Citrus Sinensis ID: 004034
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | 2.2.26 [Sep-21-2011] | |||||||
| B9DGD6 | 743 | Acetate--CoA ligase ACS, | yes | no | 0.892 | 0.934 | 0.856 | 0.0 | |
| Q9NR19 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.829 | 0.920 | 0.592 | 0.0 | |
| Q9QXG4 | 701 | Acetyl-coenzyme A synthet | yes | no | 0.829 | 0.920 | 0.583 | 0.0 | |
| Q056J9 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.818 | 0.974 | 0.584 | 0.0 | |
| Q04P35 | 654 | Acetyl-coenzyme A synthet | yes | no | 0.818 | 0.974 | 0.584 | 0.0 | |
| Q72LY9 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.827 | 0.974 | 0.579 | 0.0 | |
| Q8EYG2 | 661 | Acetyl-coenzyme A synthet | yes | no | 0.827 | 0.974 | 0.577 | 0.0 | |
| A0L576 | 644 | Acetyl-coenzyme A synthet | yes | no | 0.812 | 0.981 | 0.576 | 0.0 | |
| Q07VK4 | 648 | Acetyl-coenzyme A synthet | yes | no | 0.808 | 0.970 | 0.588 | 0.0 | |
| A0LG91 | 650 | Acetyl-coenzyme A synthet | yes | no | 0.794 | 0.950 | 0.595 | 0.0 |
| >sp|B9DGD6|ACS_ARATH Acetate--CoA ligase ACS, chloroplastic/glyoxysomal OS=Arabidopsis thaliana GN=ACS PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/695 (85%), Positives = 653/695 (93%), Gaps = 1/695 (0%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682
F GYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALV HPQCAEAAVVG+E
Sbjct: 588 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 647
Query: 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
HEVKGQGIYAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 648 HEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIM 707
Query: 743 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
RRILRKIASRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 708 RRILRKIASRQLEELGDTSTLADPSVVDQLIALAD 742
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Catalyzes the production of acetyl-CoA, an activated form of acetate that can be used for lipid synthesis or for energy generation. May play a limited role in the biosynthesis of lipids. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1 |
| >sp|Q9NR19|ACSA_HUMAN Acetyl-coenzyme A synthetase, cytoplasmic OS=Homo sapiens GN=ACSS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/665 (59%), Positives = 482/665 (72%), Gaps = 20/665 (3%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + SR A VPS Q+Y E+++RSVE+P FW DIA EFYWK N DV KG
Sbjct: 31 PPPEVSRSAHVPSLQRYRELHRRSVEEPREFWGDIAKEFYWKTPCPGPFLRYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ IEW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY QLL QVCQ +N
Sbjct: 91 IFIEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTQITYHQLLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM+ EL +AMLACARIGA+HS+VFAGFSS+SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMIPELVVAMLACARIGALHSIVFAGFSSESLCERILDSSCSL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-------------QSAMT 354
+IT++A RG K ++LK++ D AL +C + G V C+ ++ QS
Sbjct: 211 LITTDAFYRGEKLVNLKELADEALQKCQEKGFPVRCCIVVKHLGRAELGMGDSTSQSPPI 270
Query: 355 REN-----TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRSCPDVQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTV 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 VNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EG
Sbjct: 451 HRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDD 649
E GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC RD+DGY+W+TGR+DD
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDD 570
Query: 650 VINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 709
++NVSGH + TAEVESALV H AEAAVVG H VKG+ +Y FVTL +G +S +L +
Sbjct: 571 MLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEE 630
Query: 710 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 769
L +R++IG A PD I APGLPKTRSGKIMRR+LRKIA D LGD ST+ADP V+
Sbjct: 631 LKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDMSTVADPSVI 689
Query: 770 DQLIA 774
L +
Sbjct: 690 SHLFS 694
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Activates acetate so that it can be used for lipid synthesis or for energy generation. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9QXG4|ACSA_MOUSE Acetyl-coenzyme A synthetase, cytoplasmic OS=Mus musculus GN=Acss2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/665 (58%), Positives = 483/665 (72%), Gaps = 20/665 (3%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P + R A VPS Q+Y E+++RSVE+P FW +IA EFYWK N DV KG
Sbjct: 31 PPPEVRRSAHVPSLQRYRELHRRSVEEPREFWGNIAKEFYWKTACPGPFLQYNFDVTKGK 90
Query: 189 VKIEWFKGGITNICYNCLDRNI-EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN 247
+ EW KG TNICYN LDRN+ E LGDKVA YWE N+PG +TY +LL QVCQ +N
Sbjct: 91 IFTEWMKGATTNICYNVLDRNVHEKKLGDKVAFYWEGNEPGETTKITYRELLVQVCQFSN 150
Query: 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKV 307
L+ G++KGD V IY+PM++EL +AMLACAR+GA+HS+VFAGFS++SL +RI+D +
Sbjct: 151 VLRKQGIQKGDRVAIYMPMILELVVAMLACARLGALHSIVFAGFSAESLCERILDSSCCL 210
Query: 308 VITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE---------NQSAMTRENT 358
+IT++A RG K ++LK++ D +L++C + G V C+ + N S
Sbjct: 211 LITTDAFYRGEKLVNLKELADESLEKCREKGFPVRCCIVVKHLGRAELGMNDSPSQSPPV 270
Query: 359 K---------WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
K W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT
Sbjct: 271 KRPCPDVQICWNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTI 330
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
GGYM++ ATTFKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD
Sbjct: 331 GGYMLYVATTFKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPD 390
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
GR W IVDKYKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+
Sbjct: 391 EGRLWSIVDKYKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWY 450
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG 589
VVG RCPI DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EG
Sbjct: 451 HRVVGSQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEG 510
Query: 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDD 649
E GYL K WPG RT+YG+H R+ETTYFK FPGYY TGDGC RD+DGY+W+TGR+DD
Sbjct: 511 EAEGYLVFKQPWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRRDQDGYYWITGRIDD 570
Query: 650 VINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 709
++NVSGH + TAEVESALV H AEAAVVG H VKG+ +Y FVTL +G +S L +
Sbjct: 571 MLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPTLTEE 630
Query: 710 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 769
L +R++IG A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V+
Sbjct: 631 LKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPSVI 689
Query: 770 DQLIA 774
+ L +
Sbjct: 690 NHLFS 694
|
Activates acetate so that it can be used for lipid synthesis or for energy generation. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q056J9|ACSA_LEPBL Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/652 (58%), Positives = 472/652 (72%), Gaps = 15/652 (2%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLISDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661
P R +YGD +R+ TYF F GYYFTGDG RDKDGY+W+TGRVDDVINVSGHRIG+A
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARRDKDGYYWITGRVDDVINVSGHRIGSA 534
Query: 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 721
EVESALV + AEAAVVG H++KGQGIYA+VT+ EG+ ++ L+K LV V K IG
Sbjct: 535 EVESALVENRSVAEAAVVGFPHDIKGQGIYAYVTVKEGIATNDTLKKELVAIVEKVIGKI 594
Query: 722 AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 773
A PD IHWAP LPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +LI
Sbjct: 595 ARPDVIHWAPSLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKLI 646
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q04P35|ACSA_LEPBJ Acetyl-coenzyme A synthetase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/652 (58%), Positives = 472/652 (72%), Gaps = 15/652 (2%)
Query: 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185
IVLPS +F + + + + + Y +YK S+E+P FWA A+ W +KW + + N D +
Sbjct: 6 IVLPSAEFKKNSNI-TLKDYKSLYKESIENPNKFWAKEANRLTWFKKWTKVL---NHDFK 61
Query: 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQL 245
N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY + ++V +
Sbjct: 62 --NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPSESKVLTYYDVYREVNRF 119
Query: 246 ANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKP 305
AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L RI DCKP
Sbjct: 120 ANVLKKYGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEALQSRIDDCKP 179
Query: 306 KVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365
K+++T++ RG K I LK VD AL++ + +V V N+S + W+DGRD
Sbjct: 180 KLIVTADGGFRGGKPIELKRNVDIALEKSKEDVKTVIVVRRTGNESGLV-----WKDGRD 234
Query: 366 IWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423
W+ ++ P C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++ TF Y
Sbjct: 235 YWYHFLIGDPDLSPYCKPESMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLGVNLTFHYV 294
Query: 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483
FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR WD++DKY V
Sbjct: 295 FDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFWDVIDKYGVN 354
Query: 484 IFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543
IFYTAPT +R+LMR+G +V + + SLR+LGSVGEPINP AW W+F ++G +CPI DT
Sbjct: 355 IFYTAPTAIRALMREGLTHVQKRNLSSLRLLGSVGEPINPEAWEWYFKIIGKEKCPIVDT 414
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSW 601
WWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE SG LCIKS W
Sbjct: 415 WWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEINDKGEVSGNLCIKSPW 474
Query: 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661
P R +YGD +R+ TYF F GYYFTGDG RDKDGY+W+TGRVDDVINVSGHRIG+A
Sbjct: 475 PSMMRGVYGDSKRFFDTYFSQFKGYYFTGDGARRDKDGYYWITGRVDDVINVSGHRIGSA 534
Query: 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 721
EVESALV + AEAAVVG H++KGQGIYA+VT+ EG+ ++ L+K LV V K IG
Sbjct: 535 EVESALVENRSVAEAAVVGFPHDIKGQGIYAYVTVKEGIATNDTLKKELVAIVEKVIGKI 594
Query: 722 AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 773
A PD IHWAP LPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +LI
Sbjct: 595 ARPDVIHWAPSLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKLI 646
|
Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q72LY9|ACSA_LEPIC Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/661 (57%), Positives = 473/661 (71%), Gaps = 17/661 (2%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G LCIK WP R +YGD +R+ TYF F GYYFTGDG RDKDGY W+TGRVDDVIN
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVIN 532
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSGHRIG+AEVESALV + AEAAVVG H++KGQGIYA+VT+ EGV ++ L+K L+
Sbjct: 533 VSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGVTTNDVLKKELIS 592
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
V K IG A PD IHWAPGLPKTRSGKIMRRILRKIAS + + LGDTSTLADP VV +L
Sbjct: 593 TVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILRKIASGEFEGLGDTSTLADPSVVQKL 652
Query: 773 I 773
I
Sbjct: 653 I 653
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) (taxid: 267671) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q8EYG2|ACSA_LEPIN Acetyl-coenzyme A synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 777 bits (2007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/661 (57%), Positives = 472/661 (71%), Gaps = 17/661 (2%)
Query: 117 EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQR 176
E ++ E +V PS +F + A + S + Y +YK S+E+P FWA A+ W +KW +
Sbjct: 6 EVMAKER--VVSPSAEFKKNANI-SLKNYKSLYKESIENPNKFWAREANRLIWFKKW-TK 61
Query: 177 VCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYS 236
V S + N K+EWFKGG N+ YNCLDR+I L +K A+ WE ++P LTY
Sbjct: 62 VLSHDFK----NAKVEWFKGGKLNVSYNCLDRHISTPLKNKAALIWEGDNPTESRVLTYY 117
Query: 237 QLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSL 296
+ ++V + AN LK GVKKGD V++YLPM+ EL I +LAC RIGA+HSVVF GFS ++L
Sbjct: 118 DVYREVNRFANILKKFGVKKGDRVLVYLPMIPELAITILACTRIGAIHSVVFGGFSPEAL 177
Query: 297 AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356
RI DCKPK+V+T++ RG K I LK VD AL++ + +V V N+S +T
Sbjct: 178 QSRIDDCKPKLVVTADGGFRGGKPIELKKNVDLALEKSKEKVKTVIVVRRTGNESGLT-- 235
Query: 357 NTKWQDGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
W+DG+D W+ ++ P+ C+ E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY++
Sbjct: 236 ---WKDGQDYWYHFLMNDPELSAYCKPEEMDAEDPLFILYTSGSTGKPKGVLHTTGGYLL 292
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSW 474
TF Y FD KP D YWCTAD GW+TGHSY+ YGP+ NGAS V+FEG P+YPD+GR W
Sbjct: 293 GANLTFHYVFDIKPEDTYWCTADIGWVTGHSYLVYGPLSNGASSVMFEGVPSYPDAGRFW 352
Query: 475 DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVG 534
D++DKY V IFYTAPT +R+LMR+G ++ + SLR+LGSVGEPINP AW W+F +G
Sbjct: 353 DVIDKYGVNIFYTAPTAIRALMREGLNHIQKRDLSSLRLLGSVGEPINPEAWEWYFKNIG 412
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECS 592
+CPI DTWWQTETG MIT LPGA PQKPGSAT PFFGVQPV+VD G EI +GE S
Sbjct: 413 KGKCPIVDTWWQTETGSIMITALPGAIPQKPGSATLPFFGVQPVLVDNDGKEITDKGEVS 472
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G LCIK WP R +YGD +R+ TYF F GYYFTGDG RDKDGY W+TGRVDDVIN
Sbjct: 473 GNLCIKGPWPSMMRGVYGDPKRFFETYFSQFKGYYFTGDGARRDKDGYFWITGRVDDVIN 532
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSGHRIG+AEVESALV + AEAAVVG H++KGQGIYA+VT+ EGV ++ L+K L+
Sbjct: 533 VSGHRIGSAEVESALVENKSVAEAAVVGFPHDIKGQGIYAYVTVKEGVTTNDVLKKELIS 592
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
V K IG A PD IHWAPGLPKTRSGKIMRRILRKI S + + LGDTSTLADP VV +L
Sbjct: 593 TVEKMIGKIARPDVIHWAPGLPKTRSGKIMRRILRKIVSGEFEGLGDTSTLADPSVVQKL 652
Query: 773 I 773
I
Sbjct: 653 I 653
|
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0L576|ACSA_MAGSM Acetyl-coenzyme A synthetase OS=Magnetococcus sp. (strain MC-1) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/649 (57%), Positives = 478/649 (73%), Gaps = 17/649 (2%)
Query: 127 VLPSD-DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA-SEFYWKEKWGQRVCSENLDV 184
V P D + + AL+ + ++Y EMYKRS++DPA FWA+ A + W +KW + + D+
Sbjct: 6 VYPVDPNVAANALI-NEEQYQEMYKRSIDDPAAFWAEQAEARIDWFKKWDNVL---DFDL 61
Query: 185 RKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQ 244
RKG++K WF+G N+ YNC+DR++E GDKVAI WE ++P D +TY +L V +
Sbjct: 62 RKGHIK--WFEGAKLNVSYNCIDRHLEK-RGDKVAILWEGDNPAADRKITYRELSALVNK 118
Query: 245 LANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCK 304
AN LK GVKKGD V IY+PM+ E +AMLAC RIGAVHS+VF GFS D+L RI+D +
Sbjct: 119 FANALKARGVKKGDRVCIYMPMIPEAAVAMLACTRIGAVHSIVFGGFSPDALRDRIIDAE 178
Query: 305 PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364
+VVIT++ RG K I L+ V+ AL +C +V C ++ T+ +W +GR
Sbjct: 179 CRVVITADGGMRGSKKIPLRKNVETALAQCP----NVHTCFVVQD----TQLEIEWTEGR 230
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
D+W+ + + C E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+++ + T +Y F
Sbjct: 231 DVWYHEAIAAASADCPPEEMDAEDPLFVLYTSGSTGKPKGVLHTTGGYLLYASITHQYIF 290
Query: 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
DY D+YWCTAD GW+TGH+Y+ YGP+ NGA+ ++FEG PTYPD+ R W +VDK++V+I
Sbjct: 291 DYHEDDIYWCTADVGWVTGHTYIVYGPLANGATTLMFEGVPTYPDASRFWQVVDKHQVSI 350
Query: 485 FYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
FYTAPT +RS+M G+ V SR+SLR+LGSVGEPINP AW W+++VVG+ RCPI DTW
Sbjct: 351 FYTAPTAIRSIMSQGDALVKATSRQSLRILGSVGEPINPEAWEWYYHVVGEGRCPIVDTW 410
Query: 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
WQTETGG +ITPLPGA P KPGSAT PFFGV P ++ +G E+EG C G L + WPG
Sbjct: 411 WQTETGGILITPLPGATPLKPGSATRPFFGVNPKVLSNEGKEMEGPCEGILVLDHPWPGM 470
Query: 605 FRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664
RT+YGDH+R+ TYF +PGYYF GDGC RD+DGY+W+TGRVDDVINVSGHR+GTAEVE
Sbjct: 471 MRTVYGDHDRFINTYFANYPGYYFCGDGCRRDEDGYYWITGRVDDVINVSGHRLGTAEVE 530
Query: 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP 724
SALV H Q AEAAVVG+ HE+KGQGIYA+VTL+ GV S+ L+ LV VRK+IG A+
Sbjct: 531 SALVLHDQVAEAAVVGMPHEIKGQGIYAYVTLMSGVEPSDALKTELVKLVRKEIGPIASL 590
Query: 725 DKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 773
D I +APGLPKTRSGKIMRRILRKIA+ ++D LGDTSTLADP VV LI
Sbjct: 591 DVIQFAPGLPKTRSGKIMRRILRKIAAHEVDTLGDTSTLADPSVVQNLI 639
|
Magnetococcus sp. (strain MC-1) (taxid: 156889) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q07VK4|ACSA_RHOP5 Acetyl-coenzyme A synthetase OS=Rhodopseudomonas palustris (strain BisA53) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/642 (58%), Positives = 467/642 (72%), Gaps = 13/642 (2%)
Query: 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKI 191
+++++A V KY EMY RSV DP GFW D A W + + EN GNV I
Sbjct: 11 EWAKRAFVDD-AKYQEMYARSVNDPNGFWKDEAQRVDWIKPFS---VVENTSFAPGNVSI 66
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+WF+ G+ N+ NC+DR+++ D+VAI WE +DP +TY QL +VC++AN L++
Sbjct: 67 KWFEDGVLNVAANCIDRHLK-DRADQVAIIWEGDDPSESRKITYRQLHDEVCKMANVLRN 125
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
V+KGD V IYLPM+ E AMLACARIGA+HSVVF GFS DSLAQRI DC KVVIT+
Sbjct: 126 RNVQKGDRVTIYLPMIPEAAFAMLACARIGAIHSVVFGGFSPDSLAQRITDCASKVVITA 185
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ RG + + LK VDAAL + + +VD + + A + D RD W+ +
Sbjct: 186 DEGLRGGRTVPLKANVDAALRKSS----AVDWVVVVKRTGA----DVFMDDVRDFWYHEA 237
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
T+C VE + AEDPLF+LYTSGSTG+PKGVLHTTGGY+V + T +Y FDY DV
Sbjct: 238 AEMVTTECPVEPMHAEDPLFILYTSGSTGQPKGVLHTTGGYLVFASMTHQYVFDYHDGDV 297
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
YWCTAD GW+TGHSY+ YGP+ NGA+ ++FEG P YP + R W+++DK++V IFYTAPT
Sbjct: 298 YWCTADVGWVTGHSYILYGPLANGATTLMFEGVPNYPTNSRFWEVIDKHQVNIFYTAPTA 357
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R+LM+ G+E VT+ SRKSLR+LGSVGEPINP AW W+ VVG+ RCPI DTWWQTETGG
Sbjct: 358 IRALMQGGDEPVTKTSRKSLRLLGSVGEPINPEAWEWYHRVVGEDRCPIVDTWWQTETGG 417
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
+ITPLPGA KPGSAT PFFGV P I+D +EGEC+G LC+ SWPG RT+YGD
Sbjct: 418 ILITPLPGATKLKPGSATRPFFGVVPQIMDADANVLEGECTGNLCLAKSWPGQMRTVYGD 477
Query: 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671
H R+E TYF +PG YFTGDGC RD DGY+W+TGRVDDVINVSGHR+GTAEVES+LV+HP
Sbjct: 478 HARFEQTYFSAYPGKYFTGDGCRRDADGYYWITGRVDDVINVSGHRMGTAEVESSLVAHP 537
Query: 672 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731
Q +EAAVVG H++KGQGIYA+VTL+ GV +E LRK LV VRK IG A+PD I +AP
Sbjct: 538 QVSEAAVVGYPHDIKGQGIYAYVTLMTGVEPTEALRKELVAWVRKDIGPIASPDLIQFAP 597
Query: 732 GLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLI 773
GLPKTRSGKIMRRILRKIA + LGDTSTLADPGVV +L+
Sbjct: 598 GLPKTRSGKIMRRILRKIAEDESSTLGDTSTLADPGVVSELV 639
|
Rhodopseudomonas palustris (strain BisA53) (taxid: 316055) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
| >sp|A0LG91|ACSA_SYNFM Acetyl-coenzyme A synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=acsA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/631 (59%), Positives = 465/631 (73%), Gaps = 13/631 (2%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+ YL+MY++SV+DP GFW + A W + W +V S + + G+V+ +WF+ G N+
Sbjct: 21 ETYLKMYEQSVKDPEGFWGEHAKRIDWFQPW-TKVKSGSFE---GDVRFKWFENGKLNVA 76
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLDRN+ A GD+VAI WE +DP V +TY +L QVC+ AN LK G+KKGD I
Sbjct: 77 YNCLDRNL-AKRGDQVAIIWEGDDPKVSKYITYRELHDQVCRFANVLKAQGLKKGDRATI 135
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPM+ EL +AMLACARIG VHS+VFAGFS +SLA RI+DC KVVIT++ RG K I
Sbjct: 136 YLPMIPELAVAMLACARIGVVHSIVFAGFSPESLAGRILDCGGKVVITADEGLRGGKPIP 195
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK+ + AL +C + V T + GRD+ W + + C E
Sbjct: 196 LKENTEEALKKCPDVQKVIVVKHTGGKVPVVP--------GRDVDWTEAIKAASPDCPPE 247
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
+DAEDPLF+LYTSGSTGKPKGVLHTTGGY+V+TA + +Y FDY D+YWCTAD GW+T
Sbjct: 248 VMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYTALSHQYVFDYHDGDIYWCTADIGWVT 307
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSY+ YGP+ NGA+ V+FEG P YPD R W++VDK+K+ IFYTAPT +R+LMR G
Sbjct: 308 GHSYIIYGPLANGATTVMFEGIPNYPDWSRFWNVVDKHKINIFYTAPTAIRALMRQGEAP 367
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
V SRKSL++LG+VGEPINP AW W++N VG+ RCPI DTWWQTETGG +ITPLPGA
Sbjct: 368 VRATSRKSLKLLGTVGEPINPEAWLWYYNNVGEQRCPIVDTWWQTETGGILITPLPGATA 427
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
KPGSAT PFFGVQP I+D +G ++G SGYL IK SWPG RT+YGDHER++ TYF
Sbjct: 428 LKPGSATRPFFGVQPAIIDPEGKMLDGPGSGYLIIKESWPGMLRTVYGDHERFKQTYFSN 487
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682
+PG YFTGDG RD+DGY+W+TGRVDDVINVSGHR+GTAEVESALV+HP AE+AVVG
Sbjct: 488 YPGLYFTGDGARRDEDGYYWITGRVDDVINVSGHRLGTAEVESALVAHPAVAESAVVGFP 547
Query: 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
H++KGQGIYA+VTL +S+ELR+ LV VRK+IG A PD I WAPGLPKTRSGKIM
Sbjct: 548 HDIKGQGIYAYVTLKANWEHSDELRQELVKWVRKEIGPIATPDYIQWAPGLPKTRSGKIM 607
Query: 743 RRILRKIASRQLDELGDTSTLADPGVVDQLI 773
RRILRKIA+ ++D LGDT+TLA+P VV+ LI
Sbjct: 608 RRILRKIAANEIDNLGDTTTLAEPAVVEDLI 638
|
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | ||||||
| 296082228 | 769 | unnamed protein product [Vitis vinifera] | 0.911 | 0.921 | 0.870 | 0.0 | |
| 225451691 | 708 | PREDICTED: acetyl-coenzyme A synthetase, | 0.893 | 0.981 | 0.884 | 0.0 | |
| 255543445 | 749 | acetyl-CoA synthetase, putative [Ricinus | 0.895 | 0.930 | 0.872 | 0.0 | |
| 380042390 | 776 | acyl-activating enzyme 15 [Cannabis sati | 0.908 | 0.911 | 0.852 | 0.0 | |
| 356570289 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.894 | 0.925 | 0.857 | 0.0 | |
| 297805208 | 743 | AMP binding protein [Arabidopsis lyrata | 0.934 | 0.978 | 0.817 | 0.0 | |
| 224128712 | 684 | predicted protein [Populus trichocarpa] | 0.879 | 1.0 | 0.871 | 0.0 | |
| 356560404 | 752 | PREDICTED: acetyl-coenzyme A synthetase- | 0.894 | 0.925 | 0.854 | 0.0 | |
| 145323645 | 743 | acetyl-CoA synthetase [Arabidopsis thali | 0.892 | 0.934 | 0.856 | 0.0 | |
| 15239431 | 693 | acetyl-CoA synthetase [Arabidopsis thali | 0.883 | 0.991 | 0.861 | 0.0 |
| >gi|296082228|emb|CBI21233.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1303 bits (3373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 619/711 (87%), Positives = 668/711 (93%), Gaps = 2/711 (0%)
Query: 67 VVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDI 126
V MA+S +++ K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+
Sbjct: 60 VTMATSPASSSP--QRKILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDL 117
Query: 127 VLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRK 186
V PS DFS QALV SP+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR
Sbjct: 118 VFPSRDFSSQALVSSPEKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRN 177
Query: 187 GNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLA 246
GN+KIEWFKGG TNICYNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLA
Sbjct: 178 GNIKIEWFKGGRTNICYNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLA 237
Query: 247 NYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPK 306
NYLKD+GV+KGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPK
Sbjct: 238 NYLKDMGVRKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPK 297
Query: 307 VVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDI 366
VVITSNAVKRGPK I LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDI
Sbjct: 298 VVITSNAVKRGPKVISLKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDI 357
Query: 367 WWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426
WWQDVVPKYPT C+VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDY
Sbjct: 358 WWQDVVPKYPTTCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDY 417
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
KPSDVYWCTADCGWITGHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFY
Sbjct: 418 KPSDVYWCTADCGWITGHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFY 477
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
TAPTLVRSLMRDG+EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ
Sbjct: 478 TAPTLVRSLMRDGDEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 537
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR 606
TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFR
Sbjct: 538 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFR 597
Query: 607 TLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESA 666
TLYGDH+RYETTYFK FPGYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESA
Sbjct: 598 TLYGDHDRYETTYFKAFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESA 657
Query: 667 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 726
LVSHP+CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL++ VR QIGAFAAPD+
Sbjct: 658 LVSHPKCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLIMTVRSQIGAFAAPDR 717
Query: 727 IHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
IHWAPGLPKTRSGKIMRRILRKIASRQL+ELGDTSTLADP VVD+LI LAD
Sbjct: 718 IHWAPGLPKTRSGKIMRRILRKIASRQLNELGDTSTLADPNVVDELIKLAD 768
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451691|ref|XP_002278518.1| PREDICTED: acetyl-coenzyme A synthetase, cytoplasmic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/695 (88%), Positives = 660/695 (94%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
K +KT + LRHV+S++ PSGAGK+S+LNAVILGEAL+SE +D+V PS DFS QALV SP
Sbjct: 13 KILKTSNHLRHVDSMSVKPSGAGKVSQLNAVILGEALASEAHDLVFPSRDFSSQALVSSP 72
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+KY EMYKRSVEDPAGFW+DIAS+FYWKEKW Q VCSENLDVR GN+KIEWFKGG TNIC
Sbjct: 73 EKYEEMYKRSVEDPAGFWSDIASDFYWKEKWSQPVCSENLDVRNGNIKIEWFKGGRTNIC 132
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLDRNIE+G G KVAIYWE N+PG DA+LTY+QLL +VCQLANYLKD+GV+KGDAV+I
Sbjct: 133 YNCLDRNIESGNGGKVAIYWEGNEPGFDASLTYAQLLDKVCQLANYLKDMGVRKGDAVVI 192
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVITSNAVKRGPK I
Sbjct: 193 YLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITSNAVKRGPKVIS 252
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LKDIVDAAL E AK+GISVD CLTYENQSAM RE TKWQ+GRDIWWQDVVPKYPT C+VE
Sbjct: 253 LKDIVDAALVESAKNGISVDACLTYENQSAMKRETTKWQEGRDIWWQDVVPKYPTTCDVE 312
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYKPSDVYWCTADCGWIT
Sbjct: 313 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKPSDVYWCTADCGWIT 372
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVT+GPMLNGA+V+VFEGAP YPDSGR WDIVDKYKVTIFYTAPTLVRSLMRDG+EY
Sbjct: 373 GHSYVTFGPMLNGATVIVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEY 432
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 433 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 492
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG+EIEGEC+GYLC+KSSWPGAFRTLYGDH+RYETTYFK
Sbjct: 493 QKPGSATFPFFGVQPVIVDEKGIEIEGECNGYLCVKSSWPGAFRTLYGDHDRYETTYFKA 552
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682
FPGYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALVSHP+CAEAAVVGVE
Sbjct: 553 FPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVE 612
Query: 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
HEVKGQGIYAFVTLVEGVPYSEELRKSL++ VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 613 HEVKGQGIYAFVTLVEGVPYSEELRKSLIMTVRSQIGAFAAPDRIHWAPGLPKTRSGKIM 672
Query: 743 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
RRILRKIASRQL+ELGDTSTLADP VVD+LI LAD
Sbjct: 673 RRILRKIASRQLNELGDTSTLADPNVVDELIKLAD 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543445|ref|XP_002512785.1| acetyl-CoA synthetase, putative [Ricinus communis] gi|223547796|gb|EEF49288.1| acetyl-CoA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1294 bits (3348), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 610/699 (87%), Positives = 660/699 (94%), Gaps = 2/699 (0%)
Query: 81 NSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVP 140
N TE+ LRHVES+A+ P+GAGKI RLNAVILGE+L+SEE+D+V P+DDFSR+AL+
Sbjct: 50 NHNLKTTENHLRHVESMATLPNGAGKIPRLNAVILGESLASEEDDLVFPNDDFSRRALLS 109
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ--RVCSENLDVRKGNVKIEWFKGGI 198
SPQ+YLEMYK+S+EDPAGFW++IAS+FYWK++WGQ VCSEN DVR+G++KIEWFKGG+
Sbjct: 110 SPQQYLEMYKKSIEDPAGFWSEIASQFYWKQRWGQGQPVCSENFDVRQGSIKIEWFKGGV 169
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
TNICYNCLDRN+E+G +K+A+YWE N+PG + +LTYSQLLQ+VCQLANYLKD GVKKGD
Sbjct: 170 TNICYNCLDRNVESGNANKIALYWEPNEPGSEDSLTYSQLLQRVCQLANYLKDKGVKKGD 229
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
AV+IYLPMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG
Sbjct: 230 AVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGS 289
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
K I LKDIVDAAL E AK+G+SV VCLTYEN SAM RE+TKWQDGRD+WWQD VP YPT
Sbjct: 290 KVIPLKDIVDAALVESAKNGVSVGVCLTYENLSAMKRESTKWQDGRDVWWQDFVPNYPTT 349
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSDVYWCTADC
Sbjct: 350 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDVYWCTADC 409
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
GWITGHSYVTYGPMLNGA+ V+FEGAP YPDSGR WDIVDK++VTIFYTAPTLVRSLMRD
Sbjct: 410 GWITGHSYVTYGPMLNGATNVIFEGAPNYPDSGRCWDIVDKFRVTIFYTAPTLVRSLMRD 469
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
G+EYVTRYSRKSLR+LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP
Sbjct: 470 GDEYVTRYSRKSLRILGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 529
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETT
Sbjct: 530 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCVKSSWPGAFRTLYGDHERYETT 589
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
YFKPFPGYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV
Sbjct: 590 YFKPFPGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 649
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
VGVEHEVKGQGIYAFVTLVEGV YSEELRKSL+L VR QIGAFAAPDKIHWAPGLPKTRS
Sbjct: 650 VGVEHEVKGQGIYAFVTLVEGVSYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRS 709
Query: 739 GKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
GKIMRRILRKIASRQLDELGDTSTLADP VVDQLIALAD
Sbjct: 710 GKIMRRILRKIASRQLDELGDTSTLADPNVVDQLIALAD 748
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|380042390|gb|AFD33359.1| acyl-activating enzyme 15 [Cannabis sativa] | Back alignment and taxonomy information |
|---|
Score = 1290 bits (3338), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/710 (85%), Positives = 664/710 (93%), Gaps = 3/710 (0%)
Query: 69 MASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVL 128
MASS ++ N N+ ++T + LRHV+S+A+ PSGAGKI RLNAVILGEAL++EEND+V
Sbjct: 70 MASSPSHSRNNND---IRTINHLRHVDSMATMPSGAGKIPRLNAVILGEALATEENDLVF 126
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P+D+FS+QA VPSPQKYLEMYKRS+EDPAGFW++IAS+FYWK+KW V SENLDV KG
Sbjct: 127 PTDEFSQQAHVPSPQKYLEMYKRSIEDPAGFWSEIASQFYWKQKWDDSVYSENLDVSKGR 186
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V IEWFKGGITNICYNCLD+N+EAGLGDK+A+YWE ND G D +LTYSQLL +VCQLANY
Sbjct: 187 VNIEWFKGGITNICYNCLDKNVEAGLGDKIALYWEGNDTGFDDSLTYSQLLHKVCQLANY 246
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LKD+GV+KGDAV+IYLPML+ELPI MLACARIGAVHSVVFAGFS++SL+QRI+DCKPKVV
Sbjct: 247 LKDMGVQKGDAVVIYLPMLLELPITMLACARIGAVHSVVFAGFSAESLSQRIIDCKPKVV 306
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT NAVKRGPK IHLKDIVDAAL E AK+G+ +D CL YENQ AM R+ TKWQDGRDIWW
Sbjct: 307 ITCNAVKRGPKIIHLKDIVDAALVESAKTGVPIDTCLVYENQLAMKRDITKWQDGRDIWW 366
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
QDV+PKYPT+C VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP
Sbjct: 367 QDVIPKYPTECAVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKP 426
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
SDVYWCTADCGWITGHSYVTYGP+LNGAS +VFEGAP YPDSGR WDIVDKYKVTIFYTA
Sbjct: 427 SDVYWCTADCGWITGHSYVTYGPLLNGASCIVFEGAPNYPDSGRCWDIVDKYKVTIFYTA 486
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PTLVRSLMRDG+EYVTRYSRKSLR+LGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTE
Sbjct: 487 PTLVRSLMRDGDEYVTRYSRKSLRILGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTE 546
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGAWPQKPGSATFPFFGV+PVIVDEKGVEIEGECSGYLC+K SWPGAFRTL
Sbjct: 547 TGGFMITPLPGAWPQKPGSATFPFFGVKPVIVDEKGVEIEGECSGYLCVKGSWPGAFRTL 606
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
YGD+ERYETTYFKPF GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV
Sbjct: 607 YGDYERYETTYFKPFTGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 666
Query: 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
SHP+CAEAAVVG+EHEVKGQ IYAFVTLVEG PYSEELRKSL+L+VRKQIGAFAAP++IH
Sbjct: 667 SHPKCAEAAVVGIEHEVKGQAIYAFVTLVEGEPYSEELRKSLILSVRKQIGAFAAPERIH 726
Query: 729 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALADC 778
WAPGLPKTRSGKIMRRILRKIAS QLDELGDTSTLADP VV+QLI+L++C
Sbjct: 727 WAPGLPKTRSGKIMRRILRKIASGQLDELGDTSTLADPNVVEQLISLSNC 776
|
Source: Cannabis sativa Species: Cannabis sativa Genus: Cannabis Family: Cannabaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570289|ref|XP_003553322.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1283 bits (3319), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/696 (85%), Positives = 657/696 (94%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFASQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MY RS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYNRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVAIYWE N+PG+D TLTY++LLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAIYWEGNEPGLDGTLTYTELLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRGPK I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGPKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ A++G+S+D CL YEN AM R +TKW++GRDIWWQDV+P+YPT C +
Sbjct: 296 YLKDIVDAAINDSAQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIPQYPTTCPL 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKPSD+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPSDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDA 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSATFPFFGVQPVI+DEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATFPFFGVQPVILDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
PF GYYF+GDGCSRDKDGYHWL GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV
Sbjct: 596 PFAGYYFSGDGCSRDKDGYHWLIGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 655
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
EHEVKGQGIYAFVT+V+GVPYSEELRK LVL VRKQIGAFAAPDKIHWAPGLPKTRSGKI
Sbjct: 656 EHEVKGQGIYAFVTVVDGVPYSEELRKDLVLIVRKQIGAFAAPDKIHWAPGLPKTRSGKI 715
Query: 742 MRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
MRRILRKIASRQLDELGDTSTLADP VV+QLI LAD
Sbjct: 716 MRRILRKIASRQLDELGDTSTLADPNVVNQLIELAD 751
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297805208|ref|XP_002870488.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297316324|gb|EFH46747.1| AMP binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1281 bits (3315), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 602/736 (81%), Positives = 669/736 (90%), Gaps = 9/736 (1%)
Query: 51 SSPPLKLIRQSGG---------GGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFP 101
SSP L ++ SG G ++ A+ + ++ + + ++LRHVES++ P
Sbjct: 7 SSPILTVVSSSGSLDPKISGSLGSRILPATQRSSPSDNLLLHRTMSSNYLRHVESMSQLP 66
Query: 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWA 161
SG GKIS+LNAV+LGE+L+SEEND++ PS +FS QALV SPQ+Y+EM+KRS++DPAGFW+
Sbjct: 67 SGTGKISQLNAVVLGESLASEENDLIFPSKEFSGQALVSSPQQYMEMHKRSMDDPAGFWS 126
Query: 162 DIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221
DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNICYNCLD+N+EAGLGDK AIY
Sbjct: 127 DIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNVEAGLGDKTAIY 186
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
WE N+ GVDA+LTYS+LLQQVCQLANYLKD GVKKGDAV+IYLPMLMELPIAMLACARIG
Sbjct: 187 WEGNELGVDASLTYSELLQQVCQLANYLKDNGVKKGDAVVIYLPMLMELPIAMLACARIG 246
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AVHSVVFAGFS+DSLAQRI+DCKPKV++T NAVKRGPK I+LK IVDAALD+ +K G+SV
Sbjct: 247 AVHSVVFAGFSADSLAQRIIDCKPKVILTCNAVKRGPKTINLKAIVDAALDQSSKDGVSV 306
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
+CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVEWVDAEDPLFLLYTSGSTGK
Sbjct: 307 GICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPLFLLYTSGSTGK 366
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWITGHSYVTYGPMLNGA+VVVF
Sbjct: 367 PKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYGPMLNGATVVVF 426
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EGAP YPDSGR WDIVDKYKV+IFYTAPTLVRSLMRD ++YVTR+SRKSLRVLGSVGEPI
Sbjct: 427 EGAPNYPDSGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKYVTRHSRKSLRVLGSVGEPI 486
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD
Sbjct: 487 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 546
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYH 641
EKG+EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKPF GYYF+GDGC RDKDGY+
Sbjct: 547 EKGIEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSGDGCRRDKDGYY 606
Query: 642 WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP 701
WLTGRVDDVINVSGHRIGTAEVESALV HPQCAEAAVVG+EHEVKGQGIYAFVTL+EGVP
Sbjct: 607 WLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGIYAFVTLLEGVP 666
Query: 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 761
YSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIMRRILRKIASRQL+ELGD S
Sbjct: 667 YSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKIASRQLEELGDIS 726
Query: 762 TLADPGVVDQLIALAD 777
TLADP VVDQLIALAD
Sbjct: 727 TLADPSVVDQLIALAD 742
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128712|ref|XP_002320403.1| predicted protein [Populus trichocarpa] gi|222861176|gb|EEE98718.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1278 bits (3307), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/694 (87%), Positives = 647/694 (93%), Gaps = 10/694 (1%)
Query: 85 MKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQK 144
M T++ LRHV S+ PSGAGK S L+AVILGEAL+SEEND++ PSDDF+RQA V SPQ+
Sbjct: 1 MATDNKLRHVTSMLELPSGAGKFSALHAVILGEALASEENDLIFPSDDFARQAHVSSPQQ 60
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
YLEMYKRSVEDPAGFW+DIAS+FYWK+KW Q CSEN D RKGN+ I+WFKGG+TNICYN
Sbjct: 61 YLEMYKRSVEDPAGFWSDIASQFYWKKKWDQPACSENFDFRKGNISIQWFKGGLTNICYN 120
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
CLDRNIE+G DK+AIYWE NDPG++ +LTYSQLL +VCQL+NYLKD+GVKKGDAV+IYL
Sbjct: 121 CLDRNIESGNADKIAIYWEGNDPGLEDSLTYSQLLDRVCQLSNYLKDVGVKKGDAVVIYL 180
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
PMLMELPIAMLACARIGAVHSVVFAGFSS+SLAQRI+DCKPKVVIT NAVKRG KAIHLK
Sbjct: 181 PMLMELPIAMLACARIGAVHSVVFAGFSSESLAQRIVDCKPKVVITCNAVKRGAKAIHLK 240
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
DIVDAAL E AK+GISVDVCLTYEN++AM RE TKWQ+GRD+WWQD VPKYPT CEVEWV
Sbjct: 241 DIVDAALAESAKNGISVDVCLTYENENAMKREGTKWQEGRDVWWQDFVPKYPTTCEVEWV 300
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
DAEDPLFLLYTSGSTGKPKGVLHTTGGYMV++ATTFKYAFDYKPSDVYWCTADCGWITGH
Sbjct: 301 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYSATTFKYAFDYKPSDVYWCTADCGWITGH 360
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SYVTYGPMLNGASVVVFEG PTYPD+GR WDIVDK+KVTIFYTAPTL +VT
Sbjct: 361 SYVTYGPMLNGASVVVFEGTPTYPDAGRCWDIVDKFKVTIFYTAPTL----------FVT 410
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK
Sbjct: 411 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 470
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
PGSATFPFFGVQPVIVDEKGVEIEGECSGYLC+KSSWPGAFRTLYGDHERYETTYFKPF
Sbjct: 471 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCLKSSWPGAFRTLYGDHERYETTYFKPFA 530
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP+CAEAAVVGVEHE
Sbjct: 531 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGVEHE 590
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744
VKGQGIYAFVTLVEG PYSEELRKSL+L VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR
Sbjct: 591 VKGQGIYAFVTLVEGEPYSEELRKSLILTVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 650
Query: 745 ILRKIASRQLDELGDTSTLADPGVVDQLIALADC 778
ILRKIAS+QLDELGDTSTLA+P VV+QLI LADC
Sbjct: 651 ILRKIASKQLDELGDTSTLAEPHVVEQLIELADC 684
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560404|ref|XP_003548482.1| PREDICTED: acetyl-coenzyme A synthetase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1276 bits (3303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/696 (85%), Positives = 655/696 (94%)
Query: 82 SKKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPS 141
+ ++T +FLRHVES+ PSGAG IS LNAVILGE+L++EE+D VLPS+DF+ QA V S
Sbjct: 56 ASNLRTNNFLRHVESMKLLPSGAGHISHLNAVILGESLATEEDDFVLPSEDFAGQANVQS 115
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
P++YL+MYKRS+EDPAGFW++IASEFYWK++WG +VC EN DVRKGN+KIEWFKGGITNI
Sbjct: 116 PEQYLKMYKRSIEDPAGFWSEIASEFYWKQRWGDKVCDENFDVRKGNIKIEWFKGGITNI 175
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
CYNCLDRN+EAGLGDKVA+YWE N+PG+D TLTY+QLLQQVCQLANYLKDIGVKKGDAVI
Sbjct: 176 CYNCLDRNVEAGLGDKVAVYWEGNEPGLDGTLTYTQLLQQVCQLANYLKDIGVKKGDAVI 235
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IYLPMLMELPIAMLACARIGAVHSVVFAGFS+++L+QRI+DCKPKVVIT NAVKRG K I
Sbjct: 236 IYLPMLMELPIAMLACARIGAVHSVVFAGFSAEALSQRIIDCKPKVVITCNAVKRGSKPI 295
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+LKDIVDAA+++ +++G+S+D CL YEN AM R +TKW++GRDIWWQDV+ +YPT C V
Sbjct: 296 YLKDIVDAAINDSSQNGVSIDKCLVYENPLAMKRVDTKWKEGRDIWWQDVIHQYPTTCPV 355
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV+TATTFKYAFDYKP D+YWCTADCGWI
Sbjct: 356 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPHDIYWCTADCGWI 415
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TGHSYVTYGPMLNGASV+V+EGAP YPD+GR WDIVDKYKVTIFYTAPTLVRSLMRDG+
Sbjct: 416 TGHSYVTYGPMLNGASVIVYEGAPNYPDAGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDT 475
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+VTRYSRKSLRVLGSVGEPINPSAWRWF+NVVGDSRCPISDTWWQTETGGFMITPLPGAW
Sbjct: 476 FVTRYSRKSLRVLGSVGEPINPSAWRWFYNVVGDSRCPISDTWWQTETGGFMITPLPGAW 535
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
PQKPGSAT PFFGVQPVIVDEKGVEIEGEC+GYLC+K SWPGAFRTLYGDHERYETTYFK
Sbjct: 536 PQKPGSATLPFFGVQPVIVDEKGVEIEGECNGYLCVKKSWPGAFRTLYGDHERYETTYFK 595
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
PF GYYF+GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV
Sbjct: 596 PFSGYYFSGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 655
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
EHEVKGQGIYAFVT+V+GVPYSEELRK LVL VRKQIGAFAAPDKIHWAPGLPKTRSGKI
Sbjct: 656 EHEVKGQGIYAFVTVVDGVPYSEELRKDLVLTVRKQIGAFAAPDKIHWAPGLPKTRSGKI 715
Query: 742 MRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
MRRILRKIASRQLDELGDTSTL+DP VV+QLI LAD
Sbjct: 716 MRRILRKIASRQLDELGDTSTLSDPNVVNQLIELAD 751
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145323645|ref|NP_001031974.2| acetyl-CoA synthetase [Arabidopsis thaliana] gi|378548265|sp|B9DGD6.1|ACS_ARATH RecName: Full=Acetate--CoA ligase ACS, chloroplastic/glyoxysomal; AltName: Full=Acetyl-CoA synthetase; Flags: Precursor gi|222423672|dbj|BAH19803.1| AT5G36880 [Arabidopsis thaliana] gi|332006738|gb|AED94121.1| acetyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/695 (85%), Positives = 653/695 (93%), Gaps = 1/695 (0%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682
F GYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALV HPQCAEAAVVG+E
Sbjct: 588 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 647
Query: 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
HEVKGQGIYAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 648 HEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIM 707
Query: 743 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
RRILRKIASRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 708 RRILRKIASRQLEELGDTSTLADPSVVDQLIALAD 742
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239431|ref|NP_198504.1| acetyl-CoA synthetase [Arabidopsis thaliana] gi|8953708|dbj|BAA98066.1| acetyl-CoA synthetase [Arabidopsis thaliana] gi|15028047|gb|AAK76554.1| putative acetyl-CoA synthetase [Arabidopsis thaliana] gi|26983904|gb|AAN86204.1| putative acetyl-CoA synthetase [Arabidopsis thaliana] gi|332006737|gb|AED94120.1| acetyl-CoA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1267 bits (3279), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/687 (86%), Positives = 648/687 (94%)
Query: 91 LRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYK 150
LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SPQ+Y+EM+K
Sbjct: 6 LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSPQQYMEMHK 65
Query: 151 RSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNI 210
RS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNICYNCLD+N+
Sbjct: 66 RSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNICYNCLDKNV 125
Query: 211 EAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL 270
EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+IYLPMLMEL
Sbjct: 126 EAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVIYLPMLMEL 185
Query: 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA 330
PIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+LK IVDAA
Sbjct: 186 PIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTINLKAIVDAA 245
Query: 331 LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390
LD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVEWVDAEDPL
Sbjct: 246 LDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVEWVDAEDPL 305
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYG 450
FLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWITGHSYVTYG
Sbjct: 306 FLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWITGHSYVTYG 365
Query: 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510
PMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++VTR+SRKS
Sbjct: 366 PMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKFVTRHSRKS 425
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 570
LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF
Sbjct: 426 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 485
Query: 571 PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630
PFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKPF GYYF+G
Sbjct: 486 PFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKPFAGYYFSG 545
Query: 631 DGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 690
DGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALV HPQCAEAAVVG+EHEVKGQGI
Sbjct: 546 DGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIEHEVKGQGI 605
Query: 691 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750
YAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIMRRILRKIA
Sbjct: 606 YAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIMRRILRKIA 665
Query: 751 SRQLDELGDTSTLADPGVVDQLIALAD 777
SRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 666 SRQLEELGDTSTLADPSVVDQLIALAD 692
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 778 | ||||||
| TAIR|locus:2149104 | 743 | ACS "acetyl-CoA synthetase" [A | 0.892 | 0.934 | 0.840 | 0.0 | |
| UNIPROTKB|Q5QPH3 | 714 | ACSS2 "Acetyl-coenzyme A synth | 0.555 | 0.605 | 0.616 | 8.8e-217 | |
| UNIPROTKB|Q9NR19 | 701 | ACSS2 "Acetyl-coenzyme A synth | 0.532 | 0.590 | 0.636 | 2.3e-216 | |
| MGI|MGI:1890410 | 701 | Acss2 "acyl-CoA synthetase sho | 0.532 | 0.590 | 0.636 | 3.4e-215 | |
| UNIPROTKB|A7YWF1 | 701 | ACSS2 "Uncharacterized protein | 0.532 | 0.590 | 0.640 | 3.1e-214 | |
| RGD|1305489 | 701 | Acss2 "acyl-CoA synthetase sho | 0.532 | 0.590 | 0.633 | 3.1e-214 | |
| UNIPROTKB|E2R0C6 | 714 | ACSS2 "Uncharacterized protein | 0.529 | 0.577 | 0.641 | 3.5e-213 | |
| UNIPROTKB|J9P7N4 | 701 | ACSS2 "Uncharacterized protein | 0.529 | 0.587 | 0.641 | 3.5e-213 | |
| UNIPROTKB|F1S4Y0 | 701 | ACSS2 "Uncharacterized protein | 0.532 | 0.590 | 0.633 | 2.8e-211 | |
| ZFIN|ZDB-GENE-040718-388 | 698 | acss2 "acyl-CoA synthetase sho | 0.579 | 0.646 | 0.573 | 1.5e-210 |
| TAIR|locus:2149104 ACS "acetyl-CoA synthetase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3216 (1137.1 bits), Expect = 0., P = 0.
Identities = 584/695 (84%), Positives = 641/695 (92%)
Query: 83 KKMKTESFLRHVESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSP 142
+KM + S LRHVES++ PSGAGKIS+LNAV+LGE+L+SEEND+V PS +FS QALV SP
Sbjct: 49 RKMSSNS-LRHVESMSQLPSGAGKISQLNAVVLGESLASEENDLVFPSKEFSGQALVSSP 107
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
Q+Y+EM+KRS++DPA FW+DIASEFYWK+KWG +V SENLDVRKG + IEWFKGGITNIC
Sbjct: 108 QQYMEMHKRSMDDPAAFWSDIASEFYWKQKWGDQVFSENLDVRKGPISIEWFKGGITNIC 167
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
YNCLD+N+EAGLGDK AI+WE N+ GVDA+LTYS+LLQ+VCQLANYLKD GVKKGDAV+I
Sbjct: 168 YNCLDKNVEAGLGDKTAIHWEGNELGVDASLTYSELLQRVCQLANYLKDNGVKKGDAVVI 227
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
YLPMLMELPIAMLACARIGAVHSVVFAGFS+DSLAQRI+DCKP V++T NAVKRGPK I+
Sbjct: 228 YLPMLMELPIAMLACARIGAVHSVVFAGFSADSLAQRIVDCKPNVILTCNAVKRGPKTIN 287
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
LK IVDAALD+ +K G+SV +CLTY+N A TRENTKWQ+GRD+WWQDV+ +YPT CEVE
Sbjct: 288 LKAIVDAALDQSSKDGVSVGICLTYDNSLATTRENTKWQNGRDVWWQDVISQYPTSCEVE 347
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM++TATTFKYAFDYK +DVYWCTADCGWIT
Sbjct: 348 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMIYTATTFKYAFDYKSTDVYWCTADCGWIT 407
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSYVTYGPMLNGA+VVVFEGAP YPD GR WDIVDKYKV+IFYTAPTLVRSLMRD +++
Sbjct: 408 GHSYVTYGPMLNGATVVVFEGAPNYPDPGRCWDIVDKYKVSIFYTAPTLVRSLMRDDDKF 467
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
VTR+SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP
Sbjct: 468 VTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 527
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
QKPGSATFPFFGVQPVIVDEKG EIEGECSGYLC+K SWPGAFRTL+GDHERYETTYFKP
Sbjct: 528 QKPGSATFPFFGVQPVIVDEKGNEIEGECSGYLCVKGSWPGAFRTLFGDHERYETTYFKP 587
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXX 682
F GYYF+GDGCSRDKDGY+WLTGRVDDVINVSGHRIGTAEVESALV HPQC
Sbjct: 588 FAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVLHPQCAEAAVVGIE 647
Query: 683 XXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
KGQGIYAFVTL+EGVPYSEELRKSLVL VR QIGAFAAPD+IHWAPGLPKTRSGKIM
Sbjct: 648 HEVKGQGIYAFVTLLEGVPYSEELRKSLVLMVRNQIGAFAAPDRIHWAPGLPKTRSGKIM 707
Query: 743 RRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
RRILRKIASRQL+ELGDTSTLADP VVDQLIALAD
Sbjct: 708 RRILRKIASRQLEELGDTSTLADPSVVDQLIALAD 742
|
|
| UNIPROTKB|Q5QPH3 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1485 (527.8 bits), Expect = 8.8e-217, Sum P(2) = 8.8e-217
Identities = 267/433 (61%), Positives = 321/433 (74%)
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
DV + +S + W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGK
Sbjct: 276 DVQGKLKEKSKRVQPQISWNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGK 335
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
PKGV+HT GGYM++ ATTFKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+F
Sbjct: 336 PKGVVHTVGGYMLYVATTFKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLF 395
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
EG PTYPD R W IVDKYKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPI
Sbjct: 396 EGIPTYPDVNRLWSIVDKYKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPI 455
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581
NP AW W+ VVG RCPI DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++
Sbjct: 456 NPEAWLWYHRVVGAQRCPIVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILN 515
Query: 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYH 641
E G E+EGE GYL K WPG RT+YG+HER+ETTYFK FPGYY TGDGC RD+DGY+
Sbjct: 516 ESGEELEGEAEGYLVFKQPWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYY 575
Query: 642 WLTGRVDDVINVSGHRIGTAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVP 701
W+TGR+DD++NVSGH + TAEVESALV H KG+ +Y FVTL +G
Sbjct: 576 WITGRIDDMLNVSGHLLSTAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHT 635
Query: 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 761
+S +L + L +R++IG A PD I APGLPKTRSGKIMRR+LRKIA D LGD S
Sbjct: 636 FSPKLTEELKKQIREKIGPIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDMS 694
Query: 762 TLADPGVVDQLIA 774
T+ADP V+ L +
Sbjct: 695 TVADPSVISHLFS 707
|
|
| UNIPROTKB|Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1481 (526.4 bits), Expect = 2.3e-216, Sum P(2) = 2.3e-216
Identities = 264/415 (63%), Positives = 315/415 (75%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGIDLWWHELMQEAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVNRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+HER+ETTYFK FPGYY TGDGC RD+DGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCQRDQDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S +L + L +R++IG
Sbjct: 581 TAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPKLTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
A PD I APGLPKTRSGKIMRR+LRKIA D LGD ST+ADP V+ L +
Sbjct: 641 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDMSTVADPSVISHLFS 694
|
|
| MGI|MGI:1890410 Acss2 "acyl-CoA synthetase short-chain family member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1492 (530.3 bits), Expect = 3.4e-215, Sum P(2) = 3.4e-215
Identities = 264/415 (63%), Positives = 318/415 (76%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTIGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+H R+ETTYFK FPGYY TGDGC RD+DGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 581 TAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPTLTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V++ L +
Sbjct: 641 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPSVINHLFS 694
|
|
| UNIPROTKB|A7YWF1 ACSS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1490 (529.6 bits), Expect = 3.1e-214, Sum P(2) = 3.1e-214
Identities = 266/415 (64%), Positives = 317/415 (76%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ K +CE EW DAEDPLF+LYTSGSTGKPKGVLHT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQKAGDECEPEWCDAEDPLFILYTSGSTGKPKGVLHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IV+K
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVEK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGAIPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+HER+ETTYFK FPGYY TGDGC RDKDGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHERFETTYFKKFPGYYVTGDGCRRDKDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 581 TAEVESALVEHKAVAEAAVVGHPHPVKGECLYCFVTLCDGHIFSPALTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ DP ++ QL +
Sbjct: 641 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVVDPSIITQLFS 694
|
|
| RGD|1305489 Acss2 "acyl-CoA synthetase short-chain family member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1482 (526.7 bits), Expect = 3.1e-214, Sum P(2) = 3.1e-214
Identities = 263/415 (63%), Positives = 317/415 (76%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D+WW +++ + + E EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNEGVDLWWHELMQQAGDEFEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ P DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD GR W IVDK
Sbjct: 341 FKYVFDFHPEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDEGRLWSIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G++ VT++SR SL+VLG+VGEPINP AW W+ VVG RCP
Sbjct: 401 YKVTKFYTAPTAIRMLMKFGDDPVTKHSRASLQVLGTVGEPINPEAWLWYHRVVGSQRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSA+FPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSASFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+H R+ETTYFK FPGYY TGDGC RD+DGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHTRFETTYFKKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 581 TAEVESALVEHEAVAEAAVVGHPHPVKGECLYCFVTLCDGHTFSPTLTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V++ L +
Sbjct: 641 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPSVINHLFS 694
|
|
| UNIPROTKB|E2R0C6 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1477 (525.0 bits), Expect = 3.5e-213, Sum P(2) = 3.5e-213
Identities = 265/413 (64%), Positives = 314/413 (76%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 294 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 353
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 354 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 413
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 414 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 473
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 474 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 533
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+HER+E TYFK FPGYY TGDGC RD+DGY+W+TGR+DD++NVSGH +
Sbjct: 534 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLS 593
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 594 TAEVESALVEHEAIAEAAVVGHPHPVKGECLYCFVTLCDGYTFSPTLTEELKKQIREKIG 653
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V+ QL
Sbjct: 654 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPTVICQL 705
|
|
| UNIPROTKB|J9P7N4 ACSS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1477 (525.0 bits), Expect = 3.5e-213, Sum P(2) = 3.5e-213
Identities = 265/413 (64%), Positives = 314/413 (76%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W G D+WW +++ + +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNQGVDLWWHELMQEAEDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PTYPD R W+IVDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTYPDVSRLWNIVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+E VTR+SR SL+VLG+VGEPINP AW W+ VVG RC
Sbjct: 401 YKVTKFYTAPTAIRLLMKFGDEPVTRHSRASLQVLGTVGEPINPEAWLWYHRVVGAQRCS 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA P KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATPMKPGSATFPFFGVAPAILNESGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+HER+E TYFK FPGYY TGDGC RD+DGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRRDQDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 581 TAEVESALVEHEAIAEAAVVGHPHPVKGECLYCFVTLCDGYTFSPTLTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V+ QL
Sbjct: 641 PIATPDYIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPTVICQL 692
|
|
| UNIPROTKB|F1S4Y0 ACSS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1468 (521.8 bits), Expect = 2.8e-211, Sum P(2) = 2.8e-211
Identities = 263/415 (63%), Positives = 314/415 (75%)
Query: 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419
W +G D WW +++ +CE EW DAEDPLF+LYTSGSTGKPKGV+HT GGYM++ ATT
Sbjct: 281 WNNGVDFWWHELMQDAGDECEPEWCDAEDPLFILYTSGSTGKPKGVVHTVGGYMLYVATT 340
Query: 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK 479
FKY FD+ DV+WCTAD GWITGHSYVTYGP+ NGA+ V+FEG PT+PD R W +VDK
Sbjct: 341 FKYVFDFHAEDVFWCTADIGWITGHSYVTYGPLANGATSVLFEGIPTHPDVSRLWSVVDK 400
Query: 480 YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539
YKVT FYTAPT +R LM+ G+ VT++SR SL+VLG+VGEPINP AW W+ VVGD+RCP
Sbjct: 401 YKVTKFYTAPTAIRLLMKSGDGPVTKHSRASLKVLGTVGEPINPEAWLWYHRVVGDNRCP 460
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
I DT+WQTETGG M+TPLPGA KPGSATFPFFGV P I++E G E+EGE GYL K
Sbjct: 461 IVDTFWQTETGGHMLTPLPGATRTKPGSATFPFFGVAPAILNEAGEELEGEAEGYLVFKQ 520
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
WPG RT+YG+HER+E TYFK FPGYY TGDGC RDKDGY+W+TGR+DD++NVSGH +
Sbjct: 521 PWPGIMRTVYGNHERFEATYFKKFPGYYVTGDGCRRDKDGYYWITGRIDDMLNVSGHLLS 580
Query: 660 TAEVESALVSHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
TAEVESALV H KG+ +Y FVTL +G +S L + L +R++IG
Sbjct: 581 TAEVESALVEHQAIAEAAVVGHPHPVKGECLYCFVTLRDGHIFSPTLTEELKKQIREKIG 640
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
A PD I APGLPKTRSGKIMRR+LRKIA D LGDTST+ADP V+ QL +
Sbjct: 641 PIATPDFIQNAPGLPKTRSGKIMRRVLRKIAQNDHD-LGDTSTVADPSVITQLFS 694
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| ZFIN|ZDB-GENE-040718-388 acss2 "acyl-CoA synthetase short-chain family member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 1435 (510.2 bits), Expect = 1.5e-210, Sum P(2) = 1.5e-210
Identities = 266/464 (57%), Positives = 326/464 (70%)
Query: 319 KAIHLKDIVDAALDECAKSGISVDV---C--LTYENQSAMTRE-----NTKWQDGRDIWW 368
K I LK + DE + +S C L E Q R+ W D+ W
Sbjct: 229 KCIMLKHLTKE--DEASSGSLSPPAKRACPDLQQEKQKERVRKVRPPPQVPWNPEVDMCW 286
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++ +CE W D+EDPLF+LYTSGSTGKPKGVLHT GYM++TA+TFK FDY
Sbjct: 287 HSLIGGASEECEPVWCDSEDPLFILYTSGSTGKPKGVLHTVSGYMLYTASTFKMVFDYHS 346
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GWITGHSY+TYGP+ NGA+ V+FEG PTYPD R W+IVDKY V+ FYTA
Sbjct: 347 DDVYWCTADIGWITGHSYITYGPLANGATSVLFEGLPTYPDVSRMWEIVDKYHVSKFYTA 406
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R LM+ G++ V +Y R SL++LG+VGEPINP AW+W++NVVG+ RCP+ DT+WQTE
Sbjct: 407 PTAIRLLMKYGSDPVHKYKRTSLKILGTVGEPINPEAWQWYYNVVGEKRCPVVDTFWQTE 466
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG ++TPLP A P KPGSATFPFFGV P I++E G E+EG GYL K WPG RT+
Sbjct: 467 TGGHVMTPLPAATPMKPGSATFPFFGVVPAILNESGEELEGPSEGYLVFKQPWPGVMRTV 526
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
YG+H R+ETTYFK FPGYY TGDGC RDKDGY+W+TGR+DD++NVSGH + TAEVESALV
Sbjct: 527 YGNHLRFETTYFKKFPGYYVTGDGCRRDKDGYYWITGRIDDMLNVSGHLLSTAEVESALV 586
Query: 669 SHPQCXXXXXXXXXXXXKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
H KG+ +Y FVTL +G+ Y+++L L VR++IGA A PD I
Sbjct: 587 EHEAVAEAAVVGRPHPVKGESLYCFVTLNDGINYNQKLEAELKKQVREKIGAIATPDYIQ 646
Query: 729 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
APGLPKTRSGKIMRR+LRKIA + D LGD STLAD V++ L
Sbjct: 647 NAPGLPKTRSGKIMRRVLRKIACNERD-LGDVSTLADSSVIEHL 689
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8YJ48 | ACSA_BRUME | 6, ., 2, ., 1, ., 1 | 0.5740 | 0.8239 | 0.9846 | yes | no |
| B7KPN8 | ACSA_METC4 | 6, ., 2, ., 1, ., 1 | 0.5641 | 0.8187 | 0.9769 | yes | no |
| Q4UP35 | ACSA_XANC8 | 6, ., 2, ., 1, ., 1 | 0.5712 | 0.7982 | 0.9598 | yes | no |
| Q98ET8 | ACSA_RHILO | 6, ., 2, ., 1, ., 1 | 0.5716 | 0.8123 | 0.9708 | yes | no |
| Q8PF09 | ACSA_XANAC | 6, ., 2, ., 1, ., 1 | 0.5750 | 0.7969 | 0.9582 | yes | no |
| A1UR36 | ACSA_BARBK | 6, ., 2, ., 1, ., 1 | 0.5505 | 0.8136 | 0.9708 | yes | no |
| A0KNI2 | ACSA_AERHH | 6, ., 2, ., 1, ., 1 | 0.5818 | 0.7943 | 0.9537 | yes | no |
| Q056J9 | ACSA_LEPBL | 6, ., 2, ., 1, ., 1 | 0.5843 | 0.8187 | 0.9740 | yes | no |
| Q2NXE2 | ACSA_XANOM | 6, ., 2, ., 1, ., 1 | 0.5813 | 0.7969 | 0.9582 | yes | no |
| Q07VK4 | ACSA_RHOP5 | 6, ., 2, ., 1, ., 1 | 0.5887 | 0.8084 | 0.9706 | yes | no |
| Q57B76 | ACSA_BRUAB | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| B0SRX5 | ACSA_LEPBP | 6, ., 2, ., 1, ., 1 | 0.5659 | 0.8187 | 0.9740 | yes | no |
| A7HSR8 | ACSA_PARL1 | 6, ., 2, ., 1, ., 1 | 0.5825 | 0.8084 | 0.9721 | yes | no |
| C0RF62 | ACSA_BRUMB | 6, ., 2, ., 1, ., 1 | 0.5725 | 0.8239 | 0.9846 | yes | no |
| A4YK73 | ACSA_BRASO | 6, ., 2, ., 1, ., 1 | 0.5809 | 0.8084 | 0.9676 | yes | no |
| A9IYZ3 | ACSA_BART1 | 6, ., 2, ., 1, ., 1 | 0.5658 | 0.8161 | 0.9814 | yes | no |
| B9DGD6 | ACS_ARATH | 6, ., 2, ., 1, ., 1 | 0.8561 | 0.8920 | 0.9340 | yes | no |
| Q8P3L1 | ACSA_XANCP | 6, ., 2, ., 1, ., 1 | 0.5712 | 0.7982 | 0.9598 | yes | no |
| Q9QXG4 | ACSA_MOUSE | 6, ., 2, ., 1, ., 1 | 0.5834 | 0.8290 | 0.9201 | yes | no |
| B8FIN2 | ACSA_DESAA | 6, ., 2, ., 1, ., 1 | 0.5615 | 0.8174 | 0.9845 | yes | no |
| Q9VP61 | ACSA_DROME | 6, ., 2, ., 1, ., 1 | 0.5506 | 0.8367 | 0.9716 | yes | no |
| A9W5V0 | ACSA_METEP | 6, ., 2, ., 1, ., 1 | 0.5625 | 0.8187 | 0.9815 | yes | no |
| A7IFD4 | ACSA_XANP2 | 6, ., 2, ., 1, ., 1 | 0.5850 | 0.7943 | 0.9493 | yes | no |
| A4SJM6 | ACSA_AERS4 | 6, ., 2, ., 1, ., 1 | 0.5707 | 0.7943 | 0.9537 | yes | no |
| A1U2S9 | ACSA_MARAV | 6, ., 2, ., 1, ., 1 | 0.5703 | 0.8136 | 0.9753 | yes | no |
| A0LG91 | ACSA_SYNFM | 6, ., 2, ., 1, ., 1 | 0.5958 | 0.7943 | 0.9507 | yes | no |
| Q8FYQ3 | ACSA_BRUSU | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| A0L576 | ACSA_MAGSM | 6, ., 2, ., 1, ., 1 | 0.5762 | 0.8123 | 0.9813 | yes | no |
| Q72LY9 | ACSA_LEPIC | 6, ., 2, ., 1, ., 1 | 0.5794 | 0.8277 | 0.9742 | yes | no |
| A9WWT6 | ACSA_BRUSI | 6, ., 2, ., 1, ., 1 | 0.5740 | 0.8239 | 0.9846 | yes | no |
| B8EPJ0 | ACSA_METSB | 6, ., 2, ., 1, ., 1 | 0.5652 | 0.8200 | 0.9891 | yes | no |
| Q89WV5 | ACSA_BRAJA | 6, ., 2, ., 1, ., 1 | 0.5873 | 0.7943 | 0.9537 | yes | no |
| A1WY97 | ACSA_HALHL | 6, ., 2, ., 1, ., 1 | 0.5759 | 0.7930 | 0.9565 | yes | no |
| A1SZA2 | ACSA_PSYIN | 6, ., 2, ., 1, ., 1 | 0.5618 | 0.8174 | 0.9799 | yes | no |
| Q2YLH5 | ACSA_BRUA2 | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| B0S8X7 | ACSA_LEPBA | 6, ., 2, ., 1, ., 1 | 0.5659 | 0.8187 | 0.9740 | yes | no |
| Q04P35 | ACSA_LEPBJ | 6, ., 2, ., 1, ., 1 | 0.5843 | 0.8187 | 0.9740 | yes | no |
| Q0AAW0 | ACSA_ALHEH | 6, ., 2, ., 1, ., 1 | 0.5740 | 0.8136 | 0.9813 | yes | no |
| A6WXV8 | ACSA_OCHA4 | 6, ., 2, ., 1, ., 1 | 0.5879 | 0.7969 | 0.9523 | yes | no |
| A9M849 | ACSA_BRUC2 | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| B1ZB59 | ACSA_METPB | 6, ., 2, ., 1, ., 1 | 0.5703 | 0.8187 | 0.9815 | yes | no |
| Q6FYL4 | ACSA_BARQU | 6, ., 2, ., 1, ., 1 | 0.5660 | 0.8136 | 0.9708 | yes | no |
| Q6MNF1 | ACSA_BDEBA | 6, ., 2, ., 1, ., 1 | 0.5800 | 0.7930 | 0.9565 | yes | no |
| Q9HV66 | ACSA2_PSEAE | 6, ., 2, ., 1, ., 1 | 0.5879 | 0.8136 | 0.9813 | yes | no |
| Q6G1W0 | ACSA_BARHE | 6, ., 2, ., 1, ., 1 | 0.5636 | 0.8149 | 0.9723 | yes | no |
| B2S7N5 | ACSA_BRUA1 | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| A5VSF3 | ACSA_BRUO2 | 6, ., 2, ., 1, ., 1 | 0.5755 | 0.8239 | 0.9846 | yes | no |
| Q9NR19 | ACSA_HUMAN | 6, ., 2, ., 1, ., 1 | 0.5924 | 0.8290 | 0.9201 | yes | no |
| Q8EYG2 | ACSA_LEPIN | 6, ., 2, ., 1, ., 1 | 0.5779 | 0.8277 | 0.9742 | yes | no |
| Q21LV0 | ACSA_SACD2 | 6, ., 2, ., 1, ., 1 | 0.5933 | 0.7930 | 0.9565 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.963 |
| 4th Layer | 6.2.1.1 | 0.946 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh1_pm.C_scaffold_7002472 | annotation not avaliable (743 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | Al_scaffold_0006_297 | Malate synthase Fragment (EC 2.3.3.9) (562 aa) | • | • | • | • | 0.945 | ||||
 | fgenesh2_kg.3__2397__AT3G21720.1 | annotation not avaliable (576 aa) | • | • | • | 0.862 | |||||
 | scaffold_501390.1 | annotation not avaliable (409 aa) | • | • | • | 0.836 | |||||
 | fgenesh2_kg.7__3034__AT5G35360.1 | annotation not avaliable (537 aa) | • | • | • | • | 0.798 | ||||
 | fgenesh2_kg.6__1057__AT5G10920.1 | annotation not avaliable (518 aa) | • | • | • | 0.767 | |||||
 | fgenesh2_kg.4__2436__AT2G42790.1 | annotation not avaliable (509 aa) | • | • | • | 0.747 | |||||
 | fgenesh2_kg.8__692__AT5G48230.2 | annotation not avaliable (403 aa) | • | • | • | • | 0.739 | ||||
 | fgenesh2_kg.5__2321__AT3G58750.1 | annotation not avaliable (514 aa) | • | • | • | 0.737 | |||||
 | scaffold_302965.1 | annotation not avaliable (609 aa) | • | • | 0.725 | ||||||
 | Al_scaffold_0005_2796 | annotation not avaliable (480 aa) | • | • | • | 0.725 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 778 | |||
| PLN02654 | 666 | PLN02654, PLN02654, acetate-CoA ligase | 0.0 | |
| PRK00174 | 637 | PRK00174, PRK00174, acetyl-CoA synthetase; Provisi | 0.0 | |
| cd05966 | 602 | cd05966, ACS, Acetyl-CoA synthetase (also known as | 0.0 | |
| TIGR02188 | 625 | TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | 0.0 | |
| COG0365 | 528 | COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat | 0.0 | |
| cd05967 | 607 | cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | 0.0 | |
| PRK10524 | 629 | PRK10524, prpE, propionyl-CoA synthetase; Provisio | 0.0 | |
| PRK04319 | 570 | PRK04319, PRK04319, acetyl-CoA synthetase; Provisi | 1e-174 | |
| TIGR02316 | 628 | TIGR02316, propion_prpE, propionate--CoA ligase | 1e-163 | |
| cd05968 | 474 | cd05968, AACS_like, Uncharacterized acyl-CoA synth | 1e-156 | |
| pfam00501 | 412 | pfam00501, AMP-binding, AMP-binding enzyme | 1e-126 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 1e-125 | |
| cd04433 | 338 | cd04433, AFD_class_I, Adenylate forming domain, Cl | 1e-105 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-102 | |
| COG0318 | 534 | COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/ | 1e-88 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 6e-87 | |
| cd05943 | 616 | cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac | 1e-84 | |
| PTZ00237 | 647 | PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi | 2e-81 | |
| PRK03584 | 655 | PRK03584, PRK03584, acetoacetyl-CoA synthetase; Pr | 9e-79 | |
| cd05959 | 506 | cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and | 3e-74 | |
| cd05970 | 537 | cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s | 1e-73 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 7e-70 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 4e-65 | |
| PRK06187 | 521 | PRK06187, PRK06187, long-chain-fatty-acid--CoA lig | 1e-63 | |
| TIGR01217 | 652 | TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | 3e-61 | |
| cd05928 | 530 | cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co | 5e-60 | |
| cd05929 | 342 | cd05929, BACL_like, Bacterial Bile acid CoA ligase | 1e-56 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 2e-55 | |
| cd05911 | 487 | cd05911, Firefly_Luc_like, Firefly luciferase of l | 6e-53 | |
| cd05917 | 347 | cd05917, FACL_like_2, Uncharacterized subfamily of | 2e-52 | |
| PRK08316 | 523 | PRK08316, PRK08316, acyl-CoA synthetase; Validated | 6e-51 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 5e-50 | |
| cd05926 | 345 | cd05926, FACL_fum10p_like, Subfamily of fatty acid | 3e-49 | |
| TIGR02262 | 508 | TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil | 1e-48 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 7e-47 | |
| cd05904 | 504 | cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | 3e-46 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 6e-42 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 8e-42 | |
| PLN03051 | 499 | PLN03051, PLN03051, acyl-activating enzyme; Provis | 2e-40 | |
| PLN03052 | 728 | PLN03052, PLN03052, acetate--CoA ligase; Provision | 3e-40 | |
| TIGR01733 | 409 | TIGR01733, AA-adenyl-dom, amino acid adenylation d | 1e-39 | |
| cd05922 | 350 | cd05922, FACL_like_6, Uncharacterized subfamily of | 5e-39 | |
| PRK07656 | 513 | PRK07656, PRK07656, long-chain-fatty-acid--CoA lig | 6e-39 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 7e-39 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 8e-39 | |
| PRK08314 | 546 | PRK08314, PRK08314, long-chain-fatty-acid--CoA lig | 9e-39 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-38 | |
| TIGR03098 | 517 | TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form | 8e-38 | |
| PRK07529 | 632 | PRK07529, PRK07529, AMP-binding domain protein; Va | 2e-37 | |
| cd12117 | 474 | cd12117, A_NRPS_Srf_like, The adenylation domain o | 8e-37 | |
| PRK13391 | 511 | PRK13391, PRK13391, acyl-CoA synthetase; Provision | 2e-35 | |
| PRK08276 | 502 | PRK08276, PRK08276, long-chain-fatty-acid--CoA lig | 3e-34 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 2e-33 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 2e-33 | |
| COG1021 | 542 | COG1021, EntE, Peptide arylation enzymes [Secondar | 4e-33 | |
| PRK07798 | 533 | PRK07798, PRK07798, acyl-CoA synthetase; Validated | 2e-32 | |
| PRK13382 | 537 | PRK13382, PRK13382, acyl-CoA synthetase; Provision | 3e-32 | |
| PRK08008 | 517 | PRK08008, caiC, putative crotonobetaine/carnitine- | 9e-32 | |
| pfam11930 | 82 | pfam11930, DUF3448, Domain of unknown function (DU | 2e-31 | |
| COG1020 | 642 | COG1020, EntF, Non-ribosomal peptide synthetase mo | 5e-31 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 3e-30 | |
| PRK06087 | 547 | PRK06087, PRK06087, short chain acyl-CoA synthetas | 2e-29 | |
| TIGR03208 | 538 | TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate | 4e-29 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 4e-29 | |
| PRK06188 | 524 | PRK06188, PRK06188, acyl-CoA synthetase; Validated | 5e-29 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-29 | |
| PLN02574 | 560 | PLN02574, PLN02574, 4-coumarate--CoA ligase-like | 9e-29 | |
| cd05944 | 359 | cd05944, FACL_like_4, Uncharacterized subfamily of | 4e-28 | |
| PRK06839 | 496 | PRK06839, PRK06839, acyl-CoA synthetase; Validated | 4e-28 | |
| cd12114 | 476 | cd12114, A_NRPS_TlmIV_like, The adenylation domain | 1e-27 | |
| TIGR02275 | 526 | TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP | 1e-27 | |
| PRK06155 | 542 | PRK06155, PRK06155, crotonobetaine/carnitine-CoA l | 2e-27 | |
| PRK06710 | 563 | PRK06710, PRK06710, long-chain-fatty-acid--CoA lig | 4e-27 | |
| PRK07470 | 528 | PRK07470, PRK07470, acyl-CoA synthetase; Validated | 7e-27 | |
| PLN02246 | 537 | PLN02246, PLN02246, 4-coumarate--CoA ligase | 8e-27 | |
| PRK09088 | 488 | PRK09088, PRK09088, acyl-CoA synthetase; Validated | 1e-26 | |
| PRK06164 | 540 | PRK06164, PRK06164, acyl-CoA synthetase; Validated | 6e-26 | |
| cd05924 | 365 | cd05924, FACL_like_5, Uncharacterized subfamily of | 1e-25 | |
| COG1022 | 613 | COG1022, FAA1, Long-chain acyl-CoA synthetases (AM | 2e-25 | |
| TIGR01923 | 436 | TIGR01923, menE, O-succinylbenzoate-CoA ligase | 2e-25 | |
| PRK13390 | 501 | PRK13390, PRK13390, acyl-CoA synthetase; Provision | 5e-25 | |
| PRK07788 | 549 | PRK07788, PRK07788, acyl-CoA synthetase; Validated | 8e-25 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-24 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 2e-24 | |
| PRK07638 | 487 | PRK07638, PRK07638, acyl-CoA synthetase; Validated | 2e-24 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 1e-23 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 3e-23 | |
| PRK06145 | 497 | PRK06145, PRK06145, acyl-CoA synthetase; Validated | 4e-23 | |
| PRK12406 | 509 | PRK12406, PRK12406, long-chain-fatty-acid--CoA lig | 5e-23 | |
| PRK07786 | 542 | PRK07786, PRK07786, long-chain-fatty-acid--CoA lig | 6e-23 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 8e-23 | |
| PRK05605 | 573 | PRK05605, PRK05605, long-chain-fatty-acid--CoA lig | 1e-22 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 2e-22 | |
| cd05909 | 489 | cd05909, AAS_C, C-terminal domain of the acyl-acyl | 2e-22 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 4e-22 | |
| PRK06018 | 542 | PRK06018, PRK06018, putative acyl-CoA synthetase; | 5e-22 | |
| PRK12583 | 558 | PRK12583, PRK12583, acyl-CoA synthetase; Provision | 8e-22 | |
| PRK07787 | 471 | PRK07787, PRK07787, acyl-CoA synthetase; Validated | 1e-21 | |
| cd05923 | 495 | cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | 2e-21 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 1e-20 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 8e-20 | |
| cd05932 | 504 | cd05932, LC_FACS_bac, Bacterial long-chain fatty a | 1e-19 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 2e-19 | |
| TIGR03205 | 541 | TIGR03205, pimA, dicarboxylate--CoA ligase PimA | 4e-19 | |
| PRK07867 | 529 | PRK07867, PRK07867, acyl-CoA synthetase; Validated | 5e-19 | |
| PLN02860 | 563 | PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | 1e-18 | |
| PRK06060 | 705 | PRK06060, PRK06060, acyl-CoA synthetase; Validated | 1e-18 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-18 | |
| cd12118 | 520 | cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt | 1e-18 | |
| PLN02330 | 546 | PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | 2e-18 | |
| PRK12316 | 5163 | PRK12316, PRK12316, peptide synthase; Provisional | 4e-18 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 7e-18 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 4e-17 | |
| PRK12467 | 3956 | PRK12467, PRK12467, peptide synthase; Provisional | 7e-17 | |
| PRK08974 | 560 | PRK08974, PRK08974, long-chain-fatty-acid--CoA lig | 1e-16 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-16 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 2e-16 | |
| pfam13193 | 43 | pfam13193, DUF4009, Domain of unknown function (DU | 3e-16 | |
| cd05906 | 560 | cd05906, A_NRPS_TubE_like, The adenylation domain | 3e-16 | |
| PRK05852 | 534 | PRK05852, PRK05852, acyl-CoA synthetase; Validated | 5e-16 | |
| cd05939 | 474 | cd05939, hsFATP4_like, Fatty acid transport protei | 6e-16 | |
| PRK07008 | 539 | PRK07008, PRK07008, long-chain-fatty-acid--CoA lig | 7e-16 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 4e-15 | |
| PLN02479 | 567 | PLN02479, PLN02479, acetate-CoA ligase | 6e-15 | |
| PLN03102 | 579 | PLN03102, PLN03102, acyl-activating enzyme; Provis | 8e-15 | |
| PRK10252 | 1296 | PRK10252, entF, enterobactin synthase subunit F; P | 1e-14 | |
| PRK12492 | 562 | PRK12492, PRK12492, long-chain-fatty-acid--CoA lig | 1e-14 | |
| PRK13383 | 516 | PRK13383, PRK13383, acyl-CoA synthetase; Provision | 2e-14 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-14 | |
| PRK05677 | 562 | PRK05677, PRK05677, long-chain-fatty-acid--CoA lig | 3e-14 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 7e-14 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 8e-14 | |
| PRK07824 | 358 | PRK07824, PRK07824, O-succinylbenzoic acid--CoA li | 2e-13 | |
| cd05969 | 443 | cd05969, MACS_like_4, Uncharacterized subfamily of | 5e-13 | |
| cd05973 | 440 | cd05973, MACS_like_2, Uncharacterized subfamily of | 5e-13 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 5e-13 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 6e-13 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 7e-13 | |
| cd05936 | 468 | cd05936, FC-FACS_FadD_like, Prokaryotic long-chain | 9e-13 | |
| PRK13388 | 540 | PRK13388, PRK13388, acyl-CoA synthetase; Provision | 6e-12 | |
| cd05972 | 430 | cd05972, MACS_like, Medium-chain acyl-CoA syntheta | 1e-11 | |
| PRK05857 | 540 | PRK05857, PRK05857, acyl-CoA synthetase; Validated | 1e-11 | |
| PRK06178 | 567 | PRK06178, PRK06178, acyl-CoA synthetase; Validated | 2e-11 | |
| PRK05620 | 576 | PRK05620, PRK05620, long-chain-fatty-acid--CoA lig | 2e-11 | |
| PRK07445 | 452 | PRK07445, PRK07445, O-succinylbenzoic acid--CoA li | 2e-11 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 3e-11 | |
| cd05971 | 439 | cd05971, MACS_like_3, Uncharacterized subfamily of | 4e-11 | |
| cd05930 | 445 | cd05930, A_NRPS, The adenylation domain of nonribo | 5e-11 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 1e-10 | |
| cd12116 | 438 | cd12116, A_NRPS_Ta1_like, The adenylation domain o | 2e-10 | |
| cd05915 | 509 | cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase | 4e-10 | |
| cd05934 | 421 | cd05934, FACL_DitJ_like, Uncharacterized subfamily | 1e-09 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 1e-09 | |
| PRK03640 | 483 | PRK03640, PRK03640, O-succinylbenzoic acid--CoA li | 2e-09 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 2e-09 | |
| cd05919 | 436 | cd05919, BCL_like, Benzoate CoA ligase (BCL) and s | 4e-09 | |
| cd05918 | 447 | cd05918, A_NRPS_SidN3_like, The adenylation (A) do | 1e-08 | |
| PRK09274 | 552 | PRK09274, PRK09274, peptide synthase; Provisional | 1e-08 | |
| cd05903 | 437 | cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li | 2e-08 | |
| cd05910 | 455 | cd05910, FACL_like_1, Uncharacterized subfamily of | 3e-08 | |
| PRK08633 | 1146 | PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola | 4e-08 | |
| cd05974 | 433 | cd05974, MACS_like_1, Uncharacterized subfamily of | 5e-08 | |
| PRK05850 | 578 | PRK05850, PRK05850, acyl-CoA synthetase; Validated | 7e-08 | |
| cd05927 | 539 | cd05927, LC-FACS_euk, Eukaryotic long-chain fatty | 7e-08 | |
| cd05945 | 447 | cd05945, DltA, D-alanine:D-alanyl carrier protein | 1e-07 | |
| PTZ00216 | 700 | PTZ00216, PTZ00216, acyl-CoA synthetase; Provision | 1e-07 | |
| cd05938 | 535 | cd05938, hsFATP2a_ACSVL_like, Fatty acid transport | 1e-07 | |
| cd05920 | 483 | cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l | 2e-07 | |
| PRK13295 | 547 | PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig | 2e-07 | |
| TIGR02372 | 386 | TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase | 2e-07 | |
| cd05940 | 444 | cd05940, FATP_FACS, Fatty acid transport proteins | 3e-07 | |
| cd05941 | 430 | cd05941, MCS, Malonyl-CoA synthetase (MCS) | 4e-07 | |
| PRK08308 | 414 | PRK08308, PRK08308, acyl-CoA synthetase; Validated | 4e-07 | |
| PRK04813 | 503 | PRK04813, PRK04813, D-alanine--poly(phosphoribitol | 5e-07 | |
| cd12115 | 449 | cd12115, A_NRPS_Sfm_like, The adenylation domain o | 6e-07 | |
| cd05931 | 547 | cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | 1e-06 | |
| PLN02861 | 660 | PLN02861, PLN02861, long-chain-fatty-acid-CoA liga | 1e-06 | |
| cd05935 | 430 | cd05935, LC_FACS_like, Putative long-chain fatty a | 2e-06 | |
| cd05907 | 456 | cd05907, VL_LC_FACS_like, Long-chain fatty acid Co | 2e-06 | |
| PRK07514 | 504 | PRK07514, PRK07514, malonyl-CoA synthase; Validate | 2e-06 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 2e-06 | |
| PLN02387 | 696 | PLN02387, PLN02387, long-chain-fatty-acid-CoA liga | 3e-06 | |
| PRK09188 | 365 | PRK09188, PRK09188, serine/threonine protein kinas | 6e-06 | |
| PRK08162 | 545 | PRK08162, PRK08162, acyl-CoA synthetase; Validated | 8e-06 | |
| cd05921 | 559 | cd05921, FCS, Feruloyl-CoA synthetase (FCS) | 1e-05 | |
| PRK08315 | 559 | PRK08315, PRK08315, AMP-binding domain protein; Va | 2e-05 | |
| cd05912 | 407 | cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase | 5e-05 | |
| PRK07768 | 545 | PRK07768, PRK07768, long-chain-fatty-acid--CoA lig | 5e-05 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 8e-05 | |
| PRK12476 | 612 | PRK12476, PRK12476, putative fatty-acid--CoA ligas | 1e-04 | |
| PRK10946 | 536 | PRK10946, entE, enterobactin synthase subunit E; P | 2e-04 | |
| TIGR01734 | 502 | TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho | 2e-04 | |
| PRK06334 | 539 | PRK06334, PRK06334, long chain fatty acid--[acyl-c | 2e-04 | |
| cd05908 | 499 | cd05908, A_NRPS_MycA_like, The adenylation domain | 3e-04 | |
| PRK06814 | 1140 | PRK06814, PRK06814, acylglycerophosphoethanolamine | 4e-04 | |
| PRK08279 | 600 | PRK08279, PRK08279, long-chain-acyl-CoA synthetase | 5e-04 | |
| PRK08180 | 614 | PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe | 5e-04 | |
| PRK05691 | 4334 | PRK05691, PRK05691, peptide synthase; Validated | 6e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 8e-04 | |
| cd05914 | 448 | cd05914, FACL_like_3, Uncharacterized subfamily of | 0.001 | |
| cd05958 | 487 | cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | 0.002 | |
| cd12119 | 517 | cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth | 0.002 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 0.002 | |
| PRK07059 | 557 | PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig | 0.003 | |
| PRK08751 | 560 | PRK08751, PRK08751, putative long-chain fatty acyl | 0.003 | |
| cd05937 | 468 | cd05937, FATP_chFAT1_like, Uncharacterized subfami | 0.004 |
| >gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 1430 bits (3703), Expect = 0.0
Identities = 597/666 (89%), Positives = 637/666 (95%), Gaps = 1/666 (0%)
Query: 114 ILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKW 173
+LGE+L+SEEND+V PS DFS QALV SPQ+Y+EMYKRSV+DPAGFW+DIAS+FYWK+KW
Sbjct: 1 VLGESLASEENDLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKW 60
Query: 174 -GQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDAT 232
G VCSENLDVRKG + IEWFKGG TNICYNCLDRN+EAG GDK+AIYWE N+PG DA+
Sbjct: 61 EGDEVCSENLDVRKGPISIEWFKGGKTNICYNCLDRNVEAGNGDKIAIYWEGNEPGFDAS 120
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTYS+LL +VCQLANYLKD+GVKKGDAV+IYLPMLMELPIAMLACARIGAVHSVVFAGFS
Sbjct: 121 LTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFS 180
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++SLAQRI+DCKPKVVIT NAVKRGPK I+LKDIVDAALDE AK+G+SV +CLTYENQ A
Sbjct: 181 AESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLA 240
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
M RE+TKWQ+GRD+WWQDVVP YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY
Sbjct: 241 MKREDTKWQEGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 300
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
MV+TATTFKYAFDYKP+DVYWCTADCGWITGHSYVTYGPMLNGA+V+VFEGAP YPDSGR
Sbjct: 301 MVYTATTFKYAFDYKPTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGR 360
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532
WDIVDKYKVTIFYTAPTLVRSLMRDG+EYVTR+SRKSLRVLGSVGEPINPSAWRWFFNV
Sbjct: 361 CWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNV 420
Query: 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG EIEGECS
Sbjct: 421 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECS 480
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
GYLC+K SWPGAFRTLYGDHERYETTYFKPF GYYF+GDGCSRDKDGY+WLTGRVDDVIN
Sbjct: 481 GYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVIN 540
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSGHRIGTAEVESALVSHPQCAEAAVVG+EHEVKGQGIYAFVTLVEGVPYSEELRKSL+L
Sbjct: 541 VSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEELRKSLIL 600
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
VR QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL
Sbjct: 601 TVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 660
Query: 773 IALADC 778
IALAD
Sbjct: 661 IALADS 666
|
Length = 666 |
| >gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 1140 bits (2952), Expect = 0.0
Identities = 382/646 (59%), Positives = 469/646 (72%), Gaps = 18/646 (2%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
P +F+ AL+ ++Y +Y+ SVEDP GFWA+ A W + + LD
Sbjct: 4 PPAEFAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPF-----DTVLD--WNA 55
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
I+WF+ G N+ YNCLDR+++ GDKVAI WE +DPG +TY +L ++VC+ AN
Sbjct: 56 PFIKWFEDGELNVSYNCLDRHLKTR-GDKVAIIWEGDDPGDSRKITYRELHREVCRFANA 114
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
LK +GVKKGD V IY+PM+ E +AMLACARIGAVHSVVF GFS+++LA RI+D K+V
Sbjct: 115 LKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLV 174
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ RG K I LK VD AL C SV+ + T + W +GRD+WW
Sbjct: 175 ITADEGVRGGKPIPLKANVDEALANCP----SVEKVIVVRR----TGGDVDWVEGRDLWW 226
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
++V +CE E +DAEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ A T KY FDYK
Sbjct: 227 HELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKD 286
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
DVYWCTAD GW+TGHSY+ YGP+ NGA+ ++FEG P YPD GR W+++DK+KVTIFYTA
Sbjct: 287 GDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTA 346
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM++G+E+ +Y SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTE
Sbjct: 347 PTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTE 406
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGG MITPLPGA P KPGSAT P G+QP +VDE+G +EG G L IK WPG RT+
Sbjct: 407 TGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTI 466
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
YGDHER+ TYF F G YFTGDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV
Sbjct: 467 YGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 526
Query: 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
+HP+ AEAAVVG ++KGQGIYAFVTL G S+ELRK L VRK+IG A PD I
Sbjct: 527 AHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQ 586
Query: 729 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
+APGLPKTRSGKIMRRILRKIA + LGDTSTLADP VV++LI
Sbjct: 587 FAPGLPKTRSGKIMRRILRKIAEGEE-ILGDTSTLADPSVVEKLIE 631
|
Length = 637 |
| >gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme) | Back alignment and domain information |
|---|
Score = 1138 bits (2946), Expect = 0.0
Identities = 388/617 (62%), Positives = 461/617 (74%), Gaps = 15/617 (2%)
Query: 149 YKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208
YK S+EDP FWA+ A E W + W + LD +WF GG N YNCLDR
Sbjct: 1 YKESIEDPEEFWAEQAEELDWFKPW-----DKVLD-WSNPPFAKWFVGGKLNASYNCLDR 54
Query: 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM 268
+++AG G+KVAI WE T+TY +L ++VC+ AN LK +GVKKGD V IY+PM+
Sbjct: 55 HLKAGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIP 114
Query: 269 ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVD 328
ELPIAMLACARIGA+HSVVFAGFS+++LA RI D K K++IT++ RG K I LK+IVD
Sbjct: 115 ELPIAMLACARIGAIHSVVFAGFSAEALADRINDAKSKLLITADGGYRGGKVIPLKEIVD 174
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
AL++C SV+ + + T +GRD+WW D++ K CE E +DAED
Sbjct: 175 EALEKCP----SVEKVIVVKR----TGGEVPMVEGRDVWWHDLMAKASPYCEPEPMDAED 226
Query: 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448
PLF+LYTSGSTGKPKGV+HTTGGY+V+ ATTFKY FD P DVYWCTAD GWITGHSY+
Sbjct: 227 PLFILYTSGSTGKPKGVVHTTGGYLVYAATTFKYVFDIHPDDVYWCTADIGWITGHSYIV 286
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
YGP+ NGA+ V++EGAP YPD GR W+IV+KYKVTIFYTAPT +R LMR G+E+ ++
Sbjct: 287 YGPLANGATTVMYEGAPDYPDPGRWWEIVEKYKVTIFYTAPTAIRMLMRFGDEWPKKHDL 346
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
SLR+LGSVGEPINP AW W++ V+G RCPI DTWWQTETGG MITPLPGA P KPGSA
Sbjct: 347 SSLRLLGSVGEPINPEAWMWYYEVIGKERCPIVDTWWQTETGGHMITPLPGATPLKPGSA 406
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
T PF GV+P IVDE+G E+EG GYL IK WPG RT+YGDHERY TYF FPGYYF
Sbjct: 407 TRPFPGVEPAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHERYVKTYFSKFPGYYF 466
Query: 629 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688
TGDG RD+DGY+W+ GRVDDVINVSGHR+GTAEVESALVSHP AEAAVVG EVKG+
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526
Query: 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
IYAFVTL +GV S+ELRK L VRK+IG A PD+I + PGLPKTRSGKIMRRILRK
Sbjct: 527 AIYAFVTLKDGVEPSDELRKELKKHVRKEIGPIATPDEIIFVPGLPKTRSGKIMRRILRK 586
Query: 749 IASRQLDELGDTSTLAD 765
IA+ + +ELGDTSTL D
Sbjct: 587 IAAGE-EELGDTSTLED 602
|
Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602 |
| >gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase | Back alignment and domain information |
|---|
Score = 1062 bits (2749), Expect = 0.0
Identities = 382/636 (60%), Positives = 471/636 (74%), Gaps = 16/636 (2%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGIT 199
+ ++Y E+Y+ S+EDP FWA +A E W + + +V + +WF GG
Sbjct: 3 NLEQYKELYEESIEDPDKFWAKLARELLDWFKPF-TKVLDWSFPP-----FYKWFVGGEL 56
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N+ YNC+DR++EA DKVAI WE ++PG +TY +L ++VC+ AN LK +GVKKGD
Sbjct: 57 NVSYNCVDRHLEA-RPDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDR 115
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
V IY+PM+ E IAMLACARIGA+HSVVF GFS+++LA RI D K+VIT++ RG K
Sbjct: 116 VAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGK 175
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
I LK IVD AL++C +SV+ L T W +GRD+WW D++ K C
Sbjct: 176 VIPLKAIVDEALEKC---PVSVEHVLVVRR----TGNPVPWVEGRDVWWHDLMAKASAYC 228
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
E E +D+EDPLF+LYTSGSTGKPKGVLHTTGGY+++ A T KY FD K D++WCTAD G
Sbjct: 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVG 288
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
WITGHSY+ YGP+ NGA+ V+FEG PTYPD GR W+I++K+KVTIFYTAPT +R+LMR G
Sbjct: 289 WITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLG 348
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+E+V ++ SLR+LGSVGEPINP AW W++ VVG RCPI DTWWQTETGG MITPLPG
Sbjct: 349 DEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPG 408
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEG-ECSGYLCIKSSWPGAFRTLYGDHERYETT 618
A P KPGSAT PFFG++P +VDE+G +EG GYL IK WPG RT+YGDHER+ T
Sbjct: 409 ATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
YF PFPGYYFTGDG RDKDGY W+TGRVDDVINVSGHR+GTAE+ESALVSHP AEAAV
Sbjct: 469 YFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAV 528
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
VG+ ++KGQ IYAFVTL +G +ELRK L VRK+IG A PDKI + PGLPKTRS
Sbjct: 529 VGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRS 588
Query: 739 GKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
GKIMRR+LRKIA+ + + LGDTSTL DP VV++LI
Sbjct: 589 GKIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIE 624
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625 |
| >gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 714 bits (1846), Expect = 0.0
Identities = 245/571 (42%), Positives = 323/571 (56%), Gaps = 43/571 (7%)
Query: 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD 251
+WF+GG N+ N LDR++EA D AI ++ + G+ LTY L ++V +LAN LKD
Sbjct: 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFD-GEDGLFRELTYGDLRREVARLANALKD 59
Query: 252 IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
+G KGD V IY+P E IA+LA ARIGA+ +VV G S++++A RI D PKV+I
Sbjct: 60 LGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIAD 119
Query: 312 NAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371
+ R K I L + DA L +W+ +
Sbjct: 120 DGTFRNGKEIALLEDADAVLSSVVVV------------------------PRLGLWYDEA 155
Query: 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
V K K E E + A+DPLFLLYTSG+TGKPKG++H+ GGY+V T K+ D P D
Sbjct: 156 VEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDR 215
Query: 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
+W ++D GWI G Y + P+ +GA+ V+++G P Y R W+ ++KYKVTIF T+PT
Sbjct: 216 FWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTF 274
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+R LM+ G Y SLRVLGS GEP+NP A+ WF++ +G I D + QTETG
Sbjct: 275 LRRLMKLGL--GEPYDLSSLRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGM 329
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
I P P K GS+ P G VD++G + G L ++ WPG T + D
Sbjct: 330 GFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG-VGELVVRLPWPGMALTYWND 385
Query: 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671
ERY+ YF +Y TGD RD+DGY WL GR DDVI VSG RIG E+ES L++HP
Sbjct: 386 PERYKEAYFG---RWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHP 442
Query: 672 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731
AEAAVVGV KGQ + AFV L GV + EL + + V + IG A P KI +
Sbjct: 443 AVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVD 501
Query: 732 GLPKTRSGKIMRRILRKIASRQLDELGDTST 762
LPKT SGKI RR+LRKI + D ST
Sbjct: 502 ELPKTASGKIQRRLLRKIL----HKGEDLST 528
|
Length = 528 |
| >gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE) | Back alignment and domain information |
|---|
Score = 634 bits (1637), Expect = 0.0
Identities = 255/626 (40%), Positives = 364/626 (58%), Gaps = 26/626 (4%)
Query: 154 EDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG 213
++P FWA+ A+ W + W + + + N + WF GG N+CYN +DR+IE G
Sbjct: 1 KEPEAFWAEQANLIDWYKPWEKVLDNSNPPFTR------WFVGGRLNLCYNAVDRHIEDG 54
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GD++A+ +++ G T TY++L +V +LA L+ +GV KGD VIIY+PM+ E IA
Sbjct: 55 RGDQIALIYDSPVTGTKRTYTYAELYDEVSRLAGVLRKLGVVKGDRVIIYMPMIPEAVIA 114
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
MLACARIGA+HSVVF GF+S LA RI D KPK+++T++ + + K ++D AL
Sbjct: 115 MLACARIGAIHSVVFGGFASKELASRIDDAKPKLIVTASFGIEPGRVVPYKPLLDKAL-- 172
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
S L + GRD+ W +++ K + V++ DPL++L
Sbjct: 173 -ELSQHKPHKVLILNRGQVPAPL----KPGRDLDWAELMAKAR-PVDCVPVESTDPLYIL 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
YTSG+TGKPKGV+ TGGY V + + + KP DV+W +D GW+ GHSY+ YGP+L
Sbjct: 227 YTSGTTGKPKGVVRDTGGYAVALKWSMRNIYGIKPGDVFWAASDVGWVVGHSYIVYGPLL 286
Query: 454 NGASVVVFEGAPTY-PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD--GNEYVTRYSRKS 510
+GA+ V++EG P PD+G W ++++Y V +TAPT +R++ + EY+ +Y S
Sbjct: 287 HGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAIRAIRKQDPDGEYIKKYDLSS 346
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG--AWPQKPGSA 568
LR L GE ++ W +G P+ D WWQTETG + G P KPGS
Sbjct: 347 LRALFLAGERLDSPTLEWIEKTLG---VPVIDHWWQTETGWPITANCVGLELLPIKPGSP 403
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETTYFKPFPGYY 627
P G ++DE G E+ G + IK PG TL+GD ER++ Y FPGYY
Sbjct: 404 GKPVPGYDVQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYY 463
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD +D+DGY ++ GR DDVINV+GHR+ T E+E +++ HP AE AVVGV E+KG
Sbjct: 464 DTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKG 523
Query: 688 QGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
Q V L + + L +V VR+QIG AA + + LPKTRSGKI+RR L
Sbjct: 524 QVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTRSGKILRRTL 583
Query: 747 RKIASRQLDELGDTSTLADPGVVDQL 772
RKIA ++ D ST+ DP V+D++
Sbjct: 584 RKIA--DGEDYKDPSTIEDPSVLDEI 607
|
PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607 |
| >gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 571 bits (1475), Expect = 0.0
Identities = 239/642 (37%), Positives = 365/642 (56%), Gaps = 32/642 (4%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCS-ENLDVRKGNVKIEWFKGGITNI 201
Y E Y+RS++DP FWA+ A W+ + +V N + WF GG TN+
Sbjct: 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPF-TQVLDYSNPPFAR------WFVGGRTNL 54
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
C+N +DR++ +++A+ + + + T T+ QL +V ++A L+ +GV++GD V+
Sbjct: 55 CHNAVDRHLAKR-PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVL 113
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
IY+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D KP ++++++A RG K +
Sbjct: 114 IYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVV 173
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCE 380
K ++D A+ V L + A GRD+ + + ++ +
Sbjct: 174 PYKPLLDEAIALAQHKPRHV---LLVDRGLAPMA----RVAGRDVDYATLRAQHLGARVP 226
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VEW+++ +P ++LYTSG+TGKPKGV TGGY V AT+ F K + ++C +D GW
Sbjct: 227 VEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGW 286
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ GHSY+ Y P+L G + +++EG PT PD+G W IV+KYKV ++APT +R L +
Sbjct: 287 VVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDP 346
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG- 559
+ ++ SLR L GEP++ W +G P+ D +WQTETG ++ G
Sbjct: 347 ALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVIDNYWQTETGWPILAIARGV 403
Query: 560 -AWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYE 616
P + GS P +G +++E G G L I+ PG +T++GD +R+
Sbjct: 404 EDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFV 463
Query: 617 TTYFKPF-PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
TY+ F Y T D RD DGY+++ GR DDVINV+GHR+GT E+E ++ SHP AE
Sbjct: 464 KTYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAE 523
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEE-----LRKSLVLAVRKQIGAFAAPDKIHWA 730
AVVGV+ +KGQ AFV + ++ L K ++ V Q+GA A P ++ +
Sbjct: 524 VAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFV 583
Query: 731 PGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
LPKTRSGK++RR ++ IA + + GD +T+ DP + Q+
Sbjct: 584 SALPKTRSGKLLRRAIQAIAEGR--DPGDLTTIEDPAALQQI 623
|
Length = 629 |
| >gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 513 bits (1323), Expect = e-174
Identities = 237/589 (40%), Positives = 322/589 (54%), Gaps = 53/589 (8%)
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
+V K + W + G NI Y +DR+ + G DKVA+ + D TY +L +
Sbjct: 29 EVEK---EFSWLETGKVNIAYEAIDRHADGGRKDKVALRYL--DASRKEKYTYKELKELS 83
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
+ AN LK++GV+KGD V I++P + EL A+L + GA+ +F F +++ R+ D
Sbjct: 84 NKFANVLKELGVEKGDRVFIFMPRIPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLED 143
Query: 303 CKPKVVITSNAV-KRGPKA--IHLKDI--VDAALDECAKSGISVDVCLTYENQSAMTREN 357
+ KV+IT+ A+ +R P LK + V ++E T + + M +
Sbjct: 144 SEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPG---------TLDFNALMEQA- 193
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ ++EW D ED L YTSGSTGKPKGVLH + H
Sbjct: 194 ------------------SDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQ 235
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T KY D DVYWCTAD GW+TG SY + P LNGA+ V+ G R + I+
Sbjct: 236 TG-KYVLDLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRF---SPERWYRIL 291
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
+ YKVT++YTAPT +R LM G++ V +Y SLR + SVGEP+NP RW V G
Sbjct: 292 EDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFG--- 348
Query: 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597
PI D WW TETGG MI P A KPGS P G++ IVD++G E+ G L I
Sbjct: 349 LPIHDNWWMTETGGIMIANYP-AMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAI 407
Query: 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 657
K WP R ++ + E+YE+ YF +Y +GD D+DGY W GRVDDVI SG R
Sbjct: 408 KKGWPSMMRGIWNNPEKYES-YFAG--DWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGER 464
Query: 658 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 717
+G EVES L+ HP AEA V+G V+G+ I AFV L G SEEL++ + V+K
Sbjct: 465 VGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKG 524
Query: 718 IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLD-ELGDTSTLAD 765
+GA AAP +I + LPKTRSGKIMRR+L+ + +L GD ST+ D
Sbjct: 525 LGAHAAPREIEFKDKLPKTRSGKIMRRVLK---AWELGLPEGDLSTMED 570
|
Length = 570 |
| >gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase | Back alignment and domain information |
|---|
Score = 486 bits (1252), Expect = e-163
Identities = 240/640 (37%), Positives = 365/640 (57%), Gaps = 30/640 (4%)
Query: 144 KYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICY 203
+Y E Y+RS+E P FWA+ A W+ + + N + WF GG TN+C+
Sbjct: 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQRILDYSNPPFAR------WFAGGRTNLCH 55
Query: 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIY 263
N LDR+++ G+++A+ +++ G + TLTY QL ++V A+ L+ +GV +GD V+IY
Sbjct: 56 NALDRHLDER-GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIY 114
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM+ E AMLACARIGA+HSVVF GF+S SLA RI D PK++++++A RG K I
Sbjct: 115 MPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPY 174
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVE 382
K ++DAA+ E V L + M GRD+ + + ++ + VE
Sbjct: 175 KPLLDAAIAEAQHP--PPHVLLVDRGLAPMRL-----IPGRDVDYAALRTQHEDAQVPVE 227
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
W+++ +P ++LYTSG+TGKPKGV GGY V A + F + V + +D GW+
Sbjct: 228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVV 287
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
GHSY+ Y P+L GA+ V++EG PT PD G W IV++Y V ++APT +R L + +
Sbjct: 288 GHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAW 347
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ ++ SL L GEP++ W + +G P+ D +WQTETG ++ +PG
Sbjct: 348 LRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGK---PVIDNYWQTETGWPVLAIMPGLDL 404
Query: 563 QKP--GSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW-PGAFRTLYGDHERYETT 618
+ GS P +G ++DE G G L + PG T++GD R+ T
Sbjct: 405 KPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT 464
Query: 619 YFKPFPG-YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
Y+ F Y + D RD+DGY ++ GR DDVINV+GHR+GT E+E ++ SHP AE A
Sbjct: 465 YWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVA 524
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYSE-----ELRKSLVLAVRKQIGAFAAPDKIHWAPG 732
VVGV E+KGQ F L E + + ++ V +Q+GA A P ++++
Sbjct: 525 VVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAA 584
Query: 733 LPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772
LPKTRSGK++RR ++ +A + + GD +T+ DPG ++Q+
Sbjct: 585 LPKTRSGKLLRRSIQALAEGR--DPGDLTTIDDPGALEQV 622
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628 |
| >gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase | Back alignment and domain information |
|---|
Score = 463 bits (1193), Expect = e-156
Identities = 201/539 (37%), Positives = 275/539 (51%), Gaps = 67/539 (12%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G T TYS+L ++V +LA+ L +G+ KGD V IY+PM+ E +A+LA A+IGA+ +
Sbjct: 3 GSVRTWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPI 62
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
F+GF DA + V +
Sbjct: 63 FSGFG----------------------------------PDAVATRLQDAEAKVLIT--- 85
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
R G+ + +D DP ++YTSG+TGKPKG +H
Sbjct: 86 --ADGFLRR------GKRVDLKD-----------------DPAMIIYTSGTTGKPKGTVH 120
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
T G+ V A + FD KP D D GW+ G ++ G +L GA++V++EGAP Y
Sbjct: 121 THAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMG-PWLVLGGLLLGATIVLYEGAPDY 179
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWR 527
PD R W IV+++KVT +PTL+R+L G+ V + SLRVLGS GEP +P +W
Sbjct: 180 PDPDRLWRIVERHKVTHLGLSPTLIRALRAHGDAPVEGHDLSSLRVLGSTGEPWDPESWL 239
Query: 528 WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI 587
W F VG R PI + TE G ++ +P P KP S P G+ +VDE G +
Sbjct: 240 WLFERVGGGRAPIINYSGGTEISGGILGNVPIR-PIKPCSFNGPSPGMDADVVDEDGRPV 298
Query: 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV 647
GE G L +++ WPG R + D ERY TY+ FPG + GD D+DGY ++ GR
Sbjct: 299 RGE-VGELVVRAPWPGMTRGFWRDPERYLETYWSRFPGVWVHGDWALVDEDGYWYILGRS 357
Query: 648 DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELR 707
DD I V+G R+G AE+ES L SHP AEAA +GV VKG+ I FV L GV S L
Sbjct: 358 DDTIKVAGKRVGPAEIESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALE 417
Query: 708 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADP 766
L V +G P ++H+ LPKTR+GKIMRR++R Q GD S+L +P
Sbjct: 418 AELADHVGDALGKPFRPREVHFVSDLPKTRNGKIMRRVIRAAYLGQ--PPGDLSSLENP 474
|
This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474 |
| >gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-126
Identities = 135/445 (30%), Positives = 204/445 (45%), Gaps = 33/445 (7%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY +L ++ +LA L+ +GV GD V I LP E +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPA 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ LA + D + KV+IT + + + LK +V AL
Sbjct: 61 ERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIV------------------- 101
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+G D+ +++ + VD +D +++YTSG+TGKPKGV+ T +
Sbjct: 102 ----GDDGEGLDLLDDELLAGASAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLL 157
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A + V G + +GP+L G ++V+ P R
Sbjct: 158 ALAAGLAERFGLTPGDRVLLLLP--LHFDGSVWEIFGPLLAGGTLVLVPKFTLDPA--RL 213
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
D+++KYKVT+ Y PTL+R L++ E +Y SLR++ S GEP+ P R
Sbjct: 214 LDLIEKYKVTVLYGVPTLLRLLLKAPEE--KKYDLSSLRLVLSGGEPLPPELLRRLRERF 271
Query: 534 GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
G P+ + + TET LPG KPGS P GV+ ++DE+G + G
Sbjct: 272 G--GVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVG 329
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 653
LCI+ PG R D E + + G Y TGD D+DGY + GR DD + +
Sbjct: 330 ELCIRG--PGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKI 387
Query: 654 SGHRIGTAEVESALVSHPQCAEAAV 678
G RI E+E+ L+ HP AEAAV
Sbjct: 388 RGERIEPGEIEAVLLEHPGVAEAAV 412
|
Length = 412 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 382 bits (982), Expect = e-125
Identities = 178/368 (48%), Positives = 224/368 (60%), Gaps = 17/368 (4%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
D EDP L +TSG+TGKPKGVLH + H AT +Y D +P DVYWCTAD GW+TG
Sbjct: 87 DPEDPALLHFTSGTTGKPKGVLHVHRAVVAHYATA-RYVLDLRPDDVYWCTADPGWVTGT 145
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
SY P+LNG ++VV EG D+ R + I+++ KVT++YTAPT +R LMR G E
Sbjct: 146 SYGIIAPLLNGVTLVVDEGEF---DAERWYGILEEEKVTVWYTAPTALRMLMRAGPELAA 202
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
RY SLR + SVGEP+NP W V+G PI DTWWQTETG MI PG P K
Sbjct: 203 RYDLSSLRHIASVGEPLNPEVVVWGEKVLG---MPIHDTWWQTETGAIMIANYPGI-PVK 258
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PGS P G++ +++ G + G L +K WP FR G+ ERY
Sbjct: 259 PGSMGRPLPGIEAAVIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYA---- 314
Query: 621 KPFP-GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
F G+Y TGD RD+DGY W GR DDVI +GH +G EVESAL+ HP AEA V+
Sbjct: 315 SSFVDGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVI 374
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
G V G+ + AFV+L G SEELR+ L+ R+++GA AP +IH+ LPKTRSG
Sbjct: 375 GKPDPVAGEIVKAFVSLRPGFEPSEELRRELLTFARQRLGAAVAPREIHFVDNLPKTRSG 434
Query: 740 KIMRRILR 747
KIMRR+L+
Sbjct: 435 KIMRRLLK 442
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I | Back alignment and domain information |
|---|
Score = 325 bits (834), Expect = e-105
Identities = 122/355 (34%), Positives = 182/355 (51%), Gaps = 17/355 (4%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
DP F+LYTSG+TGKPKGV+ + + + + A DV + G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQ-AIGLTEGDVLLSVLPLFHVVGGGSG 59
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYS 507
G +L G +VV++EG P P S +++++Y+VT+ + PTL +L + + S
Sbjct: 60 LLGALLAGGTVVLYEGFPF-PLSF--LELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLS 116
Query: 508 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
SLR+L S GEP++P F G PI + + TET + P + +KPG+
Sbjct: 117 --SLRLLISGGEPLSPELLERFEERPG---APILEGYGLTETSVV-TSTNPDSELKKPGT 170
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ +VDE+G + G L ++ W + + + ETT G+Y
Sbjct: 171 VGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWV--MKGYWNN--PPETTAAATEDGWY 226
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD D++GY ++TGR D+I V G + AEVES L+ HP AEAAVVGV E +G
Sbjct: 227 RTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPAVAEAAVVGVPDEDRG 286
Query: 688 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
+ I AFV L G ++ L + L +R+++ + P I + LPKT SGKI
Sbjct: 287 ERIVAFVVLRPG---ADALAEELKAHLRERLAPYKVPRVIEFVDELPKTASGKID 338
|
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = e-102
Identities = 147/367 (40%), Positives = 196/367 (53%), Gaps = 16/367 (4%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP L +TSG+TG PK VLHT Y + T Y D +P D++W AD GW G
Sbjct: 78 TSADDPALLYFTSGTTGLPKMVLHTHS-YPLGHLVTGAYWLDLRPDDLHWTIADPGWAKG 136
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ P L GA+V V+ G D+ R+ +++++Y VT F PT R L++ +
Sbjct: 137 AWSSLFAPWLLGAAVFVYHGRRF--DAERTLELLERYGVTTFCAPPTAYRMLLQQD---L 191
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
+ Y LR + S GEP+NP W+ G PI D + QTETG ++ PG
Sbjct: 192 SSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTETG-LLVANFPGM-EV 246
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WPGAFRTLYGDHERYETTYFK 621
KPGS P G + I+D++G E+ G + ++ PG FR D E+ E T
Sbjct: 247 KPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRG 306
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
+Y TGD +D+DGY W GR DDVI SG+RIG EVESAL+ HP AEAAVVG
Sbjct: 307 ---DWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGS 363
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
V+G+ + AFV L G SEEL K L V+K+ + P +I + LPKT SGKI
Sbjct: 364 PDPVRGEVVKAFVVLAPGYQPSEELAKELQEHVKKRTAPYKYPREIEFVEELPKTVSGKI 423
Query: 742 MRRILRK 748
R LR
Sbjct: 424 RRVELRA 430
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 289 bits (741), Expect = 1e-88
Identities = 158/536 (29%), Positives = 231/536 (43%), Gaps = 39/536 (7%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ G LTY +L ++ +LA L+ +GVK GD V I LP E IA
Sbjct: 25 PDRPALI----FLGRGGRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAF 80
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R GAV + + LA + D KV+ITS +++A +
Sbjct: 81 LAALRAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAE---------FAALLEAVAEAL 131
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW-VDAEDPLFLL 393
+ + V D I + + + P VD +D FLL
Sbjct: 132 PVVLVVLLVGDA--------------DDRLPITLEALAAEGPGPDADARPVDPDDLAFLL 177
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
YTSG+TG PKGV+ T + + A P DV I G P+
Sbjct: 178 YTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPL 237
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L G ++V+ P D +++KYKVT+ PT +R L+ + + S SLR
Sbjct: 238 LGGGTLVLLSPEP--FDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSS-SLR 294
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF 572
++ S G P+ P F G I + + TET + P KPGS P
Sbjct: 295 LVLSGGAPLPPELLERFEERFG--PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPL 352
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
GV+ IVD G E+ G + ++ P + + E + + G+ TGD
Sbjct: 353 PGVEVRIVDPDGGEVLPGEVGEIWVRG--PNVMKGYWNRPEATAEAFDED--GWLRTGDL 408
Query: 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692
D+DGY ++ GR+ D+I G I E+E+ L HP AEAAVVGV E G+ + A
Sbjct: 409 GYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVA 468
Query: 693 FVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
V L G +E + L +RK++ + P + + LP+T SGKI RR LR+
Sbjct: 469 VVVLKPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALRE 523
|
Length = 534 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 6e-87
Identities = 145/369 (39%), Positives = 195/369 (52%), Gaps = 23/369 (6%)
Query: 387 EDPLFLLYTSGSTGKPKGV------LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+D +YTSG+TG PKGV L YM +YA D + DV+W AD GW
Sbjct: 88 DDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYM-------RYAIDLRDDDVFWNIADPGW 140
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
G Y GP+ G + V EG T ++ +D++++ VT F +PT R LM G
Sbjct: 141 AYGLYYAITGPLAMGITTVFLEGGFTAENT---YDVLERLGVTNFAGSPTAYRMLMAAGA 197
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ R K LRV S GEP+NP RWF +G I D + QTETG + A
Sbjct: 198 DAAARIKLK-LRVASSAGEPLNPEVVRWFQANLG---VTIHDHYGQTETGMPVGNHHALA 253
Query: 561 WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWPGAFRTLYGDHERYETTY 619
+ GS P G + ++D+ G + G L I +S P + + Y D E T
Sbjct: 254 HEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDP--EKTA 311
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
+Y TGD RD+DGY W GR DDVI +G+RIG +VESAL+ HP AEAAVV
Sbjct: 312 ELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPFDVESALLEHPAVAEAAVV 371
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
GV ++G+ + AFV L EG S+EL + L L V+K++ A A P ++ + P LPKT SG
Sbjct: 372 GVPDPLRGEIVKAFVVLKEGYAGSDELAEELQLFVKKRLSAHAYPREVEFVPALPKTPSG 431
Query: 740 KIMRRILRK 748
KI R +LR+
Sbjct: 432 KIQRFLLRQ 440
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS) | Back alignment and domain information |
|---|
Score = 281 bits (720), Expect = 1e-84
Identities = 178/631 (28%), Positives = 265/631 (41%), Gaps = 69/631 (10%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK------EKWGQRVCSENLDVRKGNVKIEWFKGGI 198
Y +++ SVED A FW + W K V WF G
Sbjct: 8 YHALWRWSVEDLAAFWESV-----WDFFDVIGSKGYVVVLDG-----DIMPGARWFPGAR 57
Query: 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258
N N L D AIY D +++++L QV +LA L+D+GVK GD
Sbjct: 58 LNYAENLLRH----ADNDPAAIYAAGEDGERR-EISWAELRSQVARLAAALRDLGVKPGD 112
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
V YLP + E IAMLA A IGA+ S F +++ R +PKV+ +
Sbjct: 113 RVAGYLPNVPEAVIAMLATASIGAIWSSCSPDFGVEAVLDRFGQIEPKVLFAVDGYVYNG 172
Query: 319 KAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
K + E K S+ V + S K+ +W
Sbjct: 173 KEHD----RREKIAEIVKGLPSLEAVVVVPYLSSDAQPAALKFSALTLLWSLAGDR--AA 226
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG--------YMVHTATTFKYAFDYKPS 429
E E + + PL++LY+SG+TG PK ++H GG + +H D +P
Sbjct: 227 PLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGTLLQHLKEHGLHC--------DLRPG 278
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
D + GW+ + V +L+GA++V+++G+P YPD W + K +TIF T+
Sbjct: 279 DRLFYYTTTGWMMWNWLV--SGLLSGATLVLYDGSPLYPDPDVLWRLAAKLGITIFGTSA 336
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 549
+ +L + G E + SLR + S G P+ P + W ++ V SD W + +
Sbjct: 337 KYLDALEKAGIEPGRTHDLSSLRTILSTGSPLPPEGFDWVYSHVK------SDVWLASIS 390
Query: 550 GGFMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
GG T + G + P G G+ DE+G + GE G L +P
Sbjct: 391 GG---TDICGCFVGGNPTLPVYRGEIQCRGLGMAVEAFDEEGKPVIGE-VGELVCTKPFP 446
Query: 603 GAFRTLY----GDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 658
LY D RY YF FPG + GD G + GR D +N G RI
Sbjct: 447 S--MPLYFWNDPDGSRYRDAYFDTFPGVWRHGDWIKITPHGGVIIYGRSDATLNPGGVRI 504
Query: 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 718
GTAE+ + P+ ++ VVG E + + + FV L EGV + L K + A+R +
Sbjct: 505 GTAEIYRVVEKIPEVEDSLVVGQEVDDGDERMPLFVKLREGVTLDDALVKRIRSAIRAAL 564
Query: 719 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749
P +I P +P T SGK + ++KI
Sbjct: 565 SPRHVPAEIIAVPDIPYTLSGKKVEVAVKKI 595
|
AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616 |
| >gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 273 bits (699), Expect = 2e-81
Identities = 180/646 (27%), Positives = 308/646 (47%), Gaps = 72/646 (11%)
Query: 142 PQKYLEMYKRSVEDPAGFWADIASEF-YWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
P Y + +P FW ++A ++ +W +K +V S + + +WFKGG N
Sbjct: 7 PFDYENDSNYANSNPESFWDEVAKKYVHW-DKMYDKVYSGD------EIYPDWFKGGELN 59
Query: 201 ICYNCLDRNIEAGLG-DKVAIYWEANDPGVDAT--LTYSQLLQQVCQLANYLKDIGVKKG 257
CYN LD +++ L D+ A+ +E P + T LTY QL ++VC+ + L ++ + K
Sbjct: 60 TCYNVLDIHVKNPLKRDQDALIYEC--PYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKN 117
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN----- 312
D V+IY+ +E IAML+CARIGA H V+F G+S SL RI PK++IT+N
Sbjct: 118 DNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILN 177
Query: 313 --AVKRGP---KAIHLK-------------DIVDAALDECAKSGISVDVCLTYENQSAMT 354
+ P +AI L DI + + ++ ++ L++ ++
Sbjct: 178 DEIITFTPNLKEAIELSTFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEIKKI 237
Query: 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV 414
+EN + P Y E V++ PL++LYTSG+TG K V+ + G ++V
Sbjct: 238 KENNQ------------SPFY----EYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLV 281
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS- 473
++ + V + + GW++ H ++ YG + G + V+FEG
Sbjct: 282 GLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFL-YGSLSLGNTFVMFEGGIIKNKHIEDD 340
Query: 474 -WDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
W+ ++K+KVT T P +R L++ + ++Y +L+ + GE I S +
Sbjct: 341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI 400
Query: 530 FNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSAT-FPFFGVQPVIVDEKGVEI 587
N + + S + QTE G IT L P +AT P ++P I+ E G E+
Sbjct: 401 ENKL---KIKSSRGYGQTEIG---ITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKEL 454
Query: 588 EGECSGYLCIKSSWPGAF-RTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR 646
G + K P +F T Y + E+++ + K FPGYY +GD +D++GY+ + R
Sbjct: 455 NVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSK-FPGYYNSGDLGFKDENGYYTIVSR 513
Query: 647 VDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-- 704
DD I +SG+++ +E++++ HP E +G+ + L +
Sbjct: 514 SDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQDQSNQSID 573
Query: 705 --ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
+L+ + + + I + A KI LPKT++GKI R+I+ K
Sbjct: 574 LNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISK 619
|
Length = 647 |
| >gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 266 bits (682), Expect = 9e-79
Identities = 185/660 (28%), Positives = 281/660 (42%), Gaps = 73/660 (11%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWK-EKWGQRVCSEN--LDVRKGNVKIEWFKGGITNI 201
Y +++ SVED FW + F V + R WF G N
Sbjct: 36 YAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTVVLAGRRMPGAR-------WFPGARLNY 88
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
N L R+ D+ AI + G L++++L +QV LA L+ +GV GD V
Sbjct: 89 AENLL-RH---RRDDRPAI-IFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVA 143
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
YLP + E +AMLA A +GA+ S F + R +PKV+I + + G KA
Sbjct: 144 AYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAF 203
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK-CE 380
+ V A L S V V + Y +A W+D + E
Sbjct: 204 DRRAKV-AELRAALPSLEHV-VVVPYLGPAAAAAALPGALL-----WEDFLAPAEAAELE 256
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV--------HTATTFKYAFDYKPSDVY 432
E V + PL++LY+SG+TG PK ++H GG ++ H D P D +
Sbjct: 257 FEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC--------DLGPGDRF 308
Query: 433 -WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491
W T CGW+ + V +L GA++V+++G+P YPD WD+ + VT+F T+
Sbjct: 309 FWYTT-CGWMMWNWLV--SGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKY 365
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551
+ + + G + +LR +GS G P+ P + W + V +D W + +GG
Sbjct: 366 LDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVK------ADVWLASISGG 419
Query: 552 FMITPLPGAW-------PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
T + + P G G+ DE G + GE G L +P
Sbjct: 420 ---TDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPVVGE-VGELVCTKPFPS- 474
Query: 605 FRTLY----GDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGT 660
L D RY YF FPG + GD + G + GR D +N G RIGT
Sbjct: 475 -MPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGT 533
Query: 661 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA 720
AE+ + + P+ ++ V+G E + FV L EGV + LR + +R +
Sbjct: 534 AEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSP 593
Query: 721 FAAPDKIHWAPGLPKTRSGKIM----RRILRKIASRQLDELGDTSTLADPGVVDQLIALA 776
PDKI P +P+T SGK + +++L R + + + LA+P +D LA
Sbjct: 594 RHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG---RPVKKAVNRDALANPEALDWFADLA 650
|
Length = 655 |
| >gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase) | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 3e-74
Identities = 158/552 (28%), Positives = 244/552 (44%), Gaps = 49/552 (8%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
I N LDR++ G GDK+A+Y D +LTY +L ++V + N L+++G+++
Sbjct: 2 IFNAAVYFLDRHLNEGRGDKIALY----YD--DGSLTYGELQEEVNRWGNALRELGIERE 55
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+ V++ L E P A +IGAV + + D + D + +V++ S
Sbjct: 56 NRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDDYRYYLNDSRARVLVISEE---- 111
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
L +++ AL + + + + ++
Sbjct: 112 -----LWEVLKPALQK-----------DPHLRHVIVVGGAGPGAL----SYAQLIATAAE 151
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTA 436
+ E A+D F LY+SGSTG+PKGV+H M+ TA + K DV + A
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHD-MLVTAEAYAKNVLGITEDDVVFSAA 210
Query: 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496
+ G Y P+ GA+ V+ PT PD + +++YK T+F+ PTL +++
Sbjct: 211 KLFFAYGLGNGLYFPLSVGATTVLMPERPT-PD--AVFATIERYKPTVFFGVPTLYAAML 267
Query: 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
SLR+ S GE + + + G I D TE ++
Sbjct: 268 AAPE--KPERDLSSLRLCVSAGEALPAEIGYRWKELFG---LEILDGIGSTEMLHIFLSN 322
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
PGA K G++ P G + +VDE G E+ G L ++ + + E+
Sbjct: 323 RPGA--VKYGTSGKPVPGYEVKLVDEDGEEVADGEIGELWVRG--DSSAAGYWNRREKTR 378
Query: 617 TTYFKPFPGYYF-TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
T F G + TGD RD+DGY+W GR DD++ VSG + EVE AL+ HP E
Sbjct: 379 ET----FVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIWVSPFEVEDALLQHPAVLE 434
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735
AAVVG E E AFV L +G S EL L V+ ++ + P I + LPK
Sbjct: 435 AAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDKLAPYKYPRWIEFVDELPK 494
Query: 736 TRSGKIMRRILR 747
T +GKI R LR
Sbjct: 495 TATGKIQRFKLR 506
|
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506 |
| >gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like | Back alignment and domain information |
|---|
Score = 249 bits (637), Expect = 1e-73
Identities = 176/553 (31%), Positives = 250/553 (45%), Gaps = 40/553 (7%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N Y+ +D DK+A+ W +D G + T+ L + AN+ K +G+ KGD
Sbjct: 17 NFAYDVVDA-YADEEPDKLALIW-CDDDGEEKIFTFGDLKDYSNKAANFFKALGIGKGDT 74
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI--MDCKPKVVITSNAVKRG 317
V++ L E +MLA +IGA+ ++ + RI K V I + V
Sbjct: 75 VMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVP-- 132
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPT 377
+ +D A EC + V V W D ++ P +
Sbjct: 133 -------EHIDEAAPECGSPTLLVLV---------GDPVPEGWIDFDKEI-ENASPDFER 175
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437
+ +D L + +TSG+TG PK V H + H T KY + K ++ AD
Sbjct: 176 PTGNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA-KYWQNVKEGGLHLTVAD 234
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
GW YG + GA+V V++ P + + ++KY VT F PT+ R L++
Sbjct: 235 TGWGKAVWGKLYGQWIAGAAVFVYDYDKFDPKN--LLEKIEKYGVTTFCAPPTIYRFLIK 292
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
E +++Y SLR + GEP+NP + F G + + + QTET I
Sbjct: 293 ---EDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKTGIK---LMEGFGQTETT-LTIATF 345
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS--WP-GAFRTLYGDHER 614
P P KPGS P G I+D G E G + I++S P G F Y D ER
Sbjct: 346 PWMEP-KPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVIRTSDGKPLGLFMGYYRDPER 404
Query: 615 YETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674
+ GYY TGD D+DGY W GR DD+I SG+RIG EVESAL+ HP
Sbjct: 405 TAEVWHD---GYYHTGDTAWMDEDGYLWFVGRADDLIKSSGYRIGPFEVESALIQHPAVL 461
Query: 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 734
E AV GV ++GQ + A + L +G SEEL+K L V+K + P I + LP
Sbjct: 462 ECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELP 521
Query: 735 KTRSGKIMRRILR 747
KT SGKI R +R
Sbjct: 522 KTISGKIRRVEIR 534
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 7e-70
Identities = 127/365 (34%), Positives = 183/365 (50%), Gaps = 14/365 (3%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTADCGWITG 443
++DP L+YTSG+TG PKG LH + H + F+ +P DV+W AD WI G
Sbjct: 87 SDDPAILIYTSGTTGPPKGALHGHRVLLGHLPG-VELYFELAPRPGDVFWTPADWAWIGG 145
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
V + G VV + D R++ ++ +Y VT + PT ++ + R G+E
Sbjct: 146 LLDVLLPALYFGVPVVAYR--MQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSE-R 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQ 563
RY + LR + S GE + W + +G +++ + QTE ++ P
Sbjct: 203 ARYDLR-LRAVASGGESLGEELLEWARDELGL---TVNEFYGQTEANL-VVGNCAALGPA 257
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623
+PGS P G + +VD+ G + G + +K P F Y ++ E T K
Sbjct: 258 RPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLG-YWNNP--EATAAKFA 314
Query: 624 PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEH 683
+ TGD RD DGY W GR DDVI SG+RIG AE+E L+ HP EAAVVGV
Sbjct: 315 GDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPD 374
Query: 684 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743
+G+ + AFV L EGV S+EL L V+ ++ A P +I + LP T +GKI R
Sbjct: 375 PERGEIVKAFVVLAEGVEPSDELATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRR 434
Query: 744 RILRK 748
R LR+
Sbjct: 435 RELRR 439
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 4e-65
Identities = 133/374 (35%), Positives = 183/374 (48%), Gaps = 30/374 (8%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
A+DP+ L +TSG+TG PK VLHT Y V +T Y +P D++ + GW H
Sbjct: 82 RADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTM-YWIGLQPGDIHLNISSPGW-AKH 139
Query: 445 SYVT-YGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
++ + + P GA+V YP D+ R ++K+ VT F PT+ R ++ +
Sbjct: 140 AWSSFFAPWNAGATVFGIN----YPRFDARRYLGALEKFGVTTFCAPPTVWRMFIQ---Q 192
Query: 502 YVTRYSRKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
+ +Y LR S GEP+NP + + + I D + QTET MI P
Sbjct: 193 DLAQY-DVRLREAVSAGEPLNPEVIERVKKAWGLT------IRDGYGQTETTA-MIGNSP 244
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK-SSWP-GAFRTLYGDHERYE 616
G KPGS P G + V++D++G EI G + + P G GD E+
Sbjct: 245 GQ-KVKPGSMGRPLPGYRVVLLDDEGKEIPVT-EGEIALDLGDRPIGLMLGYMGDPEK-- 300
Query: 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676
T GYY TGD RD+DGY W GR DDV S +RI EVESAL+ HP AEA
Sbjct: 301 -TAAAFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEA 359
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
AVV ++ A++ L G S EL L VR+++ + +I + LPKT
Sbjct: 360 AVVPSPDPIRLAVPKAYIVLKPGYEPSRELALELFAHVRERLAPYKRIRRIEFVGELPKT 419
Query: 737 RSGKIMRRILRKIA 750
SGKI R LRKI
Sbjct: 420 ISGKIRRVELRKIE 433
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 1e-63
Identities = 151/567 (26%), Positives = 236/567 (41%), Gaps = 106/567 (18%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL---PMLMELP 271
DK A+Y++ TY++L ++V +LAN L+ +GVKKGD V ++ +E
Sbjct: 20 PDKEAVYFD------GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLE-- 71
Query: 272 IAMLACARIGAV-HSV-VFAGFSSDSLAQRIMDCKPKVVITSNAV-----KRGPKAIHLK 324
A A +IGAV H + + + +A + D + +VV+ + P+ ++
Sbjct: 72 -AYFAVPKIGAVLHPINIR--LKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVR 128
Query: 325 DIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
++ + + ++ +V YE A + + D +
Sbjct: 129 TVI--VEGDGPAAPLAPEV-GEYEELLAAASDTFDFPD---------------------I 164
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY-----------W 433
D D +LYTSG+TG PKGV+ + +H+ DVY W
Sbjct: 165 DENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAV-CAWLKLSRDDVYLVIVPMFHVHAW 223
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPT 490
G Y ++ GA V P D+++ +VT F+ PT
Sbjct: 224 -----GL-------PYLALMAGAKQV-------IPRRFDPENLLDLIETERVTFFFAVPT 264
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
+ + L++ Y +S SLR++ G + P+ R F G + + TET
Sbjct: 265 IWQMLLKAPRAYFVDFS--SLRLVIYGGAALPPALLREFKEKFG---IDLVQGYGMTETS 319
Query: 551 GFM-ITPL----PGAWPQKPGSATFPFFGVQPVIVDEKGVEIE--GECSGYLCIKSSWPG 603
+ + P PG W K SA P GV+ IVD+ G E+ G G + ++ W
Sbjct: 320 PVVSVLPPEDQLPGQWT-KRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPW-- 376
Query: 604 AFRTL--YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661
+ E T G+ TGD D+DGY ++T R+ DVI G I
Sbjct: 377 --LMQGYWNRPEATAETIDG---GWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPR 431
Query: 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-ELRKSLVLAVRKQIGA 720
E+E AL HP AE AV+GV E G+ A V L G ELR L R ++
Sbjct: 432 ELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFL----RGRLAK 487
Query: 721 FAAPDKIHWAPGLPKTRSGKIMRRILR 747
F P +I + LP+T GKI++R+LR
Sbjct: 488 FKLPKRIAFVDELPRTSVGKILKRVLR 514
|
Length = 521 |
| >gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 3e-61
Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 38/635 (5%)
Query: 145 YLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204
Y +++ SV++ FW + W + C+ +D R +WF G N N
Sbjct: 37 YDALHRWSVDELDTFWKAVWE---WFDVRFSTPCARVVDDRTM-PGAQWFPGARLNYAEN 92
Query: 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYL 264
L R + +Y ++ A +T+++L +QV LA L+ +GV+ GD V YL
Sbjct: 93 LL-RAAGT---EPALLY--VDETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYL 146
Query: 265 PMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLK 324
P + + +AMLA A +GA+ S F + + R +PK++ T + + K +
Sbjct: 147 PNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRR 206
Query: 325 DIVDAALDECAKSGISVDVCLTYENQS-AMTRENTKWQDGRDIWWQDVVPKYPT-KCEVE 382
D V E V + ++ A + + +D + E
Sbjct: 207 DKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGA-------LDLEDFTAAAQAAELVFE 259
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
+ + PL++L++SG+TG PK ++H+ GG +V D P D + GW+
Sbjct: 260 QLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMM 319
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ V+ + GA++V+++G+P +P + WDI ++ T+F T+ V + + G
Sbjct: 320 WNWLVS--GLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHP 377
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGF-MITPLPGAW 561
+ +L+ + S G P+ P +RW + +D W + +GG + + GA
Sbjct: 378 ARTHDLSALQCVASTGSPLPPDGFRWVY------DEIKADVWLASISGGTDICSCFAGAN 431
Query: 562 PQKP---GSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616
P P G P G D +G + GE G L + P + D + +Y
Sbjct: 432 PTLPVHIGEIQAPGLGTAVQSWDPEGKPVTGE-VGELVCTNPMPSMPIRFWNDPDGSKYR 490
Query: 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676
YF +PG + GD + G + GR D +N G R+G+AE+ +A+ + E+
Sbjct: 491 DAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRES 550
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
+G E G + FV L G + L + +R + PD+I PG+P T
Sbjct: 551 LCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHT 610
Query: 737 RSGKIMRRILRK-IASRQLDELGDTSTLADPGVVD 770
+GK + +++ + +D G + +P ++D
Sbjct: 611 LTGKRVEVAVKRVLQGTPVDNPG---AIDNPELLD 642
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway [Central intermediary metabolism, Other]. Length = 652 |
| >gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 211 bits (540), Expect = 5e-60
Identities = 158/540 (29%), Positives = 246/540 (45%), Gaps = 54/540 (10%)
Query: 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279
W N G + ++ +L + AN L G+++GD V + LP + E + +AC R
Sbjct: 30 LWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIR 89
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339
G V ++ + R+ K K ++TS+ + VD+ EC
Sbjct: 90 TGLVFIPGTIQLTAKDILYRLQASKAKCIVTSDELAPA---------VDSIASECPSLKT 140
Query: 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGST 399
+ V S +R+ W + +++++ + T+ +++P+ + +TSG+T
Sbjct: 141 KLLV-------SEHSRDG--WLN-----FKELLKEASTEHTCVKTKSQEPMAIYFTSGTT 186
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G PK H+ + +Y D PSD+ W +D GWI + + P + GA V
Sbjct: 187 GFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVF 246
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V P + KY +T F +APT+ R L++ + +T Y KSLR + GE
Sbjct: 247 VHHLPRFDPKV--ILQTLSKYPITTFCSAPTVYRMLVQ---QDLTSYKFKSLRHCVTGGE 301
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS--ATFPFFGVQP 577
P+NP + G + + + QTETG +I KPGS P + VQ
Sbjct: 302 PLNPEVLEQWKAQTG---LDLYEGYGQTETG--LICANFKGMKIKPGSMGKASPPYDVQ- 355
Query: 578 VIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFPGYYFTGDG 632
I+D+ G + EG+ + +K + P + Y + E+ T F Y TGD
Sbjct: 356 -IIDDNGNVLPPGTEGDIG--IRVKPTRPFCLFSCYVDNPEKTAATIRGDF---YITGDR 409
Query: 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692
D+DGY W GR DDVIN SG+RIG EVESAL+ HP E+AVV ++G+ + A
Sbjct: 410 GIMDEDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKA 469
Query: 693 FVTLVEGVPYS----EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
FV L + E+L K L V+ + P K+ + LPKT +GKI R LR
Sbjct: 470 FVVLAP--QFLSHDPEQLTKELQEHVKSVTAPYKYPRKVEFVQELPKTITGKIKRNELRD 527
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530 |
| >gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 1e-56
Identities = 110/364 (30%), Positives = 166/364 (45%), Gaps = 25/364 (6%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+DP +LYTSG+TG+PKGV+ T + + D P DVY A G +
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNA-LAGVDLSPGDVYLLAAPLYHAAGGLF 59
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
+ + G +VV+ D D++++++VT + PT+ + L+R + RY
Sbjct: 60 LLPA-LAAGGTVVLMPK----FDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPD--FARY 112
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG 566
SLR++ P+ R G + TETG P W +K G
Sbjct: 113 DLSSLRLIIYGAAPMPAELKRAMIEWFG---PVFVQGYGMTETGPTTTLLSPEDWLRKLG 169
Query: 567 SATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPF 623
S P GV+ IVDE G E+ GE G + ++ P G R E T +
Sbjct: 170 SVGRPVPGVEVRIVDEDGRELPPGEV-GEIVVRG--PAVMA---GYWNRPEATAEALRD- 222
Query: 624 PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEH 683
G+ TGD D+DGY ++ R D+I G I AEVE+ L++HP A+ AV+GV
Sbjct: 223 -GWLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLLAHPAVADVAVIGVPD 281
Query: 684 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743
E G+ + A V L G E L+ R+++ + P + + LP+ SGKI++
Sbjct: 282 EEWGEAVVAVVVLRPGATLDAE---ELIAFCRERLAGYKVPKSVEFVDELPRNASGKILK 338
Query: 744 RILR 747
R LR
Sbjct: 339 RELR 342
|
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 2e-55
Identities = 114/370 (30%), Positives = 173/370 (46%), Gaps = 29/370 (7%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC--GWI 441
+A+D + LYTSG+TGKPKGV+H + A F + +P D + ++ +
Sbjct: 89 EADDIAYWLYTSGTTGKPKGVMHRHRD-PLTFAEAFARELLGLQPGDRIFSSSKLFFAYG 147
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
G+S P+ +GAS V+ P +P D++ +++ T+ + P L R+L+ G
Sbjct: 148 LGNSL--LFPLFSGASAVL---LPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA- 201
Query: 502 YVTRYSRKSLRVLGSVGEPINPSA----WRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ +S+R+ S GE + P+ W I D TE I+
Sbjct: 202 -GSAPLFRSVRLCVSAGEAL-PAGLAERWAEATG------IEILDGIGSTEVLHIFISNR 253
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617
PGA +PG+ P G + +VDE G E+ G L ++ P G E
Sbjct: 254 PGAA--RPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRG--PSLAP---GYWNLPEK 306
Query: 618 TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
T G+ TGD SRD DG++ GR DD+I VSG + EVE+AL HP AEAA
Sbjct: 307 TQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPLEVEAALGEHPAVAEAA 366
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
VV V E + AFV G + L + L +R+++ + P +I + LP+T
Sbjct: 367 VVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPYKCPRQIEFLDTLPRTA 426
Query: 738 SGKIMRRILR 747
+GK+ R LR
Sbjct: 427 TGKLQRFRLR 436
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 6e-53
Identities = 134/526 (25%), Positives = 221/526 (42%), Gaps = 63/526 (11%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
LT++ LL++ +LA L+ +G+K+GD V + P +E P L C G + S +
Sbjct: 10 ELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSAANPSY 69
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV-CLTYENQ 350
+ D LA ++ KPK++ D +D + + G V + L
Sbjct: 70 TPDELAHQLKISKPKLIFCD------------PDELDKVKEAAKELGPVVRIIVLDSAPD 117
Query: 351 SAMTREN-TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ E+ + + G + ++ +D LLY+SG+TG PKGV+ +
Sbjct: 118 GVLRIEDLLEPRLGAEDEFRPTPLI---------DGKDDTAALLYSSGTTGLPKGVMLSH 168
Query: 410 GGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG-HSYVTYGPMLNGASVVVFEGAPT 466
+ +DV G + + +L GA+V++
Sbjct: 169 KNIIANLSQVQDTLKGNPDSSNDVVLTFLPFYHAYGLTTTLAS--LLCGATVIIM----P 222
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAW 526
DS +++KYKVT + P + +L + V +Y SLRV+ S P++
Sbjct: 223 KFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPL--VDKYDLSSLRVIFSGAAPLSKELQ 280
Query: 527 RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586
I + TETG PG KPGS V+ IVDE G +
Sbjct: 281 EELRKRF--PNTTIKQGYGMTETGPATTLTPPGDE--KPGSVGRLVPNVEAKIVDEDGGK 336
Query: 587 I-----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYH 641
GE LC+K P + + E + T + G+ TGD D+DG
Sbjct: 337 SLGPNERGE----LCVKG--PQIMKGYLNNPEATKETIDE--DGWLHTGDIGYFDEDGNF 388
Query: 642 WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP 701
++ R ++I G+++ AE+E+ L+ HP+ A+AAV+G+ EV G+ A+V L G
Sbjct: 389 YIVDRKKELIKYKGYQVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSK 448
Query: 702 YSEELRKSLV---LAVRKQI--GAFAAPDKIHWAPGLPKTRSGKIM 742
+E+ K V +A KQ+ G + +PK+ SGKI+
Sbjct: 449 LTEQEVKDYVAKKVAKYKQLRGGVVFVDE-------IPKSPSGKIL 487
|
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487 |
| >gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-52
Identities = 103/368 (27%), Positives = 161/368 (43%), Gaps = 27/368 (7%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP + YTSG+TG+PKG + T +++ + D + G
Sbjct: 1 PDDPALIQYTSGTTGRPKGAMLTHRN-VLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLV 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ GA++V+ D G + ++++ ++T + PT+ +L+ + +
Sbjct: 60 LGVLASLTAGATLVL----MEKFDPGAALRLIERERITALHGVPTMFIALLEHPDF--DK 113
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP-QK 564
+ SLR S G P+ P R I+ + TET G +
Sbjct: 114 FDLSSLRTGISGGAPVPPELVRRIREEFPM--AEITTGYGMTETSGVGTQTSGDDPYEDR 171
Query: 565 PGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
PG+ P GV+ IVD G E+ GE +C++ + Y D E
Sbjct: 172 PGTVGRPLPGVEVKIVDPDGGEVPPGEVGE----ICVRG--YSVMKGYYNDPEATAEAID 225
Query: 621 KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680
G+ TGD D+DGY + GR+ D+I G I AE+E AL++HP AEAAVVG
Sbjct: 226 AD--GWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTHPAVAEAAVVG 283
Query: 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA-VRKQIGAFAAPDKIHWAPGLPKTRSG 739
V E G+ + AFV L G +EE ++A R ++ F P + + LP+T SG
Sbjct: 284 VPDERLGEVVAAFVVLKPGATLTEE----ELIAFCRGRLARFKVPRYVRFVDELPRTASG 339
Query: 740 KIMRRILR 747
KI + LR
Sbjct: 340 KIQKFKLR 347
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347 |
| >gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 186 bits (474), Expect = 6e-51
Identities = 145/575 (25%), Positives = 224/575 (38%), Gaps = 127/575 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + D + TY++L V ++A L D+G+KKGD V + L
Sbjct: 26 DKTALVFG------DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWL 79
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
ACAR GAVH V + + LA + + + A L +AAL
Sbjct: 80 ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPA---------LAPTAEAALALLP 130
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + L + W + P +VE + +D +LYT
Sbjct: 131 VDTLILSLVLGGREAPGGWLDFADWAEAGS----VAEP------DVE-LADDDLAQILYT 179
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKY-----AFDYKPSDV-------YWCTADCGWITG 443
SG+ PKG + T H A +Y A D D+ Y C
Sbjct: 180 SGTESLPKGAMLT------HRALIAEYVSCIVAGDMSADDIPLHALPLYHCAQ------- 226
Query: 444 HSYVTYGPMLN-GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
V GP L GA+ V+ + PD ++ ++T F+ PT+ SL+R +
Sbjct: 227 -LDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD-- 279
Query: 503 VTRYSRKSLR------------VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
SLR VL + E + P F+N G QTE
Sbjct: 280 FDTRDLSSLRKGYYGASIMPVEVLKELRERL-PGLR--FYNCYG-----------QTE-- 323
Query: 551 GFMITPL-----PGAWPQKPGSATFPFFGVQPVIVDEKGVEI-EGE-----------CSG 593
I PL P ++PGSA P V+ +VD+ G ++ GE G
Sbjct: 324 ---IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLG 380
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 653
Y + D E+ F+ G++ +GD D++GY + R D+I
Sbjct: 381 Y--------------WDDPEKTAEA-FRG--GWFHSGDLGVMDEEGYITVVDRKKDMIKT 423
Query: 654 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA 713
G + + EVE AL +HP AE AV+G+ + + A V G +E+ L+
Sbjct: 424 GGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTED---ELIAH 480
Query: 714 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
R ++ F P ++ + LP+ SGKI++R LR+
Sbjct: 481 CRARLAGFKVPKRVIFVDELPRNPSGKILKRELRE 515
|
Length = 523 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 5e-50
Identities = 115/368 (31%), Positives = 164/368 (44%), Gaps = 36/368 (9%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447
D +LYTSG+TG PKGVL T ++ A +P DV I +Y
Sbjct: 82 DTAAILYTSGTTGPPKGVL-LTHAQLLFAARLAARLLGLRPDDVLLTPLPLFHINAQAYS 140
Query: 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---DGNEYVT 504
Y +L GA++V+ P + + R WD V K+ T+F + LM+ ++
Sbjct: 141 VYAALLVGATLVL---LPRF-SASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDD--- 193
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
LR + P+ + W F F V + + + TETG +I P
Sbjct: 194 --RDHPLRFVFGA--PLPAAIWPAFEERFGV------KLVEGYGMTETGVPIIAPGD--- 240
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY-GDHERYETTYF 620
P PGS P GV+ IVDE G E+ G L ++ P A Y G E T
Sbjct: 241 PAPPGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPE--ATA-- 296
Query: 621 KPFP-GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
K + G++ TGD RD+DG+ + R D I G I + EVE+A+++HP AEAAVV
Sbjct: 297 KAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAAILAHPAVAEAAVV 356
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
V E+ + A V L G E +L+ R ++ F P I + LPKT +
Sbjct: 357 AVPSELGEDEVKAVVVLRPGETLDPE---ALLEFCRDRLPYFMVPRYIEFVDELPKTPTE 413
Query: 740 KIMRRILR 747
KI + LR
Sbjct: 414 KIQKAELR 421
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis | Back alignment and domain information |
|---|
Score = 176 bits (449), Expect = 3e-49
Identities = 112/367 (30%), Positives = 165/367 (44%), Gaps = 26/367 (7%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+DP +L+TSG+TG+PKGV T ++ +A + PSD I G
Sbjct: 1 PDDPALILHTSGTTGRPKGVPLTHKN-LLASARNIAKSHKLTPSDRCLNVMPLFHIHGLI 59
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+L G SVV P + + WD + KY+VT + PT+ + L++
Sbjct: 60 VSLLATLLAGGSVVC----PPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP-NPG 114
Query: 506 YSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGFM-ITPLPGAW 561
LR + S P+ P+ F V P+ + + TE + PLP
Sbjct: 115 KPPPRLRFIRSASAPLPPAVLDRLEKRFGV------PVLEAYGMTEAAHQIASNPLPPL- 167
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
+KPGS P GV+ I+D+ G + G + I+ P + E
Sbjct: 168 VRKPGSVGRPA-GVEVAILDDDGRPLPPGQEGEIVIRG--PNVTAGYLNNPE--ANREAF 222
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
G++ TGD D+DGY +LTGR+ ++IN G +I EVE L+ HP AEA V GV
Sbjct: 223 RD-GWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLRHPAVAEAVVFGV 281
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
E+ G+ + A V L S+ + L RK++ AF P KI + LPK +GKI
Sbjct: 282 PDELYGEEVAAAVVLRAD---SKVTIEELRDFARKRLAAFKVPKKILFVDALPKGATGKI 338
Query: 742 MRRILRK 748
RR L +
Sbjct: 339 QRRKLAE 345
|
FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345 |
| >gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 1e-48
Identities = 157/553 (28%), Positives = 240/553 (43%), Gaps = 65/553 (11%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
LDRN+ G G K A D ++L+Y +L QV +L L+ +GVK+ + V++ +
Sbjct: 10 LDRNVVEGRGGKTAF----IDDI--SSLSYGELEAQVRRLGAALRRLGVKREERVLLLML 63
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI---- 321
++ PIA L R G V + ++D A + D + +VV S + KA
Sbjct: 64 DGVDFPIAFLGAIRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKS 123
Query: 322 -HLKDIVDAALDECAKSGISVDVCLTYEN-QSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
HL+ V E + ++ + E + A T+
Sbjct: 124 PHLEHRVVVGRPEAGEVQLAELLATESEQFKPAATQ------------------------ 159
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADC 438
A+DP F LY+SGSTG PKGV+HT TA + + + DV + A
Sbjct: 160 ------ADDPAFWLYSSGSTGMPKGVVHTHSN-PYWTAELYARNTLGIREDDVVFSAAKL 212
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G PM GA+ V+ PT PD +D + +++ TIFY PTL +++ D
Sbjct: 213 FFAYGLGNALTFPMSVGATTVLMGERPT-PD--AVFDRLRRHQPTIFYGVPTLYAAMLAD 269
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSA---WRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
N + LR+ S GE + W+ F V I D TE ++
Sbjct: 270 PNLPAED--QVRLRLCTSAGEALPAEVGQRWQARFGV------DIVDGIGSTEMLHIFLS 321
Query: 556 PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERY 615
LPG + G++ P G + +V + G ++ G L I S P + + + +
Sbjct: 322 NLPGD--VRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLI--SGPSSATMYWNNRAKT 377
Query: 616 ETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
T+ + +GD R+ DG + GR DD++ VSG + E+ESAL+ HP E
Sbjct: 378 RDTFQGEWTR---SGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLE 434
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735
AAVVGVE E AF+ L G L L V+ ++ + P I + LPK
Sbjct: 435 AAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPK 494
Query: 736 TRSGKIMRRILRK 748
T +GKI R LR+
Sbjct: 495 TATGKIQRFKLRE 507
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 7e-47
Identities = 111/394 (28%), Positives = 165/394 (41%), Gaps = 39/394 (9%)
Query: 365 DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424
I ++D + + +D L YT G+TG PKG + T +V
Sbjct: 103 AISFEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRN-LVANVQQIAAWV 161
Query: 425 DY--KPSDVYWCTADC-------GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ D + G + GA+ V+
Sbjct: 162 KDLREGEDRFLT---ALPLFHIFGLTVNMLL----GLRLGATNVLV----PNFRPINVLK 210
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ +Y+ TIF PTL +L+ + +Y SLR+ S G P+ F G
Sbjct: 211 EIKRYRFTIFPGVPTLYNALLN--HPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTG- 267
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGY 594
P+ + + TET + T P +KPGS P G + IVD++G E+ GE G
Sbjct: 268 --APLVEGYGLTETSP-VTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGE-VGE 323
Query: 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS 654
L ++ P + G R E T G+ TGD D+DGY ++ R D+I V
Sbjct: 324 LVVRG--PQVMK---GYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVG 378
Query: 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-ELRKSLVLA 713
G + E+E L SHP EAAVVGV +G+ + AFV L EG +E EL
Sbjct: 379 GFNVYPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFC--- 435
Query: 714 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
R+++ A+ P ++ + LPK+ GKI+RR LR
Sbjct: 436 -RERLAAYKVPRQVEFRDELPKSAVGKILRRELR 468
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL) | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-46
Identities = 138/537 (25%), Positives = 227/537 (42%), Gaps = 56/537 (10%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD+ A+ D LTY++L + V +LA L G +KGD V++ P +E P+
Sbjct: 19 GDRPALI----DAATGRALTYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVF 74
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA GAV + ++ +A+++ D K+ IT++ + + + AL+
Sbjct: 75 LAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSEL--------AEKLASLALEP- 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + + ++ SA + + V + +D L Y
Sbjct: 126 ------VVLLDSADDGSAAIDDLLFAD--------------EPEPPVVVIKQDDVAALPY 165
Query: 395 TSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
+SG+TG+ KGV+ T + + A ++ DV C I G + + +
Sbjct: 166 SSGTTGRSKGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLR 225
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
GA+VVV P + D + ++KYKVT P +V +L++ + V +Y SL+
Sbjct: 226 LGATVVVM---PRF-DLEKFLAAIEKYKVTHLPVVPPIVLALVK--HPIVDKYDLSSLKQ 279
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+GS P+ F + + TE+ KPGS
Sbjct: 280 IGSGAAPLGKELAEAFRARFPG--VELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVP 337
Query: 574 GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
V+ IVD E G + G L ++ P + + E T K G+ TGD
Sbjct: 338 NVEAKIVDPETGESLPPNQPGELWVRG--PQVMKGYLNNPEATAETIDKD--GWLHTGDL 393
Query: 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692
D+DGY ++ R+ ++I G ++ AE+E+ L+SHP+ A+AAV+ E G+ A
Sbjct: 394 GYFDEDGYLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMA 453
Query: 693 FVTLVEGVPYSEELRKSLV---LAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
FV G SE+ V +A K++ D I PK+ SGKI+RR L
Sbjct: 454 FVVRQPGSELSEDEVMQFVAKQVAPYKKVRKVVFVDAI------PKSPSGKILRREL 504
|
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 6e-42
Identities = 110/369 (29%), Positives = 172/369 (46%), Gaps = 20/369 (5%)
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438
C+ A+D + +TSG+TG PKG +H + ++ P DV+ +
Sbjct: 139 CDKRLTAADDVALIGFTSGTTGLPKGTMHFHRDILAICDAFPRHVLQPTPDDVFIGSPPL 198
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G + P+ GAS V+ E A P + +++ TI +TAPT R+++
Sbjct: 199 AFTFGLGGLVLFPLRFGASAVLLEQAT--PP--LLLKAIQEHRATILFTAPTAYRAML-- 252
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP 558
V + SLR S GE + W+ ++ G I D TE I+
Sbjct: 253 --IKVKAFDISSLRKCVSAGETLPAKVWQDWYERTG---LKIIDGIGATEMLHIFISA-- 305
Query: 559 GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
KPG+ P G + IVD++G E+ +G L ++ P R L + ++
Sbjct: 306 NEENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLAVRG--PTGCRYLDDERQQEYVR 363
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
G+ TGD +D+DGY R DD+I +G+ I EVE AL++HP AE AV
Sbjct: 364 -----DGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAV 418
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
+GV E +GQ + A + L +G +E L + L V+ I + P +I++ LPKT++
Sbjct: 419 IGVPDEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQT 478
Query: 739 GKIMRRILR 747
GKI R LR
Sbjct: 479 GKIQRFRLR 487
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 8e-42
Identities = 98/369 (26%), Positives = 151/369 (40%), Gaps = 29/369 (7%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ D + G+TG PK + T Y+ + + P VY H
Sbjct: 137 ELPDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC-GLDPGTVYLAVLP----AAH 191
Query: 445 SYVTYGP-----MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
++ P +L G +VV+ P ++ ++++ KVT P L+ +
Sbjct: 192 NFTLSSPGLLGALLAGGTVVL---HHP-PSPDVAFPLIEREKVTHTALVPALLNLWL--E 245
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
+ SLRV+ G P++P R +G CP+ + E G T L
Sbjct: 246 AAEWDQADLSSLRVIQVGGAPLSPELARRVEERLG---CPLQQVFGMAE-GLVNYTRLDD 301
Query: 560 AWPQKPGSATFPFFGVQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + IVD++G + G L + P R Y +
Sbjct: 302 PPDVIMRTQGRPISPADEIRIVDDQGEPVPPGEVGELLTRG--PYTIRGYYR-APEHNAR 358
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
F G+Y TGD D DGY+ + GR+ D IN G +I E+E+ L+SHP A+AAV
Sbjct: 359 AFTD-DGFYRTGDLVRIDADGYYRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAV 417
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
VG+ EV G+ I AFV G + ELR L + + F PD++ LP T
Sbjct: 418 VGMPDEVLGERICAFVVPRGGAAPTLAELRAFL---REQGLAKFKLPDRLEVVDSLPLTP 474
Query: 738 SGKIMRRIL 746
GK+ ++ L
Sbjct: 475 VGKVDKKAL 483
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|215552 PLN03051, PLN03051, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-40
Identities = 134/511 (26%), Positives = 211/511 (41%), Gaps = 52/511 (10%)
Query: 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+PM ++ I LA G V V FS+ +A R+ K V T + V RG +A+ L
Sbjct: 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL 60
Query: 324 KD-IVDAALDECA---KSGISVDVCLTYENQSAMTRENTKWQD--GRDIWWQDVVPKYPT 377
+V+AA + +G V V L ++ S W D G V +
Sbjct: 61 YSKVVEAAPAKAIVLPAAGEPVAVPLREQDLS--------WCDFLGVAAAQGSVGGNEYS 112
Query: 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGV--LHTTGGYMVHTATTFKYAFDYKPSDVYWCT 435
+ E +L++SG+TG+PK + H + + A+ D +P DV
Sbjct: 113 P---VYAPVESVTNILFSSGTTGEPKAIPWTHLSP---LRCASDGWAHMDIQPGDVVCWP 166
Query: 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ GW+ G ++ Y LNGA++ ++ GAP G V VT+ P++V++
Sbjct: 167 TNLGWMMG-PWLLYSAFLNGATLALYGGAPLGRGFG---KFVQDAGVTVLGLVPSIVKAW 222
Query: 496 MRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI- 554
G + LRV S GE W +V G + P+ + TE I
Sbjct: 223 RHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGYYK-PVIEYCGGTELASGYIS 281
Query: 555 -TPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAF-RTLYG 610
T L PQ PG+ + G + V++++ GV + C G + + GA R L
Sbjct: 282 STLLQ---PQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNA 338
Query: 611 DHERYETTYFKPFPGYYFT-------GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663
DH++ Y+K P Y GD R GY + GR DD +N+ G + + E+
Sbjct: 339 DHDK---VYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEI 395
Query: 664 ESALVSHPQC-AEAAVVGVEHEVKGQG---IYAFVTLVEGVPYS---EELRKSLVLAVRK 716
E A AE A VGV G I+ + + E L+K A++
Sbjct: 396 ERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQT 455
Query: 717 QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ ++ P LP+ S K++RR+LR
Sbjct: 456 NLNPLFKVSRVKIVPELPRNASNKLLRRVLR 486
|
Length = 499 |
| >gnl|CDD|215553 PLN03052, PLN03052, acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 3e-40
Identities = 175/663 (26%), Positives = 274/663 (41%), Gaps = 104/663 (15%)
Query: 147 EMYKRSVEDPAGFWADIASEFYWKEKWG----------QRVCSENLDVRKGNVKIEWFKG 196
E + SVE+P E YW + + + + G W G
Sbjct: 124 EFQRFSVENP---------EVYWSIVLDELSLVFSVPPRCILDTSDESNPGGQ---WLPG 171
Query: 197 GITNICYNCLDRNIEAGLGDKVAIYW--EANDPGVDATLTYSQLLQQVCQLANYLKDIGV 254
+ N+ CL D +AI W E +D +T S+L QV ++AN L +G
Sbjct: 172 AVLNVAECCLTPKPSKTD-DSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGF 230
Query: 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV 314
+KGDA+ I +PM + I LA G V + F+ +A R+ K K + T + +
Sbjct: 231 EKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVI 290
Query: 315 KRGPKAIHL-KDIVDAALDEC---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQD 370
RG K+I L +V+A + G SV V L RE D+ W D
Sbjct: 291 VRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKL---------REG-------DMSWDD 334
Query: 371 VVPKY-PTKCEVEWVDAEDPL----FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423
+ + + E+ E P+ +L++SG+TG+PK + T T + A
Sbjct: 335 FLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWT-------QLTPLRAAAD 387
Query: 424 ----FDYKPSDVY-WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD 478
D + D+ W T + GW+ G ++ Y +LNGA++ ++ G+P + V
Sbjct: 388 AWAHLDIRKGDIVCWPT-NLGWMMGP-WLVYASLLNGATLALYNGSPLGRGFAK---FVQ 442
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538
KVT+ T P++V++ + S+R GS GE + + W SR
Sbjct: 443 DAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLM-----SRA 495
Query: 539 ---PISDTWWQTETGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKGVEI--EGEC 591
PI + TE GG +T G+ Q A F P G + I+D+ G + C
Sbjct: 496 GYKPIIEYCGGTELGGGFVT---GSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPC 552
Query: 592 SGYLCIKSSWPGAFRTLY-GDHERYETTYFKPFPGYYFT-----GDGCSRDKDGYHWLTG 645
+G L + GA TL DH + YFK P + GD R GY+ G
Sbjct: 553 TGELALFPLMFGASSTLLNADHYK---VYFKGMPVFNGKILRRHGDIFERTSGGYYRAHG 609
Query: 646 RVDDVINVSGHRIGTAEVESAL-VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS- 703
R DD +N+ G ++ + E+E + E A +GV G +++ P S
Sbjct: 610 RADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN 669
Query: 704 ---EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDT 760
EL+K A++K++ + P P+T S K+MRR+LR+ QL +
Sbjct: 670 PDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQ----QLAQELSR 725
Query: 761 STL 763
S L
Sbjct: 726 SKL 728
|
Length = 728 |
| >gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 1e-39
Identities = 110/476 (23%), Positives = 176/476 (36%), Gaps = 98/476 (20%)
Query: 234 TYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY +L ++ +LA +L+ GV GD V + L EL +A+LA + GA + + +
Sbjct: 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
++ LA + D ++++T +A+ + L I +D
Sbjct: 61 AERLAFILEDAGARLLLTDSAL-------------ASRLAGLVLPVILLDPLEL------ 101
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
P P +D +++YTSGSTG+PKGV+ T
Sbjct: 102 ------------AALDDAPAPPPPD----APSGPDDLAYVIYTSGSTGRPKGVVVTHRS- 144
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGAP 465
+V+ + P D + S +G +L GA++VV
Sbjct: 145 LVNLLAWLARRYGLDPDDR--------VLQFASLSFDASVEEIFGALLAGATLVVPPEDE 196
Query: 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525
D+ ++ ++ VT+ P+L+ L + SLR++ GE + P+
Sbjct: 197 ERDDAALLAALIAEHPVTVLNLTPSLLALLAAALPP-----ALASLRLVILGGEALTPAL 251
Query: 526 ---WRWFFNVVGDSRCPISDTWWQ----TE-TGGFMITPLPGAWPQKPGSATF--PFFGV 575
WR +R TE T T + + P
Sbjct: 252 VDRWRA---RGPGAR------LINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANT 302
Query: 576 QPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT--YFKPFPGY--- 626
+ ++D+ V + GE L I PG R G R E T F P P
Sbjct: 303 RLYVLDDDLRPVPVGVVGE----LYI--GGPGVAR---GYLNRPELTAERFVPDPFAGGD 353
Query: 627 ----YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
Y TGD DG GR+DD + + G+RI E+E+AL+ HP EA V
Sbjct: 354 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 409
|
This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409 |
| >gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 5e-39
Identities = 101/380 (26%), Positives = 154/380 (40%), Gaps = 50/380 (13%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW-- 440
+D ++YTSGSTG+PKGV+ + + +Y + D D G
Sbjct: 2 DDLAAIIYTSGSTGEPKGVMLSHRNLTAGARSIAQY-LELTEDDRILAVLPFSFDYGLSQ 60
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD---KYKVTIFYTAPTLVRSLMR 497
+ V G ++V+ E +P D++ K ++T F PT L+R
Sbjct: 61 LLTAFRV-------GGTLVL-ESRFAFP-----RDVLKHLAKERITGFAGVPTTWAQLLR 107
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL 557
+ SLR L + G + D++ + + TE F T L
Sbjct: 108 LDPLAREDFP--SLRYLTNAGGALPAKTILQLRRAFPDAK--LFSMYGLTEA--FRSTYL 161
Query: 558 PGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL--YGD 611
P P ++P S V+ +VDE G G L + GA + D
Sbjct: 162 P---PEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHR----GANVMKGYWND 214
Query: 612 HERYETTYFKPFP----GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL 667
E +P P +TGD D++GY + GR DD+I G+R+ E+E +
Sbjct: 215 PEATAER-LRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPTEIEEVI 273
Query: 668 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKI 727
+HP AEAAV+GV + GQ I A V +G K L+ RK + + P +I
Sbjct: 274 CAHPLVAEAAVIGVPDPLLGQAIVAVVVSADG---ESLDEKELLKHCRKHLPNYMVPAEI 330
Query: 728 HWAPGLPKTRSGKIMRRILR 747
+ LPK +GK+ R LR
Sbjct: 331 VFVDSLPKNANGKVDRSALR 350
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350 |
| >gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 6e-39
Identities = 135/557 (24%), Positives = 220/557 (39%), Gaps = 84/557 (15%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
GDK A + D LTY++L +V + A L +G+ KGD V I+ P IA
Sbjct: 18 FGDKEAYVFG------DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIA 71
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN----AVKRGPKAI-HLKDIVD 328
L + GAV + +++D A + K + + L+ +V
Sbjct: 72 ALGALKAGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVV- 130
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV-PKYPTKCEVEWVDAE 387
+C T E+ + T + D + P + E VD +
Sbjct: 131 --------------ICETEEDDPHTEKMKT---------FTDFLAAGDPAERAPE-VDPD 166
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC----------TAD 437
D +L+TSG+TG+PKG + T + + A +Y D Y A
Sbjct: 167 DVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKA- 224
Query: 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
G P++ GA+++ P + D + +++ ++T+ PT+ SL++
Sbjct: 225 -GVNA--------PLMRGATILP---LPVF-DPDEVFRLIETERITVLPGPPTMYNSLLQ 271
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQTETGGF 552
D + SLR+ + + + F V + + +E G
Sbjct: 272 HPDRSAE----DLSSLRLAVTGAASMPVALLERFESELGVD-----IVLTGYGLSEASGV 322
Query: 553 M-ITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
L G+ GV+ IV+E G E+ G L ++ P + Y D
Sbjct: 323 TTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRG--PNVMKGYYDD 380
Query: 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671
E T G+ TGD D++GY ++ R D+ V G + AEVE L HP
Sbjct: 381 PE--ATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHP 438
Query: 672 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731
AEAAV+GV E G+ A+V L G +EE L+ R+ + + P I +
Sbjct: 439 AVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEE---ELIAYCREHLAKYKVPRSIEFLD 495
Query: 732 GLPKTRSGKIMRRILRK 748
LPK +GK+++R LR+
Sbjct: 496 ELPKNATGKVLKRALRE 512
|
Length = 513 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 7e-39
Identities = 103/366 (28%), Positives = 154/366 (42%), Gaps = 35/366 (9%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-----FDYKPSDVYWCTADCGWITGHSY 446
LLYTSG+TG+PKGV+HT H + P DV + ITG Y
Sbjct: 98 LLYTSGTTGEPKGVMHT------HNTLLAEVRSYVERLGLTPDDVVLMPSPLAHITGFLY 151
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
P+L GA+VV+ + + D R+ +++ ++ VT A + L+ +
Sbjct: 152 GLELPLLLGATVVLQD---RW-DPARALELIREHGVTFTMGATPFLADLLAAADA--AGP 205
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT-PLPGAWPQK- 564
SLRV G P+ R +G + TE ++T P K
Sbjct: 206 DLPSLRVFLCGGAPVPRELARRAAEALGAKVVRA---YGMTEVP--LVTVGTPDDPDDKR 260
Query: 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+ P GV+ IVD+ G ++ G L ++ P F + E
Sbjct: 261 AATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRG--PQLFLGYLDPPDNTEAFTDD--- 315
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G++ TGD D DGY +TGR D+I G I E+E L+ HP AE AVV + E
Sbjct: 316 GWFRTGDLGRLDADGYLRITGRKKDIIIRGGENISAREIEDLLLRHPAVAEVAVVAMPDE 375
Query: 685 VKGQGIYAFVTLVEGVPYS-EELRKSLVLA-VRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
G+ + A V G + EL + L + KQ P+++ LP+T SGK+
Sbjct: 376 RLGERVCAVVVPAPGASLTLAELTEHLAAQGLAKQK----WPERLEVVDALPRTPSGKVQ 431
Query: 743 RRILRK 748
+ LR+
Sbjct: 432 KFELRE 437
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 8e-39
Identities = 101/384 (26%), Positives = 159/384 (41%), Gaps = 61/384 (15%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D + YTSG+TG PKG +HT ++ TA P V + G
Sbjct: 84 DDVAVIPYTSGTTGLPKGCMHTHRT-VLATAAASAAWSGLTPDSVLLAFLPLFHVAGMQG 142
Query: 447 VTYGPMLNGASVVVFEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDGN 500
P+ GA++V+ R WD +++Y+VT + T+V L+
Sbjct: 143 SMNAPIYTGATLVLL---------TR-WDREAAARAIERYRVTHWTNIVTMVVDLLAHPR 192
Query: 501 EYVTRYSRKSLRVLGSVGEPINPS-AWRWF------FNVVGDSRCPISDTWWQTETGGFM 553
Y SL+V+G G + P+ A R + + + TET
Sbjct: 193 --FADYDLSSLKVVGGGGAALPPAVAERLKALTGLLYE----------EGYGLTET---- 236
Query: 554 ITPL---PGAWPQKPGSATFPFFGVQPVIVD-----EKGVEIEGECSGYLCIKSSWPGAF 605
T P P KP P FG ++D E EGE + ++ P F
Sbjct: 237 HTCTHFNPPDRP-KPQCLGIPVFGTDARVIDPETGEELPPGEEGE----IVVRG--PQVF 289
Query: 606 RTLYG-DHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664
+ + E+ ++ TGD D++GY + RV +INVSG+++ AEVE
Sbjct: 290 KGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVE 349
Query: 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFA 722
+ L HP E V+G +G+ + AFV L +EE ++ R+++ A+
Sbjct: 350 ALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEE---DIIEWCRERMAAYK 406
Query: 723 APDKIHWAPGLPKTRSGKIMRRIL 746
P I + LPKT SGK++ R+L
Sbjct: 407 YPRIIEFVDELPKTASGKVLWRLL 430
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 9e-39
Identities = 140/555 (25%), Positives = 216/555 (38%), Gaps = 67/555 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAM 274
DK AI + ++Y +LL++ +LA YL+ GV+KGD V++Y+ + IA
Sbjct: 25 DKTAIVF------YGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAY 78
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS----NAVKRGPKAIHLKDIVDA- 329
A R AV V + LA + D +V I V + L+ ++ A
Sbjct: 79 YAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQ 138
Query: 330 ---ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
L A+ I+V L E G + W++ +
Sbjct: 139 YSDYLP--AEPEIAVPAWLRAEPPLQALAP------GGVVAWKEALAAGLAPPPHT-AGP 189
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
+D L YTSG+TG PKG +HT M A + P V +TG +
Sbjct: 190 DDLAVLPYTSGTTGVPKGCMHTHRTVM-ANAVGSVLWSNSTPESVVLAVLPLFHVTGMVH 248
Query: 447 VTYGPMLNGASVVVF-----EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
P+ GA+VV+ E A ++++Y+VT + PT+V +
Sbjct: 249 SMNAPIYAGATVVLMPRWDREAAA---------RLIERYRVTHWTNIPTMVVDFLASPG- 298
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
+ SLR +G G + + + G + + TET + P
Sbjct: 299 -LAERDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQTHSNPPDR- 353
Query: 562 PQKPGSATFPFFGVQPVIVD-----EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
K P FGV ++D E GE I P F+ + E
Sbjct: 354 -PKLQCLGIPTFGVDARVIDPETLEELPPGEVGE------IVVHGPQVFKGYWNRPEATA 406
Query: 617 TTYFKPFPGYYF--TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674
F G F TGD D++GY ++T R+ +IN SG ++ AEVE+ L HP
Sbjct: 407 EA-FIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQ 465
Query: 675 EAAVVGVEHEVKGQGIYAFVTL---VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731
EA V+ +G+ + A V L G EE+ R+ + A+ P + +
Sbjct: 466 EACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIA----WAREHMAAYKYPRIVEFVD 521
Query: 732 GLPKTRSGKIMRRIL 746
LPK+ SGKI+ R L
Sbjct: 522 SLPKSGSGKILWRQL 536
|
Length = 546 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 4e-38
Identities = 103/385 (26%), Positives = 169/385 (43%), Gaps = 36/385 (9%)
Query: 373 PKYPTKCEVEWV--DAE-----DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425
P YP E+ ++ D++ DP ++YTSG+TG+PKGV+ T G + A A+
Sbjct: 68 PSYPAA-ELAYILSDSQPSLLVDPALIIYTSGTTGRPKGVVLTHGN-LAANARALVEAWR 125
Query: 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF 485
+ SDV + G + P+ GASV P + D + ++T+F
Sbjct: 126 WTASDVLLHALPLHHVHGLFNALHCPLWAGASVEFL---PRF-DPQERDALRLLPRITVF 181
Query: 486 YTAPTL-VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544
PT+ R L + + ++LR+ S + + G + + +
Sbjct: 182 MGVPTIYTRLLEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGH---TLLERY 238
Query: 545 WQTETGGFMIT--PLPGAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCIKSSW 601
TETG M PL G ++PG+ P GV+ IVDE G E + G + ++
Sbjct: 239 GMTETG--MALSNPLDG--ERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRG-- 292
Query: 602 PGAFRTLYGDHERYETTYFKPFP--GYYFTGDGCSRDKDGYHWLTGRV-DDVINVSGHRI 658
P F + E + F G++ TGD D+DGY+ + GR DD+I G+++
Sbjct: 293 PNVFSEYWNKPEATA----EAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKV 348
Query: 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 718
E+E AL+ HP AE AV+GV G+ + A V G + L R+++
Sbjct: 349 SALEIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAE---LRAWAREKL 405
Query: 719 GAFAAPDKIHWAPGLPKTRSGKIMR 743
+ P ++ LP+ GK+ +
Sbjct: 406 APYKIPKRVIVVDELPRNAMGKVQK 430
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 8e-38
Identities = 139/540 (25%), Positives = 215/540 (39%), Gaps = 67/540 (12%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D TLTY+ L ++V LA+ L+ +G+ +G+ V IYL +E AM A G V +
Sbjct: 23 DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAGGVFVPINP 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + DC ++++TS+ D++ AL C + V
Sbjct: 83 LLKAEQVAHILADCNVRLLVTSSE---------RLDLLHPALPGCHDLRTLIIV-----G 128
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL--H 407
A E W ++ +D D +LYTSGSTG+PKGV+ H
Sbjct: 129 DPAHASE--GHPGEEPASWPKLLALGDADPPHPVID-SDMAAILYTSGSTGRPKGVVLSH 185
Query: 408 TTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
+V A + + +P D + G + +T GA+VV+ + Y
Sbjct: 186 RN---LVAGAQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTA-FYVGATVVLHD----Y 237
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMR-DGNEYVTRYSRKSLRVLGSVG---EPINP 523
++K+ +T P L L + D E SLR L + G
Sbjct: 238 LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDWPESAAP----SLRYLTNSGGAMPRATL 293
Query: 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGS--ATFPFFGVQPVIV 580
S R F + + TE F T L P ++P S P V ++
Sbjct: 294 SRLRSFL-----PNARLFLMYGLTE--AFRSTYLPPEEVDRRPDSIGKAIPNAEVL--VL 344
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTL--YGDHERYETTYFKPFPGYY----------F 628
E G E G L + GA + + D E+ F+P P + +
Sbjct: 345 REDGSECAPGEEGELVHR----GALVAMGYWNDPEK-TAERFRPLPPFPGELHLPELAVW 399
Query: 629 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688
+GD RD++G+ + GR D++I SG+R+ EVE + AEA GV GQ
Sbjct: 400 SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQ 459
Query: 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
I VT G E R +L+ R ++ + P IH LP+ +GKI R+ L K
Sbjct: 460 AIVLVVTPPGGE---ELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAK 516
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517 |
| >gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-37
Identities = 151/552 (27%), Positives = 216/552 (39%), Gaps = 70/552 (12%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA-- 289
T TY++LL V + AN L +GV GD V LP L E A+ G +
Sbjct: 58 TWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWG----GEAAGIANPIN 113
Query: 290 -GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI---VDAALDECA--KSGISVDV 343
+ +A+ + KV++T + P DI V L ++ + VD+
Sbjct: 114 PLLEPEQIAELLRAAGAKVLVT---LGPFPGT----DIWQKVAEVLAALPELRTVVEVDL 166
Query: 344 --CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV--EWVDAEDPLFLLYTSGST 399
L + A+ K R + + + + P + +D +T G+T
Sbjct: 167 ARYLPGPKRLAVPLIRRK-AHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTT 225
Query: 400 GKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLNGASV 458
G PK HT G V A P D +C + VT P+ GA V
Sbjct: 226 GMPKLAQHTHGN-EVANAWLGALLLGLGPGDTVFCGLPLFHVNA-LLVTGLAPLARGAHV 283
Query: 459 VVFEGAPT---YPDSG---RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
V+ T Y G W IV++Y++ PT+ +L++ V + SLR
Sbjct: 284 VL----ATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQ---VPVDGHDISSLR 336
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKPGSA--T 569
P+ +R F G I + + TE T + P G ++ GS
Sbjct: 337 YALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPPDG--ERRIGSVGLR 391
Query: 570 FPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAFRT-LYGDHER---YETTYFK 621
P+ V+ VI+D+ G +C+ G LCI P F L H + E +
Sbjct: 392 LPYQRVRVVILDDAG-RYLRDCAVDEVGVLCIAG--PNVFSGYLEAAHNKGLWLEDGWLN 448
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
TGD D DGY WLTGR D+I GH I A +E AL+ HP A AA VG
Sbjct: 449 -------TGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGR 501
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTRSGK 740
G+ A+V L G +E L+ R I AA P + LPKT GK
Sbjct: 502 PDAHAGELPVAYVQLKPGASATEA---ELLAFARDHIAERAAVPKHVRILDALPKTAVGK 558
Query: 741 IMRRILRKIASR 752
I + LR+ A R
Sbjct: 559 IFKPALRRDAIR 570
|
Length = 632 |
| >gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C) | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 8e-37
Identities = 141/561 (25%), Positives = 218/561 (38%), Gaps = 118/561 (21%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D +LTY++L ++ +LA L+ GV GD V + L EL +A+L
Sbjct: 2 DAIALVYG------DRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRI--M--DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
A + GA + A+R+ M D +V++T ++ +A L ++
Sbjct: 56 AILKAGAA----YVPLDPAYPAERLAFMLEDSGARVLLTDESLAPLARADQLPLVILE-- 109
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
+E VDA+D +
Sbjct: 110 EELDAEDAGPPAPA--------------------------------------VDADDLAY 131
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW------ITGHS 445
++YTSGSTG+PKGV G +V Y P D + + + I
Sbjct: 132 VMYTSGSTGRPKGVAVPHRG-VVRLVRNTNYI-ALDPDDRFLQLSPLSFDASTFEI---- 185
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI-FYTAPTLVRSLMRDGNEYVT 504
+G +LNG +V+ + T D R ++ + VT+ + TA L L+ + E +
Sbjct: 186 ---WGALLNGGRLVLIDKE-TLLDPDRLARLIAEQGVTVLWLTAA-LFNQLVDEDPEAL- 239
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWF---------FNVVGDSRCPISDTWWQTETGGFMIT 555
LR L G+ ++P+ R N G P +T T + +IT
Sbjct: 240 ----AGLRQLLVGGDVLSPAHVRRVLAACPGLRLINGYG----PTENT---TFSTCHVIT 288
Query: 556 PLPGAWPQKP-GSATFPFFGVQPVIVDEKG--VEI--EGECSGYLCIKSSWPGAFRTLYG 610
L A P G P I+DE+G V I GE L + G
Sbjct: 289 RLDEAADSIPIG---RPIPNTTVYILDEEGQPVPIGVPGE----LYV--GGDGLALGYLN 339
Query: 611 DHERYETTYFK-PF-PG--YYFTGDGCSRDKDG-YHWLTGRVDDVINVSGHRIGTAEVES 665
E + PF PG Y TGD DG +L GR+D + + G RI E+E
Sbjct: 340 RPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFL-GRIDRQVKIRGFRIELGEIEQ 398
Query: 666 ALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD 725
AL+ HP EAAV+ E + + A+V + + ELR L +++ A+ P
Sbjct: 399 ALLQHPGVREAAVLVREDAAGDKRLVAYVVARGALD-AAELRAHL----AERLPAYMVPA 453
Query: 726 KIHWAPGLPKTRSGKIMRRIL 746
LP T +GK+ RR L
Sbjct: 454 AFVVLDELPLTANGKVDRRAL 474
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474 |
| >gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-35
Identities = 129/529 (24%), Positives = 213/529 (40%), Gaps = 51/529 (9%)
Query: 227 PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV 286
+TY +L ++ +LA+ + +G+K+GD V I++ + A R G ++
Sbjct: 19 ASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTC 78
Query: 287 VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346
V + + A + D + +ITS A K D+ A L +C V L
Sbjct: 79 VNSHLTPAEAAYIVDDSGARALITSAA-----KL----DVARALLKQCPG----VRHRLV 125
Query: 347 YENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
+ + + + + V P P E D +LY+SG+TG+PK
Sbjct: 126 LDGDGELEG----FVG-----YAEAVAGLPATPIADESLGTD------MLYSSGTTGRPK 170
Query: 404 GVLHTTGGYMVHTATT----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459
G+ T + + ++ VY A V L G +V+
Sbjct: 171 GIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRL-GGTVI 229
Query: 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519
V E + D+ + ++++Y VT PT+ +++ E +Y SL V
Sbjct: 230 VME----HFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAA 285
Query: 520 PINPSAWRWFFNVVGDSRCPISDTWW-QTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P P + G PI ++ TE GF W PG+ FG
Sbjct: 286 PCPPQVKEQMIDWWG----PIIHEYYAATEGLGFTACD-SEEWLAHPGTVGRAMFGD-LH 339
Query: 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD 638
I+D+ G E+ G + + P F L + E + P + GD D+D
Sbjct: 340 ILDDDGAELPPGEPGTIWFEGGRP--FEYLNDPAKTAEARH--PDGTWSTVGDIGYVDED 395
Query: 639 GYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698
GY +LT R +I G I E E+ L++HP+ A+AAV GV +E G+ + A V V+
Sbjct: 396 GYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVD 455
Query: 699 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
GV L L+ R+++ P I + LP+ +GK+ +R+LR
Sbjct: 456 GVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLR 504
|
Length = 511 |
| >gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 3e-34
Identities = 136/549 (24%), Positives = 208/549 (37%), Gaps = 97/549 (17%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+TY +L + +LA+ L+ +G+++GD V I L E A R G ++ +
Sbjct: 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A + D KV+I S A L D E V + L
Sbjct: 69 HLTAAEIAYIVDDSGAKVLIVSAA---------LADTAAELAAEL---PAGVPLLLVVAG 116
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVL--- 406
R + + P P E D +LY+SG+TG+PKG+
Sbjct: 117 PVPGFRSYEEALAAQ--------PDTPIADETAGAD------MLYSSGTTGRPKGIKRPL 162
Query: 407 -----HTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT-YGPMLN--GASV 458
G M + P VY A H+ +G G +V
Sbjct: 163 PGLDPDEAPGMM---LALLGFGMYGGPDSVYLSPAP----LYHTAPLRFGMSALALGGTV 215
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
VV E D+ + ++++Y+VT PT+ +++ E RY SLRV
Sbjct: 216 VVMEKF----DAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAA 271
Query: 519 EPINPSAWRWFFNVVGDSRCPIS------DTWW---------QTETGGF-MITPLPGAWP 562
P CP+ D WW +E GG +IT W
Sbjct: 272 AP-----------------CPVEVKRAMID-WWGPIIHEYYASSEGGGVTVITS--EDWL 311
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEI----EGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
PGS G I+DE G E+ G + G + D E+
Sbjct: 312 AHPGSVGKAVLGEVR-ILDEDGNELPPGEIGT------VYFEMDGYPFEYHNDPEKTAAA 364
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
G+ GD D+DGY +LT R D+I G I E+E+ LV+HP+ A+ AV
Sbjct: 365 RNPH--GWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAV 422
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
GV E G+ + A V +G + L L+ +R ++ + P I + LP+T +
Sbjct: 423 FGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPT 482
Query: 739 GKIMRRILR 747
GK+ +R LR
Sbjct: 483 GKLYKRRLR 491
|
Length = 502 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 93/387 (24%), Positives = 162/387 (41%), Gaps = 59/387 (15%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D +D +++YTSGSTG+PKGV+ G +V+ + + D A +
Sbjct: 90 TDPDDLAYVIYTSGSTGRPKGVMVEHRG-LVNLLAWLQERYGLTAGDRVLQFASFSFDAS 148
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ + P+L+GA++V+ D +++ ++++T+ + P+L+R+L+ + +
Sbjct: 149 V-WEIFPPLLSGATLVLAPPE-VLRDPEALAELLREHRITVLHLVPSLLRALL----DAL 202
Query: 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPISDTWWQTETGGFMI 554
+ SLR++ GE + R + + +R + T+ + +
Sbjct: 203 EPAALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDG 262
Query: 555 TPLP-GAWPQKPGSATFPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLY 609
+P G P + ++DE V + GE L I G R
Sbjct: 263 GSVPIGR----------PIANTRVYVLDEDLRPVPVGVPGE----LYI--GGAGVAR--- 303
Query: 610 GDHERYETTYFK----PFPG----YYFTGDGCSRDKDG---YHWLTGRVDDVINVSGHRI 658
G R E T + PF G Y TGD DG + GR DD + + G+RI
Sbjct: 304 GYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFL---GRADDQVKIRGYRI 360
Query: 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQ 717
E+E+AL++HP EA VV E + + A+V G + ELR L ++
Sbjct: 361 ELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAELRAFL----AER 416
Query: 718 IGAFAAPDKIHWAPGLPKTRSGKIMRR 744
+ + P LP T +GK+ R+
Sbjct: 417 LPDYMVPSAFVVLDALPLTPNGKVDRK 443
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-33
Identities = 112/421 (26%), Positives = 170/421 (40%), Gaps = 102/421 (24%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDY 426
E ++ E P + L YTSG+TG PKGV+++ ++HT A +
Sbjct: 145 ELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPD--SLGL 202
Query: 427 KPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
SD W + G V G L+ AS++ D
Sbjct: 203 SESDTVLPVVPMFHVNAWGLPYAATMVGAKLVLPGRYLDPASLL---------------D 247
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYV--TRYSRKSLRVLGSVGEPINPSAWRWFFNVV 533
++++ KVT+ PT+ L+ Y+ SLR + VV
Sbjct: 248 LIEEEKVTVSAGVPTIWLGLL----NYLEANGKDLSSLRRV-----------------VV 286
Query: 534 GDSRCPIS--DTWWQ-----------TETGGF-MITPLPGAWPQKPGSATF--------P 571
G S P S + + TET ++ L P P
Sbjct: 287 GGSALPRSLIEKLEERGVEVIHAWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRP 346
Query: 572 FFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF- 628
GV+ IVD++G E+ +G+ G L ++ W + Y D + +F
Sbjct: 347 VPGVELRIVDDEGNELPWDGKTVGELVVRGPW--VTGSYYKD----PEKTEELTRDGWFR 400
Query: 629 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688
TGD D+DGY +T R DVI G I + E+E+AL++HP AEAAVVGV HE G+
Sbjct: 401 TGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGE 460
Query: 689 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
A V L G + EEL + L K++ + PD++ + +PKT GK ++ LR
Sbjct: 461 RPLAVVVLKPGAKVTEEELLEHL----AKKVAKWWLPDRVVFVDEIPKTSVGKFDKKALR 516
Query: 748 K 748
+
Sbjct: 517 E 517
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-33
Identities = 131/550 (23%), Positives = 209/550 (38%), Gaps = 91/550 (16%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L Q+ +LA L+ +G+K GD V++ LP + E I A R+G V A S
Sbjct: 54 LSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRLGVAP--VLALPS 111
Query: 293 SDSLAQR--IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ + ++I + D E ++ +
Sbjct: 112 HRASELGAFASQIEAALLI-------VARQHSGFD-YRPFARELVAKHPTLRHVIVAG-- 161
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHT 408
+ + +P DA + F + G+TG PK + T
Sbjct: 162 -----------EAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRT 210
Query: 409 TGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP-----MLNGASVVVFE 462
Y A+ FD VY C H++ P L G +VV+
Sbjct: 211 HNDYYYSVRASAEICGFD--QQTVYLC----ALPAAHNFPLSSPGALGVFLAGGTVVL-- 262
Query: 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
AP P + +++++ VT+ P L SL E+ R SLR+L G ++
Sbjct: 263 -APD-PSPELCFPLIERHGVTVTALVPPLA-SLWLQAAEW-ERADLSSLRLLQVGGARLS 318
Query: 523 PSAWRWFFNVVGDSRCPISDTWWQTE-----------------TGGFMITPLPGAWPQKP 565
+ R V+G C + + E T G ++P
Sbjct: 319 ATLARRVPAVLG---CQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVR---- 371
Query: 566 GSATFPFFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+VD G + GE G L + P R Y + F
Sbjct: 372 -------------VVDADGNPVAPGE-VGELLTRG--PYTIRGYY-RAPEHNARAFDA-D 413
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G+Y +GD RD DGY + GRV D IN G +I EVE+ L+ HP +AA+V + E
Sbjct: 414 GFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDE 473
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744
+ G+ AF+ + E + +LR+ L + + AF PD+I + LP T GKI ++
Sbjct: 474 LLGEKSCAFIVVKEPPLRAAQLRRFL---RERGLAAFKLPDRIEFVDSLPLTAVGKIDKK 530
Query: 745 ILRKIASRQL 754
LR+ + +L
Sbjct: 531 ALRRRLASRL 540
|
Length = 542 |
| >gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 2e-32
Identities = 138/565 (24%), Positives = 208/565 (36%), Gaps = 90/565 (15%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269
+ + D+VA+ D LTY++L ++ +LA+YL G+ GD V IY +E
Sbjct: 12 VADAVPDRVALVCG------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIE 65
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI--------TSNAVKRGPKAI 321
AML + AV V + D L + D ++ + + R PK
Sbjct: 66 YVEAMLGAFKARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLR 125
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
L + D + ++ + + L + R D + P
Sbjct: 126 TLVVVEDGSGNDLLPGAVDYEDALA---AGSPER--------------DFGERSP----- 163
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG-YMVHTATTFKYAFDYKPSDVYWCTADCGW 440
D L+LLYT G+TG PKGV+ + V + D
Sbjct: 164 ------DDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEP-IEDEEELAKRAAA 216
Query: 441 ITGHSYVTYGPMLNGASV------------VVFEGAPTYPDSGRSWDIVDKYKVT-IFYT 487
G P+++GA VV + D+ W +++ KV I
Sbjct: 217 GPGMRRFPAPPLMHGAGQWAAFAALFSGQTVVLLPDVRF-DADEVWRTIEREKVNVITIV 275
Query: 488 ----APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCP 539
A L+ +L G Y SL + S G +PS A NVV
Sbjct: 276 GDAMARPLLDALEARG-----PYDLSSLFAIASGGALFSPSVKEALLELLPNVV------ 324
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCI 597
++D+ +ETG F + G F G + V++DE G VE G++
Sbjct: 325 LTDSIGSSETG-FGGSGTVAKGAVHTGGPRFTI-GPRTVVLDEDGNPVEPGSGEIGWIAR 382
Query: 598 KSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655
+ P + Y D E+ T F G Y GD + DG L GR IN G
Sbjct: 383 RGHIPLGY---YKDPEKTAET-FPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGG 438
Query: 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR 715
++ EVE AL +HP A+A VVGV E GQ + A V L EG L R
Sbjct: 439 EKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLA---ELRAHCR 495
Query: 716 KQIGAFAAPDKIHWAPGLPKTRSGK 740
+ + P I + + ++ +GK
Sbjct: 496 SSLAGYKVPRAIWFVDEVQRSPAGK 520
|
Length = 533 |
| >gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-32
Identities = 139/529 (26%), Positives = 212/529 (40%), Gaps = 74/529 (13%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TLT+ +L ++ LA L+ + + + V I A+LA RIGA ++ F
Sbjct: 68 TLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSF 127
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+ +LA+ + VI VD AL +C ++ V
Sbjct: 128 AGPALAEVVTREGVDTVIYDE---------EFSATVDRALADCPQATRIVA--------- 169
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT-TG 410
W D +V+ E + + LL TSG+TG PKG + G
Sbjct: 170 --------WTDEDHDLTVEVLIAAHAGQRPEPTGRKGRVILL-TSGTTGTPKGARRSGPG 220
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASVVVFEGAPTYP 468
G T K D P W V PM + G S +V +
Sbjct: 221 GIG-----TLKAILDRTP-----------WRAEEPTVIVAPMFHAWGFSQLVLAASLACT 264
Query: 469 -------DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521
D + D++D+++ T P + +M E RYS +SLR + G +
Sbjct: 265 IVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRM 324
Query: 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI-TPLPGAWPQKPGSATFPFFGVQPVIV 580
P F + GD I + + TE G MI T P P +A P G + I+
Sbjct: 325 RPDVVIAFMDQFGDV---IYNNYNATEAG--MIATATPADLRAAPDTAGRPAEGTEIRIL 379
Query: 581 DEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF-PGYYFTGDGCSRDKD 638
D+ E+ GE G + +++ T + + Y + K F G+ +GD D++
Sbjct: 380 DQDFREVPTGEV-GTIFVRND------TQF---DGYTSGSTKDFHDGFMASGDVGYLDEN 429
Query: 639 GYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698
G ++ GR D++I G + EVE L +HP AEAAV+GV+ E GQ + AFV L
Sbjct: 430 GRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKP 489
Query: 699 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
G + E K VR + + P I LP+ +GKI+RR L+
Sbjct: 490 GASATPETLKQ---HVRDNLANYKVPRDIVVLDELPRGATGKILRRELQ 535
|
Length = 537 |
| >gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 9e-32
Identities = 135/577 (23%), Positives = 218/577 (37%), Gaps = 124/577 (21%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G K A+ +E + GV +Y +L +++ + AN +G++KGD V ++L E
Sbjct: 21 GHKTALIFE-SSGGVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCW 79
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A+IGA+ + A + A + + + +++TS + I +D
Sbjct: 80 FGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED--------- 130
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L +TR DG + Q + T C + +D +L+
Sbjct: 131 -------ATPL---RHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILF 180
Query: 395 TSGSTGKPKGVLHTT-----GGYMVHTATTFKYAFDYKPSDVYW-----------CTADC 438
TSG+T +PKGV+ T GY + DVY CTA
Sbjct: 181 TSGTTSRPKGVVITHYNLRFAGYYSAWQCALRD------DDVYLTVMPAFHIDCQCTAAM 234
Query: 439 GWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS-WDIVDKYKVTIFYTAPTLVRSLM 496
+ GA+ V+ E Y S R+ W V KY+ TI P ++R+LM
Sbjct: 235 ------------AAFSAGATFVLLE---KY--SARAFWGQVCKYRATITECIPMMIRTLM 277
Query: 497 -------------RD--------GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
R+ E R +R+L S G
Sbjct: 278 VQPPSANDRQHCLREVMFYLNLSDQEKDAFEERFGVRLLTSYG----------------- 320
Query: 536 SRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
TET +I PG WP S P F + I D+ +
Sbjct: 321 ----------MTETIVGIIGDRPGDKRRWP----SIGRPGFCYEAEIRDDHNRPLPAGEI 366
Query: 593 GYLCIKSSWPGA--FRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDV 650
G +CIK PG F+ Y D + + G+ TGD D++G+ + R ++
Sbjct: 367 GEICIKGV-PGKTIFKEYYLDPKATAKV-LEA-DGWLHTGDTGYVDEEGFFYFVDRRCNM 423
Query: 651 INVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL 710
I G + E+E+ + +HP+ + VVG++ ++ + I AFV L EG SEE
Sbjct: 424 IKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEE---EF 480
Query: 711 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ + F P + LP+ SGKI+++ L+
Sbjct: 481 FAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
|
Length = 517 |
| >gnl|CDD|221322 pfam11930, DUF3448, Domain of unknown function (DUF3448) | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-31
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITN 200
+ Y E+Y+ S+EDP GFWA+ A E W + W +V + I+WF GG N
Sbjct: 3 DMEAYQELYEESIEDPEGFWAEQAEELDWFKPW-DKVLDWS-----NAPFIKWFVGGKLN 56
Query: 201 ICYNCLDRNIEAGLGDKVAIYWEAND 226
YNCLDR++E G GDKVAI WE ++
Sbjct: 57 ASYNCLDRHLETGRGDKVAIIWEGDE 82
|
This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 80 amino acids in length. This domain is found associated with pfam00501. This domain has a conserved DRH sequence motif. This domain has two completely conserved residues (N and A) that may be functionally important. Length = 82 |
| >gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 5e-31
Identities = 98/492 (19%), Positives = 166/492 (33%), Gaps = 99/492 (20%)
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261
+ L A D VA+ LTY++L + +LA L +GV G+ V
Sbjct: 228 TIHLLFEEQAATTPDAVALVRG------GQQLTYAELDARANRLARLLISLGVGPGETVA 281
Query: 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI 321
I +EL +A+LA + GA + + + ++ LA + D +P +++T
Sbjct: 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLT----------- 330
Query: 322 HLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
A L + + D D P
Sbjct: 331 ------QAHLRVDDVGLPGLAL------------------DDALSEIPDTDPIP------ 360
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFK------------YAFDY 426
+ + + +++YTSGSTG+PKGV + F +FD
Sbjct: 361 QALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLALASLSFDA 420
Query: 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
+++ +L GA +V+ D ++++ +T+
Sbjct: 421 SVFEIFG-----------------ALLEGARLVLAPALLQ-VDPAALLELLEAQGITVLL 462
Query: 487 TAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546
P L+R L+ + LR L S GE + + + + +R + + +
Sbjct: 463 LVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLL-NLYGP 521
Query: 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPV------IVDEKGVEIEGECSGYLCIKSS 600
TE T ++P + G PV I+D+ + G L I
Sbjct: 522 TEA-----TLDAPSFPISAELESRVPIGR-PVANTQLYILDQGLRPLPLGVPGELYIAG- 574
Query: 601 WPGAFRTLYGDHERYETTYFKPFP-GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
G G R + T + Y TGD DG GR D + + G RI
Sbjct: 575 -LGLAL---GYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIE 630
Query: 660 TAEVESALVSHP 671
E+E+AL P
Sbjct: 631 LGEIEAALAEQP 642
|
Length = 642 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 3e-30
Identities = 102/386 (26%), Positives = 153/386 (39%), Gaps = 73/386 (18%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
D + P +++TSGSTGKPK V+HT G ++ A P D + +
Sbjct: 74 PDLDRPATIIFTSGSTGKPKAVVHTWGNHLAS-ARGSAENLGLTPDDNWLLSL------- 125
Query: 444 HSYVTYGPM-------------LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
P+ L G ++V+ P D+ + ++ + VT PT
Sbjct: 126 -------PLFHVSGLAIVMRSLLAGGALVL----PDKFDAEAIAEALENHGVTHISLVPT 174
Query: 491 LVRSLMRDGNEYVTRYSRKSLRV--LGSVGEPINPSAWRWFFNVVGDSRC-----PISDT 543
++ L+ SLR LG G PI PS + P+ T
Sbjct: 175 QLQRLLESLGAR----WLSSLRAVLLG--GAPIPPSLLE---------QARQRGIPLYPT 219
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603
+ TET + T P + K GS P G + + I G + ++ P
Sbjct: 220 YGMTETASQVATLKPDDFLAKLGSVGKPLPGRE--------LRIVNPQDGEILVRG--PS 269
Query: 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG-HRIGTAE 662
F G++ TGD D +GY ++ GR DD+I +SG I E
Sbjct: 270 LFLGYLPQGGLTPPL---DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI-ISGGENIYPEE 325
Query: 663 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA 722
+E+ L+ HP EAAVVGV + GQ AFV + EEL+ L ++ +
Sbjct: 326 IEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPNDDPVSVEELQAFL----ADKLAKYK 381
Query: 723 APDKIHWAPGLPKTRSGKIMRRILRK 748
P + + P LP+ SGKI R LR+
Sbjct: 382 RPKRWYPLPELPRNASGKIDRAALRQ 407
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-29
Identities = 132/544 (24%), Positives = 216/544 (39%), Gaps = 48/544 (8%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK+A+ ++ G A+ TYS L +LAN+L G++ GD V LP E I L
Sbjct: 38 DKIAV---VDNHG--ASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYL 92
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
AC ++GAV + + L + C+ K+ P VD L
Sbjct: 93 ACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFF-------APTLFKQTRPVDLIL-PLQ 144
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ + + + T + Q ++ Y ++ +L+T
Sbjct: 145 NQLPQLQQIVGVDKLAPATSSLSLSQ---------IIADYEPLTTAITTHGDELAAVLFT 195
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+ G PKGV+ T ++ + + + DV+ A G TG + P L G
Sbjct: 196 SGTEGLPKGVMLTHNN-ILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIG 254
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
A V+ + PD+ ++++ + T A + L+ + S +LR
Sbjct: 255 ARSVLLD--IFTPDA--CLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLS--ALRFFL 308
Query: 516 SVGEPINPS-----AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF 570
G I P + G + + TE+ + L + + +
Sbjct: 309 CGGTTI-PKKVARECQQR-----GIKLLSV---YGSTESSPHAVVNLDDPLSRFMHTDGY 359
Query: 571 PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630
GV+ +VDE + C G S P F + E T G+Y++G
Sbjct: 360 AAAGVEIKVVDEARKTLPPGCEGEEA--SRGPNVFMGYLDEPEL--TARALDEEGWYYSG 415
Query: 631 DGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGI 690
D C D+ GY +TGR D+I G I + EVE L+ HP+ +A VV + E G+
Sbjct: 416 DLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERS 475
Query: 691 YAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750
A+V L +S L + + RK++ + P+ I LP+T SGKI + +LRK
Sbjct: 476 CAYVVLKAPH-HSLTLEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDI 534
Query: 751 SRQL 754
R+L
Sbjct: 535 MRRL 538
|
Length = 547 |
| >gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 4e-29
Identities = 132/548 (24%), Positives = 213/548 (38%), Gaps = 61/548 (11%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ + G +Y +L +V ++A L +GV +GD V LP E L
Sbjct: 37 DKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYL 96
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN--------AVKRG--PKAIHLKD 325
ACARIGAV + + F L+ + KV + + A+ R K L+
Sbjct: 97 ACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQ 156
Query: 326 IV--DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+V D D+ S D L R++T P
Sbjct: 157 VVVIDGDGDD------SFDRVLMTPE-----RDDT--------------PDAAAILAGPR 191
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWI 441
+D L+YTSG+TG+PKGV+HT + YA + DV +
Sbjct: 192 PSPDDVTQLIYTSGTTGEPKGVMHTANTLF---SNIHPYAERLELGGGDVILMASPMAHQ 248
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501
TG Y P++ A+ V+ + + + R+ +++ + VT + + L R E
Sbjct: 249 TGFMYGLMMPLILNATAVLQD---IW-NPARAAELIRETGVTFTMASTPFLTDLCRAVKE 304
Query: 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
SL G PI + ++G W TE G +T A
Sbjct: 305 SGAPVP--SLFTFLCAGAPIPGILVERAWELLGALIV---SAWGMTENGAVTVTEPDDAL 359
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
+ + P GV+ ++D G ++ +G L ++ + +G + +
Sbjct: 360 EKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGC------SNFGGYLKRPHLNST 413
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
G++ TGD +D +GY + GR DVI G I E+E+ L HP A+ A+V
Sbjct: 414 DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAY 473
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWAPGLPKTRSGK 740
E G+ A V G ++V ++ Q A P+++ LP T +GK
Sbjct: 474 PDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLEVVDALPATPAGK 530
Query: 741 IMRRILRK 748
I + LR+
Sbjct: 531 IQKFRLRE 538
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-29
Identities = 96/390 (24%), Positives = 158/390 (40%), Gaps = 63/390 (16%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTG------GYMVHTATTFKYAFDYKPSDVYWCTAD 437
D +D ++L+TSGSTGKPKGV + +MV FD DV+ A
Sbjct: 94 ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVED-------FDLTEGDVFSNQAP 146
Query: 438 CGWITGHS-----YVTYGPMLNGASVVVFEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTL 491
S + + + +GA++ V + + + ++ +T++ + P+
Sbjct: 147 ------FSFDLSVFDLFPALASGATLYVI--PKEQIADPLALFEFLKEHGLTVWVSVPSF 198
Query: 492 VRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET-- 549
L+ + S SLR GE + + ++R I + + TE
Sbjct: 199 ASLLLLSRE--LNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNAR--IINLYGPTEATV 254
Query: 550 --GGFMIT--------PLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599
+ +T PLP +P KPG +I+DE G + G L I
Sbjct: 255 AVTAYEVTPEPLSRNEPLPIGYP-KPGLRA--------LILDEDGRPVPPGEEGELVIA- 304
Query: 600 SWPGAFRTL--YGDHERYETTYFKPFP-GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGH 656
G + + E+ +F+ +Y TGD + DG GR D I + G+
Sbjct: 305 ---GPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGY 361
Query: 657 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK 716
RI E+E+AL + P EA V+ V K + AFV EG ++ L+K L +K
Sbjct: 362 RIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFVVGKEGALDTKALKKEL----KK 417
Query: 717 QIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
++ + P + + LP +GKI R+ L
Sbjct: 418 RLPPYMIPRRFVYLDSLPLNANGKIDRKAL 447
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-29
Identities = 133/559 (23%), Positives = 213/559 (38%), Gaps = 100/559 (17%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A+ D LTY QL ++ + + +G+ GDAV + E+ +A+
Sbjct: 27 DRPALVLG------DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIG 80
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA--VKRG----PKAIHLKDIVDA 329
A G + + S D A + D +I A V+R + LK ++
Sbjct: 81 AAQLAGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVL-- 138
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
L DG D+ K+ V D
Sbjct: 139 TLGPVP--------------------------DGVDLL--AAAAKFGPAPLVAAALPPDI 170
Query: 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTY 449
L YT G+TGKPKGV+ T + A A+ W ++
Sbjct: 171 AGLAYTGGTTGKPKGVMGTHRS-IATMAQ--------------IQLAEWEWPADPRFLMC 215
Query: 450 GP------------MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
P +L G +V+V D +++ ++T + PT++ +L+
Sbjct: 216 TPLSHAGGAFFLPTLLRGGTVIVLAKF----DPAEVLRAIEEQRITATFLVPTMIYALL- 270
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI-SDTWWQTETGGFMITP 556
D + TR SL + P++P G PI + + QTE IT
Sbjct: 271 DHPDLRTR-DLSSLETVYYGASPMSPVRLAEAIERFG----PIFAQYYGQTEAPMV-ITY 324
Query: 557 LP-----GAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYG 610
L P++ S P G++ ++DE G E+ GE G +C++ P + G
Sbjct: 325 LRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGE-VGEICVRG--PL---VMDG 378
Query: 611 DHERYETT--YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
R E T F+ G+ TGD D+DG++++ R D+I G + EVE L
Sbjct: 379 YWNRPEETAEAFRD--GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLA 436
Query: 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
HP A+ AV+GV E G+ + A V L G L V+++ G+ AP ++
Sbjct: 437 EHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAA---ELQAHVKERKGSVHAPKQVD 493
Query: 729 WAPGLPKTRSGKIMRRILR 747
+ LP T GK ++ LR
Sbjct: 494 FVDSLPLTALGKPDKKALR 512
|
Length = 524 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 6e-29
Identities = 107/413 (25%), Positives = 151/413 (36%), Gaps = 83/413 (20%)
Query: 373 PKYPT----------KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
P YP + D +D +++YTSGSTG+PKGV A
Sbjct: 81 PAYPPERLAYILEDAGARLVLTDPDDLAYVIYTSGSTGRPKGVAIEHRN-----AAAL-- 133
Query: 423 AFDYKPSDVYWCTADCG--WITGHSYVT-----------YGPMLNGASVVVFEGAPTYPD 469
+ W A + G T + P+ G VV+ + A PD
Sbjct: 134 --------LQWAAAVFSAEELAGVLAATSICFDLSVFEIFVPLSTGGRVVLADNALALPD 185
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF 529
K +VT+ T P+ R L+R S+R + GEP+ +
Sbjct: 186 LPA------KAEVTLINTVPSAARELLRHDA------LPSSVRTVNLAGEPLPQELVQRL 233
Query: 530 ---------FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580
+N+ G P DT + T + P P S P G Q ++
Sbjct: 234 YALPQVERVYNLYG----PSEDTTYST---YAEVEPGASRTP----SIGRPLAGTQAYVL 282
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGD----HERYETTYFKPFPG--YYFTGDGCS 634
D + G L I G R G ER+ F PG Y TGD
Sbjct: 283 DAHLQPVPVGVPGELYI--GGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGDLVR 340
Query: 635 RDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 694
R DG GR+DD + V G RI E+E+AL S P AEA VV + + + A++
Sbjct: 341 RRADGQLEYLGRIDDQVKVRGFRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQLVAYI 400
Query: 695 TLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
G E+LR L ++ A+ P + LP T +GKI R+ L
Sbjct: 401 VADPGAAIDIEDLRARL----ATRLPAYMVPSRFVRLDALPLTPNGKIDRKAL 449
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 9e-29
Identities = 138/557 (24%), Positives = 236/557 (42%), Gaps = 76/557 (13%)
Query: 219 AIYWEANDPGVDA--------TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLME 269
I+ N G A +++YS+L V +A L +GV++GD V++ LP +
Sbjct: 45 FIFSHHNHNGDTALIDSSTGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVY 104
Query: 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS--NAVKRGPKAIHLKDIV 327
P+ LA +G + + + S + +R++DC + TS N K P
Sbjct: 105 FPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSP--------- 155
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ-----DVVPKYPTKCEVE 382
+ V V EN ++K + + D VPK
Sbjct: 156 -----------LGVPVIGVPENYD----FDSKRIEFPKFYELIKEDFDFVPKPV------ 194
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYA-FDYKPSD-VYWCTADC 438
+ +D ++Y+SG+TG KGV+ T MV F+ + ++Y SD VY
Sbjct: 195 -IKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPM 253
Query: 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
I G S G + G+++VV D+ ++D++KVT F P ++ +L +
Sbjct: 254 FHIYGLSLFVVGLLSLGSTIVVMRRF----DASDMVKVIDRFKVTHFPVVPPILMALTKK 309
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-----TGGFM 553
V KSL+ + P++ + F + + TE T GF
Sbjct: 310 AKG-VCGEVLKSLKQVSCGAAPLSGKFIQDFVQTL--PHVDFIQGYGMTESTAVGTRGFN 366
Query: 554 ITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDH 612
L K S +Q +VD G + G L I+ PG + +
Sbjct: 367 TEKL-----SKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQG--PGVMKGYLNNP 419
Query: 613 ERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672
+ ++T K G+ TGD D+DGY ++ R+ ++I G +I A++E+ L+SHP+
Sbjct: 420 KATQSTIDKD--GWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE 477
Query: 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPG 732
+AAV V + G+ AFV +G S+E +++ V KQ+ + K+ +
Sbjct: 478 IIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQE---AVINYVAKQVAPYKKVRKVVFVQS 534
Query: 733 LPKTRSGKIMRRILRKI 749
+PK+ +GKI+RR L++
Sbjct: 535 IPKSPAGKILRRELKRS 551
|
Length = 560 |
| >gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 4e-28
Identities = 109/374 (29%), Positives = 157/374 (41%), Gaps = 34/374 (9%)
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+T G+TG PK H+ V A P DV + G P
Sbjct: 7 YFHTGGTTGAPKLARHSHRN-EVANAWMAALLSGLGPGDVLLNGLPLFHVGGAIVTGLAP 65
Query: 452 MLNGASVVVFEGAPTYPDS---GRSWDIVDKYKVTIFYTAPTLVRSL--MRDGNEYVTRY 506
+ GA+VV+ + + W IV++Y+VT+ PT++ +L + G+ ++
Sbjct: 66 LARGATVVL-PTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPLGDADIS-- 122
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKP 565
SLR + P+ R F V G P+ + + TE TG I P G P++P
Sbjct: 123 ---SLRYALTGAAPLPVEVARRFEAVTG---VPVVEGYGMTEGTGVSAINPRGG--PRRP 174
Query: 566 GSA--TFPFFGVQPVIVDEKGVEIEGECS----GYLCIKSSWPGAFRTLYGDHERYETTY 619
GS P+ V+ +D G +C+ G L I+ P F Y +
Sbjct: 175 GSVGLRLPYTRVRVAKLDAGGALGR-DCAPGEVGVLAIRG--PNVFPG-YLNDAHNAGAR 230
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
+ G+ TGD D DGY WLTGR D+I GH I +E AL+ HP A AA V
Sbjct: 231 LED--GWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQMIEEALLRHPAVALAAAV 288
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIHWAPGLPKTRS 738
G G+ A+V L G +E L+ V+ +I AA P I+ LP T
Sbjct: 289 GRPDAYAGELPVAYVQLKPGATVTEG---ELLAFVKARIPERAAVPKAIYIIDALPLTAV 345
Query: 739 GKIMRRILRKIASR 752
GKI + LR A+
Sbjct: 346 GKIFKPRLRCDAAE 359
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359 |
| >gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-28
Identities = 121/550 (22%), Positives = 206/550 (37%), Gaps = 90/550 (16%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAM 274
D++AI + +TY QL + V ++A YL ++ VKKG+ + I +E + +
Sbjct: 17 DRIAII------TEEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A++ + + + + L ++ D V+ K + AL
Sbjct: 71 FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVE------------KTFQNMALSMQ 118
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
S + + +T + D + V K + + Y
Sbjct: 119 KVSYVQRVISITSLKEIE--------DRKID----NFVEK----------NESASFIICY 156
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TGKPKG + T M A +A D D I G + +
Sbjct: 157 TSGTTGKPKGAVLTQEN-MFWNALNNTFAIDLTMHDRSIVLLPLFHIGGIGLFAFPTLFA 215
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G ++V P + ++ +++K+KVT+ PT+ ++L+
Sbjct: 216 GGVIIV----PRKFEPTKALSMIEKHKVTVVMGVPTIHQALIN----------------- 254
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPI-------------SDTWWQTETGG--FMITPLPG 559
S E N + RWF+N G + CP + TET FM++
Sbjct: 255 CSKFETTNLQSVRWFYN--GGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDA 312
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619
+K GS P ++DE ++E G L I+ P + + + E T
Sbjct: 313 R--RKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG--PNVMKEYWNRPDATEETI 368
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
G+ TGD D+DG+ ++ GR ++I G I EVE + E AVV
Sbjct: 369 QD---GWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVV 425
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
G +H G+ AF+ E+ ++ R + + P +I + LPK +G
Sbjct: 426 GRQHVKWGEIPIAFIVKKSSSVLIEK---DVIEHCRLFLAKYKIPKEIVFLKELPKNATG 482
Query: 740 KIMRRILRKI 749
KI + L
Sbjct: 483 KIQKAQLVNQ 492
|
Length = 496 |
| >gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 125/551 (22%), Positives = 196/551 (35%), Gaps = 94/551 (17%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ TLTY +L ++ +A L+ GV GD V + +P E +A+
Sbjct: 1 PDATAVIDG------AGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAV 54
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L GA + D A+R I + A
Sbjct: 55 LGILLAGAA----YVPIDPDQPAERRAA------ILARA------GARAVLTDPGLAQPE 98
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ V D VD +D ++++
Sbjct: 99 EAPDLLVVAD-------------------------DAAAAESPAPPPPRVDPDDLAYVIF 133
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH----SYVTYG 450
TSGSTG+PKGV+ T V+T F P+D + H Y +G
Sbjct: 134 TSGSTGEPKGVMITHRA-AVNTILDVNRRFGVGPADRVLALSAL-----HFDLSVYDIFG 187
Query: 451 PMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR-- 508
+ GA++V+ + A D ++V ++ VT++ + P L+ L+ Y +R
Sbjct: 188 ALSAGAALVLPDEA-RRRDPDHWAELVQRHGVTVWNSVPALMDMLL----TYAEDAARLL 242
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRC-----PISDTWWQTETGGFMITPLPGAWPQ 563
SLR++ G+ I R + +R + W + I + W
Sbjct: 243 PSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASIWSIY---YPIDDVDPDWRS 299
Query: 564 KP-GSATFPFFGVQPVIVDEKGVE----IEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618
P G P + ++DE G + + GE L I G +GD E
Sbjct: 300 IPYGK---PLPNQKFYVLDEDGRDCPDWVPGE----LYIGG--VGVALGYWGDPELTAER 350
Query: 619 YFKPFPG--YYFTGD-GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
+ G Y TGD G R DG GR D + + G+R+ E+E+AL HP
Sbjct: 351 FITHRTGERLYRTGDLGRYRP-DGTIEFLGRADHQVKIRGYRVELGEIEAALARHPGVQR 409
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735
A VV V + AFV +G L A+ + + A+ P + LP
Sbjct: 410 AVVVVVGDGGAKA-LAAFVVAEDGAAVDAA---VLRAALAELLPAYMVPSRFVVLDALPL 465
Query: 736 TRSGKIMRRIL 746
T +GK+ R+ L
Sbjct: 466 TANGKVDRKAL 476
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476 |
| >gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 126/544 (23%), Positives = 208/544 (38%), Gaps = 95/544 (17%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L Q+ LA L +G+K+GD ++ LP + E I A ++G V A FS
Sbjct: 49 WSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFALLKLGVAP--VLALFS 106
Query: 293 SDSL-----AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
A +I +P + I +A L D D A +K T
Sbjct: 107 HRKSELTAYASQI---EPALYI-------IDRAHSLFDYDDFARQLQSK-------LPTL 149
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
N + + +W + P P K +++ F + GSTG PK +
Sbjct: 150 RN---IIVAGQTGEAELFLWLES--PAEPVKFPP--TKSDEVAFFQLSGGSTGTPKLIPR 202
Query: 408 TTGGYMVH-TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA-- 464
T Y + Y C H+Y P GA V + G
Sbjct: 203 THNDYYYSVRRSVEICWLT--QQTRYLCALP----AAHNYPLSSP---GALGVFYAGGCV 253
Query: 465 --PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522
P + +++++KVT+ P V M+ ++ R SL++L G +
Sbjct: 254 VLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKS--RADLSSLKLLQVGGAKFS 311
Query: 523 PSAWRWFFNVVGDSRCPISDTWWQTE-----------------TGGFMITPLPGAWPQKP 565
+A R V G C + + E T G ++P
Sbjct: 312 AAAARRVPAVFG---CQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVR---- 364
Query: 566 GSATFPFFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
+VD+ G + GE +G L + P FR Y E +
Sbjct: 365 -------------VVDDHGNPVAPGE-TGMLLTRG--PYTFRGYYKAPEHNAAAFDAE-- 406
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G+Y+TGD +GY + GR D IN G +I E+E+ L++HP +AA+V + E
Sbjct: 407 GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDE 466
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMR 743
+ G+ AF+ + + + +LR+ L R++ + + PD++ + LP T GK+ +
Sbjct: 467 LLGEKSCAFIVVRDPALKAAQLRRFL----RERGLAEYKLPDRVEFVDSLPLTAVGKVDK 522
Query: 744 RILR 747
+ LR
Sbjct: 523 KALR 526
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526 |
| >gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 130/543 (23%), Positives = 197/543 (36%), Gaps = 94/543 (17%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
TY++ + A+ L GVK+GD V + +E L CA +GA+
Sbjct: 47 WTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAI--------- 97
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS---VDVCLTYEN 349
+ N RGP+ H+ SG V+ L
Sbjct: 98 ---------------AVPINTALRGPQLEHI----------LRNSGARLLVVEAALLAAL 132
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV---------EWVDAE-----DPLFLLYT 395
++A + +W D A D +LYT
Sbjct: 133 EAADPGD----LPLPAVWLLDAPASVSVPAGWSTAPLPPLDAPAPAAAVQPGDTAAILYT 188
Query: 396 SGSTGKPKGVLHTTGGYM---VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
SG+TG KGV + ++A + DV + T + + +
Sbjct: 189 SGTTGPSKGVCCPHAQFYWWGRNSAE----DLEIGADDVLYTTLPLFHTNALN-AFFQAL 243
Query: 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
L GA+ V+ P + SG W V ++ T+ Y +V L +R
Sbjct: 244 LAGATYVL---EPRFSASG-FWPAVRRHGATVTYLLGAMVSIL--LSQPARESDRAHRVR 297
Query: 513 V-LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
V LG +A+R F V + D + TET + Q+PGS
Sbjct: 298 VALGPGVPAALHAAFRERFGV------DLLDGYGSTETNFVIAVTHGS---QRPGSMGRL 348
Query: 572 FFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY-GDHER----YETTYFKPFPGY 626
G + +VDE E+ G L +++ P AF T Y G E+ + +F
Sbjct: 349 APGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFH----- 403
Query: 627 YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVK 686
TGD RD DG+ R+ D I G I + EVE L+SHP A AAV V E+
Sbjct: 404 --TGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELG 461
Query: 687 GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+ A V L +G +LV ++ FA P + + LPKT +GK+ + +L
Sbjct: 462 EDEVMAAVVLRDGTALEPV---ALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVL 518
Query: 747 RKI 749
R+
Sbjct: 519 REQ 521
|
Length = 542 |
| >gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 116 bits (291), Expect = 4e-27
Identities = 135/520 (25%), Positives = 222/520 (42%), Gaps = 26/520 (5%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+T+S +V + ANYL+ +GV+KGD V I LP + I G + ++
Sbjct: 50 ITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYT 109
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN-QS 351
L ++ D KV++ + V + ++ + + L Y Q
Sbjct: 110 ERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQK 169
Query: 352 AMTRENTKWQDGRDI-WWQDVVPKYPTKCEVEWVDAEDPLFLL-YTSGSTGKPKGVLHTT 409
+ K + I W V + T EV D E+ L LL YT G+TG PKGV+ T
Sbjct: 170 KQSNLVVKVSESETIHLWNSVEKEVNTGVEVP-CDPENDLALLQYTGGTTGFPKGVMLTH 228
Query: 410 GGYMVHTATTFKYAFDYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ +T ++ ++ K +V + G + V ++ G +V+ P +
Sbjct: 229 KNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLI---PKF- 284
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528
D ++ + K+KVT+F APT+ +L+ + + Y S+R S P+
Sbjct: 285 DMKMVFEAIKKHKVTLFPGAPTIYIALL--NSPLLKEYDISSIRACISGSAPLPVEVQEK 342
Query: 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK-PGSATFPFFGVQPVIVD-EKGVE 586
F V G + + + TE+ +T W ++ PGS P+ + +I+ E G
Sbjct: 343 FETVTGGK---LVEGYGLTESSP--VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEA 397
Query: 587 IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR 646
+ G + +K + + G + E T G+ TGD D+DG+ ++ R
Sbjct: 398 LPPGEIGEIVVKGP-----QIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDR 452
Query: 647 VDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEEL 706
D+I SG + EVE L H + E +GV +G+ + AFV L EG SEE
Sbjct: 453 KKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEE- 511
Query: 707 RKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
L RK + A+ P + LPKT GKI+RR+L
Sbjct: 512 --ELNQFARKYLAAYKVPKVYEFRDELPKTTVGKILRRVL 549
|
Length = 563 |
| >gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-27
Identities = 142/573 (24%), Positives = 238/573 (41%), Gaps = 98/573 (17%)
Query: 214 LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA 273
D++A+ W D + T+ ++ +V LA L GV+KGD ++++ ++ +
Sbjct: 20 FPDRIALVWG------DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFES 73
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
M A R+GAV V F R +V + A G +A+ I A E
Sbjct: 74 MFAAFRLGAV--WVPTNF-------RQT--PDEVAYLAEA--SGARAM----ICHADFPE 116
Query: 334 ----CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAED 388
+ + + A G D + +V ++ + VD +D
Sbjct: 117 HAAAVRAASPDLTHVVAIGGARA----------GLDY--EALVARHLGARVANAAVDHDD 164
Query: 389 PLFLLYTSGSTGKPK-GVL-HTTGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITGH 444
P + +TSG+TG+PK VL H +++ H A D P D
Sbjct: 165 PCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLA-------DLMPGTTE---QDA------ 208
Query: 445 SYVTYGPMLNGASV----VVFEGAPTYP------DSGRSWDIVDKYKVTIFYTAPTLVRS 494
S V P+ +GA + V GA T D W +V++++VT +T PT+++
Sbjct: 209 SLVV-APLSHGAGIHQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKM 267
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 554
L+ V RY SLR + G P+ + + +G + + E G I
Sbjct: 268 LVEH--PAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKV---LVQYFGLGEVTG-NI 321
Query: 555 TPLPGAW------PQ-KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRT 607
T LP A P + G+ F G++ I D++G E+ +G +C+ P F
Sbjct: 322 TVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIG--PAVFAG 379
Query: 608 LYGDHERYETTYFKPFPGYYF-TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESA 666
Y + E K F +F TGD D G+ ++TGR D+ G + E+E
Sbjct: 380 YYNNPEANA----KAFRDGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEK 435
Query: 667 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDK 726
L++HP +E AV+GV V G+ A +G P E L+ + ++ + P +
Sbjct: 436 LLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEA---ELLAWLDGKVARYKLPKR 492
Query: 727 IHWAPGLPKTRSGKIMRRILRKIASRQLDELGD 759
+ LPK+ GKI ++++R+ +L+E G
Sbjct: 493 FFFWDALPKSGYGKITKKMVRE----ELEERGL 521
|
Length = 528 |
| >gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 8e-27
Identities = 135/536 (25%), Positives = 232/536 (43%), Gaps = 70/536 (13%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
TY+ + ++A L +G+++GD V++ LP E +A L +R GAV +
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPF 108
Query: 291 FSSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++ +A++ K++IT S V + + +D+ + CL +
Sbjct: 109 YTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDD------PPEGCLHF-- 160
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
S +T+ + ++ +P EVE + +D + L Y+SG+TG PKGV+ T
Sbjct: 161 -SELTQAD-----------ENELP------EVE-ISPDDVVALPYSSGTTGLPKGVMLTH 201
Query: 410 GGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
G + A + DV C I + V + GA++++ P
Sbjct: 202 KGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYSLNSVLLCGLRVGAAILIM---PK 258
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS-- 524
+ + G +++ ++KVTI P +V ++ + + V +Y S+R++ S P+
Sbjct: 259 F-EIGALLELIQRHKVTIAPFVPPIVLAIAK--SPVVEKYDLSSIRMVLSGAAPLGKELE 315
Query: 525 -AWRWFFNVVGDSRCP---ISDTWWQTETG-------GFMITPLPGAWPQKPGSATFPFF 573
A+R ++ P + + TE G F P P K GS
Sbjct: 316 DAFR--------AKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFP----VKSGSCGTVVR 363
Query: 574 GVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
+ IVD E G + G +CI+ P + D E T K G+ TGD
Sbjct: 364 NAELKIVDPETGASLPRNQPGEICIRG--PQIMKGYLNDPEATANTIDKD--GWLHTGDI 419
Query: 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692
D D ++ R+ ++I G ++ AE+E+ L+SHP A+AAVV ++ EV G+ A
Sbjct: 420 GYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVA 479
Query: 693 FVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
FV G +E+ K V KQ+ + K+ + +PK SGKI+R+ LR
Sbjct: 480 FVVRSNGSEITEDEIKQF---VAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRA 532
|
Length = 537 |
| >gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 112/517 (21%), Positives = 190/517 (36%), Gaps = 63/517 (12%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
TY++L V +LA L+ G G+ + + + L ACAR+GA++ + S+
Sbjct: 24 TYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSA 83
Query: 294 DSLAQRIMDCKPKVVITSNAVKRG-PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
L + D +P++++ +AV G L + +A +
Sbjct: 84 SELDALLQDAEPRLLLGDDAVAAGRTDVEDLAAFIASA-----------------DALEP 126
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ + E +L+TSG++G+PKGV+ +
Sbjct: 127 ADTPS--------------------------IPPERVSLILFTSGTSGQPKGVMLSERN- 159
Query: 413 MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGR 472
+ TA F + C A I G + G S++V G GR
Sbjct: 160 LQQTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGR 219
Query: 473 SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532
D +T ++ P + ++ L L + G P +
Sbjct: 220 LGDP--ALGITHYFCVPQMAQAFRAQPGFDAAALRH--LTALFTGGAPHAAEDILGWL-- 273
Query: 533 VGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC 591
D P+ D + +E G + K G+A P VQ +VD++G +
Sbjct: 274 --DDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331
Query: 592 SGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVI 651
G L ++ P + + T G++ TGD RD DG+ W+ R D+
Sbjct: 332 PGELLLRG--PNLSPGYWRRPQ--ATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMF 387
Query: 652 NVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSL 710
G + AE+E+ L HP E AVVG+ G+ Y + +G P E +R L
Sbjct: 388 ISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHL 447
Query: 711 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
++ + P + LP+T SGK+ + LR
Sbjct: 448 S----TRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
|
Length = 488 |
| >gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-26
Identities = 133/555 (23%), Positives = 214/555 (38%), Gaps = 61/555 (10%)
Query: 224 ANDPGVDAT------LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277
P A L+ ++L V +LA +L GV++GD V ++LP +E + LAC
Sbjct: 21 RARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLAC 80
Query: 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS 337
AR+GA V + S +A + + + ++ K A L + AL
Sbjct: 81 ARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALP--PLR 138
Query: 338 GISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT-S 396
I+V V + A G + + P E D LL+T S
Sbjct: 139 AIAV-VDDAADATPAPAP-------GARVQLFALPDPAPPAAAGERAADPDAGALLFTTS 190
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD-CGWITGHSYVTYGPMLNG 455
G+T PK VLH ++ A A+ Y P V CG + G S + G + G
Sbjct: 191 GTTSGPKLVLHRQAT-LLRHARAIARAYGYDPGAVLLAALPFCG-VFGFSTLL-GALAGG 247
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
A +V P + D+ R+ + +++VT + ++R ++ E R S R+ G
Sbjct: 248 APLVCE---PVF-DAARTARALRRHRVTHTFGNDEMLRRILDTAGE---RADFPSARLFG 300
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE-----TGGFMITP-----LPGAWPQKP 565
A + P++ + +E P G P P
Sbjct: 301 FAS---FAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASP 357
Query: 566 GSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625
+ V+ + + +GE SG + I++ P R Y D+ G
Sbjct: 358 EAR------VRARDPQDGALLPDGE-SGEIEIRA--PSLMRG-YLDNPDATARALTD-DG 406
Query: 626 YYFTGD-GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
Y+ TGD G +R + + T R+ D + + G + AE+E AL + P A A VVG +
Sbjct: 407 YFRTGDLGYTRGDGQFVYQT-RMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRD 465
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG---KI 741
K AFV +G E L+ A R+ + F P ++ P T S KI
Sbjct: 466 GKTV-PVAFVIPTDGASPDEA---GLMAACREALAGFKVPARVQVVEAFPVTESANGAKI 521
Query: 742 MRRILRKIASRQLDE 756
+ LR++A +L
Sbjct: 522 QKHRLREMAQARLAA 536
|
Length = 540 |
| >gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 102/383 (26%), Positives = 141/383 (36%), Gaps = 56/383 (14%)
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTG----GYMVHT---------ATTFKYAFDYKPSDVYW 433
D L++LYT G+TG PKGV+ + K + +
Sbjct: 3 ADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAA-GGAGTRF 61
Query: 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIF------YT 487
A C + G L VV + D R W V+K++V +
Sbjct: 62 LPA-CPLMHGAGQWLALSALFAGGTVVLLPDDKF-DPDRVWRTVEKHRVNTLVIVGDAFA 119
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS---AW-RWFFNVVGDSRCPISDT 543
P L+ +L G RY SLR + S G +P N+ + D
Sbjct: 120 RP-LLEALEAAG-----RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLA------LVDA 167
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIE---GECSGYLCIKS 599
+ETGG SAT F G V++DE G E+ GE G++
Sbjct: 168 LGASETGGGGS----SVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGE-VGWIARGG 222
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 657
P + Y D E+ T F+ G Y GD + DG L GR IN G +
Sbjct: 223 RVPLGY---YKDPEKTAKT-FREIDGVRYAVPGDFARVEADGTITLLGRGSVCINTGGEK 278
Query: 658 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 717
+ EVE AL +HP A+A VVGV E GQ + A V L G L R+
Sbjct: 279 VFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA---ELRDHCRQH 335
Query: 718 IGAFAAPDKIHWAPGLPKTRSGK 740
+ + P I +P+ SGK
Sbjct: 336 LAGYKLPRAIVVVDTVPRAPSGK 358
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365 |
| >gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-25
Identities = 117/529 (22%), Positives = 192/529 (36%), Gaps = 90/529 (17%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
+ R E + + G +TY +L ++V LA+ L +G+ GD V I
Sbjct: 16 HTLPKRLAERVKDRPDGVALMYKELGGWEAITYRELYERVRALASGLLSLGIPAGDRVAI 75
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
+ E IA LA +GAV +++ + + LA + + + KV+ N + +
Sbjct: 76 FAANRPEWAIADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQ-ELLDLVLP 134
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQ--SAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
+ + +D + V + L E A+ E + G ++ D +
Sbjct: 135 VLEDCPKVVD------LIVIIDLVREAVEAKALVLEVFPDE-GISLFLIDSAGL---EGR 184
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
+ +D ++YTSG+TG PKGV+ T + A + P D
Sbjct: 185 IAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAH 244
Query: 441 ITGHSYVTYGPMLNGASVVVFEG-----------APTY----PDSGRSWDIVDK------ 479
I ++ + G +V+ E PT P R W+ V K
Sbjct: 245 IFERAFEGGLALYGGVTVLFKEDPRTLLEDLKEVRPTVMIGVP---RVWEKVYKGIMEKV 301
Query: 480 -----YKVTIFYTA-------------PTLVRSLMRDGNEYVTRYSRKSL----RVLGSV 517
+ +F A S + + V R R +L R S
Sbjct: 302 AKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALGGRIRYALSG 361
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTET-GGFMITPLPGAWPQKPGSATFPFFGVQ 576
G P++P FF +G PI + + TET + P G+ P G++
Sbjct: 362 GAPLSPELLH-FFRSLG---IPILEGYGLTETSAVVSVNPP---DRFVLGTVGKPLPGIE 414
Query: 577 PVIVDEKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP--GYYFTGDG 632
I D+ + + G GY Y + E T + F G++ TGD
Sbjct: 415 VKIADDGEILVRGPNVMKGY--------------YKNPE--ATA--EAFTEDGWFRTGDL 456
Query: 633 CSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVG 680
D+DGY +TGR ++I +S G I +ES L P + VVG
Sbjct: 457 GELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG 505
|
Length = 613 |
| >gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 103/511 (20%), Positives = 186/511 (36%), Gaps = 79/511 (15%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ L + LA LK G++ G V + +E+ + + AC +GA +++ +
Sbjct: 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTE 60
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353
+ ++ D ++++T + KD +LD +G
Sbjct: 61 NERTNQLEDLDVQLLLT-------DSLLEEKDFQADSLDRIEAAG--------------- 98
Query: 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM 413
+Y T + + L++TSG+TGKPK V HT +
Sbjct: 99 --------------------RYETSLSASFNM-DQIATLMFTSGTTGKPKAVPHTFRNHY 137
Query: 414 VHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473
A K + D + + I+G S + + ++ GA++ + + +
Sbjct: 138 AS-AVGSKENLGFTEDDNWLLSLPLYHISGLS-ILFRWLIEGATLRIVDKFNQLLEM--- 192
Query: 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS-VGEPINPSAWRWFFNV 532
+ +VT PT + L+ +G + + + + GS + P+ A
Sbjct: 193 ---IANERVTHISLVPTQLNRLLDEGG---HNENLRKILLGGSAIPAPLIEEA------- 239
Query: 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
PI ++ TET + T P +P P G + I +
Sbjct: 240 -QQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGR-PLAGREIKIKVDNKEGH----- 292
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G + +K + Y + + G++ TGD D +G+ ++ GR DD+I
Sbjct: 293 GEIMVKG--ANLMKG-YLYQGELTPAFEQQ--GWFNTGDIGELDGEGFLYVLGRRDDLII 347
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
G I E+E+ L HP EA VV GQ A++ E +L L
Sbjct: 348 SGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVS-ESDISQAKLIAYL-- 404
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743
+++ + P LP SGKI+R
Sbjct: 405 --TEKLAKYKVPIAFEKLDELPYNASGKILR 433
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436 |
| >gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 5e-25
Identities = 133/530 (25%), Positives = 218/530 (41%), Gaps = 66/530 (12%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
++Y QL LA L D G++ GD V + E + + A R G + +
Sbjct: 24 QVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHL 83
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE-CAKSGISVDVCLTYENQ 350
++ + D +V++ S AALD AK G + + L++ +
Sbjct: 84 TAPEADYIVGDSGARVLVAS-----------------AALDGLAAKVGADLPLRLSFGGE 126
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--FLLYTSGSTGKPKGV--- 405
DG + + P E P +LY+SG+TG PKG+
Sbjct: 127 I----------DGFGSFEAALAGAGPRL-------TEQPCGAVMLYSSGTTGFPKGIQPD 169
Query: 406 -----LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN--GASV 458
+ G +V A F +D SD+Y+ +A I + + + M++ G +V
Sbjct: 170 LPGRDVDAPGDPIVAIARAF---YDISESDIYYSSAP---IYHAAPLRWCSMVHALGGTV 223
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ A + D+ + V++Y++T+ PT+ L++ + TRY SLR +
Sbjct: 224 VL---AKRF-DAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAA 279
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P + +G PI ++ + M W PGS G
Sbjct: 280 APCPVDVKHAMIDWLG----PIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLGDLH- 334
Query: 579 IVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK 637
I D+ G E+ G + P FR L D E+ P + GD S D+
Sbjct: 335 ICDDDGNELPAGRIGTVYFERDRLP--FRYL-NDPEKTAAAQHPAHPFWTTVGDLGSVDE 391
Query: 638 DGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 697
DGY +L R +I G I E E+AL HP + AV+GV G+ + A + LV
Sbjct: 392 DGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLV 451
Query: 698 EGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
EG+ S+EL + L+ R +I + AP + + LP+T +GK+++ +LR
Sbjct: 452 EGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
|
Length = 501 |
| >gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 8e-25
Identities = 124/534 (23%), Positives = 208/534 (38%), Gaps = 71/534 (13%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TLTY++L +Q LA L +GV+ GD V + +A+ A ++GA ++
Sbjct: 72 RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNT 131
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
GFS LA+ K ++ + D++ A + + +
Sbjct: 132 GFSGPQLAEVAAREGVKALVYDD---------EFTDLLSALPPD-------LGRLRAW-- 173
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL--------FLLYTSGSTGK 401
++ + D D++ + PL ++ TSG+TG
Sbjct: 174 --GGNPDDDEPSGSTDETLDDLIAG----------SSTAPLPKPPKPGGIVILTSGTTGT 221
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKP---SDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKG P + A TG +++T L G++V
Sbjct: 222 PKGAPRPE----PSPLAPLAGLLSRVPFRAGETTLLPAPMFHATGWAHLTLAMAL-GSTV 276
Query: 459 VV---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
V+ F+ T D + K+K T P ++ ++ G E + +Y SL+++
Sbjct: 277 VLRRRFDPEATLED-------IAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
G ++P G + + TE F P + PG+ P GV
Sbjct: 330 VSGSALSPELATRALEAFGPVLY---NLYGSTEVA-FATIATPEDLAEAPGTVGRPPKGV 385
Query: 576 QPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635
I+DE G E+ G + + + +P T D + + G +GD
Sbjct: 386 TVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIID--------GLLSSGDVGYF 437
Query: 636 DKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVT 695
D+DG ++ GR DD+I G + AEVE L HP EAAV+GV+ E GQ + AFV
Sbjct: 438 DEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVV 497
Query: 696 LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749
G E+ K VR + + P + + LP+ +GK+++R LR++
Sbjct: 498 KAPGAALDEDAIKD---YVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548
|
Length = 549 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 100/371 (26%), Positives = 150/371 (40%), Gaps = 28/371 (7%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWIT 442
+D L+YTSG+TG+PKGV+HT M A YA DV + T
Sbjct: 195 GPDDVTQLIYTSGTTGEPKGVMHTANTLM---ANIVPYAERLGLGADDVILMASPMAHQT 251
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
G Y P++ GA+ V+ + D R+ +++ VT + + L R E
Sbjct: 252 GFMYGLMMPVMLGATAVLQD----IWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKE- 306
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ SLR G PI + +G W TE G +T
Sbjct: 307 -SGRPVSSLRTFLCAGAPIPGALVERARAALGAKIVS---AWGMTENGAVTLT-KLDDPD 361
Query: 563 QKPGSAT--FPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
++ S T P GV+ +VD G + G L ++ F + T
Sbjct: 362 ER-ASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRG--CSNFGGYLKRPQLNGTD-- 416
Query: 621 KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680
G++ TGD D DGY ++GR DVI G I E+E+ L HP A+ A+V
Sbjct: 417 --ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVA 474
Query: 681 VEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
E G+ AFV G EE+ + L +++ P+++ LP+T SG
Sbjct: 475 YPDERLGERACAFVVPRPGQSLDFEEMVEFL---KAQKVAKQYIPERLVVRDALPRTPSG 531
Query: 740 KIMRRILRKIA 750
KI + LR++
Sbjct: 532 KIQKFRLREML 542
|
Length = 547 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-24
Identities = 96/390 (24%), Positives = 151/390 (38%), Gaps = 66/390 (16%)
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA----DCGW 440
+DP +++YTSGSTGKPKGV+ T + + +P D A D
Sbjct: 97 SPDDPAYVIYTSGSTGKPKGVVITHRN-ICNFLRAEGAILGIRPGDRVLQFASIAFDVSI 155
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDI---VDKYKVTIFYTAPTLVRSLMR 497
+ + +L G ++V P+ R D+ +++ +VT+ + P+L+ L
Sbjct: 156 LE-----IFTTLLAGGTLV------IPPEELRLEDLAEFLNRLRVTVAHLTPSLLALL-- 202
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPS-AWRW-----FFNVVGDSRCPISDTWWQTETGG 551
SLR L GE + RW N G + ++ T
Sbjct: 203 ------DPEDVPSLRTLILGGEACPQALVDRWSKPRRLLNTYGPTEATVTATA------- 249
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLY 609
PG KP + P ++D + G G LCI PG R
Sbjct: 250 --SRLTPG----KPVNIGRPLPNYTCWVLDPDLEPLVPIGA-VGELCIGG--PGVARGYL 300
Query: 610 GDHERYETTYFK-PFPGY------YFTGDGCSRDKDG---YHWLTGRVDDVINVSGHRIG 659
E + PF Y TGD +DG + GR DD + + G RI
Sbjct: 301 NRPELTAEKFIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFL---GRKDDQVKIRGQRIE 357
Query: 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL--VEGVPYSEELRKSLVLAVRKQ 717
E+E+ L + P AAVV + + G+ + AF+ + G ++ L A+R++
Sbjct: 358 LGEIEAVLRALPGVVVAAVVLLLDDPGGKQLVAFLAVDGAAGGEPADVDIALLRSALRER 417
Query: 718 IGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ ++ P LP T SGK+ R+ LR
Sbjct: 418 LPSYMVPSVYVPLDELPLTASGKVDRKALR 447
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-24
Identities = 118/558 (21%), Positives = 198/558 (35%), Gaps = 109/558 (19%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+K+AI D LTY + VC++AN+L + K + I L +E
Sbjct: 16 NKIAIKEN------DRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENRIEFLQLFA 68
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + D L +R+ +++T L D+ D E
Sbjct: 69 GAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTE--------RYKLNDLPDE---EGR 117
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
I +D M + P Y V+ P ++ +T
Sbjct: 118 V--IEIDEW------KRMIEKYL--------------PTYAPIENVQ----NAPFYMGFT 151
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSYVTYGPM 452
SGSTGKPK L ++ H+ + F K D I G HS YG
Sbjct: 152 SGSTGKPKAFLRAQQSWL-HSFDCNVHDFHMKREDSVL-------IAGTLVHSLFLYG-- 201
Query: 453 LNGASVVVFEGAPTY------PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
A ++ G + P+ ++ +++ YT PT++ SL + R
Sbjct: 202 ---AISTLYVGQTVHLMRKFIPNQVLDK--LETENISVMYTVPTMLESLYK-----ENRV 251
Query: 507 SRKSLRVLGSVGE----------PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556
++++ S + I P A + F + F+
Sbjct: 252 IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEF--------------YGASELSFVTAL 297
Query: 557 LPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYE 616
+ ++P S PF VQ I +E G E++ G + +KS P F
Sbjct: 298 VDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS--PQFFMGYIIGGVLAR 355
Query: 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676
G+ D D++G+ ++ GR ++I G I E+ES L HP E
Sbjct: 356 EL---NADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEI 412
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
V+GV G+ V +++G ++L+ +++ +F P + H+ +P T
Sbjct: 413 VVIGVPDSYWGE---KPVAIIKGSATKQQLKS----FCLQRLSSFKIPKEWHFVDEIPYT 465
Query: 737 RSGKIMRRILRKIASRQL 754
SGKI R + Q
Sbjct: 466 NSGKIARMEAKSWIENQE 483
|
Length = 487 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-23
Identities = 130/561 (23%), Positives = 213/561 (37%), Gaps = 116/561 (20%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L + +LA+ L+ GV V I EL +A+LA + G + +
Sbjct: 2026 DQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLDP 2085
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ ++ LA + D +++T + +R P + L +
Sbjct: 2086 NYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGV-------------------ARLPLD 2126
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
RD W D YP + E+ +++YTSGSTG PKGV +
Sbjct: 2127 ---------------RDAEWAD----YPDTAPAVQLAGENLAYVIYTSGSTGLPKGVAVS 2167
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADC--------------GWITGHSYVTYGPMLN 454
G + H + Y+ S ADC W P+LN
Sbjct: 2168 HGALVAHCQAAGER---YELSP-----ADCELQFMSFSFDGAHEQWFH--------PLLN 2211
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKS 510
GA V++ + D + +D ++++ VTI P ++ L RDG +
Sbjct: 2212 GARVLIRDD--ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGR-------PPA 2262
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGS 567
+RV GE + ++ R + + + + + TE ++TPL W PQ P
Sbjct: 2263 VRVYCFGGEAVPAASLRLAWEALRPVY--LFNGYGPTEA---VVTPL--LWKCRPQDPCG 2315
Query: 568 ATFPFFGVQPV------IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
A + G + + I+D + +G L + G G R T +
Sbjct: 2316 AAYVPIG-RALGNRRAYILDADLNLLAPGMAGELYL-----GGEGLARGYLNRPGLTAER 2369
Query: 622 ----PFPG----YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673
PF Y TGD DG GR+D + + G RI E+E+ L +HP
Sbjct: 2370 FVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAV 2429
Query: 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733
EA VV + G+ + A+V +E+L L + ++ A+ P L
Sbjct: 2430 REAVVVAQD-GASGKQLVAYVV---PDDAAEDLLAELRAWLAARLPAYMVPAHWVVLERL 2485
Query: 734 PKTRSGKIMRRILRKIASRQL 754
P +GK+ R+ L K QL
Sbjct: 2486 PLNPNGKLDRKALPKPDVSQL 2506
|
Length = 5163 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-23
Identities = 98/438 (22%), Positives = 147/438 (33%), Gaps = 104/438 (23%)
Query: 371 VVPKYPT-----------KCEVEWV----DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
VP YPT V +D L+YTSG+TG PKGV+ T ++
Sbjct: 57 PVPIYPTSSPEEVAYILNDSGARVVFVEDKPDDLATLIYTSGTTGNPKGVMLTHRN-LLA 115
Query: 416 TATTFKYAFDYKPSDVY------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
A P D + Y P+ +GA V E T +
Sbjct: 116 QAAALLEVIPLSPGDRVLSFLPLA------HVFEQRLGEYLPLSSGARVNFAESPETLLE 169
Query: 470 SGRSWDIVDKYKVTIFYTAPTL-------VRSLMRDGNEYVTRYSRK---------SLRV 513
R + + T+F+ P + + + + RK LR
Sbjct: 170 DLR------EVRPTVFFAVPRVWEKIYAGIEAKVAAA----GPLKRKLFRWALGGGRLRF 219
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
S G P+ P FF +G PI + + TET G PG + G+ P
Sbjct: 220 AVSGGAPLPPEVLE-FFRALG---IPILEGYGLTETSGVATVNRPGDI--RIGTVGKPLP 273
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP--GYYFTGD 631
GV+ I + +GE + ++ P + Y + E G+ TGD
Sbjct: 274 GVEVRIAE------DGE----ILVRG--PNVMKGYYKNPEATAEA----LDEDGWLHTGD 317
Query: 632 GCSRDKDGYHWLTGRVDDVI-NVSGHRIGTAEVESALVSHPQCAEAAVVG---------- 680
D+DG+ +T R D+I G I +E+AL + P ++A VVG
Sbjct: 318 IGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENALKASPYISQAVVVGDDRPYLTALI 377
Query: 681 ------VEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRK------QIGAFAAPDK 726
+E + G+ F T + P L + V QI F K
Sbjct: 378 VLDPEALEKWAEQHGL-PFTTYADLAEDPEVRALIRKEVEEANARLARVEQIKKFVLLPK 436
Query: 727 IHWAPGLPKTRSGKIMRR 744
T + K+ RR
Sbjct: 437 EFSIEDGELTPTMKLRRR 454
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-23
Identities = 123/534 (23%), Positives = 215/534 (40%), Gaps = 82/534 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D ++Y++ Q++ Q A L G+ +GD V + + A + +GAV +
Sbjct: 25 DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLGAVFLPINY 84
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
++D +A + D K+++ K ++DAA
Sbjct: 85 RLAADEVAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAAA------------------ 126
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-LLYTSGSTGKPKGVLHT 408
Q+ R Q G +I P+ A L L+YTSG+T +PKGV+H+
Sbjct: 127 QADSRRLA---QGGLEI-----PPQAAV--------APTDLVRLMYTSGTTDRPKGVMHS 170
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTAD----CGWITGHSYVTYGPM-------LNGAS 457
G +++W + D G + GP+ L G +
Sbjct: 171 YG-------------------NLHWKSIDHVIALGLTASERLLVVGPLYHVGAFDLPGIA 211
Query: 458 VVVFEGAPTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
V+ G D ++++++T + AP ++ ++ + R+ SL
Sbjct: 212 VLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRD--RFDLDSLAWC 269
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574
GE S R F V +R D + TET G +K GS
Sbjct: 270 IGGGEKTPESRIRDFTRVFTRAR--YIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAH 327
Query: 575 VQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS 634
V+ I D G + G +C++ P + + D E+ ++ ++ +GD
Sbjct: 328 VEIRIADGAGRWLPPNMKGEICMRG--PKVTKGYWKDPEKTAEAFYG---DWFRSGDVGY 382
Query: 635 RDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 694
D++G+ +LT R D+I G I ++EVE + P+ AEAAV+GV + G+ I A V
Sbjct: 383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVV 442
Query: 695 TLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
L G + E L + R+++ +F P ++ LP+ SGK+++R+LR
Sbjct: 443 VLNPGATLTLEALDRH----CRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLR 492
|
Length = 497 |
| >gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 5e-23
Identities = 123/550 (22%), Positives = 199/550 (36%), Gaps = 92/550 (16%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D ++ +L Q+ + A L +GV+ GD V + + A A R+GA V
Sbjct: 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNW 68
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--------ECAKS-GIS 340
F + +A + D +V+I + G L + A + E A + IS
Sbjct: 69 HFKPEEIAYILEDSGARVLIAHADLLHG-----LASALPAGVTVLSVPTPPEIAAAYRIS 123
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+ A+ E W ++ + VP+ P ++YTSG+TG
Sbjct: 124 PALLTP--PAGAIDWE--GWLAQQEPYDGPPVPQ--------------PQSMIYTSGTTG 165
Query: 401 KPKGVLHT--TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGA-- 456
PKGV T + KP T GP+ + A
Sbjct: 166 HPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLT--------------GPLYHSAPN 211
Query: 457 ----------SVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
V+V + P + D +++++++T + PT+ L++ E +Y
Sbjct: 212 AYGLRAGRLGGVLVLQ--PRF-DPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268
Query: 507 SRKSLRVLGSVGEPINPSAWR----WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
SLR + P R W+ V I + + TE+G +
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPV-------IYEYYGSTESGA-VTFATSEDAL 320
Query: 563 QKPGSATFPFFGVQPVIVDEKGVEIE----GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
PG+ G + VDE G + GE I S G Y +
Sbjct: 321 SHPGTVGKAAPGAELRFVDEDGRPLPQGEIGE------IYSRIAGNPDFTYHNKPEKRAE 374
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
+ G+ +GD D DGY +L R D++ G I AE+E+ L + P + AV
Sbjct: 375 IDRG--GFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAV 432
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
G+ G+ + A V G E +R L + ++ + P I LP+
Sbjct: 433 FGIPDAEFGEALMAVVEPQPGATLDEADIRAQL----KARLAGYKVPKHIEIMAELPRED 488
Query: 738 SGKIMRRILR 747
SGKI +R LR
Sbjct: 489 SGKIFKRRLR 498
|
Length = 509 |
| >gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 6e-23
Identities = 136/530 (25%), Positives = 211/530 (39%), Gaps = 62/530 (11%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
T T+ +L +V LA L GV GD V+I + E ++LA +GA+ V
Sbjct: 41 NTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLAANMLGAIAVPVNFR 100
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ +A + DC VV+T A+ P A ++DIV G S D L YE+
Sbjct: 101 LTPPEIAFLVSDCGAHVVVTEAAL--APVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDL 158
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED-PLFLLYTSGSTGKPKG-VL-H 407
A + G D+ D P ++YTSG+TG+PKG VL H
Sbjct: 159 LA--------EAGPAHAPVDI--------------PNDSPALIMYTSGTTGRPKGAVLTH 196
Query: 408 TTGGYMVHTATTFKYAFDY-KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
+ A T SDV + I G + G +L GAPT
Sbjct: 197 AN---LTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLPGLLL---------GAPT 244
Query: 467 --YP----DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
YP D G+ D+++ KVT + P +++ + R +LRVL P
Sbjct: 245 VIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQ---ARPRDLALRVLSWGAAP 301
Query: 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580
+ + R +++ I + QTE L +K GS V +V
Sbjct: 302 ASDTLLRQMAATFPEAQ--ILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVV 359
Query: 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF-TGDGCSRDKDG 639
DE ++ G + ++ TL + + F G +F +GD +D++G
Sbjct: 360 DENMNDVPVGEVGEIVYRAP------TLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEG 413
Query: 640 YHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG 699
Y W+ R D+I G I AEVE+ L SHP E AV+G E G+ A +
Sbjct: 414 YVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRND 473
Query: 700 VPYSEELR-KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
L + L + ++ + P + LP+ +GK+++ LR+
Sbjct: 474 ---DAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRE 520
|
Length = 542 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 8e-23
Identities = 101/390 (25%), Positives = 140/390 (35%), Gaps = 61/390 (15%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHT-----ATTFKYAFDYKPSDVYWCTADCGWIT 442
DP F +YTSG+TG PK + M H F KP DV +
Sbjct: 82 DPAFYIYTSGTTGLPKAAI------MSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSN 135
Query: 443 GHSYVTYGPML-NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR---- 497
V + L GAS+ + + S + W V +Y T F L R L+
Sbjct: 136 A-LTVGWSSALAAGASLAL---RRKFSAS-QFWPDVRRYGATAFQYVGELCRYLLNQPEK 190
Query: 498 --DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMIT 555
D + + + LR P W F G R I + + TE G
Sbjct: 191 PDDRDHPLRKIIGNGLR----------PDIWDEFKERFGVPR--IVEFYGSTE-GNVGFI 237
Query: 556 PLPGAWPQKPGSATF-PFFGVQPVIVDEKGVEI----EGEC-------SGYLCIKSSWPG 603
L KPG+ P + V D + E G C G L + +
Sbjct: 238 NLFN----KPGAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRN 293
Query: 604 AFRTLYGDHERYE----TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
F Y D E E FK Y+ TGD RD GY + R+ D G +
Sbjct: 294 PF-DGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVS 352
Query: 660 TAEVESALVSHPQCAEAAVVGVE-HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 718
T EVE L HP EA V GVE +G+ A +TL G + ++ + +Q+
Sbjct: 353 TTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAFDP---QAFAAHLDEQL 409
Query: 719 GAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
A+A P + + T + K + LRK
Sbjct: 410 PAYARPLFLRVQAAMETTGTFKYQKTDLRK 439
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-22
Identities = 143/620 (23%), Positives = 229/620 (36%), Gaps = 142/620 (22%)
Query: 208 RNIEAGLGDKVAIYWEA-----NDPGVD---ATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
+++ G V +Y A + P +D AT TY++L +QV + A L+ +GV+ GD
Sbjct: 25 HDLDYGDTTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDR 84
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRG 317
V I LP + +A A R+GAV VV +++ L D +V I + K
Sbjct: 85 VAIVLPNCPQHIVAFYAVLRLGAV--VVEHNPLYTAHELEHPFEDHGARVAIVWD--KVA 140
Query: 318 PKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW---------QDGRD--- 365
P L+ L+ +SV++ +AM + + R
Sbjct: 141 PTVERLRR--TTPLETI----VSVNMI------AAMPLL-QRLALRLPIPALRKARAALT 187
Query: 366 ------IWWQDVV----PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ W+ +V + +D +LYTSG+TGKPKG T +
Sbjct: 188 GPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFAN 247
Query: 416 TATTFKYAFDYKPSDVYWCTADCG--WITG---------------HSY-----VTYGPML 453
A G W+ G H+Y +T +
Sbjct: 248 AAQ--------------------GKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSI 287
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
G +V+ P PD D + K+ T P L + E +R
Sbjct: 288 -GGELVLL---PA-PDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEE--RGVDLSGVR- 339
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDT-WWQTETGGFMI--------TPLPGAWP-- 562
G P+S W+ TGG ++ +P+ P
Sbjct: 340 ----------------NAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMS 383
Query: 563 --QKPGSATFPFFGVQPVIVDEKGVEIE---GECSGYLCIKSSWPGAFRTLYGDHERYET 617
++PG PF + IVD + + GE G L ++ P F+ G R E
Sbjct: 384 DDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGE-EGELLVRG--PQVFK---GYWNRPEE 437
Query: 618 TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
T G++ TGD ++DG+ + R+ ++I G + AEVE L HP +AA
Sbjct: 438 TAKSFLDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAA 497
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
VVG+ E + + A V L G E LR R+ + + P + + LP+
Sbjct: 498 VVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYC----REHLTRYKVPRRFYHVDELPRD 553
Query: 737 RSGKIMRRILRKIASRQLDE 756
+ GK+ RR +R+ +L
Sbjct: 554 QLGKVRRREVREELLEKLGA 573
|
Length = 573 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 130/552 (23%), Positives = 216/552 (39%), Gaps = 90/552 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
LTY++L ++ +LA+ L GV V I + E+ + +LA + G + + +
Sbjct: 4576 KLTYAELNRRANRLAHALIARGVGPEVLVGIAMERSAEMMVGLLAVLKAGGAYVPLDPEY 4635
Query: 292 SSDSLAQRIMDCKPKVVIT-SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
+ LA + D +++T S+ ++R P G++ L +
Sbjct: 4636 PRERLAYMMEDSGAALLLTQSHLLQRLPIP----------------DGLA---SLALD-- 4674
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
RD W+ +P + ++ +++YTSGSTG+PKGV + G
Sbjct: 4675 -------------RDEDWEG----FPAHDPAVRLHPDNLAYVIYTSGSTGRPKGVAVSHG 4717
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEG 463
+ H T + Y T D + S+ Y P++NGASVV+
Sbjct: 4718 SLVNHLHAT---------GERYELTPDDRVLQFMSFSFDGSHEGLYHPLINGASVVI--R 4766
Query: 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523
+ D R + + +++VT+ P ++ L SLRV GE +
Sbjct: 4767 DDSLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAER---DGEPPSLRVYCFGGEAVAQ 4823
Query: 524 S----AWR-----WFFNVVGDSRCPISDTWWQTETG---GFMITPLPGAWPQKPGSATFP 571
+ AWR + FN G + ++ W+ G G P+ + G
Sbjct: 4824 ASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIGTPLGNRSGYVLDG 4883
Query: 572 FFGVQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF-KPFPGYYFT 629
PV + E + EG GYL P ER+ F P Y T
Sbjct: 4884 QLNPLPVGVAGELYLGGEGVARGYL----ERPAL------TAERFVPDPFGAPGGRLYRT 4933
Query: 630 GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 689
GD DG GRVD + + G RI E+E+ L HP EA V+ E V G+
Sbjct: 4934 GDLARYRADGVIDYLGRVDHQVKIRGFRIELGEIEARLREHPAVREAVVIAQEGAV-GKQ 4992
Query: 690 IYAFVT-----LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744
+ +V L + ELR L A+R+++ + P + + +P T +GK+ R+
Sbjct: 4993 LVGYVVPQDPALADADEAQAELRDELKAALRERLPEYMVPAHLVFLARMPLTPNGKLDRK 5052
Query: 745 ILRKIASRQLDE 756
L + + L +
Sbjct: 5053 ALPQPDASLLQQ 5064
|
Length = 5163 |
| >gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-22
Identities = 130/549 (23%), Positives = 198/549 (36%), Gaps = 96/549 (17%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+LTY +LL L+ +K + K+G+ + I LP + +A LA G V V F
Sbjct: 7 SLTYRKLLTASLALSRLIKKL-TKEGENIGIMLPSSVAGALANLALLLAGKV--PVMLNF 63
Query: 292 --SSDSLAQRIMDCKPKVVITSNA------------VKRGPKAIHLKDIVDAALDECAKS 337
+ L K VITS A + G + ++L+D+ ++
Sbjct: 64 TAGEEGLRSACKQAGIKTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDL---------RA 114
Query: 338 GIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTS 396
IS D + +A +DP +L+TS
Sbjct: 115 KISKADKLKAF--LAAKLPPALLR--------------LFLAG----AKPDDPAVILFTS 154
Query: 397 GSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG-----HSY----V 447
GS G PKGV+ + + D DV + G H++
Sbjct: 155 GSEGLPKGVVLSHRNLL-ANIDQIAAVIDLNTEDV---------LLGALPLFHAFGLTVT 204
Query: 448 TYGPMLNGASVVVFEGAPTYPD--SGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
P+L G VV YP+ + +++ YK TI PT +R R
Sbjct: 205 LLLPLLTGLRVV------YYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR----NAH 254
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
SLR++ + E + + F G I + + TE + P K
Sbjct: 255 PEDFSSLRLVVAGAEKLPEATRELFEEKFG---IRILEGYGATECSPVISVNTPMG--NK 309
Query: 565 PGSATFPFFGVQPVIVDEKGVE--IEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP 622
PG+ P G++ IV + E GE G L ++ P + E+
Sbjct: 310 PGTVGRPLPGIEVRIVSPETHEELPIGE-GGLLLVRG--PNVMSGYLNNEEKTSEVE-VL 365
Query: 623 FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH-PQCAEAAVVGV 681
G+Y TGD D+DG+ + GR+ + G + VE L P+ + A V V
Sbjct: 366 GDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLTAVEELLSEILPEDSLHAAVEV 425
Query: 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
E KG+ I T + P EEL L A + A P KI +P SGK
Sbjct: 426 PDEKKGEKIVLLTTTEDLDP--EELNAILREA---GLPNLAVPRKILHVDEIPLLGSGKT 480
Query: 742 MRRILRKIA 750
R L+K+A
Sbjct: 481 DYRGLKKLA 489
|
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-22
Identities = 118/580 (20%), Positives = 200/580 (34%), Gaps = 121/580 (20%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++L ++ +LA+ L IGV V + + +E+ +A+LA + G + +
Sbjct: 3118 DQQLSYAELNRRANRLAHRLIAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDP 3177
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
+ + LA I D K+++T + ++ P + LD
Sbjct: 3178 EYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG------------- 3224
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
Y V E+ +++YTSGSTGKPKGV
Sbjct: 3225 --------------------------YSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVR 3258
Query: 409 TGGYMVH----------TATT-----FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
G H A ++FD W ++
Sbjct: 3259 HGALANHLCWIAEAYELDANDRVLLFMSFSFDGAQERFLW-----------------TLI 3301
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
G +VV + P+ W + ++++I P ++ D SL +
Sbjct: 3302 CGGCLVVRDNDLWDPE--ELWQAIHAHRISIACFPPAYLQQFAEDAG----GADCASLDI 3355
Query: 514 LGSVGEPINPSAW---------RWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP-- 562
GE + P+A+ R N G + ++ T W+ P
Sbjct: 3356 YVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDA---VCEAPYAPIG 3412
Query: 563 -QKPGSATFPFFG-VQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY 619
G + + G + PV V G + I G G + ER+
Sbjct: 3413 RPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLAR--------GYHQRPSLTAERFVAD- 3463
Query: 620 FKPFPG----YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
PF G Y TGD DG GR+D + + G RI E+E+ L+ HP E
Sbjct: 3464 --PFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVRE 3521
Query: 676 AAVVGVEHEVKGQGIYAFVTL-VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 734
A V+ + G+ + A+V + E LR L + + P ++ +P
Sbjct: 3522 AVVLARDGA-GGKQLVAYVVPADPQGDWRETLRDHL----AASLPDYMVPAQLLVLAAMP 3576
Query: 735 KTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
+GK+ R+ L ++ E +A V+Q +A
Sbjct: 3577 LGPNGKVDRKALPDPDAKGSREY-----VAPRSEVEQQLA 3611
|
Length = 3956 |
| >gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-22
Identities = 108/416 (25%), Positives = 158/416 (37%), Gaps = 94/416 (22%)
Query: 382 EWVDAEDPLF------------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKP 428
EW+ D F + YTSG+TG PKGVL++ ++H A
Sbjct: 160 EWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSA 219
Query: 429 SDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
+D W A G V G L+GASV ++++
Sbjct: 220 ADTMLPVVPLFHANSWGIAFSAPSMGTKLVMPGAKLDGASV---------------YELL 264
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D KVT PT+ L+ +Y+ + L L V V G S
Sbjct: 265 DTEKVTFTAGVPTVWLMLL----QYMEK-EGLKLPHLKMV--------------VCGGSA 305
Query: 538 CPIS-------------DTWWQTETGGF-MITPLPGAWPQKPGSAT--------FPFFGV 575
P S W TE + L + + PG A +P FGV
Sbjct: 306 MPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGV 365
Query: 576 QPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ I D+ G E+ +G+ G L K P Y R + G++ TGD
Sbjct: 366 EMKITDDAGKELPWDGKTFGRL--KVRGPAVAAAYY----RVDGEILDD-DGFFDTGDVA 418
Query: 634 SRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 693
+ D GY +T R DVI G I + ++E+ V HP+ AEAAV+GV H +
Sbjct: 419 TIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLI 478
Query: 694 VTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
V L G EE+ K + +I + PD + + +P T +GKI++ LR+
Sbjct: 479 VQLKPGETATREEILKYM----DGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530
|
Length = 542 |
| >gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 8e-22
Identities = 135/560 (24%), Positives = 207/560 (36%), Gaps = 89/560 (15%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
T+ QL V +LA L +GV+ GD V I+ P E + A ARIGA+ + +
Sbjct: 46 YTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYR 105
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVC-------- 344
+ L + + VI ++A K ++ L A+ C
Sbjct: 106 ASELEYALGQSGVRWVICADAFK----TSDYHAMLQELLPGLAEGQPGALACERLPELRG 161
Query: 345 ---LTYENQSAMTRENTKWQD----GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSG 397
L W + G + + + + + +D +DP+ + YTSG
Sbjct: 162 VVSLAPAPPPGFL----AWHELQARGETVSREALAERQAS------LDRDDPINIQYTSG 211
Query: 398 STGKPKGVLHT-----TGGYMVHTATTFKYAFDY--KPSDVYWCTADCGWITGHSYVTYG 450
+TG PKG + GY V + D P +Y C G G
Sbjct: 212 TTGFPKGATLSHHNILNNGYFVAESLGLTEH-DRLCVPVPLYHCF-------GMVLANLG 263
Query: 451 PMLNGASVVVFEGAPTYP----DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506
M GA +V YP D + V++ + T Y PT+ + + D + +
Sbjct: 264 CMTVGACLV-------YPNEAFDPLATLQAVEEERCTALYGVPTMFIAEL-DHPQR-GNF 314
Query: 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP-ISDTWWQTETGGFMITPLPGAWPQKP 565
SLR G P R V+ + + + TET ++ A
Sbjct: 315 DLSSLRTGIMAGAPCPIEVMR---RVMDEMHMAEVQIAYGMTETSP--VSLQTTAADDLE 369
Query: 566 GSATFPFFGVQP----VIVDEKGVEI----EGE-CS-GYLCIKSSWPGAFRTLYGDHERY 615
QP +VD G + GE C+ GY +K W T E
Sbjct: 370 RRVE-TVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDED- 427
Query: 616 ETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
G+ TGD + D+ GY + GR D+I G I E+E L +HP A+
Sbjct: 428 ---------GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVAD 478
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 734
V GV E G+ I A+V L G S EELR+ + +I F P + P
Sbjct: 479 VQVFGVPDEKYGEEIVAWVRLHPGHAASEEELRE----FCKARIAHFKVPRYFRFVDEFP 534
Query: 735 KTRSGKIMRRILRKIASRQL 754
T +GK+ + +R+I+ +L
Sbjct: 535 MTVTGKVQKFRMREISIEEL 554
|
Length = 558 |
| >gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 1e-21
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 16/191 (8%)
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETT- 618
++PG P GV+ +VDE G + +GE G L ++ P F G R + T
Sbjct: 289 ERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRG--PTLFD---GYLNRPDATA 343
Query: 619 -YFKPFPGYYFTGDGCSRDKDGYHWLTGRVD-DVINVSGHRIGTAEVESALVSHPQCAEA 676
F G++ TGD D DG H + GR D+I G+RIG E+E+AL+ HP EA
Sbjct: 344 AAFTA-DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREA 402
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
AVVGV + GQ I A+V + V E L+ V +Q+ P ++ + LP+
Sbjct: 403 AVVGVPDDDLGQRIVAYVVGADDVAADE-----LIDFVAQQLSVHKRPREVRFVDALPRN 457
Query: 737 RSGKIMRRILR 747
GK++++ L
Sbjct: 458 AMGKVLKKQLL 468
|
Length = 471 |
| >gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL) | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 2e-21
Identities = 127/547 (23%), Positives = 190/547 (34%), Gaps = 91/547 (16%)
Query: 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281
DP LTYS+L +V +A L GV+ V + P ++ IA+LA R+G
Sbjct: 18 CALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLG 77
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
AV + +M+ + K + +KRG + I A A
Sbjct: 78 AVPA--------------LMNPRLKPAEIAELIKRG--EMTAAVIAVDAQVMDAIFQSGS 121
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
V + E P E E P F+ YTSG+TG
Sbjct: 122 GVRVLALGDLVGLGEP----------ESAGPPIEDPPRE-----PEQPAFVFYTSGTTGL 166
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM--------- 452
PKG + + A S V + + G G V G M
Sbjct: 167 PKGAV------IPQRAAE---------SRVLFMSTQAGLRHGRHNVVLGLMPLYHVIGFF 211
Query: 453 --------LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
L+G VVV E P + ++++ +VT + PT + +L
Sbjct: 212 AVLVAALALDGTYVVVEEFDP-----ADALKLIEQERVTSLFATPTHLDALA--AAAEGA 264
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
SL + G + + + + + TE + P +
Sbjct: 265 PLKLDSLEHVTFAGATMPDAVLERVNQHL---PGEKVNIYGTTEAMNSLYMRDP-----R 316
Query: 565 PGSATFP-FFG-VQPVIVDEKGVEI--EGECSGYLCIK-SSWPGAFRTLYGDHERYETTY 619
G+ P FF V+ V + E GE G L + + T G + + T
Sbjct: 317 TGTEMRPGFFSEVRIVRIGGSPDEALPNGE-EGELVVAAADA-----TFTGYLNQPQATA 370
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679
K G+Y T D D G + GRVDD+I G I +EVE L P E V+
Sbjct: 371 EKLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVI 430
Query: 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG 739
G+ E GQ + A V EG S + + A ++ F P + + LPK
Sbjct: 431 GLPDERWGQSVTACVVPREGETLSADALDTFCRA--SELADFKRPRRYFFLDELPKNAMN 488
Query: 740 KIMRRIL 746
K++RR L
Sbjct: 489 KVLRRQL 495
|
CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 1e-20
Identities = 113/402 (28%), Positives = 150/402 (37%), Gaps = 92/402 (22%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV-HTA-TTFKYAFDYKPSDVYWCTADCGWI 441
D +D +++YTSGSTGKPKGV V H A F + +P A +
Sbjct: 90 TDPDDLAYVIYTSGSTGKPKGV-------EVSHRALVNFLLSMARRPG----LGASDRLL 138
Query: 442 TGHSYVT-----------YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
VT P+L+GA+VV+ A T D R ++ ++TI P
Sbjct: 139 A----VTTISFDISVLELLLPLLSGATVVI-ASAETVRDPERLARLIADERITIMQATPA 193
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP-----------SAWRWFFNVVGDSRCP 539
R L+ G R+SL L GE + W N+ G P
Sbjct: 194 TWRMLLAAGWR-----GRESLTAL-CGGEALPRDLAERLLSTGAELW----NMYG----P 239
Query: 540 ISDTWWQTETGGFMITPLPGAWPQKP-GSATFPFFGVQPVIVDEKG--VEIEGECSGYLC 596
T W T + A G P Q ++DE V G G L
Sbjct: 240 TETTIWST------CARVTAADGPVTIGR---PIANTQVYVLDEDLQPVPP-GVP-GELY 288
Query: 597 IKSSWPGAFRTLYGDHERYETTYFK----PFPG----YYFTGDGCSRDKDG---YHWLTG 645
I G R G R E T + PF Y TGD DG Y G
Sbjct: 289 IGG--DGVAR---GYLGRPELTAERFVPDPFDDPGGRLYRTGDLVRWRPDGRLEYL---G 340
Query: 646 RVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-E 704
R DD + + G RI E+E+AL +HP A+A VV E Q + A+V G E
Sbjct: 341 RADDQVKIRGFRIELGEIEAALRAHPGVADAVVVVREEGPGDQRLVAYVVPKAGAAPDAE 400
Query: 705 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
LR +L R + A+ P LP T +GK+ R+ L
Sbjct: 401 ALRAAL----RATLPAYMVPAAFVQLDELPLTPNGKVDRKAL 438
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 8e-20
Identities = 121/553 (21%), Positives = 214/553 (38%), Gaps = 126/553 (22%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
TL Y++L ++ +LA+ L + GV V + + +E+ +A+LA + G + + +
Sbjct: 536 TLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPEY 595
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
++ LA + D +++++ + HL + A +G+ V + L
Sbjct: 596 PAERLAYMLEDSGVQLLLSQS---------HLGRKLPLA------AGVQV-LDL------ 633
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG- 410
D W + Y + ++ E+ +++YTSGSTGKPKG +
Sbjct: 634 ----------DRPAAW----LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRA 679
Query: 411 ----------------GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
G V T F +FD + +W P+++
Sbjct: 680 LSNRLCWMQQAYGLGVGDTVLQKTPF--SFDVSVWEFFW-----------------PLMS 720
Query: 455 GASVVVFEGAPTYPDSGRS----WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510
GA +VV A P R +++++ V + P+++++ ++D + S S
Sbjct: 721 GARLVV---AA--PGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA----SCTS 771
Query: 511 LRVLGSVGEPINPSAW------RW---FFNVVGDSRCPISDTWWQTETGGFMITPLPGAW 561
LR + GE + A +N+ G + I T W G P+ G
Sbjct: 772 LRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPI-GR- 829
Query: 562 PQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYG----DHERYET 617
P + I+D + G L + G R +G ER+
Sbjct: 830 ---------PIANLACYILDANLEPVPVGVLGELYLAGR--GLARGYHGRPGLTAERFVP 878
Query: 618 TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
+ F Y TGD DG GR+D + + G RI E+E+ L+ HP EAA
Sbjct: 879 SPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAA 938
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAVRKQIGAFAAPDKIHWAP--GL 733
V+ V+ G+ + +V V SE + R++L + + + P W L
Sbjct: 939 VLAVD----GKQLVGYV-----VLESEGGDWREALKAHLAASLPEYMVPA--QWLALERL 987
Query: 734 PKTRSGKIMRRIL 746
P T +GK+ R+ L
Sbjct: 988 PLTPNGKLDRKAL 1000
|
Length = 5163 |
| >gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-19
Identities = 111/507 (21%), Positives = 192/507 (37%), Gaps = 89/507 (17%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T++Q+ Q ++A L+ +G++ GD + I E IA LA G V ++ ++
Sbjct: 8 TWAQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMAGHVSVPLYPTLTA 67
Query: 294 DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD--ECAKSGISVDVCL-TYENQ 350
+++ + K + LD + K+G+ +
Sbjct: 68 ETIRYVLEHSDAKALFV------------------GKLDDWDAMKAGVPEGLPTIILFPY 109
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
S + W D++ + ED ++YTSG+TG+PKGV+ + G
Sbjct: 110 STLKDHYK---------WDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFG 160
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470
A P+D I V G + +GA V E T+
Sbjct: 161 A-FAFAAQGTIEIIGLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVFFVESLDTFAAD 219
Query: 471 GRSWDIVDKYKVTIFYTAPTL-------VRSLMRDG-----------NEYVTRYSRKSL- 511
+ + + T+F++ P L + + + + V + K L
Sbjct: 220 ------LQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLG 273
Query: 512 ----RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGS 567
R+ GS P+ P+ W+ + G PI + + TE + PG ++ G+
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYRKL-G---LPICEGYGMTENFAYSTLNYPGD--RRIGT 327
Query: 568 ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
P GV+ I ++ GE + I+S PG Y D E+ + + G+
Sbjct: 328 VGKPIPGVELKISED------GE----ILIRS--PGLMSGYYKDPEKTAEAFTED--GWL 373
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEHEVK 686
TGD D+DG+ +TGRV ++ S G + A +E+ L ++P + VVG
Sbjct: 374 HTGDKGEIDEDGFLKITGRVKELFKTSKGKYVAPAPIENLLSANPHVEQVCVVGS----- 428
Query: 687 GQG-IYAFVTLVEGVP--YSEELRKSL 710
G A V L E EE+ +SL
Sbjct: 429 GLPQPVALVVLSEAADPLEREEVEESL 455
|
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-19
Identities = 120/566 (21%), Positives = 213/566 (37%), Gaps = 122/566 (21%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY +L ++ +LA+ L +GV V I + +E+ + +LA + G + + +
Sbjct: 1600 LTYGELNRRANRLAHRLIALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYP 1659
Query: 293 SDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+ LA I D ++++T + + R P L+ +V D+
Sbjct: 1660 RERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQEDD------------------ 1701
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG 411
W +G + V + ++ +++YTSGSTG+PKG + G
Sbjct: 1702 --------WLEGYS----------DSNPAVN-LAPQNLAYVIYTSGSTGRPKGAGNRHGA 1742
Query: 412 YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------TYGPMLNGASVVVFEGA 464
+ T + A+ +DV + S+ + P++NGA +V+ A
Sbjct: 1743 LVNRLCAT-QEAYQLSAADV--------VLQFTSFAFDVSVWELFWPLINGARLVI---A 1790
Query: 465 P--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR-KSLRVLGSVGEPI 521
P + D + ++++ +VT + P++++ L+ + + SLR + GE +
Sbjct: 1791 PPGAHRDPEQLIQLIERQQVTTLHFVPSMLQQLL----QMDEQVEHPLSLRRVVCGGEAL 1846
Query: 522 NPSAWR-WF--------FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF 572
A R W FN+ G + + T W + G + P
Sbjct: 1847 EVEALRPWLERLPDTGLFNLYGPTETAVDVTHW----------TCRRKDLE--GRDSVPI 1894
Query: 573 FGVQPVIVDEKGVEIEGECSGYLCIKSSWP---GAFRTLY--------GDHERYETTYFK 621
G I S Y+ S P G LY G R T +
Sbjct: 1895 -----------GQPI-ANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAER 1942
Query: 622 ----PF--PG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673
PF G Y TGD DG GR+D + + G RI E+E+ L
Sbjct: 1943 FVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGV 2002
Query: 674 AEAAVVGVEHEVKGQGIYAFVT-----LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
EA V+ + G+ + A+V LV+ LR L ++ + + P +
Sbjct: 2003 REAVVIAQDGA-NGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPAHLV 2061
Query: 729 WAPGLPKTRSGKIMRRILRKIASRQL 754
+ +P T +GK+ R+ L + +L
Sbjct: 2062 FLARMPLTPNGKLDRKALPAPDASEL 2087
|
Length = 3956 |
| >gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Score = 91.2 bits (226), Expect = 4e-19
Identities = 143/535 (26%), Positives = 211/535 (39%), Gaps = 54/535 (10%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVV 287
D +TY++L A L G K +V +YL + PI + GA VH
Sbjct: 44 DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSP 103
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTY 347
G +L+ ++ D +++ITS+ P A LK + LD VC
Sbjct: 104 LDG--ERALSHKLSDSGARLLITSDLAALLPMA--LKFLEKGLLDRLI-------VCEDD 152
Query: 348 ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH 407
T + D R + + D V E V +D L YT G+TG PKG +
Sbjct: 153 NWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAML 212
Query: 408 TTGGYMVHTATTFKYAFDYKPS-----DVY--WCTADCGWITGHSYVTYGPMLNGASVVV 460
T G T+ Y KPS DV C I + + + G + +
Sbjct: 213 THGNL---TSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISL 269
Query: 461 ---FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517
F+ A + D +++ + T+F PT+ +L D + + + SL +GS
Sbjct: 270 HQRFDVAAVFRD-------IEEKRATVFPGVPTMWIALANDPS--LEKRDLSSLATIGSG 320
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP 577
G P+ +F G + W TET T P P KPGS G++
Sbjct: 321 GAPLPVEVANFFERKTGLK---LKSGWGMTETCS-PGTGHPPEGPDKPGSIGLMLPGIEL 376
Query: 578 VIV---DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCS 634
+V D V GE G L I+ P R G R E + + TGD
Sbjct: 377 DVVSLDDPTKVLPPGEV-GELRIRG--PNVTR---GYWNRPEESAEAFVGDRFLTGDIGY 430
Query: 635 RDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFV 694
D DGY +L R D+I G + +E A+ HP E V+G+ + +G+ AFV
Sbjct: 431 MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFV 490
Query: 695 TLVEGV-PYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
L G P+S +ELR L ++G P + + LP+T GK+ R LR
Sbjct: 491 KLRPGAKPFSLDELRAFL----AGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541 |
| >gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 5e-19
Identities = 98/396 (24%), Positives = 148/396 (37%), Gaps = 72/396 (18%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD------ 437
D +D L++TSG++G PK V T + F P DV + +
Sbjct: 149 ADPDDLFMLIFTSGTSGDPKAVR-CTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNA 207
Query: 438 --CGWITGHSYVTYGPMLNGASVVV---FEGAPTYPDSGRSWDIVDKYKVTIF------- 485
GW + GAS+ + F + PD V +Y T
Sbjct: 208 VMAGWAVA--------LAAGASIALRRKFSASGFLPD-------VRRYGATYANYVGKPL 252
Query: 486 -YTAPTLVRSLMRDGNEYVTRYSRKSLRVL-GSVGEPINPSAWRWFFNVVGDSRCPISDT 543
Y T R D LR++ G+ G P + + + F C + D
Sbjct: 253 SYVLATPERPDDAD----------NPLRIVYGNEGAPGDIARFARRFG------CVVVDG 296
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ-----------PVIVDEKGVEIEGECS 592
+ TE GG IT P PG+ GV P + + E
Sbjct: 297 FGSTE-GGVAITRTPDT---PPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAI 352
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G L + ++ PG F Y D E + G Y++GD RD DGY + GR+ D +
Sbjct: 353 GEL-VNTAGPGGFEGYYNDPE---ADAERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMR 408
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
V G +GTA +E L+ +P E AV V V G + A + L G + + + L
Sbjct: 409 VDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPD-AFAEFL 467
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
A + +G P + LP+T + K+++R L
Sbjct: 468 AAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSA 503
|
Length = 529 |
| >gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-18
Identities = 126/568 (22%), Positives = 205/568 (36%), Gaps = 102/568 (17%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVII-------YLPMLMELPIAMLACARIGAVHS 285
T + + V LA L +G++ GD V I YL +LA A G + +
Sbjct: 33 RTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEW-------LLAVACAGGIVA 85
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-----DECAKSGIS 340
+ +S + ++ +P +++T + + + + I
Sbjct: 86 PLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIF 145
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
++ LT E + + + W +D + + +TSG+TG
Sbjct: 146 LNSFLTTEM----------------LKQRALGTTELDYA---WA-PDDAVLICFTSGTTG 185
Query: 401 KPKGVLHTTGGYMVHTATTF----KYAF-DYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
+PKGV + H+A K A Y DVY TA I G S M+
Sbjct: 186 RPKGVTIS------HSALIVQSLAKIAIVGYGEDDVYLHTAPLCHIGGLSSALAMLMVGA 239
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL- 514
V++ P + D+ + + ++ VT T P ++ L+ + +T S+R +
Sbjct: 240 CHVLL----PKF-DAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKIL 294
Query: 515 ---GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG---FMITPLPGAWPQKPGSA 568
GS+ + P A + F + + TE FM L + P
Sbjct: 295 NGGGSLSSRLLPDAKKLF------PNAKLFSAYGMTEACSSLTFM--TLHDPTLESPKQT 346
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSG----YLCIKSSWPGAFRT----LYGDH--ERY--- 615
+ V + G C G ++ +K + R G H Y
Sbjct: 347 LQTVNQTKSSSVHQPQ----GVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQ 402
Query: 616 --ETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673
ET G+ TGD DK G WL GR +D I G + EVE+ L HP
Sbjct: 403 NSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGV 462
Query: 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----EELRKSLVLA-------VRKQ-IGAF 721
A VVGV + + A V L +G +S E +K+L L+ R++ + F
Sbjct: 463 ASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRF 522
Query: 722 AAPDKI-HWAPGLPKTRSGKIMRRILRK 748
P W P T +GKI R +R+
Sbjct: 523 KIPKLFVQWRKPFPLTTTGKIRRDEVRR 550
|
Length = 563 |
| >gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 90.5 bits (224), Expect = 1e-18
Identities = 123/576 (21%), Positives = 210/576 (36%), Gaps = 87/576 (15%)
Query: 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPM 266
++ EAG D+ A Y V +T+ Q+ +L L++ G+ GD V++ LP
Sbjct: 12 EQASEAGWYDRPAFY----AADV---VTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPD 64
Query: 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
+L +LAC G + + D A + +P +V+TS+A++ +
Sbjct: 65 SPDLVQLLLACLARGVMAFLANPELHRDDHALAARNTEPALVVTSDALR---DRFQPSRV 121
Query: 327 VDAA--LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
+AA + E A+ E +
Sbjct: 122 AEAAELMSEAARVAPG---------------------------------------GYEPM 142
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444
+ + YTSG+TG PK +H + + A P D C+A + G
Sbjct: 143 GGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMYFAYGL 202
Query: 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504
+ P+ G S V+ AP P++ + ++ ++ Y P ++ + +
Sbjct: 203 GNSVWFPLATGGSAVI-NSAPVTPEAAAI--LSARFGPSVLYGVPNFFARVI----DSCS 255
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
S +SLR + S GE + G PI D TE G ++ W +
Sbjct: 256 PDSFRSLRCVVSAGEALELGLAERLMEFFGG--IPILDGIGSTEVGQTFVSNRVDEW--R 311
Query: 565 PGS--ATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF-K 621
G+ P + ++ V D G +G PG L+ Y+ +
Sbjct: 312 LGTLGRVLPPYEIRVVAPD-------GTTAG--------PGVEGDLWVRGPAIAKGYWNR 356
Query: 622 PFP-----GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676
P G+ T D D DG+ R DD + G + EVE ++ AEA
Sbjct: 357 PDSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEA 416
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
AVV V + AF+ G + + L + ++ AF P + LP+T
Sbjct: 417 AVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRT 476
Query: 737 RSGKIMRRILR-KIASRQLDELGDTSTLAD-PGVVD 770
+GK++R LR + ++ + EL T + D
Sbjct: 477 PNGKLVRGALRKQSPTKPIWELSLTEPGSGVRAQRD 512
|
Length = 705 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-18
Identities = 64/292 (21%), Positives = 103/292 (35%), Gaps = 51/292 (17%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ + D TY + + +LA+ L +G+ KGD V + P + A
Sbjct: 18 PDRTAVVY------GDRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAH 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA-------VKRGPKAIHLKDIV 327
GAV + +D +A + + KV+ + D
Sbjct: 72 FGVPMAGAVLVPLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTE 131
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
+ A+ D YE+ A + D EW
Sbjct: 132 IIVISPAAEDSEEGD----YEDLLAGGDPDPLPIPPDD----------------EW---- 167
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD----CGWITG 443
DP+ L YTSG+TG PKGV++T G ++ A + VY T GW
Sbjct: 168 DPISLNYTSGTTGNPKGVVYTHRGAYLN-ALGNVIEWGMPDRPVYLWTLPMFHCNGW--C 224
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495
+ G + V D+ +D+++K+KVT APT++ L
Sbjct: 225 F---PWAITAVGGTHVCLRK----VDAPAIYDLIEKHKVTHLCGAPTVLNML 269
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 1e-18
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G++ +GD DGY + R D+I G I + EVE L HP EAAVV E
Sbjct: 401 GWFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDE 460
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744
G+ AFV L G +EE L+ R+++ F P + + LPKT +GKI +
Sbjct: 461 KWGETPCAFVVLKPGASVTEE---ELIEYCREKLAHFKVPKTVEFVE-LPKTATGKIQKF 516
Query: 745 ILRK 748
+LR+
Sbjct: 517 VLRE 520
|
This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520 |
| >gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Score = 89.3 bits (221), Expect = 2e-18
Identities = 114/543 (20%), Positives = 217/543 (39%), Gaps = 86/543 (15%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY ++++ + A L+ +G++KG V++ LP + E I L G V F+G
Sbjct: 55 AVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGV----FSGA 110
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--N 349
+ +L I K+ +A K IV + G+ + V + E
Sbjct: 111 NPTALESEI--------------KKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKI 156
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
+ A+ W++ + + + E + D L ++SG+TG KGV+ T
Sbjct: 157 EGAVN-----WKE-----LLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTH 206
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT-----GHSYVTYGPMLNGASVVVFEGA 464
+ + ++ F P + G I G + + + N VVV
Sbjct: 207 RNLVANLCSSL---FSVGPEMIGQVVT-LGLIPFFHIYGITGICCATLRNKGKVVV---- 258
Query: 465 PTYPDSGRSWDIVDKYKVTIFYTA------------PTLVRSLMRDGNEYVTRYSRKSLR 512
+ ++++ F A P ++ +L+++ S+ L+
Sbjct: 259 ------------MSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQ 306
Query: 513 VLGSVGEPINPSAWRWFFNVVGDSRCP---ISDTWWQTETGGFMIT---PLPGAWPQKPG 566
+ + P+ P F +++ P + + + TE +T P G K
Sbjct: 307 AIMTAAAPLAPELLTAF-----EAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKN 361
Query: 567 SATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625
S F ++ +D + G + G LC++S + Y + E + T + G
Sbjct: 362 SVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQC--VMQGYYNNKEETDRTIDED--G 417
Query: 626 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEV 685
+ TGD D DG ++ R+ ++I G ++ AE+E+ L++HP +AAVV + E
Sbjct: 418 WLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEE 477
Query: 686 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 745
G+ A V + SEE ++ V + + + + +PK+ SGKIMRR+
Sbjct: 478 AGEIPAACVVINPKAKESEE---DILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRL 534
Query: 746 LRK 748
L++
Sbjct: 535 LKE 537
|
Length = 546 |
| >gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (222), Expect = 4e-18
Identities = 107/534 (20%), Positives = 206/534 (38%), Gaps = 76/534 (14%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ L+Y++L ++ +LA+ L + GV V + + +E+ + +LA + G + +
Sbjct: 3080 EQRLSYAELNRRANRLAHRLIERGVGPDVLVGVAVERSLEMVVGLLAILKAGGAYVPLDP 3139
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+ + LA + D +++++ + ++ +D + A++ ++
Sbjct: 3140 EYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDENYAEANPAIRT------ 3193
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
E+ +++YTSGSTGKPKGV
Sbjct: 3194 -----------------------------------MPENLAYVIYTSGSTGKPKGVGIRH 3218
Query: 410 GGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469
H + A+ D + + P+++GA VV+ G + D
Sbjct: 3219 SALSNHLCWMQQ-AYGLGVGDRVLQFTTFSF-DVFVEELFWPLMSGARVVL-AGPEDWRD 3275
Query: 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPS-AWRW 528
++++ V + S+++ E + SL+ + GE + +
Sbjct: 3276 PALLVELINSEGVDV----LHAYPSMLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQV 3331
Query: 529 F-----FNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 583
F +N+ G + I+ T WQ G P+ + + ++PV V
Sbjct: 3332 FAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANR--ACYILDGSLEPVPVGAL 3389
Query: 584 G---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGY 640
G + EG GY + PG ER+ F P Y TGD DG
Sbjct: 3390 GELYLGGEGLARGYH----NRPGL------TAERFVPDPFVPGERLYRTGDLARYRADGV 3439
Query: 641 HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 700
GRVD + + G RI E+E+ L+ HP EA V+ V+ G+ + A+V +
Sbjct: 3440 IEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEA 3495
Query: 701 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754
+LR++L ++ + + P + + +P T +GK+ R+ L + + L
Sbjct: 3496 G---DLREALKAHLKASLPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALL 3546
|
Length = 5163 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 7e-18
Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 15/217 (6%)
Query: 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598
P+ ++ TET ++T P K GSA P F + I + V E G + +K
Sbjct: 280 PVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFE-EGEIVVK 338
Query: 599 SS--WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGH 656
G R + T G++ TGD D++G+ ++ R D+I G
Sbjct: 339 GPNVTKGYLN-------REDATRETFQDGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGE 391
Query: 657 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK 716
I AE+E L+SHP AEA VVGV + GQ AFV V+ +EE L +
Sbjct: 392 NIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFV--VKSGEVTEE---ELRHFCEE 446
Query: 717 QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753
++ + P + ++ LP+ SGK++R L+++
Sbjct: 447 KLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEEM 483
|
Length = 483 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-17
Identities = 79/335 (23%), Positives = 121/335 (36%), Gaps = 75/335 (22%)
Query: 212 AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A D + +D + TLTY++L ++ +A L+ +G GD V++ P ++
Sbjct: 4 AAQPDARYTFL-FDDDDEEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFV 61
Query: 272 IAMLACARIGAV----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327
A C GA+ G LA + D + V+T++AV +
Sbjct: 62 AAFFGCLYAGAIAVPAPPPRRLGRHLARLAAILADAGARAVLTTSAVLAA---------L 112
Query: 328 DAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAE 387
AAL A + + +A W+ P D +
Sbjct: 113 RAALAAPAALLLLLIAADDLAALAAAD-------------WRPPPP-----------DPD 148
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCT-----ADCGWIT 442
D FL YTSGSTG PKGV+ T G + + + AF P DV + D G I
Sbjct: 149 DIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIAR-AFGLDPDDV-GVSWLPLYHDMGLIG 206
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRSLMR 497
G P+ G VV+ +P P W + + +Y+ T+ AP L
Sbjct: 207 G----LLQPLYAGFPVVLM--SPLAFLRRP---LRWLEAISRYRATVSG-APNFAYDLC- 255
Query: 498 DGNEYVTRYSRK--------SLRVLGSVGEPINPS 524
V R + S RV + EP+
Sbjct: 256 -----VRRVRDEQLAGLDLSSWRVAFNGAEPVRAD 285
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 7e-17
Identities = 119/576 (20%), Positives = 214/576 (37%), Gaps = 94/576 (16%)
Query: 199 TNICYNCLDRNIEAGLG---DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVK 255
T +C+ + IEA ++ A+ + + L+Y++L +Q +LA+ L GV
Sbjct: 507 TEYAPDCVHQLIEAQARQHPERPALVFG------EQVLSYAELNRQANRLAHVLIAAGVG 560
Query: 256 KGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT-SNAV 314
V I + +E+ + +LA + G + + + D LA + D ++++T S+ +
Sbjct: 561 PDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDRLAYMLDDSGVRLLLTQSHLL 620
Query: 315 KRGPKAIHLKDIV-DAALDE-CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ P L+ + D D C SG + +V L +N +
Sbjct: 621 AQLPVPAGLRSLCLDEPADLLCGYSGHNPEVALDPDNLA--------------------- 659
Query: 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGG---YMVHTATTFKYAFDYKPS 429
+++YTSGSTG+PKGV + G Y+ A + A D
Sbjct: 660 ------------------YVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSML 701
Query: 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489
V D G +G + +GA++ + D+ ++ VT+ P
Sbjct: 702 MVSTFAFDLG-----VTELFGALASGATLHLL-PPDCARDAEAFAALMADQGVTVLKIVP 755
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF------FNVVGDSRCPISDT 543
+ +++L++ + R +++L G + + R N G + + +
Sbjct: 756 SHLQALLQASRVALPR-PQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGVS 814
Query: 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFG-VQPVIVDEKG---VEIEGECSGYLCIKS 599
++ +P P + + PV V G + G GY
Sbjct: 815 TYELSDEERDFGNVPIGQPL-ANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYH---- 869
Query: 600 SWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 657
P ER+ F G Y TGD DG GR+D + + G R
Sbjct: 870 RRPAL------TAERFVPDPFGA-DGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFR 922
Query: 658 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV-----EGVPYSEELRKSLVL 712
I E+E+ L++ P EA V+ + Q + V E +EL+ L
Sbjct: 923 IELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYLVPAAVADGAEHQATRDELKAQL-- 980
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
R+ + + P + LP T +GK+ R+ L K
Sbjct: 981 --RQVLPDYMVPAHLLLLDSLPLTPNGKLDRKALPK 1014
|
Length = 3956 |
| >gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-16
Identities = 63/215 (29%), Positives = 94/215 (43%), Gaps = 21/215 (9%)
Query: 545 WQTETG-----GFMIT---PLPGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECS 592
W TG G+ +T PL P GS P + +VD+ G E+
Sbjct: 345 WVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEP 404
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G L +K + + G +R E T G+ TGD D++G+ + R D+I
Sbjct: 405 GELWVKGP-----QVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFLRIVDRKKDMIL 459
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSG + E+E ++ HP+ E A VGV EV G+ + FV + EEL
Sbjct: 460 VSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELITH--- 516
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
R+ + + P + + LPK+ GKI+RR LR
Sbjct: 517 -CRRHLTGYKVPKLVEFRDELPKSNVGKILRRELR 550
|
Length = 560 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G+Y +GD S D DGY + GR D IN G +I E+E+ L+ HP AA+V +E E
Sbjct: 409 GFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDE 468
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMR 743
+ G+ AF+ + E + + +LR+ L R+Q I F PD++ LP T GK+ +
Sbjct: 469 LMGEKSCAFLVVKEPLK-AVQLRRFL----REQGIAEFKLPDRVECVDSLPLTAVGKVDK 523
Query: 744 RILRKIASRQL 754
+ LR+ + +
Sbjct: 524 KQLRQWLASRA 534
|
Length = 536 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 2e-16
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G++ TGD DGY + R D+I G I + EVE L HP AAVV
Sbjct: 416 GWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDP 475
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744
G+ AFV L +G +EE ++ R+ + F P + + LPKT +GKI +
Sbjct: 476 KWGEVPCAFVELKDGASATEE---EIIAHCREHLAGFKVPKAVVFGE-LPKTSTGKIQKF 531
Query: 745 ILRKIA 750
+LR+ A
Sbjct: 532 VLREQA 537
|
Length = 545 |
| >gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009) | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-16
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 721 FAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLAD 765
+A P ++ + LPKTRSGKI+RR+LR IA + +LGD STL D
Sbjct: 1 YAVPREVEFVDELPKTRSGKILRRLLRAIALGE--DLGDLSTLED 43
|
This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43 |
| >gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-16
Identities = 132/575 (22%), Positives = 198/575 (34%), Gaps = 114/575 (19%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y++LL++ ++ L+ +G+K GD+VI+ L + A AC V GF
Sbjct: 39 FQSYAELLEEAERILAGLRALGLKPGDSVILQLERNEDFVTAFWAC---------VLGGF 89
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+A P NA K + + L V LT
Sbjct: 90 VPVPVA------VPPTYDEPNAAVA--KLRN----IWELLGSP--------VILTDAALV 129
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW--VDAEDPLFLLYTSGSTGKPKGVLHTT 409
A + + + +DP LL TSGSTG PK V+ T
Sbjct: 130 AALAGLRTRAGLEALRVLAIEELRSAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTH 189
Query: 410 GGYMVHTATTFKYAFDYKPSDVY--WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTY 467
+ +A T + + P DV W D + G + + G +
Sbjct: 190 RNILARSAGTVQVN-GFTPDDVSLNWMPLD--HVGGIVMLHLRDVYLGCQQIHVPTDYIL 246
Query: 468 PDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT--RYSRKSLRVLGSVGEPINPSA 525
D R D++D+Y+VTI + AP +L+ D E + + SLR + + GE +
Sbjct: 247 ADPLRWLDLIDRYRVTITW-APNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKT 305
Query: 526 WRWF------FNVVGDSRCPISDTWWQTETGGFMI--------------------TPLPG 559
R F + + D+ P + +ET + PL
Sbjct: 306 IRRFLELLAPYGLPADAIRP---AFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRF 362
Query: 560 AWPQKPGSATF-----PFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHER 614
A P + TF P GV IVDE G + G L ++
Sbjct: 363 AAADHPEAVTFVELGRPIPGVAIRIVDEDGALLPEGEVGRLQVRG--------------- 407
Query: 615 YETTYFKPFPGYY---------FTGDGCSRDKD-GYHW-----LTGRVDDVINVSGHRIG 659
T GYY FT DG R D G+ +TGR D+I ++G
Sbjct: 408 -PTV----TSGYYRNPEANAEAFTEDGWFRTGDLGFLHDGRLTITGREKDMIIINGVNYY 462
Query: 660 TAEVESALVS----HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR 715
E+E+A+ P A V + FV + L +++ V
Sbjct: 463 NHEIEAAVEQVPGVEPSFTAACAVRDAGSGTDELAVFFVPRYDLDDRLAALLRAIRTHVA 522
Query: 716 KQIGAFAAPDKIHWAPG-LPKTRSGKIMRRILRKI 749
++IG A I A PKT GKI R LRK
Sbjct: 523 RKIG-IAPAYVIPLAKEDFPKTSLGKIQRAQLRKR 556
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560 |
| >gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 5e-16
Identities = 91/373 (24%), Positives = 135/373 (36%), Gaps = 41/373 (10%)
Query: 388 DPLFLLYTSGSTGKPKGVLHTTGGYM--VHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
D +++T G+TG PK V T V T + P D A GH
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIIT---GYRLSPRDA--TVAVMPLYHGH- 230
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRS-----WDIVDKYKVTIFYTAPTLVRSLMRDGN 500
G + + + GA P GR WD + T + PT+ + L+
Sbjct: 231 ----GLIAALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAA 286
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET---------GG 551
+ +LR + S P+ + P+ + TE G
Sbjct: 287 TEPSGRKPAALRFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQVTTTQIEG 343
Query: 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611
T P G +T G Q IV G+ + G + ++ R GD
Sbjct: 344 IGQTENPVVSTGLVGRST----GAQIRIVGSDGLPLPAGAVGEVWLRG--TTVVRGYLGD 397
Query: 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671
+ G+ TGD S G + GR+ ++IN G +I VE L SHP
Sbjct: 398 PTITAANFTD---GWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHP 454
Query: 672 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731
EAAV GV ++ G+ + A + E P + + LV R+++ AF P A
Sbjct: 455 NVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT---AEELVQFCRERLAAFEIPASFQEAS 511
Query: 732 GLPKTRSGKIMRR 744
GLP T G + RR
Sbjct: 512 GLPHTAKGSLDRR 524
|
Length = 534 |
| >gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 6e-16
Identities = 129/562 (22%), Positives = 202/562 (35%), Gaps = 136/562 (24%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D T+ +L + ++AN+ + G + GD V +++ +E L A+IG +++ +
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINS 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
+SL I K K +I + L ++ + E
Sbjct: 61 NLRLESLLHCITVSKAKALIFN----------LLDPLLTQSSTE---------------- 94
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTT 409
P + V+ D LF +YTSG+TG PK +
Sbjct: 95 --------------------------PPSQDD--VNFRDKLFYIYTSGTTGLPKAAVIVH 126
Query: 410 GGYMVHTATTFKYAFDYKPSDV-YWC-----TADCGWITGHSYVTYGPMLNGASVVV--- 460
Y A + YAF +P DV Y C +A G I G +L+G++VV+
Sbjct: 127 SRYYRIAAGAY-YAFGMRPEDVVYDCLPLYHSA--GGIMGVGQA----LLHGSTVVIRKK 179
Query: 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
F + WD KY TI + R L+ + + +K V +VG
Sbjct: 180 FSAS-------NFWDDCVKYNCTIVQYIGEICRYLL---AQPPSEEEQKH-NVRLAVGNG 228
Query: 521 INPSAWRWF---FNV------VGDSRCPISDTWWQTETG--GFMITPLPGAWPQKPGSAT 569
+ P W F F + G + S G GF LP +P
Sbjct: 229 LRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSVYP------- 281
Query: 570 FPFFGVQPVIVDEKGVEIEGECSGYLCI--KSSWPGAF----------RTLYG------D 611
++ + VDE E+ + G LCI + PG R G
Sbjct: 282 -----IRLIKVDEDTGELIRDSDG-LCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEGAT 335
Query: 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671
+++ FK + +GD D+ GY + R D G + T EVE L +
Sbjct: 336 NKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSNVL 395
Query: 672 QCAEAAVVGVE-HEVKGQ-GIYAFVTLVEGVP---YSEELRKSLVLAVRKQIGAFAAPDK 726
+ V GVE V+G+ G+ A V V +S L KSL +A P
Sbjct: 396 GLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLP--------PYARPQF 447
Query: 727 IHWAPGLPKTRSGKIMRRILRK 748
I P + KT + K+ + L+K
Sbjct: 448 IRLLPEVDKTGTFKLQKTDLQK 469
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474 |
| >gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 7e-16
Identities = 100/412 (24%), Positives = 154/412 (37%), Gaps = 76/412 (18%)
Query: 376 PTKCEVEWVDAED-----PLF-------LLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKY 422
P C V A+D P F L YTSG+TG PKG L++ ++H
Sbjct: 153 PLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPD 212
Query: 423 AFDYKPSDVY-----------WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471
A D W +TG V GP L+G S+
Sbjct: 213 AMGLSARDAVLPVVPMFHVNAWGLPYSAPLTGAKLVLPGPDLDGKSL------------- 259
Query: 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531
+++++ +VT PT+ L+ E R+S V+G G P+ R F +
Sbjct: 260 --YELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIG--GSACPPAMIRTFED 315
Query: 532 VVGDSRCPISDTWWQTETGGF-MITPLPGAWPQKPGSATF--------PFFGVQPVIVDE 582
G + W TE + L Q P +GV IV +
Sbjct: 316 EYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGD 372
Query: 583 KGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PF-PGYYFTGDGCSR 635
G E+ +G+ G L ++ W YF+ P G++ TGD +
Sbjct: 373 DGRELPWDGKAFGDLQVRGPW-------------VIDRYFRGDASPLVDGWFPTGDVATI 419
Query: 636 DKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVT 695
D DG+ +T R DVI G I + ++E+ V+HP AEAA + H + V
Sbjct: 420 DADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVV 479
Query: 696 LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
G E R+ L+ ++ + PD + + +P T +GK+ + LR
Sbjct: 480 KRPGA---EVTREELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLR 528
|
Length = 539 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-15
Identities = 64/300 (21%), Positives = 105/300 (35%), Gaps = 87/300 (29%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A+ +E D +++Y++L + + A++ GV KGD V + + E A
Sbjct: 51 PDRPALLFE------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAW 104
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L A++GAV +++ LA + N V K + IV L E
Sbjct: 105 LGLAKLGAVVALLNTQQRGAVLAHSL-----------NLVD--AKHL----IVGEELVEA 147
Query: 335 ---AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV---VPKYPTKCEVEW--VDA 386
A++ ++ L + +G ++D+ PT V A
Sbjct: 148 FEEARADLARPPRLWVAGG-----DTLDDPEG----YEDLAAAAAGAPTTNPASRSGVTA 198
Query: 387 EDPLFLLYTSGSTGKPKGVL--H----TTGGYMVHTATTFKYAFDYKPSDVYWCT----- 435
+D F +YTSG+TG PK + H G P DV +C
Sbjct: 199 KDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-------RLTPDDVLYCCLPLYH 251
Query: 436 ---ADCGWITGHSYVTYGPMLN-GASVVVFEGAPTYPDSGRS------WDIVDKYKVTIF 485
W +L GA++ + R WD V +Y+ T F
Sbjct: 252 NTGGTVAW---------SSVLAAGATLAL----------RRKFSASRFWDDVRRYRATAF 292
|
Length = 600 |
| >gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-15
Identities = 46/128 (35%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G++ +GD + DGY + R D+I G I + EVE+ + +HP EA+VV E
Sbjct: 430 GWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDE 489
Query: 685 VKGQGIYAFVTLVEGVPYSEE--LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742
G+ AFVTL GV S+E L + ++ R+++ A+ P + + P LPKT +GKI
Sbjct: 490 RWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVFGP-LPKTATGKIQ 548
Query: 743 RRILRKIA 750
+ +LR A
Sbjct: 549 KHVLRAKA 556
|
Length = 567 |
| >gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 8e-15
Identities = 132/549 (24%), Positives = 215/549 (39%), Gaps = 67/549 (12%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
T+ Q + C+LA L + + K D V + P + A GAV + +
Sbjct: 40 FTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLD 99
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
+ S+A + KPK++ + + + + L S +++ V +E
Sbjct: 100 ATSIAAILRHAKPKILFVDRSFEPLAREV-------LHLLSSEDSNLNLPVIFIHEIDF- 151
Query: 353 MTRENTKWQDGRDIWWQDVVPK-YPTKCEVEWV----DAEDPLFLLYTSGSTGKPKGVLH 407
K ++ ++ ++ + PT V + D DP+ L YTSG+T PKGV+
Sbjct: 152 -----PKRPSSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVI 206
Query: 408 T-TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPT 466
+ G Y+ + + P VY T G ++ T+G G + V T
Sbjct: 207 SHRGAYLSTLSAIIGWEMGTCP--VYLWTLPMFHCNGWTF-TWGTAARGGTSVCMRHV-T 262
Query: 467 YPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAW 526
P+ ++ ++ + VT PT+ L++ GN + VL P P+A
Sbjct: 263 APEIYKN---IEMHNVTHMCCVPTVFNILLK-GNSLDLSPRSGPVHVLTGGSPP--PAAL 316
Query: 527 -----RWFFNVVGDSRCPISDTWWQTE-TGGFMITPLPGAWPQKPGSATFPFFGVQPVI- 579
R F V+ + TE TG + W + P + Q V
Sbjct: 317 VKKVQRLGFQVM--------HAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSI 368
Query: 580 -----VDEKGVEI------EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
VD K E +G+ G + IK S + Y + + + FK G+
Sbjct: 369 LGLADVDVKNKETQESVPRDGKTMGEIVIKGS---SIMKGYLKNPKATSEAFKH--GWLN 423
Query: 629 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688
TGD DG+ + R D+I G I + EVE+ L +P+ E AVV + H G+
Sbjct: 424 TGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGE 483
Query: 689 GIYAFVTLVEGVPYSEELRKSLVLA-------VRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
AFV L +G E+ LV R+ + F P K+ + LPK +GKI
Sbjct: 484 TPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQELPKNGNGKI 543
Query: 742 MRRILRKIA 750
++ LR IA
Sbjct: 544 LKPKLRDIA 552
|
Length = 579 |
| >gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-14
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 50/190 (26%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+Y ++ +QV LAN L++ GVK GD+V + LP + L +A+ A GA +
Sbjct: 481 RYQFSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDT 540
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348
G+ D L + D +P ++IT+ D+ + + + L Y
Sbjct: 541 GYPDDRLKMMLEDARPSLLITTA-------------------DQLPRFADVPDLTSLCYN 581
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT 408
A Q P ++ ++++TSGSTG+PKGV
Sbjct: 582 APLAP---------------QGAAPLQLSQP-------HHTAYIIFTSGSTGRPKGV--- 616
Query: 409 TGGYMV-HTA 417
MV TA
Sbjct: 617 ----MVGQTA 622
|
Length = 1296 |
| >gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 76/278 (27%), Positives = 120/278 (43%), Gaps = 26/278 (9%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP-INPSAWRWFFNVVGDSR 537
K++ + TL +LM +S L++ S G + +A RW + G
Sbjct: 305 KWRFSALLGLNTLFVALMDHPGFKDLDFSA--LKLTNSGGTALVKATAERWE-QLTG--- 358
Query: 538 CPISDTWWQTETGGFMITPLPGAWP----QKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593
C I + + TET +P+ P + G+ P G ++D+ G E+ G
Sbjct: 359 CTIVEGYGLTET-----SPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERG 413
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTY-FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
LCIK + + G ++ E T G++ TGD D DG+ + R D+I
Sbjct: 414 ELCIKGP-----QVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLII 468
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSG + E+E +++HP+ A A +GV E G+ + FV + EEL+
Sbjct: 469 VSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSVEELKAY--- 525
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750
++ + P I LP T GKI+RR LR IA
Sbjct: 526 -CKENFTGYKVPKHIVLRDSLPMTPVGKILRRELRDIA 562
|
Length = 562 |
| >gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (188), Expect = 2e-14
Identities = 67/240 (27%), Positives = 105/240 (43%), Gaps = 23/240 (9%)
Query: 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFMITPLP-GAWPQKPGSA 568
LRV+ S G+ ++P+ + F + GD + + + TE G G + TP P+ G
Sbjct: 294 LRVVMSSGDRLDPTLGQRFMDTYGDI---LYNGYGSTEVGIGALATPADLRDAPETVGK- 349
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-FPGYY 627
P G I+D + +G + + G RY K G
Sbjct: 350 --PVAGCPVRILDRNNRPVGPRVTGRIFVGGELAG---------TRYTDGGGKAVVDGMT 398
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD D G ++ GR DD+I G + VE+AL +HP A+ AV+GV E G
Sbjct: 399 STGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFG 458
Query: 688 QGIYAFVTLVEGVPY-SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+ AFV L G + +LR L + ++ F P I+ +P+ +GK++R+ L
Sbjct: 459 HRLAAFVVLHPGSGVDAAQLRDYL----KDRVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
|
Length = 516 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-14
Identities = 132/567 (23%), Positives = 226/567 (39%), Gaps = 126/567 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+++A+ W+ +L Y++L Q +LA+YL+D GV V I +L + +L
Sbjct: 1146 ERIALVWDG------GSLDYAELHAQANRLAHYLRDKGVGPDVCVAIAAERSPQLLVGLL 1199
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAV-KRGPKAIHLKDIVDAALDEC 334
A + G + + + ++ LA + D ++++T + + +R P+A + I ALD
Sbjct: 1200 AILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAI---ALDS- 1255
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
L ++ +P++ + ++ +++Y
Sbjct: 1256 ----------LHLDS-------------------------WPSQAPGLHLHGDNLAYVIY 1280
Query: 395 TSGSTGKPKGVLHTTGG------YMVHTATTFKYAFDYKPSDVYWCTA---------DCG 439
TSGSTG+PKGV +T +M T YA D SDV A +C
Sbjct: 1281 TSGSTGQPKGVGNTHAALAERLQWMQAT-----YALD--DSDVLMQKAPISFDVSVWECF 1333
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W P++ G +V+ G + D R ++V +Y VT + P L++ + +
Sbjct: 1334 W----------PLITGCRLVL-AGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEP 1382
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWR----------WFFNVVGDSRCPISDTWWQTET 549
SLR L S GE + P+ R N G + I+ T WQ +
Sbjct: 1383 LAAACT----SLRRLFSGGEAL-PAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQA 1437
Query: 550 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLY 609
+P+ G P V ++D + + +G LCI + G R
Sbjct: 1438 EDGERSPI--------GR---PLGNVLCRVLDAELNLLPPGVAGELCIGGA--GLARGYL 1484
Query: 610 G----DHERYETTYFKPFPG------YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659
G ER F P P Y TGD + DG GR+D + + G R+
Sbjct: 1485 GRPALTAER-----FVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVE 1539
Query: 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG 719
E+++ L++ P A+AAV+ V G + + T G E + L A+ ++
Sbjct: 1540 PEEIQARLLAQPGVAQAAVL-VREGAAGAQLVGYYTGEAG---QEAEAERLKAALAAELP 1595
Query: 720 AFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+ P ++ +P SGK+ RR L
Sbjct: 1596 EYMVPAQLIRLDQMPLGPSGKLDRRAL 1622
|
Length = 4334 |
| >gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-14
Identities = 74/280 (26%), Positives = 116/280 (41%), Gaps = 22/280 (7%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538
K+K + F TL +L NE + +L++ S G + + + V G C
Sbjct: 298 KWKFSGFVGLNTLFVALCN--NEAFRKLDFSALKLTLSGGMALQLATAERWKEVTG---C 352
Query: 539 PISDTWWQTETGGFMITPLPGAWPQK---PGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595
I + + TET +P+ P + G+ P ++D+ G E+ G L
Sbjct: 353 AICEGYGMTET-----SPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGEL 407
Query: 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655
C+K P + + E T G+ TGD +DGY + R D+I VSG
Sbjct: 408 CVKG--PQVMKGYWQRPE--ATDEILDSDGWLKTGDIALIQEDGYMRIVDRKKDMILVSG 463
Query: 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA-V 714
+ E+E L + P + A +GV E G+ I FV V E L K V+ +
Sbjct: 464 FNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVV----VKPGETLTKEQVMEHM 519
Query: 715 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754
R + + P + + LP T GKI+RR LR ++
Sbjct: 520 RANLTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKKA 559
|
Length = 562 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 7e-14
Identities = 63/279 (22%), Positives = 105/279 (37%), Gaps = 34/279 (12%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI + + +TY++L + + A L+ GV GD V ++LP + I
Sbjct: 48 QRPAIIFYGH------VITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFF 101
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
++GAVH V F L+ + D +V++ + L +V+ E +
Sbjct: 102 GILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ---------LAPVVEQVRAETS 152
Query: 336 KSGISV----DVCLTYEN--QSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVDA 386
+ V DV R G D++P +
Sbjct: 153 LRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAG----AIDLLPALRACTAPVPLPPPAL 208
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADCGWITGHS 445
+ L YT G+TG PKG HT MV+TA A V+ WI G +
Sbjct: 209 DALAALNYTGGTTGMPKGCEHTQ-RDMVYTAAAAYAVAVVGGEDSVFLSFLPEFWIAGEN 267
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTI 484
+ P+ +GA++V+ D+ V++Y+VT
Sbjct: 268 FGLLFPLFSGATLVLL----ARWDAVAFMAAVERYRVTR 302
|
Length = 567 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 74.4 bits (182), Expect = 8e-14
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
YG+ E + G++ TGD D++GY + R+ D+I G I + ++E+AL+
Sbjct: 375 YGNEEATRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 432
Query: 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
HP+ EAAVV + H + A V P EEL ++ + PD
Sbjct: 433 GHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEEL---NEHLLKAGFAKWQLPDAYV 489
Query: 729 WAPGLPKTRSGKIMRRILRK 748
+A +P+T +GK ++R LR+
Sbjct: 490 FAEEIPRTSAGKFLKRALRE 509
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 620 FKPF--PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
PF PG++ T D + D DG + GR DD I+ G + VE+AL +HP A+ A
Sbjct: 227 PDPFAEPGWFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCA 285
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
V G+ + GQ + V V G ++L V + + AAP ++H LP+
Sbjct: 286 VFGLPDDRLGQRV---VAAVVGDGGPAPTLEALRAHVARTLDRTAAPRELHVVDELPRRG 342
Query: 738 SGKIMRRILRK 748
GK+ RR L +
Sbjct: 343 IGKVDRRALVR 353
|
Length = 358 |
| >gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS) | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-13
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y +L + + AN L +GV KG+ V LP EL +A L ++GAV+ +F+ F
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKR 316
+ + R+ + KV+IT+ +
Sbjct: 61 PEPIRDRLELGEAKVLITTPELYE 84
|
This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443 |
| >gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
L+Y++L +Q ++AN L D+GVK GD V LP EL +A+LA R+GA++ +F F
Sbjct: 1 LSYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFG 60
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRG 317
++ R+ KVV+T NA RG
Sbjct: 61 PKAIEYRLGHSGAKVVVT-NAANRG 84
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-13
Identities = 98/392 (25%), Positives = 151/392 (38%), Gaps = 73/392 (18%)
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV----YWCTADCGWITGHSY 446
+L+YTSGSTGKPKGV+ + G +H + F + D Y D S
Sbjct: 2337 YLIYTSGSTGKPKGVVVSHGEIAMHCQAVIE-RFGMRADDCELHFYSINFDAA-----SE 2390
Query: 447 VTYGPMLNGASVVV-FEGAPTYPDSGRSWD------IVDKYKVTIFYTAPTLVRSLMRDG 499
P+L GA VV+ +G W ++ + +V+I P+ L
Sbjct: 2391 RLLVPLLCGARVVLRAQG---------QWGAEEICQLIREQQVSILGFTPSYGSQL---A 2438
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWR---------WFFNVVGDSRCPISDTWWQTETG 550
+ + +R+ + GE + + FFN G TET
Sbjct: 2439 QWLAGQGEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYG-----------PTET- 2486
Query: 551 GFMITPLPGAWPQ--KPGSATFPFFGV----QPVIVDEKGVEIEGECSGYLCIKSSWPGA 604
++ PL P+ + G+A+ P V I+D + +G L + G
Sbjct: 2487 --VVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGATGELYV-----GG 2539
Query: 605 FRTLYGDHERYETT--YFKPFP------GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGH 656
G H+R T F P Y TGD DG GR+D + + G
Sbjct: 2540 AGLAQGYHDRPGLTAERFVADPFAADGGRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGF 2599
Query: 657 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE--ELRKSLVLAV 714
RI E+ES L+ HP EA V+ ++ Q V+ V G LR++L +
Sbjct: 2600 RIELGEIESRLLEHPAVREAVVLALDTPSGKQLAGYLVSAVAGQDDEAQAALREALKAHL 2659
Query: 715 RKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
++Q+ + P + LP T +GK+ RR L
Sbjct: 2660 KQQLPDYMVPAHLILLDSLPLTANGKLDRRAL 2691
|
Length = 4334 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 6e-13
Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 547 TETGGFMIT--PLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPG 603
TET M T P G ++ G+ FP GV + D E G E+ G + +K P
Sbjct: 304 TETN--MNTSNPYDGE--RRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG--PN 357
Query: 604 AFRTLYGDHERYETTY--FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661
F+ G E T F+ G++ TGD D+ GY + GR D+I G+ +
Sbjct: 358 VFK---GYWRMPEKTAEEFRA-DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPK 413
Query: 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF 721
EVE + P E+AV+GV H G+G+ A V G E +++ A++ ++ F
Sbjct: 414 EVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEA---AILAALKGRLARF 470
Query: 722 AAPDKIHWAPGLPKTRSGKIMRRILR 747
P ++ + LP+ GK+ + +LR
Sbjct: 471 KQPKRVFFVDELPRNTMGKVQKNLLR 496
|
Length = 504 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 7e-13
Identities = 81/276 (29%), Positives = 123/276 (44%), Gaps = 28/276 (10%)
Query: 479 KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV-LG---SVGEPINPSAWRWFFNVVG 534
KY+V IF TL +L+ N + L V G +V P+ A RW + G
Sbjct: 299 KYQVHIFPAVNTLYNALLN--NPDFDKLDFSKLIVANGGGMAVQRPV---AERWL-EMTG 352
Query: 535 DSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSG 593
CPI++ + +ET + T P + G+ P + I D+ G ++ GE G
Sbjct: 353 ---CPITEGYGLSETSP-VATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGE-PG 407
Query: 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
+CI+ + + G R + T G++ TGD D+ GY + R D+I
Sbjct: 408 EICIRGP-----QVMAGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMIL 462
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
VSG + E+E + SHP E A VGV E G+ + FV V L + V
Sbjct: 463 VSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFV-----VKKDPALTEEDVK 517
Query: 713 A-VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
A ++++ + P + + LPKT GKI+RR LR
Sbjct: 518 AFCKERLTNYKRPKFVEFRTELPKTNVGKILRRELR 553
|
Length = 557 |
| >gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 9e-13
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY++L + + A YL+ +GVKKGD V + LP + PIA + GAV V
Sbjct: 22 GRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
++ L ++ D KV+I
Sbjct: 82 LYTPRELEHQLNDSGAKVLIV 102
|
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468 |
| >gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-12
Identities = 58/227 (25%), Positives = 92/227 (40%), Gaps = 29/227 (12%)
Query: 537 RCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC----- 591
C + D + +E ++ PG PGS GV I + + + EC
Sbjct: 288 GCQVEDGYGSSEGAV-IVVREPGT---PPGSIGRGAPGV--AIYNPETLT---ECAVARF 338
Query: 592 --SGYLC---------IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGY 640
G L + ++ G F Y + E T + G Y++GD RD DG+
Sbjct: 339 DAHGALLNADEAIGELVNTAGAGFFEGYYNNPE---ATAERMRHGMYWSGDLAYRDADGW 395
Query: 641 HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 700
+ GR D + V G + A +E L+ HP AV V E G + A + L +G
Sbjct: 396 IYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGA 455
Query: 701 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ + + LA + +G A P + A LP T + K+++R L
Sbjct: 456 TFDPDAFAAF-LAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELI 501
|
Length = 540 |
| >gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM) | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++L ++ + AN+LKD+GV +GD V + LP + EL +L C ++GAV
Sbjct: 2 TFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGP 61
Query: 294 DSLAQRIMDCKPKVVITS 311
+ R+ + ++TS
Sbjct: 62 KDIRYRLERAGARAIVTS 79
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430 |
| >gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 1e-11
Identities = 123/550 (22%), Positives = 207/550 (37%), Gaps = 98/550 (17%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+ L Y +L+ +V LA L+ V +G V++ E +++LACA++GA+ +
Sbjct: 40 SALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKLGAIAVMADGN 99
Query: 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350
++ + P + + K +A+ E S + V + +
Sbjct: 100 LPIAAIERFCQITDPAAALVAPGSKMA----------SSAVPEALHSIPVIAVDIAAVTR 149
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG 410
+ + G +EDPL +++TSG+TG+PK VL
Sbjct: 150 ESEHSLDAASLAGN--------ADQ---------GSEDPLAMIFTSGTTGEPKAVL---- 188
Query: 411 GYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM---------------LNG 455
+ T F + + W T W+ G + TY P+ ++G
Sbjct: 189 ---LANRTFFAVPDILQKEGLNWVT----WVVGET--TYSPLPATHIGGLWWILTCLMHG 239
Query: 456 ASVVVFEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
V T ++ S +I+ V PTL+ L+ + + SLR++
Sbjct: 240 GLCV------TGGENTTSLLEILTTNAVATTCLVPTLLSKLVSELK--SANATVPSLRLV 291
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP---GAWPQ-KPGSATF 570
G G + R F G + + +ETG + LP G+ + + G+
Sbjct: 292 GYGGSRAIAADVR-FIEATG---VRTAQVYGLSETGCTALC-LPTDDGSIVKIEAGAVGR 346
Query: 571 PFFGVQPVIVDEKG----VEIEGECSGY--LCIKSSWPGAFRTLYGDHERYETTYFKPFP 624
P+ GV + G G + + L IKS P + + ER
Sbjct: 347 PYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKS--PANMLGYWNNPERTAEVLID--- 401
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G+ TGD R +DG+ ++ GR ++I G I EV+ EAA +E
Sbjct: 402 GWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAAC----YE 457
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGA--------FAAPDKIHWAPGLPKT 736
+ + A V L V S EL +S A++ I A A P I +P+T
Sbjct: 458 IPDEEFGALVGL--AVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRT 515
Query: 737 RSGKIMRRIL 746
+SGK+MR L
Sbjct: 516 QSGKVMRASL 525
|
Length = 540 |
| >gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-11
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 625 GYYFTGDGCSRDKDGY-HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEH 683
G+ TGD D+ G+ H+L GR +++ V+G + +EVE+ L HP +AVVG
Sbjct: 442 GWLHTGDIGKIDEQGFLHYL-GRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPD 500
Query: 684 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
KGQ AFV L G + +L R+ + + P+ I LP T +GK+
Sbjct: 501 PDKGQVPVAFVQLKPGADLTAA---ALQAWCRENMAVYKVPE-IRIVDALPMTATGKV 554
|
Length = 567 |
| >gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-11
Identities = 120/588 (20%), Positives = 206/588 (35%), Gaps = 112/588 (19%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIA 273
GD W + T++ + + LA+ L D +G+ V + E
Sbjct: 24 GDTTVTTWGGAEQ---EQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEV 80
Query: 274 MLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA--------VKRGPKAIHLKD 325
+ A A +GAV + + +D + I + +V++ +K P +
Sbjct: 81 LFAVACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVF 140
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW-- 383
I + D A +YE DGR +W
Sbjct: 141 IGPSDADSAAAHMPEGIKVYSYE----------ALLDGR-------------STVYDWPE 177
Query: 384 VDAEDPLFLLYTSGSTGKPKGV-------------LHTTGGYMVHTATTFKYAFDYKPSD 430
+D + Y++G+TG PKGV L TT V +F
Sbjct: 178 LDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVP----- 232
Query: 431 VY----WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFY 486
+Y W +++G V GP L+ ++ I+ + +
Sbjct: 233 IYHVLSWGVPLAAFMSGTPLVFPGPDLSAPTLA---------------KIIATAMPRVAH 277
Query: 487 TAPTLVRSLMRDGNEYVTRYS--RKSLRVLGSVGEPINP---SAWRWFFNVVGDSRCPIS 541
PTL LM + + R SL+ + G + P AW + V +
Sbjct: 278 GVPTLWIQLM----VHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV------DVV 327
Query: 542 DTWWQTETG--GFMITPLPGA-----WPQKPGSATFPFFGVQPVIVDEKGV-EIEGECSG 593
W TET G + P G W + FP ++ IV++ V E G
Sbjct: 328 HVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPA-SLEYRIVNDGQVMESTDRNEG 386
Query: 594 YLCIKSSW-------------PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGY 640
+ ++ +W GA T G+ F G+ TGD S +DG+
Sbjct: 387 EIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA-DGWLRTGDVGSVTRDGF 445
Query: 641 HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 700
+ R DVI G I +A++E+ +++ P+ E AV+G + G+ A L G+
Sbjct: 446 LTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGI 505
Query: 701 PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
+ E + L +R ++ + P+ + + KT GK ++ LR+
Sbjct: 506 EPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQ 553
|
Length = 576 |
| >gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-11
Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 22/216 (10%)
Query: 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598
++ T+ TET + T P + S+ Q + I +G + I+
Sbjct: 256 RLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQ--------ITIPANQTGNITIQ 307
Query: 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 658
+ Y G + T D D GY + GR I G +
Sbjct: 308 A--QSLALGYYPQILDS--------QGIFETDDLGYLDAQGYLHILGRNSQKIITGGENV 357
Query: 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 718
AEVE+A+++ + V+G+ G+ + A + EEL+ A++ Q+
Sbjct: 358 YPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKT----AIKDQL 413
Query: 719 GAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754
F P P LP+ GKI R+ L++IA ++L
Sbjct: 414 SPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449
|
Length = 452 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-11
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 15/207 (7%)
Query: 547 TETG-GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGA 604
TET I PL + GS P I D+ G + GE G LCIK
Sbjct: 364 TETSPAACINPL--TLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEI-GELCIKGP---- 416
Query: 605 FRTLYGDHER-YETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663
+ + G +R ET G+ TGD D+ G+ ++ R D+I VSG + E+
Sbjct: 417 -QVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEI 475
Query: 664 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA 723
E + P E A VGV E G+ + + + +E+++ R + +
Sbjct: 476 EDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDVKAH----ARANLTGYKQ 531
Query: 724 PDKIHWAPGLPKTRSGKIMRRILRKIA 750
P I + LPKT GKI+RR LR A
Sbjct: 532 PRIIEFRKELPKTNVGKILRRELRDAA 558
|
Length = 560 |
| >gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+ QL +LAN L+++GV++GD V +YLP E IA LA ++GAV + F
Sbjct: 8 TFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGP 67
Query: 294 DSLAQRIMDCKPKVVITSNA 313
D++ R+ D +V++T +
Sbjct: 68 DAVEHRLRDSGARVLVTDGS 87
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439 |
| >gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 5e-11
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY +L ++ +LA+YL+ GV GD V I L E+ +A+L
Sbjct: 2 DAVAVVFG------DQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAIL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ LA + D K+++T
Sbjct: 56 AVLKAGAAYVPLDPAYPAERLAYMLEDSGAKLLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 1e-10
Identities = 84/396 (21%), Positives = 141/396 (35%), Gaps = 60/396 (15%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A+DP +L+TSGSTG PKGV++T + + + + + D
Sbjct: 84 ADDPAAILFTSGSTGPPKGVVYTHRTFAAQIDA---LRSLYGIREGDRDLAAFP------ 134
Query: 444 HSYVTYGPMLNGASVVVFEGAPTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
+ +GP L G + V+ PT P D + + + + + +P L++++ R
Sbjct: 135 -PFALFGPAL-GVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVAR--- 189
Query: 501 EYVTRYSRK--SLRVLGSVGEPINPSAWRWFFNVV----------GDSRC-PISDTWWQT 547
Y + SLR + S G P+ P R F + G + P++
Sbjct: 190 -YCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASI---- 244
Query: 548 ETGGFMITPLPGAWPQKPGSAT---FPFFGVQ---------PVIVDEKGVEIEGECSGYL 595
G ++ A P + G+ P G+ P+ + +E+ G +
Sbjct: 245 -EGREVLAE--SAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEI 301
Query: 596 CIKSSWPGAFRTLYGDHERYETT--YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 653
+ S P R Y E + ++ GD D G W GR +
Sbjct: 302 IV--SGPHVTREYYNRPEATKLAKISDGN-RIWHRMGDLGYFDDQGRLWFCGRKAHRVET 358
Query: 654 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA 713
+G + T VE HP +A+VGV + Q V + V + + + A
Sbjct: 359 AGGTLFTVPVEQVFNRHPGVRRSALVGVG-KPGTQAPVLVVEPMPPVLDRRKRLEGRLRA 417
Query: 714 VRKQIGAFAAPDKIHWAPGLPKTR--SGKIMRRILR 747
KQ A + P P + KI R L
Sbjct: 418 TAKQAPATVEIQAVLIHPQFPVDIRHNAKIFRERLA 453
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-10
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D +A+ + D TL+Y++L ++ QLA L+ +GV GD V + L +L A+L
Sbjct: 2 DAIALRDD------DRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALL 55
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A + GA + + + ++ L + D +P +++T
Sbjct: 56 AILKAGAAYVPLDPSYPAERLQYMLEDAEPALLLT 90
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438 |
| >gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 62.8 bits (152), Expect = 4e-10
Identities = 47/292 (16%), Positives = 85/292 (29%), Gaps = 32/292 (10%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY+++ Q+ +L L+ +GV GD V A A +GAV
Sbjct: 22 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP 81
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
S +A + + KV+ + D L ++ +
Sbjct: 82 RLSPKEIAYILNHAEDKVL-----------------LFDPNLLPLVEAIRGELKTVQ-HF 123
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT- 408
+ K +G + + V + YT+G+TG PKGV+++
Sbjct: 124 VV----MDEKAPEGYLA----YEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSH 175
Query: 409 TGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYP 468
+ A + DV + ++ V+
Sbjct: 176 RALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP----RL 231
Query: 469 DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520
D ++ D VT PT V + D E + R++
Sbjct: 232 DPASLVELFDGEGVTFTAGVPT-VWLALADYLESTGHRLKTLRRLVVGGSAA 282
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509 |
| >gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
TY++L ++V +LA L +GV+ GD V + L E A A ++GAV +
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITSNA 313
+ LA + ++++ A
Sbjct: 61 ALRGEELAHILDHSGARLIVVDTA 84
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-09
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684
G+ TGD D++GY + GR+ D+I G I E+E L +HP+ + VVGV E
Sbjct: 427 GWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDE 486
Query: 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK----QIGAFAAPDKIHWAPGLPKTRSGK 740
G+ + A++ L G +EE VR +I + P I + P T +GK
Sbjct: 487 KYGEEVCAWIILRPGATLTEE-------DVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGK 539
Query: 741 IMRRILRKIASRQLDE 756
I + +R++ +L
Sbjct: 540 IQKFKMREMMIEELGL 555
|
Length = 559 |
| >gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 51/197 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ AI +E + +T+ +L + V +A L +GVKKGD V + + ME+ + +
Sbjct: 17 DRTAIEFE------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIH 70
Query: 276 ACARIGAVHSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDE 333
A ++GAV V S + L ++ D + K +IT D +A L
Sbjct: 71 ALQQLGAV--AVLLNTRLSREELLWQLDDAEVKCLITD-------------DDFEAKLIP 115
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
GISV + +E + Q E D ++ ++
Sbjct: 116 ----GISVK----FAELMNGPKEEAEIQ--------------------EEFDLDEVATIM 147
Query: 394 YTSGSTGKPKGVLHTTG 410
YTSG+TGKPKGV+ T G
Sbjct: 148 YTSGTTGKPKGVIQTYG 164
|
Length = 483 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYF-KPF--PG--YYFTGDGCSRDKDGYHWLTGRV 647
G LC+ + G R GD R + PF PG Y TGD R DG GR+
Sbjct: 4067 GELCVAGT--GVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRI 4124
Query: 648 DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELR 707
D + + G+RI E+E+ L + EAA V V+ V G+ + ++ + V L
Sbjct: 4125 DHQVKIRGYRIELGEIEARLHEQAEVREAA-VAVQEGVNGKHLVGYLVPHQTVLAQGALL 4183
Query: 708 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+ + +R ++ + P W LP +GK+ R+ L
Sbjct: 4184 ERIKQRLRAELPDYMVPLHWLWLDRLPLNANGKLDRKAL 4222
|
Length = 4334 |
| >gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 4e-09
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
+ +LTY +L + AN L+ +GV GD V++ LP EL A LAC + GAV +
Sbjct: 8 EQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNP 67
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ L + D +++T
Sbjct: 68 LLTPQDLEHILDDSGAALLVTE 89
|
This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436 |
| >gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D VA+ + D +LTY++L ++ +LA++L +GV+ GD V + L L +A+L
Sbjct: 7 DAVAVDF------WDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAIL 60
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITS 311
A + GA + + + L I D VV+TS
Sbjct: 61 AVLKAGAAYVPIDPSAPVERLQFIIEDSGATVVLTS 96
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447 |
| >gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-08
Identities = 72/357 (20%), Positives = 128/357 (35%), Gaps = 84/357 (23%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L++++L + +A+ L G+ +G ++ + +E A + GAV +V G
Sbjct: 41 ELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGM 100
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351
+L Q + + +P I PKA HL L K + V +
Sbjct: 101 GIKNLKQCLAEAQPDAFIGI------PKA-HLARR----LFGWGKPSVRRLVTV------ 143
Query: 352 AMTRENTKWQDGRDIWWQDVVPKYPTKC------EVEWVDAEDPLFLLYTSGSTGKPKGV 405
G + W + + + +D +L+TSGSTG PKGV
Sbjct: 144 -----------GGRLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGV 192
Query: 406 LHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463
++T G + + + + +P ++ T + +GP L SV+ +
Sbjct: 193 VYTHGMFEAQIEAL---REDYGIEPGEIDLPTFPL-------FALFGPALGMTSVIP-DM 241
Query: 464 APTYP---DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV--- 517
PT P D + + +++Y VT + +P L+ E + RY + L S+
Sbjct: 242 DPTRPATVDPAKLFAAIERYGVTNLFGSPALL--------ERLGRYGEANGIKLPSLRRV 293
Query: 518 ---GEPINPSAWRWF----------FNVVGDSRC-PIS---------DTWWQTETGG 551
G P+ + F G + PIS T T+ G
Sbjct: 294 ISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGA 350
|
Length = 552 |
| >gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
LTY +L +LA L ++GV+ GD V LP E + LACARIGAV
Sbjct: 1 RLTYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAV 52
|
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437 |
| >gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290
+LT+ +L ++ ++A L+ G++KGD V++ +P +L A ++GAV ++ G
Sbjct: 1 DSLTFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPG 60
Query: 291 FSSDSLAQRIMDCKPKVVI 309
L + + + +P I
Sbjct: 61 MGRKHLGRCLEEAEPDAFI 79
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455 |
| >gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-08
Identities = 131/567 (23%), Positives = 206/567 (36%), Gaps = 114/567 (20%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
L+Y + L LA LK +K + V I LP + +A LA G V V +
Sbjct: 641 ELSYGKALTGALALARLLKRE-LKDEENVGILLPPSVAGALANLALLLAGKV--PVNLNY 697
Query: 292 --SSDSLAQRIMDCKPKVVITSNA-------------VKRGPKAIHLKDIVDAALDECAK 336
S +L I + K VITS + K I+L+D+ K
Sbjct: 698 TASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDL---------K 748
Query: 337 SGIS-VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ IS VD + + Y +D ++++
Sbjct: 749 AKISKVDKLTALLAARLLP-----------ARL--LKRLYGPT-----FKPDDTATIIFS 790
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPSDVYWCTADCGWITG-----HSY- 446
SGS G+PKGV+ + + + + F+ + DV I HS+
Sbjct: 791 SGSEGEPKGVMLSHHNIL----SNIEQISDVFNLRNDDV---------ILSSLPFFHSFG 837
Query: 447 ---VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503
+ P+L G VV+ PT D+ +V K++ TI PT +R +R N+ +
Sbjct: 838 LTVTLWLPLLEGIK-VVYHPDPT--DALGIAKLVAKHRATILLGTPTFLRLYLR--NKKL 892
Query: 504 TRYSRKSLRVLGSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--- 557
SLR++ + E + P A+ F + I + + TET +P+
Sbjct: 893 HPLMFASLRLVVAGAEKLKPEVADAFEEKFGI------RILEGYGATET-----SPVASV 941
Query: 558 -------PGAWPQ---KPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFR 606
Q K GS P GV IVD E E+ G + I P +
Sbjct: 942 NLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGG--PQVMK 999
Query: 607 TLYGDHERY-ETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVES 665
GD E+ E G+Y TGD D+DG+ +T R + G + VE
Sbjct: 1000 GYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEE 1059
Query: 666 AL--VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA 723
L + AV V E KG+ + T EEL++++ +
Sbjct: 1060 ELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGAEDV--EELKRAI---KESGLPNLWK 1114
Query: 724 PDKIHWAPGLPKTRSGKIMRRILRKIA 750
P + LP SGK+ + L+++A
Sbjct: 1115 PSRYFKVEALPLLGSGKLDLKGLKELA 1141
|
Length = 1146 |
| >gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS) | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+Y+QL ++ ++AN+L+ GV++GD V++ LP + EL AMLA ++GAV +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLT 60
Query: 293 SDSLAQRIMDCKPKVVITSN 312
L R KPK ++
Sbjct: 61 PADLRDRFSRGKPKAIVADE 80
|
MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433 |
| >gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 37/184 (20%)
Query: 226 DP-GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA--CA-RIG 281
DP GV TLT+SQL ++ +A L+ G GD +I P +E +A L A I
Sbjct: 28 DPAGVAETLTWSQLYRRTLNVAEELRRHGS-TGDRAVILAPQGLEYIVAFLGALQAGLIA 86
Query: 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
SV G + ++ + D P VV+T++AV + + V + A I V
Sbjct: 87 VPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAV-----VDDVTEYVAPQPGQSAPPVIEV 141
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
D + S P + D +L YTSGST
Sbjct: 142 D---LLDLDS------------------------PRGSDARPRDLPSTAYLQYTSGSTRT 174
Query: 402 PKGV 405
P GV
Sbjct: 175 PAGV 178
|
Length = 578 |
| >gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS) | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 7e-08
Identities = 37/201 (18%), Positives = 73/201 (36%), Gaps = 50/201 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
++Y ++ ++ + + L+ +G+K GD + I+ E I AC V ++
Sbjct: 6 ISYKEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLG 65
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
+++ + + + +V + V ++E
Sbjct: 66 EEAIEYILNETEISIVFCD--------------------------AVKV---YSFEELEE 96
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGY 412
+ ++N K ED ++YTSG+TG PKGV+ T G
Sbjct: 97 LGKKN--------------------KVPPTPPKPEDLATIMYTSGTTGNPKGVMLTHGNI 136
Query: 413 MVHTATTFKYAFDYK-PSDVY 432
+ A K ++ P+DVY
Sbjct: 137 VAGVAGINKIVPEFIGPTDVY 157
|
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539 |
| >gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A D TLTY++L ++ +LA L +G + GD V +Y + A+L
Sbjct: 6 DRPA-LVVGGD-----TLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAIL 59
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
AC + GA + + ++ +A+ + P ++
Sbjct: 60 ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALVA 94
|
DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447 |
| >gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 34/227 (14%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++L +++ L ++G+ KG V IY E ++ V + V+A
Sbjct: 121 YITYAELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANL 180
Query: 292 SSDSL--AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
D+L A R +CK I N K P + L KSG + + Y +
Sbjct: 181 GEDALAYALRETECK---AIVCNG-KNVPNLLRL-----------MKSGGMPNTTIIYLD 225
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV----DAEDPLFLLYTSGSTGKPKGV 405
+ + R + W DVV K + + + +D ++YTSG+TG PKGV
Sbjct: 226 S---LPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGV 282
Query: 406 LHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452
+HT G + T A + + +D+ + +Y +Y P+
Sbjct: 283 MHTHG-----SLTAGILALEDRLNDLIGPPEE-----DETYCSYLPL 319
|
Length = 700 |
| >gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 126/529 (23%), Positives = 192/529 (36%), Gaps = 82/529 (15%)
Query: 230 DATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288
T+TY+++ ++ Q+A L G+K GD V + L L A++G + +
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
Query: 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE 348
S SL C +V++ P+ L + V+ L G+ V Y
Sbjct: 61 TNIRSGSLLHCFRCCGARVLVAD------PE---LLEAVEEILPALRAMGVRV----FYL 107
Query: 349 NQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG---- 404
+ ++ D + VP + V +YTSG+TG PK
Sbjct: 108 SHTSPPEGVISLLAKVDAASDEPVPASL-RSGVSI---RSTALYIYTSGTTGLPKAARIS 163
Query: 405 ---VLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461
VL +G + T DV + T +G G + GA++V+
Sbjct: 164 HLRVLQCSGMLSLCGVTA---------DDVVYTTLPLYHSSGALLGIVGCIGLGATLVL- 213
Query: 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM----RDGNEYVTRYSRKSLRVLGSV 517
P + + + WD KY VT+F L+R L D + + +V ++
Sbjct: 214 --KPKF-SASQFWDDCRKYNVTVFQYIGELLRYLCNQPQSDND--------RDHKVRLAI 262
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETG-GFM-ITPLPGA-----WPQKPGSATF 570
G + P WR F G + +T+ TE GF+ T GA K
Sbjct: 263 GNGLRPDVWREFLRRFGPIH--VWETYASTEGNIGFINYTGRVGAVGRASCLYK---LLS 317
Query: 571 PFFGVQ-PVIVDEKGVEIEGEC-------SGYLCIKSSWPGAFRTLYGDHERYETT---- 618
PF ++ V DE + +G C G L K + F G E E
Sbjct: 318 PFELIKYDVEKDEPVRDAQGFCIPVGKGEPGLLISKITSQSPFLGYAGPRELTEKKLLRD 377
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
FK Y+ TGD +D+ + + R D G + T EV L E V
Sbjct: 378 VFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVATTEVADILTMVDFIQEVNV 437
Query: 679 VGVE---HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP 724
GV HE G+ A V L G +L K L VR+ + A+A P
Sbjct: 438 YGVTVPGHE--GRAGMAAVILKPG--TEFDLEK-LYQHVREFLPAYARP 481
|
Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535 |
| >gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY +L V +LA L +G+ GD V++ LP + E I A ++GA+ V A
Sbjct: 41 LTYRELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAI--PVLA 95
|
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483 |
| >gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 26/68 (38%), Positives = 34/68 (50%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
DK A+ G TY +L V ++A L +GV +GD V LP E + L
Sbjct: 39 DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYL 98
Query: 276 ACARIGAV 283
AC+RIGAV
Sbjct: 99 ACSRIGAV 106
|
Length = 547 |
| >gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 636 DKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVT 695
DKDG + GR D+++ V G + V L +P+ AAV + G+ + AF+
Sbjct: 286 DKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAV-----RLDGRRLKAFIV 340
Query: 696 LVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741
+ E EL L + + A A PD+ + LP+T +GK+
Sbjct: 341 VAEDAD-EAELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKL 385
|
This model represents the 4-coumarate--CoA ligase associated with biosynthesis of the 4-hydroxy cinnamyl (also called 4-coumaroyl) chromophore covalently linked to a Cys residue in photoactive yellow protein of Rhodobacter spp. and Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. Length = 386 |
| >gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D L+Y++ + A+ L+ +GVKKGD V + + E +A LA A++GAV +++
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINT 60
Query: 290 GFSSDSLAQRIMDCKPKVVITS 311
+ LA I + VI
Sbjct: 61 TQRGEVLAHCINVSDARAVIVD 82
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444 |
| >gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS) | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ D G +LTY +L + +LA L +G+ GD V + P E + L
Sbjct: 1 DRIALV----DGGR--SLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYL 54
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310
A R G V + + + LA + D +P +++
Sbjct: 55 AIWRAGGVAVPLNPSYPAAELAYILSDSQPSLLVD 89
|
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430 |
| >gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 5/119 (4%)
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
FT D + + G GR+DDVINVSG + EVE ++ P EA V + V G
Sbjct: 294 FTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAG 353
Query: 688 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+ + A V E + +LR+ + + + P +I +PK +GK+ R++L
Sbjct: 354 ERVKAKVISHEEID-PVQLRE----WCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLL 407
|
Length = 414 |
| >gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 37/176 (21%), Positives = 65/176 (36%), Gaps = 39/176 (22%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
LTY QL + LA ++ + + +I++ M E+ L + G H+ +
Sbjct: 25 GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG--HAYIPV 82
Query: 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYEN 349
SS A+RI + I ++ +L ++ L
Sbjct: 83 DVSSP--AERI------------------EMI--IEVAKPSLIIAT-----EELPLEILG 115
Query: 350 QSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
+T + K DI+ V +D ++++TSG+TGKPKGV
Sbjct: 116 IPVITLDELK-----DIFATGNPYD-----FDHAVKGDDNYYIIFTSGTTGKPKGV 161
|
Length = 503 |
| >gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA 289
D +LTY++L ++ +LA L+ GV V + L +L +A+LA + GA + +
Sbjct: 22 DESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVVALLAVLKAGAAYVPLDP 81
Query: 290 GFSSDSLAQRIMDCKPKVVIT 310
+ + LA + D ++V+T
Sbjct: 82 AYPPERLAYILEDAGARLVLT 102
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449 |
| >gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-06
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 625 GYYFTGD-GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCAEAAVVGVE 682
G+ TGD G D + Y +TGR+ D+I + G ++E+ + +HP A
Sbjct: 417 GWLRTGDLGFLHDGELY--VTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFS 474
Query: 683 HEVKGQG---IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP--GLPKTR 737
+ G+ + A V L +++ AV ++ G AP + LPKT
Sbjct: 475 VDGDGEERLVVVAEVRRRGLPADLAALAEAIRAAVAREHGV--APADVVLVRPGTLPKTS 532
Query: 738 SGKIMRRILRK 748
SGKI RR R+
Sbjct: 533 SGKIQRRACRE 543
|
FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547 |
| >gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 53/206 (25%), Positives = 80/206 (38%), Gaps = 50/206 (24%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG----------- 281
LTY ++ ++ + ++ GV GD IY E IAM AC G
Sbjct: 78 LTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQGITYVPLYDTLG 137
Query: 282 --AV-----HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDE 333
AV H+ V F +S I+ C PK +SN K I D+ +E
Sbjct: 138 ANAVEFIINHAEVSIAFVQESKISSILSCLPKC--SSNL-----KTIVSFGDVSSEQKEE 190
Query: 334 CAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393
+ G+S C ++E S M + + P K + D ++
Sbjct: 191 AEELGVS---CFSWEEFSLMGSLDCE---------------LPPKQK------TDICTIM 226
Query: 394 YTSGSTGKPKGVLHTTGGYMVHTATT 419
YTSG+TG+PKGV+ T + +T
Sbjct: 227 YTSGTTGEPKGVILTNRAIIAEVLST 252
|
Length = 660 |
| >gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++LL+ V +LA L++ GV+KGD V +Y+ + IA A R GAV V
Sbjct: 1 VITYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMN 60
Query: 292 SSDSLAQRIMDCKPKVVIT 310
L + D +V+I
Sbjct: 61 REAELEHILNDSGARVLIV 79
|
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430 |
| >gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 228 GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
G+ T+T+++L ++V +LA L +GVK GD V I E IA LA GAV +
Sbjct: 1 GIWQTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPI 60
Query: 288 FAGFSSDSLAQRIMDCKPKVVITSN 312
+ S + +A + D +VV +
Sbjct: 61 YPTSSPEEVAYILNDSGARVVFVED 85
|
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456 |
| >gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 53/233 (22%)
Query: 210 IEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD----------- 258
+ A D+ A + E D TY L +LAN L +GVK GD
Sbjct: 9 LRAAFADRDAPFIETPDG---LRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPE 65
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGP 318
A+ +Y LA R GAV + ++ L I D +P +V+ A
Sbjct: 66 ALALY-----------LATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWL 114
Query: 319 KAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTK 378
I A +G L + ++ D + VP+
Sbjct: 115 SKI------------AAAAGAPHVETLDADGTGSLLEAAAAAPDDF-----ETVPR---- 153
Query: 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431
A+D +LYTSG+TG+ KG + + G ++ A T + + P DV
Sbjct: 154 ------GADDLAAILYTSGTTGRSKGAMLSHGN-LLSNALTLVDYWRFTPDDV 199
|
Length = 504 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 6/127 (4%)
Query: 626 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE--- 682
+Y TGD +D DG + R+ D + T EV L + P AEA V GV+
Sbjct: 339 WYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPG 398
Query: 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAV-RKQIGAFAAPDKIHWAPGLPKTRSGKI 741
++ G+ A +TL E E K+L+ + RK++ ++A P + + T + K
Sbjct: 399 YD--GRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHKQ 456
Query: 742 MRRILRK 748
+ +LRK
Sbjct: 457 QKGVLRK 463
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
| >gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
+TY Q+ ++VC A+ L +G K + V I+ E IA+ C R ++A
Sbjct: 107 ITYGQVFERVCNFASGLVALGHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLG 166
Query: 293 SDSLAQR---------IMDCK--PKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341
++L I D K K++ S+ ++ + I++ D + + + SG S
Sbjct: 167 EEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEGVDS--DSSLSGSSN 224
Query: 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
++ + +EN V P P+ D ++YTSGSTG
Sbjct: 225 WTVSSFSEVEKLGKENP------------VDPDLPSP--------NDIAVIMYTSGSTGL 264
Query: 402 PKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432
PKGV+ T G + A +DVY
Sbjct: 265 PKGVMMTHGNIVATVAGVMTVVPKLGKNDVY 295
|
Length = 696 |
| >gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 666 ALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD 725
AL S P ++ A+ KG G+YAFV + LR L P+
Sbjct: 248 ALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELPA-DEKSLRARL-----AGAKPPKPPE 301
Query: 726 KIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALAD 777
I LP+ G + ILR IA Q+DEL D L +P + + A+A
Sbjct: 302 HIQPVAALPRDADGTVRDDILRLIAMNQIDELDD--LLREPEIRGLVEAIAA 351
|
Length = 365 |
| >gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 8e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSS 293
T+++ + +LA+ L G+ +GD V + LP + + A GAV + + +
Sbjct: 45 TWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDA 104
Query: 294 DSLAQRIMDCKPKVVIT----SNAVKR------GPKAIHLKDIVDAALDECAKSGISVDV 343
S+A + + KV+I + + GPK + + D+ D G ++D
Sbjct: 105 ASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPL-VIDVDDPEYPGGRFIG-ALD- 161
Query: 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPK 403
YE A + W D EW D + L YTSG+TG PK
Sbjct: 162 ---YEAFLASGDPDFAWT-----LPAD-----------EW----DAIALNYTSGTTGNPK 198
Query: 404 GVL-HTTGGYM 413
GV+ H G Y+
Sbjct: 199 GVVYHHRGAYL 209
|
Length = 545 |
| >gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 30/184 (16%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+TY++ L+QV +A L D+G+ ++I +E + LA G + V +
Sbjct: 25 RVTYAEALRQVRAIAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAY 84
Query: 292 S--SDSLA--QRIMD-CKPKVVITSNAVK--RGPKAIHLKDIVDAALDECAKSGISVDVC 344
S S A + I D P V + R A+ L + A+ G
Sbjct: 85 SLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVR-----GAPGGPA 139
Query: 345 LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKG 404
+ + T D V KY L+TSGSTG PK
Sbjct: 140 IAFA-ALLATPPTAAVDAAFAAVGPDTVAKY-----------------LFTSGSTGLPKA 181
Query: 405 VLHT 408
V++T
Sbjct: 182 VINT 185
|
Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559 |
| >gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
TY + ++V LA L +G++KGD V I+ P + E + A A+IGA+
Sbjct: 44 WTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAI 94
|
Length = 559 |
| >gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE) | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 5e-05
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+LT+ +L Q+V QLA L +GV++GD V + +E + LA R+GAV
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAV 52
|
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407 |
| >gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 51/207 (24%), Positives = 78/207 (37%), Gaps = 52/207 (25%)
Query: 571 PFFGVQPVIVDEKG----------VEIEGEC--SGYLCIKSSWPGAFRTLYGDHERYETT 618
P G++ +VDE G +E+ GE GYL F
Sbjct: 365 PLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLT-----MDGFIPAQDAD------ 413
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS----HPQCA 674
G+ TGD ++G + GRV DVI ++G I ++E A P A
Sbjct: 414 ------GWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNA 467
Query: 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE-----LRKSLVLAVRKQIGAFAAPDKIH- 728
A V ++ +G F VE + + +R + V ++G P +
Sbjct: 468 VA--VRLDAGHSREG---FAVAVESNAFEDPAEVRRIRHQVAHEVVAEVG--VRPRNVVV 520
Query: 729 WAPG-LPKTRSGKIMRRILRKIASRQL 754
PG +PKT SGK LR+ + +L
Sbjct: 521 LGPGSIPKTPSGK-----LRRANAAEL 542
|
Length = 545 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 39/173 (22%)
Query: 233 LTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292
LTY QL +Q +LA +++ + K +I+Y M + +A L + G + V
Sbjct: 26 LTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIP 85
Query: 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352
S+ + I P++VI + + A+ + I +AL++ SG V
Sbjct: 86 SERIEMIIEAAGPELVI--HTAELSIDAVGTQIITLSALEQAETSGGPVSF--------- 134
Query: 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGV 405
V +D +++YTSGSTG PKGV
Sbjct: 135 ----------------------------DHAVKGDDNYYIIYTSGSTGNPKGV 159
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 25/166 (15%)
Query: 197 GITNICYNCLDRNIEAGLGDKVA---IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG 253
G T I ++RNI A +GD VA + + G LT++QL ++ + L+ +
Sbjct: 33 GTTLISL--IERNI-ANVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV- 88
Query: 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA----GFSSDSLAQRIMDCKPKVVI 309
GD V I P ++ A + G + +FA G ++ L + D +P VV+
Sbjct: 89 AGPGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFAPELPG-HAERLDTALRDAEPTVVL 147
Query: 310 TSNAVK-------------RGPKAIHLKDIVDAALDECAKSGISVD 342
T+ A R P+ I + I D+A + + D
Sbjct: 148 TTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPDSAGESFVPVELDTD 193
|
Length = 612 |
| >gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+Y +L Q LA L+ G+K GD ++ L + E I A ++G V A F
Sbjct: 48 QFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVA--PVNALF 105
Query: 292 SSDSL-----AQRIMDCKPKVVITSN 312
S A +I +P ++I
Sbjct: 106 SHQRSELNAYASQI---EPALLIADR 128
|
Length = 536 |
| >gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 20/189 (10%)
Query: 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623
KP F I+DE+G + G + I P + + E+ +F
Sbjct: 322 KPDMNLF--------IMDEEGEPLPEGEKGEIVI--VGPSVSKGYLNNPEKTAEAFFS-H 370
Query: 624 PGY--YFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
G Y TGD + DG + GR+D I + G+RI ++E L A VV
Sbjct: 371 EGQPAYRTGDAGTI-TDGQLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPK 429
Query: 682 ---EHEVKGQGIYAFVTLVEGVPYSEE-LRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
+H+V + + A + E L K++ ++K + A+ P K + LP T
Sbjct: 430 YNKDHKV--EYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTA 487
Query: 738 SGKIMRRIL 746
+GKI R+ L
Sbjct: 488 NGKIDRKAL 496
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502 |
| >gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 13/158 (8%)
Query: 367 WWQDVVPKYPTKCEVEWV---------DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+W+ EW+ D ED +L+TSG+ PKGV T + +
Sbjct: 154 FWEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQR 213
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
K+ F K DV G + T P+L+G VVF P YP + +++
Sbjct: 214 ACLKF-FSPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGVP-VVFAYNPLYPK--KIVEMI 269
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
D+ KVT + P +++ + + V+G
Sbjct: 270 DEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIG 307
|
Length = 539 |
| >gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 96/446 (21%), Positives = 158/446 (35%), Gaps = 139/446 (31%)
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY--W--CTADCGWI 441
+D F+ ++SGSTG+PKGV+ T + + + A + DV+ W T D G I
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIEAIIE-AAEITSEDVFLSWMPLTHDMGLI 163
Query: 442 TGHSYVTYGPMLNGASVVVFEGAPT-----YPDSGRSW-DIVDKYKVTIFYTAPTLVRSL 495
H +T P G + + PT P W D +++ TI + P
Sbjct: 164 GFH--LT--PTALGINQYLM---PTRLFIRRPL---LWLDKASQHRATILSS-PNF---- 208
Query: 496 MRDGNEYVTRYSRK---------SLRVLGSVGEPINPSAWRWF--------------FNV 532
G +Y+ ++ + S+R++ + EPI+ F + V
Sbjct: 209 ---GYKYLLKHFKTEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPV 265
Query: 533 VG--DSRCPISDTWWQTE------------TGGFMITPLPGAWPQKPGSATF-----PFF 573
G ++ +S G +I P + +F P
Sbjct: 266 YGLAEATLAVSFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKN----SDAISFVEVGSPID 321
Query: 574 GVQPVIVDEKG----------VEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621
G + IVD+ G ++I+G+ SGY Y + E T
Sbjct: 322 GCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGY--------------YNNPE--ATKKSI 365
Query: 622 PFPGYYFTGD-GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC--AEAAV 678
G+ TGD G R +G +TGR D+I V+G ++E A
Sbjct: 366 TPDGWLKTGDLGFLR--NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAA 423
Query: 679 VGVEHEVKGQ-GIYAFV----TLVEGVPYSEELRKSL----------VLAVRKQIGAFAA 723
GV E + + FV +L + P + ++++ + V+ VR
Sbjct: 424 CGVYDEKEQSEEVVIFVEYRQSLDDFTPLALKIKRHVNKKMGLNIDHVIPVRS------- 476
Query: 724 PDKIHWAPGLPKTRSGKIMRRILRKI 749
+PKT SGKI R L +
Sbjct: 477 ---------IPKTTSGKIQRYKLAQQ 493
|
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499 |
| >gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-04
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 31/188 (16%)
Query: 224 ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
DP V+ LTY +LL L LK G+ V + LP + A G V
Sbjct: 651 VEDP-VNGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSAGRV 708
Query: 284 HSVVFAGFSSDSLAQRIMDCKP---KVVITSNA-VKRGPKAIHLKDIVDAALDECAKSGI 339
+++ FS+ +A + CK K V+TS A +++ L +++A +
Sbjct: 709 PAMI--NFSA-GIANILSACKAAQVKTVLTSRAFIEKA----RLGPLIEA---------L 752
Query: 340 SVDVCLTY-ENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGS 398
+ + Y E+ R D P D +DP +L+TSGS
Sbjct: 753 EFGIRIIYLED----VRAQIGLADKIKGLLAGRFPLVYFC----NRDPDDPAVILFTSGS 804
Query: 399 TGKPKGVL 406
G PKGV+
Sbjct: 805 EGTPKGVV 812
|
Length = 1140 |
| >gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVI-----NVSGHRIGTAEVESALVSHPQCA 674
FK ++ TGD D G+ R+ D NV+ T EVE+AL P
Sbjct: 434 FKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVA-----TTEVENALSGFPGVE 488
Query: 675 EAAVVGVE-HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733
EA V GVE G+ A + L +G + +L + +++ A+A P + P L
Sbjct: 489 EAVVYGVEVPGTDGRAGMAAIVLADGAEFD---LAALAAHLYERLPAYAVPLFVRLVPEL 545
Query: 734 PKTRSGKIMRRILRK 748
T + K + LRK
Sbjct: 546 ETTGTFKYRKVDLRK 560
|
Length = 600 |
| >gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-04
Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 35/187 (18%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIA----MLACARIGAVHSVV 287
LTY++ L++V +A L D G+ ++I L I LA G ++ V
Sbjct: 69 RLTYAEALERVRAIAQALLDRGLSAERPLMI----LSGNSIEHALLALAAMYAGVPYAPV 124
Query: 288 FAGFS--SDSLAQ--RIMD-CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342
+S S + +++ P +V + AL + + V
Sbjct: 125 SPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVVPADVEV- 172
Query: 343 VCLTYENQSAMTRENTKWQD-GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGK 401
+ R T + V + V + L+TSGSTG
Sbjct: 173 --VAVRGAVPG-RAATPFAALLATPPTAAVDAAHAA------VGPDTIAKFLFTSGSTGL 223
Query: 402 PKGVLHT 408
PK V++T
Sbjct: 224 PKAVINT 230
|
Length = 614 |
| >gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-04
Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 42/223 (18%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D++A+ + A+DPG L+Y L + +A L+ GD ++ P + A
Sbjct: 24 DRLALRFLADDPGEGVVLSYRDLDLRARTIAAALQARASF-GDRAVLLFPSGPDYVAAFF 82
Query: 276 ACARIGAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA 330
C G + + S+ + L I D +P++++T ++ + +
Sbjct: 83 GCLYAGVIAVPAYPPESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQM------EEL 136
Query: 331 LDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390
A + VD A+ WQ+ P + +D
Sbjct: 137 AAANAPELLCVDTL-----DPALAEA-----------WQE-----PA------LQPDDIA 169
Query: 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDV 431
FL YTSGST PKGV + G +V ++ F D P DV
Sbjct: 170 FLQYTSGSTALPKGV-QVSHGNLVANEQLIRHGFGIDLNPDDV 211
|
Length = 4334 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 38/131 (29%)
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE-CSGYLCIKSSWPGAFRTLYGDHERYE 616
PGA +PGS P VQ I ++ + + G GYL G+
Sbjct: 282 PGA--DRPGSVGKPLPHVQVSIANDGEILVRGSLMLGYL--------------GEPPAT- 324
Query: 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVI------NVSGHRIGTAE-VESALVS 669
++ TGD D++GY ++ GR ++I NVS E VES L
Sbjct: 325 -------DDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNVS------PEWVESELQQ 371
Query: 670 HPQCAEAAVVG 680
P A+A V G
Sbjct: 372 APAIAQAVVFG 382
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL) | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 57/180 (31%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291
+L+Y QL Q+V LA L+ +GVK + + L ++ IA LAC + G V + F
Sbjct: 2 SLSYQQLWQEVDLLAEQLRALGVK---RIALALDNSIDWVIADLACLQAGIVCIPIPHFF 58
Query: 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT-YENQ 350
S+ HL L++ D+ ++ +
Sbjct: 59 SAQQTQ------------------------HL-------LNDAG-----ADLLISDDPDA 82
Query: 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF-----LLYTSGSTGKPKGV 405
++ L + YTSGSTG+PKGV
Sbjct: 83 ASALHTPFATLGEDLYIALRPSA------------NPVELPAGTAKITYTSGSTGQPKGV 130
|
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448 |
| >gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL) | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 204 NC----LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYL-KDIGVKKGD 258
NC LDR++ G G++ + T TY LL + ++A+ L +D+GV G+
Sbjct: 34 NCAAELLDRHVHNGRGNRPCFR------TFEETWTYQDLLDRANRIAHVLVEDLGVVPGN 87
Query: 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 303
V++ L LA + GA+ + L I+D
Sbjct: 88 RVLLRSANTPMLVACWLAVLKAGAIVVTTMPLLRAKELTT-IVDK 131
|
ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487 |
| >gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260
GD+ + + G TY+ ++V +LAN L+ +GVK GD V
Sbjct: 10 GDREIVSRTPD--GSIHRYTYADFYRRVRRLANALESLGVKPGDRV 53
|
This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 232 TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287
+ TY Q+ + LA+YL G+K+GD V+IY ++L +A++ + GA SV+
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYAYRGVDLVVAVMGVLKAGATFSVI 325
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283
+TY +L + LA +L+ G+ KG V I +P +++ P+A+ A R G V
Sbjct: 46 GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLRAGYV 99
|
Length = 557 |
| >gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 51/204 (25%)
Query: 232 TLTYSQLLQQVCQLANYL-KDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV------- 283
T+TY + Q V Q A YL ++ +KKGD V + +P ++ PIA R G
Sbjct: 50 TITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPL 109
Query: 284 -------HSVVFAGFSS--------DSLAQRIMDCKPKVVITSNA--VKRGPKAIHLKDI 326
H ++ +G S ++ Q I D K VIT+ + PKA +
Sbjct: 110 YTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKA----AL 165
Query: 327 VDAALDECAK--SGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWV 384
V+ + K ++ + + A+ R+++ +P +
Sbjct: 166 VNFVVKYVKKLVPEYRINGAIRFREALALGRKHS-------------MPTLQ-------I 205
Query: 385 DAEDPLFLLYTSGSTGKPKGVLHT 408
+ +D FL YT G+TG KG + T
Sbjct: 206 EPDDIAFLQYTGGTTGVAKGAMLT 229
|
Length = 560 |
| >gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.004
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434
VD +DP L+YTSG+TG PKG + +V + P Y C
Sbjct: 84 VDPDDPAALIYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTC 134
|
Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| PLN02654 | 666 | acetate-CoA ligase | 100.0 | |
| COG0365 | 528 | Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l | 100.0 | |
| KOG1175 | 626 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| TIGR02188 | 625 | Ac_CoA_lig_AcsA acetate--CoA ligase. This model de | 100.0 | |
| PRK00174 | 637 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR02316 | 628 | propion_prpE propionate--CoA ligase. This family c | 100.0 | |
| PTZ00237 | 647 | acetyl-CoA synthetase; Provisional | 100.0 | |
| PRK10524 | 629 | prpE propionyl-CoA synthetase; Provisional | 100.0 | |
| TIGR01217 | 652 | ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym | 100.0 | |
| PRK03584 | 655 | acetoacetyl-CoA synthetase; Provisional | 100.0 | |
| PLN03052 | 728 | acetate--CoA ligase; Provisional | 100.0 | |
| KOG1176 | 537 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| PRK04319 | 570 | acetyl-CoA synthetase; Provisional | 100.0 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| KOG1177 | 596 | consensus Long chain fatty acid acyl-CoA ligase [L | 100.0 | |
| PRK12467 | 3956 | peptide synthase; Provisional | 100.0 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| PRK12316 | 5163 | peptide synthase; Provisional | 100.0 | |
| COG0318 | 534 | CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l | 100.0 | |
| PRK07788 | 549 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05691 | 4334 | peptide synthase; Validated | 100.0 | |
| PRK07529 | 632 | AMP-binding domain protein; Validated | 100.0 | |
| PRK06060 | 705 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13295 | 547 | cyclohexanecarboxylate-CoA ligase; Reviewed | 100.0 | |
| PLN02860 | 563 | o-succinylbenzoate-CoA ligase | 100.0 | |
| PLN02736 | 651 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK06334 | 539 | long chain fatty acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02574 | 560 | 4-coumarate--CoA ligase-like | 100.0 | |
| PRK13382 | 537 | acyl-CoA synthetase; Provisional | 100.0 | |
| PLN02246 | 537 | 4-coumarate--CoA ligase | 100.0 | |
| PRK05852 | 534 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02614 | 666 | long-chain acyl-CoA synthetase | 100.0 | |
| PRK05677 | 562 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07656 | 513 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08314 | 546 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03208 | 538 | cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. | 100.0 | |
| PRK06839 | 496 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12583 | 558 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK05857 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09274 | 552 | peptide synthase; Provisional | 100.0 | |
| PRK05605 | 573 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02861 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK06145 | 497 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1021 | 542 | EntE Peptide arylation enzymes [Secondary metaboli | 100.0 | |
| PRK07769 | 631 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK07638 | 487 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08316 | 523 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06087 | 547 | short chain acyl-CoA synthetase; Reviewed | 100.0 | |
| TIGR02275 | 527 | DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot | 100.0 | |
| PRK06155 | 542 | crotonobetaine/carnitine-CoA ligase; Provisional | 100.0 | |
| PRK07470 | 528 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK05620 | 576 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK13390 | 501 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06187 | 521 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK08008 | 517 | caiC putative crotonobetaine/carnitine-CoA ligase; | 100.0 | |
| PRK07514 | 504 | malonyl-CoA synthase; Validated | 100.0 | |
| PRK03640 | 483 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08315 | 559 | AMP-binding domain protein; Validated | 100.0 | |
| PRK08043 | 718 | bifunctional acyl-[acyl carrier protein] synthetas | 100.0 | |
| PRK07008 | 539 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR02262 | 508 | benz_CoA_lig benzoate-CoA ligase family. Character | 100.0 | |
| PRK05851 | 525 | long-chain-fatty-acid--[acyl-carrier-protein] liga | 100.0 | |
| PLN02330 | 546 | 4-coumarate--CoA ligase-like 1 | 100.0 | |
| TIGR03098 | 515 | ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor | 100.0 | |
| PRK12476 | 612 | putative fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK07786 | 542 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK10946 | 536 | entE enterobactin synthase subunit E; Provisional | 100.0 | |
| PRK09088 | 488 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN03102 | 579 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK13388 | 540 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK12492 | 562 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PTZ00342 | 746 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK06710 | 563 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK06178 | 567 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01734 | 502 | D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig | 100.0 | |
| PRK06188 | 524 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK06018 | 542 | putative acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08279 | 600 | long-chain-acyl-CoA synthetase; Validated | 100.0 | |
| PRK07059 | 557 | Long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| TIGR03205 | 541 | pimA dicarboxylate--CoA ligase PimA. PimA, a membe | 100.0 | |
| PLN02387 | 696 | long-chain-fatty-acid-CoA ligase family protein | 100.0 | |
| PRK06164 | 540 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07867 | 529 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK13383 | 516 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08751 | 560 | putative long-chain fatty acyl CoA ligase; Provisi | 100.0 | |
| PLN03051 | 499 | acyl-activating enzyme; Provisional | 100.0 | |
| PRK07787 | 471 | acyl-CoA synthetase; Validated | 100.0 | |
| PLN02430 | 660 | long-chain-fatty-acid-CoA ligase | 100.0 | |
| PRK13391 | 511 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK04813 | 503 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 100.0 | |
| PTZ00216 | 700 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK08180 | 614 | feruloyl-CoA synthase; Reviewed | 100.0 | |
| PRK07798 | 533 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK08276 | 502 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PLN02479 | 567 | acetate-CoA ligase | 100.0 | |
| PRK07445 | 452 | O-succinylbenzoic acid--CoA ligase; Reviewed | 100.0 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 100.0 | |
| PRK08974 | 560 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| PRK12582 | 624 | acyl-CoA synthetase; Provisional | 100.0 | |
| PRK09192 | 579 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK12406 | 509 | long-chain-fatty-acid--CoA ligase; Provisional | 100.0 | |
| PRK05850 | 578 | acyl-CoA synthetase; Validated | 100.0 | |
| PRK09029 | 458 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PRK08162 | 545 | acyl-CoA synthetase; Validated | 100.0 | |
| COG1022 | 613 | FAA1 Long-chain acyl-CoA synthetases (AMP-forming) | 100.0 | |
| PRK08308 | 414 | acyl-CoA synthetase; Validated | 100.0 | |
| TIGR01923 | 436 | menE O-succinylbenzoate-CoA ligase. This model rep | 100.0 | |
| PRK07768 | 545 | long-chain-fatty-acid--CoA ligase; Validated | 100.0 | |
| KOG1256 | 691 | consensus Long-chain acyl-CoA synthetases (AMP-for | 100.0 | |
| PF00501 | 417 | AMP-binding: AMP-binding enzyme; InterPro: IPR0008 | 100.0 | |
| KOG1180 | 678 | consensus Acyl-CoA synthetase [Lipid transport and | 100.0 | |
| COG1020 | 642 | EntF Non-ribosomal peptide synthetase modules and | 100.0 | |
| TIGR01733 | 408 | AA-adenyl-dom amino acid adenylation domain. This | 100.0 | |
| KOG1179 | 649 | consensus Very long-chain acyl-CoA synthetase/fatt | 100.0 | |
| PRK07824 | 358 | O-succinylbenzoic acid--CoA ligase; Provisional | 100.0 | |
| PTZ00297 | 1452 | pantothenate kinase; Provisional | 100.0 | |
| TIGR02372 | 386 | 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv | 100.0 | |
| TIGR02155 | 422 | PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet | 100.0 | |
| KOG1178 | 1032 | consensus Non-ribosomal peptide synthetase/alpha-a | 100.0 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 99.97 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.97 | |
| TIGR03089 | 227 | conserved hypothetical protein TIGR03089. This pro | 99.94 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 99.93 | |
| PRK09188 | 365 | serine/threonine protein kinase; Provisional | 99.9 | |
| KOG3628 | 1363 | consensus Predicted AMP-binding protein [General f | 99.75 | |
| TIGR02304 | 430 | aden_form_hyp probable adenylate-forming enzyme. M | 99.7 | |
| PF13193 | 73 | AMP-binding_C: AMP-binding enzyme C-terminal domai | 99.42 | |
| PF04443 | 365 | LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR | 98.8 | |
| PF03321 | 528 | GH3: GH3 auxin-responsive promoter; InterPro: IPR0 | 98.46 | |
| PLN02249 | 597 | indole-3-acetic acid-amido synthetase | 97.66 | |
| PLN02247 | 606 | indole-3-acetic acid-amido synthetase | 97.61 | |
| PF14535 | 96 | AMP-binding_C_2: AMP-binding enzyme C-terminal dom | 97.55 | |
| PLN02620 | 612 | indole-3-acetic acid-amido synthetase | 97.4 | |
| PF13745 | 91 | HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A. | 94.17 | |
| COG1541 | 438 | PaaK Coenzyme F390 synthetase [Coenzyme metabolism | 93.13 | |
| TIGR03335 | 445 | F390_ftsA coenzyme F390 synthetase. This enzyme, c | 81.27 |
| >PLN02654 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-102 Score=920.55 Aligned_cols=656 Identities=90% Similarity=1.513 Sum_probs=566.8
Q ss_pred CCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCc-ccccccccccCCCcccccCCCCcccH
Q 004034 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQ-RVCSENLDVRKGNVKIEWFKGGITNI 201 (778)
Q Consensus 123 ~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wf~~~~~n~ 201 (778)
+..+.++++.|+..+..+++.+|+++++++++||+.||.++++.+.|.++++. .++..+.+++.++++++||+++++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~wf~g~~~N~ 89 (666)
T PLN02654 10 ENDLVFPSKDFSAQALVSSPQQYMEMYKRSVDDPAGFWSDIASQFYWKQKWEGDEVCSENLDVRKGPISIEWFKGGKTNI 89 (666)
T ss_pred cCcccCCCHHHHhhccCCCHHHHHHHHHHHhcCHHHHHHHHHHhCCeecCCCcceEeccCCCcccCCccccccCCCEeeH
Confidence 33456899999998888888999999999999999999999988999988742 24422333444445679999999999
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
++++|+++++..+|+++|+++..++.+..+++||+||.++++++|+.|+++|+++||+|+|++||++|+++++|||+++|
T Consensus 90 ~~~~l~~~~~~~~~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~pn~~e~v~a~lA~~~~G 169 (666)
T PLN02654 90 CYNCLDRNVEAGNGDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKDVGVKKGDAVVIYLPMLMELPIAMLACARIG 169 (666)
T ss_pred HHHHHHHhhccCCCCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 99999999862489999999865444556899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.++|++++|++||+++...+..+.+.++..++.++.........+..++.++...........+.
T Consensus 170 av~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (666)
T PLN02654 170 AVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQLAMKREDTKWQ 249 (666)
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEecccccccccccccc
Confidence 99999999999999999999999999999999888888888888887766543111122233343332211000012223
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
..++.+|++.+...+...+...+.++|++||+|||||||+||||+++|++++......+...++++++|++++.+|++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 329 (666)
T PLN02654 250 EGRDVWWQDVVPNYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAFDYKPTDVYWCTADCGWI 329 (666)
T ss_pred cCCcccHHHHhhcCCCCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhcCCCCCcEEEEcCCchhh
Confidence 33455666665443333344557889999999999999999999999999877766667778999999999999999999
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
+|+.+.++++|+.|++++++++.+.++++..+|++|++++||+++++|++++.|++...+.....++++||.++++||++
T Consensus 330 ~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l 409 (666)
T PLN02654 330 TGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPI 409 (666)
T ss_pred hhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCC
Confidence 99888899999999999999987777899999999999999999999999999998765434566889999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCC
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~ 601 (778)
++++++|+.+.+|..++++.+.||+||+++..+...++..+.+++++|+|++|++++|+|++|++++.++.|||+|++||
T Consensus 410 ~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~ 489 (666)
T PLN02654 410 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSW 489 (666)
T ss_pred CHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCC
Confidence 99999999999986668999999999999876655444345678999999999999999999999999999999999999
Q ss_pred CcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEE
Q 004034 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 681 (778)
|++++|||++++++...|+...+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.||+|+++
T Consensus 490 p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~ 569 (666)
T PLN02654 490 PGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGI 569 (666)
T ss_pred chhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEee
Confidence 99999999999999999887778999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCC
Q 004034 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 761 (778)
Q Consensus 682 ~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~ 761 (778)
+++..++.+++||+++++...++++.++|+++|+++|+.|++|+.|+++++||+|+||||+|+.|++++.++..++++.+
T Consensus 570 ~d~~~ge~~~a~Vvl~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~~~~~~~~~ 649 (666)
T PLN02654 570 EHEVKGQGIYAFVTLVEGVPYSEELRKSLILTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTS 649 (666)
T ss_pred EcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcCCCCCCCCcc
Confidence 99988999999999998876667788899999999999999999999999999999999999999999987544678999
Q ss_pred CCCChhhHHHHHhhhcC
Q 004034 762 TLADPGVVDQLIALADC 778 (778)
Q Consensus 762 ~~~~~~~~~~~~~~~~~ 778 (778)
|++||+++++++++++.
T Consensus 650 ~~~~~~~~~~~~~~~~~ 666 (666)
T PLN02654 650 TLADPGVVDQLIALADS 666 (666)
T ss_pred cccCHHHHHHHHHhhcC
Confidence 99999999999998863
|
|
| >COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-100 Score=849.28 Aligned_cols=521 Identities=47% Similarity=0.773 Sum_probs=484.8
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMEL 270 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~ 270 (778)
+||.++.+|.++|+++++.+...+|++|++|.+++.+. +++||+||.++++++|+.|++ .|| +||||+|+||+.+|+
T Consensus 1 ~wf~~~~lN~~~n~~dr~~~~~~~~~~aii~~~e~~~~-~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~ 78 (528)
T COG0365 1 KWFEGGTLNLALNALDRHLEADRPDDTAIIFDGEDGLF-RELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEA 78 (528)
T ss_pred CCcCCceeechhhhhhhhhhccCCCceEEEEEcCCCCc-eEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHH
Confidence 59999999999999999987456899999999776444 999999999999999999987 578 999999999999999
Q ss_pred HHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccC
Q 004034 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 271 vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 350 (778)
+++||||+|+||+++|+++.++++.++++++++++|+||+++...++++.+.++..+++++.. ++++++.
T Consensus 79 ~~a~LA~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~----------~iv~~r~ 148 (528)
T COG0365 79 VIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSS----------VVVVPRL 148 (528)
T ss_pred HHHHHHHHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcc----------eEEeccc
Confidence 999999999999999999999999999999999999999999999999999998887775432 4444432
Q ss_pred CccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCc
Q 004034 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430 (778)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d 430 (778)
. ++|++.++..+..++....+++|++||+|||||||+||||+|+|++++.......+..+++.++|
T Consensus 149 ~--------------~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~D 214 (528)
T COG0365 149 G--------------LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGD 214 (528)
T ss_pred c--------------ccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCC
Confidence 1 66788887777777777799999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCc
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~s 510 (778)
++++.++++|++|+.+.+|++|++|+|++++++.+.+ +++++|++|++|+||.++++|++++.|++.+. ..++++++
T Consensus 215 v~w~~ad~GW~~g~~~~v~~pL~~Gat~~~~eg~p~~-~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~--~~~~dlss 291 (528)
T COG0365 215 RFWNSSDPGWIYGLWYSVFSPLASGATTVLYDGRPFY-SPERLWEALEKYKVTIFGTSPTFLRRLMKLGL--GEPYDLSS 291 (528)
T ss_pred EEEeCCCchhhhCchHHHHHHHhcCCeEEEeCCCCCC-CHHHHHHHHHHhCCceEeeCHHHHHHHHhcCC--cccccchh
Confidence 9999999999999999999999999999999999888 89999999999999999999999999999986 67789999
Q ss_pred eeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCC
Q 004034 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (778)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g 590 (778)
||.+.+.||||++++|+|+.+.+| ++|.+.||+||++++.+...+ +.++++.|+|+||+++.|+|++|+++++|
T Consensus 292 Lr~~~SaGEPLnpe~~~w~~~~~g---~~i~d~~gqTEtg~~~~~~~~---~~~~g~~g~p~pG~~~~vvdd~g~~~~~~ 365 (528)
T COG0365 292 LRVLGSAGEPLNPEAFEWFYSALG---VWILDIYGQTETGMGFIAGRP---PVKNGSSGLPLPGYAVRRVDDEGNPVPPG 365 (528)
T ss_pred heeeeccCCCCCHHHHHHHHHHhC---CCEeccccccccCccccCCCC---CcCCCCCCCCCCCceeEEECCCCCcCCCC
Confidence 999999999999999999999998 899999999999966665544 45666679999999999999999999999
Q ss_pred eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 591 ~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+ |+|+|+.|||+++++||+|+++|.+.|+.. ||+|||.+++|+||++||+||.||+||++|+||+|.|||++|.+|
T Consensus 366 ~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~---~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~h 441 (528)
T COG0365 366 V-GELVVRLPWPGMALTYWNDPERYKEAYFGR---WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAH 441 (528)
T ss_pred c-eEEEEeCCCchhhhhhhCCHHHHHHHHhhc---eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhC
Confidence 9 999999999999999999999999999863 999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 750 (778)
|+|.||+||+++|+.+|+.++|||+++++...+ +++++|++++++.+.+++.|+.|+++++||||+||||+|+.||+++
T Consensus 442 P~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~-~L~~ei~~~vr~~~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~ 520 (528)
T COG0365 442 PAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN-ELAEEIRRHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKIL 520 (528)
T ss_pred cceeeeEEEeccCCCCCcEEEEEEEecCCCChH-HHHHHHHHHHHhccCcccCCceEEEecCCCCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999998877 9999999999999988999999999999999999999999999998
Q ss_pred hc
Q 004034 751 SR 752 (778)
Q Consensus 751 ~~ 752 (778)
.+
T Consensus 521 ~~ 522 (528)
T COG0365 521 HK 522 (528)
T ss_pred hh
Confidence 73
|
|
| >KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-97 Score=827.11 Aligned_cols=614 Identities=57% Similarity=0.943 Sum_probs=561.9
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEE
Q 004034 141 SPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (778)
Q Consensus 141 ~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (778)
...+|+.+++++++||+.||.+++++++|...+.. . +.....+...++||+++.+|.++|+++++.....+|++|+
T Consensus 9 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~w~~g~~ln~~~n~~~~~~~~~~~~~~a~ 84 (626)
T KOG1175|consen 9 SLSSYREFYRFSVEDPERFWGEVAKELHWKFPWPR-C---NKDENKGNPFTKWFPGAFLNACYNCLDRHIKEKGGDKVAI 84 (626)
T ss_pred CHHHHHHHHhhcccCHHHHHHHhhhhhhcccCccc-c---ccccccCCCCccccccchhhhhHhhhhhhhhhcCCCCcEE
Confidence 47899999999999999999999888777666552 1 1122333445799999999999999999977445999999
Q ss_pred EEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHH
Q 004034 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (778)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l 300 (778)
++.....+....+||.||.+++.++|..|++.|+++||+|+++||+.+|++++||||+++|++++++..++++..+..+|
T Consensus 85 ~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~~g~~kGD~V~~~mPm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl 164 (626)
T KOG1175|consen 85 IFEGNEGGDTEVWTYKELLDQVVRLANVLRKCGLKKGDTVAIYMPMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRL 164 (626)
T ss_pred EEEecCCCceEEEEHHHHHHHHHHHHHHHHhcCCCCCcEEEEeccCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHH
Confidence 99988776667799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCC
Q 004034 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380 (778)
Q Consensus 301 ~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 380 (778)
+++++|+|+|.+...+..+.+.++..+++++..+..........+.+.+. .++++|+..+....+..+
T Consensus 165 ~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~~d~~~~~~~~~a~~~~~ 232 (626)
T KOG1175|consen 165 QDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLDLIVSRR------------NRDLFWSLELKKASPEHP 232 (626)
T ss_pred HhcCCCEEEEEeeeccCCCccchhhhHHHHhhcccccccccceeeEEecc------------cccccHHHHhhhcCCCCC
Confidence 99999999999999999999999999988877663222222223333222 137788888888888888
Q ss_pred ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 381 ~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
+.+.+.+|+.||+|||||||.|||+.|++++++...+...+..++++++|+++++++++|++|+.+.++++|++|+|+++
T Consensus 233 ~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~d~q~~dv~~~~~d~GWi~g~~~~~~gpl~~Ga~~vl 312 (626)
T KOG1175|consen 233 CVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHFDLQPSDVLWCASDLGWITGHSYVLYGPLLNGATVVL 312 (626)
T ss_pred ceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceeccCCCcceEEEecccCeeeccchhhhhhhhcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i 540 (778)
+++.+. ++..+|+++.+|+||++++.|++++.|.+........+++++||.+.++||++.++.++|+.+.++. .+|
T Consensus 313 ~~g~p~--~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~--~pv 388 (626)
T KOG1175|consen 313 YEGPPF--DPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPINPEAWEWWKRVTGL--DPI 388 (626)
T ss_pred EcCCCC--ChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccCCcchHHHHHHhcCc--cch
Confidence 998765 9999999999999999999999999999888776777777889999999999999999999999985 279
Q ss_pred ecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCC-eeeEEEEecCCC-cccccccCChhhhhhh
Q 004034 541 SDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGE-CSGYLCIKSSWP-GAFRTLYGDHERYETT 618 (778)
Q Consensus 541 ~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g-~~GEL~v~g~~p-~v~~gY~~~~~~~~~~ 618 (778)
++.||+||+|+.++...++..+.++++++.|++|+.+.|+|++|++++++ +.|+|+++.||| +++++||+|+++|...
T Consensus 389 ~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~ 468 (626)
T KOG1175|consen 389 YETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAA 468 (626)
T ss_pred hhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhh
Confidence 99999999999988877766578999999999999999999999999987 899999999999 9999999999999999
Q ss_pred ccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
||.+++|+|+|||.+++|+||++|++||+||+|+++|+||+++|||++|.+||.|.|++||+.+|+.+||.++|||++++
T Consensus 469 yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~ 548 (626)
T KOG1175|consen 469 YFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKS 548 (626)
T ss_pred hcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHHHHhhh
Q 004034 699 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALA 776 (778)
Q Consensus 699 ~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (778)
+....+++.++|+++||+.+.+++.|+.|++++.||+|+||||+||+||+++.++ ++++++|++||++++.+++..
T Consensus 549 g~~~~~~L~kel~~~VR~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~--~~~d~st~~dp~v~~~~~~~~ 624 (626)
T KOG1175|consen 549 GSHDPEQLTKELVKHVRSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK--AVGDTSTLADPSVIDHLRSIL 624 (626)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccccceeEecCCCCccccchhHHHHHHHHhccC--ccccccccCChHHHHHHHHhh
Confidence 9888899999999999999999999999999999999999999999999999988 789999999999999999864
|
|
| >TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-96 Score=863.78 Aligned_cols=618 Identities=61% Similarity=1.100 Sum_probs=544.7
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHhh-cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEE
Q 004034 142 PQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (778)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (778)
+++|+++++++++||+.||.+++++ +.|.++|.+ +++.. .+.+.+||+++++|+++++|+++++ .+||++|+
T Consensus 4 ~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~Al 76 (625)
T TIGR02188 4 LEQYKELYEESIEDPDKFWAKLARELLDWFKPFTK-VLDWS-----FPPFYKWFVGGELNVSYNCVDRHLE-ARPDKVAI 76 (625)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhcCceecCCce-eecCC-----CCCCCeeCCCCEEEHHHHHHHHhhc-cCCCCeEE
Confidence 6899999999999999999999987 889998887 54211 1224699999999999999999998 89999999
Q ss_pred EEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHH
Q 004034 221 YWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRI 300 (778)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l 300 (778)
++.+++.+..+++||+||+++++++|+.|+++|+++||+|+|+++|++|+++++|||+++|++++|++|+++.+++.+++
T Consensus 77 ~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~i~~~~~~~~l~~~l 156 (625)
T TIGR02188 77 IWEGDEPGEVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRI 156 (625)
T ss_pred EEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHH
Confidence 99765334568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCC-CccEEEEEccCCccccccccCCCCcccchhhccCCCCCCC
Q 004034 301 MDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (778)
Q Consensus 301 ~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (778)
++++++++|+++...+..+.+.++..+++++..+ + .++.+++++.... ...+....+.+|++.+.......
T Consensus 157 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 228 (625)
T TIGR02188 157 NDAGAKLVITADEGLRGGKVIPLKAIVDEALEKC----PVSVEHVLVVRRTGN----PVPWVEGRDVWWHDLMAKASAYC 228 (625)
T ss_pred HhcCCCEEEEcCccccCCcccchHHHHHHHHHhC----CCCccEEEEEcCCCC----CcCccccccccHHHHHhhcCCCC
Confidence 9999999999998888888888888887776654 3 4666666654321 11222334556666655444344
Q ss_pred CccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEE
Q 004034 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 380 ~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlv 459 (778)
++....++++++|+|||||||+||||+++|++++.+........+++.++|++++.++++|++++.+.++++|.+|++++
T Consensus 229 ~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~v 308 (625)
T TIGR02188 229 EPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVFDIKDGDIFWCTADVGWITGHSYIVYGPLANGATTV 308 (625)
T ss_pred CceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhccCCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEE
Confidence 45567889999999999999999999999999877666666777899999999999999999998888999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcc
Q 004034 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (778)
Q Consensus 460 l~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (778)
++++.+..+++..++++|+++++|+++++|++++.|.+.......+.++++||.++++||++++++++++.+.++..+++
T Consensus 309 l~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~ 388 (625)
T TIGR02188 309 MFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCP 388 (625)
T ss_pred EECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCc
Confidence 99887777799999999999999999999999999998765444456789999999999999999999999999866689
Q ss_pred eecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeC-CCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 540 ISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 540 i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~-~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
+++.||+||+++.++...++..+.+++++|+|++|++++|+|++|++++ .|+.|||+|++|||++++|||++++++...
T Consensus 389 i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~ 468 (625)
T TIGR02188 389 IVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDT 468 (625)
T ss_pred eEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHH
Confidence 9999999999987665544433467889999999999999999999999 899999999999999999999999999999
Q ss_pred ccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
|+...+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.||+|++++++..++.++|||++++
T Consensus 469 ~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~ 548 (625)
T TIGR02188 469 YFSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKD 548 (625)
T ss_pred HhccCCCEEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCC
Confidence 88777899999999999999999999999999999999999999999999999999999999999988999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHHHHh
Q 004034 699 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774 (778)
Q Consensus 699 ~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (778)
+...++++.++|+++++++|+++++|+.|+++++||+|+||||+|+.|++++.++....++.++++||++++++++
T Consensus 549 ~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 624 (625)
T TIGR02188 549 GYEPDDELRKELRKHVRKEIGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEEEILGDTSTLEDPSVVEELIE 624 (625)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCcccccCHHHHHHHHh
Confidence 7766666788999999999999999999999999999999999999999998865333678999999999999975
|
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501. |
| >PRK00174 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-94 Score=849.26 Aligned_cols=626 Identities=61% Similarity=1.079 Sum_probs=541.8
Q ss_pred hhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhc
Q 004034 133 FSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEA 212 (778)
Q Consensus 133 f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~ 212 (778)
|...+.. .+++|++++++++++|++||.++++++.|.++|++ +++. .+.+.+||+++.+|.++++|+++++
T Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~------~~~~~~w~~~~~~n~~~~~l~~~~~- 78 (637)
T PRK00174 8 FAANALI-DMEQYKALYQESVEDPEGFWAEQAKRLDWFKPFDT-VLDW------NAPFIKWFEDGELNVSYNCLDRHLK- 78 (637)
T ss_pred HHhhcCC-ChHHHHHHHHHHhcCHHHHHHHHHHhcCeecCCcc-cccC------CCCCCccCCCCEeEHHHHHHHHhhc-
Confidence 3333444 36899999999999999999999877999999887 5422 2235699999999999999999998
Q ss_pred cCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCC
Q 004034 213 GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292 (778)
Q Consensus 213 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~ 292 (778)
++||++|+++.+++.+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 79 ~~p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~l~~~~~ 158 (637)
T PRK00174 79 TRGDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKSLGVKKGDRVAIYMPMIPEAAVAMLACARIGAVHSVVFGGFS 158 (637)
T ss_pred cCCCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCCCCC
Confidence 89999999987543334678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhcc
Q 004034 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372 (778)
Q Consensus 293 ~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l 372 (778)
.+++.+++++++++++|+++...+..+.+.+...+.+.+..+ +.++.+++++.... ...+....+.+|++..
T Consensus 159 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 230 (637)
T PRK00174 159 AEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANC----PSVEKVIVVRRTGG----DVDWVEGRDLWWHELV 230 (637)
T ss_pred HHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhC----CCccEEEEEcCCCC----CcCcCCCCcccHHHHH
Confidence 999999999999999999988777777777777776665544 45566666554321 1122223445566655
Q ss_pred CCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHH
Q 004034 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452 (778)
Q Consensus 373 ~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L 452 (778)
.......+.....++|++||+|||||||+||||+++|++++.+........+++.++|++++.++++|+.++.+.++.+|
T Consensus 231 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l 310 (637)
T PRK00174 231 AGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVFDYKDGDVYWCTADVGWVTGHSYIVYGPL 310 (637)
T ss_pred hhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhccCCCCCcEEEEcCCchHhhhhHHHHHHHH
Confidence 44333344455678999999999999999999999999977666666666789999999999999999999888899999
Q ss_pred hcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHH
Q 004034 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532 (778)
Q Consensus 453 ~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 532 (778)
++|++++++++.+..+++..++++|++++||++.++|++++.|++.........++++||.++++||++++++++++.+.
T Consensus 311 ~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~ 390 (637)
T PRK00174 311 ANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKV 390 (637)
T ss_pred HcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHH
Confidence 99999999987766778999999999999999999999999998875433344578899999999999999999999999
Q ss_pred hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCCh
Q 004034 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDH 612 (778)
Q Consensus 533 ~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~ 612 (778)
++..++++++.||+||+++..+...++....+++++|+|++|++++|+|++|++++.|+.|||+|+||+|++++|||+++
T Consensus 391 ~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~ 470 (637)
T PRK00174 391 VGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDH 470 (637)
T ss_pred hCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCH
Confidence 88656899999999999986654443333446788999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEE
Q 004034 613 ERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692 (778)
Q Consensus 613 ~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 692 (778)
+++.+.++...+|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++|
T Consensus 471 ~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a 550 (637)
T PRK00174 471 ERFVKTYFSTFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYA 550 (637)
T ss_pred HHHHHhhhcCCCCEEECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEE
Confidence 99999988767899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHHH
Q 004034 693 FVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772 (778)
Q Consensus 693 ~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (778)
||++.++...++++.++|+++++++|+.|++|..|+++++||+|+|||++|+.|+++..+.. ..++.++++||++++++
T Consensus 551 ~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~-~~~~~~~~~~~~~~~~~ 629 (637)
T PRK00174 551 FVTLKGGEEPSDELRKELRNWVRKEIGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE-ILGDTSTLADPSVVEKL 629 (637)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC-CCCCcccccCHHHHHHH
Confidence 99998876555666789999999999999999999999999999999999999999987653 46789999999999999
Q ss_pred Hhhh
Q 004034 773 IALA 776 (778)
Q Consensus 773 ~~~~ 776 (778)
++..
T Consensus 630 ~~~~ 633 (637)
T PRK00174 630 IEAR 633 (637)
T ss_pred HHHH
Confidence 9864
|
|
| >TIGR02316 propion_prpE propionate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-93 Score=840.51 Aligned_cols=614 Identities=39% Similarity=0.711 Sum_probs=526.9
Q ss_pred HHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEE
Q 004034 144 KYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWE 223 (778)
Q Consensus 144 ~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~ 223 (778)
+|.++++++++||+.||.++++.+.|.+++++ +++.+ ...+.+||.++.+|.++++|+++++ .+|+++|+++.
T Consensus 2 ~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~Al~~~ 74 (628)
T TIGR02316 2 RYEEFYQRSIEQPEAFWAEQARRIDWQTPPQR-ILDYS-----NPPFARWFAGGRTNLCHNALDRHLD-ERGEQLALVTV 74 (628)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHhCCeecCCcc-cccCC-----CCCcCccCCCCEeeHHHHHHHHHhC-cCCCCeEEEEE
Confidence 48899999999999999999988999999887 54211 2234699999999999999999987 89999999986
Q ss_pred cCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhc
Q 004034 224 ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC 303 (778)
Q Consensus 224 ~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~ 303 (778)
+.+.+..+++||+||+++++++|++|+++||++||+|+|+++|++|+++++|||+++|++++|+++.++.+++.++|+++
T Consensus 75 ~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~n~~e~v~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~ 154 (628)
T TIGR02316 75 SSETGQERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAIHSVVFGGFASHSLALRIDDA 154 (628)
T ss_pred cCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhc
Confidence 54434578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCC-CCCCcc
Q 004034 304 KPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEVE 382 (778)
Q Consensus 304 ~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 382 (778)
++++||+++...+..+.+.++..+++++.... .....+++++.... .......++..|.+...... ...+..
T Consensus 155 ~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (628)
T TIGR02316 155 TPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQ---HPPPHVLLVDRGLA----PMRLIPGRDVDYAALRTQHEDAQVPVE 227 (628)
T ss_pred CceEEEECCccccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCC----CcCcccCccccHHHHhhccccCCCCce
Confidence 99999999988888888888888777665431 23455666654321 11112223455665544321 223344
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
...+++++||+|||||||+||||+++|++++..........++++++|++++.++++|++++.+.++++|+.|+++++++
T Consensus 228 ~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~ 307 (628)
T TIGR02316 228 WLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYE 307 (628)
T ss_pred ecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeC
Confidence 56789999999999999999999999999776666667777899999999999999999998888999999999999998
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceec
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 542 (778)
+.+..+++..++++|++++||+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ .++++
T Consensus 308 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~---~~~~~ 384 (628)
T TIGR02316 308 GLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLG---KPVID 384 (628)
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhC---CCEEe
Confidence 877777999999999999999999999999999887543344567899999999999999999999999887 67999
Q ss_pred ccccccccceecccCCCC--CCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCC-cccccccCChhhhhhh
Q 004034 543 TWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWP-GAFRTLYGDHERYETT 618 (778)
Q Consensus 543 ~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p-~v~~gY~~~~~~~~~~ 618 (778)
.||+||++..++....+. .+...+++|+|++|++++|+|+ +|++++.|+.|||+|+||++ +++.|||++++++.+.
T Consensus 385 ~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~ 464 (628)
T TIGR02316 385 NYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKT 464 (628)
T ss_pred cccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHh
Confidence 999999986544332221 1345688999999999999998 79999999999999999763 7899999999999988
Q ss_pred ccCCC-CCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEc
Q 004034 619 YFKPF-PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 697 (778)
Q Consensus 619 ~~~~~-~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~ 697 (778)
|+... ++||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.||+|++++++..++.+++||+++
T Consensus 465 ~~~~~~~~~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~ 544 (628)
T TIGR02316 465 YWSHFKRPLYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILK 544 (628)
T ss_pred hhhcCCCCEEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEc
Confidence 87533 45999999999999999999999999999999999999999999999999999999999998899999999988
Q ss_pred CCCCC-----CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHHH
Q 004034 698 EGVPY-----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQL 772 (778)
Q Consensus 698 ~~~~~-----~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (778)
++... .+.+.++|+++++++|++|++|+.|+++++||+|+||||+|+.|++++.+. ..++.++++||++++++
T Consensus 545 ~~~~~~~~~~~~~~~~~i~~~~~~~L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~~--~~~~~~~~~~~~~~~~~ 622 (628)
T TIGR02316 545 ESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGKLLRRSIQALAEGR--DPGDLTTIDDPGALEQV 622 (628)
T ss_pred CCcccccccchHHHHHHHHHHHHHhcCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcCC--CCCCcccccCHHHHHHH
Confidence 65432 235678999999999999999999999999999999999999999998765 36789999999999999
Q ss_pred Hhhh
Q 004034 773 IALA 776 (778)
Q Consensus 773 ~~~~ 776 (778)
++..
T Consensus 623 ~~~~ 626 (628)
T TIGR02316 623 RRAM 626 (628)
T ss_pred HHHh
Confidence 8864
|
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. |
| >PTZ00237 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-92 Score=833.70 Aligned_cols=616 Identities=27% Similarity=0.448 Sum_probs=510.9
Q ss_pred ChHHHHHHHHHHhhCHHHHHHHHHhh-cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhcc--CCCe
Q 004034 141 SPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAG--LGDK 217 (778)
Q Consensus 141 ~~~~~~~ll~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~--~pd~ 217 (778)
.+++|+++++++++||+.||.++++. +.|.+++.+ +++. .+.+++||+++++|+++++|++++. . +||+
T Consensus 6 ~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~------~~~~~~wf~~~~~n~~~~~l~~~~~-~~~~~~~ 77 (647)
T PTZ00237 6 DPFDYENDSNYANSNPESFWDEVAKKYVHWDKMYDK-VYSG------DEIYPDWFKGGELNTCYNVLDIHVK-NPLKRDQ 77 (647)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHhcCeeeCCccc-ccCC------CCCchhhCCCCeeeHHHHHHHHhhc-ccCCCCc
Confidence 36889999999999999999999988 899999887 5422 1223699999999999999999886 4 7999
Q ss_pred EEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHH
Q 004034 218 VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297 (778)
Q Consensus 218 ~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~ 297 (778)
+|+++..++.+..+++||+||+++++++|+.|+++||++||+|+|++||++|+++++|||+++|++++|++++++++++.
T Consensus 78 ~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GDrV~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~ 157 (647)
T PTZ00237 78 DALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFDGYSVKSLI 157 (647)
T ss_pred eEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHH
Confidence 99999754433357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc----cC-CCCcccchhhcc
Q 004034 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT----KW-QDGRDIWWQDVV 372 (778)
Q Consensus 298 ~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~----~~-~~~~~~~~~~~l 372 (778)
++|++++|++||+++...+..+.+.+...+.+++... .....+++.+........... .. .......|++.+
T Consensus 158 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (647)
T PTZ00237 158 DRIETITPKLIITTNYGILNDEIITFTPNLKEAIELS---TFKPSNVITLFRNDITSESDLKKIETIPTIPNTLSWYDEI 234 (647)
T ss_pred HHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcc---cCCCCEEEEEEcCCcccccccccccccCCCcccccHHHHH
Confidence 9999999999999987777777777777666655421 012345554422110000000 00 001234455544
Q ss_pred CCC-----CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHH
Q 004034 373 PKY-----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447 (778)
Q Consensus 373 ~~~-----~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 447 (778)
... ....+....+++|+++|+|||||||+||||+++|++++......+...++..++|++++.++++|++++ ..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~w~~~~-~~ 313 (647)
T PTZ00237 235 KKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFH-GF 313 (647)
T ss_pred hhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhcCCCCCcEEEEcCCCceEeeH-HH
Confidence 321 111234556789999999999999999999999999665555555556778889999999999999875 46
Q ss_pred HHHHHhcCcEEEEEcCCCCCC--ChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc---cccCCCCceeEEEEecCCCC
Q 004034 448 TYGPMLNGASVVVFEGAPTYP--DSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY---VTRYSRKSLRVLGSVGEPIN 522 (778)
Q Consensus 448 i~~~L~~G~tlvl~~~~~~~~--~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~---~~~~~l~sLr~v~~gGe~l~ 522 (778)
++++|+.|++++++++....+ .+..+|+.|++++||+++++|++++.|++..... ...+++++||.++++||+++
T Consensus 314 ~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~ 393 (647)
T PTZ00237 314 LYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIE 393 (647)
T ss_pred HHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCC
Confidence 889999999999998743222 2688999999999999999999999998764321 23457899999999999999
Q ss_pred HHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCC
Q 004034 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (778)
Q Consensus 523 ~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p 602 (778)
+++++++++.+| +++++.||+||++++.+.... ......+++|+|++|++++|+|++|++++.|+.|||+|++|+|
T Consensus 394 ~~~~~~~~~~~g---~~i~~~yG~TE~~~~~~~~~~-~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~ 469 (647)
T PTZ00237 394 ESIPEYIENKLK---IKSSRGYGQTEIGITYLYCYG-HINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMP 469 (647)
T ss_pred HHHHHHHHHhcC---CCEEeeechHHhChhhhccCC-CCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCC
Confidence 999999999887 789999999999865543322 1122347899999999999999999999999999999999874
Q ss_pred -cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEE
Q 004034 603 -GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681 (778)
Q Consensus 603 -~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 681 (778)
+++.|||++++++.. +|...+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||.|.||+|+++
T Consensus 470 p~~~~gy~~~~~~~~~-~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~ 548 (647)
T PTZ00237 470 PSFATTFYKNDEKFKQ-LFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGI 548 (647)
T ss_pred chhhCceeCCHHHHHH-HHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEee
Confidence 999999999999985 555568999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCC---CCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcC
Q 004034 682 EHEVKGQGIYAFVTLVEGV---PYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 757 (778)
Q Consensus 682 ~~~~~~~~lva~Vv~~~~~---~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~ 757 (778)
+++..++.++|||+++++. ..+ +++.++|+++++++|++|++|+.|+++++||+|+||||+|+.|++++++. +.
T Consensus 549 ~~~~~g~~~~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~--~~ 626 (647)
T PTZ00237 549 YDPDCYNVPIGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDS--NY 626 (647)
T ss_pred EcCCCCCEEEEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCC--CC
Confidence 9998899999999998542 222 46778999999999999999999999999999999999999999999765 46
Q ss_pred CCCCCCCChhhHHHHHhh
Q 004034 758 GDTSTLADPGVVDQLIAL 775 (778)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~ 775 (778)
++++|++|++++++|++.
T Consensus 627 ~~~~~~~~~~~~~~~~~~ 644 (647)
T PTZ00237 627 QLPDNVNDSEIFYKIKEL 644 (647)
T ss_pred CCCccccCHHHHHHHHHH
Confidence 789999999999999875
|
|
| >PRK10524 prpE propionyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-91 Score=824.52 Aligned_cols=614 Identities=39% Similarity=0.710 Sum_probs=526.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEE
Q 004034 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYW 222 (778)
Q Consensus 143 ~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~ 222 (778)
++|.++++++++||+.||.++++.+.|.+++.+ +++.+ .+.+++||+++++|+++++|+++++ .+|+++|+++
T Consensus 2 ~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~l~~~~~-~~p~~~A~~~ 74 (629)
T PRK10524 2 MSYSEFYQRSIDDPEAFWAEQARRIDWQTPFTQ-VLDYS-----NPPFARWFVGGRTNLCHNAVDRHLA-KRPEQLALIA 74 (629)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHhCCcccCchh-hccCC-----CCCcCccCCCcEeeHHHHHHHHhhc-cCCCCeEEEE
Confidence 569999999999999999999988999999887 64221 2234699999999999999999987 8999999998
Q ss_pred EcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHh
Q 004034 223 EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302 (778)
Q Consensus 223 ~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~ 302 (778)
.+.+.+..+++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++|++
T Consensus 75 ~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~ 154 (629)
T PRK10524 75 VSTETDEERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYMPMIAEAAFAMLACARIGAIHSVVFGGFASHSLAARIDD 154 (629)
T ss_pred EcCCCCceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHh
Confidence 65433446899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCC-CCCCc
Q 004034 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEV 381 (778)
Q Consensus 303 ~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 381 (778)
++++++|+++...++.+.+.+++.+++++..+. .....+++++.... ........+..|.+...... ...+.
T Consensus 155 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (629)
T PRK10524 155 AKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQ---HKPRHVLLVDRGLA----PMARVAGRDVDYATLRAQHLGARVPV 227 (629)
T ss_pred cCCcEEEEccCcccCCcccccHHHHHHHHHhcC---CCCCEEEEEeCCCC----CcCcccCCcccHHHHHhcCCCCCCCc
Confidence 999999999988888888888887777665431 23455666553211 11122223445555443321 22333
Q ss_pred cccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 382 ~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
....+++++||+|||||||+||||+++|++++......+...+++.++|++++.++++|++++.+.++++|+.|++++++
T Consensus 228 ~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~ 307 (629)
T PRK10524 228 EWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMY 307 (629)
T ss_pred eeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhcCCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEE
Confidence 45678999999999999999999999999987777766777789999999999999999999888899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
++.+..+++..++++|+++++|+++++|++++.|.+.........++++||.+++|||++++++++++.+.++ ++++
T Consensus 308 ~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~---~~v~ 384 (629)
T PRK10524 308 EGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALG---VPVI 384 (629)
T ss_pred CCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcC---CCeE
Confidence 8877778999999999999999999999999999886543334567899999999999999999999999886 6899
Q ss_pred cccccccccceecccCCC--CCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCC-cccccccCChhhhhh
Q 004034 542 DTWWQTETGGFMITPLPG--AWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWP-GAFRTLYGDHERYET 617 (778)
Q Consensus 542 ~~YG~TE~g~~~~~~~~~--~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p-~v~~gY~~~~~~~~~ 617 (778)
+.||+||++..++....+ ..+.+++++|+|++|++++|+|+ +|++++.|+.|||+|+||++ ++++|||++++++..
T Consensus 385 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~ 464 (629)
T PRK10524 385 DNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVK 464 (629)
T ss_pred eccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHH
Confidence 999999998543332221 12345788999999999999998 99999999999999999763 789999999999998
Q ss_pred hccCCC-CCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEE
Q 004034 618 TYFKPF-PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 696 (778)
Q Consensus 618 ~~~~~~-~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 696 (778)
.|+... +|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.||+|++++++..++.+++||++
T Consensus 465 ~~~~~~~~~~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~ 544 (629)
T PRK10524 465 TYWSLFGRQVYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVP 544 (629)
T ss_pred hhhccCCCcEEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEE
Confidence 887543 4799999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCCCCC-----CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHH
Q 004034 697 VEGVPY-----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQ 771 (778)
Q Consensus 697 ~~~~~~-----~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (778)
+++... .+++.++|+++++++|+.|++|..|+++++||+|+|||++|+.|++++.++ ..++.++++||+++++
T Consensus 545 ~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~--~~~~~~~~~~~~~~~~ 622 (629)
T PRK10524 545 KDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGR--DPGDLTTIEDPAALQQ 622 (629)
T ss_pred CCCCccccccchHHHHHHHHHHHHhhcCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC--CCCCcccccCHHHHHH
Confidence 865432 235678999999999999999999999999999999999999999998765 4678999999999999
Q ss_pred HHhh
Q 004034 772 LIAL 775 (778)
Q Consensus 772 ~~~~ 775 (778)
+++.
T Consensus 623 ~~~~ 626 (629)
T PRK10524 623 IRQA 626 (629)
T ss_pred HHHH
Confidence 9875
|
|
| >TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-90 Score=816.46 Aligned_cols=610 Identities=23% Similarity=0.409 Sum_probs=514.7
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHhh--cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEE
Q 004034 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (778)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~A 219 (778)
+..|.++++++++||+.||.++++. +.|.++|.+ +++.. .+.+++||+++++|.+++++++ .++++|
T Consensus 34 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~wf~~~~~n~~~~~~~~-----~~~~~a 102 (652)
T TIGR01217 34 EGGYDALHRWSVDELDTFWKAVWEWFDVRFSTPCAR-VVDDR-----TMPGAQWFPGARLNYAENLLRA-----AGTEPA 102 (652)
T ss_pred hhhHHHHHHHHHhCHHHHHHHHHHhCCcceeCCCce-eeeCC-----CCCCCEECCCCeeeHHHHHhcc-----CCCCeE
Confidence 4789999999999999999999887 899998887 54211 1224699999999999999873 458999
Q ss_pred EEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHH
Q 004034 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (778)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~ 299 (778)
+++.+++ +..+++||+||.++++++|+.|+++|+++||+|+|+++|++|+++++|||+++|++++|++|.++++++.++
T Consensus 103 ~~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrV~i~~~n~~e~~~~~lA~~~~Gav~vp~~~~~~~~~l~~~ 181 (652)
T TIGR01217 103 LLYVDET-HEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIWSSCSPDFGARGVLDR 181 (652)
T ss_pred EEEECCC-CCeeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHH
Confidence 9997543 445789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCC-CCC
Q 004034 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (778)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 378 (778)
|++++|++||+++...++++.+.....+.++...+ +.++.+++++....... ... ...+...|++.+... ...
T Consensus 182 l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 255 (652)
T TIGR01217 182 FQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKEL----PTLRAVVHIPYLGPRET-EAP-KIDGALDLEDFTAAAQAAE 255 (652)
T ss_pred HHhcCCcEEEEccccccCCcccchHHHHHHHHhcC----CCccEEEEEeCCCCccc-ccc-cccCcccHHHHHhcccCCC
Confidence 99999999999998888888888888777766554 45566666543221000 000 011244566654431 112
Q ss_pred CCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEE
Q 004034 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (778)
Q Consensus 379 ~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tl 458 (778)
.+.....++|+++|+|||||||+||||+++|++++..........+++.++|+++++++++|+++ .+ ++.+|+.|+++
T Consensus 256 ~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~-~~~~l~~G~t~ 333 (652)
T TIGR01217 256 LVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHCDLGPGDRLFYYTTTGWMMW-NW-LVSGLATGATL 333 (652)
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhccCCCCCcEEEEeCCcchhhh-HH-HHHHHhcCcEE
Confidence 23345677999999999999999999999999977666666666789999999999999999864 33 55899999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCc
Q 004034 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (778)
Q Consensus 459 vl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (778)
+++++.+.++++..+++++++++||++.++|++++.|...........++++||.+++|||++++++++++.+.++. ++
T Consensus 334 vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~ 412 (652)
T TIGR01217 334 VLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DV 412 (652)
T ss_pred EEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCC-Cc
Confidence 99988776678999999999999999999999998887654322345688999999999999999999999998864 46
Q ss_pred ceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChh--hhh
Q 004034 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (778)
Q Consensus 539 ~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~--~~~ 616 (778)
.+.+.||+||+++......+ ..+..++++|.|.+|++++|+|++|+++ .|+.|||+|+||+|+++.|||++++ ++.
T Consensus 413 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~ 490 (652)
T TIGR01217 413 WLASISGGTDICSCFAGANP-TLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYR 490 (652)
T ss_pred eEEeccCHHHHhccccCCCC-CCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchhH
Confidence 78899999997543332211 1234568899999999999999999998 4899999999998899999999997 555
Q ss_pred hhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEE
Q 004034 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 696 (778)
Q Consensus 617 ~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 696 (778)
..|+...+|||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|.+||+|.||+|++++++..++.++|||++
T Consensus 491 ~~~~~~~~g~~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~ 570 (652)
T TIGR01217 491 DAYFDTYPGVWRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHL 570 (652)
T ss_pred HhhhcCCCCEEEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEE
Confidence 67777678999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHHHHhhh
Q 004034 697 VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIALA 776 (778)
Q Consensus 697 ~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (778)
+++...++++.++|+++|+++|++|++|+.|+++++||+|+||||+|+.|+++++++ +.++.++++||++++++++++
T Consensus 571 ~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 648 (652)
T TIGR01217 571 APGATLDDALLDRIKRTIRAGLSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQGT--PVDNPGAIDNPELLDLYEELA 648 (652)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccChHHHHHHHHcCC--CCCCcccccCHHHHHHHHHHH
Confidence 887766677788999999999999999999999999999999999999999998765 467899999999999998864
|
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. |
| >PRK03584 acetoacetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-89 Score=811.95 Aligned_cols=612 Identities=27% Similarity=0.443 Sum_probs=517.8
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHhh--cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEE
Q 004034 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (778)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~A 219 (778)
+..|.++++++++||+.||.++++. +.|.+++.. +.+. .. ..+++||.++.+|.+++++++ .+|+++|
T Consensus 33 ~~~~~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~~wf~~~~~n~~~~~~~~----~~~~~~A 102 (655)
T PRK03584 33 FDDYAALWRWSVEDLEAFWQSVWDFFGVIGSTPYTV-VLAG-RR----MPGARWFPGARLNYAENLLRH----RRDDRPA 102 (655)
T ss_pred hHhHHHHHHHHHhCHHHHHHHHHHhcCceecCCCcE-eecC-CC----CCCCeeCCCCEeeHHHHhhcc----CCCCCeE
Confidence 4789999999999999999999876 789888776 4321 11 123599999999999999874 4799999
Q ss_pred EEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHH
Q 004034 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (778)
Q Consensus 220 l~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~ 299 (778)
+++.+++ +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 103 l~~~~~~-~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~ 181 (655)
T PRK03584 103 IIFRGED-GPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDR 181 (655)
T ss_pred EEEECCC-CceEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEeeCCCCCHHHHHHH
Confidence 9997543 446899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCC-CCC
Q 004034 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTK 378 (778)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 378 (778)
|++++++++|+++....+.+.+.....+.++...+ +.+..++.++..... ...........|++.+... ...
T Consensus 182 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 254 (655)
T PRK03584 182 FGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAAL----PSLEHVVVVPYLGPA---AAAAALPGALLWEDFLAPAEAAE 254 (655)
T ss_pred HHHcCCcEEEEccccccCCcccchHHHHHHHHhcC----CCccEEEEEecCCCc---ccccccCCcccHHHHhhccccCC
Confidence 99999999999998877777777777776665544 455566665532200 0011122345566555421 222
Q ss_pred CCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEE
Q 004034 379 CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458 (778)
Q Consensus 379 ~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tl 458 (778)
.......+++++||+|||||||+||||+++|++++.+....+...+++.++|+++++++++|+++. .++++|+.|+++
T Consensus 255 ~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~ 332 (655)
T PRK03584 255 LEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHCDLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATL 332 (655)
T ss_pred CCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhcCCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEE
Confidence 334456789999999999999999999999999776666666778899999999999999998653 367899999999
Q ss_pred EEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCc
Q 004034 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (778)
Q Consensus 459 vl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (778)
+++++.+..+++..++++++++++|++.++|++++.|++.........++++||.+++|||++++++++++.+.++. ++
T Consensus 333 vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~ 411 (655)
T PRK03584 333 VLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DV 411 (655)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCC-Cc
Confidence 99988777779999999999999999999999999998764332344678999999999999999999999999854 47
Q ss_pred ceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChh--hhh
Q 004034 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE--RYE 616 (778)
Q Consensus 539 ~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~--~~~ 616 (778)
++.+.||+||+++......+ ..+..++++|.|++|++++|+|++|+++ .|+.|||+|+||+|+++.|||++++ ++.
T Consensus 412 ~~~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~ 489 (655)
T PRK03584 412 WLASISGGTDICSCFVGGNP-LLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYR 489 (655)
T ss_pred eEEeccChHhhhcccccCCC-CCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHH
Confidence 89999999998654332221 1245678899999999999999999999 7899999999988899999999986 566
Q ss_pred hhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEE
Q 004034 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 696 (778)
Q Consensus 617 ~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 696 (778)
..++...+|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.||+|++++++..++.+++||++
T Consensus 490 ~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~ 569 (655)
T PRK03584 490 DAYFDTFPGVWRHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVL 569 (655)
T ss_pred HhhhccCCCEeecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEE
Confidence 67777678899999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc-CcCCCCCCCCChhhHHHHHhh
Q 004034 697 VEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL-DELGDTSTLADPGVVDQLIAL 775 (778)
Q Consensus 697 ~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 775 (778)
+++...++++.++|+++|+++|++|++|..|+++++||+|+||||+|+.|++++.+.. ..+.+.++++||++++++++.
T Consensus 570 ~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (655)
T PRK03584 570 AEGVTLDDALRARIRTTIRTNLSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHGRPVKKAVNRDALANPEALDWFADL 649 (655)
T ss_pred CCCCCCcHHHHHHHHHHHHhhCCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcCCCCCCCCCcccccCHHHHHHHHHH
Confidence 8876656677789999999999999999999999999999999999999999987653 223489999999999999886
Q ss_pred h
Q 004034 776 A 776 (778)
Q Consensus 776 ~ 776 (778)
+
T Consensus 650 ~ 650 (655)
T PRK03584 650 A 650 (655)
T ss_pred H
Confidence 4
|
|
| >PLN03052 acetate--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-85 Score=774.26 Aligned_cols=583 Identities=26% Similarity=0.401 Sum_probs=477.9
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHhh--cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEE
Q 004034 142 PQKYLEMYKRSVEDPAGFWADIASE--FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVA 219 (778)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~A 219 (778)
+.+|.++++++++||+.||.++++. +.|.+++.+ +++... ...+..+||+++++|.++++|+++++ ++||++|
T Consensus 119 ~~~y~~~~~~sv~~~~~fw~~~~~~~~~~~~~~~~~-v~~~~~---~~~~~~~wf~g~~ln~~~~~l~~~~~-~~pd~~A 193 (728)
T PLN03052 119 ISSFSEFQRFSVENPEVYWSIVLDELSLVFSVPPRC-ILDTSD---ESNPGGQWLPGAVLNVAECCLTPKPS-KTDDSIA 193 (728)
T ss_pred hhhHHHHHHHHhhCHHHHHHHHHHhcCCCccCCCce-eecCCC---CCCCCCEECCCCEeEHHHHHHHHHhc-cCCCCeE
Confidence 4789999999999999999999876 579888877 553210 11123599999999999999999876 7899999
Q ss_pred EEEEcCC--CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHH
Q 004034 220 IYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297 (778)
Q Consensus 220 l~~~~~~--~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~ 297 (778)
+++.++. .+..+++||+||+++++++|+.|+++|+++||+|+|++||++|++++||||+++|++++|++|+++++++.
T Consensus 194 i~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~~Gv~~GdrVai~~pn~~e~via~LA~~~~Gav~vpi~p~~~~~~l~ 273 (728)
T PLN03052 194 IIWRDEGSDDLPVNRMTLSELRSQVSRVANALDALGFEKGDAIAIDMPMNVHAVIIYLAIILAGCVVVSIADSFAPSEIA 273 (728)
T ss_pred EEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHH
Confidence 9998542 12347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCC-
Q 004034 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP- 376 (778)
Q Consensus 298 ~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 376 (778)
+++++++|++||+++...++++.+++...+.+... ..++++....... ... ...++..|++.+....
T Consensus 274 ~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~---------~~~iv~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~ 341 (728)
T PLN03052 274 TRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKA---------PKAIVLPADGKSV--RVK-LREGDMSWDDFLARANG 341 (728)
T ss_pred HHHHhcCceEEEEcCccccCCcccchHHHHHHhcC---------CcEEEEeCCCCcc--ccc-cccCCccHHHHHhcccc
Confidence 99999999999999988777777776555443211 1244443221000 000 0113455666543321
Q ss_pred ----CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHH
Q 004034 377 ----TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452 (778)
Q Consensus 377 ----~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L 452 (778)
...+.....+++++||+|||||||+||||+++|++++.. .......+++.++|+++++++++|+++. +.++++|
T Consensus 342 ~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~-~~~~~~~~~l~~~d~~~~~~~l~w~~g~-~~v~~~L 419 (728)
T PLN03052 342 LRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRA-AADAWAHLDIRKGDIVCWPTNLGWMMGP-WLVYASL 419 (728)
T ss_pred ccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHH-HHHHHHhcCCCCCcEEEECCCcHHHhHH-HHHHHHH
Confidence 112222346799999999999999999999999986544 3334445789999999999999999985 6788999
Q ss_pred hcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHH
Q 004034 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532 (778)
Q Consensus 453 ~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 532 (778)
++|++++++++. +++..+++++++++||+++++|++++.|.+... ...+++++||.++++||+++++.+.|+.+.
T Consensus 420 ~~Gat~vl~~g~---p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~--~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~ 494 (728)
T PLN03052 420 LNGATLALYNGS---PLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNC--MAGLDWSSIRCFGSTGEASSVDDYLWLMSR 494 (728)
T ss_pred HhCCEEEEeCCC---CCCChHHHHHHHHCCCEEEECHHHHHHHHhcCC--cccCChhheeEEEecCCCCCHHHHHHHHHh
Confidence 999999999865 345679999999999999999999999988653 245688999999999999999999999887
Q ss_pred hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCe--eeEEEEecCCCcccccccC
Q 004034 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC--SGYLCIKSSWPGAFRTLYG 610 (778)
Q Consensus 533 ~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~--~GEL~v~g~~p~v~~gY~~ 610 (778)
++. .++++.||+||+++..+...+ ..+..++++|+|++|++++|+|++|++++.|+ .|||++++++++...+|++
T Consensus 495 ~~~--~~i~~~yG~TE~~~~~~~~~~-~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~ 571 (728)
T PLN03052 495 AGY--KPIIEYCGGTELGGGFVTGSL-LQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLN 571 (728)
T ss_pred cCC--CCeEeeccChhhCcccccCCC-CCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccC
Confidence 762 579999999999865443222 12446788999999999999999999999985 6999999877778888988
Q ss_pred ChhhhhhhccCCC---CC--eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh-cCCccceEEEEEEecC
Q 004034 611 DHERYETTYFKPF---PG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGVEHE 684 (778)
Q Consensus 611 ~~~~~~~~~~~~~---~G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~-~~p~V~ea~Vv~~~~~ 684 (778)
+. ....||... +| ||+|||++++|+||+++|+||+||+||++|+||+|.|||++|. .||+|.||+||+++++
T Consensus 572 ~~--~~~~yf~~~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~ 649 (728)
T PLN03052 572 AD--HYKVYFKGMPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPP 649 (728)
T ss_pred ch--hhhhhhhcCCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecC
Confidence 74 235565432 24 9999999999999999999999999999999999999999995 8999999999999998
Q ss_pred CCC-eEEEEEEEEc--CCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 685 VKG-QGIYAFVTLV--EGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 685 ~~~-~~lva~Vv~~--~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
..| +.+++||+++ ++...+ ++++++|+++|+++|+++++|+.|+++++||+|+||||+|+.|++++.+.
T Consensus 650 ~~g~e~~~afVvl~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~ 722 (728)
T PLN03052 650 GGGPEQLVIAAVLKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQE 722 (728)
T ss_pred CCCcEEEEEEEEEecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhh
Confidence 665 8999999997 554433 67888999999999999999999999999999999999999999988643
|
|
| >KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-78 Score=675.17 Aligned_cols=500 Identities=29% Similarity=0.469 Sum_probs=418.8
Q ss_pred CCCe-EEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcC--CCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCC
Q 004034 214 LGDK-VAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIG--VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAG 290 (778)
Q Consensus 214 ~pd~-~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~G--v~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~ 290 (778)
.+++ +++++...+ ++.+||+|+.+++.|+|..|.++| +++||+|+|++||+++++.++|||+.+|+++.|++|.
T Consensus 29 ~~~~~~~~i~~~~~---g~~~T~~e~~~~~~r~A~~L~~~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~ 105 (537)
T KOG1176|consen 29 YLDRNTSLVYQDSD---GRELTYSELHDRCRRLASALSELGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPR 105 (537)
T ss_pred cccCcceEEEecCC---CcEEcHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcc
Confidence 4444 888887533 589999999999999999999876 8999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC-CCcccc-h
Q 004034 291 FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ-DGRDIW-W 368 (778)
Q Consensus 291 ~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~-~ 368 (778)
+.+.++.+.++++++++||++.... +.+.++...+ . ..++++..... ..... ...... +
T Consensus 106 ~~~~ei~~~~~~s~~kiif~d~~~~---------~~i~~~~~~~----~--~~i~~l~~~~~----~~~~~~~~~~~~~~ 166 (537)
T KOG1176|consen 106 LTASEIAKQLKDSKPKLIFVDEDFY---------DKISEATSKL----A--LKIIVLTGDEG----VISISDLVEDLDAF 166 (537)
T ss_pred cCHHHHHHHHHhcCCeEEEEcCchH---------HHHHHHHhhc----C--CceEEEecccC----ccccccccccccch
Confidence 9999999999999999999988753 2333333222 1 33443332200 00000 001111 3
Q ss_pred hhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHH
Q 004034 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (778)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i 448 (778)
.+.+....... ....+.+|++.|+|||||||.||||+++|++++.+... ......+...|+.++++|++|..|+...+
T Consensus 167 ~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PKgV~lsHr~~~~~~~~-~~~~~~~~~~~v~l~~lPl~H~~Gl~~~~ 244 (537)
T KOG1176|consen 167 EDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPKGVVLSHRNLIANTLS-IKIGWELTSDDVYLCTLPLFHIYGLITLL 244 (537)
T ss_pred hhccccCCCcc-cccCCCCCeEEEecCCCCCCCCceEEEecHHHHHHHHH-hhhcccCCCCceEEEechHHHHhHHHHHH
Confidence 33333322222 45667799999999999999999999999996555333 33345566689999999999999966555
Q ss_pred HHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHH
Q 004034 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (778)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (778)
.+.+..|+++++.. .++++.+++.|++|+||++.++|+++..|++.+. ...++++++|.+++||.++++++.++
T Consensus 245 ~~~~~~~~~ii~~~----~f~~~~~~~~i~kykvt~~~~vP~~~~~l~~~p~--~~~~~l~sl~~v~~gga~~~~~~~~~ 318 (537)
T KOG1176|consen 245 LSLLAGGTTIICLR----KFDAELFLDLIEKYKVTHLFLVPPVLNMLAKSPI--VKKYDLSSLRSVLSGGAPLSPATLEK 318 (537)
T ss_pred HHHHhCCceEEECC----CCCHHHHHHHHHHhCEEEEEcChHHHHHHhcCCc--cCcccCCccEEEEecCCCCCHHHHHH
Confidence 44555555555542 3599999999999999999999999999999873 45679999999999999999999999
Q ss_pred HHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccc
Q 004034 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (778)
Q Consensus 529 ~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY 608 (778)
+.+.++ ...+.+.||+||+++..+.+..... .+++++|+++++++..|.++.|+.+++++.||||++| +.++.||
T Consensus 319 ~~~~l~--~~~v~q~YGmTE~~~~~~~~~~~~e-~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg--~~imkGY 393 (537)
T KOG1176|consen 319 VKERLP--NVTVIQGYGMTEAGGLITSNDWGPE-RKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRG--PQVMKGY 393 (537)
T ss_pred HHHhCC--CceEEEeeccccccCceeecCCCcc-CcccccCccccceEEEeeCCCCCCCCCCCceEEEEEC--cccchhh
Confidence 999998 4789999999999976665544332 5899999999999999999999999999999999999 9999999
Q ss_pred cCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCe
Q 004034 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 609 ~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 688 (778)
|+||+.+.+.+.+ +|||+|||+|++|+||+|+|++|++|+||.+|++|+|.|||++|..||.|.|||||+++|+..|+
T Consensus 394 ~~NpeaT~~~~~~--~GW~~TGDiGy~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge 471 (537)
T KOG1176|consen 394 LKNPEATKEAFDD--DGWFHTGDLGYFDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGE 471 (537)
T ss_pred cCChHHHHhhccc--CCccccCceEEEcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCC
Confidence 9999999988765 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 689 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
.++|||+.+++...+ +++|+++|+++|+.|++|..++|+++||||+||||+|+.|++++.+.
T Consensus 472 ~p~A~VV~k~g~~lt---e~di~~~v~k~l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~~ 533 (537)
T KOG1176|consen 472 TPAAFVVLKKGSTLT---EKDIIEYVRKKLPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKKL 533 (537)
T ss_pred cceEEEEecCCCcCC---HHHHHHHHHhhCChhhccCeEEEeccCCCCCcchHHHHHHHHHHHhc
Confidence 999999999876665 78999999999999999999999999999999999999999998753
|
|
| >PRK04319 acetyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-75 Score=682.88 Aligned_cols=536 Identities=42% Similarity=0.724 Sum_probs=451.7
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
+||.++.+|+++++++++++..+|+++|+++.++. ..+++||+||.++++++|.+|+++|+++||+|+|+++|+++++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 112 (570)
T PRK04319 35 SWLETGKVNIAYEAIDRHADGGRKDKVALRYLDAS--RKEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELY 112 (570)
T ss_pred ccCCCCceeHHHHHHHHhhccCCCCceEEEEECCC--CceeecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHH
Confidence 79999999999999999986347999999986432 3578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (778)
+++|||+++|++++|+++.++.+++.+++++++++++|+++....... ...+ +.++.++.++...
T Consensus 113 ~~~la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-----------~~~~----~~~~~~~~~~~~~ 177 (570)
T PRK04319 113 FALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKP-----------ADDL----PSLKHVLLVGEDV 177 (570)
T ss_pred HHHHHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccc-----------hhcC----CCceEEEEECCCc
Confidence 999999999999999999999999999999999999999876432110 0011 3344455444321
Q ss_pred ccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcE
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~ 431 (778)
. .......|.+.+...+...+.....++++++|+|||||||.||||+++|++++.+ .......+++.++|+
T Consensus 178 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~-~~~~~~~~~~~~~d~ 248 (570)
T PRK04319 178 E--------EGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQH-YQTGKYVLDLHEDDV 248 (570)
T ss_pred C--------CCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHH-HHHHHHhcCCCCCce
Confidence 0 0112234444443333333344557899999999999999999999999995543 444556688899999
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCce
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sL 511 (778)
+++..+++|.+++.+.++.+|..|+++++.... +++..+++.|+++++|+++++|++++.|.+.........++++|
T Consensus 249 ~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 325 (570)
T PRK04319 249 YWCTADPGWVTGTSYGIFAPWLNGATNVIDGGR---FSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSL 325 (570)
T ss_pred EEecCChHHhhCchHHHHHHHhcCceEEEECCC---CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccc
Confidence 999999999999888899999999999997542 58999999999999999999999999998765433344578899
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCe
Q 004034 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGEC 591 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~ 591 (778)
|.+++|||++++++.+++.+.++ .++++.||+||++.+.+..... ....++++|+|+++++++|+|+++++++.|+
T Consensus 326 r~~~~gG~~l~~~~~~~~~~~~g---~~i~~~YG~tE~~~~~~~~~~~-~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~ 401 (570)
T PRK04319 326 RHILSVGEPLNPEVVRWGMKVFG---LPIHDNWWMTETGGIMIANYPA-MDIKPGSMGKPLPGIEAAIVDDQGNELPPNR 401 (570)
T ss_pred eEEEEcccCCCHHHHHHHHHHhC---CCeEeceeecccCCEEEecCCC-CCCCCCcCcCCCCCCEEEEECCCCCCCCCCC
Confidence 99999999999999999999887 6799999999998765543322 2346789999999999999999999999999
Q ss_pred eeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCC
Q 004034 592 SGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHP 671 (778)
Q Consensus 592 ~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p 671 (778)
.|||+|++++|++++|||++++.+...+. +|||+|||++++++||+++++||.||+||++|++|+|.|||++|.+||
T Consensus 402 ~Gel~i~~~~~~~~~GY~~~~~~~~~~~~---~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~ 478 (570)
T PRK04319 402 MGNLAIKKGWPSMMRGIWNNPEKYESYFA---GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHP 478 (570)
T ss_pred ceEEEEcCCCChHHhHhcCCHHHhhhhhc---CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCC
Confidence 99999998778999999999998877653 689999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 672 QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 672 ~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
.|.+++|++++++..++.+++||++.++...++++.++|+++++++|+.|++|+.|+++++||+|++||++|++|+++..
T Consensus 479 ~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~ 558 (570)
T PRK04319 479 AVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL 558 (570)
T ss_pred CeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence 99999999999988899999999998776555667789999999999999999999999999999999999999999875
Q ss_pred cccCcCCCCCCCCC
Q 004034 752 RQLDELGDTSTLAD 765 (778)
Q Consensus 752 ~~~~~~~~~~~~~~ 765 (778)
+. ..++.+++.|
T Consensus 559 ~~--~~~~~~~~~~ 570 (570)
T PRK04319 559 GL--PEGDLSTMED 570 (570)
T ss_pred CC--CcCccccccC
Confidence 43 2334555554
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-76 Score=756.25 Aligned_cols=608 Identities=18% Similarity=0.192 Sum_probs=469.7
Q ss_pred CCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCccccccc
Q 004034 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSEN 181 (778)
Q Consensus 102 ~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (778)
...++|||++.+. +.++.+...++|++++|+++++.+++++|..+|++++++|++++.++.. +. ..+.. .+...
T Consensus 152 ~~~~~~dl~~~v~--~~~~~l~l~~~y~~~lf~~~~i~~l~~~f~~lL~~~~~~p~~~l~~l~~-~~-~~~~~--~~~~~ 225 (1389)
T TIGR03443 152 STGSTTDLTVFLT--PSSPELELSIYYNSLLFSSDRITIVADQLAQLLSAASSNPDEPIGKVSL-IT-PSQKS--LLPDP 225 (1389)
T ss_pred ccCCccceEEEEE--ecCCcEEEEEEEchhcCCHHHHHHHHHHHHHHHHHHHhCcCCceecccC-CC-HHHHh--hhhcc
Confidence 3557899999877 5556788999999999999999999999999999999999999988742 11 11100 01000
Q ss_pred ccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCC---CCcceeecHHHHHHHHHHHHHHHHHcCCCCCC
Q 004034 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258 (778)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd 258 (778)
.. ...|... ..+++++|+++++ .+||++|+++.... ....+++||+||+++++++|++|++.|+++||
T Consensus 226 ---~~---~~~~~~~--~~~l~~~~~~~a~-~~pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~gv~~g~ 296 (1389)
T TIGR03443 226 ---TK---DLDWSGF--RGAIHDIFADNAE-KHPDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLKTGIKRGD 296 (1389)
T ss_pred ---cc---ccCcCcc--cCcHHHHHHHHHH-hCCCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 00 0134221 2368999999999 89999999864211 12367899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcC
Q 004034 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSG 338 (778)
Q Consensus 259 ~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (778)
+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+.+.... +...+...........
T Consensus 297 ~V~i~~~~~~~~i~~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~------~~~~~~~~~~~~~~~~ 370 (1389)
T TIGR03443 297 VVMIYAYRGVDLVVAVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGT------LDQLVRDYIDKELELR 370 (1389)
T ss_pred EEEEEecCCHHHHHHHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccc------cchhhhhhhhcccccc
Confidence 9999999999999999999999999999999999999999999999999998764311 0111111110000000
Q ss_pred CCccEEEEEccCCccccccccCCCCcccchhhccCCC---CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHH
Q 004034 339 ISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY---PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415 (778)
Q Consensus 339 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~ 415 (778)
..+..+ .+....... .... .....+.+... ..........+++++||+|||||||+||||+++|++++ +
T Consensus 371 ~~~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~-~ 442 (1389)
T TIGR03443 371 TEIPAL-ALQDDGSLV--GGSL----EGGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLA-Y 442 (1389)
T ss_pred cccceE-Eeccccccc--cccc----ccccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHH-H
Confidence 011111 111110000 0000 00000000000 00111223568999999999999999999999999954 4
Q ss_pred HHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHH
Q 004034 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 416 ~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L 495 (778)
...++...+++.++|++++.++++|+.+ .+.+|.+|+.|+++++.+.. ...++..+++.|++++||+++++|++++.|
T Consensus 443 ~~~~~~~~~~~~~~d~~~~~~~~~~d~~-~~~i~~~L~~G~~l~~~~~~-~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l 520 (1389)
T TIGR03443 443 YFPWMAKRFGLSENDKFTMLSGIAHDPI-QRDMFTPLFLGAQLLVPTAD-DIGTPGRLAEWMAKYGATVTHLTPAMGQLL 520 (1389)
T ss_pred HHHHHHHhcCCCCCCEEEEecCceecch-HHHHHHHHhCCCEEEEcChh-hccCHHHHHHHHHHhCCeEEEeCHHHHHHH
Confidence 4555667789999999999999999986 67899999999999997643 334788999999999999999999999998
Q ss_pred HhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC-C--------CCCCCC
Q 004034 496 MRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-A--------WPQKPG 566 (778)
Q Consensus 496 ~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~-~--------~~~~~~ 566 (778)
..... ..+++||.+++|||++++...+++.+..+ +++++|.||+||++.+++..... . ......
T Consensus 521 ~~~~~-----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1389)
T TIGR03443 521 SAQAT-----TPIPSLHHAFFVGDILTKRDCLRLQTLAE--NVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVM 593 (1389)
T ss_pred Hhccc-----ccCCCccEEEEecccCCHHHHHHHHHhCC--CCEEEECccCCccceeEEEEEccccccccchhhcccCcC
Confidence 75432 25789999999999999999998887765 47899999999998755432111 0 011346
Q ss_pred CcCcCcCCceEEEECCC--CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC----------------------
Q 004034 567 SATFPFFGVQPVIVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP---------------------- 622 (778)
Q Consensus 567 ~~G~p~~g~~~~Ivd~~--g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~---------------------- 622 (778)
++|+|+++++++|+|++ +++++.|+.|||+|+| |++++||+|+++.+.+.|...
T Consensus 594 ~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G--~~v~~GY~~~p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1389)
T TIGR03443 594 PAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRA--GGLAEGYLGLPELNAEKFVNNWFVDPSHWIDLDKENNKPEREF 671 (1389)
T ss_pred cCCCccCCCEEEEECCccCCCcCCCCCceEEEecc--cccchhcCCChhHhhhhccCCcccCcccccccccccccccccc
Confidence 79999999999999964 5789999999999999 899999999999888877431
Q ss_pred ----CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 623 ----FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 623 ----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
.+|||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|.+||.|.+++|++.++...++.++|||++..
T Consensus 672 ~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~~a~v~~~~~~~~~~~lva~vv~~~ 751 (1389)
T TIGR03443 672 WLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVRENVTLVRRDKDEEPTLVSYIVPQD 751 (1389)
T ss_pred cCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchheeEEEEeeCCCCCeEEEEEEeccC
Confidence 2579999999999999999999999999999999999999999999999999999999988877889999999763
Q ss_pred CCC-C----------------------CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 699 GVP-Y----------------------SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 699 ~~~-~----------------------~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
... . ..+..++|+++++++||.||+|..|+++++||+|+||||||++|++.
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~ 825 (1389)
T TIGR03443 752 KSDELEEFKSEVDDEESSDPVVKGLIKYRKLIKDIREYLKKKLPSYAIPTVIVPLKKLPLNPNGKVDKPALPFP 825 (1389)
T ss_pred ccccccccccccccccccccchhhhhhhhhhHHHHHHHHHhhCCcccCCceEEEcccCCCCCCccccHhhcCCC
Confidence 211 0 01135789999999999999999999999999999999999999754
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=812.54 Aligned_cols=575 Identities=19% Similarity=0.242 Sum_probs=473.8
Q ss_pred CCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-cc
Q 004034 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SE 180 (778)
Q Consensus 102 ~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~ 180 (778)
...++|||++.+.. ++.+...++|++++|+++++++++++|..+|++++++|++.++++.. +... .... ++ .+
T Consensus 3011 ~~~~~~~l~l~~~~---~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~l~~-l~~~-~~~~-~~~~~ 3084 (3956)
T PRK12467 3011 REQTNYPLTLAVGL---GDTLELEFSYDRQHFDAAAIERLAESFDRLLQAMLNNPAARLGELPT-LAAH-ERRQ-VLHAW 3084 (3956)
T ss_pred cccccCceEEEecc---CcceeEEEEechhhCCHHHHHHHHHHHHHHHHHHHhCcCCchhhccC-CCHH-HHHH-HHHhh
Confidence 34579999988763 34578899999999999999999999999999999999999988742 1111 1111 10 01
Q ss_pred cccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 004034 181 NLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260 (778)
Q Consensus 181 ~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V 260 (778)
+.... .+ ....+++++|+++++ ++||++|+++. ++++||+||+++++++|+.|+++|+++|++|
T Consensus 3085 ~~~~~------~~---~~~~~~~~l~~~~a~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~gv~~g~~V 3148 (3956)
T PRK12467 3085 NATAA------AY---PSERLVHQLIEAQVA-RTPEAPALVFG------DQQLSYAELNRRANRLAHRLIAIGVGPDVLV 3148 (3956)
T ss_pred ccCCC------CC---CccccHHHHHHHHHH-hCCCcceEeeC------CcccCHHHHHHHHHHHHHHHHHcCCCCCCeE
Confidence 11000 00 111368999999999 89999999987 6889999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCC
Q 004034 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 340 (778)
Q Consensus 261 ai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (778)
+|+++|++++++++|||+++|++|+|++|.+|.+++.+++++++++++|+++..... +.. ..
T Consensus 3149 ~l~~~~s~~~vv~~lavl~aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~-------------~~~-----~~ 3210 (3956)
T PRK12467 3149 GVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQ-------------LPA-----PA 3210 (3956)
T ss_pred EEEeCCCHHHHHHHHHHHhhCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhh-------------ccc-----cc
Confidence 999999999999999999999999999999999999999999999999998653210 000 00
Q ss_pred ccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHH
Q 004034 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (778)
Q Consensus 341 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~ 420 (778)
...++.++... + .......+.....++++|||+|||||||+||||+++|+++ .+...+.
T Consensus 3211 ~~~~~~~~~~~----------------~----~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l-~~~~~~~ 3269 (3956)
T PRK12467 3211 GDTALTLDRLD----------------L----NGYSENNPSTRVMGENLAYVIYTSGSTGKPKGVGVRHGAL-ANHLCWI 3269 (3956)
T ss_pred CCceeeecchh----------------h----cccCCCCCcccCCCCceEEEEEccCCCCCcceeeehhHHH-HHHHHHH
Confidence 11122222111 0 0011122233467899999999999999999999999995 5555666
Q ss_pred HHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC
Q 004034 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (778)
Q Consensus 421 ~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~ 500 (778)
...+++.++|++++++|++|+.+ ++.++.+|+.|+++++.++ ...++..+++.|++++||++.++|++++.|++...
T Consensus 3270 ~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~l~i~~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~ 3346 (3956)
T PRK12467 3270 AEAYELDANDRVLLFMSFSFDGA-QERFLWTLICGGCLVVRDN--DLWDPEELWQAIHAHRISIACFPPAYLQQFAEDAG 3346 (3956)
T ss_pred HHhcCCCcCCEEEEecCccHhHH-HHHHHHHHhCCCEEEECCc--ccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhccc
Confidence 77889999999999999999987 7889999999999999872 33589999999999999999999999999987532
Q ss_pred cccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceE
Q 004034 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQP 577 (778)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~ 577 (778)
..++++||.+++|||+++++++++|.+.++ ++.++|.||+||+++.++...... ......++|+|++|+++
T Consensus 3347 ----~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~ 3420 (3956)
T PRK12467 3347 ----GADCASLDIYVFGGEAVPPAAFEQVKRKLK--PRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSI 3420 (3956)
T ss_pred ----ccCCCCceEEEEecCCCCHHHHHHHHHhCC--CCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEE
Confidence 236789999999999999999999988876 478999999999987655332111 11234789999999999
Q ss_pred EEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC-----CCCeEEcCcEEEEecCCeEEEEeecCCEEE
Q 004034 578 VIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652 (778)
Q Consensus 578 ~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~-----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Ik 652 (778)
+|+|++++++|.|+.|||+|+| |++++||+|+++.+.+.|..+ ..+||||||+|++++||+|+|+||+|||||
T Consensus 3421 ~v~d~~~~~vp~G~~GEL~i~G--~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~ik 3498 (3956)
T PRK12467 3421 YVLDGQLNPVPVGVAGELYIGG--VGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVK 3498 (3956)
T ss_pred EEECCCCCCCCCCCCceEEEcc--hhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecCCCcEEEeccccceEe
Confidence 9999999999999999999999 899999999998888877542 234999999999999999999999999999
Q ss_pred eCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCC
Q 004034 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPG 732 (778)
Q Consensus 653 i~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~ 732 (778)
++|+||+|+|||++|.+||+|.+|+|++..+ ..++.++|||+....... ..++|+++++++||.||+|..|+++++
T Consensus 3499 i~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~---~~~~l~~~l~~~Lp~y~vP~~~~~l~~ 3574 (3956)
T PRK12467 3499 IRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGD---WRETLRDHLAASLPDYMVPAQLLVLAA 3574 (3956)
T ss_pred eceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCcc---cHHHHHHHHhccCChhhCCCeeeeecc
Confidence 9999999999999999999999999998754 467899999998764322 267899999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHhc
Q 004034 733 LPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 733 lP~T~sGKi~R~~L~~~~~~ 752 (778)
||+|+||||||++|++....
T Consensus 3575 lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467 3575 MPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred CCCCCCCccchhhcCCCCcc
Confidence 99999999999999987643
|
|
| >KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-76 Score=614.35 Aligned_cols=523 Identities=23% Similarity=0.298 Sum_probs=447.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++++-.++ ..||+.|+++..+ +.++||+|+.+.+.++|..|.++|+++||||+|..||+.+|+..+|||+++
T Consensus 51 Tigq~l~~~t~-~v~dkea~Vf~~e----g~R~Tf~~~~~ev~slAaGll~lGL~kGDrVgvwgpN~~~w~l~~lA~A~A 125 (596)
T KOG1177|consen 51 TIGQLLETTTE-RVPDKEAAVFDHE----GIRLTFSEFVSEVESLAAGLLSLGLKKGDRVGVWGPNSYEWVLCQLACARA 125 (596)
T ss_pred cHHHHHHHHhh-ccCcceEEEEeec----cchhhHHHHHHHHHHHHhhHHhhcCCCCCEEEEecCChHHHHHHHHHHHHh
Confidence 67888888888 8999999999843 677999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhh---------cCCCccEEEEEccCC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK---------SGISVDVCLTYENQS 351 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~vi~~~~~~ 351 (778)
|.+.+++||.|+.+++++.|+..+++++|+...+.. -.+.+.+.++..+... .-+.+++++..++..
T Consensus 126 G~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~----~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~ 201 (596)
T KOG1177|consen 126 GLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKT----QNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDH 201 (596)
T ss_pred ceEEeccCcccccHHHHHHHhhcCeEEEEccchhhh----chHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCC
Confidence 999999999999999999999999999998876532 2233444444443321 124556666555332
Q ss_pred ccccccccCCCCcccchhhccCCCCC------CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKYPT------KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (778)
. ..+...++|.+..... ..-..+..|+|++.|.|||||||.|||+.+||-|++.+ .......++
T Consensus 202 ~---------~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nn-a~~vg~r~g 271 (596)
T KOG1177|consen 202 P---------LPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNN-ARAVGARAG 271 (596)
T ss_pred c---------CCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhh-HHHHHHHhC
Confidence 1 1123334444433221 11124567899999999999999999999999996554 445566789
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+...+++++..|++|..|.+..++.+|..|+|+|++.+. +++...+++|.++++|.++++|+++..|++.+. ..+
T Consensus 272 ~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~---f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~--~~~ 346 (596)
T KOG1177|consen 272 YNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPS---FDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQ--KQQ 346 (596)
T ss_pred cCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCC---CChHHHHHHHHhhceEEEecChHHHHHHhcchh--hcc
Confidence 999889999999999999999999999999999998654 699999999999999999999999999998765 567
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCC-CCCCCCcCcCcCCceEEEECCCC
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW-PQKPGSATFPFFGVQPVIVDEKG 584 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~-~~~~~~~G~p~~g~~~~Ivd~~g 584 (778)
.+++++|.++.||.++++++.+.+.+...- ..+...||+||++...+.+..++. ..+..++|+.+++.+..|+|.+|
T Consensus 347 ~~~s~lr~~vigGa~~s~eLlk~iv~~~~m--~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g 424 (596)
T KOG1177|consen 347 VDLSSLRKGVIGGAPVSPELLKLIVNQMNM--KDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDG 424 (596)
T ss_pred CchhhhhhheeCCCCCCHHHHHHHHHhhCc--eeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCC
Confidence 899999999999999999999999886542 358899999999988777766552 23457899999999999999999
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHH
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE 664 (778)
.++|-|+.|||+++| +..|.|||++++.+.++.-. +.||+|||+|.+|++|+++++||.+|+|+.+|.+|+|.|||
T Consensus 425 ~~v~~~~~Gel~iRG--Y~tMl~Ywg~~~kT~eti~~--drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP~ElE 500 (596)
T KOG1177|consen 425 SEVPLGTKGELLIRG--YSTMLGYWGEEEKTKETIGN--DRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYPTELE 500 (596)
T ss_pred CccccCCCceEEEEe--chhheeecCCcccchhhccc--ccceecCceEEEcCCCcEEEEEcccCeEEeCCcccChHHHH
Confidence 999999999999999 89999999999888876543 67999999999999999999999999999999999999999
Q ss_pred HHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHH
Q 004034 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744 (778)
Q Consensus 665 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~ 744 (778)
+.|.+||.|.++.||+++|+.-|+.++|+|.++.+.... -..++|+.+++.+|..|.+|+.|+++++||+|.+|||.|-
T Consensus 501 ~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~-~t~E~lKa~Ck~klaHFKiPky~vf~~~FPlT~tGKIqKF 579 (596)
T KOG1177|consen 501 DFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGK-TTAETLKAMCKGKLAHFKIPKYFVFVDEFPLTTTGKIQKF 579 (596)
T ss_pred HHHhhCCCeeeEEEEccCCCcccceEEEEEEeecccccc-ccHHHHHHHHhcccccccCCcEEEEeccCcccccccchhH
Confidence 999999999999999999999999999999998776531 2378999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 004034 745 ILRKIASRQL 754 (778)
Q Consensus 745 ~L~~~~~~~~ 754 (778)
++++++.++.
T Consensus 580 eir~~~k~~l 589 (596)
T KOG1177|consen 580 EIREMSKGHL 589 (596)
T ss_pred HHHHHHHhhc
Confidence 9999998653
|
|
| >PRK12467 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-76 Score=807.66 Aligned_cols=585 Identities=19% Similarity=0.255 Sum_probs=477.5
Q ss_pred CCCCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCccccc
Q 004034 100 FPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCS 179 (778)
Q Consensus 100 ~~~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 179 (778)
...+.++|||++.+. +..+++...++|++++|+++++.+++++|..+|++++++|++.++++.. +. ..+... ++.
T Consensus 1487 ~~~~~~~~dL~l~v~--~~~~~l~l~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~l~~-~~-~~~~~~-~~~ 1561 (3956)
T PRK12467 1487 WESQTAQFDLTLDTY--ESSEGLQASLTYATDLFEASTIERLAGHWLNLLQGLVADPERRLGELDL-LD-EAERRQ-ILE 1561 (3956)
T ss_pred cCCcccccceEEEEE--ecCCeEEEEEEEeCCcCCHHHHHHHHHHHHHHHHHHhhCccCceeeccc-cc-hHHhhh-hHH
Confidence 345678999999987 4445688899999999999999999999999999999999999888742 11 111111 110
Q ss_pred -ccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCC
Q 004034 180 -ENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258 (778)
Q Consensus 180 -~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd 258 (778)
++... .+++. ..+++++|+++++ ++||++|+++. ++++||+||+++++++|+.|+++|+++|+
T Consensus 1562 ~~~~~~-------~~~~~--~~~~~~~~~~~a~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~~~ 1625 (3956)
T PRK12467 1562 GWNATH-------TGYPL--ARLVHQLIEDQAA-ATPEAVALVFG------EQELTYGELNRRANRLAHRLIALGVGPEV 1625 (3956)
T ss_pred hhcCCc-------cCCCc--cccHHHHHHHHHH-hCCCCeEEEeC------CcEEeHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 11110 11111 1268999999999 89999999986 68899999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcC
Q 004034 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSG 338 (778)
Q Consensus 259 ~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (778)
+|+|+++|++++++++|||+|+|++|+|+||.+|.+++.+++++++++++|+++..... +...
T Consensus 1626 ~V~l~~~~s~~~vv~~lavlkaG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~-------------~~~~---- 1688 (3956)
T PRK12467 1626 LVGIAVERSLEMVVGLLAILKAGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQAR-------------LPLP---- 1688 (3956)
T ss_pred EEEEEccCCHHHHHHHHHhhccCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhh-------------Cccc----
Confidence 99999999999999999999999999999999999999999999999999997653210 0000
Q ss_pred CCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH
Q 004034 339 ISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT 418 (778)
Q Consensus 339 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~ 418 (778)
... .++.++.... + +.......+.....+++++||+|||||||+||||+++|+++ .+...
T Consensus 1689 ~~~-~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKGV~~th~~l-~~~~~ 1748 (3956)
T PRK12467 1689 DGL-RSLVLDQEDD---------------W---LEGYSDSNPAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGAL-VNRLC 1748 (3956)
T ss_pred cCC-cEEEeccccc---------------h---hccCCCCCCCCCCCCcCcEEEEECCCcCCCCCEEEEcCHHH-HHHHH
Confidence 011 1222221110 0 01111122233456899999999999999999999999995 45555
Q ss_pred HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 419 TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 419 ~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
+....+++.++|++++++|++|+.+ ++++|.+|++|+++++.+... ..++..+++.|++++||++.++|++++.|.+.
T Consensus 1749 ~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~L~~G~~lvi~~~~~-~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~ 1826 (3956)
T PRK12467 1749 ATQEAYQLSAADVVLQFTSFAFDVS-VWELFWPLINGARLVIAPPGA-HRDPEQLIQLIERQQVTTLHFVPSMLQQLLQM 1826 (3956)
T ss_pred HHHHhcCCCcccEEEEecCccHHHH-HHHHHHHHhCCCEEEEcChhh-cCCHHHHHHHHHHcCCeEEECCHHHHHHHHhh
Confidence 6677889999999999999999997 678999999999999987543 34899999999999999999999999999875
Q ss_pred CCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC---CCCCCCCCcCcCcCCc
Q 004034 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---AWPQKPGSATFPFFGV 575 (778)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~---~~~~~~~~~G~p~~g~ 575 (778)
.. ...++++||.+++|||++++++++.|.+.++ ++.++|.||+||+++.++..... .......++|+|++|+
T Consensus 1827 ~~---~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~ 1901 (3956)
T PRK12467 1827 DE---QVEHPLSLRRVVCGGEALEVEALRPWLERLP--DTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANL 1901 (3956)
T ss_pred cc---ccccCCCceEEEEccccCCHHHHHHHHHhCC--CCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCC
Confidence 32 2235789999999999999999999988876 36799999999998765533211 1112357899999999
Q ss_pred eEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC-----CCCeEEcCcEEEEecCCeEEEEeecCCE
Q 004034 576 QPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSRDKDGYHWLTGRVDDV 650 (778)
Q Consensus 576 ~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~-----~~G~yrTGDl~~~~~dG~l~~~GR~dd~ 650 (778)
+++|+|++++++|.|+.|||+|+| +++++||+|+++.+.+.|... ..+||||||+|++++||.|+|+||+|||
T Consensus 1902 ~~~vld~~~~~vp~G~~GEl~i~G--~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~D~q 1979 (3956)
T PRK12467 1902 STYILDASLNPVPIGVAGELYLGG--VGLARGYLNRPALTAERFVADPFGTVGSRLYRTGDLARYRADGVIEYLGRIDHQ 1979 (3956)
T ss_pred EEEEECCCCCCCCCCCceEEEecc--ccccccccCChhhhhhhCcCCCCCCCCccceeccceEEECCCCCEEEecccCce
Confidence 999999999999999999999999 899999999999888877532 2349999999999999999999999999
Q ss_pred EEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCC-----HHHHHHHHHHHHhhcCCCcccc
Q 004034 651 INVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-----EELRKSLVLAVRKQIGAFAAPD 725 (778)
Q Consensus 651 Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~-----~~l~~~l~~~l~~~Lp~~~~P~ 725 (778)
||++|+||+|+|||++|.+||+|.+|+|++.+ ...++.++|||+..++.... ....++|+++++++||.||+|.
T Consensus 1980 Vki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~ 2058 (3956)
T PRK12467 1980 VKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVDDDEAQVALRAILKNHLKASLPEYMVPA 2058 (3956)
T ss_pred EEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCcccccccccccccHHHHHHHHHhhCchhhCch
Confidence 99999999999999999999999999999886 44678899999986543211 1235789999999999999999
Q ss_pred EEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 726 KIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 726 ~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.|+++++||+|+||||||++|++....
T Consensus 2059 ~~~~l~~lP~t~~GKidr~~L~~~~~~ 2085 (3956)
T PRK12467 2059 HLVFLARMPLTPNGKLDRKALPAPDAS 2085 (3956)
T ss_pred hhhhhhcCCCCCCCCcchhhCCCCccc
Confidence 999999999999999999999876543
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-75 Score=739.65 Aligned_cols=572 Identities=20% Similarity=0.269 Sum_probs=461.4
Q ss_pred ccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCccccccccccc
Q 004034 106 KISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVR 185 (778)
Q Consensus 106 kfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (778)
.+||.+.+...+ ++.+...++|++++|+++++.+++++|..+|++++++|+.+++++.. +...+ ... +...+....
T Consensus 378 ~~dl~l~~~~~~-~~~l~~~~~y~~~~f~~~~i~~l~~~~~~ll~~~~~~p~~~i~~~~~-~~~~~-~~~-~~~~~~~~~ 453 (1296)
T PRK10252 378 VNDLELALFPDE-HGGLSIEILANPQRYDEATLIAHAERLKALIAQFAADPALLCGDVDI-LLPGE-YAQ-LAQVNATAV 453 (1296)
T ss_pred cCCeEEEEEECC-CCcEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCCCCChhhcCC-CCHHH-HHH-HHHhcCCCC
Confidence 468877765322 35678899999999999999999999999999999999999988732 11110 000 000000000
Q ss_pred CCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 004034 186 KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265 (778)
Q Consensus 186 ~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~ 265 (778)
.+ . ..+++++|+++++ .+||++|+++. .+++||+||.++++++|+.|++.|+++||+|+|+++
T Consensus 454 ------~~---~-~~~l~~~~~~~~~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~la~~L~~~g~~~g~~V~l~~~ 516 (1296)
T PRK10252 454 ------EI---P-ETTLSALVAQQAA-KTPDAPALADA------RYQFSYREMREQVVALANLLRERGVKPGDSVAVALP 516 (1296)
T ss_pred ------CC---C-cCCHHHHHHHHHH-hCCCCeEEEcC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Confidence 11 1 1257899999998 89999999986 678999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004034 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (778)
Q Consensus 266 ~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 345 (778)
|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++...... ... ..+. ++
T Consensus 517 ~~~~~i~~~la~~~~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~-------------~~~----~~~~-~~ 578 (1296)
T PRK10252 517 RSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRF-------------ADV----PDLT-SL 578 (1296)
T ss_pred CCHHHHHHHHHHHHhCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhc-------------ccC----CCce-ee
Confidence 99999999999999999999999999999999999999999999986532110 000 0010 11
Q ss_pred EEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC
Q 004034 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (778)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (778)
.++.. ... ....+.....+++++||+|||||||+||||+++|+++ .+...+....++
T Consensus 579 ~~~~~---------------------~~~-~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~~h~~l-~~~~~~~~~~~~ 635 (1296)
T PRK10252 579 CYNAP---------------------LAP-QGAAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI-VNRLLWMQNHYP 635 (1296)
T ss_pred ecccc---------------------ccc-ccCCCCCCCCCCCeEEEEECCCCCCCCCEEEeccHHH-HHHHHHHHHhcC
Confidence 11100 000 0011112236789999999999999999999999995 555666777899
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+.++|++++.+|++|+.+ ++.+|.+|++|+++++.+... ..++..+++.|++++||++.++|++++.+++........
T Consensus 636 ~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~-~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~ 713 (1296)
T PRK10252 636 LTADDVVLQKTPCSFDVS-VWEFFWPFIAGAKLVMAEPEA-HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGAR 713 (1296)
T ss_pred CCCCCEEEEeCCcchhhh-HHHHHHHHhCCCEEEECChhc-cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhcccccc
Confidence 999999999999999987 678999999999999976533 358999999999999999999999999988764321222
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC-----CCCCCCCcCcCcCCceEEEE
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-----WPQKPGSATFPFFGVQPVIV 580 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~-----~~~~~~~~G~p~~g~~~~Iv 580 (778)
..+++||.+++|||++++++++.|.+.++ ++++|.||+||++..++...... ....+.++|+|++|++++|+
T Consensus 714 ~~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~ 790 (1296)
T PRK10252 714 QSCASLRQVFCSGEALPADLCREWQQLTG---APLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRIL 790 (1296)
T ss_pred ccCCCccEEEEecCCCCHHHHHHHHhcCC---CEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEE
Confidence 34689999999999999999999988765 78999999999987554322111 12345789999999999999
Q ss_pred CCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC----CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCce
Q 004034 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGH 656 (778)
Q Consensus 581 d~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ 656 (778)
|+++++++.|+.|||+|+| +++++||+++++.+.+.|... ..+||+|||+|++++||+++|+||.|||||++|+
T Consensus 791 d~~~~~~~~g~~Gel~i~g--~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ 868 (1296)
T PRK10252 791 DARMRPVPPGVAGDLYLTG--IQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQ 868 (1296)
T ss_pred CCCCCCCCCCCceEEEecc--cccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeE
Confidence 9999999999999999999 899999999998877776532 3459999999999999999999999999999999
Q ss_pred eeCHHHHHHHHhcCCccceEEEEEEe----c--CCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEEC
Q 004034 657 RIGTAEVESALVSHPQCAEAAVVGVE----H--EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWA 730 (778)
Q Consensus 657 rI~~~eIE~~L~~~p~V~ea~Vv~~~----~--~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v 730 (778)
||+|.|||++|.+||+|.+|+|+++. + ......+++||+...+...+ .++|+++++++||.||+|..++.+
T Consensus 869 ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~~~~~~~---~~~l~~~l~~~Lp~~~~P~~~~~~ 945 (1296)
T PRK10252 869 RIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLD---TSALQAQLRERLPPHMVPVVLLQL 945 (1296)
T ss_pred EecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcCCCCCCC---HHHHHHHHHhhCchhcCCcEEEEe
Confidence 99999999999999999999887653 1 11224799999987654333 578999999999999999999999
Q ss_pred CCCCCCCCCcccHHHHHHH
Q 004034 731 PGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 731 ~~lP~T~sGKi~R~~L~~~ 749 (778)
++||+|+||||||++|++.
T Consensus 946 ~~lP~t~~GKidr~~L~~~ 964 (1296)
T PRK10252 946 DQLPLSANGKLDRKALPLP 964 (1296)
T ss_pred cCCCCCCCcChhHHhcCCC
Confidence 9999999999999999864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-75 Score=802.36 Aligned_cols=582 Identities=19% Similarity=0.224 Sum_probs=473.2
Q ss_pred CCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-ccc
Q 004034 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (778)
Q Consensus 103 ~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (778)
..++|||++.+.++ +.+...+.|++++|++.++++++++|..+|++++++|++.++++.. +. ..+... +. .++
T Consensus 3637 ~~~~~~l~~~~~~~---~~l~~~l~y~~~~~~~~~~~~l~~~f~~~L~~l~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~ 3710 (4334)
T PRK05691 3637 THTNFPLTAVCYPG---DDLGLHLSYDQRYFDAPTVERLLGEFKRLLLALVQGFHGDLSELPL-LG-EQERDF-LLDGCN 3710 (4334)
T ss_pred cccCCCeEEEEecC---CceEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcCCChhhcCC-CC-HHHHHH-HHHhhC
Confidence 45789998876533 3577899999999999999999999999999999999999988842 11 111110 00 001
Q ss_pred ccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004034 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (778)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Va 261 (778)
.... .+ ....+++++|+++++ ++||++|+++. +.++||+||+++++++|+.|+++||++|++|+
T Consensus 3711 ~~~~------~~---~~~~~~~~~~~~~~~-~~p~~~Av~~~------~~~~tY~eL~~~~~~la~~L~~~gv~~~~~V~ 3774 (4334)
T PRK05691 3711 RSER------DY---PLEQSYVRLFEAQVA-AHPQRIAASCL------DQQWSYAELNRAANRLGHALRAAGVGVDQPVA 3774 (4334)
T ss_pred CccC------CC---ccccCHHHHHHHHHH-hCCCceEEEcC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 0000 00 111278999999999 99999999987 67899999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004034 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (778)
Q Consensus 262 i~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (778)
|+++++++++++||||+|+|++||||||.+|.+|+.+++++++++++|+++..... .......+.. ...
T Consensus 3775 v~~~~s~~~~v~~lavlkaG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~---------~~~~~~~~~~--~~~ 3843 (4334)
T PRK05691 3775 LLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQ---------ARALLDELGC--ANR 3843 (4334)
T ss_pred EEeCCCHHHHHHHHHHHhhCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccch---------hhhhhccccc--ccc
Confidence 99999999999999999999999999999999999999999999999998765321 0011111100 001
Q ss_pred cEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Q 004034 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (778)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (778)
..+++.+... ....+...+.....++++|||+|||||||+||||+++|+++ .+...+..
T Consensus 3844 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~-~~~~~~~~ 3902 (4334)
T PRK05691 3844 PRLLVWEEVQ--------------------AGEVASHNPGIYSGPDNLAYVIYTSGSTGLPKGVMVEQRGM-LNNQLSKV 3902 (4334)
T ss_pred cceeeecccc--------------------cccccccCCCCCCCCCceEEEEECCCCCCCCCEEEeehHHH-HHHHHHHH
Confidence 1122211110 00001112233457899999999999999999999999995 45555566
Q ss_pred HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 422 ~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
..++++++|+++++++++|+.+ +++++.+|+.|+++++++.... .++..+++.+++++||++.++|++++.|+....
T Consensus 3903 ~~~~~~~~~~~~~~~s~~fd~s-~~~~~~~l~~G~~l~i~~~~~~-~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~~- 3979 (4334)
T PRK05691 3903 PYLALSEADVIAQTASQSFDIS-VWQFLAAPLFGARVEIVPNAIA-HDPQGLLAHVQAQGITVLESVPSLIQGMLAEDR- 3979 (4334)
T ss_pred HhcCCCccceEEEecCCchhHH-HHHHHHHHhCCCEEEEcCcccc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhcc-
Confidence 6789999999999999999997 7899999999999999876443 489999999999999999999999999886532
Q ss_pred ccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC--CCCCCCCcCcCcCCceEEE
Q 004034 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (778)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~g~~~~I 579 (778)
..+++||.+++|||++++++.+.|.+.++ ++.++|.||+||++..++...... ......++|+|++|++++|
T Consensus 3980 ----~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v 4053 (4334)
T PRK05691 3980 ----QALDGLRWMLPTGEAMPPELARQWLQRYP--QIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYL 4053 (4334)
T ss_pred ----ccCCCceEEEecCCcCCHHHHHHHHHhCC--CCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEE
Confidence 25689999999999999999999988765 578999999999997655332111 1223457999999999999
Q ss_pred ECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC-----CCCeEEcCcEEEEecCCeEEEEeecCCEEEeC
Q 004034 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS 654 (778)
Q Consensus 580 vd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~-----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~ 654 (778)
+|+.++++|.|+.|||+|+| |++++||+|+++.+.+.|..+ .++||||||+|++++||.|+|+||+|+|||++
T Consensus 4054 ~d~~~~~~p~g~~GEL~i~G--~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~ 4131 (4334)
T PRK05691 4054 LDEALELVPLGAVGELCVAG--TGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIR 4131 (4334)
T ss_pred ECCCCCCCCCCCceEEEEec--ccccccccCCcccchhhcccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEec
Confidence 99999999999999999999 999999999999988887642 24699999999999999999999999999999
Q ss_pred ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCC
Q 004034 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 734 (778)
Q Consensus 655 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP 734 (778)
|+||+++|||++|.+||+|.+|+|+... ...++.++|||+............++|+.+|++.||+||+|..|+++++||
T Consensus 4132 G~riel~eIE~~l~~~~~v~~a~v~~~~-~~~~~~l~a~~~~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP 4210 (4334)
T PRK05691 4132 GYRIELGEIEARLHEQAEVREAAVAVQE-GVNGKHLVGYLVPHQTVLAQGALLERIKQRLRAELPDYMVPLHWLWLDRLP 4210 (4334)
T ss_pred eEEecHHHHHHHHHhCCCccEEEEEEec-CCCCcEEEEEEeCCcccccchHHHHHHHHHHHhhCChhhcCcceeecccCC
Confidence 9999999999999999999999887554 446788999999876544334456889999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHH
Q 004034 735 KTRSGKIMRRILRKIA 750 (778)
Q Consensus 735 ~T~sGKi~R~~L~~~~ 750 (778)
+|+||||||++|+++.
T Consensus 4211 ~t~~GKidr~~L~~~~ 4226 (4334)
T PRK05691 4211 LNANGKLDRKALPALD 4226 (4334)
T ss_pred CCCCCcccHhhcCCCc
Confidence 9999999999998763
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-75 Score=801.10 Aligned_cols=577 Identities=20% Similarity=0.263 Sum_probs=475.6
Q ss_pred CCCCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-
Q 004034 100 FPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC- 178 (778)
Q Consensus 100 ~~~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 178 (778)
.....++|||++.+. +..+.+...++|++++|+++++.++.++|..+|+.++++|++.+.++.. +. ..+... +.
T Consensus 424 ~~~~~~~~dL~l~v~--~~~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~i~~~p~~~i~~l~~-~~-~~~~~~-~~~ 498 (5163)
T PRK12316 424 WKSRTTQFDLTLDTY--EKGGRLHAALTYATDLFEARTVERMARHWQNLLRGMVENPQARVDELPM-LD-AEERGQ-LVE 498 (5163)
T ss_pred cCCCccceeEEEEEE--EcCCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhccccccccCCC-CC-HHHHHH-HHH
Confidence 345678999999877 5557788899999999999999999999999999999999999988742 11 111111 00
Q ss_pred cccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCC
Q 004034 179 SENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGD 258 (778)
Q Consensus 179 ~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd 258 (778)
.++.... .+ ....+++++|+++++ ++||++|+++. ++++||+||.++++++|+.|++.|+++|+
T Consensus 499 ~~~~~~~------~~---~~~~~~~~~~~~~a~-~~p~~~A~~~~------~~~~TY~eL~~~~~~lA~~L~~~gv~~g~ 562 (5163)
T PRK12316 499 GWNATAA------EY---PLQRGVHRLFEEQVE-RTPEAPALAFG------EETLDYAELNRRANRLAHALIERGVGPDV 562 (5163)
T ss_pred HhcCccc------cC---CCCCCHHHHHHHHHH-HCCCCeEEEeC------CceEcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 0010000 00 011368999999999 89999999986 68999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcC
Q 004034 259 AVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSG 338 (778)
Q Consensus 259 ~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (778)
+|+|+++|++++++++|||+++|++++|++|.+|.+++.+++++++++++|++...... +..
T Consensus 563 ~V~l~~~~s~~~i~~~la~~~aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~-------------~~~----- 624 (5163)
T PRK12316 563 LVGVAMERSIEMVVALLAILKAGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRK-------------LPL----- 624 (5163)
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhh-------------CCc-----
Confidence 99999999999999999999999999999999999999999999999999998653210 000
Q ss_pred CCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH
Q 004034 339 ISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT 418 (778)
Q Consensus 339 ~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~ 418 (778)
.....++.++.... + +.......+.....+++++||+|||||||+||||+++|+++ .+...
T Consensus 625 ~~~~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l-~~~~~ 685 (5163)
T PRK12316 625 AAGVQVLDLDRPAA---------------W---LEGYSEENPGTELNPENLAYVIYTSGSTGKPKGAGNRHRAL-SNRLC 685 (5163)
T ss_pred ccCceEEEecCcch---------------h---hccCCCCCCCCCCCCCCeEEEEECCCcCCCCCEeeEcCHHH-HHHHH
Confidence 00111232222110 0 01111122233456899999999999999999999999995 45556
Q ss_pred HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 419 TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 419 ~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
+....+++.++|++++++|++|+.+ ++.++.+|++|+++++++.... .++..+++.|++++||++.++|++++.|++.
T Consensus 686 ~~~~~~~~~~~d~~l~~~p~~fd~~-~~~~~~~L~~G~~l~i~~~~~~-~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~ 763 (5163)
T PRK12316 686 WMQQAYGLGVGDTVLQKTPFSFDVS-VWEFFWPLMSGARLVVAAPGDH-RDPAKLVELINREGVDTLHFVPSMLQAFLQD 763 (5163)
T ss_pred HHHHhcCCCCCCEEEeeCCeehHHH-HHHHHHHHhCCCEEEECCcccc-CCHHHHHHHHHHcCCeEEEeCHHHHHHHHhc
Confidence 6677899999999999999999998 6789999999999999865433 5899999999999999999999999999875
Q ss_pred CCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEE
Q 004034 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (778)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 578 (778)
.. ..++++||.+++|||++++++++++.+.++ +++++|.||+||++..++..........+.++|+|++|++++
T Consensus 764 ~~----~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~ 837 (5163)
T PRK12316 764 ED----VASCTSLRRIVCSGEALPADAQEQVFAKLP--QAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACY 837 (5163)
T ss_pred cc----cccCCCccEEEEeeccCCHHHHHHHHHhCC--CCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEE
Confidence 32 236789999999999999999999988775 478999999999986544332222223567899999999999
Q ss_pred EECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC----CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeC
Q 004034 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS 654 (778)
Q Consensus 579 Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~----~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~ 654 (778)
|+|++++++|.|+.|||+|+| |++++||+++++.+.+.|.. ..++||+|||+|++++||.|+|+||+|||||++
T Consensus 838 i~d~~~~~~p~G~~GEl~i~G--~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~ 915 (5163)
T PRK12316 838 ILDANLEPVPVGVLGELYLAG--RGLARGYHGRPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLR 915 (5163)
T ss_pred EECCCCCCCCCCCceEEEecc--cccChhhCCChhhhhhhCCCCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEc
Confidence 999999999999999999999 89999999999988887753 234699999999999999999999999999999
Q ss_pred ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCC
Q 004034 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLP 734 (778)
Q Consensus 655 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP 734 (778)
|+||+|.|||++|.+||+|.+|+|++.+ ++.++|||++.++.... .++|+++++++||+||+|+.|+++++||
T Consensus 916 G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~i~~v~~lP 988 (5163)
T PRK12316 916 GLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDW---REALKAHLAASLPEYMVPAQWLALERLP 988 (5163)
T ss_pred eEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCC---HHHHHHHHHhhCCCccCCCeEEEHhhCC
Confidence 9999999999999999999999999875 67899999987654332 5789999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHh
Q 004034 735 KTRSGKIMRRILRKIAS 751 (778)
Q Consensus 735 ~T~sGKi~R~~L~~~~~ 751 (778)
+|+||||||++|++...
T Consensus 989 ~t~~GKidr~~L~~~~~ 1005 (5163)
T PRK12316 989 LTPNGKLDRKALPAPEA 1005 (5163)
T ss_pred CCCCCChhHHhhcCccc
Confidence 99999999999987654
|
|
| >PRK12316 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-74 Score=795.05 Aligned_cols=568 Identities=19% Similarity=0.255 Sum_probs=469.4
Q ss_pred CCCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-c
Q 004034 101 PSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-S 179 (778)
Q Consensus 101 ~~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~ 179 (778)
....++|||.+.+. +..+++...++|++++|+++++.+++++|..+|++++++|+..++++.. +. ..+... ++ .
T Consensus 2971 ~~~~~~~dL~l~v~--~~~~~l~~~~~y~~~~~~~~~i~~l~~~f~~lL~~l~~~p~~~i~~l~~-~~-~~~~~~-~~~~ 3045 (5163)
T PRK12316 2971 DGAATQFDLALDTW--ESAEGLGASLTYATDLFDARTVERLARHWQNLLRGMVENPQRSVDELAM-LD-AEERGQ-LLEA 3045 (5163)
T ss_pred cCCccceeeEEEEE--ecCCcEEEEEEECcCCCCHHHHHHHHHHHHHHHHHHHhCCCCchhhccC-CC-HHHHHH-HHHH
Confidence 34568899999877 4445688899999999999999999999999999999999999988742 11 101000 00 0
Q ss_pred ccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004034 180 ENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (778)
Q Consensus 180 ~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~ 259 (778)
++.... .. ....+++++|+++++ ++||++|+.+. ++.+||+||+++++++|++|++.|+++|++
T Consensus 3046 ~~~~~~------~~---~~~~~~~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~~~~lA~~L~~~gv~~~~~ 3109 (5163)
T PRK12316 3046 WNATAA------EY---PLERGVHRLFEEQVE-RTPDAVALAFG------EQRLSYAELNRRANRLAHRLIERGVGPDVL 3109 (5163)
T ss_pred hCCCCc------CC---CCcCCHHHHHHHHHH-hCCCCeeEeeC------CeEEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 110000 00 111268999999999 89999999987 689999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004034 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (778)
Q Consensus 260 Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (778)
|+|++++++++++++|||+|+|++|||++|.+|.+|+.+++++++++++|+++.... .. .
T Consensus 3110 V~l~~~~s~~~iv~~lail~aGa~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~---------------~~-----~ 3169 (5163)
T PRK12316 3110 VGVAVERSLEMVVGLLAILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRL---------------PL-----A 3169 (5163)
T ss_pred EEEEccCCHHHHHHHHHHHHhCceeeecCCCCcHHHHHHHHHhcCCCEEEeCccccC---------------Cc-----c
Confidence 999999999999999999999999999999999999999999999999998764310 00 0
Q ss_pred CccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH
Q 004034 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (778)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~ 419 (778)
....++.++... .......+.....++++|||+|||||||+||||+++|+++ .+...+
T Consensus 3170 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ayii~TSGSTG~PKgV~~~h~~l-~~~~~~ 3227 (5163)
T PRK12316 3170 QGVQVLDLDRGD---------------------ENYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSAL-SNHLCW 3227 (5163)
T ss_pred CCccEEEecccc---------------------ccccccCCCCCCCCCCeEEEEeCCCCCCCCCEEEEccHHH-HHHHHH
Confidence 011123222210 0001112233456899999999999999999999999995 555666
Q ss_pred HHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcC
Q 004034 420 FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499 (778)
Q Consensus 420 ~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~ 499 (778)
+...+++.++|+++++++++|+.+ ++++|.+|+.|+++++.+... ..++..+.+.++++++|++..+|++++.+++..
T Consensus 3228 ~~~~~~~~~~d~~l~~~~~~fd~~-~~~i~~~L~~G~~l~~~~~~~-~~~~~~l~~~~~~~~v~~~~~~ps~~~~l~~~~ 3305 (5163)
T PRK12316 3228 MQQAYGLGVGDRVLQFTTFSFDVF-VEELFWPLMSGARVVLAGPED-WRDPALLVELINSEGVDVLHAYPSMLQAFLEEE 3305 (5163)
T ss_pred HHHhhCCCcccEEEeecCccHHHH-HHHHHHHHhCCCEEEEcChhh-cCCHHHHHHHHHHcCCcEEEcCHHHHHHHHhcc
Confidence 677889999999999999999986 789999999999999976543 348899999999999999999999999988653
Q ss_pred CcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEE
Q 004034 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVI 579 (778)
Q Consensus 500 ~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~I 579 (778)
. ...+++||.+++|||++++++.++|. .+ ++++|.||+||++++++............++|+|++|++++|
T Consensus 3306 ~----~~~~~~lr~~~~gGe~l~~~~~~~~~--~~---~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 3376 (5163)
T PRK12316 3306 D----AHRCTSLKRIVCGGEALPADLQQQVF--AG---LPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYI 3376 (5163)
T ss_pred c----cccCCcceEEEEccccCCHHHHHHHH--hC---CcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEE
Confidence 2 22567899999999999999999887 23 679999999999987664332222234678999999999999
Q ss_pred ECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC----CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCc
Q 004034 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655 (778)
Q Consensus 580 vd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 655 (778)
+|++++++|.|+.|||+|+| |++++||+|+++.+.+.|... ..+||+|||+|++++||.|+|+||+|+|||++|
T Consensus 3377 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~qvKi~G 3454 (5163)
T PRK12316 3377 LDGSLEPVPVGALGELYLGG--EGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRG 3454 (5163)
T ss_pred ECCCCCCCCCCCCceEEecc--cccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECCCCCEEEecccCCeEeeCc
Confidence 99999999999999999999 999999999999888877542 346999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCC
Q 004034 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735 (778)
Q Consensus 656 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 735 (778)
+||+|+|||++|.+||+|.+|+|++.. ++.++|||++...... ..++|+++|+++||.||+|..|+++++||+
T Consensus 3455 ~rIel~eIE~~l~~~~~V~~a~v~~~~----~~~l~a~vv~~~~~~~---~~~~l~~~l~~~Lp~ymvP~~~~~~~~lP~ 3527 (5163)
T PRK12316 3455 FRIELGEIEARLLEHPWVREAVVLAVD----GRQLVAYVVPEDEAGD---LREALKAHLKASLPEYMVPAHLLFLERMPL 3527 (5163)
T ss_pred EeeChHHHHHHHHhCCCcceEEEEEcc----CCeEEEEEEcCCcCcc---cHHHHHHHHHhhCCcccCcceeeeHhhcCC
Confidence 999999999999999999999998764 5689999998654322 257899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHh
Q 004034 736 TRSGKIMRRILRKIAS 751 (778)
Q Consensus 736 T~sGKi~R~~L~~~~~ 751 (778)
|+||||||++|++...
T Consensus 3528 t~~GKvdr~~L~~~~~ 3543 (5163)
T PRK12316 3528 TPNGKLDRKALPRPDA 3543 (5163)
T ss_pred CCCcchhHHhcCCCcc
Confidence 9999999999987543
|
|
| >COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-72 Score=651.26 Aligned_cols=511 Identities=31% Similarity=0.418 Sum_probs=420.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++...|.+++. .+|+++|+++.+.. .++||+||.++++++|+.|++.||++||+|+|+++|++++++++|||+++
T Consensus 12 ~~~~~l~~~a~-~~~~~~a~~~~~~~----~~~Ty~el~~~~~~~A~~L~~~~v~~gdrVail~~N~~e~~~~~~a~~~~ 86 (534)
T COG0318 12 TLASLLERAAR-RNPDRPALIFLGRG----GRLTYRELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRA 86 (534)
T ss_pred cHHHHHHHHHH-hCCCceEEEEcCCC----ceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 47788999988 89999999998432 25999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.+..+++.+++++++++++++++... ..+....... +....+........
T Consensus 87 Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-------- 145 (534)
T COG0318 87 GAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFA---------ALLEAVAEAL----PVVLVVLLVGDADD-------- 145 (534)
T ss_pred CEEEeecCcccCHHHHHHHHHhcCCeEEEEcccch---------hHHHHHhccC----CcceEEEecccccc--------
Confidence 99999999999999999999999999999987631 1222211111 11111111111000
Q ss_pred CCCcccchhhccCCCCC-CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC--CCCCcEEEEeCC
Q 004034 361 QDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD--YKPSDVYWCTAD 437 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~--~~~~d~~l~~~~ 437 (778)
. ....+.+.....+. ......++++|+++|+|||||||.||||++||+|++.+ .......++ +.+.|++++.+|
T Consensus 146 ~--~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~-~~~~~~~~~~~~~~~d~~l~~lP 222 (534)
T COG0318 146 R--LPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLAN-AAGIAAALGGGLTPDDVVLSWLP 222 (534)
T ss_pred c--ccccHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHH-HHHHHHHhcccCCCCceEEEecC
Confidence 0 00123333222111 11122267999999999999999999999999996655 344555666 899999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC-ceeEEEE
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK-SLRVLGS 516 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~-sLr~v~~ 516 (778)
++|++|+...++.+++.|+++++..+. .++++.++..+.++++|+++++|+++..|+...... ..++. +||.+++
T Consensus 223 l~H~~Gl~~~~~~~~~~G~~~v~~~~~--~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~--~~~~~~~lr~~~~ 298 (534)
T COG0318 223 LFHIFGLIVGLLAPLLGGGTLVLLSPE--PFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKD--DDDLSSSLRLVLS 298 (534)
T ss_pred hHHHHHHHHHHHHHHHcCCEEEeCCCC--CcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccC--ccccccceEEEEe
Confidence 999999887888889999999998632 358999999999999999999999999998886532 23344 4999999
Q ss_pred ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCc-eeCCCeeeEE
Q 004034 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGV-EIEGECSGYL 595 (778)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~-~~~~g~~GEL 595 (778)
||+++++++++.+.+.++. ..+++.||+||++.+++.........+.+++|+|+++++++|+|+++. ++| |..|||
T Consensus 299 gg~~~~~~~~~~~~~~~~~--~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei 375 (534)
T COG0318 299 GGAPLPPELLERFEERFGP--IAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEI 375 (534)
T ss_pred cCCcCCHHHHHHHHHHhCC--CceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEE
Confidence 9999999999999999983 479999999999976665433220135677899999999999997665 556 889999
Q ss_pred EEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
+|+| |+++.|||++|+.+.+.|.. +|||+|||+|++|+||+++|+||.+|+||.+|++|+|.|||.+|.+||.|.+
T Consensus 376 ~irg--p~v~~GY~~~pe~t~~~f~~--~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~ 451 (534)
T COG0318 376 WVRG--PNVMKGYWNRPEATAEAFDE--DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAE 451 (534)
T ss_pred EEEC--chhhhhhcCChHHHHHhhcc--CCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcce
Confidence 9999 89999999999999885533 5899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|+|++++|+..|+.++|+|+++++.. .....++|+++|+++++.|++|+.++++++||+|++||++|+.|++.+..
T Consensus 452 aavvgvpd~~~Ge~~~a~v~~~~~~~-~~~~~~~i~~~~~~~l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~ 527 (534)
T COG0318 452 AAVVGVPDERWGERVVAVVVLKPGGD-AELTAEELRAFLRKRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527 (534)
T ss_pred EEEEeCCCCccCceEEEEEEEcCCCC-CCCCHHHHHHHHHhhhhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence 99999999999999999999987632 01126899999999999999999999999999999999999999998875
|
|
| >PRK07788 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-72 Score=655.80 Aligned_cols=499 Identities=23% Similarity=0.311 Sum_probs=414.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. .+++||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 50 ~~~~~~~~~a~-~~pd~~Al~~~------~~~~Ty~el~~~~~~la~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~~ 122 (549)
T PRK07788 50 PFAGLVAHAAR-RAPDRAALIDE------RGTLTYAELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKV 122 (549)
T ss_pred hHHHHHHHHHH-HCCCceEEEEC------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence 57899999998 89999999976 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.+++++++++++|+++... ..+....... ..+..++...... ..
T Consensus 123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~-------~~ 182 (549)
T PRK07788 123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFT---------DLLSALPPDL----GRLRAWGGNPDDD-------EP 182 (549)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhH---------HHHHhhcccc----ccceEEEEecCcc-------cc
Confidence 99999999999999999999999999999986542 1121111111 1222222111110 00
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.......+++.+...... .....++++++|+|||||||+||||+++|++++.. .......+++.++|++++..|++|
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~d~~~~~~p~~~ 259 (549)
T PRK07788 183 SGSTDETLDDLIAGSSTA--PLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAP-LAGLLSRVPFRAGETTLLPAPMFH 259 (549)
T ss_pred CCcCcccHHHHhcCCCCC--CCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHH-HHHHHhhCCCCcCCeEEEccchHH
Confidence 001223344444332211 12234678899999999999999999999996544 334445678889999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..++ ..++.++..|+++++... +++..+++.++++++|++.++|++++.|++.........++++||.+++|||+
T Consensus 260 ~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~ 334 (549)
T PRK07788 260 ATGW-AHLTLAMALGSTVVLRRR----FDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSA 334 (549)
T ss_pred HHHH-HHHHHHHHhCCEEEECCC----CCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCC
Confidence 9885 456778999999998742 58999999999999999999999999998875432244568899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++++++.+.++ ++++|.||+||++..++... ......++++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 335 l~~~~~~~~~~~~~---~~l~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 409 (549)
T PRK07788 335 LSPELATRALEAFG---PVLYNLYGSTEVAFATIATP-EDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGN- 409 (549)
T ss_pred CCHHHHHHHHHHhC---ccceeccCcchhchhhccCh-hhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeC-
Confidence 99999999999887 57999999999986544322 22234567899999999999999999999999999999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
+.++.||+++++. . ..+|||+|||++++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+|+|++
T Consensus 410 -~~~~~gY~~~~~~--~----~~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~ 482 (549)
T PRK07788 410 -GFPFEGYTDGRDK--Q----IIDGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIG 482 (549)
T ss_pred -CCccccccCCCcc--c----ccCCceecCceEEEcCCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEEC
Confidence 8899999998864 1 13689999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
++++..++.++|||+++++...+ .++|+++++++|+.|++|..|+++++||+|++|||+|++|+++
T Consensus 483 ~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 548 (549)
T PRK07788 483 VDDEEFGQRLRAFVVKAPGAALD---EDAIKDYVRDNLARYKVPRDVVFLDELPRNPTGKVLKRELREM 548 (549)
T ss_pred CcCcccccEEEEEEEeCCCCCCC---HHHHHHHHHHhhhcCCCCcEEEEeCCCCCCCCcCEeHHHhhcc
Confidence 99988899999999998765444 5789999999999999999999999999999999999999864
|
|
| >PRK05691 peptide synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-73 Score=777.71 Aligned_cols=576 Identities=20% Similarity=0.273 Sum_probs=471.6
Q ss_pred CCCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccc
Q 004034 101 PSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSE 180 (778)
Q Consensus 101 ~~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 180 (778)
....++|||.+.+.... ++.+...+.|++++|+++++++++++|..+|++++++|++.++++.. +. ..+... +..+
T Consensus 1046 ~~~~~~~~l~l~~~~~~-~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~~~~~p~~~~~~l~l-~~-~~~~~~-l~~~ 1121 (4334)
T PRK05691 1046 HSREAKFDLQLHSEEDR-NGRLTLSFDYAAELFDAATIERLAEHFLALLEQVCEDPQRALGDVQL-LD-AAERAQ-LAQW 1121 (4334)
T ss_pred cCCcccceEEEEEEECC-CCcEEEEEEEchhhCCHHHHHHHHHHHHHHHHHHHhCcccchhhhcC-CC-HHHHHH-HHhc
Confidence 34457899988765222 34577899999999999999999999999999999999999998842 11 111001 1111
Q ss_pred cccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEE
Q 004034 181 NLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAV 260 (778)
Q Consensus 181 ~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V 260 (778)
+.... .....+++++|+++++ .+||++|+++. ++++||+||+++++++|++|+++|+++|++|
T Consensus 1122 ~~~~~----------~~~~~~l~~~~~~~a~-~~p~~~Al~~~------~~~lTY~eL~~~~~~lA~~L~~~gv~~g~~V 1184 (4334)
T PRK05691 1122 GQAPC----------APAQAWLPELLNEQAR-QTPERIALVWD------GGSLDYAELHAQANRLAHYLRDKGVGPDVCV 1184 (4334)
T ss_pred cCCCC----------CCccCCHHHHHHHHHH-hCCCCeEEEEC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 11000 0112368999999999 89999999986 5789999999999999999999999999999
Q ss_pred EEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCC
Q 004034 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGIS 340 (778)
Q Consensus 261 ai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (778)
+|++++++++++++|||+|+|++|+|++|.+|.+++.+++++++++++|+++..... +... ..
T Consensus 1185 ~i~~~~s~~~iv~~lailkaG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~-------------~~~~----~~ 1247 (4334)
T PRK05691 1185 AIAAERSPQLLVGLLAILKAGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLER-------------LPQA----EG 1247 (4334)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhh-------------cccc----cC
Confidence 999999999999999999999999999999999999999999999999998654210 0000 00
Q ss_pred ccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHH
Q 004034 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (778)
Q Consensus 341 ~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~ 420 (778)
. .++.++... ........+.....+++++||+|||||||+||||+++|+++ .+...+.
T Consensus 1248 ~-~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l-~~~~~~~ 1305 (4334)
T PRK05691 1248 V-SAIALDSLH--------------------LDSWPSQAPGLHLHGDNLAYVIYTSGSTGQPKGVGNTHAAL-AERLQWM 1305 (4334)
T ss_pred c-eEEeecccc--------------------ccccCCCCCCCCCCCCCeEEEEEcCCCCCCCceeEeecHHH-HHHHHHH
Confidence 1 112111110 00001111223456899999999999999999999999995 4555566
Q ss_pred HHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC
Q 004034 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (778)
Q Consensus 421 ~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~ 500 (778)
...+++.++|++++++|++|+.+ ++++|.+|++|+++++.+.... .++..+++.|++++||++.++|++++.|.+...
T Consensus 1306 ~~~~~~~~~d~~l~~~~~~fd~s-~~~~~~~L~~G~~l~i~~~~~~-~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~ 1383 (4334)
T PRK05691 1306 QATYALDDSDVLMQKAPISFDVS-VWECFWPLITGCRLVLAGPGEH-RDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL 1383 (4334)
T ss_pred HHhcCCCCCCEEEEeCCccHHHH-HHHHHHHHhCCCEEEEcCcccc-CCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc
Confidence 67789999999999999999987 6789999999999999865433 589999999999999999999999999987532
Q ss_pred cccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEE
Q 004034 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (778)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Iv 580 (778)
...+++||.+++|||++++++.++|.+.++ +++++|.||+||+++.++............++|+|++|++++|+
T Consensus 1384 ----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~ 1457 (4334)
T PRK05691 1384 ----AAACTSLRRLFSGGEALPAELRNRVLQRLP--QVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVL 1457 (4334)
T ss_pred ----cccCCcccEEEEeecCCCHHHHHHHHHhCC--CcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEE
Confidence 236789999999999999999999998876 47899999999998765532211122345789999999999999
Q ss_pred CCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC-----CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCc
Q 004034 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-----FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655 (778)
Q Consensus 581 d~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~-----~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 655 (778)
|++++++|.|+.|||+|+| |++++||+|+++.+.+.|... ..+||+|||+|++++||+++|+||+|+|||++|
T Consensus 1458 d~~~~~vp~G~~GEL~i~G--~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G 1535 (4334)
T PRK05691 1458 DAELNLLPPGVAGELCIGG--AGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRG 1535 (4334)
T ss_pred CCCCCCCCCCCceEEEecC--cccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECC
Confidence 9999999999999999999 899999999999888877542 234999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCC
Q 004034 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735 (778)
Q Consensus 656 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 735 (778)
+||+|+|||++|.+||+|.+|+|++..+. .++.+++|++...+.... .++|+++|+++||.||+|..|+++++||+
T Consensus 1536 ~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~---~~~l~~~l~~~Lp~y~vP~~~~~~~~lP~ 1611 (4334)
T PRK05691 1536 FRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAE---AERLKAALAAELPEYMVPAQLIRLDQMPL 1611 (4334)
T ss_pred EEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCC---HHHHHHHHHHhCccccCCcEEEEccccCC
Confidence 99999999999999999999999976654 458899999987654433 46899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHH
Q 004034 736 TRSGKIMRRILRKIA 750 (778)
Q Consensus 736 T~sGKi~R~~L~~~~ 750 (778)
|+||||||++|++..
T Consensus 1612 t~~GKidr~~L~~~~ 1626 (4334)
T PRK05691 1612 GPSGKLDRRALPEPV 1626 (4334)
T ss_pred CCCCCcChhhcCccc
Confidence 999999999998754
|
|
| >PRK07529 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-71 Score=654.18 Aligned_cols=524 Identities=25% Similarity=0.341 Sum_probs=425.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCC--CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
+++++|+++++ ++||++|+++.... ....+++||+||.++++++|+.|+++|+++||+|++++||++++++++|||+
T Consensus 26 t~~~~l~~~a~-~~p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~~Gi~~gd~V~i~~~n~~e~~~~~lA~~ 104 (632)
T PRK07529 26 STYELLSRAAA-RHPDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHSLGVGPGDVVAFLLPNLPETHFALWGGE 104 (632)
T ss_pred CHHHHHHHHHH-HCCCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 57899999998 89999999874221 1236799999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 279 ~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
++| +++|++|.++.+++.+++++++++++|+++.... ......+....... +.++.++.++....... ..
T Consensus 105 ~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~-~~ 174 (632)
T PRK07529 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPG----TDIWQKVAEVLAAL----PELRTVVEVDLARYLPG-PK 174 (632)
T ss_pred HhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCC----chHHHHHHHHHhcC----CcceeEEEecCcccccc-cc
Confidence 999 6799999999999999999999999999876421 11222233333322 45555655543211000 00
Q ss_pred cC--------CCCcccchhhccCCCCCC--CCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCC
Q 004034 359 KW--------QDGRDIWWQDVVPKYPTK--CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428 (778)
Q Consensus 359 ~~--------~~~~~~~~~~~l~~~~~~--~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~ 428 (778)
.+ .......|.+.+...+.. .......++++++|+|||||||.||||+++|++++ ...+.....+++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~-~~~~~~~~~~~~~~ 253 (632)
T PRK07529 175 RLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEV-ANAWLGALLLGLGP 253 (632)
T ss_pred cccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHH-HHHHHHHHhcCCCC
Confidence 00 011223444444433221 12233467999999999999999999999999954 44455556678889
Q ss_pred CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCC---hhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD---SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 429 ~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~---~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+|++++..|++|..+....++.+|..|+++++.+.... .+ ...+|++++++++|++.++|+++..|++... ..
T Consensus 254 ~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~-~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~ 329 (632)
T PRK07529 254 GDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGY-RGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPV---DG 329 (632)
T ss_pred CCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCcccc-CcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc---cC
Confidence 99999999999999887888999999999999764221 12 3678999999999999999999999988753 23
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEE--CCC
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV--DEK 583 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Iv--d~~ 583 (778)
.++++||.+++||+++++++.+++.+.++ +++++.||+||++.++...... ....++++|+|+++++++|+ |++
T Consensus 330 ~~~~slr~v~~gg~~l~~~l~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~-~~~~~~svG~~~p~~~v~i~~~d~~ 405 (632)
T PRK07529 330 HDISSLRYALCGAAPLPVEVFRRFEAATG---VRIVEGYGLTEATCVSSVNPPD-GERRIGSVGLRLPYQRVRVVILDDA 405 (632)
T ss_pred CCccceEEEEEcCCCCCHHHHHHHHHHhC---CcEeeeecccccCcccccCCcc-ccccCCCcccccCCceEEEEEcCCC
Confidence 47899999999999999999999999886 7899999999998765543322 23467899999999998884 777
Q ss_pred C---ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCH
Q 004034 584 G---VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGT 660 (778)
Q Consensus 584 g---~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~ 660 (778)
| ++++.|+.|||+|+| |+++.||++++. ....++ .+|||+|||+|++|+||+++|.||.||+||++|++|+|
T Consensus 406 g~~~~~~~~g~~Gel~v~g--p~v~~GY~~~~~-~~~~~~--~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~i~p 480 (632)
T PRK07529 406 GRYLRDCAVDEVGVLCIAG--PNVFSGYLEAAH-NKGLWL--EDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDP 480 (632)
T ss_pred CcccccCCCCCceEEEEEC--CCccccccCCcc-cccccc--CCCceEcCcEEEEcCCceEEEEecccCEEEeCCEEECH
Confidence 7 889999999999999 899999998754 334443 36899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcC-CCccccEEEECCCCCCCCCC
Q 004034 661 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG-AFAAPDKIHWAPGLPKTRSG 739 (778)
Q Consensus 661 ~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp-~~~~P~~i~~v~~lP~T~sG 739 (778)
.|||++|.+||+|.+|+|++++++..++.++|||+++++...+ .++|+++++++++ .+++|+.|+++++||+|++|
T Consensus 481 ~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~---~~~l~~~~~~~l~~~~~~P~~i~~v~~lP~t~~G 557 (632)
T PRK07529 481 AAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASAT---EAELLAFARDHIAERAAVPKHVRILDALPKTAVG 557 (632)
T ss_pred HHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCC---HHHHHHHHHHhcchhccCCcEEEEecCCCCCCCC
Confidence 9999999999999999999999998899999999998776544 4689999999997 47999999999999999999
Q ss_pred cccHHHHHHHHhc
Q 004034 740 KIMRRILRKIASR 752 (778)
Q Consensus 740 Ki~R~~L~~~~~~ 752 (778)
||+|++|++.+..
T Consensus 558 Ki~r~~Lr~~~~~ 570 (632)
T PRK07529 558 KIFKPALRRDAIR 570 (632)
T ss_pred cccHHHHHHHHHH
Confidence 9999999988754
|
|
| >PRK06060 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-71 Score=663.90 Aligned_cols=483 Identities=22% Similarity=0.313 Sum_probs=404.7
Q ss_pred HHHHHHHhhhcc--CCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 202 CYNCLDRNIEAG--LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 202 ~~~~l~~~~~~~--~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
+.++|.+++. . +||++|++.. +.+||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 6 ~~~~~~~~a~-~~~~pd~~a~~~~-------~~~Ty~eL~~~~~~lA~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~ 77 (705)
T PRK06060 6 LAGLLAEQAS-EAGWYDRPAFYAA-------DVVTHGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLA 77 (705)
T ss_pred HHHHHHHHHh-hccCCCceEEEec-------CceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 5677888776 4 7999999853 3799999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.+++++++++++|+++........ . .++.....
T Consensus 78 aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~--------------------~-~~~~~~~~--------- 127 (705)
T PRK06060 78 RGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQP--------------------S-RVAEAAEL--------- 127 (705)
T ss_pred hCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhcc--------------------c-ccchhhhh---------
Confidence 99999999999999999999999999999997643211000 0 00000000
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
+.+.....+ .......+++++||+|||||||+||||+++|++++.+........+++.++|++++..+++
T Consensus 128 --------~~~~~~~~~--~~~~~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~ 197 (705)
T PRK06060 128 --------MSEAARVAP--GGYEPMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKALRLTPEDTGLCSARMY 197 (705)
T ss_pred --------hhhccccCC--CCCCCCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhhCCCCcceeEEeccch
Confidence 000000000 0112345789999999999999999999999996555443334467888999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++...++.+|..|+++++.+.. .++..++++++++++|+++++|+++..|++... ..++++||.+++|||
T Consensus 198 ~~~~~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~----~~~~~slr~i~~gGe 270 (705)
T PRK06060 198 FAYGLGNSVWFPLATGGSAVINSAP---VTPEAAAILSARFGPSVLYGVPNFFARVIDSCS----PDSFRSLRCVVSAGE 270 (705)
T ss_pred hhcchhHHHHHHHhcCCEEEEeCCC---CCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc----cccccceeEEEEecC
Confidence 9888767788999999999997532 477888999999999999999999999887542 235789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
++++++++++.+.++ +++++|.||+||++.+....... ...++++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 271 ~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~--~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g 346 (705)
T PRK06060 271 ALELGLAERLMEFFG--GIPILDGIGSTEVGQTFVSNRVD--EWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRG 346 (705)
T ss_pred cCCHHHHHHHHHHcC--CCceEeeeeccccCceEEeccCC--CCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEcc
Confidence 999999999999886 47899999999998654432211 23567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
|++++||||+++.+.. .+|||+|||+|++++||+++|+||.||+||++|+||+|.|||++|.+||.|.+++|+
T Consensus 347 --~~v~~GY~~~~~~~~~-----~~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv 419 (705)
T PRK06060 347 --PAIAKGYWNRPDSPVA-----NEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVV 419 (705)
T ss_pred --chhhhhhhCCCccccc-----CCCcEECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 8999999999975422 368999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHH
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 750 (778)
+++++..++.+++||+...+...+.+..++|+++++++||.||+|..|+++++||+|+||||+|++|++.+
T Consensus 420 ~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~~L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~ 490 (705)
T PRK06060 420 AVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLNRLSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS 490 (705)
T ss_pred eecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHHhCCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence 99988888899999998766544444457899999999999999999999999999999999999999865
|
|
| >PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=636.17 Aligned_cols=511 Identities=25% Similarity=0.343 Sum_probs=423.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+||++|+++.+...+..+++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 25 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~Val~~~n~~e~~~~~la~~~~ 103 (547)
T PRK13295 25 TINDDLDACVA-SCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRI 103 (547)
T ss_pred CHHHHHHHHHH-HCCCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 47788999988 89999999986432233489999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++.... ......+.+....+ +.+..++.++....
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (547)
T PRK13295 104 GAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRG----FDHAAMARRLRPEL----PALRHVVVVGGDGA-------- 167 (547)
T ss_pred CcEEeccccccCHHHHHHHHHhcCceEEEEeccccC----cchHHHHHHHhhhC----CCcceEEEecCCCc--------
Confidence 999999999999999999999999999999876421 11122222222222 34445554432210
Q ss_pred CCCcccchhhccCC--------CCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEE
Q 004034 361 QDGRDIWWQDVVPK--------YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (778)
Q Consensus 361 ~~~~~~~~~~~l~~--------~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~ 432 (778)
..|.+.+.. ...........++++++|+|||||||.||||+++|++++.+.. .....+++.++|++
T Consensus 168 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~ 241 (547)
T PRK13295 168 -----DSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV-PYAERLGLGADDVI 241 (547)
T ss_pred -----cCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHH-HHHHHhCCCCCCeE
Confidence 011111110 0111112234678999999999999999999999999655443 35567888999999
Q ss_pred EEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCcee
Q 004034 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (778)
Q Consensus 433 l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr 512 (778)
++.+|++|..++++.++.+|..|+++++.+. .++..+++.++++++|++.++|++++.|..... ....++++||
T Consensus 242 l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~--~~~~~~~~l~ 315 (547)
T PRK13295 242 LMASPMAHQTGFMYGLMMPVMLGATAVLQDI----WDPARAAELIRTEGVTFTMASTPFLTDLTRAVK--ESGRPVSSLR 315 (547)
T ss_pred EEecCchhhhhHHHHHHHHHHcCCeEEeCCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--ccCCCcccce
Confidence 9999999999888889999999999998753 488999999999999999999999999987643 2235678999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCee
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~ 592 (778)
.+++|||++++++++++.+.++ +++++.||+||++.+.+............++|+|+++++++|+|+++++++.|+.
T Consensus 316 ~~~~~G~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~ 392 (547)
T PRK13295 316 TFLCAGAPIPGALVERARAALG---AKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQI 392 (547)
T ss_pred EEEEecCCCCHHHHHHHHHHhC---CCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCC
Confidence 9999999999999999999886 7899999999998765433221112234678999999999999999999999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
|||+|+| ++++.||+++++.+... .+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.+||+
T Consensus 393 Gel~v~g--~~~~~gY~~~~~~t~~~----~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~ 466 (547)
T PRK13295 393 GRLQVRG--CSNFGGYLKRPQLNGTD----ADGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPA 466 (547)
T ss_pred CeEEEEc--CcccccccCCccccccC----CCCCeecceEEEEcCCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCC
Confidence 9999999 89999999999877654 37899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|.+++|++++++..++.++++|++.++...+ .+++++++++ .+++|++|..|+++++||+|.+||++|++|+++++
T Consensus 467 v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~ 543 (547)
T PRK13295 467 IAQVAIVAYPDERLGERACAFVVPRPGQSLD---FEEMVEFLKAQKVAKQYIPERLVVRDALPRTPSGKIQKFRLREMLR 543 (547)
T ss_pred eeeEEEEeeecCCCCcEEEEEEEeCCCCCCC---HHHHHHHHHhccCccccCCcEEEEeccCCCCCCccccHHHHHHHHh
Confidence 9999999999988889999999988764433 4678888986 79999999999999999999999999999999886
Q ss_pred c
Q 004034 752 R 752 (778)
Q Consensus 752 ~ 752 (778)
+
T Consensus 544 ~ 544 (547)
T PRK13295 544 G 544 (547)
T ss_pred c
Confidence 4
|
|
| >PLN02860 o-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-71 Score=642.32 Aligned_cols=515 Identities=21% Similarity=0.214 Sum_probs=408.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. ++++||+||.++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~~~~~~~~~~~-~~p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~Gv~~gd~V~v~~~n~~~~~~~~la~~~~ 80 (563)
T PLN02860 8 HICQCLTRLAT-LRGNAVVTISG------NRRRTGHEFVDGVLSLAAGLLRLGLRNGDVVAIAALNSDLYLEWLLAVACA 80 (563)
T ss_pred HHHHHHHHHHH-hcCCceEEecC------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHhhc
Confidence 46788999998 89999999865 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEEccCCcccccccc
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
|++++|++|.++.+++.+++++++++++++++.... ...... ..+ +.+..++..+...... ...
T Consensus 81 Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~---------~~~~~~~~~~----~~~~~~i~~~~~~~~~--~~~ 145 (563)
T PLN02860 81 GGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSS---------WYEELQNDRL----PSLMWQVFLESPSSSV--FIF 145 (563)
T ss_pred cEEEEeCCcccCHHHHHHHHHhcCceEEEEecccch---------HHHHHhhccC----CceeEEEEecCccccc--ccc
Confidence 999999999999999999999999999999875321 011110 111 2233333333211000 000
Q ss_pred CCCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCc
Q 004034 360 WQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 438 (778)
+ ...+.+.+..... ..........++++++|+|||||||+||||+++|++++.+.. .....+++.++|+++..+|+
T Consensus 146 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl 222 (563)
T PLN02860 146 L--NSFLTTEMLKQRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSL-AKIAIVGYGEDDVYLHTAPL 222 (563)
T ss_pred h--hhccccchhccCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHH-HHHhhcCCCCCCEEEEecCc
Confidence 0 0000111111100 000111234678999999999999999999999999654433 33446788999999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|+.++ ..++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++..........+++||.+++||
T Consensus 223 ~h~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG 297 (563)
T PLN02860 223 CHIGGL-SSALAMLMVGACHVLLPK----FDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGG 297 (563)
T ss_pred hhhccH-HHHHHHHHcCceEEecCC----CCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCC
Confidence 999885 467889999999998753 489999999999999999999999999987643222234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCC-CC-------------------C-CCCCCCcCcCcCCceE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GA-------------------W-PQKPGSATFPFFGVQP 577 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~-~~-------------------~-~~~~~~~G~p~~g~~~ 577 (778)
+++++++++++.+.++ ++++++.||+||+++.++.... .. . .....++|+|++++++
T Consensus 298 ~~l~~~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v 375 (563)
T PLN02860 298 GSLSSRLLPDAKKLFP--NAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVEL 375 (563)
T ss_pred CcCCHHHHHHHHHhcC--CCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEE
Confidence 9999999999999885 4789999999999864432211 10 0 0112368999999999
Q ss_pred EEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCcee
Q 004034 578 VIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 657 (778)
Q Consensus 578 ~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 657 (778)
+|+|++ .|+.|||+|+| |+++.|||++++.+...+.. +|||+|||+|++|+||+++|+||.||+||++|++
T Consensus 376 ~i~~~~-----~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~ 446 (563)
T PLN02860 376 KIGLDE-----SSRVGRILTRG--PHVMLGYWGQNSETASVLSN--DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGEN 446 (563)
T ss_pred EEecCC-----CCceeEEEEec--CcccccccCCccccchhccC--CCeEEccceEEEcCCCCEEEeecccceeEECCEE
Confidence 999875 57899999999 89999999999888776543 6899999999999999999999999999999999
Q ss_pred eCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCC-----------CHHHHHHHHHHHHh-hcCCCcccc
Q 004034 658 IGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY-----------SEELRKSLVLAVRK-QIGAFAAPD 725 (778)
Q Consensus 658 I~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~-----------~~~l~~~l~~~l~~-~Lp~~~~P~ 725 (778)
|+|.|||++|.+||+|.+|+|++++++..++.++|+|+++++... .....++|++++++ .|++|++|+
T Consensus 447 v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~P~ 526 (563)
T PLN02860 447 VYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNLTLSSETLRHHCREKNLSRFKIPK 526 (563)
T ss_pred ccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEECCccccccccchhhcccccccHHHHHHHHhhCcccccccce
Confidence 999999999999999999999999998889999999998765210 01125688999987 599999999
Q ss_pred EEEEC-CCCCCCCCCcccHHHHHHHHhcccCc
Q 004034 726 KIHWA-PGLPKTRSGKIMRRILRKIASRQLDE 756 (778)
Q Consensus 726 ~i~~v-~~lP~T~sGKi~R~~L~~~~~~~~~~ 756 (778)
.|+++ ++||+|++|||+|++|++++.+....
T Consensus 527 ~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~~ 558 (563)
T PLN02860 527 LFVQWRKPFPLTTTGKIRRDEVRREVLSHLQS 558 (563)
T ss_pred EEEEEecCCCCCcccchhHHHHHHHHHHHHhc
Confidence 98765 67999999999999999998765443
|
|
| >PLN02736 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=651.38 Aligned_cols=525 Identities=18% Similarity=0.202 Sum_probs=406.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEE---cCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
+++++|+++++ ++||++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++|+++++|||
T Consensus 45 tl~~~l~~~a~-~~p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~ 123 (651)
T PLN02736 45 TLHDNFVYAVE-TFRDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQHGIPKGACVGLYFINRPEWLIVDHAC 123 (651)
T ss_pred CHHHHHHHHHH-hCCCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence 57899999998 89999999652 111123467999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|+++.++.+++.++|++++++++|+++... ..+.+....+ +.++.++.++.........
T Consensus 124 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~---------~~~~~~~~~~----~~l~~ii~~~~~~~~~~~~ 190 (651)
T PLN02736 124 SAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTL---------NTLLSCLSEI----PSVRLIVVVGGADEPLPSL 190 (651)
T ss_pred HHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHH---------HHHHHHhhcC----CCceEEEEECCCchhhhhh
Confidence 99999999999999999999999999999999975431 2222222222 4455565553211000000
Q ss_pred ccCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 358 TKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
..........|++.+.... ...+.....++|+++|+|||||||.||||++||++++.+ .......+++.++|++++++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~-~~~~~~~~~~~~~d~~l~~l 269 (651)
T PLN02736 191 PSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIAN-VAGSSLSTKFYPSDVHISYL 269 (651)
T ss_pred hccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHH-HHHHHhccCCCCCCEEEEeC
Confidence 0000011233444433211 111223457899999999999999999999999995544 44445567888999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc--------------
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-------------- 502 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~-------------- 502 (778)
|++|+++.. .++.+|..|+++++++. ++..+++.|+++++|+++.+|++++.|.+.....
T Consensus 270 Pl~h~~~~~-~~~~~l~~G~~i~~~~~-----~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~ 343 (651)
T PLN02736 270 PLAHIYERV-NQIVMLHYGVAVGFYQG-----DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNA 343 (651)
T ss_pred CHHHHHHHH-HHHHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999854 67789999999998763 6788999999999999999999998876531000
Q ss_pred --------------c----c-------cCCC-CceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceeccc
Q 004034 503 --------------V----T-------RYSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP 556 (778)
Q Consensus 503 --------------~----~-------~~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~ 556 (778)
. . +..+ ++||.+++||+++++++++++.+.+| +++++.||+||+++.++..
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~~ 420 (651)
T PLN02736 344 AYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICFG---GRVLEGYGMTETSCVISGM 420 (651)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHhC---CCeEEEechHHhchheecc
Confidence 0 0 0011 48999999999999999999998887 6899999999998765533
Q ss_pred CCCCCCCCCCCcCcCcCCceEEEECC-CCc---eeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcE
Q 004034 557 LPGAWPQKPGSATFPFFGVQPVIVDE-KGV---EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632 (778)
Q Consensus 557 ~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~---~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl 632 (778)
... ...++++|+|++|++++|+|. ++. ...++..|||+|+| |++++|||++++.+.+.|.. +|||+|||+
T Consensus 421 ~~~--~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrg--p~v~~GY~~~~~~t~~~~~~--dgw~~TGDl 494 (651)
T PLN02736 421 DEG--DNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRG--PIIFKGYYKDEVQTREVIDE--DGWLHTGDI 494 (651)
T ss_pred CCC--CCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEecC--CccccccccCHHHHHhhhcc--CCCeeccce
Confidence 322 245788999999999999984 322 12233469999999 89999999999998887643 789999999
Q ss_pred EEEecCCeEEEEeecCCEEEe-CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCC----------CC
Q 004034 633 CSRDKDGYHWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG----------VP 701 (778)
Q Consensus 633 ~~~~~dG~l~~~GR~dd~Iki-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~----------~~ 701 (778)
|++|+||+|+|+||.||+||+ +|++|+|.|||++|.+||.|.+|+|++. ..++.++|+|+++++ .+
T Consensus 495 g~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~---~~~~~~~A~vv~~~~~~~~~~~~~~~~ 571 (651)
T PLN02736 495 GLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQCFVYGD---SLNSSLVAVVVVDPEVLKAWAASEGIK 571 (651)
T ss_pred EEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEEEEEec---CCCceeEEEEEeCHHHHHHHHHHcCCC
Confidence 999999999999999999998 5999999999999999999999999983 356789999998642 11
Q ss_pred C--------CHHHHHHHHHHHH-----hhcCCCccccEEEECCCCC------CCCCCcccHHHHHHHHhcccCcCC
Q 004034 702 Y--------SEELRKSLVLAVR-----KQIGAFAAPDKIHWAPGLP------KTRSGKIMRRILRKIASRQLDELG 758 (778)
Q Consensus 702 ~--------~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~lP------~T~sGKi~R~~L~~~~~~~~~~~~ 758 (778)
. .+++.+.|.+.+. +.|+.|.+|++|+++++.| +|++|||+|++|++.+.+++++++
T Consensus 572 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~~~y 647 (651)
T PLN02736 572 YEDLKQLCNDPRVRAAVLADMDAVGREAQLRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAISDMY 647 (651)
T ss_pred ccCHHHHhcCHHHHHHHHHHHHHHHHhcCCCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHHHHH
Confidence 0 1122233333333 2599999999999999886 799999999999999988877665
|
|
| >PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-70 Score=634.86 Aligned_cols=506 Identities=18% Similarity=0.169 Sum_probs=396.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.+.|.+.++ ++|+++|+++.. .+++||+||.++++++|+.|.+ .+||+|+|+++|++++++++|||+++
T Consensus 20 ~~~~~~~~~~~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~lA~~L~~---~~gd~Val~~~n~~e~~~~~lA~~~~ 90 (539)
T PRK06334 20 TVLESFLKLCS-EMTTATVCWDEQ-----LGKLSYNQVRKAVIALATKVSK---YPDQHIGIMMPASAGAYIAYFATLLS 90 (539)
T ss_pred cHHHHHHHHHH-hCCCceEEEeCC-----CCcccHHHHHHHHHHHHHHHhh---ccCCeEEEEcCCchHHHHHHHHHHhc
Confidence 57788999998 899999987642 3689999999999999999987 38999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++|+++++++||++++.. ..+.+..... . .....++.++.... ...+
T Consensus 91 G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~--~-~~~~~~i~~~~~~~----~~~~ 154 (539)
T PRK06334 91 GKIPVMINWSQGLREVTACANLVGVTHVLTSKQLM---------QHLAQTHGED--A-EYPFSLIYMEEVRK----ELSF 154 (539)
T ss_pred CCeeEecCcccchHHHHHHHHHcCCCEEEehHHHH---------HHHhhhhhcc--c-cccccEEEEehhhh----hccH
Confidence 99999999999999999999999999999875431 1111111100 0 00112332222100 0000
Q ss_pred CCCcccchhhccCCC--CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCc
Q 004034 361 QDGRDIWWQDVVPKY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 438 (778)
............... ..........++++++|+|||||||+||||+++|++++.+ .......+++.++|++++.+|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~p~ 233 (539)
T PRK06334 155 WEKCRIGIYMSIPFEWLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLAN-QRACLKFFSPKEDDVMMSFLPP 233 (539)
T ss_pred HHhhhhhhhhcCCchhhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHH-HHHHHHhcCCCCCceEEEecch
Confidence 000000000000000 0001122356799999999999999999999999996544 4444556788899999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|.+++...++.+|..|+++++... .+++..+++.|+++++|++.++|++++.|++... ....++++||.+++||
T Consensus 234 ~h~~g~~~~~~~~l~~G~~vv~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gG 308 (539)
T PRK06334 234 FHAYGFNSCTLFPLLSGVPVVFAYN---PLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAK--KQESCLPSLRFVVIGG 308 (539)
T ss_pred HhhhhhHHHHHHHHHcCCeEEEecC---CCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhh--hcccccccccEEEECC
Confidence 9999877778899999999988643 2489999999999999999999999999987643 2234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCI 597 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v 597 (778)
+++++++++++.+.++ ++.+++.||+||++.+++..... .....+++|+|++|++++|+|+ ++++++.|+.|||+|
T Consensus 309 ~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v 385 (539)
T PRK06334 309 DAFKDSLYQEALKTFP--HIQLRQGYGTTECSPVITINTVN-SPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLT 385 (539)
T ss_pred ccCCHHHHHHHHHHCC--CCeEEecccccccCceEEeccCC-CCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEE
Confidence 9999999999999885 47899999999998765543322 1234567999999999999986 578999999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce--
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE-- 675 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e-- 675 (778)
+| |++++|||++++.+.... .+.+|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||+|.+
T Consensus 386 ~g--~~~~~GY~~~~~~~~~~~-~~~~~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~ 462 (539)
T PRK06334 386 RG--TSLFSGYLGEDFGQGFVE-LGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAAD 462 (539)
T ss_pred ec--CcccccccCCccccccee-eCCceeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCcccc
Confidence 99 899999999987532211 1236799999999999999999999999999999999999999999999999998
Q ss_pred ----EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHH
Q 004034 676 ----AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750 (778)
Q Consensus 676 ----a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 750 (778)
++|++++++ ...+++|++.. . + .++|+++++++ ++.|++|+.|+++++||+|++|||+|+.|+++.
T Consensus 463 ~~~~~~v~~~~~~--~~~~~~~~~~~--~--~---~~~~~~~l~~~~~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 533 (539)
T PRK06334 463 HAGPLVVCGLPGE--KVRLCLFTTFP--T--S---ISEVNDILKNSKTSSILKISYHHQVESIPMLGTGKPDYCSLNALA 533 (539)
T ss_pred ccCceEEEcCCCC--ceEEEEEEecc--C--C---hHHHHHHHHhcCCcccccchheeeecccccccCCcccHHHHHHHH
Confidence 777777643 24556666532 1 1 46788899886 789999999999999999999999999999986
Q ss_pred hc
Q 004034 751 SR 752 (778)
Q Consensus 751 ~~ 752 (778)
..
T Consensus 534 ~~ 535 (539)
T PRK06334 534 KS 535 (539)
T ss_pred HH
Confidence 53
|
|
| >PLN02574 4-coumarate--CoA ligase-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-69 Score=632.69 Aligned_cols=509 Identities=23% Similarity=0.344 Sum_probs=412.6
Q ss_pred ccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
++....+|++ + .+|+++|+++.. ...++||+||+++++++|+.|++ .|+++||+|+|+++|++++++++|||
T Consensus 40 ~~~~~~l~~~--~-~~~~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~~G~~~gd~V~i~~~n~~~~~~~~la~ 112 (560)
T PLN02574 40 LDAVSFIFSH--H-NHNGDTALIDSS----TGFSISYSELQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAV 112 (560)
T ss_pred CCHHHHHhcC--c-ccCCCCEEEECC----CCCcccHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHH
Confidence 3456677766 3 689999999642 13479999999999999999999 99999999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|++|.++.+++.++++++++++++++++.. .. +.. .... ++.++.....
T Consensus 113 ~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~----~~~-----~~~~-~~~~~~~~~~---- 169 (560)
T PLN02574 113 LSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENV---------EK----LSP-----LGVP-VIGVPENYDF---- 169 (560)
T ss_pred HHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHH---------HH----HHh-----cCCc-EEecCccccc----
Confidence 99999999999999999999999999999999976531 11 111 1111 2222211000
Q ss_pred ccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCC-CCCcEEE
Q 004034 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDY-KPSDVYW 433 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~-~~~d~~l 433 (778)
.........|.+.+.......+.....++++++|+|||||||.||||+++|++++........ ..+.. ...++++
T Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~l 248 (560)
T PLN02574 170 -DSKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYL 248 (560)
T ss_pred -ccCccCcccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCCCcEEE
Confidence 000001112333232222222233456789999999999999999999999996554332211 11222 3468899
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeE
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~ 513 (778)
..+|++|..++...++.++..|+++++.+. +++..+++.|+++++|++.++|++++.|.+.... ....++++||.
T Consensus 249 ~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~lr~ 323 (560)
T PLN02574 249 AALPMFHIYGLSLFVVGLLSLGSTIVVMRR----FDASDMVKVIDRFKVTHFPVVPPILMALTKKAKG-VCGEVLKSLKQ 323 (560)
T ss_pred EecchHHHHHHHHHHHHHHhcCCEEEEecC----CCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccc-cccCccccceE
Confidence 999999999877777788899999998854 4899999999999999999999999999887532 12356889999
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCee
Q 004034 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (778)
Q Consensus 514 v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~ 592 (778)
+++||+++++++++++.+.++ ++++++.||+||++.+.+..........++++|+|+++++++|+| ++|++++.|+.
T Consensus 324 ~~~gg~~l~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~ 401 (560)
T PLN02574 324 VSCGAAPLSGKFIQDFVQTLP--HVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNC 401 (560)
T ss_pred EEEecccCCHHHHHHHHHHCC--CCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCC
Confidence 999999999999999998885 478999999999986554322222224567899999999999999 68999999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
|||+|+| |+++.|||++++.+...+.. +|||+|||+|++|+||+++++||.||+||++|++|++.|||++|.+||+
T Consensus 402 Gei~v~g--~~~~~GY~~~~~~t~~~~~~--~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~ 477 (560)
T PLN02574 402 GELWIQG--PGVMKGYLNNPKATQSTIDK--DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPE 477 (560)
T ss_pred eEEEEEC--cchhhhhcCChhHhhhhccC--CCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCC
Confidence 9999999 89999999999988777643 7899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|.|++|++++++..++.+++||+.+++...+ .++|+++++++|++|+.|+.|+++++||+|++|||+|+.|++.+.+
T Consensus 478 V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~ 554 (560)
T PLN02574 478 IIDAAVTAVPDKECGEIPVAFVVRRQGSTLS---QEAVINYVAKQVAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN 554 (560)
T ss_pred cceEEEEccccCCCCcceEEEEEeCCCCCCC---HHHHHHHHHHhccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence 9999999999988888999999987655443 4689999999999999999999999999999999999999999864
|
|
| >PRK13382 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=627.38 Aligned_cols=492 Identities=24% Similarity=0.297 Sum_probs=407.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|.++++ ++||++|++.. .+++||.||.++++++|++|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 45 ~~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~A~~L~~~g~~~g~~V~i~~~n~~~~~~~~lA~~~~G 117 (537)
T PRK13382 45 PTSGFAIAAQ-RCPDRPGLIDE------LGTLTWRELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIG 117 (537)
T ss_pred HHHHHHHHHH-hCCCCeEEEeC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEecCcHHHHHHHHHHHHcC
Confidence 6788999998 89999999975 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.+++++++++++|+++... ..+....... +....++.+....
T Consensus 118 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~---------- 174 (537)
T PRK13382 118 ADILLLNTSFAGPALAEVVTREGVDTVIYDEEFS---------ATVDRALADC----PQATRIVAWTDED---------- 174 (537)
T ss_pred cEEEecCcccCHHHHHHHHHhcCCCEEEEchhhH---------HHHHHHHhhc----cccceEEEecCCc----------
Confidence 9999999999999999999999999999986532 2222222211 2222233222110
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
....+........... ....++++++++|||||||+||||+++|++++.+ .......+.+..+++++...|++|.
T Consensus 175 --~~~~~~~~~~~~~~~~--~~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~ 249 (537)
T PRK13382 175 --HDLTVEVLIAAHAGQR--PEPTGRKGRVILLTSGTTGTPKGARRSGPGGIGT-LKAILDRTPWRAEEPTVIVAPMFHA 249 (537)
T ss_pred --ccccHHHHhhccCcCC--CCCCCCCCeEEEECCCCCCCCCEEEeccchHHHH-HHHHHHhhCCCCCCeEEEecChHhh
Confidence 0112222222111111 1234688999999999999999999999885443 3444456778889999999999999
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.++ ..++.++..|+++++... ++++.+++.|+++++|++.++|++++.|++.........++++||.+++|||++
T Consensus 250 ~g~-~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l 324 (537)
T PRK13382 250 WGF-SQLVLAASLACTIVTRRR----FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRM 324 (537)
T ss_pred hHH-HHHHHHHhcCcEEEECCC----cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCC
Confidence 885 577889999999988642 589999999999999999999999999987653323344567899999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCC
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~ 601 (778)
++++++.|.+.++ .++++.||+||++.+.+..... ....++++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 325 ~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g-- 398 (537)
T PRK13382 325 RPDVVIAFMDQFG---DVIYNNYNATEAGMIATATPAD-LRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRN-- 398 (537)
T ss_pred CHHHHHHHHHHcC---CcEEecccccccCcceecChhH-hccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEc--
Confidence 9999999999987 5799999999998765533221 234678999999999999999999999999999999999
Q ss_pred CcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEE
Q 004034 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 681 (778)
|+++.||+ ++.+.. + .+|||+|||++++++||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|+++
T Consensus 399 ~~~~~gY~--~~~~~~-~---~~g~~~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~ 472 (537)
T PRK13382 399 DTQFDGYT--SGSTKD-F---HDGFMASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGV 472 (537)
T ss_pred CCcccCcc--ccchhh-c---cCCCEeeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEcc
Confidence 89999998 333332 2 26899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 682 ~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+++..++.++++|++.++.... .++|+++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 473 ~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~ 536 (537)
T PRK13382 473 DDEQYGQRLAAFVVLKPGASAT---PETLKQHVRDNLANYKVPRDIVVLDELPRGATGKILRRELQA 536 (537)
T ss_pred CccccCCEEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence 9887889999999987654333 578999999999999999999999999999999999999874
|
|
| >PLN02246 4-coumarate--CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-69 Score=622.06 Aligned_cols=505 Identities=24% Similarity=0.355 Sum_probs=418.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.+++.++++ ++||++|+++.. .++++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 24 ~~~~~l~~~~~-~~~~~~a~~~~~----~~~~~ty~el~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~la~~~~ 98 (537)
T PLN02246 24 PLHDYCFERLS-EFSDRPCLIDGA----TGRVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRR 98 (537)
T ss_pred cHHHHHHHHHH-hCCCCeEEEecC----CCceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 36677888887 799999998642 2478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++..++++++++++|+++... ..+.+.... ..+ .++.++...
T Consensus 99 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~-----~~~-~~i~~~~~~--------- 154 (537)
T PLN02246 99 GAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYV---------DKLKGLAED-----DGV-TVVTIDDPP--------- 154 (537)
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHHhhc-----CCc-eEEEeCCCC---------
Confidence 99999999999999999999999999999976542 112221110 122 233333211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCC
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (778)
.....+.+.........+.....++++++|+|||||||.||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 232 (537)
T PLN02246 155 --EGCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 232 (537)
T ss_pred --CCceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhccccccCCCCCcEEEEeec
Confidence 00111222222222222334456899999999999999999999999996655443221 2467889999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|..++...++.++..|+++++.+. .++..+++.|+++++|++.++|+++..|.+... ....+++++|.+++|
T Consensus 233 l~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~~~~~~lr~~~~g 306 (537)
T PLN02246 233 MFHIYSLNSVLLCGLRVGAAILIMPK----FEIGALLELIQRHKVTIAPFVPPIVLAIAKSPV--VEKYDLSSIRMVLSG 306 (537)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEeCC----CCHHHHHHHHHHhCceEEEcchHHHHHHhcCcc--ccccCccceeEEEEe
Confidence 99998876778889999999999864 478999999999999999999999999987643 223467899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCC---CCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeee
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP---GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSG 593 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~---~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~G 593 (778)
|+++++++.+++.+.++ ++.+++.||+||++.+++.... .....+++++|+|+++++++|+|+ ++++++.|+.|
T Consensus 307 g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 384 (537)
T PLN02246 307 AAPLGKELEDAFRAKLP--NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPG 384 (537)
T ss_pred cCcCCHHHHHHHHHHcC--CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCce
Confidence 99999999999999886 4789999999999865432211 112245678999999999999995 78999999999
Q ss_pred EEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCcc
Q 004034 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673 (778)
Q Consensus 594 EL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V 673 (778)
||+|+| +.++.||+++++.+...+.. +|||+|||++++++||+++++||.||+||++|+||+|.|||++|.+||+|
T Consensus 385 el~v~g--~~~~~GY~~~~~~~~~~~~~--~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v 460 (537)
T PLN02246 385 EICIRG--PQIMKGYLNDPEATANTIDK--DGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSI 460 (537)
T ss_pred EEEEEC--CchhccccCCchhhhhcccC--CCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCe
Confidence 999999 89999999999888776533 68999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 674 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
.+++|++++++..++.++++|+..++...+ .++|+++++++|++|++|..|+++++||+|++||++|++|++++.
T Consensus 461 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~~ 535 (537)
T PLN02246 461 ADAAVVPMKDEVAGEVPVAFVVRSNGSEIT---EDEIKQFVAKQVVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKLA 535 (537)
T ss_pred eEEEEEcccCccCCceeEEEEEeCCCCCCC---HHHHHHHHHhhCcCccccceEEEeccCCCCCcchhhHHHHHHHHh
Confidence 999999998888888999999987665433 578999999999999999999999999999999999999999875
|
|
| >PRK05852 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=618.86 Aligned_cols=518 Identities=20% Similarity=0.239 Sum_probs=417.0
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
+|++....+++.++|+++++ ++|+++|+++.+ ..+.+||+||+++++++|++|.++|+++||+|+|+++|+++++
T Consensus 8 ~~~~~~~~~~l~~~l~~~a~-~~p~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gv~~gd~V~i~~~n~~~~~ 82 (534)
T PRK05852 8 APMASDFGPRIADLVEVAAT-RLPEAPALVVTA----DRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFV 82 (534)
T ss_pred cchhhhhcccHHHHHHHHHH-hCCCCcEEEecC----CCCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHH
Confidence 56666667789999999998 899999998753 2468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (778)
+++|||+++|++++|++|.++.+++.++|++++++++|+++....... .... ......+.+....
T Consensus 83 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~ 147 (534)
T PRK05852 83 VALLAASRADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRA---------EPTT------RWWPLTVNVGGDS 147 (534)
T ss_pred HHHHHHHHcCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhc---------cccc------cccceeeeecccc
Confidence 999999999999999999999999999999999999998764321000 0000 0011111111110
Q ss_pred ccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcE
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~ 431 (778)
... ...+ ...+...... ..........++++++|+|||||||.||||+++|+++. .........+++.++|+
T Consensus 148 ~~~--~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~-~~~~~~~~~~~~~~~d~ 219 (534)
T PRK05852 148 GPS--GGTL----SVHLDAATEP-TPATSTPEGLRPDDAMIMFTGGTTGLPKMVPWTHANIA-SSVRAIITGYRLSPRDA 219 (534)
T ss_pred ccc--cccc----ccccccccCC-CccccccCCCCCCceEEEeCCCCCCCCcEEEecHHHHH-HHHHHHHHHhCCCCcce
Confidence 000 0000 0001111110 00001111225788999999999999999999999965 44444556778999999
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCce
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sL 511 (778)
+++.+|+.|..++...++.+|..|+++++... ..+++..+++.|+++++|+++++|++++.|.+.........+++++
T Consensus 220 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l 297 (534)
T PRK05852 220 TVAVMPLYHGHGLIAALLATLASGGAVLLPAR--GRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAAL 297 (534)
T ss_pred EEEecCcchhHHHHHHHHHHHhcCCeEEeCCC--cCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCe
Confidence 99999999999988888999999999888543 2347889999999999999999999999998865432223457899
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC------CCCCCCCCcCcCcCCceEEEECCCCc
Q 004034 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGV 585 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~------~~~~~~~~~G~p~~g~~~~Ivd~~g~ 585 (778)
|.++++|+++++++++++.+.++ +++++.||+||++..++..... ......+..|. .+|++++|+|++|+
T Consensus 298 r~i~~~G~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~-~~g~~~~i~d~~g~ 373 (534)
T PRK05852 298 RFIRSCSAPLTAETAQALQTEFA---APVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR-STGAQIRIVGSDGL 373 (534)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC---CChhhccCccccchhhhcCCccccccccCcccccccCCC-CCCCeEEEECCCCC
Confidence 99999999999999999999887 6899999999998754432111 00112334444 79999999999999
Q ss_pred eeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHH
Q 004034 586 EIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVES 665 (778)
Q Consensus 586 ~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~ 665 (778)
+++.|+.|||+|+| +.+++|||++++.+.+.|. +|||+|||++++|+||++++.||.||+||++|.+|+|.|||+
T Consensus 374 ~~~~g~~Gel~v~g--~~v~~gY~~~~~~t~~~~~---~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~ 448 (534)
T PRK05852 374 PLPAGAVGEVWLRG--TTVVRGYLGDPTITAANFT---DGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEG 448 (534)
T ss_pred CCCCCCceEEEEec--CcccchhcCCcccchhhhc---CCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHH
Confidence 99999999999999 8999999999998877653 689999999999999999999999999999999999999999
Q ss_pred HHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHH
Q 004034 666 ALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRI 745 (778)
Q Consensus 666 ~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~ 745 (778)
+|.+||+|.+|+|++++++..++.++++|+..+....+ .++|+++++++||.|++|..|+++++||+|++||++|++
T Consensus 449 ~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~---~~~i~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~ 525 (534)
T PRK05852 449 VLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPT---AEELVQFCRERLAAFEIPASFQEASGLPHTAKGSLDRRA 525 (534)
T ss_pred HHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEhhhcCCCCCccccHHH
Confidence 99999999999999999888889999999986654333 578999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 004034 746 LRKIAS 751 (778)
Q Consensus 746 L~~~~~ 751 (778)
|++.+.
T Consensus 526 L~~~~~ 531 (534)
T PRK05852 526 VAEQFG 531 (534)
T ss_pred HHHHhc
Confidence 999875
|
|
| >PLN02614 long-chain acyl-CoA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-69 Score=638.50 Aligned_cols=529 Identities=18% Similarity=0.242 Sum_probs=400.8
Q ss_pred ccHHHHHHHHhhhccCCCeEEEEEEcC---CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHH
Q 004034 199 TNICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275 (778)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~L 275 (778)
++++.++|+++++ ++||++|+.+... ..+..+.+||+||+++++++|++|+++|+++||+|+|+++|++|+++++|
T Consensus 44 ~~t~~~~l~~~a~-~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~Gd~Vai~~~n~~e~~~~~l 122 (666)
T PLN02614 44 MDSCWDVFRMSVE-KYPNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRSVGVKDEAKCGIYGANSPEWIISME 122 (666)
T ss_pred CCcHHHHHHHHHH-hCCCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3468899999998 8999999986421 11223568999999999999999999999999999999999999999999
Q ss_pred HHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccc
Q 004034 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (778)
Q Consensus 276 A~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (778)
||+++|+++||++|.++.+++.++|++++++++|++++. +......+......++.++.++.......
T Consensus 123 A~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~------------~~~~~~~~~~~~~~l~~vi~~~~~~~~~~ 190 (666)
T PLN02614 123 ACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKK------------ISELFKTCPNSTEYMKTVVSFGGVSREQK 190 (666)
T ss_pred HHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHH------------HHHHHHhcccccccceEEEEeCCCChHHh
Confidence 999999999999999999999999999999999997542 11111111100122455565543210000
Q ss_pred ccccCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh-----hCCCCC
Q 004034 356 ENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-----FDYKPS 429 (778)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~-----~~~~~~ 429 (778)
............|.+.+.... ...+.....++|+++|+|||||||.||||+++|+|++.+... .... .++.++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~-~~~~~~~~~~~~~~~ 269 (666)
T PLN02614 191 EEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAG-VIRLLKSANAALTVK 269 (666)
T ss_pred hhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHH-HHhhccccccCCCCC
Confidence 000000000123444332211 111122346899999999999999999999999996554332 2222 257789
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccc------
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV------ 503 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~------ 503 (778)
|++++++|++|+++.. ..+..+..|+++++.+ +++..+++.|+++++|+++++|++++.|........
T Consensus 270 d~~l~~lPl~H~~~~~-~~~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~ 343 (666)
T PLN02614 270 DVYLSYLPLAHIFDRV-IEECFIQHGAAIGFWR-----GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFL 343 (666)
T ss_pred cEEEEeccHHHHHHHH-HHHHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 9999999999998864 3456788999998874 378999999999999999999999998864210000
Q ss_pred -----------------------cc-------------CCC-CceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccccc
Q 004034 504 -----------------------TR-------------YSR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546 (778)
Q Consensus 504 -----------------------~~-------------~~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~ 546 (778)
.. ..+ ++||.+++||+++++++ +.|.+.++ ++++++.||+
T Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~--~~~i~~~YG~ 420 (666)
T PLN02614 344 KKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVA--CCHVLQGYGL 420 (666)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhc--CCCEEeeCch
Confidence 00 011 68999999999999875 55666665 3789999999
Q ss_pred ccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CC--CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCC
Q 004034 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (778)
Q Consensus 547 TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~--g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~ 623 (778)
||+++..+...+.. ..+++++|+|++|++++|+| ++ +++++.|+.|||+|+| |++++|||++++.+.+.|.
T Consensus 421 TE~~~~~~~~~~~~-~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrG--p~v~~GY~~~pe~T~~~f~--- 494 (666)
T PLN02614 421 TESCAGTFVSLPDE-LDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRG--KTLFSGYYKREDLTKEVLI--- 494 (666)
T ss_pred Hhhhhheeeecccc-CCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcC--CcccccccCCHHHhhhhhc---
Confidence 99986544333322 23568999999999999997 33 4789999999999999 8999999999999988762
Q ss_pred CCeEEcCcEEEEecCCeEEEEeecCCEEEe-CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC--
Q 004034 624 PGYYFTGDGCSRDKDGYHWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-- 700 (778)
Q Consensus 624 ~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~-- 700 (778)
+|||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++..+ ...++|+|++....
T Consensus 495 dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~~~V~g~~~---~~~l~alvv~~~~~~~ 571 (666)
T PLN02614 495 DGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNSF---ESFLVAIANPNQQILE 571 (666)
T ss_pred cCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCeeEEEEEecCC---cceEEEEEeCCHHHHH
Confidence 799999999999999999999999999998 599999999999999999999999998642 23699999876421
Q ss_pred --------C-------CCHHHHHHHHHHH-----HhhcCCCccccEEEECCC-C-----CCCCCCcccHHHHHHHHhccc
Q 004034 701 --------P-------YSEELRKSLVLAV-----RKQIGAFAAPDKIHWAPG-L-----PKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 701 --------~-------~~~~l~~~l~~~l-----~~~Lp~~~~P~~i~~v~~-l-----P~T~sGKi~R~~L~~~~~~~~ 754 (778)
. ..+++.+.|.+.+ ++.|+.|.+++.|+++++ | -+|+++|+.|+.+.+.+..++
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i 651 (666)
T PLN02614 572 RWAAENGVSGDYNALCQNEKAKEFILGELVKMAKEKKMKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVI 651 (666)
T ss_pred HHHHhcCCCcCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHH
Confidence 0 0122334444443 356999999999998874 4 389999999999999999888
Q ss_pred CcCCC
Q 004034 755 DELGD 759 (778)
Q Consensus 755 ~~~~~ 759 (778)
++++.
T Consensus 652 ~~ly~ 656 (666)
T PLN02614 652 DEMYK 656 (666)
T ss_pred HHHHH
Confidence 87763
|
|
| >PRK05677 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=621.73 Aligned_cols=514 Identities=21% Similarity=0.327 Sum_probs=413.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|+++++ .+|+++|++.. ++.+||+||+++++++|+.|.+ .|+++||+|+|+++|++++++++|||++
T Consensus 25 ~~~~~l~~~a~-~~p~~~al~~~------~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~~ 97 (562)
T PRK05677 25 NIQAVLKQSCQ-RFADKPAFSNL------GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMR 97 (562)
T ss_pred cHHHHHHHHHH-hCCCCeeEEEC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47788988888 89999999975 5789999999999999999997 6999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc--
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN-- 357 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-- 357 (778)
+|++++|++|.++.+++.+++++++++++|+++... ..+.+.... ..++.++..+.........
T Consensus 98 ~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK05677 98 AGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMA---------HLAEKVLPK-----TGVKHVIVTEVADMLPPLKRL 163 (562)
T ss_pred cCeEEeecCCCCCHHHHHHHHhccCceEEEEecchh---------hhHHHhhhc-----cCcceeEEecccccccchhhh
Confidence 999999999999999999999999999999876432 111111111 1222222211100000000
Q ss_pred ------------c-cCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh
Q 004034 358 ------------T-KWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (778)
Q Consensus 358 ------------~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (778)
. .........+.+.+.... ...+.....++++++|+|||||||+||||+++|++++.+.. .....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~-~~~~~ 242 (562)
T PRK05677 164 LINAVVKHVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANML-QCRAL 242 (562)
T ss_pred hcccchhhccccccccCCcccccHHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHH-HHHHH
Confidence 0 000001112222222111 11122335679999999999999999999999999655433 23323
Q ss_pred h--CCCC-CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC
Q 004034 424 F--DYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (778)
Q Consensus 424 ~--~~~~-~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~ 500 (778)
+ .+.. .+++++..|+.|..++.+.++.++..|++.++.+.. .++..+++.|+++++|+++.+|+++..|.....
T Consensus 243 ~~~~~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~ 319 (562)
T PRK05677 243 MGSNLNEGCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILISNP---RDLPAMVKELGKWKFSGFVGLNTLFVALCNNEA 319 (562)
T ss_pred hccCCCCCccEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEecCc---ccHHHHHHHHHHcCceEEecHHHHHHHHHhCcc
Confidence 3 2343 468899999999998777788888999988777542 478999999999999999999999999987543
Q ss_pred cccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEE
Q 004034 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (778)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Iv 580 (778)
....+++++|.+++||+++++++++++.+.++ +++++.||+||++.+....... ...++++|+|+++++++|+
T Consensus 320 --~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~vG~~~~~~~v~i~ 392 (562)
T PRK05677 320 --FRKLDFSALKLTLSGGMALQLATAERWKEVTG---CAICEGYGMTETSPVVSVNPSQ--AIQVGTIGIPVPSTLCKVI 392 (562)
T ss_pred --cccCChhhceEEEEcCccCCHHHHHHHHHHcC---CCeeccCCccccCcceeecCcc--CCCCCccCccCCCCEEEEE
Confidence 22345679999999999999999999999876 7899999999998765543222 2456789999999999999
Q ss_pred CCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCH
Q 004034 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGT 660 (778)
Q Consensus 581 d~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~ 660 (778)
|+++++++.|+.|||+|+| |.+++||+++++.+...|.. +|||+|||+|++|+||+++|.||.||+||++|++|+|
T Consensus 393 d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~--~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p 468 (562)
T PRK05677 393 DDDGNELPLGEVGELCVKG--PQVMKGYWQRPEATDEILDS--DGWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYP 468 (562)
T ss_pred CCCCCCCCCCCCeEEEEec--CccchhhcCCchhhhhccCC--CCcccccceEEECCCCcEEEEecCcCeEEeCCEEECH
Confidence 9999999999999999999 89999999999988877643 6899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCc
Q 004034 661 AEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 740 (778)
Q Consensus 661 ~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGK 740 (778)
.|||++|.+||+|.+++|++++++..++.++++|+++++...+ .++|+++++++|++|++|..|+++++||+|+|||
T Consensus 469 ~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK 545 (562)
T PRK05677 469 NELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLT---KEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGK 545 (562)
T ss_pred HHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCC---HHHHHHHHHHhhhhccCCcEEEEeccCCCCCccc
Confidence 9999999999999999999999988889999999987654433 5789999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcc
Q 004034 741 IMRRILRKIASRQ 753 (778)
Q Consensus 741 i~R~~L~~~~~~~ 753 (778)
++|++|+++..++
T Consensus 546 i~r~~L~~~~~~~ 558 (562)
T PRK05677 546 ILRRELRDEELKK 558 (562)
T ss_pred ccHHHHHHHHHHh
Confidence 9999999876544
|
|
| >PRK07656 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=612.50 Aligned_cols=506 Identities=24% Similarity=0.347 Sum_probs=425.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.+.|+++++ .+|+++|+++. ++++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++
T Consensus 6 ~i~~~l~~~~~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~g~~V~l~~~~~~~~~~~~la~~~~ 78 (513)
T PRK07656 6 TLPELLARAAR-RFGDKEAYVFG------DQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKA 78 (513)
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CCceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 57788999888 89999999986 688999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++..++++++++++++++... .........+ ...+.++....... ..
T Consensus 79 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~- 139 (513)
T PRK07656 79 GAVVVPLNTRYTADEAAYILARGDAKALFVLGLFL---------GVDYSATTRL----PALEHVVICETEED-----DP- 139 (513)
T ss_pred CeEEEecCcccCHHHHHHHHhhcCceEEEEchhhH---------HHHHHHHhcc----CCccEEEEEcCccc-----cc-
Confidence 99999999999999999999999999999987642 1112221222 33444444433221 00
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.......|.+.+.......+.....++++++|+|||||||.||+|.++|++++ .....+...+++.++|++++..|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (513)
T PRK07656 140 HTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLL-SNAADWAEYLGLTEGDRYLAANPFFH 218 (513)
T ss_pred CccccccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHH-HHHHHHHHhhCCCCCCeEEEccchHH
Confidence 01122334444433322223345678999999999999999999999999954 44455566788999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
++++...++.+|..|+++++... .++..+++.|+++++|++.++|++++.|.+.... ....++++|.+++||++
T Consensus 219 ~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~g~~ 292 (513)
T PRK07656 219 VFGYKAGVNAPLMRGATILPLPV----FDPDEVFRLIETERITVLPGPPTMYNSLLQHPDR--SAEDLSSLRLAVTGAAS 292 (513)
T ss_pred HHHHHHHHHHHHHcCceEEecCc----CCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCc--CCCCccceeeEEecCCC
Confidence 99988888999999999988643 4899999999999999999999999999987642 23467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC-CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++++++.+.++. .++++.||+||++++........ ....++++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 293 ~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~ 370 (513)
T PRK07656 293 MPVALLERFESELGV--DIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRG 370 (513)
T ss_pred CCHHHHHHHHHHcCC--CceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEc
Confidence 999999999998872 27999999999987665443222 112367899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
+.++.||+++++.+...+. .+|||+|||+|++++||.++++||.||+||++|.+|+|.|||++|.+||+|.+++|+
T Consensus 371 --~~~~~gy~~~~~~~~~~~~--~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 446 (513)
T PRK07656 371 --PNVMKGYYDDPEATAAAID--ADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVI 446 (513)
T ss_pred --chhhhhhcCCHHHHhhhhc--cCCceeccceEEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEE
Confidence 8999999999887766553 268999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+.+++..++.+++||+.+++...+ .++|++++++.||++++|..|+++++||+|++||++|+.|++
T Consensus 447 ~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~ 512 (513)
T PRK07656 447 GVPDERLGEVGKAYVVLKPGAELT---EEELIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALRE 512 (513)
T ss_pred ecCCcccCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence 999887888999999987644433 468999999999999999999999999999999999999975
|
|
| >PRK08314 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-68 Score=618.06 Aligned_cols=515 Identities=24% Similarity=0.355 Sum_probs=422.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|.++++ ++|+++|+++. ++++||+||.++++++|..|++. |+++||+|+|+++|++++++++|||++
T Consensus 11 tl~~~l~~~a~-~~~~~~a~~~~------~~~~Ty~~l~~~v~~~a~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 83 (546)
T PRK08314 11 SLFHNLEVSAR-RYPDKTAIVFY------GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILR 83 (546)
T ss_pred CHHHHHHHHHH-HcCCCcceeec------CceecHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence 47788888888 89999999987 57899999999999999999999 999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccc----
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR---- 355 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~---- 355 (778)
+|++++|++|.++.+++.+++++++++++|+++.... .+......+ .+..+++.........
T Consensus 84 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 149 (546)
T PRK08314 84 ANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAP---------KVAPAVGNL-----RLRHVIVAQYSDYLPAEPEI 149 (546)
T ss_pred cCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhh---------hHHHHhhcc-----CcceEEEecchhhccccccc
Confidence 9999999999999999999999999999999875421 111111111 1222322211000000
Q ss_pred c----------cccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC
Q 004034 356 E----------NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (778)
Q Consensus 356 ~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (778)
. ...........|.+.+.... ..+.....++++++|+|||||||.||||+++|++++.+.. .....++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~-~~~~~~~ 227 (546)
T PRK08314 150 AVPAWLRAEPPLQALAPGGVVAWKEALAAGL-APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAV-GSVLWSN 227 (546)
T ss_pred CcccccccccccccccccccccHHHHhcccC-CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHH-HHHHhhC
Confidence 0 00000112223444333211 1223345789999999999999999999999999765544 3455678
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+.++|++++.+|++|..|+.+.++.+|.+|+++++.+. +++..+++.++++++|++.++|++++.++.... ...
T Consensus 228 ~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~--~~~ 301 (546)
T PRK08314 228 STPESVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPR----WDREAAARLIERYRVTHWTNIPTMVVDFLASPG--LAE 301 (546)
T ss_pred CCCCceEEEEcCchHHHHHHHHHHHHHHcCCeEEecCC----CCHHHHHHHHHHhcCceecccHHHHHHHHhCCC--ccc
Confidence 89999999999999999988888999999999999864 488999999999999999999999999887643 234
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CC
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KG 584 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g 584 (778)
.+++++|.+++||+++++++++++.+.++ +++++.||+||++......... ....+++|+|++|++++|+|+ ++
T Consensus 302 ~~~~~l~~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~~~i~d~~~~ 376 (546)
T PRK08314 302 RDLSSLRYIGGGGAAMPEAVAERLKELTG---LDYVEGYGLTETMAQTHSNPPD--RPKLQCLGIPTFGVDARVIDPETL 376 (546)
T ss_pred cCchhhheeeeccccCCHHHHHHHHHHcC---CcEEecccccccccceecCCCc--CCCCCccCcccCCeEEEEEeCCCC
Confidence 56789999999999999999999999886 6899999999998765433222 134578999999999999995 78
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHH
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eI 663 (778)
++++.|+.|||+|+| ++++.||+++++.+...|.. +..+||+|||+|+++++|+++++||.||+||++|++|+|.||
T Consensus 377 ~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eI 454 (546)
T PRK08314 377 EELPPGEVGEIVVHG--PQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEV 454 (546)
T ss_pred cCCCCCCceEEEEEC--CchhccccCChhHhhhhhhhcCCCceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHH
Confidence 999999999999999 89999999999887776643 223599999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccH
Q 004034 664 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743 (778)
Q Consensus 664 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R 743 (778)
|++|.+||+|.+++|++.++...++.+++||+++++.... ...++|+++++++|++|++|..|+++++||+|.+||++|
T Consensus 455 E~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~-~~~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~r 533 (546)
T PRK08314 455 ENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK-TTEEEIIAWAREHMAAYKYPRIVEFVDSLPKSGSGKILW 533 (546)
T ss_pred HHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC-CCHHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeH
Confidence 9999999999999999999988889999999987654321 114789999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004034 744 RILRKIASR 752 (778)
Q Consensus 744 ~~L~~~~~~ 752 (778)
+.|++...+
T Consensus 534 ~~L~~~~~~ 542 (546)
T PRK08314 534 RQLQEQEKA 542 (546)
T ss_pred HHHHHHHhh
Confidence 999987653
|
|
| >TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-67 Score=613.33 Aligned_cols=506 Identities=24% Similarity=0.335 Sum_probs=414.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+|+++|+++.++..+..+.+||+||+++++++|.+|+++|+++||+|+++++|++++++++|||+++
T Consensus 23 ~~~~~~~~~~~-~~p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 101 (538)
T TIGR03208 23 TINDHFDAAVA-NCPDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARI 101 (538)
T ss_pred cHHHHHHHHHH-HCCCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 46788999998 89999999874332233678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++++++... .+.......+....+ +....++.++....
T Consensus 102 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 165 (538)
T TIGR03208 102 GAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFR----GFDHAAMARELQSKL----PALRQVVVIDGDGD-------- 165 (538)
T ss_pred CEEEeccCcccCHHHHHHHHHhcCCeEEEEccccc----cccHHHHHHHHhccC----CcceEEEEecCCCC--------
Confidence 99999999999999999999999999999987542 111112222221111 23344554432210
Q ss_pred CCCcccchhhccCCC-----CC---CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEE
Q 004034 361 QDGRDIWWQDVVPKY-----PT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~-----~~---~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~ 432 (778)
..|.+.+... +. ........++++++|+|||||||.||||+++|++++.. .......+++..+|++
T Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~-~~~~~~~~~~~~~d~~ 239 (538)
T TIGR03208 166 -----DSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSN-IHPYAERLELGGGDVI 239 (538)
T ss_pred -----cCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHH-HHHHHhhcCCCCCCeE
Confidence 0111111100 00 01112356799999999999999999999999995544 4444556788889999
Q ss_pred EEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCcee
Q 004034 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (778)
Q Consensus 433 l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr 512 (778)
++.+|++|..++.+.++.++..|+++++.+. +++..+++.++++++|++.++|+++..+...... ...+++++|
T Consensus 240 l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~--~~~~~~~l~ 313 (538)
T TIGR03208 240 LMASPMAHQTGFMYGLMMPLILNATAVLQDI----WNPARAAELIRETGVTFTMASTPFLTDLCRAVKE--SGAPVPSLF 313 (538)
T ss_pred EEeCCchhHHHHHHHHHHHHHcCCEEEecCc----cCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhc--cCCCCCcce
Confidence 9999999998888888999999999998743 4899999999999999999999999988765421 234678999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCee
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECS 592 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~ 592 (778)
.+++||+++++++++++.+.++ +++++.||+||++.+.+............++|+|++|++++|+|+++++++.|+.
T Consensus 314 ~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~ 390 (538)
T TIGR03208 314 TFLCAGAPIPGILVERAWELLG---ALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGET 390 (538)
T ss_pred EEEEcCCCCCHHHHHHHHHHcC---CeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCC
Confidence 9999999999999999998886 7899999999998765433222112234678999999999999999999999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
|||+|+| +.++.||+++++.+.. ..+|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+
T Consensus 391 Gel~v~g--~~~~~gy~~~~~~~~~----~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~ 464 (538)
T TIGR03208 391 GRLLVRG--CSNFGGYLKRPHLNST----DAEGWFDTGDLAFQDAEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPA 464 (538)
T ss_pred cEEEEec--CcccccccCCcccccc----cCCCceeccceEEECCCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcc
Confidence 9999999 8899999999876532 247899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
|.+++|++.++...++.+.++|++.++...+ .+++++++++ +++.|++|..|+++++||+|++||++|++|+
T Consensus 465 v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~ 537 (538)
T TIGR03208 465 VAQVAIVAYPDERLGERACAVVVPKPGCTLD---FAAMVAFLKAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537 (538)
T ss_pred eeeEEEEeccCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhcchhhccCCcEEEEeccCCCCCccccchHhhc
Confidence 9999999999887889999999997665443 4678888985 7999999999999999999999999999986
|
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. |
| >PRK06839 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-67 Score=605.24 Aligned_cols=490 Identities=22% Similarity=0.300 Sum_probs=412.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+.+.|+++++ .+||++|+++. ++.+||+||+++++++|+.|++ .|+++||+|+++++|++++++++|||+++
T Consensus 4 ~~~~~~~~a~-~~p~~~a~~~~------~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~ 76 (496)
T PRK06839 4 IAYWIEKRAY-LHPDRIAIITE------EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV 76 (496)
T ss_pred HHHHHHHHHH-HCCCCeEEEEC------CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 4567889998 89999999976 6899999999999999999985 79999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.+++++++++++++++... ..+.+.... .....++.+.+.
T Consensus 77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~---------- 132 (496)
T PRK06839 77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQ---------NMALSMQKV-----SYVQRVISITSL---------- 132 (496)
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHH---------HHHHHhhhc-----cCcceEEEecch----------
Confidence 99999999999999999999999999999976532 111111111 112223332211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.+...... .+.....++++++|+|||||||.||+|+++|.+++.+.. .....+++.++|++++.+|+.|
T Consensus 133 --------~~~~~~~~--~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~~ 201 (496)
T PRK06839 133 --------KEIEDRKI--DNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNAL-NNTFAIDLTMHDRSIVLLPLFH 201 (496)
T ss_pred --------HhhhccCC--CCCCCCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHH-HHHHHcCCCCCCeEEEeeCCcc
Confidence 11111111 112234568999999999999999999999999644333 3344568889999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..+....++.++..|+++++.+. .+++.+++.++++++|++.++|++++.|++... ....+++++|.+++||++
T Consensus 202 ~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~~ 275 (496)
T PRK06839 202 IGGIGLFAFPTLFAGGVIIVPRK----FEPTKALSMIEKHKVTVVMGVPTIHQALINCSK--FETTNLQSVRWFYNGGAP 275 (496)
T ss_pred hhhHHHHHHHHHhcCcEEEEccC----CCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcc--cccCCCcccceEEECCCC
Confidence 99877777889999999988653 489999999999999999999999999988754 233567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++++++.+. + +++.+.||+||++.+.+.........+.+++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 276 ~~~~~~~~~~~~-g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~- 350 (496)
T PRK06839 276 CPEELMREFIDR-G---FLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRG- 350 (496)
T ss_pred CCHHHHHHHHHh-C---CeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEEC-
Confidence 999999998875 4 78999999999987544332222234678899999999999999999999999999999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|.++.||+++++.+...+ .+|||+|||++++++||++++.||.||+||.+|.+|+|.|||++|.+||+|.+++|++
T Consensus 351 -~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~ 426 (496)
T PRK06839 351 -PNVMKEYWNRPDATEETI---QDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVG 426 (496)
T ss_pred -CCcchhhcCChHHHHHHH---cCCCeeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 899999999998776554 2689999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
++++..++.++++|+++++...+ .++|++++++.|+.+++|..|++++++|+|.+||++|++|+++..
T Consensus 427 ~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~ 494 (496)
T PRK06839 427 RQHVKWGEIPIAFIVKKSSSVLI---EKDVIEHCRLFLAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK 494 (496)
T ss_pred ccccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCcEEEEeccCCCCccccccHHHHHHHhh
Confidence 99988889999999998765443 478999999999999999999999999999999999999998875
|
|
| >PRK12583 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-67 Score=612.98 Aligned_cols=519 Identities=22% Similarity=0.290 Sum_probs=424.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++|+++|+++.+ .++.+||+||.++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~~~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~~a~~~~ 93 (558)
T PRK12583 19 TIGDAFDATVA-RFPDREALVVRH----QALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARI 93 (558)
T ss_pred cHHHHHHHHHH-HCCCCeEEEecC----CCcEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCChHHHHHHHHHHhh
Confidence 58899999998 899999999853 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhh---------cCCCccEEEEEccCC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK---------SGISVDVCLTYENQS 351 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~vi~~~~~~ 351 (778)
|++++|+++.++.+++.+++++++++++|+.+....... ...+.+....+.. ..+.+..++..+...
T Consensus 94 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (558)
T PRK12583 94 GAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDY----HAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAP 169 (558)
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccch----hHHHHHHhhhhccccccccccccCCcceEEEEecCCC
Confidence 999999999999999999999999999999876432111 1111111111100 001222233222111
Q ss_pred ccccccccCCCCcccchhhccCCCC------CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKYP------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (778)
. .....|.+...... .........++++++++|||||||.||||+++|++++. ........++
T Consensus 170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~-~~~~~~~~~~ 238 (558)
T PRK12583 170 P----------PGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN-NGYFVAESLG 238 (558)
T ss_pred C----------ccccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHH-HHHHHHHHhC
Confidence 0 00111222211110 11112234678999999999999999999999999644 4444556688
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+.++|++++..|++|..|..+.++.++..|+++++.... .++..+++.++++++|++..+|+++..++.... ...
T Consensus 239 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~v~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~--~~~ 313 (558)
T PRK12583 239 LTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEA---FDPLATLQAVEEERCTALYGVPTMFIAELDHPQ--RGN 313 (558)
T ss_pred CCCCCeEEEecCchhhhhHHHHHHHHHhcCceEEeecCC---CCHHHHHHHHHHcCCeEEeccHHHHHHHHcccc--ccC
Confidence 999999999999999999888899999999999876432 488999999999999999999999988886643 233
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC-CCCCCCCCcCcCcCCceEEEECCCC
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKG 584 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~g~~~~Ivd~~g 584 (778)
.++++||.+++||+++++++++++.+.++ ...+++.||+||++.+.+..... ....++.++|+|++++.++|+|+++
T Consensus 314 ~~~~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~ 391 (558)
T PRK12583 314 FDLSSLRTGIMAGAPCPIEVMRRVMDEMH--MAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDG 391 (558)
T ss_pred CCchhheEEEecCCCCCHHHHHHHHHHcC--CcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCC
Confidence 56889999999999999999999999887 35799999999999865543221 1223567899999999999999999
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHH
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE 664 (778)
++++.|+.|||+|+| +.++.||+++++.+...+.. +|||+|||++++++||++++.||.||+||++|.+|+|.|||
T Consensus 392 ~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE 467 (558)
T PRK12583 392 ATVPRGEIGELCTRG--YSVMKGYWNNPEATAESIDE--DGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIE 467 (558)
T ss_pred CCCCCCCeeEEEEEe--CccchhhcCChHHHHhhcCC--CCCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHH
Confidence 999999999999999 89999999999887766533 68999999999999999999999999999999999999999
Q ss_pred HHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHH
Q 004034 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744 (778)
Q Consensus 665 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~ 744 (778)
++|.+||+|.+++|++++++..++.++++|+..++...+ .++|+.+++++||.|++|..++++++||+|++||++|+
T Consensus 468 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~i~~~~~~~L~~~~~P~~i~~v~~lP~t~sGK~~r~ 544 (558)
T PRK12583 468 EFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAAS---EEELREFCKARIAHFKVPRYFRFVDEFPMTVTGKVQKF 544 (558)
T ss_pred HHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCC---HHHHHHHHHhhcccCcCCcEEEEeccCCCCCCCCccHH
Confidence 999999999999999999887788999999987654433 57899999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 004034 745 ILRKIASRQ 753 (778)
Q Consensus 745 ~L~~~~~~~ 753 (778)
.|+++...+
T Consensus 545 ~L~~~~~~~ 553 (558)
T PRK12583 545 RMREISIEE 553 (558)
T ss_pred HHHHHHHhh
Confidence 999997654
|
|
| >PRK05857 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=616.17 Aligned_cols=507 Identities=21% Similarity=0.282 Sum_probs=402.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.+.|.++++ .+|+++|+++.+. ++.+||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 15 ~~~~~l~~~a~-~~p~~~a~~~~~~----~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~e~~~~~lA~~~~ 89 (540)
T PRK05857 15 TVLDRVFEQAR-QQPEAIALRRCDG----TSALRYRELVAEVGGLAADLRAQSVSRGSRVLVISDNGPETYLSVLACAKL 89 (540)
T ss_pred chHHHHHHHHh-hCCCcEEEeecCC----CceeeHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 46778888888 8999999986532 468999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.++++.++++++|+++....... .+.+.. ..+. .+.++.... .
T Consensus 90 G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~------~~~~~~-------~~~~-~~~~~~~~~----~--- 148 (540)
T PRK05857 90 GAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASS------AVPEAL-------HSIP-VIAVDIAAV----T--- 148 (540)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccc------cccccc-------cccc-eeEeecccc----c---
Confidence 999999999999999999999999999999876432110 000000 1111 222221100 0
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCC
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (778)
.. +.+...... ........++++++|+|||||||.||||+++|++++.+...... ..++...+++.++.+|
T Consensus 149 ----~~-~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (540)
T PRK05857 149 ----RE-SEHSLDAAS-LAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWVTWVVGETTYSPLP 222 (540)
T ss_pred ----cc-ccccccccc-cccccCCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccccccccCceeeecCC
Confidence 00 000011000 01122356789999999999999999999999996543221111 1245667899999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|..++. .++.+|+.|+++++.+ .++..++++|+++++|+++++|++++.|.+... ....+++++|.+++|
T Consensus 223 ~~h~~~l~-~~~~~l~~G~~~v~~~-----~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~g 294 (540)
T PRK05857 223 ATHIGGLW-WILTCLMHGGLCVTGG-----ENTTSLLEILTTNAVATTCLVPTLLSKLVSELK--SANATVPSLRLVGYG 294 (540)
T ss_pred ccccchHH-HHHHHhhcceeEEecC-----CChhHHHHHHHhcCcceEEeChHHHHHHHhccc--cCCCcCccceEEEEc
Confidence 99998854 5788899999987632 377899999999999999999999999987653 223578899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCce------eC
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVE------IE 588 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~------~~ 588 (778)
|++++....+++ +.++ +++++.||+||++...+...... ...+++++|+|++|++++|+|++++. ++
T Consensus 295 G~~~~~~~~~~~-~~~g---~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~ 370 (540)
T PRK05857 295 GSRAIAADVRFI-EATG---VRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGP 370 (540)
T ss_pred CccCCchhHHHH-HHhC---CeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCC
Confidence 999998887644 4555 78999999999986543222111 12356889999999999999987663 24
Q ss_pred CCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 589 ~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
.|+.|||+|+| |++++|||++++.+.+.|. +|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.
T Consensus 371 ~~~~Gel~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~ 445 (540)
T PRK05857 371 SASFGTLWIKS--PANMLGYWNNPERTAEVLI---DGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAE 445 (540)
T ss_pred CCCcceEEEeC--cchhhhhhCCccchhhhcC---CCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHH
Confidence 57899999999 8999999999998887764 689999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCC--CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY--SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~--~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L 746 (778)
.||+|.+|+|+++++...++.++++|+..+.... .+++.+.+.+.+++.+++|++|..|+++++||+|++||++|++|
T Consensus 446 ~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~v~~~~~iP~t~~GKi~r~~l 525 (540)
T PRK05857 446 GVSGVREAACYEIPDEEFGALVGLAVVASAELDESAARALKHTIAARFRRESEPMARPSTIVIVTDIPRTQSGKVMRASL 525 (540)
T ss_pred hCCCeeEEEEEecCccccccceEEEEEeCCCCChhhHHHHHHHHHHHHHhhhccccCCeEEEEhhcCCCCCCcceeHHHH
Confidence 9999999999999988777888888887654321 13456677778889999999999999999999999999999999
Q ss_pred HHHHhcccCc
Q 004034 747 RKIASRQLDE 756 (778)
Q Consensus 747 ~~~~~~~~~~ 756 (778)
++++++...+
T Consensus 526 ~~~~~~~~~~ 535 (540)
T PRK05857 526 AAAATADKAR 535 (540)
T ss_pred HHhhhhccce
Confidence 9999876544
|
|
| >PRK09274 peptide synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-67 Score=615.60 Aligned_cols=512 Identities=21% Similarity=0.233 Sum_probs=398.5
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCC----CcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDP----GVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~----~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
+.++|+++++ ++||++|+++.+... ...+++||+||.++++++|++|.++|+++||+|+++++|++++++++|||
T Consensus 8 ~~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~~g~~~gd~V~~~~~n~~~~~~~~la~ 86 (552)
T PRK09274 8 IARHLPRAAQ-ERPDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFAL 86 (552)
T ss_pred HHHHHHHHHH-hCCCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcHHHHHHHHHH
Confidence 4567888887 899999999863210 01238999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|++|.++.+++.+++++++++++|+++... ..+.+... .......++.++....
T Consensus 87 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~-----------~~~~~~~~--~~~~~~~~i~~~~~~~----- 148 (552)
T PRK09274 87 FKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAH-----------LARRLFGW--GKPSVRRLVTVGGRLL----- 148 (552)
T ss_pred HHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHH-----------HHHHHhcc--Cccchhheeccccccc-----
Confidence 99999999999999999999999999999999865210 00001000 0011222222221100
Q ss_pred ccCCCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 358 TKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
. ....+.+..... ....+.....++++++|+|||||||.||||+++|++++ .........+++.++|+.++..
T Consensus 149 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 222 (552)
T PRK09274 149 ----W-GGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFE-AQIEALREDYGIEPGEIDLPTF 222 (552)
T ss_pred ----c-CCccHHHhcccCccccCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHH-HHHHHHHHHhCCCCCceeeecc
Confidence 0 011122222111 11122234567899999999999999999999999954 4444455678899999999988
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCC---CCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGA---PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~---~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~ 513 (778)
|+.|.. .+..|+++++.+.. +..+++..+++.|+++++|+++++|++++.|.+... ....++++||.
T Consensus 223 pl~~~~--------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~lr~ 292 (552)
T PRK09274 223 PLFALF--------GPALGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGE--ANGIKLPSLRR 292 (552)
T ss_pred CHHHhh--------hhhhCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhh--hcCCCCchhhE
Confidence 876533 24568888876422 223588999999999999999999999999987643 23457889999
Q ss_pred EEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC------C--CCCCCCCcCcCcCCceEEEECC---
Q 004034 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------A--WPQKPGSATFPFFGVQPVIVDE--- 582 (778)
Q Consensus 514 v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~------~--~~~~~~~~G~p~~g~~~~Ivd~--- 582 (778)
+++|||++++++++++.+.++. ++++++.||+||++.+++..... . ......++|+|+++++++|+|+
T Consensus 293 ~~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~ 371 (552)
T PRK09274 293 VISAGAPVPIAVIERFRAMLPP-DAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDA 371 (552)
T ss_pred EEecCCcCCHHHHHHHHHHcCC-CceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEecccc
Confidence 9999999999999999999863 36899999999998755432211 0 0112347899999999999984
Q ss_pred ------CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEecCCeEEEEeecCCEEEeC
Q 004034 583 ------KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVS 654 (778)
Q Consensus 583 ------~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~ 654 (778)
++++++.|+.|||+|+| |.+++|||++++.+...++.+.+| ||+|||+|++|+||+|+|+||.||+||++
T Consensus 372 ~~~~~~~~~~~~~g~~Gel~v~g--~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~ 449 (552)
T PRK09274 372 PIPEWDDALRLATGEIGEIVVAG--PMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETA 449 (552)
T ss_pred ccccccccccCCCCCeeEEEEec--CcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEEC
Confidence 46789999999999999 899999999999888776554456 99999999999999999999999999999
Q ss_pred ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCC
Q 004034 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733 (778)
Q Consensus 655 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~l 733 (778)
|++|+|.|||++|.+||+|.+|+|++++++ .++.++++|++.++...+ +++.++++++++.. +.++.|..|+++++|
T Consensus 450 G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~~~~~~~~l 527 (552)
T PRK09274 450 GGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPVLCVELEPGVACSKSALYQELRALAAAH-PHTAGIERFLIHPSF 527 (552)
T ss_pred CEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEEEEEEccCccccchHHHhhhhHHHHHhc-CCCcceeEEeccCCC
Confidence 999999999999999999999999999876 467889999988765433 23455666655443 556788999999999
Q ss_pred CCC--CCCcccHHHHHHHHhcc
Q 004034 734 PKT--RSGKIMRRILRKIASRQ 753 (778)
Q Consensus 734 P~T--~sGKi~R~~L~~~~~~~ 753 (778)
|+| +||||+|++|++++.++
T Consensus 528 P~t~~~~GKi~r~~L~~~~~~~ 549 (552)
T PRK09274 528 PVDIRHNAKIFREKLAVWAAKQ 549 (552)
T ss_pred CccccccccccHHHHHHHHHHh
Confidence 999 79999999999988654
|
|
| >PRK05605 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-67 Score=611.73 Aligned_cols=514 Identities=23% Similarity=0.302 Sum_probs=418.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++|+++|+++. ++.+||+||+++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 33 ~l~~~~~~~~~-~~p~~~a~~~~------~~~~Ty~ql~~~~~~~A~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 105 (573)
T PRK05605 33 TLVDLYDNAVA-RFGDRPALDFF------GATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRL 105 (573)
T ss_pred CHHHHHHHHHH-HCCCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 37788999998 89999999986 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccc----
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE---- 356 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~---- 356 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+.+.... .....++.++........
T Consensus 106 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~ 171 (573)
T PRK05605 106 GAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVA---------PTVERLRRT-----TPLETIVSVNMIAAMPLLQRLA 171 (573)
T ss_pred CcEEeecCcCCCHHHHHHHHhccCCcEEEechhhH---------HHHHhhhhc-----cccceeEeeecccccccccccc
Confidence 99999999999999999999999999999976532 111111111 122223322211000000
Q ss_pred ------c-------ccCCCCcccchhhccCCCCCC----CCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH
Q 004034 357 ------N-------TKWQDGRDIWWQDVVPKYPTK----CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT 419 (778)
Q Consensus 357 ------~-------~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~ 419 (778)
. ..........|.+........ .......++++++|+|||||||.||+|+++|++++.+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~ 251 (573)
T PRK05605 172 LRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQG 251 (573)
T ss_pred cccccccccccccccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHH
Confidence 0 000011123344433221111 12234567899999999999999999999999966554432
Q ss_pred HHHhhCCC-CCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 420 FKYAFDYK-PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 420 ~~~~~~~~-~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
.....++. .++++++..|+.|..|+...++.++..|+++++.+. ++++.+++.|+++++|++.++|++++.|.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~ 327 (573)
T PRK05605 252 KAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPA----PDIDLILDAMKKHPPTWLPGVPPLYEKIAEA 327 (573)
T ss_pred HhhccccCCCCcEEEEecChHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCEEEEchHHHHHHHHhC
Confidence 22222333 368999999999998877777888999999999864 4889999999999999999999999999986
Q ss_pred CCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEE
Q 004034 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (778)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 578 (778)
.. ....++++||.+++||+++++++.+++.+.++ +++++.||+||+++++...... ....++++|+|++++.++
T Consensus 328 ~~--~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~---~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~ 401 (573)
T PRK05605 328 AE--ERGVDLSGVRNAFSGAMALPVSTVELWEKLTG---GLLVEGYGLTETSPIIVGNPMS-DDRRPGYVGVPFPDTEVR 401 (573)
T ss_pred cc--ccCCCchhccEEEECCCcCCHHHHHHHHHHhC---CCeecccccchhchhhhcCCcc-cCCcCCccccCCCCCEEE
Confidence 54 23456789999999999999999999988876 6799999999998765543221 123567899999999999
Q ss_pred EECCC--CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCce
Q 004034 579 IVDEK--GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGH 656 (778)
Q Consensus 579 Ivd~~--g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ 656 (778)
|+|++ +++++.|+.|||+|+| +.++.||+++++.+...|. +|||+|||+++++++|+++++||.||+||++|+
T Consensus 402 i~d~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~ 476 (573)
T PRK05605 402 IVDPEDPDETMPDGEEGELLVRG--PQVFKGYWNRPEETAKSFL---DGWFRTGDVVVMEEDGFIRIVDRIKELIITGGF 476 (573)
T ss_pred EEcCCCCCccCCCCCeeEEEEec--CchhhhhcCChhHhhhccc---CCCcccCCEEEEcCCCcEEEEeccccceeeCCE
Confidence 99975 5889999999999999 8999999999988877654 479999999999999999999999999999999
Q ss_pred eeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCC
Q 004034 657 RIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736 (778)
Q Consensus 657 rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T 736 (778)
+|+|.|||++|.+|+.|.+++|++++++..++.++++|++.++...+ .++|+++++++|+.+++|..|+++++||+|
T Consensus 477 ~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t 553 (573)
T PRK05605 477 NVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALD---PEGLRAYCREHLTRYKVPRRFYHVDELPRD 553 (573)
T ss_pred EECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCC---HHHHHHHHHHhCccccCCcEEEEeccCCCC
Confidence 99999999999999999999999999888889999999988765443 478999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcc
Q 004034 737 RSGKIMRRILRKIASRQ 753 (778)
Q Consensus 737 ~sGKi~R~~L~~~~~~~ 753 (778)
.+||++|++|++++.++
T Consensus 554 ~~GKi~r~~L~~~~~~~ 570 (573)
T PRK05605 554 QLGKVRRREVREELLEK 570 (573)
T ss_pred CcccccHHHHHHHHHHH
Confidence 99999999999988653
|
|
| >PLN02861 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-68 Score=628.44 Aligned_cols=528 Identities=18% Similarity=0.243 Sum_probs=399.1
Q ss_pred cHHHHHHHHhhhccCCCeEEEEEE---cCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHH
Q 004034 200 NICYNCLDRNIEAGLGDKVAIYWE---ANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (778)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA 276 (778)
.+++++|+++++ ++|+++|+.+. +...+..+.+||+||.++++++|++|+++|+++||+|+|+++|++||++++||
T Consensus 43 ~t~~~~l~~~~~-~~p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA 121 (660)
T PLN02861 43 DSPWQFFSDAVK-KYPNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRSRGVNPGDRCGIYGSNCPEWIIAMEA 121 (660)
T ss_pred CCHHHHHHHHHH-hCCCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 367899999998 89999999763 11113356899999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccc
Q 004034 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (778)
Q Consensus 277 ~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (778)
|+++|++++|++|.++.+++.++|++++++++|+++... ..+......+ ...++.++.++........
T Consensus 122 ~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~---------~~~~~~~~~~---~~~l~~ii~~~~~~~~~~~ 189 (660)
T PLN02861 122 CNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKI---------SSILSCLPKC---SSNLKTIVSFGDVSSEQKE 189 (660)
T ss_pred HHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHH---------HHHHHhhhhC---CCCCEEEEEECCCChhhhh
Confidence 999999999999999999999999999999999865421 1111111111 1235566655432100000
Q ss_pred cccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC-----CCCCcE
Q 004034 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSDV 431 (778)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-----~~~~d~ 431 (778)
...........|.+.+.......+.....++|+++|+|||||||.||||+++|++++.... .....++ +.++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~-~~~~~~~~~~~~~~~~d~ 268 (660)
T PLN02861 190 EAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVL-STDHLLKVTDRVATEEDS 268 (660)
T ss_pred hhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHH-HHHhccccccccCCCCCE
Confidence 0000000112344333221111122345689999999999999999999999999655433 2333332 467899
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC-----------
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN----------- 500 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~----------- 500 (778)
+++++|++|+++.... +.+|+.|++++++. +++..+++.|+++++|+++++|++++.|.+...
T Consensus 269 ~l~~lPl~H~~~~~~~-~~~l~~G~~v~~~~-----~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~ 342 (660)
T PLN02861 269 YFSYLPLAHVYDQVIE-TYCISKGASIGFWQ-----GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRK 342 (660)
T ss_pred EEEECcHHHHHHHHHH-HHHHHhCCEEEEeC-----CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHH
Confidence 9999999999986654 45799999998873 378999999999999999999999998864100
Q ss_pred ------------------------cccccC-------CC-CceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccccccc
Q 004034 501 ------------------------EYVTRY-------SR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548 (778)
Q Consensus 501 ------------------------~~~~~~-------~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 548 (778)
...... .+ ++||.+++||+++++++.+ |.+.++ ...+++.||+||
T Consensus 343 ~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~~-~~~~~~--~~~l~~~YG~TE 419 (660)
T PLN02861 343 KLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVEE-FLRVTS--CSVLSQGYGLTE 419 (660)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHH-HHHHHc--CCCeeEecchhh
Confidence 000000 12 5899999999999999855 556665 246999999999
Q ss_pred ccceecccCCCCCCCCCCCcCcCcCCceEEEEC--CCC-ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC
Q 004034 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (778)
Q Consensus 549 ~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd--~~g-~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G 625 (778)
+++.++...... ..+++++|+|+++++++|+| +.| ..++.+..|||+|+| |+++.|||++++.+.+.|. +|
T Consensus 420 ~~~~~~~~~~~~-~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrG--p~v~~GY~~~pe~T~~~f~---dG 493 (660)
T PLN02861 420 SCGGCFTSIANV-FSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRG--NTLFSGYHKRQDLTEEVLI---DG 493 (660)
T ss_pred hhhceeeccccc-CCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcC--CcccccccCCHHHHHhhhh---cc
Confidence 986554333221 23568999999999999997 334 334456689999999 8999999999999988873 79
Q ss_pred eEEcCcEEEEecCCeEEEEeecCCEEEe-CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCC-----
Q 004034 626 YYFTGDGCSRDKDGYHWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG----- 699 (778)
Q Consensus 626 ~yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~----- 699 (778)
||+|||+|++|+||+|+|+||+||+||+ +|++|+|.|||++|.+||.|.+|+|++.+ .++.++|+|++...
T Consensus 494 w~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V~~a~V~G~~---~~~~~~A~vv~~~~~l~~~ 570 (660)
T PLN02861 494 WFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLIASIWVYGNS---FESFLVAVVVPDRQALEDW 570 (660)
T ss_pred CcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCeeEEEEEecC---CcceeEEEEEcCHHHHHHH
Confidence 9999999999999999999999999998 59999999999999999999999999875 34679999998632
Q ss_pred -----CCCC-H------HHHHHHHHHHHh-----hcCCCccccEEEECC-CC-----CCCCCCcccHHHHHHHHhcccCc
Q 004034 700 -----VPYS-E------ELRKSLVLAVRK-----QIGAFAAPDKIHWAP-GL-----PKTRSGKIMRRILRKIASRQLDE 756 (778)
Q Consensus 700 -----~~~~-~------~l~~~l~~~l~~-----~Lp~~~~P~~i~~v~-~l-----P~T~sGKi~R~~L~~~~~~~~~~ 756 (778)
...+ . .....+.+.+.+ .++.|..++.|.+++ .| .+|+++|+.|+.+.+.+..++++
T Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~ 650 (660)
T PLN02861 571 AANNNKTGDFKSLCKNLKARKYILDELNSTGKKLQLRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQ 650 (660)
T ss_pred HHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHH
Confidence 0001 1 122334444443 489999999999866 56 89999999999999999998887
Q ss_pred CCC
Q 004034 757 LGD 759 (778)
Q Consensus 757 ~~~ 759 (778)
+++
T Consensus 651 lY~ 653 (660)
T PLN02861 651 LYS 653 (660)
T ss_pred HHH
Confidence 764
|
|
| >PRK06145 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-67 Score=602.15 Aligned_cols=493 Identities=22% Similarity=0.310 Sum_probs=414.5
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++|+++|+++. ++.+||.||.+++.++|.+|.+.|+++|++|+|+++|++++++++|||+++|
T Consensus 4 ~~~~~~~~~~-~~~~~~a~~~~------~~~~ty~el~~~v~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G 76 (497)
T PRK06145 4 LSASIAFHAR-RTPDRAALVYR------DQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAASYLG 76 (497)
T ss_pred HHHHHHHHHH-HCCCceEEEEC------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhcC
Confidence 5688999998 89999999986 6789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.+++++++++++++++..... . .. . ...+.++....
T Consensus 77 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-------------~-~~-----~-~~~~~~~~~~~--------- 127 (497)
T PRK06145 77 AVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAI-------------V-AL-----E-TPKIVIDAAAQ--------- 127 (497)
T ss_pred cEEEecccccCHHHHHHHHHhcCCcEEEEccchhhh-------------h-hc-----c-cceEEecCccc---------
Confidence 999999999999999999999999999997654210 0 00 0 11122221100
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
..+.................++++++|+|||||||.||||+++|++++.. .......+++..+++++...|++|.
T Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~ 202 (497)
T PRK06145 128 ----ADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWK-SIDHVIALGLTASERLLVVGPLYHV 202 (497)
T ss_pred ----chhHHHhccCCCCCCCCCCCccceEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhhCCCCCcEEEEecCchhH
Confidence 00000000000111122356789999999999999999999999996543 3334456788999999999999998
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.++....+.++..|+++++.+. +++..+++.++++++|++.++|++++.|+..... ...+++++|.+++|||++
T Consensus 203 ~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~--~~~~~~~l~~~~~gG~~~ 276 (497)
T PRK06145 203 GAFDLPGIAVLWVGGTLRIHRE----FDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDR--DRFDLDSLAWCIGGGEKT 276 (497)
T ss_pred hHHHHHHHHHHhccCEEEECCc----CCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCc--cccccccceEEEecCCCC
Confidence 8876666788999999988753 4899999999999999999999999999876542 345678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCC
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~ 601 (778)
++++++++.+.++ +.++++.||+||++...+....+.....++++|+|+++++++|+|+++++++.|+.|||+++|
T Consensus 277 ~~~~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g-- 352 (497)
T PRK06145 277 PESRIRDFTRVFT--RARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRG-- 352 (497)
T ss_pred CHHHHHHHHHHcC--CCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEEC--
Confidence 9999999999886 478999999999987544332222233567899999999999999999999999999999999
Q ss_pred CcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEE
Q 004034 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 681 (778)
+.++.||+++++.+...|. ++||+|||++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|++.
T Consensus 353 ~~~~~Gy~~~~~~~~~~~~---~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~ 429 (497)
T PRK06145 353 PKVTKGYWKDPEKTAEAFY---GDWFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGV 429 (497)
T ss_pred cchhhhhcCChHHHHHHHh---CCCeeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEec
Confidence 8999999999998888764 6899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 682 ~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
+++..++.+++++++.+....+ .++|+++++++|++|++|..|+++++||+|++||++|++|++++.
T Consensus 430 ~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~ 496 (497)
T PRK06145 430 HDDRWGERITAVVVLNPGATLT---LEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN 496 (497)
T ss_pred CCCccCceEEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence 9888888999999987654433 578999999999999999999999999999999999999999764
|
|
| >COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=544.86 Aligned_cols=507 Identities=23% Similarity=0.331 Sum_probs=432.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.+.|.++++ ++||++|++.. ++.+||+||++++.++|..|+++|+++||+|.+-+||..|+++++||.+|+
T Consensus 29 ~l~d~L~~~A~-~~pdriAv~d~------~~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN~~ef~~~~FALlrl 101 (542)
T COG1021 29 TLTDILTDHAA-RYPDRIAVIDG------ERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNVAEFYITFFALLRL 101 (542)
T ss_pred cHHHHHHHHHh-hcCCceEEecC------cccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCchHHHHHHHHHHHHc
Confidence 36688999998 99999999987 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|+++|.--|+....+|.+..+.+.++.+|.++.. ..+.......+.+... +.++++++.++....
T Consensus 102 Gv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~----~gFd~~~~ar~~~a~~----~tlr~v~v~ge~~~~------- 166 (542)
T COG1021 102 GVAPVLALPSHRASELGAFASQIEAALLIVARQH----SGFDYRPFARELVAKH----PTLRHVIVAGEAEHP------- 166 (542)
T ss_pred CcchhhccchhhHHHHHHHHHhhcchheeechhh----cccCcHHHHHHHHhhC----CcceEEEEccCCCCc-------
Confidence 9999999999999999999999999999988654 3445556656555554 677888776544210
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+...-.......+..+.+++++||..-+-||||.||-|..+|..|..+... ....++++..+++++.+|..|
T Consensus 167 ----~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~a-SaEiC~~~~~tvyL~~LP~AH 241 (542)
T COG1021 167 ----SVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRA-SAEICGFDQQTVYLCALPAAH 241 (542)
T ss_pred ----chhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeee-hhhhhCcCccceEEEeccccc
Confidence 001111111222233445677889999999999999999999999997655444 455789999999999999998
Q ss_pred hhhh-hHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGH-SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~-~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.+-+ .-.+++.++.|+++|+.+. ++|+..+.+|++|+||+..++|.+...+++..+. ...+++|||.+=+||.
T Consensus 242 NfplssPG~LGv~~agG~VVla~~----psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~--~~~~LsSLrllQVGGa 315 (542)
T COG1021 242 NFPLSSPGALGVFLAGGTVVLAPD----PSPELCFPLIERHGVTVTALVPPLASLWLQAAEW--ERADLSSLRLLQVGGA 315 (542)
T ss_pred CCCCCCcchhheeeeccEEEECCC----CCHHHHHHHHHHhccceEEeccHHHHHHHHhhhc--ccCCchheeEEeecCc
Confidence 7643 2367889999999999865 5899999999999999999999999999988763 5668999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
.+++++.+++...+| |.+.+.+||.|--. ..+...+.......+-|+|+ |.-+++|+|++|+++++|++|+|..+
T Consensus 316 rl~~~~Arrv~~~lg---C~LQQVFGMAEGLv-nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltR 391 (542)
T COG1021 316 RLSATLARRVPAVLG---CQLQQVFGMAEGLV-NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTR 391 (542)
T ss_pred ccCHHHHhhchhhhC---chHHHHhhhhhhhh-cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeec
Confidence 999999999999998 89999999999643 22222222223345679998 67899999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |-..+|||+-++-....|.. +|+|+|||++++|+||+|.+.||.+|||+.+|++|-.+|||+.|+.||.|.+|++
T Consensus 392 G--PYTirGYyrap~HNa~aF~a--~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAl 467 (542)
T COG1021 392 G--PYTIRGYYRAPEHNARAFDA--DGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAAL 467 (542)
T ss_pred C--CeeeeeeccCchhhhhccCc--CCceecCceeEecCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhh
Confidence 9 88999999999888888765 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|+.+|+.-||+.+|||+.++... + ..+++.+|+++ +..|++|++|.+++.||+|+-||||+++|++.+..
T Consensus 468 VampDelLGEksCAfiv~~~~~~-~---~~qlr~~L~~~GlAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~ 538 (542)
T COG1021 468 VAMPDELLGEKSCAFIVVKEPPL-R---AAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS 538 (542)
T ss_pred hcCchhhcCcceeEEEEecCCCC-C---HHHHHHHHHHcchhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence 99999999999999999987643 2 56888888775 89999999999999999999999999999988753
|
|
| >PRK07769 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-67 Score=620.95 Aligned_cols=511 Identities=20% Similarity=0.186 Sum_probs=399.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcC---CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
.+.++|+++++ .+||++|+++.+. ..+..+.+||+||+++++++|++|++. +++||+|+|+++|++++++++|||
T Consensus 22 ~l~~~l~~~a~-~~~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~-~~~gd~V~i~~~n~~e~~~~~lA~ 99 (631)
T PRK07769 22 NLVRHVERWAK-VRGDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQV-TKPGDRVAILAPQNLDYLIAFFGA 99 (631)
T ss_pred CHHHHHHHHHH-hCCCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHHh-cCCCCEEEEEcCCChHHHHHHHHH
Confidence 46788999988 8999999998531 112347899999999999999999987 899999999999999999999999
Q ss_pred HHhCCEEEeC-CCCCC--HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 278 ARIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 278 l~~Gav~vpl-~p~~~--~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
+++|++++|+ ++..+ .+++.+++++++++++|+++... ..+........ ......++.++...
T Consensus 100 ~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 165 (631)
T PRK07769 100 LYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSA---------EGVRKFFRARP--AKERPRVIAVDAVP--- 165 (631)
T ss_pred HHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHH---------HHHHHHHhhcc--ccccceEEEccccc---
Confidence 9999999999 56655 68899999999999999976531 11222111110 00112233222110
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEE
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~ 434 (778)
+.... ........++++++|+|||||||+||||+++|++++.+ .......+++.++|++++
T Consensus 166 ---------------~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~l~ 226 (631)
T PRK07769 166 ---------------DEVGA---TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTN-VLQVIDALEGQEGDRGVS 226 (631)
T ss_pred ---------------ccccc---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHH-HHHHHHHcCCCCcceEEE
Confidence 00000 01112346799999999999999999999999996544 344455678889999999
Q ss_pred eCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCc---cEEEecHHHHHHHHhc---CCcccccCCC
Q 004034 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV---TIFYTAPTLVRSLMRD---GNEYVTRYSR 508 (778)
Q Consensus 435 ~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~v---T~l~~~Ps~l~~L~~~---~~~~~~~~~l 508 (778)
++|++|+.|+. .++.+++.|++++++.+.....++..+++.++++++ +++..+|+++..+... ........++
T Consensus 227 ~~Pl~h~~gl~-~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l 305 (631)
T PRK07769 227 WLPFFHDMGLI-TVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDL 305 (631)
T ss_pred eCCCcCchhhH-HHHHHHhhCCeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcch
Confidence 99999999864 456677889999988542222378899999999986 7899999988776643 1111113578
Q ss_pred CceeEEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCC------------------------
Q 004034 509 KSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW------------------------ 561 (778)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~------------------------ 561 (778)
++||.+++||++++++++++|.+.++. ....+++.||+||++.+++.......
T Consensus 306 ~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 385 (631)
T PRK07769 306 SNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAP 385 (631)
T ss_pred hheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCC
Confidence 999999999999999999999998742 22469999999999865543221110
Q ss_pred -CCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC---------------CCC
Q 004034 562 -PQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------------PFP 624 (778)
Q Consensus 562 -~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~---------------~~~ 624 (778)
.....++|+|+++++++|+|+ ++++++.|+.|||+|+| |+++.|||++++.+.+.|.. ..+
T Consensus 386 ~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~g--p~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~ 463 (631)
T PRK07769 386 NAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHG--NNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDA 463 (631)
T ss_pred CceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecC--CCccccccCChhHHHHHHhhhcccccccccccCcccCC
Confidence 012357999999999999994 78999999999999999 89999999999988877752 124
Q ss_pred CeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhc-CCccce--EEEEEEec------------------
Q 004034 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS-HPQCAE--AAVVGVEH------------------ 683 (778)
Q Consensus 625 G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~-~p~V~e--a~Vv~~~~------------------ 683 (778)
|||+|||+|+++ ||+|+|+||.||+||++|++|+|.|||++|.+ ||.|.+ ++|+++++
T Consensus 464 gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~ 542 (631)
T PRK07769 464 LWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFD 542 (631)
T ss_pred CeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHHHHHHHHhccccccCCcEEEEEecccccccccccccccccccc
Confidence 799999999995 99999999999999999999999999999996 899998 99999998
Q ss_pred -CCCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHHhhcCC-Cc-cccEEEECC--CCCCCCCCcccHHHHHHHHhcc
Q 004034 684 -EVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGA-FA-APDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 684 -~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~-~~-~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+..++.++++|+++++. ..+ .++|+++++++|+. |. .|+.+++++ +||+|++|||+|++|++.+...
T Consensus 543 ~~~~ge~~~a~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 615 (631)
T PRK07769 543 PEDTSEQLVIVAERAPGAHKLD---PQPIADDIRAAIAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYLDG 615 (631)
T ss_pred cCCCCccEEEEEEecCcccccc---HHHHHHHHHHHHHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHHcC
Confidence 55788999999988753 222 57889999999885 56 488888887 6999999999999999987644
|
|
| >PRK07638 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=599.09 Aligned_cols=480 Identities=21% Similarity=0.267 Sum_probs=401.9
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.+.|+++++ ++||++|+++. ++++||.||.++++++|++|.+.|. +||+|+|+++|++++++++|||+++|
T Consensus 3 ~~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~~-~~~~v~i~~~~~~~~~~~~la~~~~G 74 (487)
T PRK07638 3 ITKEYKKHAS-LQPNKIAIKEN------DRVLTYKDWFESVCKVANWLNEKES-KNKTIAILLENRIEFLQLFAGAAMAG 74 (487)
T ss_pred hHHHHHHHHH-hCCCCeEEecC------CcEeeHHHHHHHHHHHHHHHHHhCC-CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5577888888 89999999976 5799999999999999999999984 89999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.++++.++++++|+++...... .. .. ..++.++..
T Consensus 75 ~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-------------~~-----~~-~~~~~~~~~----------- 124 (487)
T PRK07638 75 WTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDL-------------PD-----EE-GRVIEIDEW----------- 124 (487)
T ss_pred eEEEecCccCCHHHHHHHHHhCCCCEEEEecccccch-------------hh-----cc-ceEEEehhh-----------
Confidence 9999999999999999999999999999987542110 00 00 112222111
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
.+.+..............+++++|+|||||||.||||+++|++++.+. ......+++.++|+++...++.|.
T Consensus 125 -------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~-~~~~~~~~~~~~d~~~~~~~l~~~ 196 (487)
T PRK07638 125 -------KRMIEKYLPTYAPIENVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSF-DCNVHDFHMKREDSVLIAGTLVHS 196 (487)
T ss_pred -------hhhhhhccccccccccCCCCcEEEEeCCCCCCCCcEEEEecHHHHHHH-HHHHHhcCcCCCCEEEEeecchHH
Confidence 001111111111112235778999999999999999999999965544 445567888999999999999998
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.+ ++.++.+|..|+++++.+. +++..+++.++++++|++.++|++++.|.+... ...+.+.++++|+++
T Consensus 197 ~~-l~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------~~~~~~~~~~~G~~l 265 (487)
T PRK07638 197 LF-LYGAISTLYVGQTVHLMRK----FIPNQVLDKLETENISVMYTVPTMLESLYKENR------VIENKMKIISSGAKW 265 (487)
T ss_pred HH-HHHHHHHHccCcEEEEcCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC------cCCceeEEEEcCCCC
Confidence 76 5678889999999998754 489999999999999999999999999988632 234566778899999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCC
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~ 601 (778)
++++.+++.+.++ ++.+++.||+||++.+...... ....++.++|+|+++++++|+|++|++++.|+.|||+|+|
T Consensus 266 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~-- 340 (487)
T PRK07638 266 EAEAKEKIKNIFP--YAKLYEFYGASELSFVTALVDE-ESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKS-- 340 (487)
T ss_pred CHHHHHHHHHHcC--CCeEEEEecCCccCceEEeccc-ccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEec--
Confidence 9999999999986 4789999999999976543322 2234677899999999999999999999999999999999
Q ss_pred CcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEE
Q 004034 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~ 681 (778)
|.++.||+++++.+... + .+|||+|||++++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++.
T Consensus 341 ~~~~~gy~~~~~~~~~~-~--~~g~~~TGDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~ 417 (487)
T PRK07638 341 PQFFMGYIIGGVLAREL-N--ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGV 417 (487)
T ss_pred ccceeeecCCHHHHhhh-c--cCCcEecCccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEec
Confidence 88999999999766543 2 36899999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 682 EHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 682 ~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+++..++.++++|+.. .. .+++++++++.|+.|++|..|+++++||+|++||++|++|++++..+
T Consensus 418 ~~~~~g~~~~~~v~~~----~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 482 (487)
T PRK07638 418 PDSYWGEKPVAIIKGS----AT---KQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQ 482 (487)
T ss_pred CchhcCCeeEEEEECC----CC---HHHHHHHHHHHhhcccCCcEEEEecccCCCCcccccHHHHHHHHhcc
Confidence 9988888899988742 11 57899999999999999999999999999999999999999988754
|
|
| >PRK08316 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=601.80 Aligned_cols=511 Identities=24% Similarity=0.311 Sum_probs=425.0
Q ss_pred cHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++++++|.++++ .+||++|+++. ++.+||.||.+++.++|..|.+.|+++||+|+++++|++++++++|||++
T Consensus 11 ~~l~~~l~~~a~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gi~~~~~V~l~~~~~~~~~~~~~a~~~ 83 (523)
T PRK08316 11 QTIGDILRRSAR-RYPDKTALVFG------DRSWTYAELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACAR 83 (523)
T ss_pred CCHHHHHHHHHH-HCCCCeEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 468899999998 89999999987 58999999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|+++.++.+++.++++.++++++++++... ..+.+..+.. . ...+. ..... ...
T Consensus 84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~----~-~~~~~-~~~~~-----~~~ 143 (523)
T PRK08316 84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALA---------PTAEAALALL----P-VDTLI-LSLVL-----GGR 143 (523)
T ss_pred cCcEEEecccccCHHHHHHHHHhCCCCEEEEccchH---------HHHHHHhhhc----C-cccee-eeecc-----ccc
Confidence 999999999999999999999999999999987542 1222222211 1 11111 10000 000
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
........+.+.....+...+.....++++++|+|||||||.||+|.++|++++.... .....+++.++|+++..+|+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~p~~ 222 (523)
T PRK08316 144 EAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYV-SCIVAGDMSADDIPLHALPLY 222 (523)
T ss_pred ccccchhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHH-HHHHHhCCCCCceEEEccCCc
Confidence 0011122233333222222233456788999999999999999999999999654433 345567899999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++...++.++..|+++++.+. +++..+++.++++++|++.++|+++..|.+... ....++++||.+++||+
T Consensus 223 h~~g~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gg~ 296 (523)
T PRK08316 223 HCAQLDVFLGPYLYVGATNVILDA----PDPELILRTIEAERITSFFAPPTVWISLLRHPD--FDTRDLSSLRKGYYGAS 296 (523)
T ss_pred hhhhHHHHHHHHHhcCceEEEecC----CCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcc--cccCCcccceEEEEcCC
Confidence 998866666778899999999864 488999999999999999999999999988754 23457789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++.++.+.+.+.++ ++++++.||+||++.+.............+++|+|+++++++|+|+++++++.|+.|||+++|
T Consensus 297 ~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~ 374 (523)
T PRK08316 297 IMPVEVLKELRERLP--GLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRS 374 (523)
T ss_pred cCCHHHHHHHHHHcC--CCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEEC
Confidence 999999999999875 478999999999987655433222234567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
+.++.||+++++.+...|. +|||+|||+|++++||+++++||.||+||++|++|+|.+||+.|.++|+|.+++|+
T Consensus 375 --~~~~~~y~~~~~~~~~~~~---~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~ 449 (523)
T PRK08316 375 --PQLMLGYWDDPEKTAEAFR---GGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVI 449 (523)
T ss_pred --CchhhhhcCCHHHHHHHhh---CCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEe
Confidence 8999999999988777652 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
+++++..++.+++++++.++.... .++|+++++++|+.|++|..+++++++|+|++||++|++|++++.+.+
T Consensus 450 ~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~~ 521 (523)
T PRK08316 450 GLPDPKWIEAVTAVVVPKAGATVT---EDELIAHCRARLAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGAF 521 (523)
T ss_pred cccCcccCCeEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhhc
Confidence 999988889999999988665433 567899999999999999999999999999999999999999997653
|
|
| >PRK06087 short chain acyl-CoA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=606.05 Aligned_cols=514 Identities=23% Similarity=0.349 Sum_probs=420.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|++..+ ++++||+||+++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 24 ~l~~~~~~~~~-~~pd~~a~~~~~-----~~~~Ty~~l~~~v~~la~~l~~~G~~~gd~V~i~~~n~~~~~~~~lA~~~~ 97 (547)
T PRK06087 24 SLADYWQQTAR-AMPDKIAVVDNH-----GASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKV 97 (547)
T ss_pred CHHHHHHHHHH-HCCCceEEEcCC-----CCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 37788999998 899999998642 478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++++++..... ...+.+.+....+ .....++.++....
T Consensus 98 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 161 (547)
T PRK06087 98 GAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQT----RPVDLILPLQNQL----PQLQQIVGVDKLAP-------- 161 (547)
T ss_pred CcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccc----cHHHHHHHHHhhC----CCCcEEEEeCCcCC--------
Confidence 9999999999999999999999999999997653211 1122222222222 33445554443210
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
......+.+.+.............++++++|+|||||||.||||+++|++++.. .......+++.++|++++..|++|
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~pl~h 239 (547)
T PRK06087 162 -ATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILAS-ERAYCARLNLTWQDVFMMPAPLGH 239 (547)
T ss_pred -CcCccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHH-HHHHHHhcCCCCCCeEEEecchHH
Confidence 001122333333222222223456789999999999999999999999996544 344555678899999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
.+++...++.++..|+++++.+. +++..+++.|+++++|++..+|+.+..+++... ....++++||.+++||++
T Consensus 240 ~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~--~~~~~~~~lr~i~~gG~~ 313 (547)
T PRK06087 240 ATGFLHGVTAPFLIGARSVLLDI----FTPDACLALLEQQRCTCMLGATPFIYDLLNLLE--KQPADLSALRFFLCGGTT 313 (547)
T ss_pred HHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCCEEeccHHHHHHHHhccc--cCCCCCCCeEEEEEcCCC
Confidence 99887788899999999999764 489999999999999999888777777766533 223467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+.+.+. + +++++.||+||++.+.+............+.|+|++++.++|+|+++++++.|+.|||+|+|
T Consensus 314 ~~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g- 388 (547)
T PRK06087 314 IPKKVARECQQR-G---IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRG- 388 (547)
T ss_pred CCHHHHHHHHHc-C---CcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEec-
Confidence 999999887664 4 78999999999987655332221122346789999999999999999999999999999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
+.+++||+++++.+...+.. +|||+|||+++++++|+++++||.||+||++|++|+|.+||++|.++|+|.+++|++
T Consensus 389 -~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~ 465 (547)
T PRK06087 389 -PNVFMGYLDEPELTARALDE--EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVA 465 (547)
T ss_pred -ccccccccCCHHHHHHHhCC--CCCcCcCceEEECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEe
Confidence 89999999999888776543 689999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCC-CCCCHHHHHHHHHHHH-hhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccC
Q 004034 681 VEHEVKGQGIYAFVTLVEG-VPYSEELRKSLVLAVR-KQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLD 755 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~-~~~~~~l~~~l~~~l~-~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~ 755 (778)
.+++..++.++++|+..+. ...+ .+++.++++ +.++.+++|..|.++++||+|.+||++|++|++.+.++..
T Consensus 466 ~~~~~~g~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~ 539 (547)
T PRK06087 466 MPDERLGERSCAYVVLKAPHHSLT---LEEVVAFFSRKRVAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLT 539 (547)
T ss_pred cCCCCcCceEEEEEEECCCCCCCC---HHHHHHHHHhccccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhh
Confidence 9988888999999998753 2222 467777775 5799999999999999999999999999999999886643
|
|
| >TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-66 Score=603.31 Aligned_cols=501 Identities=22% Similarity=0.317 Sum_probs=410.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+|+++|+++. .+++||+||.++++++|..|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 ~l~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~la~~~~ 96 (527)
T TIGR02275 24 PLTDILRDQAA-RYPDAIAIICG------NRQWSYRELDQRADNLAAGLTKLGIGQGDTAVVQLPNIAEFYIVFFALLKL 96 (527)
T ss_pred cHHHHHHHHHH-HCCCceEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHHc
Confidence 36788999998 89999999875 679999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++++++.++.+++.++++.++++++++++.... +.......+....+ +.++.++...... .
T Consensus 97 G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------~ 160 (527)
T TIGR02275 97 GIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSL----FDYDAFARQLQSKL----PTLRNIIVAGQTR--------V 160 (527)
T ss_pred CeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccc----cchHHHHHHHHhhC----CcceEEEEecCCC--------C
Confidence 999999999999999999999999999999865321 11111111111111 2333333322110 0
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.....+.+.......+.....++++++|+|||||||.||||+++|.+++.+.. .....+.+.++|++++.+|++|
T Consensus 161 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~-~~~~~~~~~~~d~~l~~~P~~h 235 (527)
T TIGR02275 161 ----EAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVR-RSVEICWLTQQTRYLCALPAAH 235 (527)
T ss_pred ----cchhhHHhhCcCccccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHH-HHHhhcCCCcCCEEEECCChHh
Confidence 00000111111111222345689999999999999999999999999655443 3455678889999999999999
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.+++.. .++.++..|+++++.+. +++..+++.++++++|++..+|++++.|.+.... ...+++++|.+++||+
T Consensus 236 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~gG~ 309 (527)
T TIGR02275 236 NYPLSSPGALGVFYAGGCVVLAPD----PSPTDCFPLIERHKVTVTALVPPAVALWMQAASK--SRYDLSSLKLLQVGGA 309 (527)
T ss_pred hhhhhHHHHHHHHhcCCeEEECCC----CCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccc--cCCCccceEEEEEcCC
Confidence 887544 47889999999988643 4789999999999999999999999998876542 3456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++++++.+.++ +++++.||+||++.... ..........+++|+|+ ++..++|+|++|++++.|+.|||+|+
T Consensus 310 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~-~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~ 385 (527)
T TIGR02275 310 KFSEAAARRVPAVFG---CQLQQVFGMAEGLVNYT-RLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTR 385 (527)
T ss_pred CCCHHHHHHHHHHhC---CeEEeeeccCccCcccc-CCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999887 68999999999754332 11111123456899999 48999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |.++.|||++++.+...+.. +|||+|||++++++||+++++||.||+||++|++|+|.|||++|.+||+|.+++|
T Consensus 386 g--~~~~~gY~~~~~~~~~~~~~--dg~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 461 (527)
T TIGR02275 386 G--PYTFRGYYKAPEHNAAAFDA--EGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAAL 461 (527)
T ss_pred C--CccchhhcCChhHhHhhcCc--CCCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEE
Confidence 9 89999999999988777644 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
+++++...++.++++|+++++. .+ .++|+++++++ ++.|++|..|+++++||+|++||++|++|+
T Consensus 462 ~~~~~~~~~~~~~a~vv~~~~~-~~---~~~l~~~l~~~~l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~ 527 (527)
T TIGR02275 462 VSMPDELLGEKSCAFIVVRDPA-LK---AAQLRRFLRERGLAEYKLPDRVEFIDSLPLTAVGKIDKKALR 527 (527)
T ss_pred EecCCcccccEEEEEEEECCCC-CC---HHHHHHHHHhCCCccccCCCEEEEeccCCCCCccceeHHhcC
Confidence 9999988889999999987653 22 57899999985 999999999999999999999999999874
|
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB. |
| >PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=603.41 Aligned_cols=501 Identities=23% Similarity=0.315 Sum_probs=413.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+||++|+++. ++++||+||.+++.++|..|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 22 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~v~~la~~L~~~gi~~g~~V~v~~~n~~~~~~~~lA~~~~ 94 (542)
T PRK06155 22 TLPAMLARQAE-RYPDRPLLVFG------GTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWL 94 (542)
T ss_pred CHHHHHHHHHH-HCCCCeEEEeC------CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 47789999998 89999999976 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++..++++++++++++++... ..+.+... ....+..++.++.... .
T Consensus 95 G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~-------~ 154 (542)
T PRK06155 95 GAIAVPINTALRGPQLEHILRNSGARLLVVEAALL---------AALEAADP----GDLPLPAVWLLDAPAS-------V 154 (542)
T ss_pred CCEEEEeccccCHHHHHHHHHhcCceEEEEChhhH---------HHHHHhcc----cccCcceEEEecCccc-------c
Confidence 99999999999999999999999999999976542 11111111 0122344554443211 0
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.........+.. ............++++++|+|||||||.||||+++|++++.. .......+++.+++++++..|++|
T Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~-~~~~~~~~~~~~~~~~l~~~pl~~ 232 (542)
T PRK06155 155 SVPAGWSTAPLP-PLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWW-GRNSAEDLEIGADDVLYTTLPLFH 232 (542)
T ss_pred ccccccchhhhc-ccCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHH-HHHHHHhcCCCCCCEEEEecCHHH
Confidence 000000000010 011111223456799999999999999999999999996444 444556788999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..++ ..++.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|.+.... .....+++|.++.+|
T Consensus 233 ~~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~l~~~~~g~-- 303 (542)
T PRK06155 233 TNAL-NAFFQALLAGATYVLEPR----FSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR--ESDRAHRVRVALGPG-- 303 (542)
T ss_pred HHHH-HHHHHHHHcCceEEeeCC----CCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCc--cccccCceEEEEEcC--
Confidence 8874 467899999999998753 4899999999999999999999999999877542 234567899887665
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++.+.+++.+.++ +++++.||+||++.++..... ...++++|.|+++++++|+|+++++++.|+.|||+|+|+
T Consensus 304 ~~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~---~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~ 377 (542)
T PRK06155 304 VPAALHAAFRERFG---VDLLDGYGSTETNFVIAVTHG---SQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRAD 377 (542)
T ss_pred CCHHHHHHHHHHcC---CCEEeeecccccCccccCCCC---CCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecC
Confidence 57888899988886 689999999999876543221 246678999999999999999999999999999999995
Q ss_pred CC-cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 601 WP-GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 601 ~p-~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
.| +++.||+++++.+...+ . +|||+|||+|++++||+++|+||.||+||++|.+|+|.|||++|.+||+|.+++|+
T Consensus 378 ~~~~~~~GY~~~~~~~~~~~-~--~~~~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~ 454 (542)
T PRK06155 378 EPFAFATGYFGMPEKTVEAW-R--NLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVF 454 (542)
T ss_pred CccccchhhcCCHHHHHHhh-c--CCcEeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 43 79999999998887764 2 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
+++++..++.+.+++++..+...+ ..+++++++++|+.|++|..|+++++||+|++||++|++|++++.
T Consensus 455 ~v~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~ 523 (542)
T PRK06155 455 PVPSELGEDEVMAAVVLRDGTALE---PVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV 523 (542)
T ss_pred eecccccCceEEEEEEECCCCCCC---HHHHHHHHHhhCcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence 999988888899999987665443 578999999999999999999999999999999999999999764
|
|
| >PRK07470 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=602.84 Aligned_cols=503 Identities=23% Similarity=0.361 Sum_probs=413.3
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|.++++ ++||++|+++. ++++||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 9 ~~~~~~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 81 (528)
T PRK07470 9 LAHFLRQAAR-RFPDRIALVWG------DRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLG 81 (528)
T ss_pred HHHHHHHHHH-HCCCceEEEEC------CccccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhCC
Confidence 5678888888 89999999975 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.+++++++++++++++.... .+....... .....++.+....
T Consensus 82 ~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~---------- 138 (528)
T PRK07470 82 AVWVPTNFRQTPDEVAYLAEASGARAMICHADFPE---------HAAAVRAAS----PDLTHVVAIGGAR---------- 138 (528)
T ss_pred eEEEecCccCCHHHHHHHHHhcCceEEEEcchhHH---------HHHHHHhhC----CcCceEEEeCCCc----------
Confidence 99999999999999999999999999999875421 111111111 2333444443211
Q ss_pred CCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh-hCCCCCcEEEEeCCcc
Q 004034 362 DGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCTADCG 439 (778)
Q Consensus 362 ~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~ 439 (778)
....+.+.+... ..........++++++|+|||||||.||||+++|++++.......... .+..++|+++..+|++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 216 (528)
T PRK07470 139 --AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLS 216 (528)
T ss_pred --ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccch
Confidence 012233332221 111223345678999999999999999999999999643333222222 2567789999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++ ..+ ..++.|++.++++.. .++++.+++.|+++++|++.++|++++.|.+... ....+++++|.+++||+
T Consensus 217 ~~~~~-~~~-~~~~~g~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~ 290 (528)
T PRK07470 217 HGAGI-HQL-CQVARGAATVLLPSE--RFDPAEVWALVERHRVTNLFTVPTILKMLVEHPA--VDRYDHSSLRYVIYAGA 290 (528)
T ss_pred hHHHH-HHH-HHHhcCceEEEeccc--CcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcC--cCCCCCcceEEEEEcCC
Confidence 98874 333 467888888887642 2488999999999999999999999999987654 23356789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCC------CCCCCCCCcCcCcCCceEEEECCCCceeCCCeee
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG------AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSG 593 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~------~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~G 593 (778)
++++.+.+++.+.+| .++++.||+||+++.+...... ......+++|+|++|++++|+|+++++++.|+.|
T Consensus 291 ~l~~~~~~~~~~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~G 367 (528)
T PRK07470 291 PMYRADQKRALAKLG---KVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETG 367 (528)
T ss_pred CCCHHHHHHHHHHhC---cHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCce
Confidence 999999999988887 5799999999998755432211 0123457899999999999999999999999999
Q ss_pred EEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCcc
Q 004034 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673 (778)
Q Consensus 594 EL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V 673 (778)
||+|+| +.++.||+++++.+...+. +|||+|||++++++||+++++||.||+||++|+||+|.|||++|.++|.|
T Consensus 368 el~i~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v 442 (528)
T PRK07470 368 EICVIG--PAVFAGYYNNPEANAKAFR---DGWFRTGDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAV 442 (528)
T ss_pred EEEEeC--CccchhhcCCHHHHHhhhc---CCcEecceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCc
Confidence 999999 8999999999988876653 68999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 674 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
.+++|++.+++..++.++++++..++...+ .++++++|++.||.|++|..++++++||+|++||++|+.|++++..+
T Consensus 443 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~~ 519 (528)
T PRK07470 443 SEVAVLGVPDPVWGEVGVAVCVARDGAPVD---EAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREELEER 519 (528)
T ss_pred eEEEEEeccCcccCceeEEEEEECCCCCCC---HHHHHHHHHHhhhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHhc
Confidence 999999999887788899999987664433 56899999999999999999999999999999999999999988754
|
|
| >PRK05620 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=609.07 Aligned_cols=523 Identities=19% Similarity=0.232 Sum_probs=417.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|++++. .+|+++|+++.++ .++.+||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus 11 ~~~~~l~~~a~-~~~~~~a~~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~~~ 86 (576)
T PRK05620 11 SLTRILEYGST-VHGDTTVTTWGGA---EQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVAC 86 (576)
T ss_pred cHHHHHHHHHH-hCCCceEEEEcCC---ceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence 37789999998 8999999998643 26899999999999999999986 7999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.+++++++++++|+++... ..+.+.+..+ +..+.++.++...... ....
T Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~i~~~~~~~~~~-~~~~ 152 (576)
T PRK05620 87 MGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLA---------EQLGEILKEC----PCVRAVVFIGPSDADS-AAAH 152 (576)
T ss_pred cCCEEeecccccCHHHHHHHHhccCCcEEEEChhhH---------HHHHHHHhhC----ccccEEEEecCccccc-chhc
Confidence 999999999999999999999999999999976532 2333333333 3344455443221000 0000
Q ss_pred CC-CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH-HHHHhhCCCCCcEEEEeCC
Q 004034 360 WQ-DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT-TFKYAFDYKPSDVYWCTAD 437 (778)
Q Consensus 360 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~-~~~~~~~~~~~d~~l~~~~ 437 (778)
.. ......|.+.++......+.....++++++|+|||||||+||||+++|++++..... .....+++.+++++++.+|
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~~~p 232 (576)
T PRK05620 153 MPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFLCCVP 232 (576)
T ss_pred cccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhcCCCCCCeEEEeCC
Confidence 00 112234555554333222333456799999999999999999999999996443322 1223467888999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|..+. ..++.++..|+++++.... +++..+++.|+++++|++..+|+++..|+..... ...+..+||.+++|
T Consensus 233 l~h~~g~-~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~g 306 (576)
T PRK05620 233 IYHVLSW-GVPLAAFMSGTPLVFPGPD---LSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLK--NPPERMSLQEIYVG 306 (576)
T ss_pred hHHhhhh-HHHHHHHhcCceEEecCCC---CCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhc--cCcccCceeEEEEc
Confidence 9999884 4567889999999887532 4889999999999999999999999988765321 11234689999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC--C----CCCCCCcCcCcCCceEEEECCCCceeC--C
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--W----PQKPGSATFPFFGVQPVIVDEKGVEIE--G 589 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~--~----~~~~~~~G~p~~g~~~~Ivd~~g~~~~--~ 589 (778)
|+++++++++++.+.++ +++++.||+||++...+...+.. . .....+.|++.++++++|+|+ +++++ .
T Consensus 307 G~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~ 382 (576)
T PRK05620 307 GSAVPPILIKAWEERYG---VDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTD 382 (576)
T ss_pred CCCCCHHHHHHHHHHhC---CceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCC
Confidence 99999999999988886 68999999999987544322111 0 012347899999999999997 77764 4
Q ss_pred CeeeEEEEecCCCcccccccCChhhh----hhhcc----------CCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCc
Q 004034 590 ECSGYLCIKSSWPGAFRTLYGDHERY----ETTYF----------KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655 (778)
Q Consensus 590 g~~GEL~v~g~~p~v~~gY~~~~~~~----~~~~~----------~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 655 (778)
+..|||+++| +.+++|||++++.+ ...|. ...+|||+|||++++++||+++|+||.||+||++|
T Consensus 383 ~~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G 460 (576)
T PRK05620 383 RNEGEIQVRG--NWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGG 460 (576)
T ss_pred CCceEEEEEc--CcccccccCCccccccccccccccccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCC
Confidence 6789999999 88999999998765 22221 01267999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCC
Q 004034 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735 (778)
Q Consensus 656 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 735 (778)
++|+|.|||++|.+||.|.+|+|++.+++..++.++++|++.++...++...++|+++++++|+.|++|+.|+++++||+
T Consensus 461 ~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~~P~ 540 (576)
T PRK05620 461 EWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPTRETAERLRDQLRDRLPNWMLPEYWTFVDEIDK 540 (576)
T ss_pred EEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcccccHHHHHHHHHhhCccccCCeEEEEeccCCC
Confidence 99999999999999999999999999998888899999998876544333468999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhcc
Q 004034 736 TRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 736 T~sGKi~R~~L~~~~~~~ 753 (778)
|.+||++|++|++++.+.
T Consensus 541 t~~GKv~r~~L~~~~~~~ 558 (576)
T PRK05620 541 TSVGKFDKKDLRQHLADG 558 (576)
T ss_pred CCcccCcHHHHHHHHhcC
Confidence 999999999999998854
|
|
| >PRK13390 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=599.42 Aligned_cols=492 Identities=23% Similarity=0.335 Sum_probs=397.1
Q ss_pred HhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeC
Q 004034 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (778)
Q Consensus 208 ~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl 287 (778)
.+++ .+|+++|+++.+ .++++||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 5 ~~a~-~~p~~~a~~~~~----~~~~lTy~el~~~~~~la~~L~~~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l 79 (501)
T PRK13390 5 THAQ-IAPDRPAVIVAE----TGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAI 79 (501)
T ss_pred hhhh-hCCCCcEEEecC----CCeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEecc
Confidence 3555 799999998742 25789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccc
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (778)
++.++.+++.+++++++++++++++... ....+. . ......+.+.... .....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~~~~-~------~~~~~~~~~~~~~-----------~~~~~ 132 (501)
T PRK13390 80 NHHLTAPEADYIVGDSGARVLVASAALD---------GLAAKV-G------ADLPLRLSFGGEI-----------DGFGS 132 (501)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEcchhh---------hHHHHh-h------hccceEEEecCcc-----------ccccc
Confidence 9999999999999999999999876431 111110 0 0111112111100 00111
Q ss_pred hhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEE--ccchHHHH---HHHHHHHhhCCCCCcEEEEeCCcchhh
Q 004034 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLH--TTGGYMVH---TATTFKYAFDYKPSDVYWCTADCGWIT 442 (778)
Q Consensus 368 ~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~--th~~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~ 442 (778)
+++...... + ......++++|+|||||||.||||++ +|.++... ........+++..+|+++..+|++|..
T Consensus 133 ~~~~~~~~~---~-~~~~~~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~ 208 (501)
T PRK13390 133 FEAALAGAG---P-RLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAFYDISESDIYYSSAPIYHAA 208 (501)
T ss_pred HHHHhcccC---C-CCCCCcccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHHhCCCCCCeEEecccchhhh
Confidence 222211110 0 01122357999999999999999996 45553321 112223457888999999999999988
Q ss_pred hhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCC
Q 004034 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522 (778)
Q Consensus 443 g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~ 522 (778)
++.+. +..+..|+++++.+. +++..+++.|+++++|++.++|+++..|+..........+++++|.++++|++++
T Consensus 209 ~~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~ 283 (501)
T PRK13390 209 PLRWC-SMVHALGGTVVLAKR----FDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCP 283 (501)
T ss_pred HHHHH-HHHHhcCceEEEcCC----cCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCC
Confidence 75443 345778999988753 4889999999999999999999999999875433233456789999999999999
Q ss_pred HHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCC
Q 004034 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602 (778)
Q Consensus 523 ~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p 602 (778)
+++.+.+.+.++ .++++.||+||+++++..... .....++++|+|+++ .++|+|+++++++.|+.|||+|++ +
T Consensus 284 ~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~~Gel~v~~--~ 356 (501)
T PRK13390 284 VDVKHAMIDWLG---PIVYEYYSSTEAHGMTFIDSP-DWLAHPGSVGRSVLG-DLHICDDDGNELPAGRIGTVYFER--D 356 (501)
T ss_pred HHHHHHHHHhcC---CceeeeecccccCceEEecch-hhccCCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--C
Confidence 999999998876 579999999999875443221 122456789999999 799999999999999999999999 8
Q ss_pred cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEe
Q 004034 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682 (778)
Q Consensus 603 ~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 682 (778)
+++.||+++++.+...+....+|||+|||+|++|+||+++|.||.||+||++|++|+|.|||++|.+||.|.|++|++++
T Consensus 357 ~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~ 436 (501)
T PRK13390 357 RLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVP 436 (501)
T ss_pred CccccccCChhhhHHhhccCCCceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEecc
Confidence 99999999999988877654578999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 683 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
++..++.++++|++.++...+++..++|+++++++|+.|++|..++++++||+|++||++|++|+
T Consensus 437 ~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~ 501 (501)
T PRK13390 437 DPEMGEQVKAVIQLVEGIRGSDELARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501 (501)
T ss_pred CcccCceeEEEEEecCCCCcchhhHHHHHHHHHHhcccCCCCcEEEEeccCCCCCccceehhhcC
Confidence 98888999999998866544445567999999999999999999999999999999999999984
|
|
| >PRK06187 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=597.81 Aligned_cols=507 Identities=27% Similarity=0.375 Sum_probs=428.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|.++++ .+|+++|+.+. ++.+||+||+++++++|+.|.+.|+++|++|+|+++|++++++++|||+++
T Consensus 7 ~l~~~l~~~~~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~g~~~~~~V~l~~~~~~~~~~~~la~~~~ 79 (521)
T PRK06187 7 TIGRILRHGAR-KHPDKEAVYFD------GRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKI 79 (521)
T ss_pred CHHHHHHHHHH-HCCCceEEEeC------CceEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 58899999998 89999999987 567999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++..+++.+++++++++.... ..+....+.+ +.++.++.++.... . .
T Consensus 80 G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~----~--~ 140 (521)
T PRK06187 80 GAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFV---------PLLAAILPQL----PTVRTVIVEGDGPA----A--P 140 (521)
T ss_pred CeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHH---------HHHHHHhhcc----CCccEEEEecCccc----c--c
Confidence 99999999999999999999999999999987532 2333333322 33445555543321 0 0
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.......+.+.+...+...+.....++++++|+|||||||.||+|.++|++++.. .......+++.++|++++.+|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~~~~~~~~~ 219 (521)
T PRK06187 141 LAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLH-SLAVCAWLKLSRDDVYLVIVPMFH 219 (521)
T ss_pred cccccccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHH-HHHHHHhhCCCCCCEEEEeCCchH
Confidence 1112233444444433333344567789999999999999999999999995544 444555789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..++... +.++..|+++++++. .++..+++.++++++|.++++|++++.|.+.... ...++++||.+++|||+
T Consensus 220 ~~~~~~~-~~~l~~G~~~v~~~~----~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~~~l~~v~~~Ge~ 292 (521)
T PRK06187 220 VHAWGLP-YLALMAGAKQVIPRR----FDPENLLDLIETERVTFFFAVPTIWQMLLKAPRA--YFVDFSSLRLVIYGGAA 292 (521)
T ss_pred HhhHHHH-HHHHHhCCEEEecCC----CCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCC--CccCcchhhEEEEcCcC
Confidence 8875444 459999999999865 2889999999999999999999999999987653 34577899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCC----CCCCCCcCcCcCCceEEEECCCCceeCC--CeeeE
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW----PQKPGSATFPFFGVQPVIVDEKGVEIEG--ECSGY 594 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~----~~~~~~~G~p~~g~~~~Ivd~~g~~~~~--g~~GE 594 (778)
+++++++++.+.++ +++++.||+||++.+......... .....++|+|++++.++|+|+++++++. |+.||
T Consensus 293 l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Ge 369 (521)
T PRK06187 293 LPPALLREFKEKFG---IDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGE 369 (521)
T ss_pred CCHHHHHHHHHHhC---cchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeE
Confidence 99999999999885 789999999999876554332211 1256789999999999999999999998 99999
Q ss_pred EEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 595 L~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
|++++ +.++.||+++++.+...+. +|||+|||+++++++|++++.||.||+||++|.+|+|.+||++|.++++|.
T Consensus 370 l~v~~--~~~~~~y~~~~~~~~~~~~---~~~~~tGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~ 444 (521)
T PRK06187 370 IIVRG--PWLMQGYWNRPEATAETID---GGWLHTGDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVA 444 (521)
T ss_pred EEEEC--cchhhhhcCCHHHHHHHhh---CCceeccceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCce
Confidence 99999 8999999999987777653 569999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+++|++++++..++.++++++++++...+ .++++++++++|+.+++|..|+++++||+|++||++|+.|++++.+
T Consensus 445 ~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~ 519 (521)
T PRK06187 445 EVAVIGVPDEKWGERPVAVVVLKPGATLD---AKELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE 519 (521)
T ss_pred EEEEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence 99999998887789999999988765443 5789999999999999999999999999999999999999999863
|
|
| >PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-66 Score=598.77 Aligned_cols=508 Identities=22% Similarity=0.319 Sum_probs=416.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++.+.+ +..+.+||+||.++++++|+.|.++|+++||+|+|+++|++++++++|||+++
T Consensus 8 ~l~~~~~~~a~-~~p~~~a~~~~~~~-~~~~~~ty~~l~~~v~~la~~L~~~g~~~~~~v~i~~~n~~~~~~~~la~~~~ 85 (517)
T PRK08008 8 HLRQMWDDLAD-VYGHKTALIFESSG-GVVRRYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKI 85 (517)
T ss_pred cHHHHHHHHHH-HCCCceEEEcccCC-CccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 58899999998 89999999986432 34588999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++++.+... ..+.+..... ...++.++..+.... .
T Consensus 86 G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~----~--- 146 (517)
T PRK08008 86 GAIMVPINARLLREESAWILQNSQASLLVTSAQFY---------PMYRQIQQED---ATPLRHICLTRVALP----A--- 146 (517)
T ss_pred CeEEEEcCcccCHHHHHHHHHhcCceEEEEecchh---------HHHHHHHhhc---cccCcEEEEecCCCc----c---
Confidence 99999999999999999999999999999987542 2233322221 133444544433210 0
Q ss_pred CCCcccchhhccCCCCC-CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
......+.+....... ........++++++|+|||||||.||||+++|++++.. .........+.+++++++..|++
T Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~ 224 (517)
T PRK08008 147 -DDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFA-GYYSAWQCALRDDDVYLTVMPAF 224 (517)
T ss_pred -cccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHH-HHHHhhhcCCCCCCeEEEecCcH
Confidence 0011223222221111 11123346789999999999999999999999996533 22223344677899999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++...++.++..|+++++.+. +++..+++.++++++|++.++|++++.++...... .....+++.++++ .
T Consensus 225 ~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~--~~~~~~l~~~~~~-~ 297 (517)
T PRK08008 225 HIDCQCTAAMAAFSAGATFVLLEK----YSARAFWGQVCKYRATITECIPMMIRTLMVQPPSA--NDRQHCLREVMFY-L 297 (517)
T ss_pred HHHHHHHHHHHHHhcCcEEEEccc----cCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCcc--ccccccceeeEEe-c
Confidence 988877888999999999999864 48899999999999999999999999988764321 1234578887775 5
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++.+.++.+.++ +++++.||+||++...+...... .....++|.|+++++++|+|+++++++.|+.|||+++|
T Consensus 298 ~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g 373 (517)
T PRK08008 298 NLSDQEKDAFEERFG---VRLLTSYGMTETIVGIIGDRPGD-KRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKG 373 (517)
T ss_pred CCCHHHHHHHHHHhC---CeEEeeccccccccccccCCccc-cccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeC
Confidence 889999999988886 78999999999987555443322 34567899999999999999999999999999999998
Q ss_pred C-CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 600 S-WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 600 ~-~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
+ .+++++|||++++.+.+.+.. +|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||.|.+++|
T Consensus 374 ~~~~~~~~gy~~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v 451 (517)
T PRK08008 374 VPGKTIFKEYYLDPKATAKVLEA--DGWLHTGDTGYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVV 451 (517)
T ss_pred CCCcchhhhHhCChHHHhhcccC--CCCeeccceEEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEE
Confidence 3 258999999999988777643 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
++++++..++.+.++|+++++...+ .++|++++++++++|++|..++++++||+|++||++|+.|+
T Consensus 452 ~g~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~ 517 (517)
T PRK08008 452 VGIKDSIRDEAIKAFVVLNEGETLS---EEEFFAFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517 (517)
T ss_pred EccCCCCCCceEEEEEEECCCCCCC---HHHHHHHHHhhcccccCCcEEEEeccCCCCCccceehhhcC
Confidence 9999888888999999998765443 57899999999999999999999999999999999999874
|
|
| >PRK07514 malonyl-CoA synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-66 Score=596.07 Aligned_cols=497 Identities=25% Similarity=0.350 Sum_probs=413.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.++|..++ .+|+++|+.+.+ ++.+||.||.++++++|++|+++|+++||+|+++++|++++++++|||+++
T Consensus 4 ~l~~~~~~~~--~~~~~~a~~~~~-----~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~v~i~~~~~~e~~v~~la~~~~ 76 (504)
T PRK07514 4 NLFDALRAAF--ADRDAPFIETPD-----GLRYTYGDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRA 76 (504)
T ss_pred cHHHHHHHHh--hCCCCeEEEeCC-----CCEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 3567777766 489999998742 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++..+++.++++++++++.... .+...... .....++.++....
T Consensus 77 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~-------- 134 (504)
T PRK07514 77 GAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFA---------WLSKIAAA-----AGAPHVETLDADGT-------- 134 (504)
T ss_pred CcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhH---------HHHHhhhc-----cCCceEEEecCCCc--------
Confidence 999999999999999999999999999999865421 11111111 12222333332110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..+.+.....+.........++++++|+|||||||.||+|+++|++++.. .......+++.++|++++..|+.|
T Consensus 135 -----~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~~ 208 (504)
T PRK07514 135 -----GSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSN-ALTLVDYWRFTPDDVLIHALPIFH 208 (504)
T ss_pred -----ccHHHhhhhcCcccCcccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHH-HHHHHHHhCCCCccEEEEecchHH
Confidence 00111111112222233456899999999999999999999999995544 445556788999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..++.+.++.+++.|+++++.+. .++..+++.+ .++|++.++|+++..+++... .....++++|.+++||++
T Consensus 209 ~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~ 280 (504)
T PRK07514 209 THGLFVATNVALLAGASMIFLPK----FDPDAVLALM--PRATVMMGVPTFYTRLLQEPR--LTREAAAHMRLFISGSAP 280 (504)
T ss_pred HHHHHHHHHHHHhcCcEEEECCC----CCHHHHHHHH--HhheeeecHHHHHHHHHcCCC--CCcccccceeeEEecCCC
Confidence 98877788899999999999854 4789999999 479999999999999987643 233467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~GEL~v~g 599 (778)
+++++++++.+.++ +++++.||+||++........ .....+++|.|+++++++|+| +++++++.|+.|||+|+|
T Consensus 281 ~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~ 355 (504)
T PRK07514 281 LLAETHREFQERTG---HAILERYGMTETNMNTSNPYD--GERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKG 355 (504)
T ss_pred CCHHHHHHHHHHhC---CcceeecccccccccccCCcc--ccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEec
Confidence 99999999999886 679999999999865443221 123467899999999999999 789999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
|+++.||+++++.+...|.. +|||+|||+++++++|+++++||.||+||++|++|+|.|||++|.++++|.+++|+
T Consensus 356 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~ 431 (504)
T PRK07514 356 --PNVFKGYWRMPEKTAEEFRA--DGFFITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVI 431 (504)
T ss_pred --CCccccccCCchhhhhhccc--CCCeeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEE
Confidence 89999999999888776643 67999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+++++..++.++++++..++...+ .++|+++++++|+.+++|..|+++++||+|++||++|++|++++.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~ 501 (504)
T PRK07514 432 GVPHPDFGEGVTAVVVPKPGAALD---EAAILAALKGRLARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501 (504)
T ss_pred eCCCCCcCceEEEEEEECCCCCCC---HHHHHHHHHhhcccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence 999887788999999987655433 4689999999999999999999999999999999999999998764
|
|
| >PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=595.05 Aligned_cols=479 Identities=26% Similarity=0.362 Sum_probs=403.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++++.|+++++ .+||++|+++. .+.+||.||+++++++|++|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 3 ~~~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~ 75 (483)
T PRK03640 3 TMPNWLKQRAF-LTPDRTAIEFE------EKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQL 75 (483)
T ss_pred cHHHHHHHHHH-hCCCceEEEeC------CeeeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 46788999998 89999999976 589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++..++++++++++++++..... .... .. +.
T Consensus 76 G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-------------~~~~----~~----~~-------------- 120 (483)
T PRK03640 76 GAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAK-------------LIPG----IS----VK-------------- 120 (483)
T ss_pred CcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHH-------------Hhhh----cc----cc--------------
Confidence 9999999999999999999999999999997653210 0000 00 00
Q ss_pred CCCcccchhhccCC-CCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPK-YPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
+.+.... ...........++++++|+|||||||.||+|+++|++++..... ....+++.++|++++.+|++
T Consensus 121 -------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~-~~~~~~~~~~d~~l~~~p~~ 192 (483)
T PRK03640 121 -------FAELMNGPKEEAEIQEEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVG-SALNLGLTEDDCWLAAVPIF 192 (483)
T ss_pred -------HHHHhhcccccCCCCCCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHH-HHHhcCCCcCcEEEEecCHH
Confidence 0000000 00111122346789999999999999999999999996554433 44457899999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.++ ..++.+|..|+++++.+. .++..+++.++++++|++.++|+++..|.+..... ....+||.+++||+
T Consensus 193 ~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~---~~~~~lr~~~~~g~ 264 (483)
T PRK03640 193 HISGL-SILMRSVIYGMRVVLVEK----FDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG---TYPSSFRCMLLGGG 264 (483)
T ss_pred HHHHH-HHHHHHHhcCCEEEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc---ccCCcceEEEEcCC
Confidence 99885 457889999999999864 48999999999999999999999999998654321 23468999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
++++.+.+++.+. + +++++.||+||++...+..........++++|+|+++++++|+|+ +++++.|+.|||+|+|
T Consensus 265 ~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g 339 (483)
T PRK03640 265 PAPKPLLEQCKEK-G---IPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKG 339 (483)
T ss_pred CCCHHHHHHHHHh-C---CCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecC-CCcCCCCCceEEEEEC
Confidence 9999999888764 4 789999999998764332222222346789999999999999985 4899999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
|+++.||+++++.+...+. +|||+|||++++++||+++++||+||++|++|.+|++.|||++|.++|+|.+++|+
T Consensus 340 --~~~~~gy~~~~~~~~~~~~---~~~~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~ 414 (483)
T PRK03640 340 --PNVTKGYLNREDATRETFQ---DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVV 414 (483)
T ss_pred --cchhhhhcCCHHHHHHHHh---cCCeeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 8999999999988777652 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+.+++..++.++++++..... + .+++++++++.|++|++|..|+++++||+|++||++|++|++++.+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~--~---~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~~ 482 (483)
T PRK03640 415 GVPDDKWGQVPVAFVVKSGEV--T---EEELRHFCEEKLAKYKVPKRFYFVEELPRNASGKLLRHELKQLVEE 482 (483)
T ss_pred eCCCcccCCceEEEEEeCCCC--C---HHHHHHHHHHhccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHhh
Confidence 998887788888988865433 2 4678999999999999999999999999999999999999998863
|
|
| >PRK08315 AMP-binding domain protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=601.61 Aligned_cols=519 Identities=21% Similarity=0.286 Sum_probs=422.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++|+++|+++.+ ..+.+||+||.++++++|+.|.+.|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~~~-~~~~~~ai~~~~----~~~~~Ty~~l~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 91 (559)
T PRK08315 17 TIGQLLDRTAA-RYPDREALVYRD----QGLRWTYREFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKI 91 (559)
T ss_pred cHHHHHHHHHH-HCCCCeEEEEcC----CCeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHh
Confidence 57899999998 899999999853 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHh---------hcCCCccEEEEEccCC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA---------KSGISVDVCLTYENQS 351 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vi~~~~~~ 351 (778)
|++++|++|.++.+++..++++++++++|++++.... .....+.+....+. ...+....++.++...
T Consensus 92 G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (559)
T PRK08315 92 GAILVTINPAYRLSELEYALNQSGCKALIAADGFKDS----DYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEK 167 (559)
T ss_pred CeEEEecCccCCHHHHHHHHHhcCCCEEEEecccccc----chHHHHHHhhhhhhcccccccccccCCCceeEEeecccC
Confidence 9999999999999999999999999999998764321 01111111111110 0001122233222211
Q ss_pred ccccccccCCCCcccchhhccCCC------CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKY------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD 425 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~ 425 (778)
. .....|.+..... ..........++++++|+|||||||.||||.++|++++ .........++
T Consensus 168 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~-~~~~~~~~~~~ 236 (559)
T PRK08315 168 H----------PGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNIL-NNGYFIGEAMK 236 (559)
T ss_pred C----------cccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHH-HHHHHHHHhcC
Confidence 0 0011222221110 00112233567889999999999999999999999965 44445566788
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccccc
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~ 505 (778)
+.++|+++...|+.|..++...++.+|..|+++++... .+++..+++.++++++|+++++|+++..++..... ..
T Consensus 237 ~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~---~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~--~~ 311 (559)
T PRK08315 237 LTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGE---GFDPLATLAAVEEERCTALYGVPTMFIAELDHPDF--AR 311 (559)
T ss_pred CCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecC---CCCHHHHHHHHHHcCCeEEecchHHHHHHHhCccc--CC
Confidence 99999999999999999888888999999999996543 25899999999999999999999999988876542 33
Q ss_pred CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC-CCCCCCCcCcCcCCceEEEECCC-
Q 004034 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEK- 583 (778)
Q Consensus 506 ~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~g~~~~Ivd~~- 583 (778)
.++++||.++++||++++++++.+.+.++. .++++.||+||++.+++...... ...++.++|+|++++.++|+|++
T Consensus 312 ~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~ 389 (559)
T PRK08315 312 FDLSSLRTGIMAGSPCPIEVMKRVIDKMHM--SEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPET 389 (559)
T ss_pred CCchhhheeEecCCCCCHHHHHHHHHHcCC--cceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCcc
Confidence 467899999999999999999999998873 45999999999987654332211 12356789999999999999987
Q ss_pred CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHH
Q 004034 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663 (778)
Q Consensus 584 g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eI 663 (778)
+++++.|+.|||+|+| +++++||+++++.+...+.. ++||+|||++++++||+++|+||.||+||++|++|+|.||
T Consensus 390 ~~~~~~g~~GEl~v~g--~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eI 465 (559)
T PRK08315 390 GETVPRGEQGELCTRG--YSVMKGYWNDPEKTAEAIDA--DGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPREI 465 (559)
T ss_pred CCcCCCCCceEEEEEC--chhhhhhcCChhHHhhcCCC--CCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHHHH
Confidence 9999999999999999 89999999999877665533 6799999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccH
Q 004034 664 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743 (778)
Q Consensus 664 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R 743 (778)
|++|.++|+|.+++|++++++..++.+++||++..+...+ .++++++++++||.|++|..|+++++||+|++||++|
T Consensus 466 E~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GK~~r 542 (559)
T PRK08315 466 EEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLT---EEDVRDFCRGKIAHYKIPRYIRFVDEFPMTVTGKIQK 542 (559)
T ss_pred HHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCC---HHHHHHHHHhhcccccCCcEEEEcccCCCCCCCceeH
Confidence 9999999999999999999887788899999987654433 5689999999999999999999999999999999999
Q ss_pred HHHHHHHhcc
Q 004034 744 RILRKIASRQ 753 (778)
Q Consensus 744 ~~L~~~~~~~ 753 (778)
++|++++...
T Consensus 543 ~~L~~~~~~~ 552 (559)
T PRK08315 543 FKMREMMIEE 552 (559)
T ss_pred HHHHHHHHhh
Confidence 9999987653
|
|
| >PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-67 Score=626.75 Aligned_cols=500 Identities=20% Similarity=0.266 Sum_probs=393.9
Q ss_pred HHHHHHHHhhhccCCC-eEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
+++++|+++++ ++|+ ++|+... ..+++||+||.++++++|++|++. +++||+|+|+++|++|+++++|||++
T Consensus 205 t~~~~l~~~~~-~~p~~~~a~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~Val~~~n~~e~~~~~lA~~~ 277 (718)
T PRK08043 205 TLYEALLSAQY-RYGAGKPCIEDV-----NFTPDSYRKLLKKTLFVGRILEKY-SVEGERIGLMLPNATISAAVIFGASL 277 (718)
T ss_pred CHHHHHHHHHH-HhCCCCcceEcC-----CCCcccHHHHHHHHHHHHHHHHHh-cCCCceEEEEcCCcHHHHHHHHHHHH
Confidence 36788999888 8998 5787642 147899999999999999999987 59999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|+++.++.+++++++++++++++|++++.....+...+ ...+ ..+. ++.+++... ...
T Consensus 278 ~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~-------~~~~----~~~~-~i~~~~~~~----~~~ 341 (718)
T PRK08043 278 RRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHL-------PEQL----TQVR-WVYLEDLKD----DVT 341 (718)
T ss_pred cCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCCh-------hhhh----cccc-EEEhhhhhh----hcc
Confidence 99999999999999999999999999999997654211000000 0001 1111 222221100 000
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
... ......+... + ........++|+++|+|||||||.||||+++|++++.+ .......+++.++|++++.+|++
T Consensus 342 ~~~-~~~~~~~~~~--~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~-~~~~~~~~~~~~~d~~l~~~Pl~ 416 (718)
T PRK08043 342 TAD-KLWIFAHLLM--P-RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLAN-VEQIKTIADFTPNDRFMSALPLF 416 (718)
T ss_pred hhH-HHHHHHHHhC--C-ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHH-HHHHHHhhCCCccCeEEEcCcch
Confidence 000 0000000000 0 01112346799999999999999999999999996544 44455667899999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++...++.+|..|+++++.+.. .++..+++.+.++++|+++.+|+++..+.+.. ...++++||.+++|||
T Consensus 417 h~~g~~~~~~~~l~~G~~vv~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~----~~~~~~~lr~i~~gg~ 489 (718)
T PRK08043 417 HSFGLTVGLFTPLLTGAEVFLYPSP---LHYRIVPELVYDRNCTVLFGTSTFLGNYARFA----NPYDFARLRYVVAGAE 489 (718)
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCCc---ccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc----CcccccceEEEEEeCc
Confidence 9998877889999999999998642 35678899999999999999999998876642 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
++++++.+++.+.+| +++++.||+||++.+.+...+. ..+++++|+|++|++++|+|+++. ++.|||+++|
T Consensus 490 ~l~~~~~~~~~~~~g---~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~~~i~d~~~~----~~~Gel~v~g 560 (718)
T PRK08043 490 KLQESTKQLWQDKFG---LRILEGYGVTECAPVVSINVPM--AAKPGTVGRILPGMDARLLSVPGI----EQGGRLQLKG 560 (718)
T ss_pred cCCHHHHHHHHHHcC---CCeecccCcccccceEEecCCc--ccCCCCCCCcCCCCeeEEecCCCC----CCceEEEEec
Confidence 999999999998886 7899999999998765543322 245789999999999999997653 4569999999
Q ss_pred CCCcccccccC--Chhhhhhhcc-----CCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 600 SWPGAFRTLYG--DHERYETTYF-----KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 600 ~~p~v~~gY~~--~~~~~~~~~~-----~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
|+++.|||+ +++.+..... ...+|||+|||+|++|+||+++|+||+||+||++|++|+|.|||++|.+|+.
T Consensus 561 --~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~ 638 (718)
T PRK08043 561 --PNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSP 638 (718)
T ss_pred --CCccccccCCCCcccccccccccccccccCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCc
Confidence 899999998 4442111100 0126899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
+.+++|++.+++..++.++++++. ...+ .++|+++++++ |+.|++|..|+++++||+|++|||||++|++++.
T Consensus 639 ~~~~avv~~~~~~~ge~~v~~~~~---~~~~---~~~l~~~~~~~~l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~ 712 (718)
T PRK08043 639 DKQHATAIKSDASKGEALVLFTTD---SELT---REKLQQYAREHGVPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVD 712 (718)
T ss_pred cceEEEEEccCCCCCceEEEEEcC---cccC---HHHHHHHHHhcCCCcccCCceEEEecccCcCCCCCcCHHHHHHHHh
Confidence 999999999888888888888742 2222 46799999987 9999999999999999999999999999999876
Q ss_pred c
Q 004034 752 R 752 (778)
Q Consensus 752 ~ 752 (778)
+
T Consensus 713 ~ 713 (718)
T PRK08043 713 E 713 (718)
T ss_pred c
Confidence 4
|
|
| >PRK07008 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-66 Score=599.63 Aligned_cols=511 Identities=21% Similarity=0.263 Sum_probs=411.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+.++. .+|+++++.+... +..+.+||.||.++++++|++|.++|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~l~~~~~-~~~~~~~~~~~~~--~~~~~~Ty~el~~~~~~~a~~L~~~g~~~~d~v~i~~~~~~~~~~~~la~~~~ 87 (539)
T PRK07008 11 LISSLIAHAAR-HAGDTEIVSRRVE--GDIHRYTYRDCERRAKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87 (539)
T ss_pred CHHHHHHHHHh-hCCCceEEEeecc--CcceEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 47788998887 7888888765311 22478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++++++... +.+.+....+ ..+..++.+.+... ...
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~ 149 (539)
T PRK07008 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFL---------PLVDALAPQC----PNVKGWVAMTDAAH-----LPA 149 (539)
T ss_pred CcEEeecccccCHHHHHHHHhccCCcEEEEcchhH---------HHHHHHHhhC----CCceEEEEEccCCc-----ccc
Confidence 99999999999999999999999999999886542 2233322222 33444444433211 000
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHH-HHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA-TTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~-~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.....+.|++...............++++++|+|||||||.||||+++|++++.+.. ......+++.++|++++..|++
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (539)
T PRK07008 150 GSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMF 229 (539)
T ss_pred CCcccccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhcccccCCCCCceEEecCchH
Confidence 011123444443322222223345678999999999999999999999999654332 2233457788899999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++ ..++.++..|+++++.... +++..++++++++++|++..+|+++..|++.... ...++++||.++++|+
T Consensus 230 h~~~~-~~~~~~l~~G~~~~~~~~~---~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~--~~~~~~~l~~~~~~G~ 303 (539)
T PRK07008 230 HVNAW-GLPYSAPLTGAKLVLPGPD---LDGKSLYELIEAERVTFSAGVPTVWLGLLNHMRE--AGLRFSTLRRTVIGGS 303 (539)
T ss_pred HhhhH-HHHHHHHhcCceEEEecCC---cCHHHHHHHHHHcCCEEEEechHHHHHHHhcccc--cCCCcccceEEEEcCC
Confidence 87763 3457789999999987532 4889999999999999999999999999876542 2456789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---------CCCCCCCcCcCcCCceEEEECCCCceeCCC
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---------WPQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---------~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g 590 (778)
++++++++++.+.++ +++++.||+||++...+...... ......++|+|+++++++|+|+++++++.+
T Consensus 304 ~l~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~ 380 (539)
T PRK07008 304 ACPPAMIRTFEDEYG---VEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWD 380 (539)
T ss_pred CCCHHHHHHHHHHhC---CceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCC
Confidence 999999999999886 68999999999986543221100 001245789999999999999999888753
Q ss_pred --eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 591 --CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 591 --~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
+.|||+++| |.++.||+++++. . +. +|||+|||++++|+||+++++||.||+||++|++|+|.|||++|.
T Consensus 381 ~~~~Gei~v~g--~~~~~gy~~~~~~---~-~~--~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 452 (539)
T PRK07008 381 GKAFGDLQVRG--PWVIDRYFRGDAS---P-LV--DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAV 452 (539)
T ss_pred CCcceEEEEeC--CccchhhcCChhh---h-hc--CCCcccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHH
Confidence 579999999 8899999999832 2 22 689999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+||.|.+++|++++++..++.++++|+..++...+ .++|+++++++|++|++|+.|+++++||+|++||++|++|++
T Consensus 453 ~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~ 529 (539)
T PRK07008 453 AHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVT---REELLAFYEGKVAKWWIPDDVVFVDAIPHTATGKLQKLKLRE 529 (539)
T ss_pred hCCceeEEEEEecCCchhccceEEEEEeCCCCccC---HHHHHHHHHhhcccccCCeEEEEecCCCCCCccceeHHHHHH
Confidence 99999999999999887788899999887654433 578999999999999999999999999999999999999999
Q ss_pred HHhc
Q 004034 749 IASR 752 (778)
Q Consensus 749 ~~~~ 752 (778)
++.+
T Consensus 530 ~~~~ 533 (539)
T PRK07008 530 QFRD 533 (539)
T ss_pred HHHh
Confidence 8874
|
|
| >TIGR02262 benz_CoA_lig benzoate-CoA ligase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-66 Score=595.59 Aligned_cols=507 Identities=28% Similarity=0.406 Sum_probs=421.7
Q ss_pred cccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 198 ~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
.+|.+++++++++...+||++|++.. .+.+||.||.++++++|++|++.|+++|++|+++++|+++++++++||
T Consensus 2 ~~~~~~~~~~~~~~~~~p~~~a~~~~------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~v~l~~~~~~~~~~~~~a~ 75 (508)
T TIGR02262 2 KYNAAEDLLDRNVVEGRGGKTAFIDD------ISSLSYGELEAQVRRLGAALRRLGVKREERVLLLMLDGVDFPIAFLGA 75 (508)
T ss_pred cchHHHHHHHHHHhcccCCceEEEeC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Confidence 35789999998743279999999865 678999999999999999999999999999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|+++.++.+++.++++.++++++|+++... ..+.+....+ +....++..+...
T Consensus 76 ~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~------ 136 (508)
T TIGR02262 76 IRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELL---------PVIKAALGKS----PHLEHRVVVGRPE------ 136 (508)
T ss_pred HHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhH---------HHHHHHHhcC----CCccEEEEeCCCC------
Confidence 99999999999999999999999999999999986532 2222222222 3344444433211
Q ss_pred ccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCC
Q 004034 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 437 (778)
.....+.+..........+....++++++|+|||||||.||||+++|+++...........+++.++|+++...|
T Consensus 137 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 211 (508)
T TIGR02262 137 -----AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLGIREDDVVFSAAK 211 (508)
T ss_pred -----cccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhcCCCCCCEEEEcCc
Confidence 011222222222222222334567899999999999999999999999966554433455678999999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|+.++...++.++..|+++++.++. +++..+++.|+++++|.+.++|+++..++.... .......++|.++++
T Consensus 212 ~~~~~~~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~--~~~~~~~~l~~~~~~ 286 (508)
T TIGR02262 212 LFFAYGLGNALTFPMSVGATTVLMGER---PTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPN--LPAEDQVRLRLCTSA 286 (508)
T ss_pred hHHHHHHHHHHHHHHHcCceEEEeCCC---CCHHHHHHHHHHHCCcEEecchHHHHHHhcCcc--ccccccccceeEEEc
Confidence 999988777788899999999998643 478999999999999999999999988876543 222346789999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEE
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCI 597 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v 597 (778)
|+++++++++.|.+.++ +++++.||+||++.+.+..... ....+++|+|++|+.++|+|+++++++.|+.|||+|
T Consensus 287 G~~l~~~~~~~~~~~~~---~~v~~~YG~tE~~~~~~~~~~~--~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i 361 (508)
T TIGR02262 287 GEALPAEVGQRWQARFG---VDIVDGIGSTEMLHIFLSNLPG--DVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLI 361 (508)
T ss_pred CCCCCHHHHHHHHHHhC---CchhhCccccccCceeecCCcc--CCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 99999999999999886 6899999999998755433221 235678999999999999999999999999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
+| +.++.||+++++.+...+. +|||+|||++++++||.++++||.||+||++|.+|+|.|||++|.+||+|.+++
T Consensus 362 ~~--~~~~~gY~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~ 436 (508)
T TIGR02262 362 SG--PSSATMYWNNRAKTRDTFQ---GEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAA 436 (508)
T ss_pred ec--CccccccCCCHHHhHhhhh---cCceeccceEEEcCCccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEE
Confidence 99 8999999999988776552 589999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
+++.++....+.+.+|+++.++....+.+.++|+++++++|+++++|..++++++||+|++||++|+.|+++
T Consensus 437 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~ 508 (508)
T TIGR02262 437 VVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRWIVFVDDLPKTATGKIQRFKLREG 508 (508)
T ss_pred EEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCceEEEecCCCCCCCCcEehhhccCC
Confidence 999888777788999999876544333446889999999999999999999999999999999999998763
|
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. |
| >PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-67 Score=605.66 Aligned_cols=494 Identities=19% Similarity=0.189 Sum_probs=376.3
Q ss_pred ccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
||-+.++|+++++ ++|+++|+++.+. +.++++||+||.++++++|++|.++ ++||+|+|+++|++++++++|||+
T Consensus 1 ~~~~~~~l~~~~~-~~~~~~a~~~~~~--~~~~~~ty~el~~~~~~lA~~L~~~--~~g~~V~l~~~~~~e~~~~~la~~ 75 (525)
T PRK05851 1 MNELAAALSDAMT-ASGRDLVVLDRES--GLWRRHPWPEVHGRAENVAARLLDR--DRPGAVGLVGEPTVELVAAIQGAW 75 (525)
T ss_pred CchHHHHHHHHhc-CCCCceEEeCCCC--CcceeecHHHHHHHHHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHHH
Confidence 3556788888888 8999999987632 2358999999999999999999988 899999999999999999999999
Q ss_pred HhCCEEEeCCCC--------CCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccC
Q 004034 279 RIGAVHSVVFAG--------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 279 ~~Gav~vpl~p~--------~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 350 (778)
++|++++ ++|. ...+++.+++++++++++|+++... ..+.+. . ..+ .+.+.
T Consensus 76 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~---~----~~~----~~~~~ 134 (525)
T PRK05851 76 LAGAAVS-ILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHL---------ERLRAV---D----SSV----TVHDL 134 (525)
T ss_pred HcCCCCc-CCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHH---------HHHHHh---h----ccc----ccccc
Confidence 9999865 4442 2335667789999999999875431 111110 0 000 00000
Q ss_pred CccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCC-CC
Q 004034 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK-PS 429 (778)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~-~~ 429 (778)
. ..... ....+.....+++++||+|||||||+||||+++|++++.+ .......+++. ++
T Consensus 135 ~------------------~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~~ 194 (525)
T PRK05851 135 A------------------TAAHT-NRSASLTPPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSN-LRGLNARVGLDAAT 194 (525)
T ss_pred c------------------ccccc-cccccCCCCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHH-HHHHHHHhCCCCCC
Confidence 0 00000 0000112246799999999999999999999999996544 44556678888 89
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~ 509 (778)
|++++++|++|++++ ..++.+|+.|+++++.+......++..+++.++++++|++..+|.++..+.+.... ....+++
T Consensus 195 d~~l~~~pl~h~~g~-~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~-~~~~~l~ 272 (525)
T PRK05851 195 DVGCSWLPLYHDMGL-AFLLTAALAGAPLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARR-VSDVDLG 272 (525)
T ss_pred CeEEEcCCCccCccH-HHHHHHHHcCCeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhcc-ccCCCHH
Confidence 999999999999986 46788999999999975322223678899999999999886666555555443221 2234678
Q ss_pred ceeEEEEecCCCCHHHHHHHHHH---hCCCCcceecccccccccceecccCCCC-------------CCCCCCCcCcCcC
Q 004034 510 SLRVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA-------------WPQKPGSATFPFF 573 (778)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~---~g~~~~~i~~~YG~TE~g~~~~~~~~~~-------------~~~~~~~~G~p~~ 573 (778)
+||.+++||++++++++++|.+. +|.....+++.||+||++.+++...++. ...+.+++|+|++
T Consensus 273 ~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~ 352 (525)
T PRK05851 273 ALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIP 352 (525)
T ss_pred HhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCC
Confidence 99999999999999999998875 3422245999999999986554332210 1123468999999
Q ss_pred CceEEEECCCC-ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEE
Q 004034 574 GVQPVIVDEKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652 (778)
Q Consensus 574 g~~~~Ivd~~g-~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Ik 652 (778)
|++++|+|+++ .+++.|+.|||+|+| |++++|||++++.. .+|||+|||+|+++ +|+|+|+||.||+||
T Consensus 353 g~~v~i~d~~~~~~~~~g~~GEl~v~g--~~~~~GY~~~~~~~-------~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~ 422 (525)
T PRK05851 353 GMEVRISPGDGAAGVAGREIGEIEIRG--ASMMSGYLGQAPID-------PDDWFPTGDLGYLV-DGGLVVCGRAKELIT 422 (525)
T ss_pred CcEEEEECCCCCccCCCCCeEEEEEec--CchhhccccCCccC-------CCCceeccceEEEE-CCEEEEEeecCCEEE
Confidence 99999999876 468999999999999 89999999998532 26799999999996 899999999999999
Q ss_pred eCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECC-
Q 004034 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP- 731 (778)
Q Consensus 653 i~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~- 731 (778)
++|+||+|.|||++|.+||+|.+|+|++++++..++.+.++|+........+++.++++++|...+ +++|..+++++
T Consensus 423 ~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l--~~~P~~~~~v~~ 500 (525)
T PRK05851 423 VAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAAEFRGPDEAGARSEVVQRVASEC--GVVPSDVVFVAP 500 (525)
T ss_pred ECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEEEecCcchHHHHHHHHHHHHHHh--CCCccEEEEECC
Confidence 999999999999999999999999999999887777777777654211111233344444444443 28999999998
Q ss_pred -CCCCCCCCcccHHHHHHHHhc
Q 004034 732 -GLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 732 -~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+||+|++|||+|++|++.+.+
T Consensus 501 ~~lP~t~~GKi~r~~L~~~~~~ 522 (525)
T PRK05851 501 GSLPRTSSGKLRRLAVKRSLEA 522 (525)
T ss_pred CCcCcCcchHHHHHHHHHHHHh
Confidence 899999999999999998753
|
|
| >PLN02330 4-coumarate--CoA ligase-like 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=603.22 Aligned_cols=501 Identities=21% Similarity=0.306 Sum_probs=411.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|.++++ .+|+++|+++.. .++.+||+||.++++++|..|++.|+++||+|+++++|++++++++|||+++
T Consensus 29 ~~~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~~ 103 (546)
T PLN02330 29 TLPDFVLQDAE-LYADKVAFVEAV----TGKAVTYGEVVRDTRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAA 103 (546)
T ss_pred cHHHHHhhhhh-cCCCccEEEecC----CCCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHh
Confidence 47788888888 899999998642 1478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.+++++++++++|+++..... ++.+ ... ++.++....
T Consensus 104 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~-----~~~-~i~~~~~~~-------- 156 (546)
T PLN02330 104 GGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGK-------------VKGL-----GLP-VIVLGEEKI-------- 156 (546)
T ss_pred CcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhh-------------Hhhc-----CCc-EEEecCCCC--------
Confidence 9999999999999999999999999999998764321 1111 111 233332110
Q ss_pred CCCcccchhhccCCCC---CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCC----CCcEEE
Q 004034 361 QDGRDIWWQDVVPKYP---TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK----PSDVYW 433 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~---~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~----~~d~~l 433 (778)
.....|.+.+.... ...+.....++++++|+|||||||.||||+++|++++.+... ..+++. ..++++
T Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~---~~~~~~~~~~~~~~~~ 231 (546)
T PLN02330 157 --EGAVNWKELLEAADRAGDTSDNEEILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCS---SLFSVGPEMIGQVVTL 231 (546)
T ss_pred --CCcccHHHHHhhccccCcccccccCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHH---HhhccCccccCceEEE
Confidence 01122443332211 111223445789999999999999999999999996554332 123333 346889
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC--ce
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK--SL 511 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~--sL 511 (778)
...|++|..++...++.+|..|+++++.+. +++..+++.++++++|.+..+|+++..|++... ..+.++. ++
T Consensus 232 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~--~~~~~~~~~~l 305 (546)
T PLN02330 232 GLIPFFHIYGITGICCATLRNKGKVVVMSR----FELRTFLNALITQEVSFAPIVPPIILNLVKNPI--VEEFDLSKLKL 305 (546)
T ss_pred EecChHHHHHHHHHHHHHhhcCCEEEEecc----cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCcc--ccccccchhee
Confidence 999999998877778889999999999864 488999999999999999999999999987643 1222333 57
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccC-C--CCCCCCCCCcCcCcCCceEEEEC-CCCcee
Q 004034 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-P--GAWPQKPGSATFPFFGVQPVIVD-EKGVEI 587 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~-~--~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~ 587 (778)
|.++++||++++++++++.+.++ ++++++.||+||++.+..... + +.......++|+|++|++++|+| ++++++
T Consensus 306 ~~i~~~g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~ 383 (546)
T PLN02330 306 QAIMTAAAPLAPELLTAFEAKFP--GVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL 383 (546)
T ss_pred eeEEEcCCcCCHHHHHHHHHHcC--CCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC
Confidence 99999999999999999999885 478999999999986544321 1 11113456899999999999998 478999
Q ss_pred CCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHH
Q 004034 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL 667 (778)
Q Consensus 588 ~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L 667 (778)
|.|+.|||+|+| |.++.||+++++.+...+. .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|
T Consensus 384 p~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l 459 (546)
T PLN02330 384 PKNTPGELCVRS--QCVMQGYYNNKEETDRTID--EDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAIL 459 (546)
T ss_pred CCCCceEEEEec--chhhhhhccCccchhhhcc--CCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHH
Confidence 999999999999 8999999999988776643 378999999999999999999999999999999999999999999
Q ss_pred hcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 668 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 668 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
.+||.|.+++|++++++..++.++++|++.++...+ .++|+++++++|+.|++|+.|+++++||+|++||++|++|+
T Consensus 460 ~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~ 536 (546)
T PLN02330 460 LTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKES---EEDILNFVAANVAHYKKVRVVQFVDSIPKSLSGKIMRRLLK 536 (546)
T ss_pred HhCCchheEEEEeccccccCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCceEEEEeccCCCCCCcceeHHHHH
Confidence 999999999999999888889999999987654433 46799999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 004034 748 KIASRQ 753 (778)
Q Consensus 748 ~~~~~~ 753 (778)
+++...
T Consensus 537 ~~~~~~ 542 (546)
T PLN02330 537 EKMLSI 542 (546)
T ss_pred HHHHhh
Confidence 998643
|
|
| >TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=593.74 Aligned_cols=504 Identities=24% Similarity=0.313 Sum_probs=415.7
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
++++|+++++ ++|+++|+.+. .+++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 2 ~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G 74 (515)
T TIGR03098 2 LHHLLEDAAA-RLPDATALVHH------DRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMFGAALAG 74 (515)
T ss_pred HHHHHHHHHH-HCCCCeEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 5678888888 89999999986 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++..++++++++++++++... ..+......+ +.+..++.++.... ....
T Consensus 75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~ 136 (515)
T TIGR03098 75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERL---------DLLHPALPGC----HDLRTLILVGEPAH-----ASEG 136 (515)
T ss_pred EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchh---------hhhHhhhhcc----cccceEEEecCccc-----ccCC
Confidence 9999999999999999999999999999976532 1111111221 23444554443221 0000
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
......|.+....... .+......+++++|+|||||||.||||+++|++++.+ .......+++.++|++++..|++|+
T Consensus 137 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~d~~l~~~p~~~~ 214 (515)
T TIGR03098 137 GGESPSWPKLLALGDA-DPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAG-AQSVATYLENRPDDRLLAVLPLSFD 214 (515)
T ss_pred ccccccHHHhhccccc-cccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHH-HHHHHHHhCCCcccEEEEECchhhH
Confidence 1122334444332221 1223345688999999999999999999999996544 4444456788899999999999999
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.++ ..++.+|..|+++++.+. .+++.+++.++++++|++.++|+++..|.+... ...+++++|.++++|+++
T Consensus 215 ~~~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---~~~~~~~l~~~~~~g~~l 286 (515)
T TIGR03098 215 YGF-NQLTTAFYVGATVVLHDY----LLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW---PESAAPSLRYLTNSGGAM 286 (515)
T ss_pred hHH-HHHHHHHHcCCEEEEcCC----CCHHHHHHHHHHcCCceEecChHHHHHHHhccc---CCCCccceEEEEecCCcC
Confidence 885 567899999999998754 489999999999999999999999999987532 123678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCC
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~ 601 (778)
++++++.+.+.++ ++.+++.||+||++....... .....+++++|+|+++++++|+|+++++++.|+.|||+++|
T Consensus 287 ~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g-- 361 (515)
T TIGR03098 287 PRATLSRLRSFLP--NARLFLMYGLTEAFRSTYLPP-EEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRG-- 361 (515)
T ss_pred CHHHHHHHHHHCC--CCeEeeeeccccccceEeccc-ccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcC--
Confidence 9999999999885 378999999999986543322 11234678999999999999999999999999999999999
Q ss_pred CcccccccCChhhhhhhccCC---------CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 602 PGAFRTLYGDHERYETTYFKP---------FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~---------~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
+.++.|||++++.+...+... .++||+|||+|++++||++++.||.||+||++|.+|+|.|||++|.+||.
T Consensus 362 ~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~ 441 (515)
T TIGR03098 362 ALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGL 441 (515)
T ss_pred chhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCC
Confidence 889999999987766554321 13489999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
|.+++|++++++..++.++++++...+...+ .++|+++++++|+++++|..++++++||+|.+||++|++|++
T Consensus 442 v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~ 514 (515)
T TIGR03098 442 VAEAVAFGVPDPTLGQAIVLVVTPPGGEELD---RAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAA 514 (515)
T ss_pred eeEEEEEeccCcccCceEEEEEEeCCCCCCC---HHHHHHHHHhhCccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence 9999999999988899999999876544333 578999999999999999999999999999999999999974
|
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. |
| >PRK12476 putative fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-66 Score=611.86 Aligned_cols=508 Identities=20% Similarity=0.223 Sum_probs=389.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCC---CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
.+.++|+++++ ++|+++|+++.+.. .+..+.+||+||.++++++|++|++. +++||+|+|+++|++++++++|||
T Consensus 35 ~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~-~~~gd~V~l~~~n~~e~~~~~lA~ 112 (612)
T PRK12476 35 TLISLIERNIA-NVGDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQV-AGPGDRVAILAPQGIDYVAGFFAA 112 (612)
T ss_pred cHHHHHHHHHH-hCCCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHHh-cCCCCEEEEECCCChhHHHHHHHH
Confidence 36678898888 89999999985321 12346899999999999999999987 999999999999999999999999
Q ss_pred HHhCCEEEeC-CCCCC--HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 278 ARIGAVHSVV-FAGFS--SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 278 l~~Gav~vpl-~p~~~--~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
+++|++++|+ ++.++ .+++.+++++++++++|+++... ..+.+....+. ......++.++....
T Consensus 113 ~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~~--~~~~~~~i~~~~~~~-- 179 (612)
T PRK12476 113 IKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAA---------EAVEGFLRNLP--RLRRPRVIAIDAIPD-- 179 (612)
T ss_pred HHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHH---------HHHHHHHhhcc--cccCceEEEeccccc--
Confidence 9999999999 67777 88999999999999999976532 12222111110 001123333322100
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC-CCCCcEEE
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-YKPSDVYW 433 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-~~~~d~~l 433 (778)
............++++++|+|||||||+||||+++|++++.+.. .....++ +.++++++
T Consensus 180 -------------------~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~~l 239 (612)
T PRK12476 180 -------------------SAGESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLV-QMILSIDLLDRNTHGV 239 (612)
T ss_pred -------------------cccccccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHH-HHHHHhccCCCCceEE
Confidence 00001111234678999999999999999999999999654433 3344566 78889999
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHH--HhCccEEEecHHHHHHHHhcCC--cccccCCCC
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVD--KYKVTIFYTAPTLVRSLMRDGN--EYVTRYSRK 509 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~--~~~vT~l~~~Ps~l~~L~~~~~--~~~~~~~l~ 509 (778)
+.+|++|..|+.. ++.+++.|+++++........++..+++.++ ++++|+++.+|+++..++.... ......+++
T Consensus 240 ~~~Pl~h~~g~~~-~~~~~~~gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~ 318 (612)
T PRK12476 240 SWLPLYHDMGLSM-IGFPAVYGGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLS 318 (612)
T ss_pred EeCCcccccchHH-HHHHHhcCCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchh
Confidence 9999999998644 4445556777666643222237899999995 5899999999998887776421 111234688
Q ss_pred ceeEEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCC-------------------------
Q 004034 510 SLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW------------------------- 561 (778)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~------------------------- 561 (778)
+|| +++||+++++++++++.+.++. ....+++.||+||++..++...+...
T Consensus 319 ~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 397 (612)
T PRK12476 319 NVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPN 397 (612)
T ss_pred Hhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCC
Confidence 999 9999999999999999998732 23459999999998765433211100
Q ss_pred CCCCCCcCcCcCCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC----------------CCC
Q 004034 562 PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----------------PFP 624 (778)
Q Consensus 562 ~~~~~~~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~----------------~~~ 624 (778)
....+++|+|++|++++|+|++ |++++.|+.|||+|+| |.++.|||++++.+.+.|.. ..+
T Consensus 398 ~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~ 475 (612)
T PRK12476 398 AVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHG--DNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDG 475 (612)
T ss_pred cceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcC--CcccccccCChHHHHHHHhhhhccccccccccccccCCC
Confidence 0123578999999999999987 9999999999999999 89999999999988887742 123
Q ss_pred CeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhc-CCccce--EEEEEEecCCCCeEEEEEEEEcCCCC
Q 004034 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS-HPQCAE--AAVVGVEHEVKGQGIYAFVTLVEGVP 701 (778)
Q Consensus 625 G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~-~p~V~e--a~Vv~~~~~~~~~~lva~Vv~~~~~~ 701 (778)
+||+|||+|+++ ||+|+|+||+||+||++|+||+|.|||++|.+ ||.|.+ ++|++++++. ++.++++|+.+++..
T Consensus 476 ~w~~TGDlg~~~-dG~l~i~GR~~d~I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~ 553 (612)
T PRK12476 476 TWLRTGDLGVYL-DGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTS 553 (612)
T ss_pred CeeeccccceeE-CCEEEEEeccCcEEEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcc
Confidence 599999999984 99999999999999999999999999999985 899999 7778888776 788999999876532
Q ss_pred -CCHHHHHHHHHHHHhhcC-CCcc-ccEEEECC--CCCCCCCCcccHHHHHHHHhc
Q 004034 702 -YSEELRKSLVLAVRKQIG-AFAA-PDKIHWAP--GLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 702 -~~~~l~~~l~~~l~~~Lp-~~~~-P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.+ .++|.+++++++. .|++ |..+++++ +||+|++|||+|++|++++.+
T Consensus 554 ~~~---~~~l~~~~~~~l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~~ 606 (612)
T PRK12476 554 RAD---PAPAIDAIRAAVSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYLD 606 (612)
T ss_pred ccc---HHHHHHHHHHHHHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHHc
Confidence 22 3456666666665 3676 67888886 699999999999999998753
|
|
| >PRK07786 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-65 Score=596.66 Aligned_cols=510 Identities=24% Similarity=0.288 Sum_probs=418.8
Q ss_pred CcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHH
Q 004034 197 GITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLA 276 (778)
Q Consensus 197 ~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA 276 (778)
.+.|.. +.|+++++ .+|+++|+++. ++.+||.||.++++++|.+|.+.|+++||+|+|+++|+++++++++|
T Consensus 15 ~~~n~~-~~~~~~a~-~~~~~~a~~~~------~~~~ty~~l~~~~~~~a~~L~~~g~~~g~~V~i~~~~~~~~~~~~~a 86 (542)
T PRK07786 15 RRQNWV-NQLARHAL-MQPDAPALRFL------GNTTTWRELDDRVAALAGALSRRGVGFGDRVLILMLNRTEFVESVLA 86 (542)
T ss_pred cccCHH-HHHHHHHH-HCCCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHH
Confidence 455654 55777787 89999999987 57899999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccc
Q 004034 277 CARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRE 356 (778)
Q Consensus 277 ~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (778)
|+++|++++|+++.++.+++..++++++++++++++... ..+..... ..+.++.++...+...
T Consensus 87 ~~~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~---- 149 (542)
T PRK07786 87 ANMLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALA---------PVATAVRD----IVPLLSTVVVAGGSSD---- 149 (542)
T ss_pred HHHcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchH---------HHHHHhhh----ccCccceEEEecCCCc----
Confidence 999999999999999999999999999999999986532 11111111 1133444554432110
Q ss_pred cccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCC-CCCcEEEEe
Q 004034 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY-KPSDVYWCT 435 (778)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~-~~~d~~l~~ 435 (778)
.....+.+.+.......+......+++++|+|||||||.||||+++|++++... ......+++ ..++++++.
T Consensus 150 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 222 (542)
T PRK07786 150 ------DSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQA-MTCLRTNGADINSDVGFVG 222 (542)
T ss_pred ------ccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHH-HHHHHhcCCCCCCceEEEe
Confidence 011223333322222223334567889999999999999999999999965444 334445666 568899999
Q ss_pred CCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEE
Q 004034 436 ADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515 (778)
Q Consensus 436 ~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~ 515 (778)
.|+.|.+|+ ..++.++..|+++++.+.. .+++..+++.++++++|.++++|++++.|....... . ...++|.++
T Consensus 223 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~--~-~~~~lr~i~ 296 (542)
T PRK07786 223 VPLFHIAGI-GSMLPGLLLGAPTVIYPLG--AFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQAR--P-RDLALRVLS 296 (542)
T ss_pred cchHHHHHH-HHHHHHHHccCEEEEccCC--CcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccC--c-cCcceEEEE
Confidence 999998874 6788999999999997532 248999999999999999999999999998765421 1 223799999
Q ss_pred EecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEE
Q 004034 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (778)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL 595 (778)
+||+++++++++++.+.++ +.++++.||+||++.+.+..........++++|+|++++.++|+|+++++++.|+.|||
T Consensus 297 ~gg~~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel 374 (542)
T PRK07786 297 WGAAPASDTLLRQMAATFP--EAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEI 374 (542)
T ss_pred ECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEE
Confidence 9999999999999999885 47899999999998764432222222456789999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
+++| +.+++||+++++.+...|. +|||+|||++++++||+++++||.||+||++|++|++.|||++|.+||.|.+
T Consensus 375 ~v~g--~~~~~gy~~~~~~~~~~f~---~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~ 449 (542)
T PRK07786 375 VYRA--PTLMSGYWNNPEATAEAFA---GGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVE 449 (542)
T ss_pred EEEC--hhhhhhhcCCHHHHHHHhh---CCcccccceEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccE
Confidence 9999 8999999999988877653 6899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
++|++++++..++.++++|+....... ...++++++++++++.|++|..++++++||+|++||++|++|++++.+.
T Consensus 450 ~~v~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~ 525 (542)
T PRK07786 450 VAVIGRADEKWGEVPVAVAAVRNDDAA--LTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLKTELRERYGAC 525 (542)
T ss_pred EEEEeccCcccCceEEEEEEECCCCCC--CCHHHHHHHHHhhccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhh
Confidence 999999887778889999998754321 1257899999999999999999999999999999999999999998754
|
|
| >PRK10946 entE enterobactin synthase subunit E; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=595.35 Aligned_cols=505 Identities=23% Similarity=0.330 Sum_probs=411.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|++++ + ||++|+++. ++++||+||+++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 26 ~~~~~~~~~a--~-p~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~g~~~g~~V~v~~~n~~~~~~~~la~~~~ 96 (536)
T PRK10946 26 PLTDILTRHA--A-SDAIAVICG------ERQFSYRELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKL 96 (536)
T ss_pred cHHHHHHHhh--C-CCCeEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCChHHHHHHHHHHHHc
Confidence 4778898876 3 999999976 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++++.+..+..++..++++++++++++++.... +.......+....+ +.+..++..+...
T Consensus 97 G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~~~~~~l~~~~----~~~~~~~~~~~~~--------- 159 (536)
T PRK10946 97 GVAPVNALFSHQRSELNAYASQIEPALLIADRQHAL----FSDDDFLNTLVAEH----SSLRVVLLLNDDG--------- 159 (536)
T ss_pred CeEEecCCccccHHHHHHHHhhcCCCEEEEeccccc----cchHHHHHHHHhhC----CCceEEEEecCCC---------
Confidence 998887777778889999999999999998765321 00011111111111 3333333322211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+.+.+.......+.....++++++|+|||||||.||||+++|++++.+ .......+++.++|++++..|++|
T Consensus 160 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~-~~~~~~~~~~~~~~~~l~~~p~~h 234 (536)
T PRK10946 160 ----EHSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYS-VRRSVEICGFTPQTRYLCALPAAH 234 (536)
T ss_pred ----CccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHH-HHHHHHhcCCCCCceEEEecCccc
Confidence 111222222222222233456799999999999999999999999996554 444556788999999999999999
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.+++.. .++.+|..|+++++.+. +++..++++++++++|++.++|++++.|++..........+++||.+++||+
T Consensus 235 ~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~ 310 (536)
T PRK10946 235 NYPMSSPGALGVFLAGGTVVLAPD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGA 310 (536)
T ss_pred cccchhhhHHHHhhcCcEEEECCC----CCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCC
Confidence 877543 57888999999998654 4788999999999999999999999999876322222346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++.+++.+.++ +++++.||+||++.... ..........+++|+|+ +++.++|+|+++++++.|+.|||+|+
T Consensus 311 ~l~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~ 386 (536)
T PRK10946 311 RLSETLARRIPAELG---CQLQQVFGMAEGLVNYT-RLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTR 386 (536)
T ss_pred CCCHHHHHHHHHhcC---CeEEEeecccccceeee-cCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEe
Confidence 999999999988886 78999999999764332 21111123467899999 79999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| +.++.|||++++.+...|.. +|||+|||++++|+||+++++||.||+||++|++|+|.|||++|.+||+|.+++|
T Consensus 387 g--~~~~~GY~~~~~~t~~~~~~--d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v 462 (536)
T PRK10946 387 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAAL 462 (536)
T ss_pred c--CccchhhcCCcccchhhccc--CCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999877766543 6899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
++++++..++.++++|+++++. + .++|++++++. +++|++|..+++++++|+|++||++|++|++++...
T Consensus 463 ~~~~~~~~g~~~~a~vv~~~~~--~---~~~l~~~~~~~~l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~~ 533 (536)
T PRK10946 463 VSMEDELMGEKSCAFLVVKEPL--K---AVQLRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 533 (536)
T ss_pred EcCCCcccCceEEEEEEeCCCC--C---HHHHHHHHHhCCccccccCcEEEEeccCCCCCCCcccHHHHHHHHHhh
Confidence 9999888888999999987652 2 46888899886 999999999999999999999999999999987654
|
|
| >PRK09088 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-66 Score=589.78 Aligned_cols=480 Identities=22% Similarity=0.343 Sum_probs=398.3
Q ss_pred HhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeC
Q 004034 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (778)
Q Consensus 208 ~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl 287 (778)
.+++ .+||++|+.... .++.+||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 3 ~~a~-~~p~~~a~~~~~----~~~~~ty~~l~~~v~~~a~~l~~~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~ 77 (488)
T PRK09088 3 FHAR-LQPQRLAAVDLA----LGRRWTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPL 77 (488)
T ss_pred hhhh-hCCCceEEEecC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEee
Confidence 4555 799999998631 15789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccc
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (778)
++.++.+++.+++++++++++|+++....... ..+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~-----------------------~~~~~~~~----------------- 117 (488)
T PRK09088 78 NWRLSASELDALLQDAEPRLLLGDDAVAAGRT-----------------------DVEDLAAF----------------- 117 (488)
T ss_pred CccCCHHHHHHHHHhCCCCEEEEcchhhcccc-----------------------cccchhhh-----------------
Confidence 99999999999999999999999765321000 00000000
Q ss_pred hhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHH
Q 004034 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV 447 (778)
Q Consensus 368 ~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~ 447 (778)
.+...... ........++++++++|||||||.||+|+++|++++ .....+...+.+.++|++++.+|+.|.+++...
T Consensus 118 -~~~~~~~~-~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~ 194 (488)
T PRK09088 118 -IASADALE-PADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQ-QTAHNFGVLGRVDAHSSFLCDAPMFHIIGLITS 194 (488)
T ss_pred -hhhccccc-cccCCCCCCCCceEEEeCCCCCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCcEEEEecchHHHHHHHHH
Confidence 00000000 011123456889999999999999999999999954 444445556678889999999999999998778
Q ss_pred HHHHHhcCcEEEEEcCCCCCCChhHHHHHHHH--hCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHH
Q 004034 448 TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDK--YKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (778)
Q Consensus 448 i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~--~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 525 (778)
++.++..|+++++.++ .++..++..+.+ +++|+++++|++++.|.+... .....+++||.+++||++++.+.
T Consensus 195 ~~~~l~~g~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~gG~~~~~~~ 268 (488)
T PRK09088 195 VRPVLAVGGSILVSNG----FEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPG--FDAAALRHLTALFTGGAPHAAED 268 (488)
T ss_pred HHHHHhcCCEEEEcCC----CCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcC--cCccccccceEEEecCCCCCHHH
Confidence 8889999999998754 377888888864 889999999999999887643 12345789999999999999998
Q ss_pred HHHHHHHhCCCCcceecccccccccceecccCC-CCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcc
Q 004034 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGA 604 (778)
Q Consensus 526 ~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v 604 (778)
++.+.+. + +++++.||+||++.+...... .....+++++|+|+++++++|+|+++++++.|+.|||+|+| |.+
T Consensus 269 ~~~~~~~-g---~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~ 342 (488)
T PRK09088 269 ILGWLDD-G---IPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRG--PNL 342 (488)
T ss_pred HHHHHHh-C---CceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEEC--Ccc
Confidence 8877654 3 789999999999875432211 11123568899999999999999999999999999999999 899
Q ss_pred cccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecC
Q 004034 605 FRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHE 684 (778)
Q Consensus 605 ~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~ 684 (778)
+.||+++++.+...+.. +|||+|||+|++|+||+++|+||.||+||++|++|+|.|||++|.+||.|.+++|++++++
T Consensus 343 ~~gY~~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~ 420 (488)
T PRK09088 343 SPGYWRRPQATARAFTG--DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADA 420 (488)
T ss_pred chhhcCChhhhhhhhcC--CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCc
Confidence 99999999888766543 6899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 685 VKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 685 ~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
..++..+++|+++++...+ .+++++++++++++|++|..|+++++||+|++||++|++|++++.+
T Consensus 421 ~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~ 485 (488)
T PRK09088 421 QWGEVGYLAIVPADGAPLD---LERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA 485 (488)
T ss_pred cCCceeEEEEEECCCCCCC---HHHHHHHHHhhCcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence 7788889999987654433 5789999999999999999999999999999999999999998864
|
|
| >PLN03102 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=599.16 Aligned_cols=511 Identities=21% Similarity=0.301 Sum_probs=396.8
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ .+||++|+++. ++++||+||+++++++|+.|.++|+++||+|+|+++|++++++++|||+++|
T Consensus 16 ~~~~l~~~~~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~a~~L~~~Gl~~gd~Vai~~~n~~e~~~~~la~~~~G 88 (579)
T PLN03102 16 PITFLKRASE-CYPNRTSIIYG------KTRFTWPQTYDRCCRLAASLISLNITKNDVVSVLAPNTPAMYEMHFAVPMAG 88 (579)
T ss_pred HHHHHHHHHH-hCCCCeEEEEC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 6778999998 89999999986 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhh--cCCCccEEEEEccCCcccccccc
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK--SGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
++++|++|.++.+++.++|+.+++++||++++.. ..+.+....+.. ....+ .++.++..... ...
T Consensus 89 ~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~ 155 (579)
T PLN03102 89 AVLNPINTRLDATSIAAILRHAKPKILFVDRSFE---------PLAREVLHLLSSEDSNLNL-PVIFIHEIDFP---KRP 155 (579)
T ss_pred cEEeeccccCCHHHHHHHHhccCCeEEEEChhhH---------HHHHHHHhhccccccccCc-eEEEecccccc---cCC
Confidence 9999999999999999999999999999976542 222222222210 00112 23333322100 000
Q ss_pred CCCCcccchhhccCCCCCCC-----CccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEE
Q 004034 360 WQDGRDIWWQDVVPKYPTKC-----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~ 434 (778)
......|.+......... ......++++++|+|||||||.||||+++|++++.... .....+.+...+++++
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~-~~~~~~~~~~~~~~l~ 232 (579)
T PLN03102 156 --SSEELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTL-SAIIGWEMGTCPVYLW 232 (579)
T ss_pred --cccccCHHHHHhccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHH-HHHhhcCCCCCCeEEe
Confidence 001223333332211110 11234578999999999999999999999999544332 2233455667789999
Q ss_pred eCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEE
Q 004034 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (778)
Q Consensus 435 ~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v 514 (778)
.+|++|..++ ...+.++..|+++++... +++..+++.|+++++|++.++|+++..|.+.... .....++++.+
T Consensus 233 ~~pl~h~~g~-~~~~~~~~~g~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~ 305 (579)
T PLN03102 233 TLPMFHCNGW-TFTWGTAARGGTSVCMRH----VTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSL--DLSPRSGPVHV 305 (579)
T ss_pred cCChhhhcch-hHHHHHHHhcCcEEeecc----CChHHHHHHHHHcCCeEEEeChHHHHHHHhCccc--ccCCcccceEE
Confidence 9999998874 455678889999988764 3678899999999999999999999999876431 22345678899
Q ss_pred EEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccC-CC-------C----CCCCCCCcCcCcCCceEEEECC
Q 004034 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG-------A----WPQKPGSATFPFFGVQPVIVDE 582 (778)
Q Consensus 515 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~-~~-------~----~~~~~~~~G~p~~g~~~~Ivd~ 582 (778)
++||+++++.+.+++.+ +| +++++.||+||+++..+... .. . .....+..+.+++++ .+.|+
T Consensus 306 ~~gg~~~~~~~~~~~~~-~g---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v--~i~~~ 379 (579)
T PLN03102 306 LTGGSPPPAALVKKVQR-LG---FQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADV--DVKNK 379 (579)
T ss_pred EECCCCCCHHHHHHHHH-cC---CeEEeecCccccCccccccccccccccCCcccccccccCCCcccccccce--EEecc
Confidence 99999999999988865 45 68999999999986433211 00 0 001223344455544 45563
Q ss_pred -CCceeCC--CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeC
Q 004034 583 -KGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659 (778)
Q Consensus 583 -~g~~~~~--g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~ 659 (778)
.+++++. ++.|||+|+| |++++|||++++.+...|. +|||+|||+|++|+||+++|+||.||+||++|++|+
T Consensus 380 ~~~~~v~~~~~~~GEl~v~g--~~~~~GY~~~~~~t~~~f~---~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~ 454 (579)
T PLN03102 380 ETQESVPRDGKTMGEIVIKG--SSIMKGYLKNPKATSEAFK---HGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENIS 454 (579)
T ss_pred ccccccCCCCCCceEEEEEC--cchhhhhcCChhhhHhhhc---cCceecCceEEEcCCCeEEEEeccCcEEEECCEEEC
Confidence 5667764 4689999999 8999999999988877653 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCH-------HHHHHHHHHHHhhcCCCccccEEEECCC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE-------ELRKSLVLAVRKQIGAFAAPDKIHWAPG 732 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~-------~l~~~l~~~l~~~Lp~~~~P~~i~~v~~ 732 (778)
|.|||++|.+||.|.+++|++++++..++.++|+|++.++....+ ....+++++++++||.|++|..|+++++
T Consensus 455 p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~i~~~~~ 534 (579)
T PLN03102 455 SVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRKVVFLQE 534 (579)
T ss_pred HHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccccccccccccccHHHHHHHHHhhcccccCCeEEEEccc
Confidence 999999999999999999999999888899999999876543211 0146899999999999999999999999
Q ss_pred CCCCCCCcccHHHHHHHHhcc
Q 004034 733 LPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 733 lP~T~sGKi~R~~L~~~~~~~ 753 (778)
||+|++|||+|++|++++.+.
T Consensus 535 ~P~t~~gKi~r~~L~~~~~~~ 555 (579)
T PLN03102 535 LPKNGNGKILKPKLRDIAKGL 555 (579)
T ss_pred CCCCCcccccHHHHHHHHHHh
Confidence 999999999999999998764
|
|
| >PRK13388 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=593.23 Aligned_cols=488 Identities=23% Similarity=0.296 Sum_probs=394.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv-~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|.++ ..|+++|+++. +.++||.||.++++++|..|.++|+ ++||+|+|+++|++++++++|||++
T Consensus 4 ~~~~~l~~~---~~p~~~Al~~~------~~~lTy~el~~~~~~la~~L~~~g~~~~~~~V~i~~~n~~~~v~~~lA~~~ 74 (540)
T PRK13388 4 TIAQLLRDR---AGDDTIAVRYG------DRTWTWREVLAEAAARAAALIALADPDRPLHVGVLLGNTPEMLFWLAAAAL 74 (540)
T ss_pred hHHHHHHhh---ccCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCcHHHHHHHHHHh
Confidence 466777664 47999999876 5789999999999999999999999 8999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++..++++++++++|++++.. ..+ ..+. .+.++ ++.++..
T Consensus 75 ~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~----~~~~--~~~~~-~i~~~~~--------- 129 (540)
T PRK13388 75 GGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHR---------PLL----DGLD--LPGVR-VLDVDTP--------- 129 (540)
T ss_pred CCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhh---------HHH----Hhhc--ccCce-EEEccch---------
Confidence 999999999999999999999999999999976532 111 1110 01222 2322211
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.|.+.+.......+.....++++++|+|||||||+||||+++|++++ .........+++.++|+++..+|++
T Consensus 130 -------~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~-~~~~~~~~~~~~~~~d~~l~~~p~~ 201 (540)
T PRK13388 130 -------AYAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLA-FAGRALTERFGLTRDDVCYVSMPLF 201 (540)
T ss_pred -------hhhhhhccccCcCCCCCCCCCCeEEEEECCCCCCCCCEEEecHHHHH-HHHHHHHHHhCCCCCCEEEEeeCch
Confidence 11122221111122233567999999999999999999999999954 4455556678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++...++.+|..|+++++.+. +++..+++.++++++|++..+|+.+..++..... ......+++.+ + |+
T Consensus 202 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~--~~~~~~~l~~~-~-G~ 273 (540)
T PRK13388 202 HSNAVMAGWAPAVASGAAVALPAK----FSASGFLDDVRRYGATYFNYVGKPLAYILATPER--PDDADNPLRVA-F-GN 273 (540)
T ss_pred hhcchHHHHHHHHHcCcEEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCC--ccccccceEEE-E-CC
Confidence 998876666678999999988643 4789999999999999999999999998876432 11223466643 3 66
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEE-----------EECCCCcee-
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV-----------IVDEKGVEI- 587 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~-----------Ivd~~g~~~- 587 (778)
+++++..+++.+.++ +++++.||+||++.++... . ...++++|+|++|++++ ++|++|+++
T Consensus 274 ~~~~~~~~~~~~~~~---~~l~~~YG~tE~~~~~~~~-~---~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~ 346 (540)
T PRK13388 274 EASPRDIAEFSRRFG---CQVEDGYGSSEGAVIVVRE-P---GTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLN 346 (540)
T ss_pred CCCHHHHHHHHHHhC---CceecccccccccceeecC-C---CCCCCCCCCCCCCcEEEcCCCCccccceeccCcccccc
Confidence 778888888888886 6899999999998765432 1 13467899999998753 455666665
Q ss_pred CCCeeeEEEEe-cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHH
Q 004034 588 EGECSGYLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESA 666 (778)
Q Consensus 588 ~~g~~GEL~v~-g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~ 666 (778)
+.+..|||+++ | ++++.||+++++.+.+.+. +|||+|||+|++|+||+++++||.||+||++|++|+|.|||++
T Consensus 347 ~~~~~GEl~v~~g--~~~~~gY~~~~~~t~~~~~---~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~ 421 (540)
T PRK13388 347 ADEAIGELVNTAG--AGFFEGYYNNPEATAERMR---HGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERI 421 (540)
T ss_pred CCCcceEEEEecC--CcccccccCChHHHHHHhh---cCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHH
Confidence 34678999998 8 8999999999998877652 6899999999999999999999999999999999999999999
Q ss_pred HhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh--cCCCccccEEEECCCCCCCCCCcccHH
Q 004034 667 LVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ--IGAFAAPDKIHWAPGLPKTRSGKIMRR 744 (778)
Q Consensus 667 L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~--Lp~~~~P~~i~~v~~lP~T~sGKi~R~ 744 (778)
|.+||+|.+|+|++++++..|+.+++++++.++...+ .++++++++.+ |++|++|..++++++||+|++||++|+
T Consensus 422 l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~ 498 (540)
T PRK13388 422 LLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFD---PDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKR 498 (540)
T ss_pred HHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCC---HHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHH
Confidence 9999999999999999887888899999887665443 45778888764 999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 004034 745 ILRKIASRQ 753 (778)
Q Consensus 745 ~L~~~~~~~ 753 (778)
+|+++....
T Consensus 499 ~L~~~~~~~ 507 (540)
T PRK13388 499 ELIAQGWAT 507 (540)
T ss_pred hHHHhccCC
Confidence 999987544
|
|
| >PRK12492 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-65 Score=597.83 Aligned_cols=510 Identities=22% Similarity=0.331 Sum_probs=407.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
.+.++|+++++ ++|+++|+++. .+++||.||.++++++|+.|.+. |+++||+|+|+++|++++++++|||++
T Consensus 25 ~~~~~l~~~~~-~~p~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~~gi~~gd~V~i~~~n~~e~~~~~la~~~ 97 (562)
T PRK12492 25 SVVEVFERSCK-KFADRPAFSNL------GVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALR 97 (562)
T ss_pred cHHHHHHHHHH-hCCCCeeEecC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47788999998 89999999865 57899999999999999999984 999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEc--c-CCcc---
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYE--N-QSAM--- 353 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~--~-~~~~--- 353 (778)
+|++++|++|.++.+++.+++++++++++++++.... .+...... .....++... + ....
T Consensus 98 ~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 163 (562)
T PRK12492 98 AGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGK---------LVQEVLPD-----TGIEYLIEAKMGDLLPAAKGW 163 (562)
T ss_pred cCeEEeccCccCCHHHHHHHHhccCceEEEeccccch---------HHHHhhhc-----cCceEEEeechhhccccccch
Confidence 9999999999999999999999999999999765421 11111110 0111111100 0 0000
Q ss_pred ---------ccccccCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh
Q 004034 354 ---------TRENTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (778)
Q Consensus 354 ---------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (778)
..............|.+.+.... ..........+++++|+|||||||.||||+++|++++.+..... ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~-~~ 242 (562)
T PRK12492 164 LVNTVVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVR-AC 242 (562)
T ss_pred hcccccccccccccccCCcccccHHHHHhccCCCCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHH-HH
Confidence 00000000011223333322211 11122345678999999999999999999999999654433222 22
Q ss_pred hC---------CCC-CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHH
Q 004034 424 FD---------YKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR 493 (778)
Q Consensus 424 ~~---------~~~-~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~ 493 (778)
++ +.. .++++...|+.|..++.+.++..+..|+++++.... .++..+++.++++++|++..+|++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~ 319 (562)
T PRK12492 243 LSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNP---RDIPGFIKELGKWRFSALLGLNTLFV 319 (562)
T ss_pred HhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCC---cCHHHHHHHHHHhCCceeeCcHHHHH
Confidence 22 223 357788999999998777777788899988776532 37889999999999999999999999
Q ss_pred HHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcC
Q 004034 494 SLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573 (778)
Q Consensus 494 ~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~ 573 (778)
.|++... ....+++++|.+++||+++++++.++|.+.++ +++++.||+||++.+++...... ...++++|+|++
T Consensus 320 ~l~~~~~--~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~p~~ 393 (562)
T PRK12492 320 ALMDHPG--FKDLDFSALKLTNSGGTALVKATAERWEQLTG---CTIVEGYGLTETSPVASTNPYGE-LARLGTVGIPVP 393 (562)
T ss_pred HHHhCcC--cccccccceeEEEeccccCCHHHHHHHHHHhC---CceeeccCccccCceeeecCCcc-cccCCccceecC
Confidence 9987653 23456789999999999999999999998876 78999999999987655433221 235678999999
Q ss_pred CceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEe
Q 004034 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 653 (778)
Q Consensus 574 g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki 653 (778)
+++++|+|+++++++.|+.|||+|+| +.+++|||++++.+...+. .+|||+|||+|+++++|+++|.||.||+||+
T Consensus 394 ~~~v~ivd~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~--~~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~ 469 (562)
T PRK12492 394 GTALKVIDDDGNELPLGERGELCIKG--PQVMKGYWQQPEATAEALD--AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIV 469 (562)
T ss_pred CCEEEEECCCCCCCCCCCceEEEEeC--CccccccccCchhhhhccc--CCCceecCcEEEECCCCeEEEecccCCeEEE
Confidence 99999999999999999999999999 8999999999998877653 3689999999999999999999999999999
Q ss_pred CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCC
Q 004034 654 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733 (778)
Q Consensus 654 ~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~l 733 (778)
+|++|+|.|||++|.+||.|.+++|++.++...++.++++++..+... + .++|+++++++|+.|++|..|+++++|
T Consensus 470 ~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-~---~~~i~~~~~~~l~~~~~P~~i~~~~~~ 545 (562)
T PRK12492 470 SGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGL-S---VEELKAYCKENFTGYKVPKHIVLRDSL 545 (562)
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCC-C---HHHHHHHHHHhcccccCCcEEEEeccC
Confidence 999999999999999999999999999998878889999998765422 2 478999999999999999999999999
Q ss_pred CCCCCCcccHHHHHHH
Q 004034 734 PKTRSGKIMRRILRKI 749 (778)
Q Consensus 734 P~T~sGKi~R~~L~~~ 749 (778)
|+|.+||++|++|+++
T Consensus 546 P~t~~GK~~r~~L~~~ 561 (562)
T PRK12492 546 PMTPVGKILRRELRDI 561 (562)
T ss_pred CCCCCCceeHHHHHhh
Confidence 9999999999999975
|
|
| >PTZ00342 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=609.02 Aligned_cols=523 Identities=16% Similarity=0.168 Sum_probs=396.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc---CCCCC-----------CEEEEEeCC
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI---GVKKG-----------DAVIIYLPM 266 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~---Gv~~G-----------d~Vai~~~~ 266 (778)
++.++|.++++ ++||++|+++.. .+..++.+||+||.++++++|++|.++ |+++| |+|+|+++|
T Consensus 62 ~l~~~l~~~~~-~~p~~~Al~~~~-~g~~~~~~Ty~el~~~v~~~A~~L~~~~~~Gv~~g~~~~~~~~g~~d~V~i~~~N 139 (746)
T PTZ00342 62 HIMKLLLEKYK-LNNNKIAIVEHS-CGEPQNYITYGNFFKKVLSFSHSLNTYEGKGIPEKKYNEEQNNGKFKLLGLYGSN 139 (746)
T ss_pred hHHHHHHHHHh-hcCCceeEeccC-CCCCceeeeHHHHHHHHHHHHHHHHHHhhcCCCcCccccccccccccEEEEEcCC
Confidence 67899999998 899999998642 111257999999999999999999974 99999 999999999
Q ss_pred ChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEE
Q 004034 267 LMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLT 346 (778)
Q Consensus 267 s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ 346 (778)
++||++++|||+++|++.||+++.++.+++.++|+++++++||++... .+.+.+....+ +.++.+++
T Consensus 140 ~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~---------~~~l~~~~~~~----~~l~~ii~ 206 (746)
T PTZ00342 140 SINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDL---------VEGLLERKNEL----PHLKKLII 206 (746)
T ss_pred CHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHH---------HHHHHHhhccC----CCceEEEE
Confidence 999999999999999999999999999999999999999999985432 12222222222 56677777
Q ss_pred EccCCcccc----------------ccc------------------------cCC-----------------CCcccchh
Q 004034 347 YENQSAMTR----------------ENT------------------------KWQ-----------------DGRDIWWQ 369 (778)
Q Consensus 347 ~~~~~~~~~----------------~~~------------------------~~~-----------------~~~~~~~~ 369 (778)
++....... ... .+. ......|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 286 (746)
T PTZ00342 207 LDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFD 286 (746)
T ss_pred ECCCCcccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHH
Confidence 764211000 000 000 00001112
Q ss_pred hccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh-hCCCCCcEEEEeCCcchhhhhhHHH
Q 004034 370 DVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA-FDYKPSDVYWCTADCGWITGHSYVT 448 (778)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~g~~~~i 448 (778)
+.........+.....++|+|+|+|||||||.||||++||+|++.......... ....+.|++++++|++|+++.. ..
T Consensus 287 ~~~~~~~~~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~-~~ 365 (746)
T PTZ00342 287 DMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERV-IA 365 (746)
T ss_pred HHHhhcccCCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHH-HH
Confidence 211111111223345689999999999999999999999999665543322211 1223568999999999999865 45
Q ss_pred HHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC------ccccc-----------------
Q 004034 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN------EYVTR----------------- 505 (778)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~------~~~~~----------------- 505 (778)
+.+++.|++++++++ ++..+++.|+++++|+++++|.+++.|.+... ....+
T Consensus 366 ~~~l~~G~~i~~~~~-----~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 440 (746)
T PTZ00342 366 YLSFMLGGTINIWSK-----DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGG 440 (746)
T ss_pred HHHHHcCCEEEEeCC-----CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCC
Confidence 678999999999853 68899999999999999999999998875200 00000
Q ss_pred -----------------CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCc
Q 004034 506 -----------------YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568 (778)
Q Consensus 506 -----------------~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~ 568 (778)
...++||.+++||+++++++.++|...+| ++++++||+||+++..+...+. ...++++
T Consensus 441 ~~~~~~~~~~v~~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g---~~i~~gYGlTEt~~~~~~~~~~--~~~~gsv 515 (746)
T PTZ00342 441 FSKFLEGITHISSKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLN---VNYYQGYGLTETTGPIFVQHAD--DNNTESI 515 (746)
T ss_pred cchHHHHHHHHHHHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcC---CCEEEeeccCcccceeeeccCC--CCCcccc
Confidence 01268999999999999999999998887 7899999999998765544332 2467899
Q ss_pred CcCc-CCceEEEEC-CCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEee
Q 004034 569 TFPF-FGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGR 646 (778)
Q Consensus 569 G~p~-~g~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR 646 (778)
|+|+ ++++++|+| +++...+.+..|||+|+| |+++.|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||
T Consensus 516 G~p~~pg~e~ki~d~~~~~~~~~~~~GEl~vrG--p~v~~GY~~~pe~T~~~f~~--dGW~~TGDig~~d~dG~l~i~gR 591 (746)
T PTZ00342 516 GGPISPNTKYKVRTWETYKATDTLPKGELLIKS--DSIFSGYFLEKEQTKNAFTE--DGYFKTGDIVQINKNGSLTFLDR 591 (746)
T ss_pred cCcCCCcEEEEEecccccccCCCCCceEEEEec--CcccccccCChhhhhhhcCc--CCcccCCcEEEECCCCeEEEEcc
Confidence 9998 999999998 343444444579999999 89999999999999988754 78999999999999999999999
Q ss_pred cCCEEEe-CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCC----------------CC---CCH--
Q 004034 647 VDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG----------------VP---YSE-- 704 (778)
Q Consensus 647 ~dd~Iki-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~----------------~~---~~~-- 704 (778)
+||+||+ +|++|+|.|||++|.+||.|.+|+|++.. ....++|+|++... .. ..+
T Consensus 592 ~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~VvG~~---~~~~~~Alvv~d~~~~~~~a~~~~~~~~~~i~~~~~~~~~ 668 (746)
T PTZ00342 592 SKGLVKLSQGEYIETDMLNNLYSQISFINFCVVYGDD---SMDGPLAIISVDKYLLFKCLKDDNMLESTGINEKNYLEKL 668 (746)
T ss_pred CCCeEEeCCCEEEchHHHHHHHhcCCCccEEEEEccC---CccccEEEEECCHHHHHHHHHhcCCccccccCcccHHHHh
Confidence 9999997 59999999999999999999999999852 23469999988641 10 000
Q ss_pred --------HHHHHHHHHHH-----hhcCCCccccEEEECC-CC----CCCCCCcccHHHHHHHHhcccCc
Q 004034 705 --------ELRKSLVLAVR-----KQIGAFAAPDKIHWAP-GL----PKTRSGKIMRRILRKIASRQLDE 756 (778)
Q Consensus 705 --------~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~-~l----P~T~sGKi~R~~L~~~~~~~~~~ 756 (778)
.+.+.+++.+. ..|+.|..+++|.+++ .+ -+|++.|+.|+.+.+.++..+++
T Consensus 669 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~e~i~~~~l~~~~~t~~~~lTpt~KlkR~~v~~~y~~~i~~ 738 (746)
T PTZ00342 669 TDETINNNIYVDYVKGKMLEVYKKTNLNRYNIINDIYLTSKVWDTNNYLTPTFKVKRFYVFKDYAFFIDQ 738 (746)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCCccceeeeeEEEecCCCCCCCccChhhhhhHHHHHHHHHHHHHH
Confidence 11222332332 2599999999999886 33 28999999999999998865543
|
|
| >PRK06710 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=596.66 Aligned_cols=515 Identities=24% Similarity=0.345 Sum_probs=410.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ .+|+++|+++. ++.+||+||++++.++|+.|++.|+++||+|+|+++|++++++++|||+++
T Consensus 25 ~~~~~~~~~a~-~~p~~~a~~~~------~~~~ty~eL~~~~~~la~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (563)
T PRK06710 25 PLHKYVEQMAS-RYPEKKALHFL------GKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLA 97 (563)
T ss_pred cHHHHHHHHHH-HCCCceEEEec------CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHHc
Confidence 57899999988 89999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc---
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN--- 357 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~--- 357 (778)
|++++|++|.++.+++.++++.++++++++++....... ..... .....+++...........
T Consensus 98 G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 163 (563)
T PRK06710 98 GGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVT---------NVQSA-----TKIEHVIVTRIADFLPFPKNLL 163 (563)
T ss_pred CeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhh---------ccchh-----hccceeEEeccccccccccccc
Confidence 999999999999999999999999999999875422110 00000 0111121110000000000
Q ss_pred ------------ccCCCCc-ccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhh
Q 004034 358 ------------TKWQDGR-DIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF 424 (778)
Q Consensus 358 ------------~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~ 424 (778)
....... ...|.................++++++|+|||||||.||||+++|++++.+........+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 243 (563)
T PRK06710 164 YPFVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLY 243 (563)
T ss_pred cchhhcccccccccccccchhhhhhhhhhccccccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhcc
Confidence 0000000 001111111111111111123578999999999999999999999996544433333334
Q ss_pred CCCC-CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccc
Q 004034 425 DYKP-SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (778)
Q Consensus 425 ~~~~-~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~ 503 (778)
+... ++++++..|++|..++...++.+++.|+++++.+. +++..+++.|+++++|++.++|++++.++.... .
T Consensus 244 ~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~ 317 (563)
T PRK06710 244 NCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPK----FDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPL--L 317 (563)
T ss_pred CCCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeEEEcCC----CCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCc--c
Confidence 5444 45889999999998876667788999999999753 488999999999999999999999999987643 2
Q ss_pred ccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-C
Q 004034 504 TRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-E 582 (778)
Q Consensus 504 ~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~ 582 (778)
...++++||.+++||+++++++++++.+.++ +++++.||+||++.+...... .....++++|+|++++.++|+| +
T Consensus 318 ~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~~~~ 393 (563)
T PRK06710 318 KEYDISSIRACISGSAPLPVEVQEKFETVTG---GKLVEGYGLTESSPVTHSNFL-WEKRVPGSIGVPWPDTEAMIMSLE 393 (563)
T ss_pred ccCChhhhhheeeCCCcCCHHHHHHHHHhhC---CCEecccccccCccccccCcc-cccccCCccCCCCCCCeEEEEECC
Confidence 2346689999999999999999999988876 689999999999875442221 1123467899999999999998 5
Q ss_pred CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHH
Q 004034 583 KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAE 662 (778)
Q Consensus 583 ~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~e 662 (778)
++++++.|+.|||+|+| |.+++||+++++.+...+ . +|||+|||++++++||+++++||.||+||++|++|+|.|
T Consensus 394 ~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~-~--~g~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~e 468 (563)
T PRK06710 394 TGEALPPGEIGEIVVKG--PQIMKGYWNKPEETAAVL-Q--DGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPRE 468 (563)
T ss_pred CCccCCCCCceEEEEec--CccchhhhCChHHHhhhc-c--cCcccccceEEEcCCCcEEEeeccccEEEECCEEECHHH
Confidence 78999999999999999 899999999998877654 2 689999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCccc
Q 004034 663 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742 (778)
Q Consensus 663 IE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~ 742 (778)
||++|.+||.|.+++|++++++..++.++++|+..++...+ .++++++++++|+.+++|..|+++++||+|++||++
T Consensus 469 iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~v~~iP~t~~GKi~ 545 (563)
T PRK06710 469 VEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECS---EEELNQFARKYLAAYKVPKVYEFRDELPKTTVGKIL 545 (563)
T ss_pred HHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCC---HHHHHHHHHHhcccccCCcEEEEcccCCCCccchhh
Confidence 99999999999999999999888889999999988765443 568999999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 004034 743 RRILRKIASRQL 754 (778)
Q Consensus 743 R~~L~~~~~~~~ 754 (778)
|+.|+++...+.
T Consensus 546 r~~L~~~~~~~~ 557 (563)
T PRK06710 546 RRVLIEEEKRKN 557 (563)
T ss_pred HHHHHHHHhhcC
Confidence 999999987654
|
|
| >PRK06178 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=592.27 Aligned_cols=522 Identities=23% Similarity=0.316 Sum_probs=416.2
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
.||++...+ +.++|+++++ .+||++|+.+. ++.+||.||+++++++|..|.++|+++||+|+|+++|+++++
T Consensus 26 ~~~~~~~~~-l~~~l~~~a~-~~p~~~al~~~------~~~~Ty~~l~~~~~~la~~L~~~g~~~g~~V~i~~~n~~~~~ 97 (567)
T PRK06178 26 PEYPHGERP-LTEYLRAWAR-ERPQRPAIIFY------GHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFH 97 (567)
T ss_pred CCCCcCccc-HHHHHHHHHH-HCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCcHHH
Confidence 477777664 7788888888 89999999876 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (778)
+++|||+++|++++|++|.++.+++.+++++++++++++++... +.+.+.... ..+..++......
T Consensus 98 ~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~l~~~~~~-----~~~~~i~~~~~~~ 163 (567)
T PRK06178 98 IVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLA---------PVVEQVRAE-----TSLRHVIVTSLAD 163 (567)
T ss_pred HHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchH---------HHHHHhhcc-----CCcceEEEecccc
Confidence 99999999999999999999999999999999999999987642 222222111 1233333222110
Q ss_pred ccccc-cccCCC------CcccchhhccC---CCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Q 004034 352 AMTRE-NTKWQD------GRDIWWQDVVP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (778)
Q Consensus 352 ~~~~~-~~~~~~------~~~~~~~~~l~---~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (778)
..... ...... .....+.+..+ ..+.........++++++|+|||||||.||||+++|++++.+......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~ 243 (567)
T PRK06178 164 VLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYA 243 (567)
T ss_pred ccccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHH
Confidence 00000 000000 00001111111 111111223456899999999999999999999999996655444434
Q ss_pred HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 422 ~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
....+.++|+++..+|++|+.|+...++.+|..|+++++.++ +++..+++.++++++|.+..+|..+..|++...
T Consensus 244 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~----~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~- 318 (567)
T PRK06178 244 VAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLAR----WDAVAFMAAVERYRVTRTVMLVDNAVELMDHPR- 318 (567)
T ss_pred HhccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCC-
Confidence 446778899999999999999877778889999999999864 489999999999999999999999999887643
Q ss_pred ccccCCCCceeEEEE--ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCC--CC---CCCCCCCcCcCcCC
Q 004034 502 YVTRYSRKSLRVLGS--VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GA---WPQKPGSATFPFFG 574 (778)
Q Consensus 502 ~~~~~~l~sLr~v~~--gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~--~~---~~~~~~~~G~p~~g 574 (778)
....++++++.+.. .|+++++++++++.+.+|. ..+.+.||+||++........ .. ....++++|+|++|
T Consensus 319 -~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g 395 (567)
T PRK06178 319 -FAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGS--VLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPG 395 (567)
T ss_pred -CCCCCcchheeeeeccccccCCHHHHHHHHHHhCC--cccccccccccccccceeccccccCccccccCCcccccccCC
Confidence 23446678887654 4699999999999998872 334468999999865432211 00 12346779999999
Q ss_pred ceEEEEC-CCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEe
Q 004034 575 VQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINV 653 (778)
Q Consensus 575 ~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki 653 (778)
++++|+| +++++++.|+.|||+|+| |.++.||+++++.+...+. +|||+|||++++++||+++|+||+||+||+
T Consensus 396 ~~v~v~d~~~~~~~~~g~~Gel~v~g--~~v~~gY~~~~~~~~~~~~---dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~ 470 (567)
T PRK06178 396 TEFKICDFETGELLPLGAEGEIVVRT--PSLLKGYWNKPEATAEALR---DGWLHTGDIGKIDEQGFLHYLGRRKEMLKV 470 (567)
T ss_pred cEEEEEcCCCCCcCCCCCceEEEEEC--CcccccccCChhhhhhccc---CCceeecceEEEecCCeEEEEecccccEEE
Confidence 9999999 579999999999999999 8999999999987776653 689999999999999999999999999999
Q ss_pred CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCC
Q 004034 654 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733 (778)
Q Consensus 654 ~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~l 733 (778)
+|++|+|.|||++|.++|+|.+++|++++++..++.++++|+++++...+ .++|+++++++++.|++|. +++++++
T Consensus 471 ~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~-i~~v~~i 546 (567)
T PRK06178 471 NGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLT---AAALQAWCRENMAVYKVPE-IRIVDAL 546 (567)
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCC---HHHHHHHHHhcCcccCCce-EEEeccC
Confidence 99999999999999999999999999998887788999999987655433 5789999999999999996 8889999
Q ss_pred CCCCCCcccHHHHHHHHhc
Q 004034 734 PKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 734 P~T~sGKi~R~~L~~~~~~ 752 (778)
|+|++||++|+.|++++.+
T Consensus 547 P~t~~GKv~r~~l~~~~~~ 565 (567)
T PRK06178 547 PMTATGKVRKQDLQALAEE 565 (567)
T ss_pred CCCCccceeHHHHHHHHHh
Confidence 9999999999999998864
|
|
| >TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=586.46 Aligned_cols=494 Identities=19% Similarity=0.233 Sum_probs=407.7
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.+.|.++++ .+|+++|+.+. ++++||+||.++++++|+.|++.|+++||+|+|+++|+.++++++|||+++|
T Consensus 2 ~~~~l~~~a~-~~p~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G 74 (502)
T TIGR01734 2 LIEAIQAFAE-TYPQTIAYRYQ------GQELTYQQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSG 74 (502)
T ss_pred HHHHHHHHHH-HCCCceEEEcC------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHhC
Confidence 3467888888 89999999876 6789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.++++..+++.+++++...... .... ++.++...
T Consensus 75 ~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~--------------------~~~~-~~~~~~~~---------- 123 (502)
T TIGR01734 75 HAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDA--------------------VGTQ-IITLSALE---------- 123 (502)
T ss_pred CEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccc--------------------cCCc-eEEchHhh----------
Confidence 9999999999999999999999999999987542110 0011 11111100
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
................++++++|+|||||||.||+|+++|+++... ..+....+++..++++++..|++|.
T Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~~~ 194 (502)
T TIGR01734 124 --------QAETSGGPVSFDHAVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSF-TNWMLADFPLSEGKQFLNQAPFSFD 194 (502)
T ss_pred --------hhhhhcCCccccccCCCCCeEEEEECCCCCCCCCEEEEecHHHHHH-HHHHHHhCCCCCCceEEeecCceec
Confidence 0000000001112345789999999999999999999999996544 4444556788889999999999998
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.+ ++.++.+|..|+++++++.. ...++..+++.+.++++|.+..+|++++.++.... .....+++++.++++|+++
T Consensus 195 ~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~--~~~~~~~~l~~~~~~G~~~ 270 (502)
T TIGR01734 195 LS-VMDLYPCLASGGTLHCLDKD-ITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPN--FNQENYPHLTHFLFCGEEL 270 (502)
T ss_pred hh-HHHHHHHHHCCCEEEEcCHH-HhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccc--cccccCCcccEEEEcCCcC
Confidence 87 56788999999999998653 22478999999999999999999999988776532 2334678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceeccc-CCCC--CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP-LPGA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~-~~~~--~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++++.+.++ ++.+++.||+||++...... .... ......++|+|+++++++|+|+++++++.|+.|||+|+
T Consensus 271 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~ 348 (502)
T TIGR01734 271 PVKTAKALLERFP--KATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIV 348 (502)
T ss_pred CHHHHHHHHHHCC--CcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEc
Confidence 9999999999886 47899999999997644322 1111 12334679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCC-CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKP-FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~-~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
| |.++.||+++++.+...++.. ..+||+|||+|++|++ +++++||.+|+||++|++|+|.|||++|.+||.|.+|+
T Consensus 349 g--~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~ 425 (502)
T TIGR01734 349 G--PSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAV 425 (502)
T ss_pred c--ccccccccCCcccchHhheeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEE
Confidence 9 899999999999888776542 2359999999999977 99999999999999999999999999999999999999
Q ss_pred EEEEe-cCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 678 VVGVE-HEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 678 Vv~~~-~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|+++. +....+.++++|+........ ..+.++|++.++++|++|++|+.++++++||+|++||++|++|++++.
T Consensus 426 vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~~ 501 (502)
T TIGR01734 426 VVPKYNKDHKVEYLIAAIVPETEDFEKEFQLTKAIKKELKKSLPAYMIPRKFIYRDQLPLTANGKIDRKALAEEVN 501 (502)
T ss_pred EEEEEcCCCCceEEEEEEEecccccccchhhHHHHHHHHhhhChhhcCCcEEEEccccCCCCCCcccHHHHHHhhc
Confidence 99976 445678899999987543222 344588999999999999999999999999999999999999999875
|
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides. |
| >PRK06188 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=586.48 Aligned_cols=500 Identities=23% Similarity=0.294 Sum_probs=414.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|.++++ ++|+++|+++. .+.+||.||.++++++|..|.+.|+++|++|+++++|++++++++|||+++
T Consensus 13 ~~~~~~~~~~~-~~~~~~a~~~~------~~~~Ty~~l~~~~~~~a~~L~~~gv~~~~~V~i~~~~~~~~~~~~la~~~~ 85 (524)
T PRK06188 13 TYGHLLVSALK-RYPDRPALVLG------DTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPEVLMAIGAAQLA 85 (524)
T ss_pred cHHHHHHHHHH-HCCCCeEEEEC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 47788999998 89999999986 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++..++++++++++++++... ...+.+..... ..+..++.+.....
T Consensus 86 G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 145 (524)
T PRK06188 86 GLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPF--------VERALALLARV----PSLKHVLTLGPVPD-------- 145 (524)
T ss_pred CCEEEecccCCCHHHHHHHHHhcCceEEEEecchh--------hHHHHHHhhhc----CCceEEEEeCCccc--------
Confidence 99999999999999999999999999999976521 11111211111 23334443332110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..+..+.....+.........++++++|+|||||||.||+|+++|.+++ .........+++..+|++++..|++|
T Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~-~~~~~~~~~~~~~~~~~~l~~~pl~~ 220 (524)
T PRK06188 146 ----GVDLLAAAAKFGPAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIA-TMAQIQLAEWEWPADPRFLMCTPLSH 220 (524)
T ss_pred ----hhhHHHhhhccCcccccccCCCCCeEEEEeCCCCCCCCceeeeehHHHH-HHHHHHHhhcCCCcCcEEEEecCchh
Confidence 0000000010111111112245679999999999999999999999954 44455566788899999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..+. .++.+++.|+++++.+. .++..+++.++++++|+++.+|++++.|++.... ...+++++|.+++||++
T Consensus 221 ~~g~--~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~--~~~~l~~lr~~~~gg~~ 292 (524)
T PRK06188 221 AGGA--FFLPTLLRGGTVIVLAK----FDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL--RTRDLSSLETVYYGASP 292 (524)
T ss_pred hhhH--HHHHHHHcCCEEEEcCC----CCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCc--cCCCCcceeEEEEcCCC
Confidence 8774 46788999999999864 4799999999999999999999999999887542 23478899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC----CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEE
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~----~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~ 596 (778)
++++.++.+.+.++ ..+++.||+||++..+....... ......++|+|++++.++|+|+++++++.|+.|||+
T Consensus 293 ~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~ 369 (524)
T PRK06188 293 MSPVRLAEAIERFG---PIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEIC 369 (524)
T ss_pred CCHHHHHHHHHHhC---chhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEE
Confidence 99999998888887 56999999999975544322111 134567899999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceE
Q 004034 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676 (778)
Q Consensus 597 v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea 676 (778)
|+| |.++.||+++++.+...+ .+|||+|||++++++||++++.||.||+||++|++|+|.+||++|.+||+|.++
T Consensus 370 v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~ 444 (524)
T PRK06188 370 VRG--PLVMDGYWNRPEETAEAF---RDGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQV 444 (524)
T ss_pred EEC--cchhhhhcCChHHhhhhh---cCCceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEE
Confidence 999 899999999998776665 268999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 677 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
+|++++++..++.+++++++++....+ .++|+++++++++.|++|..|+++++||+|++||++|++|++.+.
T Consensus 445 ~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~ 516 (524)
T PRK06188 445 AVIGVPDEKWGEAVTAVVVLRPGAAVD---AAELQAHVKERKGSVHAPKQVDFVDSLPLTALGKPDKKALRARYW 516 (524)
T ss_pred EEEeccCCCcCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEecCCCCCccccccHHHHHHHHH
Confidence 999999887889999999987654433 578999999999999999999999999999999999999999974
|
|
| >PRK06018 putative acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=588.59 Aligned_cols=512 Identities=22% Similarity=0.297 Sum_probs=411.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||+++++...+ +..+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~~~~~~~~~a~-~~~~~~~~~~~~~--~~~~~~Ty~el~~~v~~la~~L~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~ 87 (542)
T PRK06018 11 LCHRIIDHAAR-IHGNREVVTRSVE--GPIVRTTYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGI 87 (542)
T ss_pred CHHHHHHHHHH-hCCCceEEEeecc--CCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchHHHHHHHHHHhc
Confidence 47899999998 8999999985321 23578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++.+++++++++.... ..+.+..... +.+..++.+.+..... ...+
T Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~ 152 (542)
T PRK06018 88 GAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFV---------PILEKIADKL----PSVERYVVLTDAAHMP--QTTL 152 (542)
T ss_pred CeEeeccccccCHHHHHHHHhccCCCEEEEccccH---------HHHHHHHhhC----CCccEEEEeccccccc--ccCc
Confidence 99999999999999999999999999999986542 2233322222 3444454443221100 0000
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHH-HHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMV-HTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~-~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.....|.+.+.............++++++|+|||||||.||||+++|++.+. .........+++..+|+++...|++
T Consensus 153 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 230 (542)
T PRK06018 153 --KNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLF 230 (542)
T ss_pred --cccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhcCCCCCCEEEEecCHH
Confidence 0122344433332222222345678899999999999999999999997432 2333344567888999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|..++. ..+.++..|+++++... .+++..+++.++++++|++.++|++++.|.+.... ...++++||.++++||
T Consensus 231 h~~~~~-~~~~~~~~g~~~v~~~~---~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~--~~~~~~~lr~~~~~G~ 304 (542)
T PRK06018 231 HANSWG-IAFSAPSMGTKLVMPGA---KLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEK--EGLKLPHLKMVVCGGS 304 (542)
T ss_pred HHhhhH-HHHhhhhcCceEEccCc---CCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccc--cCCCcccceEEEEcCC
Confidence 987743 44678899999988542 24789999999999999999999999999876532 2346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccC-CCC-C-------CCCCCCcCcCcCCceEEEECCCCceeCCC
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGA-W-------PQKPGSATFPFFGVQPVIVDEKGVEIEGE 590 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~-~~~-~-------~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g 590 (778)
+++++++++|.+ ++ +++++.||+||++.+.+... +.. . .....++|+|+++++++|+|+++++++.+
T Consensus 305 ~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~ 380 (542)
T PRK06018 305 AMPRSMIKAFED-MG---VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWD 380 (542)
T ss_pred CCCHHHHHHHHH-hC---CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCC
Confidence 999999999998 65 78999999999987544321 110 0 01235789999999999999999988753
Q ss_pred --eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 591 --CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 591 --~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
..|||+++| +.++.|||++.. . . .+.+|||+|||++++++||+++++||.||+||++|++|++.|||++|.
T Consensus 381 ~~~~Gel~i~g--~~~~~gy~~~~~---~-~-~~~~~~~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~ 453 (542)
T PRK06018 381 GKTFGRLKVRG--PAVAAAYYRVDG---E-I-LDDDGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAV 453 (542)
T ss_pred CCceeEEEEec--CCcchhhhcCcc---c-E-ecCCcEEEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHH
Confidence 689999999 899999999432 1 1 124789999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+||+|.+|+|++++++..++.+.++|++.++...+ .++++++++++++.|++|..|+++++||+|++||++|++|++
T Consensus 454 ~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~ 530 (542)
T PRK06018 454 GHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETAT---REEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTALRE 530 (542)
T ss_pred hCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCC---HHHHHHHHHhhCccccCCcEEEEeccCCCCCcchhhHHHHHH
Confidence 99999999999999988788999999988765443 468999999999999999999999999999999999999999
Q ss_pred HHhc
Q 004034 749 IASR 752 (778)
Q Consensus 749 ~~~~ 752 (778)
.+.+
T Consensus 531 ~~~~ 534 (542)
T PRK06018 531 QFKD 534 (542)
T ss_pred HHhc
Confidence 8864
|
|
| >PRK08279 long-chain-acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=598.74 Aligned_cols=517 Identities=23% Similarity=0.294 Sum_probs=398.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|.++++ ++||++|+++. .+++||+||.++++++|..|++.|+++||+|+|+++|++++++++|||+++
T Consensus 38 tl~~~l~~~a~-~~p~~~Ai~~~------~~~~Ty~eL~~~~~~la~~L~~~g~~~gd~V~i~~~n~~~~v~~~lA~~~~ 110 (600)
T PRK08279 38 SLGDVFEEAAA-RHPDRPALLFE------DQSISYAELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKL 110 (600)
T ss_pred cHHHHHHHHHH-hCCCCcEEEeC------CCcccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence 57889999998 89999999986 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.+++++++++++|+++... ..+.+..... .....++..+.... ..
T Consensus 111 G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------~~ 171 (600)
T PRK08279 111 GAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELV---------EAFEEARADL----ARPPRLWVAGGDTL------DD 171 (600)
T ss_pred CcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHhhhh----cccceEEEecCccc------cc
Confidence 99999999999999999999999999999986532 2222222221 11122222221100 00
Q ss_pred CCCcccchhhccCCCCC--CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCc
Q 004034 361 QDGRDIWWQDVVPKYPT--KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~--~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 438 (778)
......+.+.....+. ........++++++|+|||||||.||||+++|++++.+ .......+++.++|++++.+|+
T Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~l~~~d~~l~~~pl 249 (600)
T PRK08279 172 -PEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA-MGGFGGLLRLTPDDVLYCCLPL 249 (600)
T ss_pred -cccHHHHhhhcccCCccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHH-HHHHHHhcCCCCCcEEEEecCc
Confidence 0000011111111111 11123346789999999999999999999999996554 4445556899999999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|.+++...++.+|..|+++++.+. +++..+++.++++++|++.++|++++.++...... .....++|.+ +|
T Consensus 250 ~h~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~--~~~~~~l~~~--~g 321 (600)
T PRK08279 250 YHNTGGTVAWSSVLAAGATLALRRK----FSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKP--TDRDHRLRLM--IG 321 (600)
T ss_pred hhhhhHHHHHHHHHhcCcEEEEcCC----CCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCc--cccCcceeEE--ec
Confidence 9999987777788889999888653 58899999999999999999999999988764321 2234567754 48
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcC----CceE---------EEECCCC-
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF----GVQP---------VIVDEKG- 584 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~----g~~~---------~Ivd~~g- 584 (778)
+.+++++++++.+.++. ..+++.||+||++..... . ...++++|++.+ +..+ .|.+.++
T Consensus 322 ~~l~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~~-~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 394 (600)
T PRK08279 322 NGLRPDIWDEFQQRFGI--PRILEFYAASEGNVGFIN-V----FNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGR 394 (600)
T ss_pred CCCCHHHHHHHHHHhCc--ceeeeeecccccceeecc-c----CCCCcccccccccccccceeeeeccCcCceeeCCCCc
Confidence 88999999999999873 469999999999864332 1 123456676555 3332 2333333
Q ss_pred -ceeCCCeeeEEE--EecCCCcccccccCChhhhhhhcc----CCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCcee
Q 004034 585 -VEIEGECSGYLC--IKSSWPGAFRTLYGDHERYETTYF----KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHR 657 (778)
Q Consensus 585 -~~~~~g~~GEL~--v~g~~p~v~~gY~~~~~~~~~~~~----~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~r 657 (778)
.+++.|+.|||+ |++ ++++.|| ++++.+...++ ...++||+|||+|++|+||+++|+||.||+||++|+|
T Consensus 395 ~~~~~~g~~Gel~~~i~~--~~~~~GY-~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~ 471 (600)
T PRK08279 395 CIKVKPGEVGLLIGRITD--RGPFDGY-TDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGEN 471 (600)
T ss_pred cccCCCCCceeEEEEecC--ccccccc-CCchhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcc
Confidence 357889999998 677 8999999 88877666553 2346799999999999999999999999999999999
Q ss_pred eCHHHHHHHHhcCCccceEEEEEEecCC-CCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCC
Q 004034 658 IGTAEVESALVSHPQCAEAAVVGVEHEV-KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736 (778)
Q Consensus 658 I~~~eIE~~L~~~p~V~ea~Vv~~~~~~-~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T 736 (778)
|+|.|||++|.+||+|.+|+|++++++. .+...+++++..++...+ .++|+++|+++||.|++|..|+++++||+|
T Consensus 472 i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~vv~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 548 (600)
T PRK08279 472 VATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFD---LAALAAHLYERLPAYAVPLFVRLVPELETT 548 (600)
T ss_pred cCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEEEecCCccCC---HHHHHHHHHhhCccccCCeEEEeecCCCCC
Confidence 9999999999999999999999998764 345566666665433333 578999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHhcccCcCCCCCCCCChh
Q 004034 737 RSGKIMRRILRKIASRQLDELGDTSTLADPG 767 (778)
Q Consensus 737 ~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~ 767 (778)
++||++|++|+++..... +..+.....||.
T Consensus 549 ~~GKi~r~~L~~~~~~~~-~~~~~~~~~~~~ 578 (600)
T PRK08279 549 GTFKYRKVDLRKEGFDPS-KVDDPLYVLDPG 578 (600)
T ss_pred cchhhhHHHHhhcCCCcc-ccCCeeEEEecC
Confidence 999999999999876552 223434444443
|
|
| >PRK07059 Long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=588.55 Aligned_cols=512 Identities=22% Similarity=0.337 Sum_probs=410.3
Q ss_pred cHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
+++.++|.++++ ++|+++|+++. ++.+||.||+++++++|+.|.+.|+++||+|+|+++|++++++++|||++
T Consensus 23 ~~i~~~l~~~a~-~~p~~~a~~~~------~~~lTy~~l~~~~~~~a~~L~~~gi~~gd~V~i~~~n~~~~~~~~la~~~ 95 (557)
T PRK07059 23 PSLADLLEESFR-QYADRPAFICM------GKAITYGELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAIAAVLR 95 (557)
T ss_pred CCHHHHHHHHHH-HcCCCceEEEc------CceeeHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 368899999998 89999999986 57899999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc-----
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT----- 354 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----- 354 (778)
+|++++|++|.++.+++.+++++++++++|+++... ..+.+.... .....+++........
T Consensus 96 ~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 161 (557)
T PRK07059 96 AGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFA---------TTVQQVLAK-----TAVKHVVVASMGDLLGFKGHI 161 (557)
T ss_pred cCeEEeccCcccCHHHHHHHHHccCceEEEEchhhH---------HHHHHhhcc-----cCCceeEEecccccccccccc
Confidence 999999999999999999999999999999876532 112111111 1222222221100000
Q ss_pred ---------cccccCCCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---
Q 004034 355 ---------RENTKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--- 421 (778)
Q Consensus 355 ---------~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~--- 421 (778)
.....+.......+.+.+... ..........++++++|+|||||||.||||+++|++++.+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~ 241 (557)
T PRK07059 162 VNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQ 241 (557)
T ss_pred cccccccccccccccCCCCcccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhc
Confidence 000011111223333333221 1122234456899999999999999999999999996544332111
Q ss_pred HhhCCC---CCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 422 YAFDYK---PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 422 ~~~~~~---~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
..+... ....+++..|++|.+++....+.++..|++.++.+.. .++..+++.++++++|.+..+|+++..|...
T Consensus 242 ~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~ 318 (557)
T PRK07059 242 PAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNP---RDIPGFIKELKKYQVHIFPAVNTLYNALLNN 318 (557)
T ss_pred ccccccCCCCCcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCC---cCHHHHHHHHHHhCCeeeecCHHHHHHHHcC
Confidence 111111 2357788899999887666777888899988887542 3788999999999999999999999999876
Q ss_pred CCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEE
Q 004034 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (778)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 578 (778)
.. ....+++++|.++.||+++++.++++|.+.++ +++++.||+||++.+++..... ....+.++|+|+++++++
T Consensus 319 ~~--~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~p~~g~~v~ 392 (557)
T PRK07059 319 PD--FDKLDFSKLIVANGGGMAVQRPVAERWLEMTG---CPITEGYGLSETSPVATCNPVD-ATEFSGTIGLPLPSTEVS 392 (557)
T ss_pred cC--cCcCCchhheEEEeccccCCHHHHHHHHHHhC---CCeeeccccccccchhhcCCCC-CCCcCCcccCccCCcEEE
Confidence 53 23456789999999999999999999998886 7899999999998765433221 123467899999999999
Q ss_pred EECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceee
Q 004034 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 658 (778)
Q Consensus 579 Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI 658 (778)
|+|+++++++.|+.|||+|+| +.++.||+++++.+...+.. +|||+|||++++++||+++++||+||+||++|++|
T Consensus 393 i~d~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~~~~~~~~--~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i 468 (557)
T PRK07059 393 IRDDDGNDLPLGEPGEICIRG--PQVMAGYWNRPDETAKVMTA--DGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNV 468 (557)
T ss_pred EECCCCCCCCCCCceEEEEeC--CccchhhhcCHHHHhhhccc--CCceecCcEEEEcCCCcEEEecccccceEECCEEE
Confidence 999999999999999999999 89999999999888766543 78999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCC
Q 004034 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738 (778)
Q Consensus 659 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~s 738 (778)
+|.|||++|.+||+|.+++|+++++...++.++++|+..+.. .+ .++++++++++|+.+++|..+++++++|+|++
T Consensus 469 ~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~~~-~~---~~~l~~~~~~~l~~~~~P~~i~~v~~~P~t~~ 544 (557)
T PRK07059 469 YPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKDPA-LT---EEDVKAFCKERLTNYKRPKFVEFRTELPKTNV 544 (557)
T ss_pred cHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCCCC-CC---HHHHHHHHHHhcccccCCcEEEEeccCCCCcc
Confidence 999999999999999999999999888889999999876432 22 46899999999999999999999999999999
Q ss_pred CcccHHHHHHH
Q 004034 739 GKIMRRILRKI 749 (778)
Q Consensus 739 GKi~R~~L~~~ 749 (778)
||++|+.|+++
T Consensus 545 GK~~r~~L~~~ 555 (557)
T PRK07059 545 GKILRRELRDG 555 (557)
T ss_pred cceeHHHHHhh
Confidence 99999999864
|
|
| >TIGR03205 pimA dicarboxylate--CoA ligase PimA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=586.80 Aligned_cols=509 Identities=23% Similarity=0.332 Sum_probs=407.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ .+|+++|+++. ++.+||.||.++++++|++|.++|+++||+|+|+++|++++++++|||+++
T Consensus 22 ~~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~ 94 (541)
T TIGR03205 22 TLPDLLSKAAA-DYGPRPALEFR------DRPITYTELEAMAETAAAALLRAGYGKDASVALYLGNTPDHPINFFGALKA 94 (541)
T ss_pred CHHHHHHHHHH-HcCCCceEEEC------CcEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCChHHHHHHHHHHhc
Confidence 57889999888 89999999876 578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcc--ccccc
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM--TRENT 358 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~--~~~~~ 358 (778)
|++++|++|.++.+++.+++++++++++|+++... ....+.+.... ..+..+++++..... .....
T Consensus 95 G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 162 (541)
T TIGR03205 95 GARVVHLSPLDGERALSHKLSDSGARLLITSDLAA-------LLPMALKFLEK-----GLLDRLIVCEDDNWGKVGTPQA 162 (541)
T ss_pred CeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchh-------hhHHHHHhhhc-----ccceEEEEeccccccccccccc
Confidence 99999999999999999999999999999875321 11111111111 112333333321100 00000
Q ss_pred cC-CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH-----hhCCCCCcEE
Q 004034 359 KW-QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-----AFDYKPSDVY 432 (778)
Q Consensus 359 ~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~-----~~~~~~~d~~ 432 (778)
.. .......|.+.+.............++++++|+|||||||.||||+++|+++..... .... .+.....+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (541)
T TIGR03205 163 PIPADPRIVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVS-IYDVWGKPSRATRGDVERV 241 (541)
T ss_pred ccCCCcccccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHH-HHHhhcccccccCCCCceE
Confidence 00 011123344443322222222345678999999999999999999999999653322 1111 1122335789
Q ss_pred EEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCcee
Q 004034 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (778)
Q Consensus 433 l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr 512 (778)
++..|++|..++...++.++..|+++++... .++..+++.|+++++|++..+|++++.|.+... ....+++++|
T Consensus 242 l~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~ 315 (541)
T TIGR03205 242 ICVLPLFHIYALTVILLRSLRRGDLISLHQR----FDVAAVFRDIEEKRATVFPGVPTMWIALANDPS--LEKRDLSSLA 315 (541)
T ss_pred EEeccHHHHHHHHHHHHHHHhcCCEEEecCC----CCHHHHHHHHHHcCCeEeechHHHHHHHHhCcc--ccccCccccc
Confidence 9999999998877778899999999888743 489999999999999999999999999987532 2234678999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEE--CCCCceeCCC
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV--DEKGVEIEGE 590 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Iv--d~~g~~~~~g 590 (778)
.+++||+++++++.+++.+.++ +++++.||+||++.+.+..... ....++++|+|++++.++|+ |+++++++.|
T Consensus 316 ~i~~gg~~~~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g 391 (541)
T TIGR03205 316 TIGSGGAPLPVEVANFFERKTG---LKLKSGWGMTETCSPGTGHPPE-GPDKPGSIGLMLPGIELDVVSLDDPTKVLPPG 391 (541)
T ss_pred eEEEccccCCHHHHHHHHHHhC---CCeecccccccCCcccccCCCC-CCCCCCCcceeccCceeEEEecCCCCccCCCC
Confidence 9999999999999999988876 6899999999998765533221 12356789999999998875 6778999999
Q ss_pred eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 591 ~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+.|||+|+| |+++.||+++++.+.+.|. ++||+|||++++++||+++++||.||+||++|++|+|.|||++|.+|
T Consensus 392 ~~Gel~v~~--~~~~~gy~~~~~~~~~~~~---~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~ 466 (541)
T TIGR03205 392 EVGELRIRG--PNVTRGYWNRPEESAEAFV---GDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEH 466 (541)
T ss_pred CeeEEEEec--CCccccccCChhhhHhhhc---cCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhC
Confidence 999999999 8999999999988877654 57999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCCCC-CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP-YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~-~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
|+|.+++|++++++..++.+++++++.++.. .+ .++|+++++++|++|++|..|+++++||+|++||++|+.|+
T Consensus 467 ~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~ 541 (541)
T TIGR03205 467 PGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFS---LDELRAFLAGKLGKHELPVAVEFVDELPRTPVGKLSRHELR 541 (541)
T ss_pred CCeeeEEEEecCCcccCceEEEEEEECCCCCcCC---HHHHHHHHHhhcccccCCcEEEEeccCCCCcccceeHhhcC
Confidence 9999999999998877889999999876532 22 57899999999999999999999999999999999999874
|
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. |
| >PLN02387 long-chain-fatty-acid-CoA ligase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-65 Score=608.53 Aligned_cols=533 Identities=20% Similarity=0.227 Sum_probs=398.0
Q ss_pred cHHHHHHHHhhhccCCCeEEEEEEc---------CC--------CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004034 200 NICYNCLDRNIEAGLGDKVAIYWEA---------ND--------PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262 (778)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~---------~~--------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai 262 (778)
+++.++|+++++ .+||++|+.+.. .+ .+..+.+||+||.++++++|++|.++|+++||+|+|
T Consensus 58 ~t~~~l~~~~~~-~~pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~lG~~~gd~Vai 136 (696)
T PLN02387 58 TTLAALFEQSCK-KYSDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVALGHNKEERVAI 136 (696)
T ss_pred CCHHHHHHHHHH-HCCCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 467899999999 899999995421 00 123456999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCcc
Q 004034 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVD 342 (778)
Q Consensus 263 ~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (778)
+++|++||++++|||+++|+++||+++.++.+++.++|++++++++|+++... ..+......+ +.++
T Consensus 137 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~---------~~l~~~~~~~----~~l~ 203 (696)
T PLN02387 137 FADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQL---------KKLIDISSQL----ETVK 203 (696)
T ss_pred EcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHH---------HHHHHHhhcc----CCce
Confidence 99999999999999999999999999999999999999999999999975431 1122222222 4566
Q ss_pred EEEEEccCCccccccc-cCCCCcccchhhccCCCCC-CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHH
Q 004034 343 VCLTYENQSAMTRENT-KWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (778)
Q Consensus 343 ~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~ 420 (778)
.++.+++......... .........|.+....... ..+.....++|+++|+|||||||.||||+++|++++.+.....
T Consensus 204 ~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~ 283 (696)
T PLN02387 204 RVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVM 283 (696)
T ss_pred EEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHH
Confidence 7777764321000000 0000011234433322111 1122334689999999999999999999999999765544433
Q ss_pred HHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCC-----hhHHHHHHHHhCccEEEecHHHHHHH
Q 004034 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD-----SGRSWDIVDKYKVTIFYTAPTLVRSL 495 (778)
Q Consensus 421 ~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~-----~~~~~~~i~~~~vT~l~~~Ps~l~~L 495 (778)
....++.++|++++++|++|+++.... +..+..|+++.+.... ...+ +..+++.++++++|++.++|++++.|
T Consensus 284 ~~~~~~~~~d~~l~~lPl~Hi~~~~~~-~~~~~~g~~i~~g~~~-~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l 361 (696)
T PLN02387 284 TVVPKLGKNDVYLAYLPLAHILELAAE-SVMAAVGAAIGYGSPL-TLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRV 361 (696)
T ss_pred hhcCCCCCCCEEEEECcHHHHHHHHHH-HHHHHhCCEEEECChh-hhcccccccccCchhhHHHhCCcEEEehhHHHHHH
Confidence 333467889999999999999886543 3456778777653221 1101 23456789999999999999999988
Q ss_pred HhcCCcccc--------------------------------------------cCCC-CceeEEEEecCCCCHHHHHHHH
Q 004034 496 MRDGNEYVT--------------------------------------------RYSR-KSLRVLGSVGEPINPSAWRWFF 530 (778)
Q Consensus 496 ~~~~~~~~~--------------------------------------------~~~l-~sLr~v~~gGe~l~~~~~~~~~ 530 (778)
.+....... +..+ +++|.+++||+++++++.+++.
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~ 441 (696)
T PLN02387 362 RDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFIN 441 (696)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHH
Confidence 753210000 0001 5899999999999999988887
Q ss_pred HHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCce-e--CCCeeeEEEEecCCCcccc
Q 004034 531 NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVE-I--EGECSGYLCIKSSWPGAFR 606 (778)
Q Consensus 531 ~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~-~--~~g~~GEL~v~g~~p~v~~ 606 (778)
..+| +++++.||+||+++..+..... ....+++|+|+++++++|+| +++.. + .++..|||+|+| |++++
T Consensus 442 ~~~g---~~v~~~YG~TEt~~~~~~~~~~--~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrG--p~v~~ 514 (696)
T PLN02387 442 ICLG---APIGQGYGLTETCAGATFSEWD--DTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGG--PSVTL 514 (696)
T ss_pred HHcC---CCeeEeechhhcccceeecCcc--cCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEecc--Ccccc
Confidence 7776 7899999999998765543332 23568999999999999998 44432 2 233469999999 89999
Q ss_pred cccCChhhhhhhccCCCCC--eEEcCcEEEEecCCeEEEEeecCCEEEeC-ceeeCHHHHHHHHhcCCccceEEEEEEec
Q 004034 607 TLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEH 683 (778)
Q Consensus 607 gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~-G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~ 683 (778)
|||++++.+.+.|..+.+| ||+|||+|++|+||+|+|+||+||+||++ |++|+|.|||++|.+||.|.+++|++.+.
T Consensus 515 GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~~~p~V~~~~V~g~~~ 594 (696)
T PLN02387 515 GYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALSVSPYVDNIMVHADPF 594 (696)
T ss_pred hhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHhcCCCeeEEEEEecCC
Confidence 9999999999887543345 99999999999999999999999999995 99999999999999999999999998542
Q ss_pred CCCCeEEEEEEEEcCCC----------C--------CCHHHHHHHHHHHH-----hhcCCCccccEEEECCCCC------
Q 004034 684 EVKGQGIYAFVTLVEGV----------P--------YSEELRKSLVLAVR-----KQIGAFAAPDKIHWAPGLP------ 734 (778)
Q Consensus 684 ~~~~~~lva~Vv~~~~~----------~--------~~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~lP------ 734 (778)
...++|+|++.+.. . .++++.+++.+.+. .+|+.|.+|+.|.++++-.
T Consensus 595 ---~~~~~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~~~~i~l~~~~~t~~~g~ 671 (696)
T PLN02387 595 ---HSYCVALVVPSQQALEKWAKKAGIDYSNFAELCEKEEAVKEVQQSLSKAAKAARLEKFEIPAKIKLLPEPWTPESGL 671 (696)
T ss_pred ---cceEEEEEEeCHHHHHHHHHHcCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHcCCCCcceeeEEEEECCCCCCCCCc
Confidence 34688999985421 0 01233444444443 3699999999999988643
Q ss_pred CCCCCcccHHHHHHHHhcccCcCC
Q 004034 735 KTRSGKIMRRILRKIASRQLDELG 758 (778)
Q Consensus 735 ~T~sGKi~R~~L~~~~~~~~~~~~ 758 (778)
+|++.|+.|+.+++.+++++++++
T Consensus 672 lT~t~K~~R~~i~~~y~~~i~~ly 695 (696)
T PLN02387 672 VTAALKLKREQIRKKFKDDLKKLY 695 (696)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHh
Confidence 678889999999999998877654
|
|
| >PRK06164 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-64 Score=584.54 Aligned_cols=512 Identities=22% Similarity=0.283 Sum_probs=408.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.++|+++++ .+|+++|++.. .+++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++
T Consensus 11 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~~L~~~~~~~a~~L~~~g~~~g~~V~i~~~n~~~~~~~~la~~~~ 83 (540)
T PRK06164 11 TLASLLDAHAR-ARPDAVALIDE------DRPLSRAELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARL 83 (540)
T ss_pred CHHHHHHHHHH-hCCCCeEEecC------CCcccHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 47889999998 89999999954 678999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+++.++.+++.+++++++++++|++++... +.+...+....... .+.+..++.++.... . .
T Consensus 84 G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~--~ 150 (540)
T PRK06164 84 GATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKG----IDFAAILAAVPPDA---LPPLRAIAVVDDAAD----A--T 150 (540)
T ss_pred CcEEEecCCCCCcHHHHHHHHhcCccEEEEcccccc----ccHHHHhhcccccc---cCCcceEEEeccCcc----c--C
Confidence 999999999999999999999999999999776421 12222222211110 023344444431110 0 0
Q ss_pred CCCcccchhhccCCCCCC-C---CccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 361 QDGRDIWWQDVVPKYPTK-C---EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~-~---~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
.......+.......... . ......++++++++|||||||+||||+++|.+++. ........+++.+++++++.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~-~~~~~~~~~~~~~~~~~l~~~ 229 (540)
T PRK06164 151 PAPAPGARVQLFALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLR-HARAIARAYGYDPGAVLLAAL 229 (540)
T ss_pred CCCCcccccccccccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHH-HHHHHHHhcCCCCCCEEEEcC
Confidence 000000111111100000 0 01223468899999999999999999999999554 444556678889999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
|++|.+|+ ..++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+.. ....+++++|.+.+
T Consensus 230 p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~---~~~~~~~~l~~~~~ 301 (540)
T PRK06164 230 PFCGVFGF-STLLGALAGGAPLVCEPV----FDAARTARALRRHRVTHTFGNDEMLRRILDTA---GERADFPSARLFGF 301 (540)
T ss_pred CchhHHHH-HHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh---cccCCCcceeeeee
Confidence 99999985 578999999999998753 48899999999999999999999999998872 23457889998877
Q ss_pred ec-CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC-CCCCCCCcCcCc-CCceEEEECC-CCceeCCCee
Q 004034 517 VG-EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPF-FGVQPVIVDE-KGVEIEGECS 592 (778)
Q Consensus 517 gG-e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~-~g~~~~Ivd~-~g~~~~~g~~ 592 (778)
+| .+...++.+++.+. + +++++.||+||++.+++...... ......+.|.|+ +++.++|+|+ ++++++.|+.
T Consensus 302 ~~~~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~ 377 (540)
T PRK06164 302 ASFAPALGELAALARAR-G---VPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGES 377 (540)
T ss_pred ccCCcchHHHHHHHhhc-C---CceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCe
Confidence 66 55666777776654 3 78999999999987654332211 112334568876 7999999995 7889999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
|||+|+| |+++.||+++++.+...+.. +|||+|||+|++|+||++++.||.||+||++|++|+|.|||++|.+||+
T Consensus 378 Gel~v~g--~~~~~gY~~~~~~t~~~~~~--~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~ 453 (540)
T PRK06164 378 GEIEIRA--PSLMRGYLDNPDATARALTD--DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPG 453 (540)
T ss_pred eEEEEec--ccccccccCCchhhhhcccC--CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCC
Confidence 9999999 89999999999988877654 6899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCC---cccHHHHHHH
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSG---KIMRRILRKI 749 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sG---Ki~R~~L~~~ 749 (778)
|.+++|++++. .+++.++++|++.++...+ .++|+++++++||+|++|+.|++++++|+|++| |++|+.|+++
T Consensus 454 v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~~---~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~ 529 (540)
T PRK06164 454 VAAAQVVGATR-DGKTVPVAFVIPTDGASPD---EAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRLREM 529 (540)
T ss_pred ceeEEEEecCC-CCceeEEEEEEeCCCCCCC---HHHHHHHHHhhcccCcCCcEEEEecCCCCCCCCccccccHHHHHHH
Confidence 99999999884 4567899999987664433 578999999999999999999999999999999 9999999998
Q ss_pred Hhcc
Q 004034 750 ASRQ 753 (778)
Q Consensus 750 ~~~~ 753 (778)
++..
T Consensus 530 ~~~~ 533 (540)
T PRK06164 530 AQAR 533 (540)
T ss_pred HHHh
Confidence 7654
|
|
| >PRK07867 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-64 Score=581.67 Aligned_cols=485 Identities=23% Similarity=0.294 Sum_probs=397.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
.+..+|++++ .++++|+++. ++++||.||+++++++|++|+++ |++++++|+|+++|++++++++|||++
T Consensus 6 ~~~~~l~~~a---~~~~~a~~~~------~~~~Ty~el~~~v~~lA~~L~~~~~~~~~~~V~i~~~n~~~~~~~~lA~~~ 76 (529)
T PRK07867 6 TVAELLLPLA---EDDDRGLYFE------DSFTSWREHIRGSAARAAALRARLDPTRPPHVGVLLDNTPEFSLLLGAAAL 76 (529)
T ss_pred cHHHHHHHhc---ccCCceEEEC------CcEEeHHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4677887765 3789999876 57899999999999999999997 899999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.+++++++++++|+++.... . ++.+. ..+. ++..+.
T Consensus 77 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~---------~----~~~~~---~~~~-~~~~~~---------- 129 (529)
T PRK07867 77 SGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAE---------L----LDGLD---PGVR-VINVDS---------- 129 (529)
T ss_pred cCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHH---------H----HHhhc---cCce-EEEecc----------
Confidence 9999999999999999999999999999999875421 1 11110 1111 222211
Q ss_pred CCCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCc
Q 004034 360 WQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADC 438 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~ 438 (778)
..|.+.+... ..........++++++|+|||||||.||||+++|+++. .........+++.++|++++.+|+
T Consensus 130 ------~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~-~~~~~~~~~~~~~~~d~~l~~~pl 202 (529)
T PRK07867 130 ------PAWADELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRKVA-SAGVMLAQRFGLGPDDVCYVSMPL 202 (529)
T ss_pred ------ccHHHHhcccCCCCCCcccCCccceEEEEECCCCCCCCcEEEecHHHHH-HHHHHHHHhhCCCcccEEEEecch
Confidence 0122222211 11122234567999999999999999999999999964 444445667889999999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|..++...++.+|..|+++++.+. +++..+++.++++++|++..+|+.+..++..... .....+++|. ++||
T Consensus 203 ~~~~~~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~--~~~~~~~lr~-~~gg 275 (529)
T PRK07867 203 FHSNAVMAGWAVALAAGASIALRRK----FSASGFLPDVRRYGATYANYVGKPLSYVLATPER--PDDADNPLRI-VYGN 275 (529)
T ss_pred hHHHHHHHHHHHHHhcCceEEecCC----CCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCc--ccccccceEE-EecC
Confidence 9999877777889999999998753 4889999999999999999999999998876432 1123357884 5688
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCe------
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGEC------ 591 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~------ 591 (778)
+++++.. .++.+.+| +++++.||+||++...... + ...++++|.|+++ ++|+| +++++++.|+
T Consensus 276 ~~~~~~~-~~~~~~~g---~~l~~~YG~TE~~~~~~~~-~---~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~ 345 (529)
T PRK07867 276 EGAPGDI-ARFARRFG---CVVVDGFGSTEGGVAITRT-P---DTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRL 345 (529)
T ss_pred CCChHHH-HHHHHHhC---CcEEEeecccccccccccC-C---CCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccc
Confidence 8888765 56677776 6899999999998654321 1 1345789999999 66777 4788899888
Q ss_pred ------eeEEEE-ecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHH
Q 004034 592 ------SGYLCI-KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664 (778)
Q Consensus 592 ------~GEL~v-~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE 664 (778)
.|||++ +| |+++.||+++++.+...+- +|||+|||+++++++|+++|+||.||+||++|++|+|.|||
T Consensus 346 ~~~~~~~Gel~i~~g--~~~~~gy~~~~~~~~~~~~---~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE 420 (529)
T PRK07867 346 LNADEAIGELVNTAG--PGGFEGYYNDPEADAERMR---GGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIE 420 (529)
T ss_pred cccCCcceEEEEecC--CcccccccCChHhhhhhhc---CCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHH
Confidence 899999 99 8999999999988776552 68999999999999999999999999999999999999999
Q ss_pred HHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh--cCCCccccEEEECCCCCCCCCCccc
Q 004034 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ--IGAFAAPDKIHWAPGLPKTRSGKIM 742 (778)
Q Consensus 665 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~--Lp~~~~P~~i~~v~~lP~T~sGKi~ 742 (778)
++|.+||+|.+|+|++++++..++.++++|+..++...+ .++++++++++ |+.|++|..|+++++||+|++||++
T Consensus 421 ~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~ 497 (529)
T PRK07867 421 RILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFD---PDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVL 497 (529)
T ss_pred HHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCC---HHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCccee
Confidence 999999999999999999998899999999998765444 56788888775 9999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 004034 743 RRILRKIASRQ 753 (778)
Q Consensus 743 R~~L~~~~~~~ 753 (778)
|+.|+++....
T Consensus 498 r~~L~~~~~~~ 508 (529)
T PRK07867 498 KRQLSAEGVDC 508 (529)
T ss_pred HHHHHHhcCCC
Confidence 99999987643
|
|
| >PRK13383 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=582.74 Aligned_cols=477 Identities=22% Similarity=0.253 Sum_probs=394.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+...|.++++ .+||++|+++. .+.+||+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 37 ~~~~~~~~a~-~~p~~~a~~~~------~~~lTy~el~~~~~~la~~L~~~gi~~g~~V~i~~~~~~~~~~~~la~~~~G 109 (516)
T PRK13383 37 PYTLLAVTAA-RWPGRTAIIDD------DGALSYRELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLG 109 (516)
T ss_pred HHHHHHHHHH-HCCCCcEEEeC------CCcEeHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 5666788888 89999999875 5689999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.+++++++++++++++.... . +... ...++.++....
T Consensus 110 ~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~----~~~~------~~~~~~~~~~~~--------- 161 (516)
T PRK13383 110 ADVVPISTEFRSDALAAALRAHHISTVVADNEFAE---------R----IAGA------DDAVAVIDPATA--------- 161 (516)
T ss_pred eEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHH---------H----HHhh------hcceEEeccchh---------
Confidence 99999999999999999999999999999875421 1 1111 011222221100
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHH--HHHHHHhhCCCCCcEEEEeCCcc
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT--ATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~--~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.... . ...+...++.++|+|||||||+||||+++|... ... .......+++.++|+++...|++
T Consensus 162 ---------~~~~-~---~~~p~~~~~~~~il~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~pl~ 227 (516)
T PRK13383 162 ---------GAEE-S---GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLR-SAVGVWVTILDRTRLRTGSRISVAMPMF 227 (516)
T ss_pred ---------hhhc-C---CCCCCCCCCCcEEEECCCCCCCCCeeeecchhh-hhhhhHHhHHhhhccCCCCeEEEecCCc
Confidence 0000 0 001123456789999999999999999999742 211 11122346788899999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|.+++ ..++.++..|+++++... ++++.+++.++++++|.+.++|++++.|...........+++++|.+++||+
T Consensus 228 h~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~ 302 (516)
T PRK13383 228 HGLGL-GMLMLTIALGGTVLTHRH----FDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGD 302 (516)
T ss_pred chhhH-HHHHHHHhcCCEEEECCC----CCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCC
Confidence 99986 456778999999987642 5889999999999999999999999999876432222345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++++++|.+.++ +.+++.||+||++........ .....++++|+|+++++++|+|+++++++.|+.|||+++|
T Consensus 303 ~l~~~~~~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g 378 (516)
T PRK13383 303 RLDPTLGQRFMDTYG---DILYNGYGSTEVGIGALATPA-DLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGG 378 (516)
T ss_pred CCCHHHHHHHHHHcC---chhhhcccccccccceecccc-ccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 999999999999987 679999999999865543321 1234567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVV 679 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv 679 (778)
+.++.+|++++... + .+|||+|||++++|++|+++++||.||+||++|++|+|.|||++|.+||.|.+++|+
T Consensus 379 --~~~~~~Y~~~~~~~----~--~~g~~~TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv 450 (516)
T PRK13383 379 --ELAGTRYTDGGGKA----V--VDGMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVI 450 (516)
T ss_pred --CcccccccCCchhh----e--ecCceecceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEE
Confidence 88999999876421 1 268999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 680 GVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
++++...++.+.++|+.+++...+ .++|+++++++++.|++|..|+++++||+|++||++|+.|+
T Consensus 451 ~~~~~~~g~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~ 515 (516)
T PRK13383 451 GVPDERFGHRLAAFVVLHPGSGVD---AAQLRDYLKDRVSRFEQPRDINIVSSIPRNPTGKVLRKELP 515 (516)
T ss_pred eccccccCceEEEEEEECCCCCCC---HHHHHHHHHHhcccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence 999888889999999987654433 46899999999999999999999999999999999999985
|
|
| >PRK08751 putative long-chain fatty acyl CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=588.02 Aligned_cols=510 Identities=22% Similarity=0.293 Sum_probs=406.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
.+.++|.++++ .+|+++|+++. ++++||+||.++++++|+.|. +.|+++||+|+++++|++++++++|||++
T Consensus 26 ~~~~~l~~~~~-~~~~~~a~~~~------~~~~Ty~el~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 98 (560)
T PRK08751 26 TVAEVFATSVA-KFADRPAYHSF------GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLR 98 (560)
T ss_pred cHHHHHHHHHH-hCCCCceEEEC------CceeeHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47788999998 89999999975 678999999999999999997 68999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc-----
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT----- 354 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~----- 354 (778)
+|++++|++|.++.+++.+++++++++++++++... ..+.+.... .....++..+......
T Consensus 99 ~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 164 (560)
T PRK08751 99 AGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFG---------TTVQQVIAD-----TPVKQVITTGLGDMLGFPKAA 164 (560)
T ss_pred hCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhH---------HHHHHHhhC-----CCccEEEEechhhhcccccch
Confidence 999999999999999999999999999999987542 112222111 1122233221000000
Q ss_pred ---------cc-cccCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh
Q 004034 355 ---------RE-NTKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (778)
Q Consensus 355 ---------~~-~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (778)
.. ...........|.+.+.... ...+.....++++++|+|||||||.||||+++|.+++.+.... ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~-~~~ 243 (560)
T PRK08751 165 LVNFVVKYVKKLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQA-HQW 243 (560)
T ss_pred hhhhhhhhhhccccccCCCccccHHHHHhccCCCCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHH-HHh
Confidence 00 00000011122222222111 1122334567899999999999999999999999965544332 223
Q ss_pred hC----CCCC-cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhc
Q 004034 424 FD----YKPS-DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (778)
Q Consensus 424 ~~----~~~~-d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~ 498 (778)
++ +.++ +++++..++.|..++....+.++..|+++++.... .++..+++.++++++|++..+|+++..+.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 320 (560)
T PRK08751 244 LAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNP---RDMPGFVKELKKTRFTAFTGVNTLFNGLLNT 320 (560)
T ss_pred hccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCc---CCHHHHHHHHHhcceeEecChHHHHHHHHcC
Confidence 32 3343 57788899999888666667778888888777542 4788999999999999999999999999886
Q ss_pred CCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEE
Q 004034 499 GNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578 (778)
Q Consensus 499 ~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~ 578 (778)
.. ..+.++++||.+++||+++++.+.+.+.+.++ +++++.||+||++..++.... .....++++|.|++++.++
T Consensus 321 ~~--~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~vG~~~~~~~v~ 394 (560)
T PRK08751 321 PG--FDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAACINPL-TLKEYNGSIGLPIPSTDAC 394 (560)
T ss_pred cC--cCCcchhhheeeeeCCCCCCHHHHHHHHHHhC---CeEEEeeccccCCCceecccc-cccccCCCcCccCCCceEE
Confidence 43 23456789999999999999999999998876 689999999999876543321 1123467899999999999
Q ss_pred EECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceee
Q 004034 579 IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 658 (778)
Q Consensus 579 Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI 658 (778)
|+|+++++++.|+.|||+|+| +.+++||+++++.+...+. .+|||+|||+|+++++|+++++||.||+||++|++|
T Consensus 395 i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~--~~g~~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v 470 (560)
T PRK08751 395 IKDDAGTVLAIGEIGELCIKG--PQVMKGYWKRPEETAKVMD--ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNV 470 (560)
T ss_pred EECCCCCCCCCCCceEEEEec--CccchhhcCChhhhhhccc--cCCCccccceEEEcCCceEEEEeechhheeECCEEE
Confidence 999999999999999999999 8899999999988776553 368999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCC
Q 004034 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738 (778)
Q Consensus 659 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~s 738 (778)
+|.|||++|.+||+|.+++|+++++...++.++++++.... ..+ .++|+++++++++.|++|..|+++++||+|++
T Consensus 471 ~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~-~~~---~~~l~~~~~~~l~~~~~P~~v~~v~~lP~t~~ 546 (560)
T PRK08751 471 YPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDP-ALT---AEDVKAHARANLTGYKQPRIIEFRKELPKTNV 546 (560)
T ss_pred cHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCC-CCC---HHHHHHHHHHhhhhccCCeEEEEhhhCCCCcc
Confidence 99999999999999999999999988778888888876532 222 56899999999999999999999999999999
Q ss_pred CcccHHHHHHH
Q 004034 739 GKIMRRILRKI 749 (778)
Q Consensus 739 GKi~R~~L~~~ 749 (778)
||++|++|++.
T Consensus 547 gKv~r~~L~~~ 557 (560)
T PRK08751 547 GKILRRELRDA 557 (560)
T ss_pred ccccHHHHHHh
Confidence 99999999876
|
|
| >PLN03051 acyl-activating enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=581.74 Aligned_cols=469 Identities=25% Similarity=0.382 Sum_probs=354.6
Q ss_pred eCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccE
Q 004034 264 LPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDV 343 (778)
Q Consensus 264 ~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (778)
+||++|+++++|||+++|++++|+++.++++++.++|++++++++|+++......+.... +.+.... ....
T Consensus 1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~---~~~~~~~-----~~~~- 71 (499)
T PLN03051 1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPL---YSKVVEA-----APAK- 71 (499)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecc---hhhhhhc-----ccce-
Confidence 689999999999999999999999999999999999999999999998653211111111 1111111 1112
Q ss_pred EEEEccCCccccccccCCCCcccchhhccCCC-------CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHH
Q 004034 344 CLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-------PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT 416 (778)
Q Consensus 344 vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~ 416 (778)
.+++....... .... ......|.+.+... ..........++|+++|+|||||||.||||+++|++++.+.
T Consensus 72 ~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~ 148 (499)
T PLN03051 72 AIVLPAAGEPV--AVPL-REQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCA 148 (499)
T ss_pred EEEEeccCccc--CCcc-ccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHH
Confidence 22222110000 0000 00122344433110 00111122356899999999999999999999999965543
Q ss_pred HHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHH
Q 004034 417 ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (778)
Q Consensus 417 ~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~ 496 (778)
. .....+++.++|++++.+|++|+.+. +.++.+|+.|+++++.+.. +++..+++.|+++++|++.++|++++.|+
T Consensus 149 ~-~~~~~~~~~~~d~~l~~~pl~h~~g~-~~~~~~l~~G~t~v~~~~~---~~~~~~~~~i~~~~vt~~~~vP~~~~~l~ 223 (499)
T PLN03051 149 S-DGWAHMDIQPGDVVCWPTNLGWMMGP-WLLYSAFLNGATLALYGGA---PLGRGFGKFVQDAGVTVLGLVPSIVKAWR 223 (499)
T ss_pred H-HHHHhcCCCCCCEEEEccCcceeeeh-HHHHHHHHcCCEEEecCCC---CCcHHHHHHHHHhCCcEEEeCHHHHHHHH
Confidence 3 33345788899999999999999884 5788999999999998642 36789999999999999999999999998
Q ss_pred hcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCce
Q 004034 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQ 576 (778)
Q Consensus 497 ~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~ 576 (778)
+.........++++||.+++|||++++++.+++.+..+. ++++++.||+||++...+..... .+.+++++|+|+++++
T Consensus 224 ~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~-~~~~~~~~G~p~~~~~ 301 (499)
T PLN03051 224 HTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPVIEYCGGTELASGYISSTLL-QPQAPGAFSTASLGTR 301 (499)
T ss_pred hcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccc-cceeEeeeccccccceeeccccc-CCCCCccccCCCCCce
Confidence 754211234577899999999999999999888774321 26799999999987543322211 1345678999999999
Q ss_pred EEEECCCCceeCCC--eeeEEEEecCCCcccccccCChhhhhhhccCC-------CCCeEEcCcEEEEecCCeEEEEeec
Q 004034 577 PVIVDEKGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKP-------FPGYYFTGDGCSRDKDGYHWLTGRV 647 (778)
Q Consensus 577 ~~Ivd~~g~~~~~g--~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~-------~~G~yrTGDl~~~~~dG~l~~~GR~ 647 (778)
++|+|++|++++.| +.|||+|+||+.+++.|||+++. ...++.. ..+||+|||+|++|+||+|+|+||.
T Consensus 302 ~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~--~~~~~~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~ 379 (499)
T PLN03051 302 FVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH--DKVYYKGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRA 379 (499)
T ss_pred EEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc--cceeeecCCccccCCcceeecCCeEEECCCCcEEEEecc
Confidence 99999999999988 58999999954445789998653 2333321 1237999999999999999999999
Q ss_pred CCEEEeCceeeCHHHHHHHHhc-CCccceEEEEEEecCCCC-eEEEEEE---EEcCCC-C-CCHHHHHHHHHHHHhhcCC
Q 004034 648 DDVINVSGHRIGTAEVESALVS-HPQCAEAAVVGVEHEVKG-QGIYAFV---TLVEGV-P-YSEELRKSLVLAVRKQIGA 720 (778)
Q Consensus 648 dd~Iki~G~rI~~~eIE~~L~~-~p~V~ea~Vv~~~~~~~~-~~lva~V---v~~~~~-~-~~~~l~~~l~~~l~~~Lp~ 720 (778)
||+||++|+||+|.|||++|.+ ||+|.||+|++++|+..+ +.++||| +++++. . ..+++.+.++++|+++|++
T Consensus 380 ~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~ 459 (499)
T PLN03051 380 DDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNP 459 (499)
T ss_pred CCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcceecccccccchHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999996 999999999999998888 7899999 776653 2 2255667777788888998
Q ss_pred CccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 721 FAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 721 ~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|+.|..|+++++||+|++|||+|++|++.+.+.
T Consensus 460 ~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 492 (499)
T PLN03051 460 LFKVSRVKIVPELPRNASNKLLRRVLRDQLKKE 492 (499)
T ss_pred ccCCceEEEcCCCCCCCCccHHHHHHHHHHHHh
Confidence 877878999999999999999999999887644
|
|
| >PRK07787 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-64 Score=576.24 Aligned_cols=455 Identities=22% Similarity=0.315 Sum_probs=386.5
Q ss_pred cCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCC
Q 004034 213 GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFS 292 (778)
Q Consensus 213 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~ 292 (778)
+.++++|+++. ++++||+||.++++++|..|+ ++|+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 12 ~~~~~~a~~~~------~~~~Ty~el~~~~~~~a~~L~-----~~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~ 80 (471)
T PRK07787 12 AADIADAVRIG------GRVLSRSDLAGAATAVAERVA-----GARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSG 80 (471)
T ss_pred ccCCceEEEeC------CcEEEHHHHHHHHHHHHHHhc-----cCCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCC
Confidence 67899999986 689999999999999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhcc
Q 004034 293 SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372 (778)
Q Consensus 293 ~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l 372 (778)
.+++.+++++++++++++++.... ..+... .+... . ..|.
T Consensus 81 ~~~l~~~l~~~~~~~il~~~~~~~----------------------~~~~~~-~~~~~------~--------~~~~--- 120 (471)
T PRK07787 81 VAERRHILADSGAQAWLGPAPDDP----------------------AGLPHV-PVRLH------A--------RSWH--- 120 (471)
T ss_pred hHHHHHHHHhcCCCEEEecCCccc----------------------ccccce-eeecc------c--------cccc---
Confidence 999999999999999999753110 001000 00000 0 0000
Q ss_pred CCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHH
Q 004034 373 PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPM 452 (778)
Q Consensus 373 ~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L 452 (778)
......++|+++|+|||||||.||||+++|++++.+ .......+++.++|++++.+|+.|..|+...++.++
T Consensus 121 -------~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~g~~~~~~~~l 192 (471)
T PRK07787 121 -------RYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAAD-LDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPL 192 (471)
T ss_pred -------cCCCCCCCceEEEEECCCCCCCCCEEEEeHHHHHHH-HHHHHHhcCCCccceeEeccCCeeechhHHHHHHHH
Confidence 011235789999999999999999999999996544 444455678889999999999999999888899999
Q ss_pred hcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHH
Q 004034 453 LNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNV 532 (778)
Q Consensus 453 ~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 532 (778)
..|+++++.+. +++..+++.++ +++|++.++|+++..|.+... ....++++|.+++||+++++++++++.+.
T Consensus 193 ~~G~~~~~~~~----~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~---~~~~l~~l~~~~~gg~~~~~~~~~~~~~~ 264 (471)
T PRK07787 193 RIGNRFVHTGR----PTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE---AARALRGARLLVSGSAALPVPVFDRLAAL 264 (471)
T ss_pred hcCCEEEecCC----CCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc---ccccccceeEEEECCCCCCHHHHHHHHHH
Confidence 99999998754 48999999999 999999999999999987532 12367899999999999999999999988
Q ss_pred hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeC-CC-eeeEEEEecCCCcccccccC
Q 004034 533 VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIE-GE-CSGYLCIKSSWPGAFRTLYG 610 (778)
Q Consensus 533 ~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~-~g-~~GEL~v~g~~p~v~~gY~~ 610 (778)
++ .++++.||+||++........ ....++++|+|+++++++|+|+++++++ .| +.|||+++| +++++||++
T Consensus 265 ~~---~~~~~~YG~tE~~~~~~~~~~--~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g--~~~~~gy~~ 337 (471)
T PRK07787 265 TG---HRPVERYGMTETLITLSTRAD--GERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRG--PTLFDGYLN 337 (471)
T ss_pred cC---CCeecccCccccCcceecCCC--CcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEEC--cccchhhcC
Confidence 76 679999999999865433221 1345678999999999999999999887 34 489999999 899999999
Q ss_pred ChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeec-CCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeE
Q 004034 611 DHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV-DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 689 (778)
Q Consensus 611 ~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~ 689 (778)
+++.+...|.. +|||+|||+|++++||+++++||+ ||+||++|++|+|.|||++|.+||.|++++|++.++...++.
T Consensus 338 ~~~~t~~~~~~--~~~~~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~ 415 (471)
T PRK07787 338 RPDATAAAFTA--DGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR 415 (471)
T ss_pred ChhhchhcccC--CCceecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeE
Confidence 99988777653 689999999999999999999996 899999999999999999999999999999999998877899
Q ss_pred EEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 690 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 690 lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+++||+..... + .++|+++++++|++|++|..|+++++||+|++||++|++|++
T Consensus 416 ~~a~v~~~~~~--~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~ 469 (471)
T PRK07787 416 IVAYVVGADDV--A---ADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLS 469 (471)
T ss_pred EEEEEEeCCCC--C---HHHHHHHHHhhcccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence 99999984332 2 568999999999999999999999999999999999999976
|
|
| >PLN02430 long-chain-fatty-acid-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-65 Score=601.20 Aligned_cols=531 Identities=18% Similarity=0.214 Sum_probs=399.8
Q ss_pred cccHHHHHHHHhhhccCCCeEEEEEEc---CCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHH
Q 004034 198 ITNICYNCLDRNIEAGLGDKVAIYWEA---NDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274 (778)
Q Consensus 198 ~~n~~~~~l~~~~~~~~pd~~Al~~~~---~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~ 274 (778)
.+++++++|+++++ ++|+++|+.+.. ...+..+.+||+||.++++++|..|+++|+++||+|+|+++|++||++++
T Consensus 40 ~~~t~~~~~~~~~~-~~p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~ew~~~~ 118 (660)
T PLN02430 40 DITTAWDIFSKSVE-KYPDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRASGAEPGSRVGIYGSNCPQWIVAM 118 (660)
T ss_pred CCCCHHHHHHHHHH-hCCCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45678999999998 899999997642 11122356899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 275 LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
|||+++|++++|+++.++++++.+++++++++++|+++... ...+...... .+.++.++.++......
T Consensus 119 lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~--------~~~~~~~~~~----~~~l~~ii~~~~~~~~~ 186 (660)
T PLN02430 119 EACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKI--------KELLEPDCKS----AKRLKAIVSFTSVTEEE 186 (660)
T ss_pred HHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHH--------HHHHhhhccc----CCCceEEEEECCCChHH
Confidence 99999999999999999999999999999999999875421 1111111111 13455666664321100
Q ss_pred cccccCCCCcccchhhccCCCCC-CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH--h--hCCCCC
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--A--FDYKPS 429 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~--~--~~~~~~ 429 (778)
.............|++.+..... ........++|+++|+|||||||.||||+++|++++.+....... . .++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~ 266 (660)
T PLN02430 187 SDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHD 266 (660)
T ss_pred hhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCC
Confidence 00000000012345444322111 111223468999999999999999999999999976544322111 1 256789
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc------cc
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE------YV 503 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~------~~ 503 (778)
|++++++|++|+.+.... +.++..|++++++.. ++..+++.|+++++|++.++|.+++.+.+.... ..
T Consensus 267 d~~ls~lPl~H~~~~~~~-~~~l~~G~~i~~~~~-----~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~ 340 (660)
T PLN02430 267 DVYLSFLPLAHILDRMIE-EYFFRKGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPR 340 (660)
T ss_pred CEEEEeCcHHHHHHHHHH-HHHHHcCCEEEEeCC-----ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHH
Confidence 999999999999886554 457889999988753 567899999999999999999999887642100 00
Q ss_pred -----------------------ccC-------------CC-CceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccccc
Q 004034 504 -----------------------TRY-------------SR-KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ 546 (778)
Q Consensus 504 -----------------------~~~-------------~l-~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~ 546 (778)
... .+ ++||.+++||+++++++.+++. .++ .+++++.||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~~-~~~--~~~i~~~YG~ 417 (660)
T PLN02430 341 RRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFLR-VTS--CAFVVQGYGL 417 (660)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHHH-Hhc--CCCeeeecch
Confidence 000 01 5899999999999999876654 444 2679999999
Q ss_pred ccccceecccCCCCCCCCCCCcCcCcCCceEEEEC--CCC-ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCC
Q 004034 547 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD--EKG-VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (778)
Q Consensus 547 TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd--~~g-~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~ 623 (778)
||+++..+...+.. ...++++|+|+++++++++| +.+ .+++.+..|||+|+| |++++|||++++.+.+.+ .
T Consensus 418 TE~~~~~~~~~~~~-~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg--~~v~~GY~~~~e~t~~~~-~-- 491 (660)
T PLN02430 418 TETLGPTTLGFPDE-MCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRG--KCLFSGYYKNPELTEEVM-K-- 491 (660)
T ss_pred hhhhhceEeecccc-CCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecC--CCccccccCChHHhhhhh-h--
Confidence 99987655443322 23578999999999999986 333 456666789999999 899999999999888776 2
Q ss_pred CCeEEcCcEEEEecCCeEEEEeecCCEEEeC-ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC--
Q 004034 624 PGYYFTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-- 700 (778)
Q Consensus 624 ~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~-G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~-- 700 (778)
+|||+|||+|++|+||+|+|+||+||+||++ |++|+|.+||++|.+||.|.+|+|++. ..++.++|+|++++..
T Consensus 492 dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~~~~V~G~---~~~~~~~A~vv~~~~~~~ 568 (660)
T PLN02430 492 DGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVEDIWVYGD---SFKSMLVAVVVPNEENTN 568 (660)
T ss_pred ccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCeeEEEEEec---CCcceEEEEEEcCHHHHH
Confidence 7999999999999999999999999999985 999999999999999999999999983 2357899999986421
Q ss_pred --------C-------CCHHHHHHHHHHHH-----hhcCCCccccEEEECCC-C-----CCCCCCcccHHHHHHHHhccc
Q 004034 701 --------P-------YSEELRKSLVLAVR-----KQIGAFAAPDKIHWAPG-L-----PKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 701 --------~-------~~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~-l-----P~T~sGKi~R~~L~~~~~~~~ 754 (778)
. ..+++.+.|.+.+. +.|+.|..+++|+++++ | .+|+++|+.|+.+.+.+..++
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i 648 (660)
T PLN02430 569 KWAKDNGFTGSFEELCSLPELKEHILSELKSTAEKNKLRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEI 648 (660)
T ss_pred HHHHhCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHhCCCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHH
Confidence 0 11223333333332 35999999999998764 3 489999999999999999888
Q ss_pred CcCCC
Q 004034 755 DELGD 759 (778)
Q Consensus 755 ~~~~~ 759 (778)
+++++
T Consensus 649 ~~ly~ 653 (660)
T PLN02430 649 DEMYR 653 (660)
T ss_pred HHHHH
Confidence 77663
|
|
| >PRK13391 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-64 Score=578.84 Aligned_cols=501 Identities=24% Similarity=0.336 Sum_probs=407.1
Q ss_pred HhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeC
Q 004034 208 RNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV 287 (778)
Q Consensus 208 ~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl 287 (778)
.+++ ++||++|+++.. .++.+||.||.++++++|++|+++|+++|++|++++++++++++++|||+++|++++|+
T Consensus 5 ~~a~-~~p~~~a~~~~~----~~~~~ty~~l~~~~~~la~~L~~~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l 79 (511)
T PRK13391 5 IHAQ-TTPDKPAVIMAS----TGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCV 79 (511)
T ss_pred hhHh-hCCCceEEEecC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEecc
Confidence 4555 799999998752 25789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccc
Q 004034 288 FAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIW 367 (778)
Q Consensus 288 ~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 367 (778)
++.++.+++.+++++++++++++++... ..+.+....+ ......+.++.... . .....
T Consensus 80 ~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~----~-----~~~~~ 137 (511)
T PRK13391 80 NSHLTPAEAAYIVDDSGARALITSAAKL---------DVARALLKQC----PGVRHRLVLDGDGE----L-----EGFVG 137 (511)
T ss_pred ccccCHHHHHHHHhccCCcEEEEchhhH---------HHHHHHHhcC----CCceEEEEecCCCC----C-----ccccc
Confidence 9999999999999999999999986532 1122222221 22333333332110 0 01112
Q ss_pred hhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEc--cchHHH--HHHHHHHHhhCCCCCcEEEEeCCcchhhh
Q 004034 368 WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHT--TGGYMV--HTATTFKYAFDYKPSDVYWCTADCGWITG 443 (778)
Q Consensus 368 ~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~t--h~~~l~--~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 443 (778)
+.+.....+. ....+.++.++|+|||||||.||||+++ |.+... .........+++.+++++++..|++|..+
T Consensus 138 ~~~~~~~~~~---~~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~h~~~ 214 (511)
T PRK13391 138 YAEAVAGLPA---TPIADESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHSAP 214 (511)
T ss_pred HHHHhcCCCC---CCCCCcccccEEEECCCCCCCCCEEEEccccchhhhhhHHHHHHHHhcCCCCCCeEEEcCCHHHHHH
Confidence 2222221111 1112345679999999999999999964 555321 22333445677888999999999999887
Q ss_pred hhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCH
Q 004034 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (778)
Q Consensus 444 ~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (778)
+ ...+.++..|+++++.+. +++..+++.++++++|++..+|+++..+.+.........+++++|.+++||+++++
T Consensus 215 ~-~~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~ 289 (511)
T PRK13391 215 Q-RAVMLVIRLGGTVIVMEH----FDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPP 289 (511)
T ss_pred H-HHHHHHHHcCceEEECCC----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCH
Confidence 5 455778999999999753 48999999999999999999999999988764433334568899999999999999
Q ss_pred HHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCc
Q 004034 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPG 603 (778)
Q Consensus 524 ~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~ 603 (778)
++++++.+.+| ..+++.||+||++.+....... ....++++|+|+++ .++|+|+++++++.|+.|||+++| +
T Consensus 290 ~~~~~~~~~~g---~~v~~~YG~tE~~~~~~~~~~~-~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g~~Gel~~~g--~- 361 (511)
T PRK13391 290 QVKEQMIDWWG---PIIHEYYAATEGLGFTACDSEE-WLAHPGTVGRAMFG-DLHILDDDGAELPPGEPGTIWFEG--G- 361 (511)
T ss_pred HHHHHHHHHcC---CceeeeeccccccceEEecCcc-ccccCCCcCCcccc-eEEEECCCCCCCCCCCceEEEEec--C-
Confidence 99999999887 5799999999998765433221 23456789999999 699999999999999999999999 7
Q ss_pred ccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEec
Q 004034 604 AFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEH 683 (778)
Q Consensus 604 v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~ 683 (778)
++.||+++++.+...+... +|||+|||++++++||.++++||.||++|++|++|++.|||++|.+||.|.+++|+++++
T Consensus 362 ~~~gy~~~~~~~~~~~~~~-~~w~~TGD~g~~~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~ 440 (511)
T PRK13391 362 RPFEYLNDPAKTAEARHPD-GTWSTVGDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPN 440 (511)
T ss_pred cceEEcCChhHhHHhhccC-CCEEecCCEEEECCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCC
Confidence 8899999998887776542 589999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 684 EVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 684 ~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+..++.+++++++.++...++.+.++|+++++++||.|++|..|++++++|+|++||++|+.|++.+.+
T Consensus 441 ~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~ 509 (511)
T PRK13391 441 EDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG 509 (511)
T ss_pred cccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence 888889999999876654444557899999999999999999999999999999999999999998864
|
|
| >PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-64 Score=576.77 Aligned_cols=494 Identities=19% Similarity=0.255 Sum_probs=411.1
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|++++. .+|+++|++.. ++.+||.||.++++++|..|+++|+++||+|+++++|+.++++++|||+++|
T Consensus 4 ~~~~l~~~a~-~~p~~~~~~~~------~~~~t~~~l~~~~~~~a~~l~~~g~~~~~~v~~~~~~~~~~~~~~~a~~~~G 76 (503)
T PRK04813 4 IIETIEEFAQ-TQPDFPAYDYL------GEKLTYGQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAG 76 (503)
T ss_pred HHHHHHHHHH-hCCCceEEEeC------CcEEeHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 5578888888 89999999876 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++..+++.++++++++.+...... ..+. .+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-~~~~~~~----------- 124 (503)
T PRK04813 77 HAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPLEI--------------------LGIP-VITLDEL----------- 124 (503)
T ss_pred CEEecCCCCChHHHHHHHHHhcCCCEEEecccccccc--------------------cCCc-EEehHHh-----------
Confidence 9999999999999999999999999999987541100 0000 1111100
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
.+...............++++++++|||||||.||||.++|++++.. ..+....+++..++++++..|++|.
T Consensus 125 -------~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~ 196 (503)
T PRK04813 125 -------KDIFATGNPYDFDHAVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSF-TNWMLEDFALPEGPQFLNQAPYSFD 196 (503)
T ss_pred -------hhhhhccccccccccCCCCCcEEEEECCCCCCCCcEEEeehHHHHHH-HHHHHHHcCCCcCceeeecCCcchh
Confidence 00000000111122346788999999999999999999999996554 4444556888899999999999998
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.+ .+.++.+|..|+++++++.. ...++..+++.++++++|++..+|++++.+..... ....+++++|.++++|+++
T Consensus 197 ~~-~~~~~~~l~~g~~~v~~~~~-~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~~~l~~i~~~G~~l 272 (503)
T PRK04813 197 LS-VMDLYPTLASGGTLVALPKD-MTANFKQLFETLPQLPINVWVSTPSFADMCLLDPS--FNEEHLPNLTHFLFCGEEL 272 (503)
T ss_pred Hh-HHHHHHHHhcCCEEEEcChh-hhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhc--cCcccCCCceEEEEecCcC
Confidence 87 56778899999999998753 23488999999999999999999999988765532 2234678999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccC-C-C-CCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-P-G-AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~-~-~-~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++.+++++.+.++ ++.+++.||+||++...+... . . .......++|+|.++++++|+|+++.+++.|+.|||+++
T Consensus 273 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~ 350 (503)
T PRK04813 273 PHKTAKKLLERFP--SATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVIS 350 (503)
T ss_pred CHHHHHHHHHHCC--CceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEe
Confidence 9999999999985 478999999999976443211 1 1 112445679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCC-CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKP-FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~-~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
| +.++.||+++++.+...|+.. ..+||+|||++++ +||++++.||.||+||++|++|+|.|||++|.+||+|.+++
T Consensus 351 ~--~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~ 427 (503)
T PRK04813 351 G--PSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAV 427 (503)
T ss_pred c--cccccccCCChhHhHHhhccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEE
Confidence 9 899999999999888877642 2359999999999 99999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|++.++...++.++++|++.++. ....++.++++++++++++.+++|..|+++++||+|+|||++|++|++.++
T Consensus 428 v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~ 502 (503)
T PRK04813 428 VVPYNKDHKVQYLIAYVVPKEEDFEREFELTKAIKKELKERLMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN 502 (503)
T ss_pred EEEeeCCCCccEEEEEEEeccccccccchhHHHHHHHHHhhCccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence 99988777778899999987642 222355678999999999999999999999999999999999999999875
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-65 Score=639.77 Aligned_cols=507 Identities=23% Similarity=0.255 Sum_probs=410.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|++... ++++||+||+++++++|+.|++ ++++||+|+++++|++|+++++|||+++
T Consensus 616 ~l~~~~~~~a~-~~p~~~a~~~~~-----~~~~Ty~el~~~~~~~a~~L~~-~~~~g~~V~i~~~n~~~~~~~~la~~~~ 688 (1146)
T PRK08633 616 PLAEAWIDTAK-RNWSRLAVADST-----GGELSYGKALTGALALARLLKR-ELKDEENVGILLPPSVAGALANLALLLA 688 (1146)
T ss_pred CHHHHHHHHHH-hcCCCcEEEcCC-----CCcCcHHHHHHHHHHHHHHHHH-hCCCCCeEEEECCCchHHHHHHHHHHHc
Confidence 46788888888 899999998531 4689999999999999999987 4899999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHH--HHHHhhcCCCccEEEEEccCCccccccc
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAA--LDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
|++++|++|.++.+++.+++++++++++++++.... .+.+. .... +....++..++...
T Consensus 689 G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~------ 749 (1146)
T PRK08633 689 GKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLE---------KLKNKGFDLEL----PENVKVIYLEDLKA------ 749 (1146)
T ss_pred CCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHH---------HHhccCCchhc----ccCceEEEeehhcc------
Confidence 999999999999999999999999999999765321 11100 0001 11223333332110
Q ss_pred cCCCCcccchhhccCCC--CC----CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEE
Q 004034 359 KWQDGRDIWWQDVVPKY--PT----KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~--~~----~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~ 432 (778)
... ....+.+..... +. ........++|+++|+|||||||.||||+++|++++.+ .......+++.++|++
T Consensus 750 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~d~~ 826 (1146)
T PRK08633 750 KIS--KVDKLTALLAARLLPARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSN-IEQISDVFNLRNDDVI 826 (1146)
T ss_pred ccc--hhHHHHHHHHhccCCHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHH-HHHHHHhcCCCCCCEE
Confidence 000 000011111000 00 00013456799999999999999999999999996544 4445567888999999
Q ss_pred EEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCcee
Q 004034 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512 (778)
Q Consensus 433 l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr 512 (778)
++.+|+.|..++...++.+++.|+++++.+.. .+++.+++.++++++|++.++|++++.+.+... ....+++++|
T Consensus 827 l~~~p~~h~~g~~~~~~~~l~~g~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr 901 (1146)
T PRK08633 827 LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDP---TDALGIAKLVAKHRATILLGTPTFLRLYLRNKK--LHPLMFASLR 901 (1146)
T ss_pred EEcCcHHHHHhHHHHHHHHHHCCCEEEEeCCC---CCHHHHHHHHHHcCCeEEEecHHHHHHHHhccc--cCcccCCCee
Confidence 99999999999877788999999999987532 488999999999999999999999999987543 2345778999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC--------CCCCCCCcCcCcCCceEEEECC-C
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--------WPQKPGSATFPFFGVQPVIVDE-K 583 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~--------~~~~~~~~G~p~~g~~~~Ivd~-~ 583 (778)
.+++|||++++++.+++.+.++ +++++.||+||++++.+...+.. ...+++++|+|++|++++|+|+ +
T Consensus 902 ~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~ 978 (1146)
T PRK08633 902 LVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPET 978 (1146)
T ss_pred eEEEcCCcCCHHHHHHHHHHhC---CCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCC
Confidence 9999999999999999999886 68999999999987655432211 1235678999999999999995 6
Q ss_pred CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHH
Q 004034 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAE 662 (778)
Q Consensus 584 g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~e 662 (778)
+++++.|+.|||+|+| |.+++||+++++.+.+.+.. +.+|||+|||+|++|+||+++++||.||+||++|++|+|.|
T Consensus 979 ~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~e 1056 (1146)
T PRK08633 979 FEELPPGEDGLILIGG--PQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGA 1056 (1146)
T ss_pred CccCCCCCceEEEEcC--CCccccccCCccchHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHH
Confidence 8999999999999999 89999999999888776542 23479999999999999999999999999999999999999
Q ss_pred HHHHHhcCC--ccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCC
Q 004034 663 VESALVSHP--QCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSG 739 (778)
Q Consensus 663 IE~~L~~~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sG 739 (778)
||++|.+|| .+.+++|++++|+..++.++++++... .+ .+++++++++ .+|+|++|..++++++||+|++|
T Consensus 1057 iE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~~---~~---~~~l~~~~~~~~l~~~~~P~~i~~~~~iP~t~~G 1130 (1146)
T PRK08633 1057 VEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCGA---ED---VEELKRAIKESGLPNLWKPSRYFKVEALPLLGSG 1130 (1146)
T ss_pred HHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecCc---cC---HHHHHHHHHhcCCCcccCCcEEEEecCcCCCCCC
Confidence 999999999 567899999999988999999998631 12 4678888875 69999999999999999999999
Q ss_pred cccHHHHHHHHhc
Q 004034 740 KIMRRILRKIASR 752 (778)
Q Consensus 740 Ki~R~~L~~~~~~ 752 (778)
|+||++|+++..+
T Consensus 1131 Ki~r~~L~~~~~~ 1143 (1146)
T PRK08633 1131 KLDLKGLKELALA 1143 (1146)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998653
|
|
| >PTZ00216 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-65 Score=604.46 Aligned_cols=520 Identities=19% Similarity=0.238 Sum_probs=387.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcC-----------C----------CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCE
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAN-----------D----------PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~-----------~----------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~ 259 (778)
+++++|.++++ ++||++|+.+... . .+..+.+||+||.++++++|+.|+++|+++||+
T Consensus 70 t~~~~~~~~~~-~~p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~~Gv~~gd~ 148 (700)
T PTZ00216 70 NFLQRLERICK-ERGDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAELGLTKGSN 148 (700)
T ss_pred CHHHHHHHHHH-hCCCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 58899999999 9999999998421 0 023689999999999999999999999999999
Q ss_pred EEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCC
Q 004034 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGI 339 (778)
Q Consensus 260 Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (778)
|+|+++|++||++++|||+++|++++|+++.++++++.++|++++++++|++.... ............
T Consensus 149 V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~------------~~l~~~~~~~~~ 216 (700)
T PTZ00216 149 VAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNV------------PNLLRLMKSGGM 216 (700)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHH------------HHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999975421 111111110001
Q ss_pred CccEEEEEccCCccccccccCCCCcccchhhccCCC----CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHH
Q 004034 340 SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY----PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415 (778)
Q Consensus 340 ~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~ 415 (778)
....++.++.... ...........|.+.+... ..........++|+++|+|||||||.||||+++|+|++.+
T Consensus 217 ~~~~ii~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~ 292 (700)
T PTZ00216 217 PNTTIIYLDSLPA----SVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAG 292 (700)
T ss_pred CceEEEEECCCcc----ccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHH
Confidence 1123454443211 0000011123454443322 1111123456899999999999999999999999996554
Q ss_pred HHHHHHHhh----C-CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHH-------HHHHhCcc
Q 004034 416 TATTFKYAF----D-YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD-------IVDKYKVT 483 (778)
Q Consensus 416 ~~~~~~~~~----~-~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~-------~i~~~~vT 483 (778)
... ....+ + +.++|++++++|++|+++... .+..+..|+++++. ++..+++ .++++++|
T Consensus 293 ~~~-~~~~~~~~~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~l~~~~pT 363 (700)
T PTZ00216 293 ILA-LEDRLNDLIGPPEEDETYCSYLPLAHIMEFGV-TNIFLARGALIGFG-------SPRTLTDTFARPHGDLTEFRPV 363 (700)
T ss_pred HHH-HHhhcccccCCCCCCCEEEEEChHHHHHHHHH-HHHHHHcCCEEEEC-------CHHHhhhhhccccchHHHcCCc
Confidence 332 22222 2 467899999999999887543 34457778776552 3444444 68899999
Q ss_pred EEEecHHHHHHHHhcCCccc-----------------------c----------------cCCCCceeEEEEecCCCCHH
Q 004034 484 IFYTAPTLVRSLMRDGNEYV-----------------------T----------------RYSRKSLRVLGSVGEPINPS 524 (778)
Q Consensus 484 ~l~~~Ps~l~~L~~~~~~~~-----------------------~----------------~~~l~sLr~v~~gGe~l~~~ 524 (778)
++.++|++++.|.+...... . ....++||.+++||++++++
T Consensus 364 ~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~ 443 (700)
T PTZ00216 364 FLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAA 443 (700)
T ss_pred EEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHH
Confidence 99999999988764311000 0 00015899999999999999
Q ss_pred HHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCc--eeCCCeeeEEEEecCCC
Q 004034 525 AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGV--EIEGECSGYLCIKSSWP 602 (778)
Q Consensus 525 ~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~--~~~~g~~GEL~v~g~~p 602 (778)
+.+++...++ ++++.||+||+++..+....+ ...++++|+|++|++++|+|+++. ..+++..|||+|+| |
T Consensus 444 ~~~~~~~~~~----~l~~~YG~TEt~~~~~~~~~~--~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG--~ 515 (700)
T PTZ00216 444 TQEFVNVVFG----MVIQGWGLTETVCCGGIQRTG--DLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRG--P 515 (700)
T ss_pred HHHHHHHHhh----hHhhccCcccccccccccCCC--CCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcC--C
Confidence 9988776653 699999999998765443332 245789999999999999997642 34556679999999 8
Q ss_pred cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEE-eCceeeCHHHHHHHHhcCCccceE--EEE
Q 004034 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN-VSGHRIGTAEVESALVSHPQCAEA--AVV 679 (778)
Q Consensus 603 ~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Ik-i~G~rI~~~eIE~~L~~~p~V~ea--~Vv 679 (778)
++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+|| .+|++|+|.|||++|.+||.|.++ +|+
T Consensus 516 ~v~~GY~~~pe~T~~~f~~--dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~ 593 (700)
T PTZ00216 516 FLFKGYYKQEELTREVLDE--DGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVL 593 (700)
T ss_pred cccchhcCChhHhhhhccc--cCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEE
Confidence 9999999999999888754 68999999999999999999999999999 789999999999999999999974 344
Q ss_pred EEecCCCCeEEEEEEEEcCC----------CC-------CCHHHHHHHHHHHH-----hhcCCCccccEEEECCC-----
Q 004034 680 GVEHEVKGQGIYAFVTLVEG----------VP-------YSEELRKSLVLAVR-----KQIGAFAAPDKIHWAPG----- 732 (778)
Q Consensus 680 ~~~~~~~~~~lva~Vv~~~~----------~~-------~~~~l~~~l~~~l~-----~~Lp~~~~P~~i~~v~~----- 732 (778)
+.+ ....++|+|++... .. .++++.+.+.+.+. +.+..|..++.|+++++
T Consensus 594 ~~~---~~~~l~a~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~e~i~~~~~~~~~f~~~ 670 (700)
T PTZ00216 594 VHP---ARSYICALVLTDEAKAMAFAKEHGIEGEYPAILKDPEFQKKATESLQETARAAGRKSFEIVRHVRVLSDEWTPE 670 (700)
T ss_pred Eec---CCceEEEEEecCHHHHHHHHHHcCCCCCHHHHhcCHHHHHHHHHHHHHHHHhcCCCCceeEeEEEEECCCCCCC
Confidence 332 23678999987531 00 01223333333332 35888999999998753
Q ss_pred -CCCCCCCcccHHHHHHHHhcccCcCCC
Q 004034 733 -LPKTRSGKIMRRILRKIASRQLDELGD 759 (778)
Q Consensus 733 -lP~T~sGKi~R~~L~~~~~~~~~~~~~ 759 (778)
=-+|+++|+.|+.+.+.+..++++++.
T Consensus 671 ~g~lT~t~K~~R~~i~~~y~~~i~~ly~ 698 (700)
T PTZ00216 671 NGVLTAAMKLKRRVIDERYADLIKELFA 698 (700)
T ss_pred CCCCChhhccchHHHHHHHHHHHHHHhc
Confidence 246999999999999999988877653
|
|
| >PRK08180 feruloyl-CoA synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-64 Score=595.01 Aligned_cols=516 Identities=18% Similarity=0.186 Sum_probs=395.3
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+.. +..+++||+||.++++++|++|.++|+++||+|+|+++|++|+++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~a~~~~~~~-~~~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~Vai~~~n~~e~~~~~lA~~~~ 117 (614)
T PRK08180 40 RLTDRLVHWAQ-EAPDRVFLAERGAD-GGWRRLTYAEALERVRAIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYA 117 (614)
T ss_pred cHHHHHHHHHH-HCCCCceeeeccCC-CceeEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 47788999998 89999999875211 23578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCC-----HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccc
Q 004034 281 GAVHSVVFAGFS-----SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (778)
Q Consensus 281 Gav~vpl~p~~~-----~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (778)
|++++|++|.++ .+++.+++++++++++|+++... ....+.... .....++..+...
T Consensus 118 Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~-----------~~~~~~~~~---~~~~~~i~~~~~~---- 179 (614)
T PRK08180 118 GVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAA-----------FARALAAVV---PADVEVVAVRGAV---- 179 (614)
T ss_pred CCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHH-----------HHHHHhhhc---cCCceEEEecCCC----
Confidence 999999999998 79999999999999999875321 111111110 1111222222110
Q ss_pred ccccCCCCcccchhhccCCCCC---CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCC--CCc
Q 004034 356 ENTKWQDGRDIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYK--PSD 430 (778)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~--~~d 430 (778)
.......|.+.+..... ..+.....++|+++|+|||||||.||||+++|++++.+.. .....+++. .++
T Consensus 180 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~ 253 (614)
T PRK08180 180 -----PGRAATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQ-MLAQTFPFLAEEPP 253 (614)
T ss_pred -----CCcccccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHH-HHHhhccccCCCCc
Confidence 00001234433322111 1112234679999999999999999999999999654433 333445543 568
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc--ccccCCC
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTRYSR 508 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~--~~~~~~l 508 (778)
++++++|++|..++...++.+|..|+++++.++.........+++.++++++|+++++|++++.|++.... .....++
T Consensus 254 ~~l~~lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~ 333 (614)
T PRK08180 254 VLVDWLPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFF 333 (614)
T ss_pred EEEEecchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhc
Confidence 99999999999987778889999999999976432212345788899999999999999999998864221 1123457
Q ss_pred CceeEEEEecCCCCHHHHHHHHHH----hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCC
Q 004034 509 KSLRVLGSVGEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (778)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~----~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g 584 (778)
++||.+++||+++++++++++.+. +|. ++++++.||+||++.+++..... ...++++|+|++|++++|+|+.
T Consensus 334 ~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~d~~- 409 (614)
T PRK08180 334 SRLKLLFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSATFTTGP--LSRAGNIGLPAPGCEVKLVPVG- 409 (614)
T ss_pred cceeEEEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceEecccc--cCCCCcccCccCCcEEEEecCC-
Confidence 899999999999999999998875 332 36899999999998655433222 2467899999999999999853
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEE----ecCCeEEEEeecCCEEEeC-ceeeC
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR----DKDGYHWLTGRVDDVINVS-GHRIG 659 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~----~~dG~l~~~GR~dd~Iki~-G~rI~ 659 (778)
..|||+|+| |+++.|||++++.+.+.|.. +|||+|||+|++ |+||+|+|+||+||+||++ |++|+
T Consensus 410 ------~~GEi~vrg--~~v~~GY~~~p~~t~~~~~~--dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~ 479 (614)
T PRK08180 410 ------GKLEVRVKG--PNVTPGYWRAPELTAEAFDE--EGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVS 479 (614)
T ss_pred ------CCcEEEEec--CccchhhcCChhHhHhhccc--CCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEec
Confidence 369999999 89999999999988776643 789999999999 5689999999999999974 98776
Q ss_pred --HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCC---------C--CHH-HHHHHHHHHHhhcCCCc---
Q 004034 660 --TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP---------Y--SEE-LRKSLVLAVRKQIGAFA--- 722 (778)
Q Consensus 660 --~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~---------~--~~~-l~~~l~~~l~~~Lp~~~--- 722 (778)
+.|||.++.+||.|.||+|++.+++ .+.|+|+++++.. . .+. ..++|++++++.|..|.
T Consensus 480 ~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 555 (614)
T PRK08180 480 VGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLDACRRLAGLLADASLAEVLAHPAVRAAFRERLARLNAQA 555 (614)
T ss_pred chhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHHHHHHHHhhcccCCHHHHhcCHHHHHHHHHHHHHHHhhc
Confidence 7899999999999999999998764 4779998865410 0 000 12456666666666555
Q ss_pred -----cccEEEECCCCCCCC------CCcccHHHHHHHHhcccCcCCCC
Q 004034 723 -----APDKIHWAPGLPKTR------SGKIMRRILRKIASRQLDELGDT 760 (778)
Q Consensus 723 -----~P~~i~~v~~lP~T~------sGKi~R~~L~~~~~~~~~~~~~~ 760 (778)
+|+++++++++|+|+ +||+.|+++.+.+.++++++++.
T Consensus 556 ~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~~lY~~ 604 (614)
T PRK08180 556 TGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVEALYAD 604 (614)
T ss_pred cccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHHHHhCC
Confidence 899999999999865 55889999999999999888763
|
|
| >PRK07798 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=572.46 Aligned_cols=508 Identities=23% Similarity=0.299 Sum_probs=403.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++||++|+++. .+.+||.||+++++++|+.|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 5 l~~~~~~~a~-~~p~~~a~~~~------~~~~ty~el~~~~~~la~~L~~~g~~~~~~v~v~~~n~~~~~~~~~a~~~~G 77 (533)
T PRK07798 5 IADLFEAVAD-AVPDRVALVCG------DRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKAR 77 (533)
T ss_pred HHHHHHHHHH-hCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence 6788999998 89999999986 6899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|+++.++.+++.+++++++++++++++... ..+.+....+ +....++.++.... ....
T Consensus 78 ~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~ 139 (533)
T PRK07798 78 AVPVNVNYRYVEDELRYLLDDSDAVALVYEREFA---------PRVAEVLPRL----PKLRTLVVVEDGSG-----NDLL 139 (533)
T ss_pred eEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhH---------HHHHHHhccC----CCccEEEEecCCcc-----cccC
Confidence 9999999999999999999999999999976432 2222221111 33444555543221 0000
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH--------hhCC------C
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--------AFDY------K 427 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~--------~~~~------~ 427 (778)
...+.|.+.+........... ...+.++|+|||||||.||||+++|++++......... ...+ .
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (533)
T PRK07798 140 -PGAVDYEDALAAGSPERDFGE-RSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAG 217 (533)
T ss_pred -CccccHHHHHhccCCcCCCCC-CCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCC
Confidence 012334444433222222212 23455799999999999999999999965433221111 1111 5
Q ss_pred CCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHH-HHHhcCCcccccC
Q 004034 428 PSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR-SLMRDGNEYVTRY 506 (778)
Q Consensus 428 ~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~-~L~~~~~~~~~~~ 506 (778)
.+++++..+|+.|..++ +.++.+|+.|+++++.+.. .+++..+++.++++++|.+.++|..+. .+..... .....
T Consensus 218 ~~~~~~~~~pl~~~~~~-~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~-~~~~~ 293 (533)
T PRK07798 218 PGMRRFPAPPLMHGAGQ-WAAFAALFSGQTVVLLPDV--RFDADEVWRTIEREKVNVITIVGDAMARPLLDALE-ARGPY 293 (533)
T ss_pred CCceEEEecchhhhhhH-HHHHHHHhcCceEEEecCC--CcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhc-ccccC
Confidence 67899999999999985 5788999999999998743 358999999999999999999986553 3333221 11234
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcC--cCcCCceEEEECCCC
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSAT--FPFFGVQPVIVDEKG 584 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G--~p~~g~~~~Ivd~~g 584 (778)
+++++|.+++||+++++++.+++.+.++ ++.+++.||+||++.+...... . .....| ++.++..++|+|+++
T Consensus 294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~-~---~~~~~g~~~~~~~~~~~i~~~~~ 367 (533)
T PRK07798 294 DLSSLFAIASGGALFSPSVKEALLELLP--NVVLTDSIGSSETGFGGSGTVA-K---GAVHTGGPRFTIGPRTVVLDEDG 367 (533)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccccccCCC-C---CCccCCCCccCCCceEEEECCCC
Confidence 6789999999999999999999999885 4789999999999754442211 1 112233 788999999999999
Q ss_pred ceeCCCee--eEEEEecCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHH
Q 004034 585 VEIEGECS--GYLCIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661 (778)
Q Consensus 585 ~~~~~g~~--GEL~v~g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~ 661 (778)
++++.|+. |+|+. + +.++.||+++++.+...|.. +..+||+|||++++|+||+++++||.||+||++|++|+|.
T Consensus 368 ~~~~~g~~~~g~l~~-~--~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~ 444 (533)
T PRK07798 368 NPVEPGSGEIGWIAR-R--GHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPE 444 (533)
T ss_pred CCCCCCCCCeeEEEe-e--cCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCCcEEEEccccceEecCCEEeCHH
Confidence 99999877 77765 4 47899999999888777643 2345999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcc
Q 004034 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741 (778)
Q Consensus 662 eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi 741 (778)
|||++|.++|.|.+++|++++++..++.++++|+++++...+ .++|+++++++|+.|++|..++++++||+|++||+
T Consensus 445 eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~ 521 (533)
T PRK07798 445 EVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPD---LAELRAHCRSSLAGYKVPRAIWFVDEVQRSPAGKA 521 (533)
T ss_pred HHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCC---HHHHHHHHhhhcccCCCCeEEEEcccCCCCCcchh
Confidence 999999999999999999998887788999999988665433 57899999999999999999999999999999999
Q ss_pred cHHHHHHHHhc
Q 004034 742 MRRILRKIASR 752 (778)
Q Consensus 742 ~R~~L~~~~~~ 752 (778)
+|+.|+++.++
T Consensus 522 ~~~~~~~~~~~ 532 (533)
T PRK07798 522 DYRWAKEQAAE 532 (533)
T ss_pred hHHHHhhhhcc
Confidence 99999998864
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-63 Score=608.76 Aligned_cols=528 Identities=19% Similarity=0.197 Sum_probs=394.6
Q ss_pred HHHHHHHhhCHHHHHHHHHhh----cccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEE
Q 004034 146 LEMYKRSVEDPAGFWADIASE----FYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (778)
Q Consensus 146 ~~ll~~~~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~ 221 (778)
.+-+..++.+|++...+++.+ +.-...+++ + . ....+ ++.++|+++++ ++||++|++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~---------~~~~~-sl~~ll~~~a~-~~pd~~Al~ 467 (994)
T PRK07868 407 ARGAADAAVAANRSVRTLAVETARTLPRLARLGQ-I-------N---------DHTRI-SLGRIIAEQAR-DAPKGEFLL 467 (994)
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHhhhhHHHhhh-c-------C---------CCCCc-cHHHHHHHHHH-HCCCCeEEE
Confidence 344567778899999888531 111112221 0 0 00111 47889999998 899999999
Q ss_pred EEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHH
Q 004034 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (778)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~ 301 (778)
+. ++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|++|. +++.++++
T Consensus 468 ~~------~~~lTY~eL~~ra~rlA~~L~~~Gv~~Gd~VaI~~~n~~e~v~a~lA~~~aGav~vpl~p~---~~l~~il~ 538 (994)
T PRK07868 468 FD------GRVHTYEAVNRRINNVVRGLIAVGVRQGDRVGVLMETRPSALVAIAALSRLGAVAVLMPPD---TDLAAAVR 538 (994)
T ss_pred eC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---hhHHHHHh
Confidence 86 5789999999999999999999999999999999999999999999999999999999985 68999999
Q ss_pred hcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCC-CcccchhhccCCC---CC
Q 004034 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD-GRDIWWQDVVPKY---PT 377 (778)
Q Consensus 302 ~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---~~ 377 (778)
++++++||+++... ... ..+ ...+++++..... ...... .....+.+..... +.
T Consensus 539 ~s~~~~li~~~~~~------------~~~-~~~------~~~iiv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (994)
T PRK07868 539 LGGVTEIITDPTNL------------EAA-RQL------PGRVLVLGGGESR---DLDLPDDADVIDMEKIDPDAVELPG 596 (994)
T ss_pred ccCCeEEEEChHHH------------HHH-Hhc------CceEEEecCCccc---cccCCcchhhhhhhhcCcccccCCc
Confidence 99999999975432 111 111 1234444321100 000000 0011111111100 00
Q ss_pred CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcE
Q 004034 378 KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGAS 457 (778)
Q Consensus 378 ~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~t 457 (778)
..+.....++|++||+|| ||||.||++.++|.++.... ......+++.++|++++.+|++|+.++...++.++..|++
T Consensus 597 ~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~-~~~~~~~~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~ 674 (994)
T PRK07868 597 WYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSA-FGTASAAALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSR 674 (994)
T ss_pred ccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHH-HhhhhhcCCCCCCeEEEecChHHHhHHHHHHHHHhccceE
Confidence 011122246899999999 57777777777777654433 2334467888999999999999999865555555555555
Q ss_pred EEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCC
Q 004034 458 VVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537 (778)
Q Consensus 458 lvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~ 537 (778)
+++.+. ++++.+++.|++++||+++++|++++.|++... ....++++||.++ |+.+++++++++.+.++ .
T Consensus 675 vvl~~~----~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~--~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~--~ 744 (994)
T PRK07868 675 IALSRG----LDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPA--FVLHGNHPVRLFI--GSGMPTGLWERVVEAFA--P 744 (994)
T ss_pred EEecCC----CCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcC--CccCCCCceEEEe--cCCCCHHHHHHHHHHhC--c
Confidence 555432 589999999999999999999999999987643 2234677899876 44599999999999987 3
Q ss_pred cceecccccccccceecccCCCCCCCCCCCcCcCcCCc-eEEEE-----------CCCC--ceeCCCeeeEEEEecCCCc
Q 004034 538 CPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIV-----------DEKG--VEIEGECSGYLCIKSSWPG 603 (778)
Q Consensus 538 ~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~-~~~Iv-----------d~~g--~~~~~g~~GEL~v~g~~p~ 603 (778)
+++++.||+||++.+.. ... ..+++++|+|++|+ +++|. |++| ++++.|+.|||++++ +.
T Consensus 745 ~~l~~~YG~TE~~~~~~-~~~---~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~--~~ 818 (994)
T PRK07868 745 AHVVEFFATTDGQAVLA-NVS---GAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARA--RG 818 (994)
T ss_pred hheeeeeeccccccccc-ccC---CCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEec--CC
Confidence 78999999999875433 221 23568999999997 55543 5566 678899999999999 43
Q ss_pred ccccccCChhhhh-hhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEe
Q 004034 604 AFRTLYGDHERYE-TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682 (778)
Q Consensus 604 v~~gY~~~~~~~~-~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 682 (778)
|+ +++.+. ..+|.+.+|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||+|.+|+|++++
T Consensus 819 ----~~-~p~~t~~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~ 893 (994)
T PRK07868 819 ----PI-DPTASVKRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVE 893 (994)
T ss_pred ----CC-ChhhhhHhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeec
Confidence 23 344322 223443478999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 683 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
++. ++.++|||+++++...+ .++|++++++ +|.||+|+.|+++++||+|+||||+|++|++...
T Consensus 894 d~~-~~~~~a~Vv~~~~~~~~---~~~L~~~l~~-l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l 957 (994)
T PRK07868 894 VGG-RQLAVAAVTLRPGAAIT---AADLTEALAS-LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI 957 (994)
T ss_pred CCC-CceEEEEEEeCCCCcCC---HHHHHHHHHh-CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence 875 67899999988765444 5689999986 9999999999999999999999999999987643
|
|
| >PRK08276 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=569.65 Aligned_cols=483 Identities=26% Similarity=0.350 Sum_probs=397.3
Q ss_pred ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEE
Q 004034 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (778)
Q Consensus 230 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~ii 309 (778)
++.+||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++++++++++
T Consensus 9 ~~~~ty~el~~~v~~~a~~L~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~ii 88 (502)
T PRK08276 9 GEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKVLI 88 (502)
T ss_pred CcEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccCCcccchHHHHHHHHHHHhhcCC-CccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCC
Q 004034 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGI-SVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388 (778)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d 388 (778)
+++... ..+.+..+.. . .++.+++.+... .....|.+....... ......++
T Consensus 89 ~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~---~~~~~~~~ 141 (502)
T PRK08276 89 VSAALA---------DTAAELAAEL----PAGVPLLLVVAGPV-----------PGFRSYEEALAAQPD---TPIADETA 141 (502)
T ss_pred Eccchh---------hHHHHHhhhc----cccccEEEEeCCCC-----------CccccHHHHHhcCCC---CCCCCCCc
Confidence 986542 1122221211 1 334444332110 011123322222111 11234577
Q ss_pred cEEEEeCCCCCCCCceEEEccchHHHHHH-----HHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcC
Q 004034 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTA-----TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (778)
Q Consensus 389 ~a~Il~TSGSTG~PKgV~~th~~~l~~~~-----~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~ 463 (778)
+++|+|||||||.||||+++|.++..... ......+....++++++..|++|..++.+ .+.++..|+++++.+.
T Consensus 142 ~a~i~~TSGtTG~PK~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~ 220 (502)
T PRK08276 142 GADMLYSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEK 220 (502)
T ss_pred ceEEEECCCCCCCCceEEEccCCcchhhhhHHhhhhhhhcccCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCC
Confidence 89999999999999999999887543221 11111222346789999999999887544 4578999999988754
Q ss_pred CCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecc
Q 004034 464 APTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDT 543 (778)
Q Consensus 464 ~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~ 543 (778)
+++..+++.++++++|++.++|++++.+++.........+++++|.++++||+++.++++++.+.++ .++++.
T Consensus 221 ----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~---~~~~~~ 293 (502)
T PRK08276 221 ----FDAEEALALIERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWG---PIIHEY 293 (502)
T ss_pred ----CCHHHHHHHHHHhCCeEEEehHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhC---cHhhhh
Confidence 4899999999999999999999999999887654344567899999999999999999999999886 579999
Q ss_pred cccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCC
Q 004034 544 WWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (778)
Q Consensus 544 YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~ 623 (778)
||+||++.+++..... ....++++|+|+ ++.++|+|+++++++.|+.|||+++| +.++.||+++++.+...+..
T Consensus 294 yG~tE~~~~~~~~~~~-~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~-- 367 (502)
T PRK08276 294 YASSEGGGVTVITSED-WLAHPGSVGKAV-LGEVRILDEDGNELPPGEIGTVYFEM--DGYPFEYHNDPEKTAAARNP-- 367 (502)
T ss_pred cccccccceeEecCcc-ccccCCCcceec-ccEEEEECCCCCCCcCCCceEEEEEC--CCccchhcCCHHHHHHHhcC--
Confidence 9999999755543321 234567899999 88999999999999999999999999 78899999999888887764
Q ss_pred CCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCC
Q 004034 624 PGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS 703 (778)
Q Consensus 624 ~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~ 703 (778)
+|||+|||++++++||.+++.||.||++|++|++|++.|||.+|.+||+|.+++|+++.++..++.++++|+++++...+
T Consensus 368 ~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~ 447 (502)
T PRK08276 368 HGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAG 447 (502)
T ss_pred CCceeecceEEEcCCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999888889999999998765555
Q ss_pred HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 704 EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 704 ~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+++.++++++++++|+.+++|..++++++||+|++||++|+.|++.+...
T Consensus 448 ~~~~~~i~~~~~~~l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~ 497 (502)
T PRK08276 448 DALAAELIAWLRGRLAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG 497 (502)
T ss_pred hhhHHHHHHHHHhhccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence 55667899999999999999999999999999999999999999997643
|
|
| >PLN02479 acetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-63 Score=577.05 Aligned_cols=518 Identities=20% Similarity=0.266 Sum_probs=399.2
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
.+..|+++++ .+|+++|+++. .+++||+||+++++++|..|.+.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~~~~-~~p~~~a~~~~------~~~~ty~eL~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~la~~~~G 94 (567)
T PLN02479 22 PLWFLERAAV-VHPTRKSVVHG------SVRYTWAQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAG 94 (567)
T ss_pred HHHHHHHHHh-hCCCceEEEEC------CceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhCC
Confidence 5677888888 89999999875 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhc---CCCccEEEEEccCCccccccc
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKS---GISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vi~~~~~~~~~~~~~ 358 (778)
++++|++|.++.+++.+++++++++++|+++... +...++...+... ......++.+...........
T Consensus 95 ~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (567)
T PLN02479 95 AVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFF---------TLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQ 165 (567)
T ss_pred cEEEEeccccCHHHHHHHHhhcCceEEEEchhhh---------hHHHHHHHHHhhcccccCCCceEEEecCCcCCccccc
Confidence 9999999999999999999999999999987542 1122222221100 011123333332110000000
Q ss_pred cCCCCcccchhhccCCCCCCCC-ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 437 (778)
.....+...|.+.+........ ......+++++|+|||||||.||||+++|++++... ......+++.+++++++.+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~-~~~~~~~~~~~~~~~~~~~p 244 (567)
T PLN02479 166 YALGKGAIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMA-LSNALIWGMNEGAVYLWTLP 244 (567)
T ss_pred cccccCcccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHH-HHHHhhcCCCCCCEEEEecc
Confidence 0001123345444433211111 112234578889999999999999999999954433 23334677888999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|..+....++.+++.|.++++. . +++..+++.++++++|++..+|++++.|.+.... ....++++++.++++
T Consensus 245 ~~h~~~~~~~~~~~~~~g~~~~~~-~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~l~~~~~~ 318 (567)
T PLN02479 245 MFHCNGWCFTWTLAALCGTNICLR-Q----VTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKS-ETILPLPRVVHVMTA 318 (567)
T ss_pred hhhhhhHHHHHHHHhhcCceEecc-C----CCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhh-cccccccceeEEEEc
Confidence 999988655544456666665543 2 5899999999999999999999999999876431 111256899999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccC-CC-------C-CCCCCCCcCcCcCCce-EEEEC-CCCce
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PG-------A-WPQKPGSATFPFFGVQ-PVIVD-EKGVE 586 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~-~~-------~-~~~~~~~~G~p~~g~~-~~Ivd-~~g~~ 586 (778)
|+++++.+++++.+. + .++++.||+||+++..+... .. . ........|.+.+++. ++|+| +++++
T Consensus 319 G~~~~~~~~~~~~~~-~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~ 394 (567)
T PLN02479 319 GAAPPPSVLFAMSEK-G---FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKP 394 (567)
T ss_pred CCCCCHHHHHHHHhc-C---CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcc
Confidence 999999999988764 4 68999999999865332111 00 0 0011235688888876 88998 46888
Q ss_pred eCCC--eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHH
Q 004034 587 IEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVE 664 (778)
Q Consensus 587 ~~~g--~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE 664 (778)
++.+ +.|||+++| +++++|||++++.+.+.|. +|||+|||++++|++|+++|+||.||+||++|++|+|.|||
T Consensus 395 ~~~~g~~~GEl~v~g--~~~~~GY~~~~~~t~~~~~---~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE 469 (567)
T PLN02479 395 VPADGKTMGEIVMRG--NMVMKGYLKNPKANEEAFA---NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVE 469 (567)
T ss_pred cCCCCCCceEEEEec--cchhhhhhcCcccccchhc---CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHH
Confidence 8753 689999999 8999999999998888764 68999999999999999999999999999999999999999
Q ss_pred HHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCC--HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCccc
Q 004034 665 SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS--EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742 (778)
Q Consensus 665 ~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~--~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~ 742 (778)
.+|.+||.|.+++|++.+++..++.++++|++..+...+ ....++|+++++++||+|++|+.+++ ++||+|++||++
T Consensus 470 ~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gKv~ 548 (567)
T PLN02479 470 NVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSVVF-GPLPKTATGKIQ 548 (567)
T ss_pred HHHHhCcccceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCceEEe-ccCCCCCccCee
Confidence 999999999999999998877788999999987654221 23467899999999999999998877 679999999999
Q ss_pred HHHHHHHHhc
Q 004034 743 RRILRKIASR 752 (778)
Q Consensus 743 R~~L~~~~~~ 752 (778)
|+.|++.+..
T Consensus 549 r~~L~~~~~~ 558 (567)
T PLN02479 549 KHVLRAKAKE 558 (567)
T ss_pred HHHHHHHHHh
Confidence 9999988664
|
|
| >PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=563.87 Aligned_cols=430 Identities=19% Similarity=0.212 Sum_probs=355.7
Q ss_pred eecHHHHHHHHHHHHHHHHHcCC-CCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEE
Q 004034 232 TLTYSQLLQQVCQLANYLKDIGV-KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVIT 310 (778)
Q Consensus 232 ~lTY~eL~~~v~~lA~~L~~~Gv-~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit 310 (778)
-+.|+||.++++++|+.|++.|+ ++|++|+++++|++++++++|||+++|++++|++|.++.+++.+++++++++++++
T Consensus 19 ~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~i~ 98 (452)
T PRK07445 19 GYNSQRFYQLAQQLYLQLQQLATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQIWG 98 (452)
T ss_pred ecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEEEe
Confidence 47899999999999999999998 57999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcE
Q 004034 311 SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPL 390 (778)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a 390 (778)
++..... . ... .. . ......+++++
T Consensus 99 ~~~~~~~-----------------------~-----~~~----------------------~~--~---~~~~~~~~~~~ 123 (452)
T PRK07445 99 LDQLKLS-----------------------H-----PPP----------------------LP--S---QGILPNLETGW 123 (452)
T ss_pred cCccccc-----------------------c-----CCC----------------------CC--c---cccCCCCCCcE
Confidence 6542100 0 000 00 0 00113568999
Q ss_pred EEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCCh
Q 004034 391 FLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDS 470 (778)
Q Consensus 391 ~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~ 470 (778)
+++|||||||.||||+++|++++.. .......+++.+ ++.++.+|++|.+|+ ..++.+|+.|+++++.+.. ..
T Consensus 124 ~i~~TSGTTG~PKgV~~t~~~l~~~-~~~~~~~~~~~~-~~~~~~~Pl~h~~g~-~~~~~~l~~G~t~v~~~~~----~~ 196 (452)
T PRK07445 124 IMIPTGGSSGQIRFAIHTWETLTAS-VQGFQRYFQLQQ-VNSFCVLPLYHVSGL-MQFMRSFLTGGKLVILPYK----RL 196 (452)
T ss_pred EEEeCCCCCCCCcEEEechHHHHHH-HHHHHHHhcCCC-CceEeccCchhhhhH-HHHHHHHHcCCeEEEcChH----hc
Confidence 9999999999999999999995443 333444556654 467889999999885 5678899999999997531 11
Q ss_pred hHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccccccccc
Q 004034 471 GRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550 (778)
Q Consensus 471 ~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g 550 (778)
........++++|++.++|++++.|++.. ...+++||.+++||+++++++.+.+.+ ++ +++++.||+||++
T Consensus 197 ~~~~~~~~~~~~t~~~~vP~~l~~l~~~~-----~~~l~~l~~i~~gG~~l~~~~~~~~~~-~~---~~l~~~YG~TE~~ 267 (452)
T PRK07445 197 KSGQELPPNPSDFFLSLVPTQLQRLLQLR-----PQWLAQFRTILLGGAPAWPSLLEQARQ-LQ---LRLAPTYGMTETA 267 (452)
T ss_pred cchhhhhhhcCceEEEehHHHHHHHHhhC-----hhhhhcceEEEECCccCCHHHHHHHHh-cC---CeEecCcchhhhc
Confidence 22233445789999999999999998732 124789999999999999999988765 34 7899999999998
Q ss_pred ceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcC
Q 004034 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTG 630 (778)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTG 630 (778)
..++...+......++++|+|+++++++|+ .|+.|||+|+| |.+++||++++. ..+|||+||
T Consensus 268 ~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~--------~g~~Gel~v~g--~~~~~gY~~~~~--------~~~g~~~TG 329 (452)
T PRK07445 268 SQIATLKPDDFLAGNNSSGQVLPHAQITIP--------ANQTGNITIQA--QSLALGYYPQIL--------DSQGIFETD 329 (452)
T ss_pred ccccccCchhhccCCCcCCccCCCCeEEEc--------CCCcceEEEeC--CccchhhcCCcc--------CCCCEEECC
Confidence 654433222212345789999999999997 35689999999 899999998642 136899999
Q ss_pred cEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHH
Q 004034 631 DGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL 710 (778)
Q Consensus 631 Dl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l 710 (778)
|++++|+||+++|.||.||+||++|++|+|.|||++|.+||+|.+|+|++++++..|+.++|+|+.+++. .+ .++|
T Consensus 330 Dl~~~d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~-~~---~~~l 405 (452)
T PRK07445 330 DLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPS-IS---LEEL 405 (452)
T ss_pred CEEEEcCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCC-CC---HHHH
Confidence 9999999999999999999999999999999999999999999999999999988889999999987653 22 5789
Q ss_pred HHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 711 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 711 ~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
+++++++|+.|++|+.++++++||+|++||++|++|++++.+++
T Consensus 406 ~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 449 (452)
T PRK07445 406 KTAIKDQLSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRL 449 (452)
T ss_pred HHHHHHhCCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999987654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=621.59 Aligned_cols=499 Identities=20% Similarity=0.237 Sum_probs=395.9
Q ss_pred HHHHHHHhhhccCC-CeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 202 CYNCLDRNIEAGLG-DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 202 ~~~~l~~~~~~~~p-d~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+.+.|+++++ ++| +++|+.+.+ ++++||+||+++++++|+.|++ |+++||+|+++++|++++++++|||+++
T Consensus 633 ~~~~l~~~~~-~~~~~~~ai~~~~-----~~~~Ty~el~~~~~~lA~~L~~-g~~~gd~V~i~~~n~~~~~~~~la~~~~ 705 (1140)
T PRK06814 633 LFEALIEAAK-IHGFKKLAVEDPV-----NGPLTYRKLLTGAFVLGRKLKK-NTPPGENVGVMLPNANGAAVTFFALQSA 705 (1140)
T ss_pred HHHHHHHHHH-HcCCCCeEeECCC-----CCccCHHHHHHHHHHHHHHHHh-cCCCCCeEEEEcCCchHHHHHHHHHHHC
Confidence 5667777777 565 667776421 5789999999999999999975 9999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+||.++.+++.+++++++++++|+++......+ ..+..+.+ .....++.+++... ...
T Consensus 706 G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~-------~~~~~~~~----~~~~~~i~~~~~~~----~~~- 769 (1140)
T PRK06814 706 GRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKAR-------LGPLIEAL----EFGIRIIYLEDVRA----QIG- 769 (1140)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhc-------chhHHHHh----ccCceEEEehHhhc----cCC-
Confidence 999999999999999999999999999999865421100 01111111 11223444433210 000
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
....+.+......+..+.....++|+++|+|||||||.||||+++|++++ .........+++.++|++++.+|++|
T Consensus 770 ---~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~-~~~~~~~~~~~~~~~d~~l~~~pl~h 845 (1140)
T PRK06814 770 ---LADKIKGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLL-ANRAQVAARIDFSPEDKVFNALPVFH 845 (1140)
T ss_pred ---hHHHHHHHhhccCCccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHH-HHHHHHHHhhCCCCcCEEEEecchHH
Confidence 00001111111111111113578999999999999999999999999954 44445556788999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..++...++.++..|+++++.+.. .+...+.+.++++++|++..+|++++.+.+.. ...+++++|.+++|||+
T Consensus 846 ~~g~~~~~~~~l~~G~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~----~~~~~~~lr~v~~gg~~ 918 (1140)
T PRK06814 846 SFGLTGGLVLPLLSGVKVFLYPSP---LHYRIIPELIYDTNATILFGTDTFLNGYARYA----HPYDFRSLRYVFAGAEK 918 (1140)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCc---ccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc----ccccccceeEEEEcCCc
Confidence 998778888999999999998642 35677889999999999999999999987753 23467899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+++.+.++ +++++.||+||++.......+. ..+++++|+|++++++++.+..+ .|+.|||+++|
T Consensus 919 l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~g~~~~~~~~~~----~~~~Gel~v~g- 988 (1140)
T PRK06814 919 VKEETRQTWMEKFG---IRILEGYGVTETAPVIALNTPM--HNKAGTVGRLLPGIEYRLEPVPG----IDEGGRLFVRG- 988 (1140)
T ss_pred CCHHHHHHHHHHhC---CcEEeccccccccceEEecCCC--CCCCCcCCccCCCCeEEEeecCC----CCCceEEEEeC-
Confidence 99999999999886 6899999999998765543321 23567899999999999987543 35789999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|++++||+++++.... ....+|||+|||++++|+||+++++||.||+||++|+||+|.|||++|.+||.|.|++|++
T Consensus 989 -~~~~~gY~~~~~~~~~--~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~ 1065 (1140)
T PRK06814 989 -PNVMLGYLRAENPGVL--EPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVS 1065 (1140)
T ss_pred -CCcchhhcCCCCCCcc--ccCCCCeEecCCEEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEE
Confidence 8999999997643221 1124789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
++++..++.+++++... +.+ .+++++++++. +++|++|..|+++++||+|++||+||++|+++..+.
T Consensus 1066 ~~~~~~g~~~~~~~~~~---~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 1133 (1140)
T PRK06814 1066 IPDARKGERIILLTTAS---DAT---RAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEA 1133 (1140)
T ss_pred cccCCCCceEEEEEcCC---CcC---HHHHHHHHHHcCCCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHh
Confidence 99988888888776421 222 46788888864 999999999999999999999999999999988754
|
|
| >PRK08974 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-62 Score=567.70 Aligned_cols=514 Identities=21% Similarity=0.298 Sum_probs=406.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
.+.++|+++++ ++|+++|++.. ++++||.||.++++++|.+|+ ++|+++||+|+|+++|++++++++|||++
T Consensus 24 ~l~~~l~~~a~-~~p~~~a~~~~------~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~ 96 (560)
T PRK08974 24 SLVDMFEQAVA-RYADQPAFINM------GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR 96 (560)
T ss_pred cHHHHHHHHHH-hCCCCceEEEC------CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 47789999998 89999999875 579999999999999999998 48999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc--
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN-- 357 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-- 357 (778)
+|++++|++|.++.+++.+++++++++++++.+... ..+.+.... .....++............
T Consensus 97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 162 (560)
T PRK08974 97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFA---------HTLEKVVFK-----TPVKHVILTRMGDQLSTAKGT 162 (560)
T ss_pred cCcEEeccCccCCHHHHHHHHHhcCceEEEEecccc---------HHHHHHhhh-----cCcceEEEecccccccccccc
Confidence 999999999999999999999999999999976532 112221111 1122222111000000000
Q ss_pred -------------ccCCCCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh
Q 004034 358 -------------TKWQDGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA 423 (778)
Q Consensus 358 -------------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~ 423 (778)
..........+.+...... .........++++++|+|||||||.||||+++|++++.+........
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~ 242 (560)
T PRK08974 163 LVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAY 242 (560)
T ss_pred cccchhhhcccccccccCCCcccHHHHhhccCCCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhh
Confidence 0000000001111111110 01111234678999999999999999999999999654433222211
Q ss_pred h--CCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 424 F--DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 424 ~--~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
. ....+++++..+|+.|.++.....+.++..|+++++.... .++..+++.++++++|++..+|++++.|+....
T Consensus 243 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~- 318 (560)
T PRK08974 243 GPLLHPGKELVVTALPLYHIFALTVNCLLFIELGGQNLLITNP---RDIPGFVKELKKYPFTAITGVNTLFNALLNNEE- 318 (560)
T ss_pred ccccCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCeEEEecCc---cCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcC-
Confidence 1 1234567888899999888666667788899998876432 378889999999999999999999999987643
Q ss_pred ccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC
Q 004034 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD 581 (778)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd 581 (778)
....+++++|.+++||+++++.++++|.+.+| +++++.||+||++.+.+...... ...++++|.|+++++++|+|
T Consensus 319 -~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g---~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~ 393 (560)
T PRK08974 319 -FQELDFSSLKLSVGGGMAVQQAVAERWVKLTG---QYLLEGYGLTECSPLVSVNPYDL-DYYSGSIGLPVPSTEIKLVD 393 (560)
T ss_pred -cccCCccceeEEEecCccCCHHHHHHHHHHhC---CcEEeeecccccCceeeccCCCC-cccCCccccCcCCCEEEEEC
Confidence 23346789999999999999999999998876 78999999999987655433221 23467899999999999999
Q ss_pred CCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHH
Q 004034 582 EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTA 661 (778)
Q Consensus 582 ~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~ 661 (778)
+++++++.|+.|||+|+| +.+++||+++++.+...+ . +|||+|||+++++++|+++++||.||+|+++|++|+|.
T Consensus 394 ~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~-~--~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~ 468 (560)
T PRK08974 394 DDGNEVPPGEPGELWVKG--PQVMLGYWQRPEATDEVI-K--DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPN 468 (560)
T ss_pred CCCCCCCCCCceEEEEec--CCcchhhcCChhhhhhhh-h--cCCcccCCEEEEcCCceEEEEecccceEEeCCEEECHH
Confidence 999999999999999999 899999999998777655 3 68999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcc
Q 004034 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKI 741 (778)
Q Consensus 662 eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi 741 (778)
+||++|.+||+|.+++|++.+++..++.++++|+..+.. .+ .++++++++++|+.|++|..++++++||+|++||+
T Consensus 469 ~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~---~~~l~~~l~~~l~~~~~P~~~~~~~~lP~t~~GK~ 544 (560)
T PRK08974 469 EIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPS-LT---EEELITHCRRHLTGYKVPKLVEFRDELPKSNVGKI 544 (560)
T ss_pred HHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCC-CC---HHHHHHHHHhhcccccCCcEEEEhhhCCCCCCCcE
Confidence 999999999999999999999988888888888765432 22 46789999999999999999999999999999999
Q ss_pred cHHHHHHHHhcc
Q 004034 742 MRRILRKIASRQ 753 (778)
Q Consensus 742 ~R~~L~~~~~~~ 753 (778)
+|+.|++....+
T Consensus 545 ~r~~l~~~~~~~ 556 (560)
T PRK08974 545 LRRELRDEARAK 556 (560)
T ss_pred eHHHHHHHHHhh
Confidence 999999987654
|
|
| >PRK12582 acyl-CoA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-63 Score=586.58 Aligned_cols=524 Identities=19% Similarity=0.201 Sum_probs=390.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+...+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 50 ~l~~~l~~~a~-~~pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 128 (624)
T PRK12582 50 SIPHLLAKWAA-EAPDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQA 128 (624)
T ss_pred CHHHHHHHHHH-HCCCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHc
Confidence 57889999998 89999999875321233579999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCH-----HHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccc
Q 004034 281 GAVHSVVFAGFSS-----DSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (778)
Q Consensus 281 Gav~vpl~p~~~~-----~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (778)
|++++|++|.++. +++.+++++++++++|+++... ....+..+.. ..++ ++.++....
T Consensus 129 G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----------~~~~~~~~~~--~~~~-~i~~~~~~~--- 191 (624)
T PRK12582 129 GVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAP-----------FARALAALDL--LDVT-VVHVTGPGE--- 191 (624)
T ss_pred CCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHH-----------HHHHHHhhhh--cCce-EEEEcCCCc---
Confidence 9999999999885 8999999999999999876421 1111111110 1122 333322110
Q ss_pred ccccCCCCcccchhhccCCCCCC---CCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCC---C
Q 004034 356 ENTKWQDGRDIWWQDVVPKYPTK---CEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP---S 429 (778)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~---~ 429 (778)
......+.+........ .......++++++|+|||||||.||||+++|++++.+... ....+.... .
T Consensus 192 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~~~~~ 264 (624)
T PRK12582 192 ------GIASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAM-QEQLRPREPDPPP 264 (624)
T ss_pred ------ccccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHH-HHHhccccCCCCC
Confidence 00112233322211110 1112346789999999999999999999999996554333 333344443 5
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc--ccccCC
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTRYS 507 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~--~~~~~~ 507 (778)
++++.++|++|.+++...++.+|..|+++++.++.........+++.++++++|+++++|++++.|++.... .....+
T Consensus 265 ~~~l~~lPl~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~ 344 (624)
T PRK12582 265 PVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSF 344 (624)
T ss_pred ceEEEechHHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHH
Confidence 799999999999987777888999999999875421111224567778899999999999999988764221 112235
Q ss_pred CCceeEEEEecCCCCHHHHHHHHHHh----CCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCC
Q 004034 508 RKSLRVLGSVGEPINPSAWRWFFNVV----GDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK 583 (778)
Q Consensus 508 l~sLr~v~~gGe~l~~~~~~~~~~~~----g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~ 583 (778)
+++||.+++||+++++++.+++.+.+ |. ++++++.||+||++.++...... ..+++++|+|++|++++|+
T Consensus 345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~pg~~v~i~--- 418 (624)
T PRK12582 345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGH-RIPFYTGYGATETAPTTTGTHWD--TERVGLIGLPLPGVELKLA--- 418 (624)
T ss_pred hhheeEEEecCCCCCHHHHHHHHHHHHhhcCC-CceEEeccccccccceeecccCC--CCCCCCCCcCCCCcEEEEc---
Confidence 68999999999999999999998863 32 36799999999998765422211 2457899999999999985
Q ss_pred CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEE-e---cCCeEEEEeecCCEEEeC-ceee
Q 004034 584 GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR-D---KDGYHWLTGRVDDVINVS-GHRI 658 (778)
Q Consensus 584 g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~-~---~dG~l~~~GR~dd~Iki~-G~rI 658 (778)
+.|+.|||+|+| |+++.|||++++.+.+.|.. +|||+|||+|++ | +||+|+|+||+||+||++ |++|
T Consensus 419 ----~~G~~GEl~vrg--~~v~~GY~~~p~~t~~~f~~--dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i 490 (624)
T PRK12582 419 ----PVGDKYEVRVKG--PNVTPGYHKDPELTAAAFDE--EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWV 490 (624)
T ss_pred ----cCCCceEEEEEC--CcccccccCCccchhhhcCc--cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEe
Confidence 456789999999 89999999999988776643 789999999998 4 569999999999999975 9999
Q ss_pred CHHHHH--HHHhcCCccceEEEEEEecCCCCeEEEEEEEEcC----------CCC-----CCHHHHHHHHHHH---Hhhc
Q 004034 659 GTAEVE--SALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE----------GVP-----YSEELRKSLVLAV---RKQI 718 (778)
Q Consensus 659 ~~~eIE--~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~----------~~~-----~~~~l~~~l~~~l---~~~L 718 (778)
+|.+|| .++.+||.|.||+|++++++. +.+.|++.. +.. ..+++.+.++..| ++.+
T Consensus 491 ~p~~iE~e~~l~~~p~V~~a~VvG~~~~~----~g~lv~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 566 (624)
T PRK12582 491 SVGTLRPDAVAACSPVIHDAVVAGQDRAF----IGLLAWPNPAACRQLAGDPDAAPEDVVKHPAVLAILREGLSAHNAEA 566 (624)
T ss_pred chHHHHHHHHHhcCcchheEEEEcCCCCc----EEEEEecCHHHHHHHHhcCCCCHHHHhcCHHHHHHHHHHHHHHHhhc
Confidence 998885 688999999999999987664 344444321 110 1123333333332 3346
Q ss_pred CCCc-cccEEEECCCCCC------CCCCcccHHHHHHHHhcccCcCCCCCCCCChhhH
Q 004034 719 GAFA-APDKIHWAPGLPK------TRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 769 (778)
Q Consensus 719 p~~~-~P~~i~~v~~lP~------T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (778)
+.+. .|+++++++++|+ |++||+.|+++.+.+..+++++++. ...|+++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~~ly~~--~~~~~~~ 622 (624)
T PRK12582 567 GGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVERLYAE--PPGPDVI 622 (624)
T ss_pred CCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHHHHhcC--CCCCCcc
Confidence 6666 9999999998875 5677889999999999999998854 4666664
|
|
| >PRK09192 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-62 Score=573.81 Aligned_cols=504 Identities=20% Similarity=0.224 Sum_probs=389.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.++|+..++ .+|+.+++ .. +.+..+.+||.||+++++++|.+|+++|+++||+|+|+++|++++++++|||+++
T Consensus 22 ~~~~~~~~~~~-~~~~~~~~-~~--~~~~~~~~Ty~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~~~~~~lA~~~~ 97 (579)
T PRK09192 22 TLVEALDYAAL-GEAGMNFY-DR--RGQLEEALPYQTLRARAEAGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYA 97 (579)
T ss_pred hHHHHHHHhhc-cCCceEEE-ec--CCCEEEEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchhHHHHHHHHHHc
Confidence 68899998887 67755543 22 1122478999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCC-------HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcc
Q 004034 281 GAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353 (778)
Q Consensus 281 Gav~vpl~p~~~-------~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 353 (778)
|++++|+++.++ .+++.++++.+++++||+++... ..+.+.... .....+..
T Consensus 98 G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~---------~~~~~~~~~-----~~~~~~~~------- 156 (579)
T PRK09192 98 GLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELL---------PWVNEATHG-----NPLLHVLS------- 156 (579)
T ss_pred CCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHH---------HHHHHhhcc-----ccccceee-------
Confidence 999999987543 68999999999999999976531 122221111 00111110
Q ss_pred ccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEE
Q 004034 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYW 433 (778)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l 433 (778)
|.++........+.....+++++||+|||||||.||||+++|++++.+........+++.++|+++
T Consensus 157 --------------~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~d~~l 222 (579)
T PRK09192 157 --------------HAWFKALPEADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGLKVRPGDRCV 222 (579)
T ss_pred --------------hhhhcccCCCccccCCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcccCCCCCeEE
Confidence 111111111111122346789999999999999999999999996655443333378899999999
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc-ccccCCCCcee
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLR 512 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~-~~~~~~l~sLr 512 (778)
+.+|++|..+++..++.++..|+++++........++..+++++.++++|+++..|.++..+...... .....+++++|
T Consensus 223 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr 302 (579)
T PRK09192 223 SWLPFYHDMGLVGFLLTPVATQLSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWR 302 (579)
T ss_pred EeCCCCCcchhHHHHHHHHHhCCeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhh
Confidence 99999999997777888899999998765322223678899999999999887766656555433211 12235788999
Q ss_pred EEEEecCCCCHHHHHHHHHHhCCCC---cceecccccccccceecccCCCCC--------------------------CC
Q 004034 513 VLGSVGEPINPSAWRWFFNVVGDSR---CPISDTWWQTETGGFMITPLPGAW--------------------------PQ 563 (778)
Q Consensus 513 ~v~~gGe~l~~~~~~~~~~~~g~~~---~~i~~~YG~TE~g~~~~~~~~~~~--------------------------~~ 563 (778)
.+++||+++++++++.+.+.++..+ ..+++.||+||++...+....... ..
T Consensus 303 ~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (579)
T PRK09192 303 VAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVR 382 (579)
T ss_pred eeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccce
Confidence 9999999999999999988774221 358999999999865443211100 01
Q ss_pred CCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEE
Q 004034 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWL 643 (778)
Q Consensus 564 ~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~ 643 (778)
...++|+|+++++++|+|+++++++.|+.|||+|+| +++++|||++ +.+...+. .+|||+|||+|++ +||+++|
T Consensus 383 ~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g--~~~~~gY~~~-~~~~~~~~--~dgw~~TGDlg~~-~~G~l~~ 456 (579)
T PRK09192 383 TFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRG--PSLMSGYFRD-EESQDVLA--ADGWLDTGDLGYL-LDGYLYI 456 (579)
T ss_pred eEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecC--CchhhhhcCC-cccccccc--CCceeeccceeeE-ECCEEEE
Confidence 125789999999999999999999999999999999 8999999999 54544443 3789999999999 9999999
Q ss_pred EeecCCEEEeCceeeCHHHHHHHHhcCCccc--eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcC-C
Q 004034 644 TGRVDDVINVSGHRIGTAEVESALVSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIG-A 720 (778)
Q Consensus 644 ~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp-~ 720 (778)
+||+||+||++|++|+|.|||++|.+||+|. +|+|++++++. ++.++++|+..++.. ...++|++++++.+. .
T Consensus 457 ~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~---~~~~~l~~~~~~~l~~~ 532 (579)
T PRK09192 457 TGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQCRISDE---ERRGQLIHALAALVRSE 532 (579)
T ss_pred EeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEEeccCC-CeeEEEEEEecCCCh---HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 89999998874 558888888765432 224677777777764 5
Q ss_pred CccccEEEECC--CCCCCCCCcccHHHHHHHHhcc
Q 004034 721 FAAPDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 721 ~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+++|..+++++ +||+|++||++|++|++++..-
T Consensus 533 ~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~~ 567 (579)
T PRK09192 533 FGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLSG 567 (579)
T ss_pred hCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHcC
Confidence 78888888885 8999999999999999998653
|
|
| >PRK12406 long-chain-fatty-acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=556.93 Aligned_cols=487 Identities=22% Similarity=0.278 Sum_probs=390.6
Q ss_pred ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEE
Q 004034 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (778)
Q Consensus 230 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~ii 309 (778)
.+.+||.||.++++++|++|.++|+++||+|+++++|++++++++|||+++|++++|++|.++.+++.++++++++++++
T Consensus 9 ~~~~Ty~el~~~~~~la~~l~~~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l~~~~~~~i~ 88 (509)
T PRK12406 9 DRRRSFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYILEDSGARVLI 88 (509)
T ss_pred CeeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHHhccCCcEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcc----ccc-cccCCCCcccchhhccCCCCCCCCcccc
Q 004034 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM----TRE-NTKWQDGRDIWWQDVVPKYPTKCEVEWV 384 (778)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 384 (778)
++..... .+.+... ..+. ++........ ... ...........|.+...... +....
T Consensus 89 ~~~~~~~---------~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 149 (509)
T PRK12406 89 AHADLLH---------GLASALP------AGVT-VLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQQE---PYDGP 149 (509)
T ss_pred Eccchhh---------hhhhhhh------cccc-eeecccccccccccccccccccCCCCccCHHHHhcccC---ccCCC
Confidence 8765321 1111110 0111 1111110000 000 00000111223333322211 12234
Q ss_pred CCCCcEEEEeCCCCCCCCceEEEccchHHHH--HHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEc
Q 004034 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH--TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (778)
Q Consensus 385 ~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~ 462 (778)
.++++++|+|||||||.||+|+++|...... ........+++.++++++...|+.|..++.+. +.++..|+++++.+
T Consensus 150 ~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~g~~~~~~~ 228 (509)
T PRK12406 150 PVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQP 228 (509)
T ss_pred CCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhcCCCCCceEEEEeCCcccchHHHH-HHHHhhheEEEEcc
Confidence 5789999999999999999999987753222 12233456788999999999999998875544 45688999998875
Q ss_pred CCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceec
Q 004034 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542 (778)
Q Consensus 463 ~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 542 (778)
. .+++.+++.++++++|.+.++|++++.|++.........+++++|.+++||+++++++++++.+.++ +.+++
T Consensus 229 ~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~---~~~~~ 301 (509)
T PRK12406 229 R----FDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWG---PVIYE 301 (509)
T ss_pred C----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcC---CcEEe
Confidence 3 4889999999999999999999999999876543334557889999999999999999999999886 67999
Q ss_pred ccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccc-cccCChhhhhhhccC
Q 004034 543 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFR-TLYGDHERYETTYFK 621 (778)
Q Consensus 543 ~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~-gY~~~~~~~~~~~~~ 621 (778)
.||+||++.+++.... .....++++|+|+++++++|+|+++++++.|+.|||++++ ++++. +|+++++.+....
T Consensus 302 ~YG~tE~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~--~~~~~~~y~~~~~~~~~~~-- 376 (509)
T PRK12406 302 YYGSTESGAVTFATSE-DALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRI--AGNPDFTYHNKPEKRAEID-- 376 (509)
T ss_pred eccccccCceEecCcc-cccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEEC--CccccccccCCchhccccc--
Confidence 9999999976553322 1234567899999999999999999999999999999999 77764 8999887665432
Q ss_pred CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCC
Q 004034 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP 701 (778)
Q Consensus 622 ~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~ 701 (778)
.+|||+|||++++++||++++.||.||+||++|++|+|.|||++|.+||+|.+++|++.++...++.++++|++.++..
T Consensus 377 -~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~ 455 (509)
T PRK12406 377 -RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGAT 455 (509)
T ss_pred -CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCC
Confidence 3789999999999999999999999999999999999999999999999999999999998877888999999876543
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 702 ~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.+ .++|++++++.|++|++|..++++++||+|++||++|+.|++.+..
T Consensus 456 ~~---~~~l~~~l~~~l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~ 503 (509)
T PRK12406 456 LD---EADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWA 503 (509)
T ss_pred CC---HHHHHHHHHHhcccCCCCcEEEEeccCCCCCccchhHHHHHHHHHh
Confidence 33 5789999999999999999999999999999999999999988764
|
|
| >PRK05850 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-62 Score=569.64 Aligned_cols=511 Identities=20% Similarity=0.240 Sum_probs=380.2
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCC---CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
+.++|++++. .+|+++|+++.+.. .+..+++||+||.++++++|++|+++| ++||+|+|+++|++++++++|||+
T Consensus 3 ~~~~l~~~a~-~~p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~~g-~~gd~V~l~~~n~~~~~~~~lA~~ 80 (578)
T PRK05850 3 VPSLLRERAS-LQPDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRRHG-STGDRAVILAPQGLEYIVAFLGAL 80 (578)
T ss_pred HHHHHHHHHh-cCCCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHHhC-CCCCEEEEEcCCcccHHHHHHHHH
Confidence 5577889888 89999999975321 122478999999999999999999999 689999999999999999999999
Q ss_pred HhCCEEEeCCC---CCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccc
Q 004034 279 RIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTR 355 (778)
Q Consensus 279 ~~Gav~vpl~p---~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~ 355 (778)
++|++++|+++ .++.+++.++|+++++++|++++... ..+.+...... ......++.++...
T Consensus 81 ~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~---- 145 (578)
T PRK05850 81 QAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVV---------DDVTEYVAPQP--GQSAPPVIEVDLLD---- 145 (578)
T ss_pred HcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHH---------HHHHHHHhhcc--cccccceEeecccc----
Confidence 99999999997 55789999999999999999986532 11211111100 00111122111100
Q ss_pred ccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC-----CCCCc
Q 004034 356 ENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD-----YKPSD 430 (778)
Q Consensus 356 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~-----~~~~d 430 (778)
+ .. ..........++++++|+|||||||.||||+++|++++.+........+. ...++
T Consensus 146 ------------~----~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 208 (578)
T PRK05850 146 ------------L----DS-PRGSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDT 208 (578)
T ss_pred ------------c----cc-CCccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcc
Confidence 0 00 00001123457899999999999999999999999966554433333333 34578
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHH-HHHHhcCC-cccccCCC
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLV-RSLMRDGN-EYVTRYSR 508 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l-~~L~~~~~-~~~~~~~l 508 (778)
++++..|++|+.|++..++.+++.|+++++.++.....++..+++++++++++++ .+|+++ ..+..... ......++
T Consensus 209 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~ 287 (578)
T PRK05850 209 TVVSWLPFYHDMGLVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDL 287 (578)
T ss_pred eEEEECCCCCCchhHHHHHHHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcch
Confidence 9999999999999888899999999999998643222378999999999999865 555554 33333211 11223467
Q ss_pred CceeEEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCCC-----------------------
Q 004034 509 KSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAWP----------------------- 562 (778)
Q Consensus 509 ~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~~----------------------- 562 (778)
+++|.+++||++++++++++|.+.++. .+..+++.||+||++..+........+
T Consensus 288 ~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 367 (578)
T PRK05850 288 GGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGG 367 (578)
T ss_pred hhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCC
Confidence 899999999999999999999887742 234689999999987544322111000
Q ss_pred CCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC---------CCCCeEEcCcE
Q 004034 563 QKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTGDG 632 (778)
Q Consensus 563 ~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~---------~~~G~yrTGDl 632 (778)
....+.|.|. +.+++|+|+ ++++++.|+.|||+|+| |++++|||++++.+.+.|.. ..+|||+|||+
T Consensus 368 ~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g--~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl 444 (578)
T PRK05850 368 TPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHG--DNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDL 444 (578)
T ss_pred ceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEec--CcccccccCChhhhHHHhhcccccccccCCCCCeeeccce
Confidence 0112345554 578999995 57899999999999999 89999999999988887742 12469999999
Q ss_pred EEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHH---HHHH
Q 004034 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEE---LRKS 709 (778)
Q Consensus 633 ~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~---l~~~ 709 (778)
|+++ ||+++|+||+||+||++|++|+|.|||++|.+||.+ +++|++++++ .++.++|+|+++++...+++ ..++
T Consensus 445 ~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~-~~~v~~v~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~~ 521 (578)
T PRK05850 445 GFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG-RVAAISVPDD-GTEKLVAIIELKKRGDSDEEAMDRLRT 521 (578)
T ss_pred eeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC-cEEEEEecCC-CceEEEEEEEeccccCcchhhhhhHHH
Confidence 9998 999999999999999999999999999999999995 5888888886 67889999998765432211 2345
Q ss_pred HHHHHHhhcCC--CccccEEEECC--CCCCCCCCcccHHHHHHHHhcc
Q 004034 710 LVLAVRKQIGA--FAAPDKIHWAP--GLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 710 l~~~l~~~Lp~--~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+++.+...++. ...|..+++++ .||+|++|||+|++|++.+.+.
T Consensus 522 l~~~v~~~l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~~ 569 (578)
T PRK05850 522 VKREVTSAISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQD 569 (578)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHcC
Confidence 55555544432 23566666664 8999999999999999998653
|
|
| >PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=551.94 Aligned_cols=446 Identities=19% Similarity=0.165 Sum_probs=374.2
Q ss_pred HHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEE
Q 004034 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (778)
Q Consensus 206 l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~v 285 (778)
...+++ ++|+++|++.. ++.+||+||.++++++|..|++.|+++||+|+++++|++++++++|||+++|++++
T Consensus 9 ~~~~a~-~~~~~~a~~~~------~~~~ty~el~~~~~~~a~~L~~~g~~~~~~v~l~~~~~~~~~~~~la~~~~G~~~v 81 (458)
T PRK09029 9 WRHWAQ-VRPQAIALRLN------DEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVL 81 (458)
T ss_pred HHHHHH-hCCCceeeecC------CcceeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEe
Confidence 345566 89999999865 67899999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcc
Q 004034 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (778)
Q Consensus 286 pl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (778)
|+++.++.+++..++++++++++++.++... + .. +.... ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~----~~-------~~~~~-~~----------------- 122 (458)
T PRK09029 82 PLNPQLPQPLLEELLPSLTLDFALVLEGENT----------F----SA-------LTSLH-LQ----------------- 122 (458)
T ss_pred ecCCCCCHHHHHHHHHhcCCCEEEEcCcccc----------h----hh-------ccccc-cc-----------------
Confidence 9999999999999999999999998765321 0 00 00000 00
Q ss_pred cchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhh
Q 004034 366 IWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (778)
Q Consensus 366 ~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~ 445 (778)
. ....+.....++++++++|||||||.||||+++|++++.. .......+++.++|+++...|++|.+++
T Consensus 123 --------~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~-~~~~~~~~~~~~~~~~l~~~p~~h~~g~- 191 (458)
T PRK09029 123 --------L-VEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQAHLAS-AEGVLSLMPFTAQDSWLLSLPLFHVSGQ- 191 (458)
T ss_pred --------c-ccccCcccCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHH-HHHHhhcCCCCccceEEEecCcHhhhhh-
Confidence 0 0001112346789999999999999999999999996554 4444556788899999999999999885
Q ss_pred HHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHH
Q 004034 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (778)
Q Consensus 446 ~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 525 (778)
..++.+|..|+++++.+. ..+++.+ .++|.+..+|+++..|+..... ..++|.+++||+++++.+
T Consensus 192 ~~~~~~l~~G~~v~~~~~-------~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~------~~~l~~i~~gG~~~~~~~ 256 (458)
T PRK09029 192 GIVWRWLYAGATLVVRDK-------QPLEQAL--AGCTHASLVPTQLWRLLDNRSE------PLSLKAVLLGGAAIPVEL 256 (458)
T ss_pred HHHHHHHhCCceEEeCCh-------HHHHHHH--hhceeeecChHHHHHHHhcccc------CCcceEEEECCCCCCHHH
Confidence 456778999999998642 4567777 4799999999999998876432 347999999999999999
Q ss_pred HHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCccc
Q 004034 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAF 605 (778)
Q Consensus 526 ~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~ 605 (778)
.+++.+. + +++++.||+||++...+.... ....++|+|+++++++|+| |||+|+| +.++
T Consensus 257 ~~~~~~~-g---~~~~~~YG~tE~~~~~~~~~~----~~~~~~G~~~~~~~~~i~~-----------gel~v~g--~~~~ 315 (458)
T PRK09029 257 TEQAEQQ-G---IRCWCGYGLTEMASTVCAKRA----DGLAGVGSPLPGREVKLVD-----------GEIWLRG--ASLA 315 (458)
T ss_pred HHHHHHc-C---CcEeccccccccCcceeccCC----CCCCCCCCCCCCCEEEEeC-----------CEEEEec--Ccee
Confidence 9988754 4 789999999999865443221 1235699999999999976 8999999 8999
Q ss_pred ccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCC
Q 004034 606 RTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEV 685 (778)
Q Consensus 606 ~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~ 685 (778)
.||+++++.+... ..+|||+|||+|++| ||+++|.||+||+||++|++|+|.|||++|.+||+|.||+|++++++.
T Consensus 316 ~gY~~~~~~~~~~---~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~ 391 (458)
T PRK09029 316 LGYWRQGQLVPLV---NDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAE 391 (458)
T ss_pred eeeecCccccccc---cCCCccCCCCcEEEe-CCEEEEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcc
Confidence 9999998765422 236899999999999 999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 686 KGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 686 ~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
.++.++++|+..... ..++|+++++++|++|++|..+++++++|+|.+||++|+.|++++.+.
T Consensus 392 ~~~~~~a~v~~~~~~-----~~~~l~~~~~~~l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~ 454 (458)
T PRK09029 392 FGQRPVAVVESDSEA-----AVVNLAEWLQDKLARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ 454 (458)
T ss_pred cCceEEEEEEcCccc-----CHHHHHHHHHhhchhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence 889999999876332 257899999999999999999999999999999999999999999854
|
|
| >PRK08162 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=555.51 Aligned_cols=506 Identities=21% Similarity=0.255 Sum_probs=392.1
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
..+.|++.++ .+|+++|+++. +..+||+||.++++++|.+|.+.|+++||+|+|+++|++++++++|||+++|
T Consensus 20 ~~~~~~~~~~-~~~~~~a~~~~------~~~~ty~~L~~~~~~~a~~L~~~g~~~g~~v~i~~~~~~~~~~~~lA~~~~G 92 (545)
T PRK08162 20 PLSFLERAAE-VYPDRPAVIHG------DRRRTWAETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAG 92 (545)
T ss_pred HHHHHHHHHH-HCCCCeEEEEC------CeEEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHhC
Confidence 5577888888 89999999886 5789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.+++++++++++++++... ..+.++...+ +.. ..+.++..... .....
T Consensus 93 ~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~-~~~~~~~~~~~---~~~~~ 155 (545)
T PRK08162 93 AVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFA---------EVAREALALL----PGP-KPLVIDVDDPE---YPGGR 155 (545)
T ss_pred cEEeccccccChHHHHHHHHhCCCeEEEEccchh---------hHHHHHHhhC----CCC-ceEEEecCccc---cccCC
Confidence 9999999999999999999999999999987642 2223322222 111 12222211100 00000
Q ss_pred CCcccchhhccCCCCCCCC-ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 362 DGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~-~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
......+.+.+........ ....+.+++++|+|||||||.||||+++|++++.+.... ...+++..++++++..|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~-~~~~~~~~~~~~l~~~pl~h 234 (545)
T PRK08162 156 FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSN-ILAWGMPKHPVYLWTLPMFH 234 (545)
T ss_pred CcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHH-HHhcCCCCCCeeEeccCcHh
Confidence 0011223333322211111 112244679999999999999999999999865544333 34567788899999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..+..+.++.++ .|++.++... +++..+++.|+++++|++.++|++++.|++.... ....+.+++.++++|++
T Consensus 235 ~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~~~~g~~ 307 (545)
T PRK08162 235 CNGWCFPWTVAA-RAGTNVCLRK----VDPKLIFDLIREHGVTHYCGAPIVLSALINAPAE--WRAGIDHPVHAMVAGAA 307 (545)
T ss_pred hhhHHHHHHHHH-HccEEEEeCC----CCHHHHHHHHHHcCCeEEEechHHHHHHHhCccc--cccCCccceEEEECCCC
Confidence 887655544444 4555555432 4899999999999999999999999999876542 12244567778899999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCC-C--------CCCCCCCcCcCcCC-ceEEEECC-CCceeCC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-A--------WPQKPGSATFPFFG-VQPVIVDE-KGVEIEG 589 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~-~--------~~~~~~~~G~p~~g-~~~~Ivd~-~g~~~~~ 589 (778)
+++++.+++.+. + +++++.||+||+++........ . ....+.+.|.+++. ..++|+|+ ++++++.
T Consensus 308 ~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~ 383 (545)
T PRK08162 308 PPAAVIAKMEEI-G---FDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPA 383 (545)
T ss_pred CCHHHHHHHHHh-C---CceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCC
Confidence 999999888764 4 7899999999986543322110 0 01123456766653 45788885 7888875
Q ss_pred -C-eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHH
Q 004034 590 -E-CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL 667 (778)
Q Consensus 590 -g-~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L 667 (778)
| +.|||+|+| +.++.||+++++.+...|. +|||+|||++++|+||+++|+||.||+||++|+||+|.|||++|
T Consensus 384 ~g~~~Gel~v~g--~~~~~gY~~~~~~~~~~~~---~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l 458 (545)
T PRK08162 384 DGETIGEIMFRG--NIVMKGYLKNPKATEEAFA---GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVL 458 (545)
T ss_pred CCCceeEEEEec--CcchhhhcCChhhhHHHhh---CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHH
Confidence 3 469999999 8899999999998877663 58999999999999999999999999999999999999999999
Q ss_pred hcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 668 VSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 668 ~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
.+||+|.+++|++.+++..++.++++|+++++...+ .++|++++++.|+.|++|..+++ ++||+|++||++|+.|+
T Consensus 459 ~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~~~l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~ 534 (545)
T PRK08162 459 YRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT---EEEIIAHCREHLAGFKVPKAVVF-GELPKTSTGKIQKFVLR 534 (545)
T ss_pred HhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC---HHHHHHHHHHhcccccCCcEEEe-cccCCCCCcCCcHHHHH
Confidence 999999999999999887788999999988765433 56899999999999999999875 68999999999999999
Q ss_pred HHHhc
Q 004034 748 KIASR 752 (778)
Q Consensus 748 ~~~~~ 752 (778)
+.+..
T Consensus 535 ~~~~~ 539 (545)
T PRK08162 535 EQAKS 539 (545)
T ss_pred HHHhh
Confidence 98764
|
|
| >COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-61 Score=540.03 Aligned_cols=518 Identities=22% Similarity=0.307 Sum_probs=387.4
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
.|..-...+.+..++.+++. .+|+.+|+.+.. .+.++.+||+|+.+++.++|++|+++|+.+||+|+|++.|++||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~--~~~~~~~ty~e~~~~v~~~a~gL~~lg~~~gdrvai~a~nr~eW~ 84 (613)
T COG1022 8 AWEDVAEIHTLPKRLAERVK-DRPDGVALMYKE--LGGWEAITYRELYERVRALASGLLSLGIPAGDRVAIFAANRPEWA 84 (613)
T ss_pred cchhhhhcccHHHHHHHHhh-cCCcceeEeeec--CCcceEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence 34433444467788888888 899988988765 366899999999999999999999999977999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE-E---E
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL-T---Y 347 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi-~---~ 347 (778)
++.+||+.+|++.||+++..+++.++++|+++++++||+.+... .+.+......+ +.+.... . +
T Consensus 85 i~d~a~~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~--------~~~~~~~~~~~----~~~~~~~~~~~~~ 152 (613)
T COG1022 85 IADLAILALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQEL--------LDLVLPVLEDC----PKVVDLIVIIDLV 152 (613)
T ss_pred HHHHHHHHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHH--------HHHHHhhhccc----cchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999987542 12222222211 0000000 0 0
Q ss_pred ccCCccccccccC-CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhC-
Q 004034 348 ENQSAMTRENTKW-QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFD- 425 (778)
Q Consensus 348 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~- 425 (778)
+............ .......+ ............+..+||+|.|+|||||||.||||+++|+|++.+ .......+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~-v~~~~~~~~~ 229 (613)
T COG1022 153 REAVEAKALVLEVFPDEGISLF--LIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQ-VAGIDEVLPP 229 (613)
T ss_pred hhccchhhccccccccccchhh--hhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHH-HHHHHhhCCC
Confidence 0000000000000 00011111 111111222225678999999999999999999999999996555 445556675
Q ss_pred CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC-----
Q 004034 426 YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN----- 500 (778)
Q Consensus 426 ~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~----- 500 (778)
+.++|++++++|+.|++...+.....+..|+++... .++..+++.++++++|.+..+|.+++.+.+.-.
T Consensus 230 ~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g~~~~~~------~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~ 303 (613)
T COG1022 230 IGPGDRVLSFLPLAHIFERAFEGGLALYGGVTVLFK------EDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAK 303 (613)
T ss_pred CCCCcEEEEeCcHHHHHHHHHHHHHHhhcceEEEec------CCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHh
Confidence 889999999999999998765544444444444433 388999999999999999999999988743210
Q ss_pred cc------------------------------------------cccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCc
Q 004034 501 EY------------------------------------------VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (778)
Q Consensus 501 ~~------------------------------------------~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (778)
.. ..... .++|.+++||.+|++++..+++.. | +
T Consensus 304 ~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~~~~sGGa~l~~~~~~f~~~l-G---i 378 (613)
T COG1022 304 APAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIRYALSGGAPLSPELLHFFRSL-G---I 378 (613)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHHhC-CcEEEEEecCCcCCHHHHHHHHHc-C---C
Confidence 00 00111 489999999999999999888775 3 8
Q ss_pred ceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 539 ~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
++..+||+|||++..+.+.+.. ..++++|.|+|+++++|.| .|||+|+| |.+|+|||++|+.|.+.
T Consensus 379 ~i~eGYGlTEts~~~~v~~~~~--~~~gtvG~p~p~~evKI~d----------~GEilVRG--~~Vm~GYyk~pe~Taea 444 (613)
T COG1022 379 PILEGYGLTETSAVVSVNPPDR--FVLGTVGKPLPGIEVKIAD----------DGEILVRG--PNVMKGYYKNPEATAEA 444 (613)
T ss_pred CeEEEecccccccceEEccccC--cccCCcCCcCCCceEEEcc----------CceEEEec--chhcchhcCChHHHhhh
Confidence 9999999999998877765543 5789999999999999998 49999999 99999999999999999
Q ss_pred ccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeC-ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEc
Q 004034 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 697 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~-G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~ 697 (778)
|.. +|||+|||+|.+|++|+|.++||++|.||.+ |+.|.|..||+.+.++|-|.+++|++ .+ ...++|.|++.
T Consensus 445 f~~--DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~---k~~~~AlIvp~ 518 (613)
T COG1022 445 FTE--DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DD---KKFLVALIVPD 518 (613)
T ss_pred ccc--cCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cC---CcceEEEEeCC
Confidence 876 8999999999999999999999999999997 99999999999999999999999998 32 34588999986
Q ss_pred CCCC------------CC-------HHHHHHHHHHHHh---hcCCCccccEEEECC-CCC-----CCCCCcccHHHHHHH
Q 004034 698 EGVP------------YS-------EELRKSLVLAVRK---QIGAFAAPDKIHWAP-GLP-----KTRSGKIMRRILRKI 749 (778)
Q Consensus 698 ~~~~------------~~-------~~l~~~l~~~l~~---~Lp~~~~P~~i~~v~-~lP-----~T~sGKi~R~~L~~~ 749 (778)
.+.- .+ .++.+.+...+.+ .+..+..+..++.++ ++. .|+.-|+.|..+.+.
T Consensus 519 ~~~l~~~a~~~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~~~~~~~E~i~~~~~~~~~~t~~~~~~t~t~klkR~~i~~~ 598 (613)
T COG1022 519 FDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGFEQIKKFVLLPKEFTPENGELTPTLKLKRHVILDR 598 (613)
T ss_pred HHHHHHHHHhccccccCCHHHHhhCHHHHHHHHHHHHHHhhcccchhhhheeeecccccccccCccccchhhhHHHHHHh
Confidence 4210 01 1122222222222 234455666666654 343 588899999999999
Q ss_pred HhcccCcCC
Q 004034 750 ASRQLDELG 758 (778)
Q Consensus 750 ~~~~~~~~~ 758 (778)
+..+++.++
T Consensus 599 ~~~~i~~~y 607 (613)
T COG1022 599 YKDEIEAVY 607 (613)
T ss_pred hhhHHHHHh
Confidence 887766554
|
|
| >PRK08308 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-59 Score=525.30 Aligned_cols=403 Identities=18% Similarity=0.200 Sum_probs=348.9
Q ss_pred ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEE
Q 004034 230 DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVI 309 (778)
Q Consensus 230 ~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~ii 309 (778)
++++||+||.++++++|+.|. +|+++|++|+|+++|++++++++|||+++|++++|+++..+.+++..+++++++++++
T Consensus 6 ~~~~ty~el~~~~~~~a~~l~-~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i 84 (414)
T PRK08308 6 DEEYSKSDFDLRLQRYEEMEQ-FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKRAGCHGLL 84 (414)
T ss_pred CceecHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHhCCCCEEE
Confidence 579999999999999999985 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCc
Q 004034 310 TSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389 (778)
Q Consensus 310 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~ 389 (778)
+++.... . .. .....++++
T Consensus 85 ~~~~~~~------------------------~------~~-------------------------------~~~~~~~~~ 103 (414)
T PRK08308 85 YGESDFT------------------------K------LE-------------------------------AVNYLAEEP 103 (414)
T ss_pred ecCcccc------------------------c------cc-------------------------------CCCCCCCCc
Confidence 8653100 0 00 001346889
Q ss_pred EEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCC
Q 004034 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD 469 (778)
Q Consensus 390 a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~ 469 (778)
++|+|||||||.||||+++|+++.. ........+++..+|+++..+|+.|.++++..++.+|..|+++++.+. ++
T Consensus 104 ~~i~~TSGtTG~PKgv~~s~~~l~~-~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~----~~ 178 (414)
T PRK08308 104 SLLQYSSGTTGEPKLIRRSWTEIDR-EIEAYNEALNCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITN----KN 178 (414)
T ss_pred eEEEECCCCCCCCcEEEEehHhHHH-HHHHHHHhhCCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCC----CC
Confidence 9999999999999999999999654 344445567888899999999999999887888999999999999864 48
Q ss_pred hhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccc
Q 004034 470 SGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTET 549 (778)
Q Consensus 470 ~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 549 (778)
+..+++.++++++|.++++|+++..|.+.... ..+++.++++|+++++++++++.+.. .++++.||+||+
T Consensus 179 ~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~------~~~l~~~~~~G~~l~~~~~~~~~~~~----~~~~~~YG~tE~ 248 (414)
T PRK08308 179 PKFALNILRNTPQHILYAVPLMLHILGRLLPG------TFQFHAVMTSGTPLPEAWFYKLRERT----TYMMQQYGCSEA 248 (414)
T ss_pred HHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc------cccccEEEEccCCCCHHHHHHHHHhC----ChhhhccCcccc
Confidence 89999999999999999999999999876431 13688999999999999999988762 579999999999
Q ss_pred cceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEc
Q 004034 550 GGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFT 629 (778)
Q Consensus 550 g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrT 629 (778)
+.+..... ...++++|+|++++++++.++. ++.|||++++ . ++||+|
T Consensus 249 ~~~~~~~~----~~~~~~~G~p~~~~~~~~~~~~------~~~gel~v~~--~---------------------~~~~~T 295 (414)
T PRK08308 249 GCVSICPD----MKSHLDLGNPLPHVSVSAGSDE------NAPEEIVVKM--G---------------------DKEIFT 295 (414)
T ss_pred CCeeecCC----CCCCCccCccCCCeEEEEecCC------CCCceEEEEc--C---------------------CceEEC
Confidence 86543211 1345789999999999987643 4579999987 1 479999
Q ss_pred CcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHH
Q 004034 630 GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKS 709 (778)
Q Consensus 630 GDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~ 709 (778)
||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++++++..++.++++++..... + .++
T Consensus 296 GDl~~~~~dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~--~---~~~ 370 (414)
T PRK08308 296 KDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEI--D---PVQ 370 (414)
T ss_pred CceEEECCCccEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCC--C---HHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999876532 2 468
Q ss_pred HHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 710 LVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 710 l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
|+++++++|++|++|..++++++||+|++||++|+.|+
T Consensus 371 l~~~l~~~l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~ 408 (414)
T PRK08308 371 LREWCIQHLAPYQVPHEIESVTEIPKNANGKVSRKLLE 408 (414)
T ss_pred HHHHHHHhCccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence 89999999999999999999999999999999999654
|
|
| >TIGR01923 menE O-succinylbenzoate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=529.50 Aligned_cols=435 Identities=23% Similarity=0.318 Sum_probs=360.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCC
Q 004034 234 TYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (778)
Q Consensus 234 TY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~ 313 (778)
||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++..++++++++++++++.
T Consensus 1 Ty~~l~~~~~~~a~~l~~~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (436)
T TIGR01923 1 TWQDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDSL 80 (436)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEE
Q 004034 314 VKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLL 393 (778)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il 393 (778)
.... .+. ...+.... .... ...........+++++|+
T Consensus 81 ~~~~--~~~---------------------~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~~~i~ 117 (436)
T TIGR01923 81 LEEK--DFQ---------------------ADSLDRIE-------------------AAGR-YETSLSASFNMDQIATLM 117 (436)
T ss_pred cccc--cee---------------------ecchHhhh-------------------hccc-ccccccccCCcCceEEEE
Confidence 3210 000 00000000 0000 000112234578999999
Q ss_pred eCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHH
Q 004034 394 YTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRS 473 (778)
Q Consensus 394 ~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~ 473 (778)
|||||||.||+|+++|+++... .......+++.++|++++..|+.|..+. ..++.++..|+++++.++ ...+
T Consensus 118 ~TSGtTG~PK~v~~s~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~------~~~~ 189 (436)
T TIGR01923 118 FTSGTTGKPKAVPHTFRNHYAS-AVGSKENLGFTEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDK------FNQL 189 (436)
T ss_pred eCCCCCCCCcEEEEehHHHHHH-HHHHHhhcCCCCCceEEEccCcHhHHHH-HHHHHHHhcCceEEecch------HHHH
Confidence 9999999999999999996544 4455567899999999999999998874 567899999999999753 2489
Q ss_pred HHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccccccccccee
Q 004034 474 WDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFM 553 (778)
Q Consensus 474 ~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~ 553 (778)
++.++++++|++.++|++++.|.+.... .+++|.++++||++++++.+++.. ++ +++++.||+||++...
T Consensus 190 ~~~l~~~~~t~~~~~P~~l~~l~~~~~~------~~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~ 259 (436)
T TIGR01923 190 LEMIANERVTHISLVPTQLNRLLDEGGH------NENLRKILLGGSAIPAPLIEEAQQ-YG---LPIYLSYGMTETCSQV 259 (436)
T ss_pred HHHHHHhCCeEEEeHHHHHHHHHhCcCC------CCceEEEEECCCCCCHHHHHHHHH-hC---CceeeEecCCccchhc
Confidence 9999999999999999999999887531 168999999999999999988765 34 7899999999998755
Q ss_pred cccCCCCCCCCCCCcCcCcCCceEEE-ECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcE
Q 004034 554 ITPLPGAWPQKPGSATFPFFGVQPVI-VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632 (778)
Q Consensus 554 ~~~~~~~~~~~~~~~G~p~~g~~~~I-vd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl 632 (778)
+.........++ ++|+|+++++++| .|+.+ +.|||+|++ +.+++||+++++.+...+ .+|||+|||+
T Consensus 260 ~~~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~------~~Gel~v~~--~~~~~gy~~~~~~~~~~~---~~~~~~TGD~ 327 (436)
T TIGR01923 260 TTATPEMLHARP-DVGRPLAGREIKIKVDNKE------GHGEIMVKG--ANLMKGYLYQGELTPAFE---QQGWFNTGDI 327 (436)
T ss_pred cCcCcccccccc-CCCccCCCcEEEEEeCCCC------CceEEEEEC--CccchhhCCChhhhhhhh---cCCCeeccce
Confidence 433222211222 4899999999999 44332 679999999 899999999876554432 2689999999
Q ss_pred EEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHH
Q 004034 633 CSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712 (778)
Q Consensus 633 ~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~ 712 (778)
+++++||++++.||.||+||++|++|++.|||++|.++|.|.+++|++.++...+..++++|+..++.. .+++.+
T Consensus 328 ~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~~ 402 (436)
T TIGR01923 328 GELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDIS-----QAKLIA 402 (436)
T ss_pred EEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCC-----HHHHHH
Confidence 999999999999999999999999999999999999999999999999987777788999998876422 468889
Q ss_pred HHHhhcCCCccccEEEECCCCCCCCCCcccHHHH
Q 004034 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746 (778)
Q Consensus 713 ~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L 746 (778)
++++.|+.|++|..|+++++||+|++||++|++|
T Consensus 403 ~l~~~l~~~~~p~~i~~~~~iP~t~~GK~~r~~L 436 (436)
T TIGR01923 403 YLTEKLAKYKVPIAFEKLDELPYNASGKILRNQL 436 (436)
T ss_pred HHHHhhhCCCCCeEEEEecCCCCCCCCceecccC
Confidence 9999999999999999999999999999999875
|
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate. |
| >PRK07768 long-chain-fatty-acid--CoA ligase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=546.37 Aligned_cols=498 Identities=19% Similarity=0.152 Sum_probs=382.1
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+++.|..++. ..|+.+++...+ ..+.+||.||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~~~~~~~~-~~~~~~~~~~~~----~~~~~ty~el~~~v~~~a~~L~~~g~~~gd~V~l~~~~~~~~~~~~la~~~~g 78 (545)
T PRK07768 4 FTEKMYANAR-TSPRGMVTGEPD----APVRHTWGEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRG 78 (545)
T ss_pred HHHHHHHHhh-CCCcceEEecCC----CceEecHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHHHHHcC
Confidence 5566667777 789999886653 26789999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHH-------HHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 282 AVHSVVFAGFSSDSL-------AQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 282 av~vpl~p~~~~~~l-------~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
++++|+++..+.+++ ..+++.++++++++++.... . .+.+.. ... .++
T Consensus 79 ~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~----~~~~~~--~~~-~~~--------- 133 (545)
T PRK07768 79 ASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLA---------A----APVLEE--KGI-RVL--------- 133 (545)
T ss_pred ccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhh---------h----hhhhcc--cCC-cee---------
Confidence 999999998886554 45677789999999765321 0 000000 000 011
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCC-cEEE
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPS-DVYW 433 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~-d~~l 433 (778)
.++++....+. ......++++++|+|||||||+||||+++|++++. ........+++.++ |+++
T Consensus 134 ------------~~~~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~-~~~~~~~~~~~~~~~d~~~ 198 (545)
T PRK07768 134 ------------TVADLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYA-NAEAMFVAAEFDVETDVMV 198 (545)
T ss_pred ------------ehhhhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHH-HHHHHHHhcCCCCCCceeE
Confidence 12222221111 22345679999999999999999999999999654 44445556777776 8999
Q ss_pred EeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc--ccccCCCCce
Q 004034 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE--YVTRYSRKSL 511 (778)
Q Consensus 434 ~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~--~~~~~~l~sL 511 (778)
+..|++|..++...++.++..|++++++.+.....++..++++++++++|++.++|.++..|...... .....++++|
T Consensus 199 ~~~p~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 278 (545)
T PRK07768 199 SWLPLFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSL 278 (545)
T ss_pred EeCCCccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchhe
Confidence 99999999987777778899999999886533334788899999999999998888887766643211 0113578899
Q ss_pred eEEEEecCCCCHHHHHHHHHH---hCCCCcceecccccccccceecccCCCC------------------------CCCC
Q 004034 512 RVLGSVGEPINPSAWRWFFNV---VGDSRCPISDTWWQTETGGFMITPLPGA------------------------WPQK 564 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~---~g~~~~~i~~~YG~TE~g~~~~~~~~~~------------------------~~~~ 564 (778)
|.++++|+++++++.+++.+. ++.....+++.||+||++..++....+. ....
T Consensus 279 r~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (545)
T PRK07768 279 RFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRR 358 (545)
T ss_pred eeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcce
Confidence 999999999999999998874 4432345999999999987543321110 0123
Q ss_pred CCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEE
Q 004034 565 PGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLT 644 (778)
Q Consensus 565 ~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~ 644 (778)
++++|+|+++++++|+|+++++++.|+.|||+++| +.+++||++++... ... ..+|||+|||++++++||+++++
T Consensus 359 ~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~-~~~--~~~g~~~TGDl~~~~~~g~l~~~ 433 (545)
T PRK07768 359 LATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRG--ESVTPGYLTMDGFI-PAQ--DADGWLDTGDLGYLTEEGEVVVC 433 (545)
T ss_pred EEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEcc--CcccccccCCCCCc-ccc--cCCCeeeccceEEEecCCEEEEE
Confidence 46899999999999999999999999999999999 89999999865432 222 23679999999999999999999
Q ss_pred eecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEe--cCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCC-
Q 004034 645 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE--HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF- 721 (778)
Q Consensus 645 GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~--~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~- 721 (778)
||.||+||++|++|+|.|||++|.+||+|.+++|+++. +...++.++++|...... ++....++.+++++.++.+
T Consensus 434 GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~~~~~~~l~~~~ 511 (545)
T PRK07768 434 GRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFE--DPAEVRRIRHQVAHEVVAEV 511 (545)
T ss_pred ccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccc--cHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998887765 333455555555544322 2222345666666655443
Q ss_pred -ccccEEEECC--CCCCCCCCcccHHHHHHHHh
Q 004034 722 -AAPDKIHWAP--GLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 722 -~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~ 751 (778)
..|..+.+++ +||+|++||++|+.|++.+.
T Consensus 512 ~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~~ 544 (545)
T PRK07768 512 GVRPRNVVVLGPGSIPKTPSGKLRRANAAELVT 544 (545)
T ss_pred CCCccEEEEeCCCcCCCCCchhHHHHHHHHhcC
Confidence 5788888886 89999999999999998764
|
|
| >KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-59 Score=517.06 Aligned_cols=536 Identities=22% Similarity=0.265 Sum_probs=413.3
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcC--CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLME 269 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e 269 (778)
.|+.+.. ++++.|.+.+. ..|+.+++-+... ..+..+.+||.|..+++.++|..|+++|+++++.|+|+.-|++|
T Consensus 69 ~~~~~~~--T~~~~f~~~~~-~~~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~lG~~~~~~VGIy~~N~pE 145 (691)
T KOG1256|consen 69 CPFDGPL--TLYEGFRRSVE-KSGNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRKLGVKEDSKVGIYAFNRPE 145 (691)
T ss_pred CCCCCcc--cHHHHhhcchh-ccCCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHHhCCCCCceEEEeccCChh
Confidence 4554443 58999999998 9999999987652 22558899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhh-cCCCccEEEEEc
Q 004034 270 LPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAK-SGISVDVCLTYE 348 (778)
Q Consensus 270 ~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~ 348 (778)
|+++++||...|++.|||...++++++.++++++...++|++++.. +...++.... ..+.++.++.++
T Consensus 146 Wiis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k-----------~~~ll~~~~~~~~~~LK~iI~~~ 214 (691)
T KOG1256|consen 146 WIISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKK-----------AEKLLEIKENDSLPSLKAIIQLD 214 (691)
T ss_pred hHHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHH-----------HHHHHhhcccccCccceeEEEec
Confidence 9999999999999999999999999999999999999999986532 2233332221 136688888887
Q ss_pred cCCccccccccCCCCcccchhhccCCCC-CCCCc-cccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH---HHHHh
Q 004034 349 NQSAMTRENTKWQDGRDIWWQDVVPKYP-TKCEV-EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT---TFKYA 423 (778)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~---~~~~~ 423 (778)
..............-...+|+++++-.. ....+ .+..|+|+|.|+|||||||.|||||+||+|++..... .....
T Consensus 215 ~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~ 294 (691)
T KOG1256|consen 215 EPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAE 294 (691)
T ss_pred CCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcc
Confidence 6532110010111112456777765442 12222 5788999999999999999999999999996553222 11111
Q ss_pred hC--CCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 424 FD--YKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 424 ~~--~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
.. ....|++++++|++|++..+...+. +..|+.+.++.+ |+..+.+-|++.++|.+.++|.+|+.+.+.-.+
T Consensus 295 ~~~~~~~~dv~lSyLPLAHi~er~~~~~~-~~~G~~IgF~~g-----D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~ 368 (691)
T KOG1256|consen 295 NAKATVGDDVYLSYLPLAHIFERVVELYT-FYIGAKIGFARG-----DILKLTDDLKELKPTVFPGVPRVLERIYEGIQK 368 (691)
T ss_pred cccccccCceEEEeCcHHHHHHHHHHHhH-hhcccEEEEecC-----ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHH
Confidence 11 2236999999999999987777654 588999999986 778888889999999999999999887432100
Q ss_pred c------------------------cccCC-------------------CCceeEEEEecCCCCHHHHHHHHHHhCCCCc
Q 004034 502 Y------------------------VTRYS-------------------RKSLRVLGSVGEPINPSAWRWFFNVVGDSRC 538 (778)
Q Consensus 502 ~------------------------~~~~~-------------------l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~ 538 (778)
. ..+.. -..+|.+++|++|+++++.+.++..+| +
T Consensus 369 ~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~g---~ 445 (691)
T KOG1256|consen 369 QVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAALG---C 445 (691)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhcC---c
Confidence 0 00000 136899999999999999999999987 8
Q ss_pred ceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhh
Q 004034 539 PISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (778)
Q Consensus 539 ~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~ 617 (778)
+|+++||+|||++.++...++. ...+++|.|+|+++++++|. +.+.-+.|..|||||+| +.++.|||+||++|.+
T Consensus 446 ~v~eGYGlTEts~g~~~~~~~d--~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG--~~Vf~GYyK~p~~T~e 521 (691)
T KOG1256|consen 446 RVLEGYGLTETSAGTTLTLPGD--NVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRG--PNVFMGYYKDPEKTAE 521 (691)
T ss_pred eeeecccccccCCceEeccCCC--CCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEec--chhceeccCChHHHhh
Confidence 9999999999996555555544 26799999999999999884 44445556689999999 9999999999999999
Q ss_pred hccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeC-ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEE
Q 004034 618 TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 696 (778)
Q Consensus 618 ~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~-G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 696 (778)
.+.. +||+||||+|+|+++|.|.++||+++.+|++ |+.|.|..||++..+.+-|.+.+|.+.. ....|+|.|++
T Consensus 522 ~ide--DGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi~V~g~s---~~~~LvaiVvp 596 (691)
T KOG1256|consen 522 AIDE--DGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQIFVLGDS---LRSFLVAIVVP 596 (691)
T ss_pred hhcc--ccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEEEEECCc---chhcEEEEEec
Confidence 8865 8999999999999999999999999999998 9999999999999999999999998643 24579999999
Q ss_pred cCCCCCC-----------------HHH----HHHHHHHHH-hhcCCCccccEEEECC------CCCCCCCCcccHHHHHH
Q 004034 697 VEGVPYS-----------------EEL----RKSLVLAVR-KQIGAFAAPDKIHWAP------GLPKTRSGKIMRRILRK 748 (778)
Q Consensus 697 ~~~~~~~-----------------~~l----~~~l~~~l~-~~Lp~~~~P~~i~~v~------~lP~T~sGKi~R~~L~~ 748 (778)
+.....+ ..+ ..++.+.-+ +.|..+..-+.|.+.+ .=-+||+-|+.|..|.+
T Consensus 597 d~e~~~~~a~~~~~~~~~eelc~n~~~k~~vl~el~~~~~~~~l~~fe~vk~v~l~~~~FsienglltPTlK~KR~~l~~ 676 (691)
T KOG1256|consen 597 DPEVLKSWAAKDGVKGTFEELCRNLDVKEAVLSELVKVGKENGLKGFEQVKKVHLLPDPFSIENGLLTPTLKIKRPQLLK 676 (691)
T ss_pred ChhhchhhHHHccCchhHHHHhcChhhHHHHHHHHHHHHhhhhccChhhEeeEEEecccccccCCccchhhhhhhHHHHH
Confidence 6542210 011 122222222 2355555556666643 22368899999999999
Q ss_pred HHhcccCcCCC
Q 004034 749 IASRQLDELGD 759 (778)
Q Consensus 749 ~~~~~~~~~~~ 759 (778)
.+++++|+++.
T Consensus 677 ~yk~~Id~mY~ 687 (691)
T KOG1256|consen 677 YYKKQIDELYK 687 (691)
T ss_pred HHHHHHHHHHh
Confidence 99999887753
|
|
| >PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-56 Score=499.01 Aligned_cols=411 Identities=29% Similarity=0.454 Sum_probs=321.1
Q ss_pred HHHhhhccCCCeEEEEE-EcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEE
Q 004034 206 LDRNIEAGLGDKVAIYW-EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284 (778)
Q Consensus 206 l~~~~~~~~pd~~Al~~-~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~ 284 (778)
|+++|+ ++||++|+++ . ++++||+||+++++++|..|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 1 f~~~a~-~~pd~~a~~~~~------~~~~Ty~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~ 73 (417)
T PF00501_consen 1 FERQAQ-RYPDRIALIDDE------GRSLTYKQLYERVRKLAAALRKLGVKKGDRVAILLPNSIEFVVAFLACLRAGAIP 73 (417)
T ss_dssp HHHHHH-HSTTSEEEEETT------TEEEEHHHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EE
T ss_pred ChhHHh-hCCCceEEEECC------CEEEEHHHHHHHHHHHhhHHHHhCCCccccccccCCccceeeeeecccccccccc
Confidence 678888 8999999998 3 7999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCc
Q 004034 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364 (778)
Q Consensus 285 vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 364 (778)
+|++|.++.+++.++++.+++++||+ .+.. +-.. +........ .......++.++..... ...
T Consensus 74 v~l~~~~~~~~~~~~l~~~~~~~ii~-~~~~------d~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~ 136 (417)
T PF00501_consen 74 VPLDPSLSEDELRHILRQSGPKVIIT-SEAV------DSEP-LKKLKSIFK-QEDPSSSIIILDRDDLP--------KKE 136 (417)
T ss_dssp EEEETTSSHHHHHHHHHHHTESEEEE-CHHH------SCHH-HHHHHHHHT-TSTTTEEEEEESHSSCT--------TCH
T ss_pred cccccccccccccccccccceeEEEE-eccc------cccc-cccchhhhc-ccccccccccccccccc--------ccc
Confidence 99999999999999999999999998 2000 0011 122222110 00123344555433210 000
Q ss_pred ccchhhccCCCCCCCCccc-cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHH-HHhhCCCCCcEEEEeCCcchhh
Q 004034 365 DIWWQDVVPKYPTKCEVEW-VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF-KYAFDYKPSDVYWCTADCGWIT 442 (778)
Q Consensus 365 ~~~~~~~l~~~~~~~~~~~-~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~-~~~~~~~~~d~~l~~~~~~~~~ 442 (778)
.. .......... .. ..++++++|+|||||||.||+|.++|++++....... ...++++ |++++.+|++|..
T Consensus 137 ~~-~~~~~~~~~~----~~~~~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~ 209 (417)
T PF00501_consen 137 AL-KSASLSDEPQ----SPEDSPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYFGLG--DRILSFLPLSHIF 209 (417)
T ss_dssp HH-HHHHHCHCSH----STTHTTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTTTTT--TEEEESS-TTSHH
T ss_pred cc-cccccccccc----cCCCCccceeEeeccccccccccccccccccccccccccccccccccC--ceEEeeccccccc
Confidence 00 0000000000 00 0579999999999999999999999999655544321 2223333 6999999999999
Q ss_pred hhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc--cccCCCCceeEEEEecCC
Q 004034 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY--VTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 443 g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~--~~~~~l~sLr~v~~gGe~ 520 (778)
+++..++.+|..|+++++++.... .+++.+++.++++++|+++++|++++.|++..... ....++++||.++++|++
T Consensus 210 g~~~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~ 288 (417)
T PF00501_consen 210 GLISALLAALFSGATLVLPSPFDL-FDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEP 288 (417)
T ss_dssp HHHHHHHHHHHCTSEEEEESSHHH-HHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST
T ss_pred cccccccccccccccccccccccc-cccccchhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 976899999999999999976432 23577899999999999999999999999843211 123478899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCC-CceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g 599 (778)
+++++++++.+.++. .+|++.||+||++.+.+.........+++++|+|+++++++|+|++ +++++.|+.|||+|+|
T Consensus 289 l~~~~~~~~~~~~~~--~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~ 366 (417)
T PF00501_consen 289 LPPDLLRRLRKAFGN--APIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRG 366 (417)
T ss_dssp -CHHHHHHHHHHHTT--SEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEES
T ss_pred CChhhcccccccccc--ccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccC
Confidence 999999999999983 5899999999999887644211112366789999999999999987 9999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeC
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS 654 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~ 654 (778)
|.++.||+++++.+.+.|.. +|||+|||+|++|+||+|+++||+||+||+|
T Consensus 367 --~~~~~gy~~~~~~~~~~~~~--~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~ 417 (417)
T PF00501_consen 367 --PNVFSGYYNDPELTAEAFID--DGWYRTGDLGRLDEDGYLYILGRSDDMIKVR 417 (417)
T ss_dssp --TTSBSEETTBHHHHHHHEET--TSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred --Cccceeeecccccccccccc--ccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence 89999999999999888764 5799999999999999999999999999986
|
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A .... |
| >KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=455.93 Aligned_cols=524 Identities=20% Similarity=0.242 Sum_probs=394.0
Q ss_pred HHHHHhhhccCCC-eEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCE-EEEEeCCChHHHHHHHHHHHhC
Q 004034 204 NCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 204 ~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~-Vai~~~~s~e~vva~LA~l~~G 281 (778)
++++++.+ +.+| ++...++ .+.-..+||.|+.+++.++|++|.++|++++++ |+|+++.+.+|+++++||++.+
T Consensus 64 ~li~~h~e-k~~dGK~f~k~~---Lg~Y~w~sy~ev~~~~~~~gsGL~~lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ 139 (678)
T KOG1180|consen 64 ELIKEHEE-KQVDGKTFEKYE---LGDYKWMSYNEVYERVHNFGSGLVKLGLKPKETKIAIFAETRAEWMITAQGCFSQN 139 (678)
T ss_pred HHHHHHhh-ccCCCeEEEEEe---ccceeeecHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEecchHHHHHHHHHHHhcC
Confidence 45566655 4444 3444443 255788999999999999999999999997776 9999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc-ccccc-
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT-RENTK- 359 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~-~~~~~- 359 (778)
...|.+...++.+.|.+-|.+++++.|||+.+.. +.+...+..+ ..++++|.++..+... .+..+
T Consensus 140 ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL---------~kl~~~l~~~----~~vk~II~~d~id~~~~~~~v~~ 206 (678)
T KOG1180|consen 140 IPVVTAYATLGEEALIHSLNETESTAIFTDSELL---------PKLKAPLKQA----KTVKHIIYFDPIDYDAAKDDVNS 206 (678)
T ss_pred CeEEEEehhcChhhhhhhhccccceEEEeCHHHH---------HHHHHHHhcc----CceeEEEEecCCCCccchhhhhh
Confidence 9999999999999999999999999999987642 2333344444 6788888887532110 00111
Q ss_pred C--CCCcccchhhccCCCCC-CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 360 W--QDGRDIWWQDVVPKYPT-KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 360 ~--~~~~~~~~~~~l~~~~~-~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
. +.-..+.+++.+.-... ..++.+..|+|+|.|+|||||||.||||+++|.|+++...........+.+.|+++.++
T Consensus 207 i~~p~i~i~Sf~~v~~lG~~~~~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~~~G~~~~v~~lg~~D~yi~yL 286 (678)
T KOG1180|consen 207 IVRPDIKIISFDDVEKLGKENEIPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAGVTGVGENVPELGPKDRYIAYL 286 (678)
T ss_pred hccCCeEEEEHHHHHhhCCcCCCCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhhhhhhcccCcccCCCceEEEec
Confidence 0 11223455555543322 23445558899999999999999999999999997766666566666889999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChh-H----HHHHHHHhCccEEEecHHHHHHHHhcCCcccc-------
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG-R----SWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT------- 504 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~-~----~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~------- 504 (778)
|+.|+..+.+++ .++..|+++-..+..... |.. . .---+...|+|++.++|.++..+.+.-.+...
T Consensus 287 PLAHIlEl~aE~-~~ft~G~~iGY~S~~TLt-dts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k 364 (678)
T KOG1180|consen 287 PLAHILELTAEL-VCFTWGGRIGYSSPLTLT-DTSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQK 364 (678)
T ss_pred hHHHHHHHHHHH-HHHhhCCEeecCCcceec-ccchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHH
Confidence 999999988775 578899988765432111 111 0 01123467899999999988877442100000
Q ss_pred --------------c-------------------CCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccc
Q 004034 505 --------------R-------------------YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551 (778)
Q Consensus 505 --------------~-------------------~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~ 551 (778)
. ..-..||.+++||.||+++..+++...+. |++..+||.||+++
T Consensus 365 ~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic~C---~Pv~qGYGLTEtca 441 (678)
T KOG1180|consen 365 KLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNICFC---CPVLQGYGLTETCA 441 (678)
T ss_pred HHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHhcc---ccccccccccchhc
Confidence 0 00136999999999999999999888875 79999999999987
Q ss_pred eecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCC--eeeEEEEecCCCcccccccCChhhhhhhccCCCCC--e
Q 004034 552 FMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGE--CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--Y 626 (778)
Q Consensus 552 ~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g--~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~ 626 (778)
..+...+.. ...+.+|.|++-++++++|= +|--.+.+ -.|||+|+| +++..|||++++.+.+.|.. .+| |
T Consensus 442 ~~tv~e~~d--~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G--~~vt~gY~kn~ekT~e~ft~-~~G~~W 516 (678)
T KOG1180|consen 442 AATVLEPED--FSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGG--PNVTMGYYKNEEKTKEDFTV-EDGQRW 516 (678)
T ss_pred ccEecChhh--cccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecC--CccChhhhCChhhhhhhcee-cCCcEE
Confidence 655443332 35578999999999999982 32222111 379999999 99999999999999999976 567 9
Q ss_pred EEcCcEEEEecCCeEEEEeecCCEEEe-CceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC-----
Q 004034 627 YFTGDGCSRDKDGYHWLTGRVDDVINV-SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV----- 700 (778)
Q Consensus 627 yrTGDl~~~~~dG~l~~~GR~dd~Iki-~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~----- 700 (778)
|+|||+|++.+||+|.|++|++|.||. +|+-|+++-||++++..|-|...+|.+-. ....++++||+.++.
T Consensus 517 F~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~p~V~NICvyAd~---~~s~~VaiVVPn~~~lt~lA 593 (678)
T KOG1180|consen 517 FRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSSPYVDNICVYADS---NKSKPVAIVVPNQKHLTKLA 593 (678)
T ss_pred EeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcCcchhheEEeccc---ccceeEEEEcCCchHHHHHH
Confidence 999999999999999999999999998 59999999999999999999999998653 345799999997531
Q ss_pred -----CC--------CHHH----HHHHHHHH-HhhcCCCccccEEEECCCCCCCC-CC------cccHHHHHHHHhcccC
Q 004034 701 -----PY--------SEEL----RKSLVLAV-RKQIGAFAAPDKIHWAPGLPKTR-SG------KIMRRILRKIASRQLD 755 (778)
Q Consensus 701 -----~~--------~~~l----~~~l~~~l-~~~Lp~~~~P~~i~~v~~lP~T~-sG------Ki~R~~L~~~~~~~~~ 755 (778)
.. +..+ .++|.++- .+.|..+.+|..|++.+ .|.|| || |+.|+.++..+..+++
T Consensus 594 ~k~Gi~~~~~e~lc~d~k~~~~v~k~L~~~ak~~~L~~iEip~~I~l~~-e~WTPenGlvT~A~KLKRk~I~~~~k~ei~ 672 (678)
T KOG1180|consen 594 EKAGISGSTWEELCEDKKVVKAVLKELIEAAKSQKLERIEIPAKIVLSP-EPWTPENGLVTAALKLKRKEILAAYKKEID 672 (678)
T ss_pred HHcCCChhhHHHHhccHHHHHHHHHHHHHHHHhcccccccccceeEecC-CCcCCCccccHHHHHhhHHHHHHHHHHHHH
Confidence 11 1112 23333333 44688999999999885 46665 44 9999999999988876
Q ss_pred cCC
Q 004034 756 ELG 758 (778)
Q Consensus 756 ~~~ 758 (778)
.++
T Consensus 673 ~~Y 675 (678)
T KOG1180|consen 673 RLY 675 (678)
T ss_pred HHh
Confidence 654
|
|
| >COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=505.39 Aligned_cols=494 Identities=20% Similarity=0.226 Sum_probs=398.4
Q ss_pred CCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCccccccc
Q 004034 102 SGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSEN 181 (778)
Q Consensus 102 ~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (778)
+.+++||+++.+.++ .+...+.|.+++|++.++.++.++|..++..++.+|+..++++.. +...+. . . ++
T Consensus 148 ~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~l-l~~~e~--~-~--~~ 217 (642)
T COG1020 148 TPAAKLDLALAVVEG----GLRLSFDYARELFDAETIERELRHFLQLLAALADAPRTSLSALPL-LLPSER--E-V--WN 217 (642)
T ss_pred CcccccceEEEEEeC----ceEEEEEeecccCCHHHHHHHHHHHHHHHHHHHhCcccCcccCCC-CCHHHH--h-h--cc
Confidence 567899998886633 677899999999999999999999999999999999977766642 222211 0 0 11
Q ss_pred ccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004034 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (778)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Va 261 (778)
. .+......-+++.+|.++++ +.|+++|+.+. ..++||+||+.+++++|+.|++.|++++++|+
T Consensus 218 -~--------~~~~~~~~~~i~~~f~~~a~-~~p~~~a~~~~------~~~lty~el~~~a~~la~~l~~~g~~~~~~V~ 281 (642)
T COG1020 218 -A--------LAAPIPLRLTIHLLFEEQAA-TTPDAVALVRG------GQQLTYAELDARANRLARLLISLGVGPGETVA 281 (642)
T ss_pred -c--------cccCCCccchHHHHHHHHHH-hCCCceeEecC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCeEE
Confidence 0 11111111268999999998 99999999986 68999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004034 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (778)
Q Consensus 262 i~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (778)
++++++++++++++|++|+|++|+|+||.+|.+|+.++++++++++++++........ ..
T Consensus 282 i~~~rs~~~i~~~l~ilkaG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~--------------------~~ 341 (642)
T COG1020 282 ILADRSLELVVALLAVLKAGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDV--------------------GL 341 (642)
T ss_pred EEcCCCHHHHHHHHHHHhcCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccc--------------------cC
Confidence 9999999999999999999999999999999999999999999999999843321000 00
Q ss_pred cEEEEEccCCccccccccCCCCcccchhhccCCCCCCCC-ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHH
Q 004034 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE-VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTF 420 (778)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~ 420 (778)
.. +.++.. ....+...+ .....+++++|++|||||||+||||+++|++. .+...+.
T Consensus 342 ~~-~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ayiiytsgstg~Pkgv~~~h~~~-~~~~~~~ 398 (642)
T COG1020 342 PG-LALDDA---------------------LSEIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRAL-ANLLNDA 398 (642)
T ss_pred Cc-cccccc---------------------cccCCccCcccccCCCCCeEEEEEccCCCCCCCCceecCHHH-HHHHHHH
Confidence 00 111100 000000011 23345689999999999999999999999995 4466666
Q ss_pred HHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC
Q 004034 421 KYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500 (778)
Q Consensus 421 ~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~ 500 (778)
...+.+..+|+++...++.|+.+ ++.+|.+++.|+++++.+.... .++..+.+.+.++++|++..+|.++..++....
T Consensus 399 ~~~~~~~~~d~~l~~~s~~fD~~-~~~~f~~l~~G~~l~~~~~~~~-~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~ 476 (642)
T COG1020 399 GARFGLDADDRVLALASLSFDAS-VFEIFGALLEGARLVLAPALLQ-VDPAALLELLEAQGITVLLLVPLLLRLLLLAAL 476 (642)
T ss_pred HHhcCCCcccEEeecCCcccchh-HHHHHHHHhCCCEEEecCcccc-CCHHHHHHHHHHcCCEEEEecHHHHHHHHhchh
Confidence 66799999999999999999986 8899999999999999887544 489999999999999999999999999987632
Q ss_pred cccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEE
Q 004034 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIV 580 (778)
Q Consensus 501 ~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Iv 580 (778)
..........+|.+++|||.++.++...+...... ...+.|.||+||++................++|+|++|++++|+
T Consensus 477 ~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~-~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~il 555 (642)
T COG1020 477 APDLISPCERLRQLLSGGEALPLALVQRLLQLAAL-ARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYIL 555 (642)
T ss_pred hccccCCcccccEEEEcCCCCCHHHHHHHHHhccc-cceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEE
Confidence 21112233459999999999999999988876543 36799999999976544322111111114689999999999999
Q ss_pred CCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCH
Q 004034 581 DEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGT 660 (778)
Q Consensus 581 d~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~ 660 (778)
|+.++++|.|+.|||+|.| .++++||+++++.+...|+.. .+|+|||++++++||.+.++||.|+|||++|+||++
T Consensus 556 d~~~~~~p~gv~gel~i~g--~~~a~gy~~~p~lt~~~f~~~--~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Riel 631 (642)
T COG1020 556 DQGLRPLPLGVPGELYIAG--LGLALGYLNRPDLTAERFIAL--RLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIEL 631 (642)
T ss_pred CCCCCcCCCCCCeeeEECC--cchhhhhcCChhhhHHHhhhc--cCccCCCeeeECCCCeEEEeccccceeEeceEecCc
Confidence 9999999999999999999 899999999999999998764 499999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 004034 661 AEVESALVSHP 671 (778)
Q Consensus 661 ~eIE~~L~~~p 671 (778)
+|||..+.+||
T Consensus 632 ~eie~~l~~~~ 642 (642)
T COG1020 632 GEIEAALAEQP 642 (642)
T ss_pred HHHHHHHhcCC
Confidence 99999999886
|
|
| >TIGR01733 AA-adenyl-dom amino acid adenylation domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=458.97 Aligned_cols=397 Identities=24% Similarity=0.286 Sum_probs=327.6
Q ss_pred cHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcC
Q 004034 234 TYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312 (778)
Q Consensus 234 TY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~ 312 (778)
||.||.+.++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++++++
T Consensus 1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~ 80 (408)
T TIGR01733 1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS 80 (408)
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence 899999999999999998 8999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCC-CCCCCccccCCCCcEE
Q 004034 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLF 391 (778)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~ 391 (778)
......+. .....+.++... ....... ..........++++++
T Consensus 81 ~~~~~~~~-------------------~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~ 124 (408)
T TIGR01733 81 ALASRLAG-------------------LVLPIILVDPLE-----------------LAALDDAPAPPPPDAPSGPDDLAY 124 (408)
T ss_pred chhhhccc-------------------cCCceEEechhh-----------------hhhcccccccccccCCCCCCCcEE
Confidence 64321100 000111111100 0000000 0000111145789999
Q ss_pred EEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChh
Q 004034 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSG 471 (778)
Q Consensus 392 Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~ 471 (778)
|+|||||||.||+|+++|++++.. .......+++.++|++++..|+.|..+ .+.++.++..|+++++++..... .+.
T Consensus 125 i~~TSGTtG~pK~v~~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~-~~~ 201 (408)
T TIGR01733 125 VIYTSGSTGRPKGVVVTHRSLVNL-LAWLARRYGLDPDDRVLQFASLSFDAS-VEEIFGTLLAGATLVVPPEDEER-DAA 201 (408)
T ss_pred EEEcCCCCCCCCEEEeccHHHHHH-HHHHHHhcCCCCCceEEEecCCccchh-HHHHHHHHhCCCEEEEcChhhcc-CHH
Confidence 999999999999999999996544 444555788889999999999999987 56789999999999998764332 578
Q ss_pred HHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccc
Q 004034 472 RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG 551 (778)
Q Consensus 472 ~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~ 551 (778)
.+.++++++++|.+.++|++++.|++... ..+++||.++++|+++++++++++.+.++ ++.+++.||+||++.
T Consensus 202 ~~~~~~~~~~~t~l~~~p~~~~~l~~~~~-----~~~~~l~~v~~~g~~~~~~~~~~~~~~~~--~~~i~~~YG~tE~g~ 274 (408)
T TIGR01733 202 LLAALIAEHPVTVLNLTPSLLALLAAALP-----PALASLRLVILGGEALTPALVDRWRARGP--GARLINLYGPTETTV 274 (408)
T ss_pred HHHHHHHHcCceEEEeCHHHHHHHHHhhh-----hcccCceEEEEeCccCCHHHHHHHHHhCC--CcEEEecccCCceEE
Confidence 89999999999999999999999998753 46789999999999999999999999987 478999999999997
Q ss_pred eeccc-CCCCCCC--CCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC----CCC
Q 004034 552 FMITP-LPGAWPQ--KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFP 624 (778)
Q Consensus 552 ~~~~~-~~~~~~~--~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~----~~~ 624 (778)
++... ....... ++.++|+|+++++++|+|+++++++.|+.|||+|++ +.++.||+++++.+...+.. ..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~ 352 (408)
T TIGR01733 275 WSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGG--PGVARGYLNRPELTAERFVPDPFAGGD 352 (408)
T ss_pred EEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecC--ccccccccCChhhhhcceeeCCCCCCC
Confidence 66422 1111111 277899999999999999999999999999999999 89999999999877766542 223
Q ss_pred C--eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 625 G--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 625 G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| ||+|||++++|++|++++.||.||+|+++|++|+|.|||++|.+||.|.+|+|
T Consensus 353 ~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v 408 (408)
T TIGR01733 353 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV 408 (408)
T ss_pred CceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence 4 99999999999999999999999999999999999999999999999999875
|
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. |
| >KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=435.02 Aligned_cols=504 Identities=23% Similarity=0.296 Sum_probs=392.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|.++|+ ++|+++|+++.++ .+++||+|+++.++|+|+.|...|++.||.|+|+|+|.+|++..-|+.+|+
T Consensus 78 ti~~~F~~~vr-r~p~k~aii~~~~----~~~~Tf~e~~~~s~~~A~~~~~~~l~~GD~VAL~men~pefv~lWlGLaKl 152 (649)
T KOG1179|consen 78 TIAELFLSQVR-RQPDKPAIIYEGP----FQSLTFAELDARSNRVANYLHAEGLKAGDVVALLMENRPEFVALWLGLAKL 152 (649)
T ss_pred cHHHHHHHHHH-hCCCccEEEEeCC----CceeeHHHHHHHHHHHHHHHHHhhcccCCEEEEecCCChhHHHHHHhHHhh
Confidence 47899999999 9999999999943 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++...||++.-.+.|.|-|..++++.+|+..+.. ..+.++++.+... .-.++..+...
T Consensus 153 Gv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~---------~~~~e~~~~l~~~---~i~~~~~~~~~--------- 211 (649)
T KOG1179|consen 153 GVITAFINTNLRGEPLLHSITVSGARALVVGPELL---------NALEEILPLLIKN---GIHVFSLGPTS--------- 211 (649)
T ss_pred CceeeeeccccccchhhhhhhhcCceEEEECHHHH---------HHHHhcchhhhhc---cceEEecCCCC---------
Confidence 99999999999999999999999999999987743 3333333332111 01122222111
Q ss_pred CCCcccchhhccCCCCCCC----CccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 361 QDGRDIWWQDVVPKYPTKC----EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~----~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
.+....++...++..+... .....+..+++..||||||||.||..+++|.-++ ..+..+-..++++++|+++..+
T Consensus 212 ~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~-~~a~g~~~~~g~~~~DvvY~~l 290 (649)
T KOG1179|consen 212 VPDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYL-QGAAGFYYVFGMTADDVVYTTL 290 (649)
T ss_pred CCchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHH-HHHHHHHHHhCCCccceEEEcc
Confidence 1112223333333332222 2234566789999999999999999999999854 4455466789999999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
|++|.++.+..+-++|..|+|+|+-.. ++...||+-+.+|+||++.-.--+.|.|+..+.... ..-..+|..+
T Consensus 291 PLYHsaa~ilGi~~~l~~GaT~VlrkK----FSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~--er~HkVRla~- 363 (649)
T KOG1179|consen 291 PLYHSAAGILGIGGCLLHGATVVLRKK----FSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE--ERQHKVRLAY- 363 (649)
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEecc----cchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChh--hcCceEEEEe-
Confidence 999999999999999999999999654 699999999999999999999999999998876432 2345677766
Q ss_pred ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCc------CcCCceEEEEC---------
Q 004034 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATF------PFFGVQPVIVD--------- 581 (778)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~------p~~g~~~~Ivd--------- 581 (778)
|..|.+++|+.|.++||. ..|.+.||+||...-.+ +..+ +-|.+|+ -+.-+++.=+|
T Consensus 364 -GNGLR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~-N~d~----~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd 435 (649)
T KOG1179|consen 364 -GNGLRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLV-NYDG----RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRD 435 (649)
T ss_pred -cCCCCchHHHHHHHHcCC--CeEEEEeccccCcceee-eecC----ccccccchhhhhhhccceEEEEecCCCCceeec
Confidence 888999999999999995 67999999999876433 3221 1222222 11122222223
Q ss_pred CCC--ceeCCCeeeEEEEecCCCc---ccccccCChhhhh----hhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEE
Q 004034 582 EKG--VEIEGECSGYLCIKSSWPG---AFRTLYGDHERYE----TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652 (778)
Q Consensus 582 ~~g--~~~~~g~~GEL~v~g~~p~---v~~gY~~~~~~~~----~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Ik 652 (778)
++| .+|++|++|.|+-+=.-.. -+.||.+..+.+. .+.|.+.+-||.|||+-.+|+.|++||.+|..|.+.
T Consensus 436 ~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFR 515 (649)
T KOG1179|consen 436 SQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFR 515 (649)
T ss_pred CCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCcee
Confidence 333 3578999997764421122 3789999654443 344565555999999999999999999999999999
Q ss_pred eCceeeCHHHHHHHHhcCCccceEEEEEEecCCC-CeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECC
Q 004034 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVK-GQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP 731 (778)
Q Consensus 653 i~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~-~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~ 731 (778)
-.|++|++.|||++|.....+.|+.|.|+.-+.. |..=.|.|+.++....+ .+++-+++++.||+|+.|..+.+++
T Consensus 516 WKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d---~~~l~~~l~~~LP~YA~P~FlRl~~ 592 (649)
T KOG1179|consen 516 WKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKD---LEKLYQHLRENLPSYARPRFLRLQD 592 (649)
T ss_pred ecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccch---HHHHHHHHHhhCccccchHHHHHHh
Confidence 9999999999999999999999999999986643 33334555555554433 6789999999999999999999999
Q ss_pred CCCCCCCCcccHHHHHHH
Q 004034 732 GLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 732 ~lP~T~sGKi~R~~L~~~ 749 (778)
++++|.+=|..+..|.+.
T Consensus 593 ~i~~TgTFKl~K~~L~~e 610 (649)
T KOG1179|consen 593 EIEKTGTFKLQKTELQKE 610 (649)
T ss_pred hhhcccchhhHHHHHHHc
Confidence 999999999999998875
|
|
| >PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=422.76 Aligned_cols=324 Identities=23% Similarity=0.269 Sum_probs=271.9
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcC
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEG 463 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~ 463 (778)
..++|+++|+|||||||.||||+++|+++...... .... +...++++...|++|+.++ ..++.+++.|+++++++.
T Consensus 32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~-~~~~--~~~~~~~~~~~p~~~~~g~-~~~~~~l~~g~~~v~~~~ 107 (358)
T PRK07824 32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADA-THDR--LGGPGQWLLALPAHHIAGL-QVLVRSVIAGSEPVELDV 107 (358)
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHH-HHhc--cCCCCeEEEECChHHHHHH-HHHHHHHHcCCeEEecCc
Confidence 34689999999999999999999999996544332 2222 3345788999999999984 567788999999988543
Q ss_pred CCCCCChhHHHHHHHHhC--ccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee
Q 004034 464 APTYPDSGRSWDIVDKYK--VTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 464 ~~~~~~~~~~~~~i~~~~--vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
... +++..+++.+++++ +++...+|+.+..++.... ...+++++|.+++|||++++++++++.+. + ++++
T Consensus 108 ~~~-~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~---~~~~~~~l~~i~~gG~~l~~~~~~~~~~~-~---~~v~ 179 (358)
T PRK07824 108 SAG-FDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA---ATAALAELDAVLVGGGPAPAPVLDAAAAA-G---INVV 179 (358)
T ss_pred CCC-cCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc---ccCCcccceEEEECCCCCCHHHHHHHHhc-C---CcEE
Confidence 222 58999999999998 5566778988887766533 22467899999999999999999988753 4 7899
Q ss_pred cccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC
Q 004034 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (778)
Q Consensus 542 ~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~ 621 (778)
+.||+||++..+. ..|+|+++++++|.| |||+++| |.++.||+++++.. .+.
T Consensus 180 ~~YG~TE~~~~~~------------~~G~~~~g~~v~i~~-----------Gei~v~g--~~~~~gY~~~~~~~--~~~- 231 (358)
T PRK07824 180 RTYGMSETSGGCV------------YDGVPLDGVRVRVED-----------GRIALGG--PTLAKGYRNPVDPD--PFA- 231 (358)
T ss_pred ecccCCccCCCcC------------cCceeCCCCEEEecC-----------CEEEEec--CccccccCCCcccc--ccc-
Confidence 9999999875321 258899999999843 8999999 89999999988632 222
Q ss_pred CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCC
Q 004034 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP 701 (778)
Q Consensus 622 ~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~ 701 (778)
.+|||+|||++++ +||+++++||.||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++++|+.+.+..
T Consensus 232 -~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~ 309 (358)
T PRK07824 232 -EPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPA 309 (358)
T ss_pred -CCCceecccEEEE-eCCEEEEEeccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCC
Confidence 3679999999999 89999999999999999999999999999999999999999999999888899999998775443
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 702 ~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.. .++|++++++.|+.|++|..|+++++||+|++||++|++|++++.+
T Consensus 310 ~~---~~~i~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 357 (358)
T PRK07824 310 PT---LEALRAHVARTLDRTAAPRELHVVDELPRRGIGKVDRRALVRRFAG 357 (358)
T ss_pred cC---HHHHHHHHHhhCccccCCCEEEEecCCCCCCCccccHHHHHHHhhc
Confidence 33 6789999999999999999999999999999999999999998863
|
|
| >PTZ00297 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-44 Score=439.43 Aligned_cols=498 Identities=15% Similarity=0.071 Sum_probs=354.5
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
+|.+-...+++.++|++.++ ++|+++|+.+... .+..+.+||+|+.+++.++|.+|+++|+++||+|+|+++|++||+
T Consensus 419 ~~~~~~~~~Tl~dll~~~a~-~~pd~~al~~~~~-~g~~~~lTY~El~~~V~~lAa~L~~lGV~~GDrVaIls~N~~Ewv 496 (1452)
T PTZ00297 419 EYNPLAGVRSLGEMWERSVT-RHSTFRCLGQTSE-SGESEWLTYGTVDARARELGSGLLALGVRPGDVIGVDCEASRNIV 496 (1452)
T ss_pred cCCCcccCCCHHHHHHHHHH-HCCCCeEEEEecc-CCCceEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 55555556678899999998 8999999974311 123578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (778)
++.+||+++|++.||+++ +.+++.++++++++++||+++... ..+.+ .. ...++++++++...
T Consensus 497 ia~lA~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l---------~kl~~---i~---~~~Lr~IIv~d~~~ 559 (1452)
T PTZ00297 497 ILEVACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSV---------AAILT---CR---SRKLETVVYTHSFY 559 (1452)
T ss_pred HHHHHHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHH---------HHHHh---hc---ccCCcEEEEECCCc
Confidence 999999999999999985 467899999999999999975431 11111 11 13577888875321
Q ss_pred ccccccccCC-CCcccchhhccCCCCC--CCCccccCCCCcEEEEe---CCCCCCCCceEEEccchHHHHHHHHHHHh--
Q 004034 352 AMTRENTKWQ-DGRDIWWQDVVPKYPT--KCEVEWVDAEDPLFLLY---TSGSTGKPKGVLHTTGGYMVHTATTFKYA-- 423 (778)
Q Consensus 352 ~~~~~~~~~~-~~~~~~~~~~l~~~~~--~~~~~~~~~~d~a~Il~---TSGSTG~PKgV~~th~~~l~~~~~~~~~~-- 423 (778)
.......... ....+.|++.++.... .......+++|++.|+| ||||||.||||++||+|++.+........
T Consensus 560 ~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~ 639 (1452)
T PTZ00297 560 DEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVL 639 (1452)
T ss_pred ccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccc
Confidence 0000000000 0112446666654321 11123347889999996 99999999999999999766554433211
Q ss_pred hCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCccc
Q 004034 424 FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYV 503 (778)
Q Consensus 424 ~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~ 503 (778)
....++|++++++|++|+++. ...+.++..|+++.. ++++.+++.|+++++|++.++|++++.+........
T Consensus 640 ~~~~~~D~~Ls~LPLaHI~er-~~~~~~l~~G~~I~~-------~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~ 711 (1452)
T PTZ00297 640 PSSFKKHLMVHFTPFAMLFNR-VFVLGLFAHGSAVAT-------VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRAN 711 (1452)
T ss_pred cCCCCCCEEEEechHHHHHHH-HHHHHHHHcCCEEEe-------CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHh
Confidence 245678999999999999884 455677899999863 378899999999999999999999997754311000
Q ss_pred c------------------------cCC----------------CCceeEEEEec--CCCCHHHHHHHHHHhCCCCccee
Q 004034 504 T------------------------RYS----------------RKSLRVLGSVG--EPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 504 ~------------------------~~~----------------l~sLr~v~~gG--e~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
. +.. =..+|.+++|| ++++..+.. .+++.
T Consensus 712 ~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~~~l~~---------~i~i~ 782 (1452)
T PTZ00297 712 ERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTSFSLLE---------HISVC 782 (1452)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccChHHhC---------CceEE
Confidence 0 000 03688888887 355544322 26688
Q ss_pred cccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC
Q 004034 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (778)
Q Consensus 542 ~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~ 621 (778)
.+||.||+. +.+.++. .. ..|.|+|+++++|.|.....-. +..|||++++ ++|++.|.+.+
T Consensus 783 ~g~glTE~~---~~~~~~~--~~--~~G~PlpgvEvKI~~~~E~~~~-~~~GEIlvr~---------~kdpe~T~e~~-- 843 (1452)
T PTZ00297 783 YVPCLREVF---FLPSEGV--FC--VDGTPAPSLQVDLEPFDEPSDG-AGIGQLVLAK---------KGEPRRTLPIA-- 843 (1452)
T ss_pred EecceEEee---eecCCCC--cc--cCCeecCceEEEEcccccccCC-CCCCeEEEEE---------CCChHHHHHhh--
Confidence 899999953 2233322 12 2399999999999863111011 1359999965 47888887631
Q ss_pred CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeC-ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC
Q 004034 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS-GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV 700 (778)
Q Consensus 622 ~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~-G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~ 700 (778)
+||+ +||+|.|+||++|+||.+ |+.|.|..||+.+.++|.|.+++|+|... ..++|+|+++...
T Consensus 844 --~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~----k~lvALVvpd~e~ 908 (1452)
T PTZ00297 844 --AQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPS----RPIIAIVSPNRDT 908 (1452)
T ss_pred --CcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCC----CceEEEEEeCHHH
Confidence 4564 799999999999999997 99999999999999999999999997543 2389999886311
Q ss_pred C--------------------CCHHHHH----HHHHHH---Hh--hcCCCccccEEEECC-CC-----CCCCCCcccHHH
Q 004034 701 P--------------------YSEELRK----SLVLAV---RK--QIGAFAAPDKIHWAP-GL-----PKTRSGKIMRRI 745 (778)
Q Consensus 701 ~--------------------~~~~l~~----~l~~~l---~~--~Lp~~~~P~~i~~v~-~l-----P~T~sGKi~R~~ 745 (778)
- ..+++.+ .+++.+ .+ .+..+.+++.|++++ +| -+|++.|+.|+.
T Consensus 909 l~~~wa~~~gi~~~~~~~~~~~~~el~~~~~~~v~~~i~~V~~~n~l~~~ei~k~~~Ll~~~Ft~enGlLTPTlKlKR~~ 988 (1452)
T PTZ00297 909 VEFEWRQSHCMGEGGGPARQLGWTELVAYASSLLTADFACIAKENGLHPSNVPEYVHLHPHAFKDHSTFLTPYGKIRRDA 988 (1452)
T ss_pred HHHHHHHHcCCCccccccccCCHHHHHHhHHHHHHHHHHHHHHHhCcCccceeeEEEEeCCCCCCCCCcCChhhhhhHHH
Confidence 0 0122211 233332 21 256678888777764 55 479999999999
Q ss_pred HHHHHhcccCcCCC
Q 004034 746 LRKIASRQLDELGD 759 (778)
Q Consensus 746 L~~~~~~~~~~~~~ 759 (778)
+.+.+..+++++++
T Consensus 989 I~~kY~~~Ie~LY~ 1002 (1452)
T PTZ00297 989 VHSYFSSVIERFYS 1002 (1452)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999988877664
|
|
| >TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=360.53 Aligned_cols=290 Identities=22% Similarity=0.297 Sum_probs=232.5
Q ss_pred CCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCC--CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCC
Q 004034 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP--SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGA 464 (778)
Q Consensus 387 ~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~--~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~ 464 (778)
++.++|+|||||||.||||+++|+++.. ....+...+++.. .|++++.+|++|+.++.+.++.++..|+++++...
T Consensus 95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~- 172 (386)
T TIGR02372 95 PTARFTFATSGSTGTPKPVTHSWAALLS-EAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAA- 172 (386)
T ss_pred CCceEEEECCCCCCCCceeEeeHHHHHH-HHHHHHHHhCcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCC-
Confidence 5588999999999999999999999544 3444455566644 46899999999998887888889999999998753
Q ss_pred CCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceeccc
Q 004034 465 PTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTW 544 (778)
Q Consensus 465 ~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~Y 544 (778)
+++..+++.++.+ |++.++|++++.|.+.. .+++++|. ++||+++++++++.+.+. +. ..+++.|
T Consensus 173 ---~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~--~~v~~~Y 237 (386)
T TIGR02372 173 ---APASGIMRHARPG--DLIVGTPFIWEQLADLD------YRLPGVVG-VSSGAPSTAATWRCLLAA-GL--ARLLEVY 237 (386)
T ss_pred ---CChHHHHHhhccC--CEEEECcHHHHHHHhhC------cCCCccee-EecCCCCCHHHHHHHHHh-cc--cchhhee
Confidence 4777888887653 89999999999998753 24667876 688999999999999875 42 3689999
Q ss_pred ccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCC
Q 004034 545 WQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP 624 (778)
Q Consensus 545 G~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~ 624 (778)
|+||++++.+.. .+...|+|++++++.+ | ++.. .| | .
T Consensus 238 G~TEt~~i~~~~-------~~~~~~~~~p~~~~~~-~-~~~~-----------~g--~---------------------~ 274 (386)
T TIGR02372 238 GATETGGIGLRE-------APDDPFRLLPDLACFA-D-TLSS-----------AG--L---------------------A 274 (386)
T ss_pred cccccccccccc-------CCCCCcccCCCccccC-C-CccC-----------CC--c---------------------c
Confidence 999998754321 1234567777766543 1 1110 02 1 1
Q ss_pred CeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCH
Q 004034 625 GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE 704 (778)
Q Consensus 625 G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~ 704 (778)
.|++|||+++||++|+|+|+||+||+||++|++|+|.|||++|.+||+|.+|+|+. .++++.|+|+++++... +
T Consensus 275 ~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~~v~~-----~g~~~~a~vv~~~~~~~-~ 348 (386)
T TIGR02372 275 RRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAAAVRL-----DGRRLKAFIVVAEDADE-A 348 (386)
T ss_pred ceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEEEEEc-----CCceEEEEEEECCCCCh-H
Confidence 26899999999999999999999999999999999999999999999999998862 45789999998865432 3
Q ss_pred HHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCccc
Q 004034 705 ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742 (778)
Q Consensus 705 ~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~ 742 (778)
.+.++|+++++++|+.|++|..|+++++||+|++||++
T Consensus 349 ~~~~~l~~~~~~~L~~~~~P~~i~~~~~lP~t~~GKi~ 386 (386)
T TIGR02372 349 ELEIELRATAARHLPAPARPDRFRFGTELPRTGAGKLA 386 (386)
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEcccCCCCCCCCcC
Confidence 35679999999999999999999999999999999985
|
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names. |
| >TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=344.31 Aligned_cols=329 Identities=18% Similarity=0.196 Sum_probs=245.4
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
.+.+++++++|||||||.||+|.++|.++..+... .....+++.++|++++..++++..+.....+.++..|++++..
T Consensus 72 ~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 151 (422)
T TIGR02155 72 VPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAAGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI 151 (422)
T ss_pred CChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHcCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence 35678899999999999999999999986443222 2223468899999998777766544444456778899999877
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
... +++.+++.|+++++|++.++|+++..|++............+||.++++||+++++..+++.+.+| ++++
T Consensus 152 ~~~----~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g---~~v~ 224 (422)
T TIGR02155 152 SGG----QTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLG---MKAT 224 (422)
T ss_pred CCC----CHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhC---CceE
Confidence 542 578899999999999999999999998865321111122358999999999999999999999987 7899
Q ss_pred cccccccccce-ecccCCCCCCCCCCCcCcCcC--CceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhh
Q 004034 542 DTWWQTETGGF-MITPLPGAWPQKPGSATFPFF--GVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (778)
Q Consensus 542 ~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~--g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~ 617 (778)
+.||+||+++. +...+.. ...|.++. +..++|+|+ ++++++.|+.|||++++. . ..
T Consensus 225 ~~YG~tE~~~~~~~~~~~~------~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~--~------------~~ 284 (422)
T TIGR02155 225 DIYGLSEVIGPGVAMECVE------TQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL--T------------KE 284 (422)
T ss_pred ecccchhhcCCceeecccc------cCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC--C------------cc
Confidence 99999998532 2211110 11233433 567789994 899999999999999982 1 11
Q ss_pred hccCCCCCeEEcCcEEEEecC-C-----eEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEE
Q 004034 618 TYFKPFPGYYFTGDGCSRDKD-G-----YHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 691 (778)
Q Consensus 618 ~~~~~~~G~yrTGDl~~~~~d-G-----~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lv 691 (778)
. + ..+||+|||+++++++ | .+++.||.||+||++|.+|+|.|||++|.+||+|...+++.+......+.+.
T Consensus 285 ~-~--p~~ry~TGDl~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~ 361 (422)
T TIGR02155 285 A-L--PVIRYRTRDLTRLLPGTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELT 361 (422)
T ss_pred c-c--ceeeEEcCcEEEEECCCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEE
Confidence 1 1 1359999999999886 4 5789999999999999999999999999999999855555565544456788
Q ss_pred EEEEEcCCCC------CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHH
Q 004034 692 AFVTLVEGVP------YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRR 744 (778)
Q Consensus 692 a~Vv~~~~~~------~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~ 744 (778)
++|+..++.. ..+.+.++|++.+++.++.+.. ..|+.+++||+|. ||+.|.
T Consensus 362 ~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-v~~~~~~~lp~~~-GK~~~~ 418 (422)
T TIGR02155 362 LKVELKPESYTLRLHEQASLLAGEIQHTIKQEVGVSMD-VHLVEPGSLPRSE-GKARRV 418 (422)
T ss_pred EEEEEecCcccccchHHHHHHHHHHHHHHHhccCcEEE-EEEECCCCccCCC-CCceEE
Confidence 8887764321 1133467899999999887642 2333457999988 998763
|
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. |
| >KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=348.16 Aligned_cols=504 Identities=18% Similarity=0.211 Sum_probs=341.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcC--CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAN--DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
+.+..+.+.+. ..|+..+..+-.. ..+.-.++||++.+..++.+|+.|...|...|+.|+++|..+.++++..++++
T Consensus 37 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~~~~~~~~~v~i~~~~~~d~~v~v~~~~ 115 (1032)
T KOG1178|consen 37 TLEDSFRRELA-EAPENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVSLGSLRGTTVAIYMLPSVDLVVSVFAVL 115 (1032)
T ss_pred chhhHHHHHHh-hcccCCCceEeecccccccccchhhhhhhcccchhHHHhhhcccccCceEEEeccCcCCeeeeeeehh
Confidence 35556666666 6777666554322 22446789999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEeCCCCCC----HHHHHH---HHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCC
Q 004034 279 RIGAVHSVVFAGFS----SDSLAQ---RIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQS 351 (778)
Q Consensus 279 ~~Gav~vpl~p~~~----~~~l~~---~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~ 351 (778)
++|+.+++++|.++ ++++.. .+......++. ..++++....... +... +.
T Consensus 116 ~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~-------------~l~i~~~~~~~~~---~~~s-v~------ 172 (1032)
T KOG1178|consen 116 AAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVR-------------RLNIIDILLNSLF---PKLS-VE------ 172 (1032)
T ss_pred hcceEEEEecCCCcccccchHHHhhhhhheeccceehh-------------hhhhHHHHhhccc---cccc-hh------
Confidence 99999999999999 332221 11111111110 1111111111110 0000 00
Q ss_pred ccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcE
Q 004034 352 AMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDV 431 (778)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~ 431 (778)
.. .-.+. .+............-+++.+++.||||+||.||||.-+|.. +.+...|+...|....+++
T Consensus 173 ----------~~-~~~f~-~~~~~~~~r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~s-l~~~fdw~~~~f~~t~s~~ 239 (1032)
T KOG1178|consen 173 ----------TI-ADSFQ-MVLHNEDTREIRVGGNDSTALLSFTSGSTGVPKGVAGTHFS-LANAFDWMFTTFPPTGSDR 239 (1032)
T ss_pred ----------hc-cchhh-hhhccCCCcceeeecccccceEeecccccccccccchhHHH-HHhhhhhccccCCcCccch
Confidence 00 00000 11111222223345577899999999999999999999999 5666667777788888887
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc----cc---
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY----VT--- 504 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~----~~--- 504 (778)
+-.....+++.. +....++++..+..++++.+.....+..+.+.+++++++.++.+|++.+.++...... ..
T Consensus 240 ~~~~~~~~~~d~-i~~~~~~~L~~~~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~ 318 (1032)
T KOG1178|consen 240 FTFKTSVYFDDT-IQKFIGALLFNGNNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFS 318 (1032)
T ss_pred hhhhheeecccc-hHHHHhhHhhcCceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhh
Confidence 644445544443 4555555555555444443333324789999999999999999999988887664421 00
Q ss_pred ----cCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCC------------CCCCCCc
Q 004034 505 ----RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW------------PQKPGSA 568 (778)
Q Consensus 505 ----~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~------------~~~~~~~ 568 (778)
....+.|+...++||+....++..+...+.. .-...-|+.++..+.......... +.....+
T Consensus 319 ~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~--~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~ 396 (1032)
T KOG1178|consen 319 LSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAE--IFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSII 396 (1032)
T ss_pred cccccccchhheeeeecCCccchhhhhhhhhcccc--eeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhcc
Confidence 1123479999999999999999866665432 223344888877654432111000 0000011
Q ss_pred CcCcCCceEEEECCCCceeCCCeeeEEEEecCC--CcccccccCChhhhhhhccC---CCCCeEEcCcEEEEecCCeEEE
Q 004034 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSW--PGAFRTLYGDHERYETTYFK---PFPGYYFTGDGCSRDKDGYHWL 643 (778)
Q Consensus 569 G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~--p~v~~gY~~~~~~~~~~~~~---~~~G~yrTGDl~~~~~dG~l~~ 643 (778)
|.+ +...+....+.+.+.++.+.....+-. ..+..| +..++++...+.. ....+|||||.++..++|.+.|
T Consensus 397 ~~~---~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~ 472 (1032)
T KOG1178|consen 397 GSL---TVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEI 472 (1032)
T ss_pred CCC---cceeeeeccCcccCCcccceeecccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEE
Confidence 211 233344444555554443333322200 223334 3555655554432 1234999999999999999999
Q ss_pred EeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCcc
Q 004034 644 TGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA 723 (778)
Q Consensus 644 ~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~ 723 (778)
.||.|+|||+||+||+++||++++..||.|.++.+.++.+..-++.+++||+....... .+..+|++++++.|++||+
T Consensus 473 ~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~--~~~~~i~~~l~~~La~y~v 550 (1032)
T KOG1178|consen 473 SGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQTLLAFVVERGGSKS--VLIRDIRNYLKKELASYML 550 (1032)
T ss_pred EEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCceEEEEEeccCCCCc--hhHHHHHHhhcccccceec
Confidence 99999999999999999999999999999999999999998889999999999876543 3478999999999999999
Q ss_pred ccEEEECCCCCCCCCCcccHHHHHHHH
Q 004034 724 PDKIHWAPGLPKTRSGKIMRRILRKIA 750 (778)
Q Consensus 724 P~~i~~v~~lP~T~sGKi~R~~L~~~~ 750 (778)
|..++.++++|+|++||||+++|.+..
T Consensus 551 Ps~~V~l~~vPl~~~GKvDkkaL~~~~ 577 (1032)
T KOG1178|consen 551 PSLVVPLAKVPLNPNGKVDKKALLEYN 577 (1032)
T ss_pred ceEEEEhhhCCcCCCCCcChhhhhhhh
Confidence 999999999999999999999999943
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=277.54 Aligned_cols=329 Identities=16% Similarity=0.115 Sum_probs=218.5
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH--HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK--YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
++.++++.|.|||||||+||+|.++|.++......... ...++.++|+++...++++..+.....++++..|++++..
T Consensus 83 ~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~ 162 (445)
T TIGR03335 83 ADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE 162 (445)
T ss_pred CCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence 45678999999999999999999999986544322221 2348899999999999888776444456677889887543
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
. .....+++|+++++|.+.++|+.+..|.+............+||.+++|||+++++..+++.+.+| ++++
T Consensus 163 ~------~~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g---~~v~ 233 (445)
T TIGR03335 163 G------KCTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWG---CEVY 233 (445)
T ss_pred C------chhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhC---CcEE
Confidence 2 224568999999999999999988777654321111112468999999999999999999998887 7899
Q ss_pred cccccccccceecccCCCCCCCCCCCcCcCc--CCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPF--FGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 542 ~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~--~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
+.||+||++.... +.. ..|..+ +.+.++|+|++ +.++++|+.|||+++.- .+...+....
T Consensus 234 ~~YG~TE~~~~~~--c~~-------~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L--------~~~~~r~~~P 296 (445)
T TIGR03335 234 NTYGSTEGTMCGE--CQA-------VAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTL--------LKPGERCGSL 296 (445)
T ss_pred ecCChhhhhheEE--ecC-------CCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEec--------CCCCccCCce
Confidence 9999999863221 111 123333 45788999986 46689999999999981 1100001111
Q ss_pred ccCCCCCeEEcCcEEEEec-C----C----eEEEEeecCCEEEeCceeeCHHHHHHHHhcC---Cccce-EEEEEEecCC
Q 004034 619 YFKPFPGYYFTGDGCSRDK-D----G----YHWLTGRVDDVINVSGHRIGTAEVESALVSH---PQCAE-AAVVGVEHEV 685 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~-d----G----~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~---p~V~e-a~Vv~~~~~~ 685 (778)
.+ -|+|||++++.. + | .+...||.||+++++|.+|+|.+||++|.++ +++.. ..++...+..
T Consensus 297 li-----RYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (445)
T TIGR03335 297 LI-----NYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEE 371 (445)
T ss_pred EE-----EeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCC
Confidence 11 499999999732 2 2 2555799999999999999999999999995 55542 3333222222
Q ss_pred CCeEEEEEEEEcCCCC-CCHHHHHHHHHH----HHh---hcCCCccccEEEECC--CCCCCC-CCcccH
Q 004034 686 KGQGIYAFVTLVEGVP-YSEELRKSLVLA----VRK---QIGAFAAPDKIHWAP--GLPKTR-SGKIMR 743 (778)
Q Consensus 686 ~~~~lva~Vv~~~~~~-~~~~l~~~l~~~----l~~---~Lp~~~~P~~i~~v~--~lP~T~-sGKi~R 743 (778)
....+..-|...+... ..+++.+++.+. +++ .+....+...+.+++ .||+++ .||..|
T Consensus 372 ~~~~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~r 440 (445)
T TIGR03335 372 GEITLRVSLECEDKDNCSIHDIQENFTGTFLKYKPELIGSYDEGIFQILVNFTGPGELELHKIKGRPKR 440 (445)
T ss_pred CCceEEEEEEecCcccchHHHHHHHHHHHHhhhhhhhhhhhhcceEEEEEEEeCCCCccccccCCCcee
Confidence 2224555555544322 113334444444 211 111122233344444 799984 688765
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-27 Score=268.99 Aligned_cols=520 Identities=15% Similarity=0.141 Sum_probs=356.1
Q ss_pred cHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 200 n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
-++.++|+-+++ ++||.+|+..-+.++.+..++||++|..+|.++|.+|++. -+++||.|+++.|+++|++++++||+
T Consensus 770 ~~ile~Lq~R~a-~tp~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~~Cl 848 (1363)
T KOG3628|consen 770 LTILEILQWRAA-KTPDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIYACL 848 (1363)
T ss_pred HHHHHHHHHHhh-cCCCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHHHHH
Confidence 367788888888 9999999999888778889999999999999999999976 47999999999999999999999999
Q ss_pred HhCCEEEeCCCCCC------HHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCc
Q 004034 279 RIGAVHSVVFAGFS------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSA 352 (778)
Q Consensus 279 ~~Gav~vpl~p~~~------~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~ 352 (778)
.+|.+++|+.|-.. ...+..+++..+++.|+++.......+.-.....++. ..+..++++++...
T Consensus 849 y~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~---------s~~p~i~~~~~~~~ 919 (1363)
T KOG3628|consen 849 YLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQ---------SAIPLILVLPKLPE 919 (1363)
T ss_pred hcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhh---------hcchhhhcccccch
Confidence 99999999988533 3468899999999999998765322211111111111 11222232222110
Q ss_pred cccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEE
Q 004034 353 MTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY 432 (778)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~ 432 (778)
.+.. ......+.....++....++.+||+-|.--++|.--|+.++|.+ +.++....+....+.+..-+
T Consensus 920 ------t~~k-----~~~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHss-lla~Ck~iKe~~~l~~~rpl 987 (1363)
T KOG3628|consen 920 ------TIRK-----RKKNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSS-LLAFCKIIKETCQLYKSRPL 987 (1363)
T ss_pred ------hhhh-----hhhhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHH-HHHHHHHHHHHHccccCCce
Confidence 0000 00011111222233445678899999999999999999999999 66778888888888888877
Q ss_pred EEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc-----cccCC
Q 004034 433 WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-----VTRYS 507 (778)
Q Consensus 433 l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~-----~~~~~ 507 (778)
+...+..-..|+....+...+.|.+.++..+.....+|..|++.|++++|.-++.+-..++.+.+..... ....+
T Consensus 988 ~~~~~~~sGlgf~~wcLlgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn 1067 (1363)
T KOG3628|consen 988 LGCSSPYSGLGFNHWCLLGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNN 1067 (1363)
T ss_pred EEEecCccchhHHHHHHHHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcc
Confidence 7777777777777777778889999888877666678999999999999999999988888887653211 11122
Q ss_pred CCceeEEEEecCCCCHHHHHHHHHHh---CCCCcceecccccccccceecccCCCCCC--------------CC------
Q 004034 508 RKSLRVLGSVGEPINPSAWRWFFNVV---GDSRCPISDTWWQTETGGFMITPLPGAWP--------------QK------ 564 (778)
Q Consensus 508 l~sLr~v~~gGe~l~~~~~~~~~~~~---g~~~~~i~~~YG~TE~g~~~~~~~~~~~~--------------~~------ 564 (778)
+++ ..++..-|.....+..-|.+.+ |...-.+...|+.--.-.++.....+..| .+
T Consensus 1068 ~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~a 1146 (1363)
T KOG3628|consen 1068 TSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGA 1146 (1363)
T ss_pred ccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCC
Confidence 222 2222233344444444444433 32212233344433222111111111000 00
Q ss_pred -----CCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC------C--CCCeEEcC
Q 004034 565 -----PGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK------P--FPGYYFTG 630 (778)
Q Consensus 565 -----~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~------~--~~G~yrTG 630 (778)
.-..|.-.+++++.|+++ +-.+|..|+.||||+.+ +.-+.+|++-.+.+...-|. + ..+|-|||
T Consensus 1147 p~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~S--~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG 1224 (1363)
T KOG3628|consen 1147 PHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVNS--AHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTG 1224 (1363)
T ss_pred CCccccccCCcccccceeEEeCCccccccccCCcceEEecc--ccccccccccCchhhhhhhhhhccccccccccceeee
Confidence 113477788999999997 55679999999999999 77777777643223322221 1 23499999
Q ss_pred cEEEEec------CC----eEEEEeecCCEEEeCceeeCHHHHHHHHh-cCCccceEEEEEEecCCCCeEEEEEEEEcCC
Q 004034 631 DGCSRDK------DG----YHWLTGRVDDVINVSGHRIGTAEVESALV-SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEG 699 (778)
Q Consensus 631 Dl~~~~~------dG----~l~~~GR~dd~Iki~G~rI~~~eIE~~L~-~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~ 699 (778)
|+|+... .| -||++|-.++.+.++|-|..|.+||..+. .||.|.+|+|+- ++..+|..+....
T Consensus 1225 ~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~-----~~glvVvviE~~g- 1298 (1363)
T KOG3628|consen 1225 DLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSDIETTVERVHPSIGGCAVFQ-----ATGLVVVVIECHG- 1298 (1363)
T ss_pred eeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcchHHHHHHHhcccccceeeEe-----eCCeEEEEEEecC-
Confidence 9999742 22 48999999999999999999999999885 699999999983 4445777777665
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCccccEEEECC--CCCCCCCCcccHHHHHHHHhc
Q 004034 700 VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAP--GLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 700 ~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~--~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.+.-.++..-|...+-+.. +.+-..+.+|+ .+|+++.|..+|..+++.+..
T Consensus 1299 q~~~~~LvPlIv~~vL~eH--~iI~dvV~fV~~G~~p~~~~gEK~R~~I~~~w~~ 1351 (1363)
T KOG3628|consen 1299 QQELADLVPLIVNVVLEEH--YIILDVVAFVDKGVFPRNSRGEKQRAHILDSWLA 1351 (1363)
T ss_pred chhHhhhhHHHHHHHHhhc--ceEEEEEEEecCCccccCCchhhHHHHHHHHHHh
Confidence 2222233344444443332 44555677776 599999999999999887654
|
|
| >TIGR03089 conserved hypothetical protein TIGR03089 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=227.94 Aligned_cols=223 Identities=17% Similarity=0.129 Sum_probs=163.1
Q ss_pred HHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEE
Q 004034 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (778)
Q Consensus 207 ~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~v 285 (778)
+.+++ ++|+++|+++.++..++.+++||+||.++++++|+.|++ +|+++||+|+|+++|++++++++|||+++|++++
T Consensus 3 ~~~~~-~~p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G~v~v 81 (227)
T TIGR03089 3 SPLLA-ADPASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTGVEVV 81 (227)
T ss_pred hhhhh-hCCCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 34555 799999999753321135689999999999999999998 7999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcc
Q 004034 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (778)
Q Consensus 286 pl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (778)
|++ +++++++|++++...... . . +.++.+............. ....
T Consensus 82 p~n-------------~s~a~~~v~~~~~~~~~~--------------~----~--~~~~~~~~~~~~~~~~~~~-~~~~ 127 (227)
T TIGR03089 82 LAG-------------DPDADVVVTGPDRLAAAA--------------G----S--GEVVALSLDPLGRRVAGEL-PPGV 127 (227)
T ss_pred eCC-------------CCCCCEEEeCcchhhhcc--------------c----C--CceEEEeccccccCCCCCC-CCcc
Confidence 995 789999999876532100 0 1 1223221100000000000 1112
Q ss_pred cchhhccCCCCCCCCcc-ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhh
Q 004034 366 IWWQDVVPKYPTKCEVE-WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGH 444 (778)
Q Consensus 366 ~~~~~~l~~~~~~~~~~-~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~ 444 (778)
..|.+.+........+. ...++|++.|+||||+ +|++++.+. ...++.++|+++ .+|++|..|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~-----~~~~l~~~D~~l-~~Pl~H~~gl 192 (227)
T TIGR03089 128 IDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA-----RAAGLPPGDRVL-VLAWTDLEDF 192 (227)
T ss_pred cchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH-----hhcCCCCCCeEE-ecCCCchHHH
Confidence 34555444322222222 4567999999999985 666655443 457889999999 9999999998
Q ss_pred hHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCcc
Q 004034 445 SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVT 483 (778)
Q Consensus 445 ~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT 483 (778)
...++.+|..|+++|+++ .++++.+++.|+++|||
T Consensus 193 ~~~~~~~l~~G~t~v~~~----rFd~~~~l~~i~~~~vT 227 (227)
T TIGR03089 193 LATLLAPLAAGGSLVLVT----HPDPARLDQIAETERVT 227 (227)
T ss_pred HHHHHHHhccCceEEEec----CCCHHHHHHHHHhhcCC
Confidence 788999999999999984 36999999999999997
|
This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501. |
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=224.03 Aligned_cols=327 Identities=21% Similarity=0.211 Sum_probs=232.6
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEE
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~ 461 (778)
++-++...|--||||||+|+-+..++..+..+... ..-...+...+|++......+..+|....-+++--.|++++-.
T Consensus 87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~ 166 (438)
T COG1541 87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI 166 (438)
T ss_pred ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence 34466677889999999999999998874433222 2223457788999888777776666544445555567776655
Q ss_pred cCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee
Q 004034 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (778)
Q Consensus 462 ~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~ 541 (778)
.+ -+.++.+++++.+++|++.++|+.+..|.+..........-.+||.+++|+|+++++..+.+.+.+| +.++
T Consensus 167 ~~----g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g---~~~~ 239 (438)
T COG1541 167 SG----GNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFG---CKAF 239 (438)
T ss_pred CC----ccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhC---Ccee
Confidence 43 2668899999999999999999999999887543211234468999999999999999999999998 7889
Q ss_pred cccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhhcc
Q 004034 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620 (778)
Q Consensus 542 ~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~ 620 (778)
+.||.||..+.....+.. .. -.-.+-+...+.|+|+ +|++++.|+.|||+++. + ++ .....+
T Consensus 240 diYGltE~~g~g~~eC~~----~~-glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~----L-----~~---~~~PlI 302 (438)
T COG1541 240 DIYGLTEGFGPGAGECTE----RN-GLHIWEDHFIFEIVDPETGEQLPDGERGELVITT----L-----TK---EGMPLI 302 (438)
T ss_pred eccccccccCCccccccc----cc-CCCcchhhceeeeecCCcCccCCCCCeeEEEEEe----c-----cc---cCcceE
Confidence 999999997653111111 11 1222445677889996 89999999999999988 1 11 111111
Q ss_pred CCCCCeEEcCcEEEEecC----Ce-----EEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc-eEEEEEEecCCCCeEE
Q 004034 621 KPFPGYYFTGDGCSRDKD----GY-----HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA-EAAVVGVEHEVKGQGI 690 (778)
Q Consensus 621 ~~~~G~yrTGDl~~~~~d----G~-----l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~-ea~Vv~~~~~~~~~~l 690 (778)
-|+|||+.++.++ |. ..+.||.||+++++|.+|.|..||++|.+.+.+. +-.++... +.....+
T Consensus 303 -----RYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L 376 (438)
T COG1541 303 -----RYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDEL 376 (438)
T ss_pred -----EEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceE
Confidence 4999999999874 32 5699999999999999999999999999999999 55555444 4445678
Q ss_pred EEEEEEcCCCCCCHHH---HHHHHHHHHhhcCCCccccEEEECCCCCCCCCCccc
Q 004034 691 YAFVTLVEGVPYSEEL---RKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIM 742 (778)
Q Consensus 691 va~Vv~~~~~~~~~~l---~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~ 742 (778)
.+-|+..++....... .++|...++..++. .+-..++.+..+|+|.. |..
T Consensus 377 ~V~vE~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~v~~g~l~r~~~-K~k 429 (438)
T COG1541 377 TVRVELENEAEELEDERRLAKKLIKNIKSELGV-RVEVELVEPGELPRTEG-KAK 429 (438)
T ss_pred EEEEEecCcccchHHHHHHHHHHHHHHHhhcCC-ceEEEEEeccceecccC-cee
Confidence 8888877542222222 24566666665542 22223555568999975 643
|
|
| >PRK09188 serine/threonine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=225.65 Aligned_cols=140 Identities=27% Similarity=0.345 Sum_probs=123.9
Q ss_pred CCCeEEcCcEEEE-ecCCeEEEEeecCCEEEeCc---eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 623 FPGYYFTGDGCSR-DKDGYHWLTGRVDDVINVSG---HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 623 ~~G~yrTGDl~~~-~~dG~l~~~GR~dd~Iki~G---~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
.+|||+|||+|++ |+||+|+|+||.| +| ++|+|. ||++|.+||+|.||+|++++++..|+.++|||++..
T Consensus 207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~ 280 (365)
T PRK09188 207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL 280 (365)
T ss_pred cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence 3789999999998 6999999999998 88 799999 999999999999999999999999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCC-CCCCChhhHHHHHh
Q 004034 699 GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDT-STLADPGVVDQLIA 774 (778)
Q Consensus 699 ~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 774 (778)
. .+ .++|+++++++|+. ++|+.|+++++||+|++|||+|+.|+++..++.+.++|+ +++++...++.+.+
T Consensus 281 ~--~~---~~el~~~l~~~L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 351 (365)
T PRK09188 281 P--AD---EKSLRARLAGAKPP-KPPEHIQPVAALPRDADGTVRDDILRLIAMNQIDELDDLLREPEIRGLVEAIAA 351 (365)
T ss_pred C--CC---HHHHHHHHHhhchh-cCCcEEEEECCCCCCCCCCccHHHHHHHhhcccccccccccChhHHHHHHHHHH
Confidence 2 22 57899999999999 999999999999999999999999999998887777777 55555555555544
|
|
| >KOG3628 consensus Predicted AMP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-16 Score=179.46 Aligned_cols=492 Identities=16% Similarity=0.156 Sum_probs=314.3
Q ss_pred cCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHH-HHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCCC
Q 004034 213 GLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLAN-YLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFA 289 (778)
Q Consensus 213 ~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~-~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~p 289 (778)
+.+..+|.++-+..+. ...+||..+..++.+.|+ .|.+.|++++|+|.++...+ .|+++..++|...|.+.+|+++
T Consensus 106 hs~~~ta~i~id~kgk-~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~gc~l~g~~~vp~~e 184 (1363)
T KOG3628|consen 106 HSATSTAHICIDKKGK-ATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLFGCFLLGIVAVPLSE 184 (1363)
T ss_pred CCCCCceEEEEcCCCc-eeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhccccccceeeccchh
Confidence 7888999999877744 889999999999999999 77788999999999999665 7999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchh
Q 004034 290 GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQ 369 (778)
Q Consensus 290 ~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 369 (778)
..+.+++..+++....+++++.....+.............+++.. ... ++.
T Consensus 185 ~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~~~~s~~k~v~~w--------------~t~---------------~~k 235 (1363)
T KOG3628|consen 185 LSSSEELKDIVNPTPERVALTTEAGERAFINDNSPVSLAKAVAWW--------------KTN---------------DFK 235 (1363)
T ss_pred hhhhhhhhcccCCCccceEeehhhhHHHhhhccCcccHHHHHHhh--------------hcc---------------ccc
Confidence 999999999999999999999876543111100000011111110 000 000
Q ss_pred hccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHH--------------HHHHH-----HHhhCCCCCc
Q 004034 370 DVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH--------------TATTF-----KYAFDYKPSD 430 (778)
Q Consensus 370 ~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~--------------~~~~~-----~~~~~~~~~d 430 (778)
-.........|...+ . ..||-||++++|.--|++.+|+ ++.. ...++ ...+.....+
T Consensus 236 ~~~~~~k~~~P~~~~--~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~ 311 (1363)
T KOG3628|consen 236 GNYTKDKIKKPRMQL--P-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSED 311 (1363)
T ss_pred ceeehhhccCCceee--e-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCccc
Confidence 000000111122222 2 7899999999999999999998 3322 11112 2234455567
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcc--------
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-------- 502 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~-------- 502 (778)
.++......--.|++..++.+|++|.|.+.++.. ....|..+.+++.+++.+++.+--..+......-.+.
T Consensus 312 ~~l~~~~~s~~lGlilGV~~alfsg~c~i~~p~~-~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~ 390 (1363)
T KOG3628|consen 312 VLLTNLDPSQQLGLILGVLVALFSGYCTIGCPKE-VLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFK 390 (1363)
T ss_pred ceeeccCcccccchhhhhhhhhhcCceeecCchh-hcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchh
Confidence 7777777666677777889999999999998764 3447788999999999999877655444443221110
Q ss_pred -cccCCCCceeEEEEecCCCCHHHHHHHHHH----hCCCCcceeccccc-----------------ccccceecccCCCC
Q 004034 503 -VTRYSRKSLRVLGSVGEPINPSAWRWFFNV----VGDSRCPISDTWWQ-----------------TETGGFMITPLPGA 560 (778)
Q Consensus 503 -~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~----~g~~~~~i~~~YG~-----------------TE~g~~~~~~~~~~ 560 (778)
-+..++++||.+++..+.+..+..+..... +|... .-..|-+ +|++..... .++.
T Consensus 391 k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~--~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r-~p~~ 467 (1363)
T KOG3628|consen 391 KYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETN--VKVVDFPILCLLWHGGIPISFKDWMEIGTVSIR-RPEQ 467 (1363)
T ss_pred hccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcC--cceeechhhhhhhcCceEEEeccchhhhccccc-Cccc
Confidence 112468899999999999988765433222 22111 1111211 333332221 1110
Q ss_pred ----C-------------------------CCCCCCcCcCcCC-ceEEEECC-CCceeCCCeeeEEEEecCCCccccccc
Q 004034 561 ----W-------------------------PQKPGSATFPFFG-VQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLY 609 (778)
Q Consensus 561 ----~-------------------------~~~~~~~G~p~~g-~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~ 609 (778)
. ...+...|+-.++ +.+.|+++ ..+.|..++.|||||.+ +.+..+||
T Consensus 468 ~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS--~~~~~~~~ 545 (1363)
T KOG3628|consen 468 MADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSS--NSLGKLFY 545 (1363)
T ss_pred ccccCccceeeeccccccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEec--CCccccee
Confidence 0 0011234554444 45556665 56779999999999999 89999999
Q ss_pred CChhhhhhhccC-------CCCC---eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHH----------HHHHhc
Q 004034 610 GDHERYETTYFK-------PFPG---YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV----------ESALVS 669 (778)
Q Consensus 610 ~~~~~~~~~~~~-------~~~G---~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eI----------E~~L~~ 669 (778)
.-+..+...|-. ..++ +.|||=+|++.+++-+.+.++.|....++|.+....+| +.+.+.
T Consensus 546 al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~~gki~vl~~k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~ 625 (1363)
T KOG3628|consen 546 ALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVHNGKIYVLGLKEDGLLQVSGWRHNADDIVATHYAVELIKTVMRG 625 (1363)
T ss_pred eccccccceEEeeeccccCCCCccchhhhhcceeeeeCCeEEEEEechhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhc
Confidence 866444444321 1122 88999999998666555555555555678888876664 334445
Q ss_pred CCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHH--HHHHHHHHHh--hcCCCccccEEEECCCCCCCCCCcccHHH
Q 004034 670 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEEL--RKSLVLAVRK--QIGAFAAPDKIHWAPGLPKTRSGKIMRRI 745 (778)
Q Consensus 670 ~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l--~~~l~~~l~~--~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~ 745 (778)
.+.|-++.++- .++++..++-.+.....+.+ ..++.+.+.. ++..|-+ .++..+.||||+-|-|.-..
T Consensus 626 v~~VF~~saf~------~E~~~Vv~~esP~a~e~~~~q~~~~v~q~l~~iHqv~vyCi--livP~~tLPrt~~~Gi~~~~ 697 (1363)
T KOG3628|consen 626 VIAVFDVSAFE------DEHIVVVVLESPDATEENSFQWMSRVFQALDSIHQVGVYCI--LIVPANTLPRTPLGGIHNNE 697 (1363)
T ss_pred cceEEEEeeee------cceEEEEEEeCcchhhhhhhhHHHHHHHHHHHHhcccceEE--EEeccccCCCccccccccHH
Confidence 56777777763 45566666555443211111 2233332322 2332322 25555689999987799999
Q ss_pred HHHHHhc
Q 004034 746 LRKIASR 752 (778)
Q Consensus 746 L~~~~~~ 752 (778)
+++.|.+
T Consensus 698 ~k~~F~~ 704 (1363)
T KOG3628|consen 698 CKQAFLE 704 (1363)
T ss_pred HHHHHHc
Confidence 9998864
|
|
| >TIGR02304 aden_form_hyp probable adenylate-forming enzyme | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=164.54 Aligned_cols=257 Identities=15% Similarity=0.111 Sum_probs=163.8
Q ss_pred cEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh--hCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcE-EEEEcCCC
Q 004034 389 PLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCGWITGHSYVTYGPMLNGAS-VVVFEGAP 465 (778)
Q Consensus 389 ~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~t-lvl~~~~~ 465 (778)
-..+..||||||+|-.++.+......+....+... .++..++++..+. |..+ .++..+.+... +-.++-
T Consensus 101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~---~~~~---~ly~~~~~~~~~~~~~~l-- 172 (430)
T TIGR02304 101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFL---RADN---NLYQSVNNRWISLDFFDL-- 172 (430)
T ss_pred cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEE---ccCh---hHHHHHHhccceeeecCC--
Confidence 34577899999999999999887543332222221 2455566655542 1111 12233333221 233322
Q ss_pred CCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccc
Q 004034 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (778)
Q Consensus 466 ~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 545 (778)
..+.+.+++.|++++++++.+.|+.+..|.+...+ ...+ ..++.++++||.++++..+.+.+.|| +++++.||
T Consensus 173 -~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~--~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg---~~V~~~YG 245 (430)
T TIGR02304 173 -LAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVME--GELT-IKPKKVISVAEVLEPQDRELIRNVFK---NTVHQIYQ 245 (430)
T ss_pred -CcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHh--cCCC-CCceEEEEccCCCCHHHHHHHHHHhC---CCeeEccC
Confidence 14678999999999999999999999999886432 1112 47999999999999999999999998 78999999
Q ss_pred cccccceecccCCCCCCCCCCCcCcCcCCceEE--EECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCC
Q 004034 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPV--IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPF 623 (778)
Q Consensus 546 ~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~--Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~ 623 (778)
+|| |.+.. .+.. +..-.--..+-++ ++|+++++ +.+|++ +.|.. ..++
T Consensus 246 ~tE-g~la~-eC~~------g~lHl~ed~~~vE~~ivD~~~~~-------~~ViT~--------L~n~~----~PlI--- 295 (430)
T TIGR02304 246 ATE-GFLAS-TCRC------GTLHLNEDLVHIEKQYLDEHKRF-------VPIITD--------FTRTT----QPIV--- 295 (430)
T ss_pred Cch-hheEE-ecCC------CCEEEccccEEEEeeEECCCCce-------EEEEec--------CCCcc----ceEE---
Confidence 999 54322 1111 1110011122333 77876643 346666 12211 1111
Q ss_pred CCeEEcCcEEEEecC----Ce----E-EEEeecCCEEEe---Cce--eeCHHHHHHHHh-cCCccceEEEEEEecCCCCe
Q 004034 624 PGYYFTGDGCSRDKD----GY----H-WLTGRVDDVINV---SGH--RIGTAEVESALV-SHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 624 ~G~yrTGDl~~~~~d----G~----l-~~~GR~dd~Iki---~G~--rI~~~eIE~~L~-~~p~V~ea~Vv~~~~~~~~~ 688 (778)
-|+|||++++.++ |. | .+.||.||++++ +|. .|.|..|+.+|. ..++|.+..++-. ...
T Consensus 296 --RYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~----~~~ 369 (430)
T TIGR02304 296 --RYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQT----GSA 369 (430)
T ss_pred --eeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEc----cCC
Confidence 3999999998654 32 3 488999999996 254 459999998855 5789999877732 123
Q ss_pred EEEEEEEE
Q 004034 689 GIYAFVTL 696 (778)
Q Consensus 689 ~lva~Vv~ 696 (778)
.+...++.
T Consensus 370 ~l~v~~~~ 377 (430)
T TIGR02304 370 QLELIADC 377 (430)
T ss_pred eEEEEEEe
Confidence 45555554
|
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase. |
| >PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-13 Score=111.43 Aligned_cols=70 Identities=40% Similarity=0.550 Sum_probs=62.4
Q ss_pred HHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccc--cEEEECCC-CCCCCC
Q 004034 662 EVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAP--DKIHWAPG-LPKTRS 738 (778)
Q Consensus 662 eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P--~~i~~v~~-lP~T~s 738 (778)
|||++|.+||+|.||+|++++++..|+.++|||++ ..++|+++++++||+|++| ..++.+++ ||+|+|
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~---------~~~~i~~~~~~~l~~~~~P~~~~~v~~~~~lP~t~~ 71 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL---------DEEEIRDHLRDKLPPYMVPRRIRFVRLDEELPRTPS 71 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE---------HHHHHHHHHHHHS-GGGS-SEEEEEEESSSEEBETT
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe---------eecccccchhhhCCCcceeeEEEEccccCcCCCCCC
Confidence 89999999999999999999999889999999998 1489999999999999999 56666677 999999
Q ss_pred Cc
Q 004034 739 GK 740 (778)
Q Consensus 739 GK 740 (778)
||
T Consensus 72 GK 73 (73)
T PF13193_consen 72 GK 73 (73)
T ss_dssp SS
T ss_pred CC
Confidence 98
|
... |
| >PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=99.79 Aligned_cols=242 Identities=16% Similarity=0.139 Sum_probs=136.1
Q ss_pred cCCCCcEEEEeCCCCCCCCceEEEccchHHHH---HHHHHHHhhCCCC-CcEEEEeCCcchhhhhh----HHHHHHHhcC
Q 004034 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH---TATTFKYAFDYKP-SDVYWCTADCGWITGHS----YVTYGPMLNG 455 (778)
Q Consensus 384 ~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~---~~~~~~~~~~~~~-~d~~l~~~~~~~~~g~~----~~i~~~L~~G 455 (778)
.+++++..++-||||||.|--+.+.+...... ....+....+... .-.++...|-......+ ......++.+
T Consensus 86 ~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~ 165 (365)
T PF04443_consen 86 VPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFG 165 (365)
T ss_pred cChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccC
Confidence 34567778899999999986666655442211 1222222222222 12333333322211111 1222334445
Q ss_pred cEEEEEcCCCCCCChhHHHHHHH----HhCccEEEecHHHHHHHHhcCCcccccCCCC-ceeEEEEec------CCCCH-
Q 004034 456 ASVVVFEGAPTYPDSGRSWDIVD----KYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK-SLRVLGSVG------EPINP- 523 (778)
Q Consensus 456 ~tlvl~~~~~~~~~~~~~~~~i~----~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~-sLr~v~~gG------e~l~~- 523 (778)
.. .+.++. ..+.+.+++.+. +.+...+++.|.++..++....+......++ ..+.+-.|| |.++.
T Consensus 166 ~~-~~l~~~--~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ 242 (365)
T PF04443_consen 166 SR-FALDND--ELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSRE 242 (365)
T ss_pred ce-eeecCC--ccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHH
Confidence 55 333322 246676666664 3456778888887666654433222233444 345555555 45765
Q ss_pred HHHHHHHHHhCC-CCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCC
Q 004034 524 SAWRWFFNVVGD-SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSW 601 (778)
Q Consensus 524 ~~~~~~~~~~g~-~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~ 601 (778)
+..+.+.+.+|. ..-.+++.||+||.....+..-.+ -.+.|-. +.|.|+ +.++++.|++|-|.+-.+.
T Consensus 243 ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~~~~---------~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~ 312 (365)
T PF04443_consen 243 EFYARLQEVFGVIPIENIYDMYGMTELNSQAYECGHG---------HFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLA 312 (365)
T ss_pred HHHHHHHHHHCCCCHHHeeeeeeccccchhheeCCCC---------cccCCCe-EEEECCCCCcCCCCCCeeEEEEEccc
Confidence 455667777884 345799999999977543321111 1123333 667787 6789999999999987732
Q ss_pred CcccccccCChhhhhhhccCCCCCeEEcCcEEEEecC--------CeEEEEeecCCEEEeCcee
Q 004034 602 PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD--------GYHWLTGRVDDVINVSGHR 657 (778)
Q Consensus 602 p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~d--------G~l~~~GR~dd~Iki~G~r 657 (778)
+ . ..++..-|.|+|.+..+ .++.++||.+. -.+||-.
T Consensus 313 ~---~---------------s~p~~IlTeDlGvl~~~~~c~cr~g~~f~vlGR~~~-ae~RGCs 357 (365)
T PF04443_consen 313 N---T---------------SYPGFILTEDLGVLHGDDDCGCRKGKYFEVLGRADG-AEIRGCS 357 (365)
T ss_pred c---c---------------CCCcEEEEcceeeecCCCCCCCccCCEEEEEeCCCC-CccCCcH
Confidence 1 0 12455779999988654 27999999874 2344433
|
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence |
| >PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-06 Score=98.68 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=95.7
Q ss_pred CCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceE-EEE--CCC-
Q 004034 508 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP-VIV--DEK- 583 (778)
Q Consensus 508 l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~-~Iv--d~~- 583 (778)
++.|+.|.+.+..-...-...+++.+|. -..+...|++||.- +.+ +... . ...+..+++... +.+ ++.
T Consensus 266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~-~~~~~~~y~ASEg~-i~i-~~~~---~--~~~~~l~~~~~ffEFip~~~~~ 337 (528)
T PF03321_consen 266 WPNLKLVSCWGGGSMAPYAPKLREYFGG-VPIQSKGYGASEGF-IGI-PLDP---E--DPGYVLAPDSGFFEFIPVDEDE 337 (528)
T ss_dssp STT--EEEEE-SGGGGGGHHHHHHHHTT-S-EEE-EEEETTEE-EEE-ES-C---C--C--EEE-TTSSEEEEEE-STT-
T ss_pred CCCCcEEEEEcCCChHHHHHHHHHHcCC-CceeeccccccceE-EEE-ecCC---C--CCceEeecCCeEEEEEeccCCc
Confidence 6899988877766666777788888885 24467899999953 322 2210 0 112223333221 122 221
Q ss_pred ------C-----ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEec--CC--eEEEEee
Q 004034 584 ------G-----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDK--DG--YHWLTGR 646 (778)
Q Consensus 584 ------g-----~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~--dG--~l~~~GR 646 (778)
. .++..|+..||+|+.. .| -|+.||++++.. ++ .|.|+||
T Consensus 338 ~~~~~~~~~l~~~ele~G~~YelviTt~-----------------------~GLyRY~iGDvVrv~gf~~~~P~i~F~~R 394 (528)
T PF03321_consen 338 QNPSEQPKTLLLHELEVGEEYELVITTN-----------------------SGLYRYRIGDVVRVTGFYNQTPRIEFVGR 394 (528)
T ss_dssp ------SSSEEGGG--TT-EEEEEEEST-----------------------TS-SSEEECEEEEEEEEETTEEEEEEEEE
T ss_pred ccccCCCceecHHHhcCCCeEEEEEecc-----------------------cceeeeecCCEEEEeeccCCCcEEEEecc
Confidence 1 2366888999999872 23 399999999864 45 7999999
Q ss_pred cCCEEEeCceeeCHHHHHHHHhcC-----CccceEEEEEEecCCCCeEEEEEEEEcCC
Q 004034 647 VDDVINVSGHRIGTAEVESALVSH-----PQCAEAAVVGVEHEVKGQGIYAFVTLVEG 699 (778)
Q Consensus 647 ~dd~Iki~G~rI~~~eIE~~L~~~-----p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~ 699 (778)
.+.++.+.|+++.-.+|+++|.+. -.+.+.++...........-+.|+.+...
T Consensus 395 ~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~ 452 (528)
T PF03321_consen 395 RGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELEGE 452 (528)
T ss_dssp TTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEECS-
T ss_pred CCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeCCC
Confidence 999999999999999999999864 34556666544222344566777777654
|
The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A. |
| >PLN02249 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0079 Score=69.79 Aligned_cols=131 Identities=16% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCc---eeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcC-cC-CceEEEE--
Q 004034 508 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP-FF-GVQPVIV-- 580 (778)
Q Consensus 508 l~s---Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p-~~-g~~~~Iv-- 580 (778)
++. +..+..||-. .-...+...+|. -..+...|++||.- +.+ +..... .+...+.- ++ +.-.+.+
T Consensus 301 WPnl~~i~~~~~G~~~---~Y~~~l~~~~g~-~~~~~~~Y~ASEg~-~gi-~~~~~~--~p~~~~~~l~~~~~ffEFiP~ 372 (597)
T PLN02249 301 WPNTKYLDVIVTGAMA---QYIPMLEYYSGG-LPMASTIYASSESY-FGI-NLNPMC--KPSEVSYTIMPNMAYFEFLPH 372 (597)
T ss_pred CCCCCeEEEEecCChH---HHHHHHHHHcCC-CccccccccccceE-EEe-ecCCCC--CCCCcceEecCCcEEEEeeec
Confidence 456 5566666644 444555555553 24578999999953 222 211000 01111111 11 2222222
Q ss_pred CCCC------------ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEecC----CeEE
Q 004034 581 DEKG------------VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKD----GYHW 642 (778)
Q Consensus 581 d~~g------------~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~d----G~l~ 642 (778)
|+.+ ..|..|+.-||+|+. ..| -|+.||.+++..- -.|.
T Consensus 373 ~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT-----------------------~~GLyRY~iGDvVrvtgf~~~~P~i~ 429 (597)
T PLN02249 373 NHDGDGALDETSLVELADVEVGKEYELVITT-----------------------YAGLYRYRVGDILRVTGFHNSAPQFK 429 (597)
T ss_pred ccCCcccCCCCcEecHHHcCCCCeEEEEEEc-----------------------ccceeEeecCCEEEEeeccCCCcEEE
Confidence 2211 235678888999877 134 3889999998642 3699
Q ss_pred EEeecCCEEEeCceeeCHHHHHHHHhc
Q 004034 643 LTGRVDDVINVSGHRIGTAEVESALVS 669 (778)
Q Consensus 643 ~~GR~dd~Iki~G~rI~~~eIE~~L~~ 669 (778)
|+||.+.++.+.|.++.-.+++.+|.+
T Consensus 430 F~gR~~~~ls~~GEKl~e~~v~~Av~~ 456 (597)
T PLN02249 430 FIRRKNVLLSIESDKTDEADLQKAVEN 456 (597)
T ss_pred EEccCCcceecccccCCHHHHHHHHHH
Confidence 999999999999999999999998877
|
|
| >PLN02247 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0046 Score=71.19 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=84.4
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCC-cCcCcCCceEE-EE--C
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGS-ATFPFFGVQPV-IV--D 581 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~g~~~~~~~~~~~~~~~~~-~G~p~~g~~~~-Iv--d 581 (778)
-++.+++|.+.-..-...-...+....| +++++ ..|++||+-+ .+ +.... ..+.. ....+|+.... .+ |
T Consensus 291 LWP~lk~I~~~~tGsm~~Y~~~L~~y~g--glpl~s~~Y~sSE~~~-gi-nl~p~--~~p~~~sy~L~p~~~yFEFip~~ 364 (606)
T PLN02247 291 LWPRTKYIEVIVTGSMAQYIPTLEFYSG--GLPLVSTMYASSECYF-GI-NLKPL--SDPSDVSYTLLPNMAYFEFLPVD 364 (606)
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHHHcC--CCceecccccccceEE-Ee-ccCcC--CCccCCceeecCCcEEEEEeecC
Confidence 3577888877665555666666665555 46655 5899999542 22 22110 01111 12222332221 12 2
Q ss_pred CC----------------------------CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCc
Q 004034 582 EK----------------------------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGD 631 (778)
Q Consensus 582 ~~----------------------------g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGD 631 (778)
+. ...+..|+.-||+|+. +.| -||.||
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvTt-----------------------~~GLYRYrlGD 421 (606)
T PLN02247 365 KNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVTT-----------------------FTGLYRYRVGD 421 (606)
T ss_pred CCcccccccccccccccccccccccCceecHHHccCCCeEEEEEEe-----------------------cCceEEEecCC
Confidence 11 1135678888888876 134 488999
Q ss_pred EEEEe----cCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 632 GCSRD----KDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 632 l~~~~----~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
++++. .--.|.|++|.+.+..+.|.+..-.++-.++.+.
T Consensus 422 vv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a 464 (606)
T PLN02247 422 ILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA 464 (606)
T ss_pred EEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence 99974 3356999999999999999999999998888753
|
|
| >PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00062 Score=59.44 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=56.5
Q ss_pred ceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCC----CHHHHHHHHHHHHhhcCCCccccEEEEC
Q 004034 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWA 730 (778)
Q Consensus 655 G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~~P~~i~~v 730 (778)
|.+|+|..||++|.++|++.....+.+........+...|...++... .+++.++|.+.|++.|.- .| .+.++
T Consensus 1 GvnvfP~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv--~~-~V~lv 77 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGV--RP-EVELV 77 (96)
T ss_dssp TEEE-HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS---E-EEEEE
T ss_pred CcEECHHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCc--eE-EEEEE
Confidence 789999999999999999994444334444456778888888876532 256788899999998863 23 44444
Q ss_pred --CCCCCCCCCcccH
Q 004034 731 --PGLPKTRSGKIMR 743 (778)
Q Consensus 731 --~~lP~T~sGKi~R 743 (778)
..||++ .||..|
T Consensus 78 ~~gtLpr~-~~K~~R 91 (96)
T PF14535_consen 78 PPGTLPRS-EGKAKR 91 (96)
T ss_dssp -TT-S----SSSS-S
T ss_pred CCCCccCC-CCcceE
Confidence 579998 578654
|
|
| >PLN02620 indole-3-acetic acid-amido synthetase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.046 Score=63.01 Aligned_cols=135 Identities=11% Similarity=0.063 Sum_probs=83.4
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce-ecccccccccceecccCCCCCCCCCCCc-CcCcCCceEE-EE--C
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI-SDTWWQTETGGFMITPLPGAWPQKPGSA-TFPFFGVQPV-IV--D 581 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i-~~~YG~TE~g~~~~~~~~~~~~~~~~~~-G~p~~g~~~~-Iv--d 581 (778)
-++.+++|-+....-...-...+....| ++++ -..|++||+-. .+ +.... ..+... ...+|+.... .+ |
T Consensus 302 LWP~lk~I~~~~tGsm~~Y~p~L~~y~g--glpl~~~~Y~ASE~~~-gi-nl~P~--~~p~~~sy~L~p~~~yFEFip~~ 375 (612)
T PLN02620 302 LWPNTKYVDVIVTGTMSQYIPTLDYYSN--GLPLVCTMYASSECYF-GV-NLNPL--CKPSEVSYTLIPTMAYFEFLPVH 375 (612)
T ss_pred hCCCCcEEEEECCCCHHHHHHHHHHHcC--CCccccccccccceEE-Ee-ccCCC--CCcccceeeecCCcEEEEEeecc
Confidence 3577888777666555555566655444 4554 57799999542 22 22111 011111 2222333222 11 1
Q ss_pred C-C-----------------C-----ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEe
Q 004034 582 E-K-----------------G-----VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRD 636 (778)
Q Consensus 582 ~-~-----------------g-----~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~ 636 (778)
+ + + ..+..|+.-||+|+. +.| -||.||++++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt-----------------------~~GLyRYrlGDvv~V~ 432 (612)
T PLN02620 376 RNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTT-----------------------YAGLYRYRVGDVLRVA 432 (612)
T ss_pred CcccccccccccccccccccCccccHHHccCCCeEEEEEEe-----------------------cCceEEEecCCEEEEe
Confidence 1 0 1 125678888888876 134 48899999975
Q ss_pred c----CCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 637 K----DGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 637 ~----dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
- .-.|.|++|.+-+..+.|.+..-.++-.++.+.
T Consensus 433 Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a 470 (612)
T PLN02620 433 GFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA 470 (612)
T ss_pred eecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence 3 346999999999999999999999988777653
|
|
| >PF13745 HxxPF_rpt: HxxPF-repeated domain; PDB: 2JGP_A | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.0033 Score=54.06 Aligned_cols=44 Identities=16% Similarity=0.103 Sum_probs=30.5
Q ss_pred cccCCCCCCCCccchhhhhhhccccCCCCCcccCCChhhhhccCCC
Q 004034 95 ESLASFPSGAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVP 140 (778)
Q Consensus 95 ~~~~~~~~~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~ 140 (778)
.+..+.+.+.+||||++.+. +..+++.+.++|+++||++++|++
T Consensus 47 ~~~~~~~~~~~~~DL~l~~~--~~~~~l~~~~~Y~~~lf~~~ti~~ 90 (91)
T PF13745_consen 47 LEPIPLENGGAKFDLTLEVR--EDGDGLRLQLEYNTDLFSEETIER 90 (91)
T ss_dssp EEE-SS--SB-SSSEEEEEE--E-SS-EEEEEEEETTT--HHHHHH
T ss_pred EEEeeccccceeeeEEEEEE--ecCCeEEEEEEEEhHhCCHHHHhc
Confidence 44556778899999999988 555889999999999999998764
|
|
| >COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.4 Score=53.05 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=71.3
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCh--HHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEE
Q 004034 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM--ELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (778)
Q Consensus 231 ~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~--e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~i 308 (778)
--+|+.++...+..+|+.|...|+.+||+|.++..-++ .-+...+|+.++|+.++|+.++ .-++-..++++.++.+|
T Consensus 108 ~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI 186 (438)
T COG1541 108 FGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI 186 (438)
T ss_pred eecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence 34899999999999999999999999999998886222 1267889999999999999884 45667789999999999
Q ss_pred EEcCCcc
Q 004034 309 ITSNAVK 315 (778)
Q Consensus 309 it~~~~~ 315 (778)
.+.+++.
T Consensus 187 ~~tps~~ 193 (438)
T COG1541 187 AATPSYL 193 (438)
T ss_pred EEChHHH
Confidence 9998753
|
|
| >TIGR03335 F390_ftsA coenzyme F390 synthetase | Back alignment and domain information |
|---|
Probab=81.27 E-value=9.7 Score=43.19 Aligned_cols=80 Identities=18% Similarity=0.149 Sum_probs=62.3
Q ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH--HHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEE
Q 004034 231 ATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308 (778)
Q Consensus 231 ~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~--vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~i 308 (778)
.-+|..++...+...+..+...|+.+||++.++.+..... ...++++.+.|+..+|... .+....++++.++.++
T Consensus 104 v~~T~~dl~~~~~~~~r~~~~~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~l 180 (445)
T TIGR03335 104 FFLTWDDWKRYAEKYARSFVSQGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTGI 180 (445)
T ss_pred eeecHHHHHHHHHHHHHHHHHcCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCEE
Confidence 4578999999888889888889999999999998766532 2445788999998777543 2455678899999998
Q ss_pred EEcCC
Q 004034 309 ITSNA 313 (778)
Q Consensus 309 it~~~ 313 (778)
+....
T Consensus 181 ~~~ps 185 (445)
T TIGR03335 181 VASVF 185 (445)
T ss_pred EECHH
Confidence 86543
|
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 778 | ||||
| 2p2f_A | 652 | Acetyl-coa Synthetase, Wild-type With Acetate, Amp, | 0.0 | ||
| 2p2m_A | 652 | Acetyl-Coa Synthetase, R194a Mutation Length = 652 | 0.0 | ||
| 2p2b_A | 652 | Acetyl-coa Synthetase, V386a Mutation Length = 652 | 0.0 | ||
| 2p2q_A | 652 | Acetyl-Coa Synthetase, R584e Mutation Length = 652 | 0.0 | ||
| 2p2j_A | 652 | Acetyl-Coa Synthetase, K609a Mutation Length = 652 | 0.0 | ||
| 2p20_A | 652 | Acetyl-Coa Synthetase, R584a Mutation Length = 652 | 0.0 | ||
| 1pg3_A | 652 | Acetyl Coa Synthetase, Acetylated On Lys609 Length | 0.0 | ||
| 1ry2_A | 663 | Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe | 1e-165 | ||
| 3etc_A | 580 | 2.1 A Structure Of Acyl-Adenylate Synthetase From M | 1e-38 | ||
| 3b7w_A | 570 | Crystal Structure Of Human Acyl-Coa Synthetase Medi | 6e-29 | ||
| 2wd9_A | 569 | Crystal Structure Of Human Acyl-coa Synthetase Medi | 7e-29 | ||
| 2vsq_A | 1304 | Structure Of Surfactin A Synthetase C (Srfa-C), A N | 4e-23 | ||
| 2v7b_A | 529 | Crystal Structures Of A Benzoate Coa Ligase From Bu | 4e-22 | ||
| 3a9u_A | 536 | Crystal Structures And Enzymatic Mechanisms Of A Po | 2e-21 | ||
| 3r44_A | 517 | Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas | 1e-18 | ||
| 3tsy_A | 979 | 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr | 2e-18 | ||
| 4fuq_A | 503 | Crystal Structure Of Apo Matb From Rhodopseudomonas | 3e-18 | ||
| 3o82_A | 544 | Structure Of Base N-Terminal Domain From Acinetobac | 4e-17 | ||
| 4gr5_A | 570 | Crystal Structure Of Slgn1deltaasub In Complex With | 7e-17 | ||
| 1mdb_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb-adeny | 2e-16 | ||
| 1md9_A | 539 | Crystal Structure Of Dhbe In Complex With Dhb And A | 1e-15 | ||
| 3nyq_A | 505 | Malonyl-Coa Ligase Ternary Product Complex With Met | 3e-15 | ||
| 3rg2_A | 617 | Structure Of A Two-Domain Nrps Fusion Protein Conta | 4e-15 | ||
| 4gxq_A | 506 | Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer | 3e-14 | ||
| 1amu_A | 563 | Phenylalanine Activating Domain Of Gramicidin Synth | 7e-13 | ||
| 1ult_A | 541 | Crystal Structure Of Tt0168 From Thermus Thermophil | 1e-12 | ||
| 4gxr_A | 503 | Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len | 2e-12 | ||
| 4fut_A | 503 | Crystal Structure Of Atp Bound Matb From Rhodopseud | 4e-11 | ||
| 2d1t_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 2e-10 | ||
| 3ivr_A | 509 | Crystal Structure Of Putative Long-Chain-Fatty-Acid | 2e-10 | ||
| 2d1s_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 3e-10 | ||
| 3t5b_A | 396 | Crystal Structure Of N-Terminal Domain Of Facl13 Fr | 6e-10 | ||
| 2d1q_A | 548 | Crystal Structure Of The Thermostable Japanese Fire | 1e-09 | ||
| 3g7s_A | 549 | Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li | 2e-09 | ||
| 3l8c_A | 521 | Structure Of Probable D-Alanine--Poly(Phosphoribito | 4e-09 | ||
| 3qya_A | 582 | Crystal Structure Of A Red-Emitter Mutant Of Lampyr | 1e-08 | ||
| 3iep_A | 551 | Firefly Luciferase Apo Structure (P41 Form) Length | 1e-08 | ||
| 4g36_A | 555 | Photinus Pyralis Luciferase In The Adenylate-Formin | 1e-08 | ||
| 4g37_A | 555 | Structure Of Cross-Linked Firefly Luciferase In Sec | 1e-08 | ||
| 1ba3_A | 550 | Firefly Luciferase In Complex With Bromoform Length | 1e-08 | ||
| 4gr4_A | 469 | Crystal Structure Of Slgn1deltaasub Length = 469 | 2e-08 | ||
| 3cw8_X | 504 | 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb | 3e-07 | ||
| 1t5d_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl | 6e-07 | ||
| 2qvz_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO | 8e-07 | ||
| 1t5h_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE | 1e-06 | ||
| 2qvx_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO | 1e-06 | ||
| 3vnq_A | 544 | Co-crystal Structure Of Nrps Adenylation Protein Cy | 5e-06 | ||
| 3dlp_X | 504 | 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, | 5e-06 | ||
| 3kxw_A | 590 | The Crystal Structure Of Fatty Acid Amp Ligase From | 8e-05 | ||
| 3e7w_A | 511 | Crystal Structure Of Dlta: Implications For The Rea | 2e-04 | ||
| 3ipl_A | 501 | Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig | 3e-04 |
| >pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652 | Back alignment and structure |
|
| >pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652 | Back alignment and structure |
|
| >pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652 | Back alignment and structure |
|
| >pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663 | Back alignment and structure |
|
| >pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580 | Back alignment and structure |
|
| >pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570 | Back alignment and structure |
|
| >pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569 | Back alignment and structure |
|
| >pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304 | Back alignment and structure |
|
| >pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529 | Back alignment and structure |
|
| >pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536 | Back alignment and structure |
|
| >pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517 | Back alignment and structure |
|
| >pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979 | Back alignment and structure |
|
| >pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544 | Back alignment and structure |
|
| >pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570 | Back alignment and structure |
|
| >pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539 | Back alignment and structure |
|
| >pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539 | Back alignment and structure |
|
| >pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505 | Back alignment and structure |
|
| >pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617 | Back alignment and structure |
|
| >pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506 | Back alignment and structure |
|
| >pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563 | Back alignment and structure |
|
| >pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541 | Back alignment and structure |
|
| >pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503 | Back alignment and structure |
|
| >pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503 | Back alignment and structure |
|
| >pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509 | Back alignment and structure |
|
| >pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548 | Back alignment and structure |
|
| >pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396 | Back alignment and structure |
|
| >pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548 | Back alignment and structure |
|
| >pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549 | Back alignment and structure |
|
| >pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521 | Back alignment and structure |
|
| >pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582 | Back alignment and structure |
|
| >pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551 | Back alignment and structure |
|
| >pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555 | Back alignment and structure |
|
| >pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555 | Back alignment and structure |
|
| >pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550 | Back alignment and structure |
|
| >pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub Length = 469 | Back alignment and structure |
|
| >pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504 | Back alignment and structure |
|
| >pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504 | Back alignment and structure |
|
| >pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504 | Back alignment and structure |
|
| >pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544 | Back alignment and structure |
|
| >pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504 | Back alignment and structure |
|
| >pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590 | Back alignment and structure |
|
| >pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511 | Back alignment and structure |
|
| >pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652 | Back alignment and structure |
|---|
Score = 1223 bits (3168), Expect = 0.0
Identities = 346/652 (53%), Positives = 454/652 (69%), Gaps = 11/652 (1%)
Query: 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENL 182
+ + + + L+ +P++Y YK+S+ DP FW + W + Q+V + +
Sbjct: 3 QTHKHAIPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSF 60
Query: 183 DVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQV 242
GNV I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + V
Sbjct: 61 A--PGNVSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDV 117
Query: 243 CQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMD 302
C+ AN L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D
Sbjct: 118 CRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIID 177
Query: 303 CKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362
++VIT++ R ++I LK VD AL + SV+ + + T + WQ+
Sbjct: 178 SSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKR----TGSDIDWQE 231
Query: 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY 422
GRD+WW+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY
Sbjct: 232 GRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKY 291
Query: 423 AFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV 482
FDY P D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V
Sbjct: 292 VFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351
Query: 483 TIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISD 542
I YTAPT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ D
Sbjct: 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411
Query: 543 TWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWP 602
TWWQTETGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWP
Sbjct: 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWP 471
Query: 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAE 662
G RTL+GDHER+E TYF F YF+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE
Sbjct: 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 663 VESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA 722
+ESALV+HP+ AEAAVVG+ H +KGQ IYA+VTL G S EL + VRK+IG A
Sbjct: 532 IESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 723 APDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
PD +HW LPKTRSGKIMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLE 643
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663 | Back alignment and structure |
|---|
Score = 1186 bits (3072), Expect = 0.0
Identities = 310/667 (46%), Positives = 413/667 (61%), Gaps = 22/667 (3%)
Query: 121 SEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCS 179
+ S + Q Y ++K S+EDPA F+ A++F W + + +V
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPF-DKVFI 60
Query: 180 ENLDVRKGNVK-IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQL 238
+ + + + WF G N CYNC+DR+ +K AI +E ++PG ++TY +L
Sbjct: 61 PDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKEL 119
Query: 239 LQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLA 297
L++VCQ+A L +GV+KGD V +Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL
Sbjct: 120 LEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLR 179
Query: 298 QRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357
RI D KVVIT++ RG K I K IVD AL E V L Y +
Sbjct: 180 DRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP----GVRHVLVYRK---TNNPS 232
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTA 417
+ RD+ W KY T VD+EDPLFLLYTSGSTG PKGV H+T GY++
Sbjct: 233 VAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGAL 292
Query: 418 TTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIV 477
T +Y FD DV++ D GWITGH+YV YGP+L G + +VFEG P YP+ R WDI+
Sbjct: 293 LTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDII 352
Query: 478 DKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
D++KVT FY APT +R L R G+ Y+ +S KSLR LGSVGEPI W W+ +G +
Sbjct: 353 DEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNE 412
Query: 538 CPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVD-EKGVEIEG-ECSGY 594
PI DT+WQTE+G ++TPL G P KPGSA+FPFFG+ V++D G E+ G
Sbjct: 413 IPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGV 472
Query: 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVS 654
L +K++WP RT++ +H+RY TY P+PGYYFTGDG ++DKDGY W+ GRVDDV+NVS
Sbjct: 473 LAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVS 532
Query: 655 GHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS-------EELR 707
GHR+ TAE+E+A++ P AE AVVG ++ GQ + AFV L +S ++++
Sbjct: 533 GHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIK 592
Query: 708 KSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPG 767
K LV VRK IG FAAP I LPKTRSGKIMRRILRKI + + D+LGD STL++PG
Sbjct: 593 KHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPG 652
Query: 768 VVDQLIA 774
+V LI
Sbjct: 653 IVRHLID 659
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580 | Back alignment and structure |
|---|
Score = 730 bits (1888), Expect = 0.0
Identities = 157/617 (25%), Positives = 247/617 (40%), Gaps = 49/617 (7%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202
+ ++D + S+F K + + N
Sbjct: 7 HHHHHHSSGHIDDDDKHMTSLLSQFVSKTDFE--------SYEDFQENFKILVPENFNFA 58
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
Y+ +D +K+A+ W +D G + T+ L + AN+ G+ KGD V++
Sbjct: 59 YDVVDVYARDS-PEKLAMIWC-DDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
L + ML ++GA+ + + RI K+++
Sbjct: 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD------- 169
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV---PKYPTKC 379
+ + VD A EC I + + +G + +++ P +
Sbjct: 170 VPEQVDEAHAEC--GDIPLKKAKVGGDV----------LEGWIDFRKELEESSPIFERPT 217
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
ED + ++SG+ G PK V H Y + T KY + + +++ AD G
Sbjct: 218 GEVSTKNEDICLVYFSSGTAGFPKMVEHDNT-YPLGHILTAKYWQNVEDDGLHYTVADSG 276
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
W YG + G +V V++ ++ + KY VT F PT+ R L++
Sbjct: 277 WGKCVWGKLYGQWIAGCAVFVYD--YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK-- 332
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
E ++ Y+ +L+ GEP+NP + F G + + + QTET I P
Sbjct: 333 -EDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETV-VTIATFPW 387
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK--SSWPGAFRTLY-GDHERYE 616
KPGS P G + ++D G E G + I P Y D ER E
Sbjct: 388 M-EPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTE 446
Query: 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676
T+ GYY TGD D+DGY W GR DD+I SG+++G EVESAL+ HP E
Sbjct: 447 ETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLEC 503
Query: 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT 736
A+ GV V+GQ I A + L + S+ L+ L V+ + P I + P LPKT
Sbjct: 504 AITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKT 563
Query: 737 RSGKIMRRILRKIASRQ 753
SGKI R +R Q
Sbjct: 564 ISGKIRRVEIRDKDQSQ 580
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570 | Back alignment and structure |
|---|
Score = 591 bits (1526), Expect = 0.0
Identities = 135/578 (23%), Positives = 223/578 (38%), Gaps = 59/578 (10%)
Query: 188 NVKIEWFKGGIT---NICYNCLDR----NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQ 240
++ ++W + N + LD A++W N G + + +L +
Sbjct: 23 SMSLQWGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWV-NGKGKELMWNFRELSE 81
Query: 241 QVCQLANYLKD-IGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299
Q AN L G+++GD V + LP + E + +L C R G + S + R
Sbjct: 82 NSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYR 141
Query: 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA--KSGISVDVCLTYENQSAMTREN 357
+ K K ++ + + VD EC + + V
Sbjct: 142 LQMSKAKAIVAGDE---------VIQEVDTVASECPSLRIKLLVS--------------- 177
Query: 358 TKWQDGRDIW--WQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH 415
+ D W ++ ++ + T +++ + +TSG++G PK H+ +
Sbjct: 178 ---EKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLK 234
Query: 416 TATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWD 475
+ SD+ W +D GWI P GA V D
Sbjct: 235 AKMD-AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPK--FDPLVILK 291
Query: 476 IVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGD 535
+ Y + AP + R L++ + ++ Y L+ +VGE + P + G
Sbjct: 292 TLSSYPIKSMMGAPIVYRMLLQ---QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTG- 347
Query: 536 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595
I +++ QTETG + KPG I+D+KG + G +
Sbjct: 348 --LDIRESYGQTETGLTCMVSK--TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDI 403
Query: 596 CIKSSW---PGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
I+ G F + ++ ++ GD +D+DGY GR DD+IN
Sbjct: 404 GIRVKPIRPIGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIIN 460
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVP--YSEELRKSL 710
SG+RIG +EVE+AL+ HP E AV+ V+G+ + AFV L E+L K L
Sbjct: 461 SSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKEL 520
Query: 711 VLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
V+ + P KI + LPKT +GKI R LR
Sbjct: 521 QQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529 | Back alignment and structure |
|---|
Score = 425 bits (1094), Expect = e-141
Identities = 135/550 (24%), Positives = 216/550 (39%), Gaps = 46/550 (8%)
Query: 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA 259
N N K A + + TY +L ++ + A+ L+ +GV +
Sbjct: 24 NFAAYLFRLN--ETRAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEER 75
Query: 260 VIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPK 319
+++ + + LP+A L G V V + + + VI S A
Sbjct: 76 ILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGA------ 129
Query: 320 AIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
L V AL+ G + V + + + +++++
Sbjct: 130 ---LVQNVTQALESAEHDGCQLIV-----------SQPRESEPRLAPLFEELIDAAAPAA 175
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439
+ +D F LY+SGSTGKPKG +HT K +DV + A
Sbjct: 176 KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLF 235
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ G P+ GA+ ++ PT D + + +++ T+FY PTL +++
Sbjct: 236 FAYGLGNGLTFPLSVGATAILMAERPT-AD--AIFARLVEHRPTVFYGVPTLYANMLVSP 292
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG 559
N + + ++R+ S GE + F G C I D TE ++ G
Sbjct: 293 N--LPARADVAIRICTSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG 347
Query: 560 AWPQKPGSATFPFFGVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ G+ P G + + DE G + GE G L IK P A + + E+ T
Sbjct: 348 --AVEYGTTGRPVPGYEIELRDEAGHAVPDGE-VGDLYIKG--PSAAVMYWNNREKSRAT 402
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
+ + +GD R +G + GR DD++ VSG + EVE LV H EAAV
Sbjct: 403 FLG---EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAV 459
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
VGV+H AFV L SE L + L V+ ++ P I + LPKT +
Sbjct: 460 VGVDHG-GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTAT 518
Query: 739 GKIMRRILRK 748
GKI R LR+
Sbjct: 519 GKIQRFKLRE 528
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517 | Back alignment and structure |
|---|
Score = 272 bits (697), Expect = 1e-82
Identities = 109/540 (20%), Positives = 206/540 (38%), Gaps = 66/540 (12%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
A + D +TY+Q+ + A+ L +G+ KGD V + +P +E
Sbjct: 30 PRLQAYVEPSTD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A++GAV + ++ ++ + D KVVI ++DA +
Sbjct: 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAP---------SAPVIDAIRAQA 136
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G D G D + + + VE +D LF++Y
Sbjct: 137 DPPGTVTDW------------------IGADSLAERLRSAAADEPAVE-CGGDDNLFIMY 177
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKGV+HT + A+++ D + D + + V +
Sbjct: 178 TSGTTGHPKGVVHTHES-VHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVI-FSAMR 235
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G +++ D+ + W ++ + +V I P ++ + + R
Sbjct: 236 GVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYF 289
Query: 515 GSVGEPINPS---AWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
+ G P+ + + + + TE+ G L +K GSA
Sbjct: 290 ITGGAPMPEALIKIYAAKN-------IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 342
Query: 572 FFGVQPVIVDEKGVEI---EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
+ + GV EGE + IKS + + E + G++
Sbjct: 343 TMFTDVAVRGDDGVIREHGEGE----VVIKS--DILLKEYWNRPEATRDAFDN---GWFR 393
Query: 629 TGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688
TGD D +GY ++ R+ D+I G + AE+ES ++ P +E AV+G+ E G+
Sbjct: 394 TGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGE 453
Query: 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
A V + +++ + ++ + P K+ +A +P+ +GKI++ +LR+
Sbjct: 454 IAAAIVVADQNEVSEQQIVEYC----GTRLARYKLPKKVIFAEAIPRNPTGKILKTVLRE 509
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509 | Back alignment and structure |
|---|
Score = 265 bits (680), Expect = 3e-80
Identities = 118/539 (21%), Positives = 201/539 (37%), Gaps = 66/539 (12%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D+ A + LT+ L + +LA+ L GV GD V I E+ +
Sbjct: 20 PDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A A IGA+ V ++D +A + D P VV+ +DIV L
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTD---------YRDIVAGVLPSL 124
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
V + G ++D+ P A D +++
Sbjct: 125 G----GVKKAYAIGD-----------GSGPFAPFKDLASDTPF--SAPEFGAADGFVIIH 167
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
T+ G+P+G L + G ++ ++ A+ +DV +TG +
Sbjct: 168 TAAVGGRPRGALISQGN-LLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLG-LMLTLQQA 225
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
G + V+ D ++ ++ +KVT+ ++ +++ + + SLR +
Sbjct: 226 GGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPA--QLA--SLRAV 277
Query: 515 GSVGEPINPSAWR-WFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ P + N T+ Q+ET G + T P + +P SA P F
Sbjct: 278 TGLDTPETIERFEATCPN------ATFWATFGQSETSG-LSTFAP--YRDRPKSAGRPLF 328
Query: 574 GVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYYFTGD 631
+VD + + GE G + ++ P F+ + + T F G++ TGD
Sbjct: 329 WRTVAVVDAEDRPLPPGE-VGEIVLRG--PTVFKGYWNNAA--ATQ--HAFRNGWHHTGD 381
Query: 632 GCSRDKDGYHWLTGRVD--DVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 689
D DGY + GR ++I G + AEVE AL HP A+A V+GV +
Sbjct: 382 MGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEA 441
Query: 690 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
I A G + + +L V I + P + + LPK G I R ++
Sbjct: 442 IKAVCVCKPGESIAAD---ALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKT 497
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501 | Back alignment and structure |
|---|
Score = 264 bits (677), Expect = 6e-80
Identities = 94/541 (17%), Positives = 184/541 (34%), Gaps = 69/541 (12%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
G +AI + TY L + LA L + V +Y+ ++ I +
Sbjct: 15 GHHIAITDG------QESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILI 65
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
AC +++ + + + ++ +++ + ++ I D ++ A +
Sbjct: 66 HACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDI 125
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+G+ +NT V + P+ + +D +++
Sbjct: 126 TTNGL---------------LDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMF 170
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA---DCGWITGHSY---VT 448
TSG+TG K V T +A K + + + H V
Sbjct: 171 TSGTTGPQKAVPQTFRN-HYASAIGCKESLGFDRDTNWLSVLPIY-------HISGLSVL 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
++ G +V + + ++ + ++ ++T P + LM+ G +
Sbjct: 223 LRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQG-----LHEP 273
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSA 568
+L+ + G ++ + PI +++ TET +T P +P +
Sbjct: 274 YNLQKILLGGAKLSATMIETAL----QYNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329
Query: 569 TFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFP-GYY 627
P V I + GE L IK G + T F GY+
Sbjct: 330 GMPSANVDVKIKNPNKEGH-GE----LMIKG--ANVMN---GYLYPTDLT--GTFENGYF 377
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD D +GY + R D+I G I ++E+ P ++A VG + G
Sbjct: 378 NTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWG 437
Query: 688 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
Q + + S+ L+ + K + + P LP T +GK+ R L
Sbjct: 438 QVPKLYFVSESDI--SKA---QLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLY 492
Query: 748 K 748
+
Sbjct: 493 R 493
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503 | Back alignment and structure |
|---|
Score = 259 bits (665), Expect = 4e-78
Identities = 117/537 (21%), Positives = 210/537 (39%), Gaps = 61/537 (11%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
K+AI A ++Y++L+ + ++AN L G++ GD V +E + L
Sbjct: 17 HKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYL 71
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A R G V+ + ++ L I D +PK+V+ + +D + A +
Sbjct: 72 ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPS---------KRDGIAAIAAKVG 122
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
+ ++ D A+D +LYT
Sbjct: 123 ATVETLG-------------------PDGRGSLTDAAAGASEAFATIDRGADDLAAILYT 163
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNG 455
SG+TG+ KG + + + + T + + P DV G + +
Sbjct: 164 SGTTGRSKGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFAR 222
Query: 456 ASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLG 515
S++ D + D++ + T+ PT L++ +T+ + +R+
Sbjct: 223 GSMIFLPK----FDPDKILDLMAR--ATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFI 274
Query: 516 SVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV 575
S P+ R + G + + + TET M T P + PG+ GV
Sbjct: 275 SGSAPLLADTHREWSAKTG---HAVLERYGMTETN--MNTSNPYDGDRVPGAVGPALPGV 329
Query: 576 QPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTY--FKPFPGYYFTGD 631
+ D E G E+ G+ G + +K P F+ G E T F+ G++ TGD
Sbjct: 330 SARVTDPETGKELPRGD-IGMIEVKG--PNVFK---GYWRMPEKTKSEFRD-DGFFITGD 382
Query: 632 GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 691
D+ GY + GR D++ G + E+ES + + P E+AV+GV H G+G+
Sbjct: 383 LGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVT 442
Query: 692 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
A V +G E ++ + Q+ F P K+ + LP+ GK+ + +LR+
Sbjct: 443 AVVVRDKGATIDEA---QVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRE 496
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 6e-73
Identities = 112/556 (20%), Positives = 206/556 (37%), Gaps = 72/556 (12%)
Query: 215 GDKVAIYWEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI 272
G+K AI ++ + ++ + +LA+ + GV+KG+ V + +P ++ +
Sbjct: 33 GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92
Query: 273 AMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
+ A R+ A + + S L + D + ++ + L + L+
Sbjct: 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSM---------LYENFKPVLE 143
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC-EVEWVDAEDPLF 391
+ + V G +V+ V+ ED
Sbjct: 144 KTGVERVFVV-------------------GGEVNSLSEVMDSGSEDFENVKVNPEEDVAL 184
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG---HSY-- 446
+ YT G+TG PKGV+ T + A A D HS
Sbjct: 185 IPYTGGTTGMPKGVMLTHFN-LAANALQLAVATGLSHMDTIVGCM-------PMFHSAEF 236
Query: 447 -VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTR 505
+ + G VV + + + ++KYK T + P + L+
Sbjct: 237 GLVNLMVTVGNEYVVM---GMF-NQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT 292
Query: 506 YSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ----TETGGFMITPLPGAW 561
Y L+V + P+ P+ + + Q TE M+T P
Sbjct: 293 YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP-MVTTNPPLR 351
Query: 562 PQKPGSATFPFFGVQPVIVD-EKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYET-- 617
K + P ++ ++ E G E+ GE SG + I+ P F+ + + E
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGE-SGEIVIRG--PNIFKGYWKREK--ENQE 406
Query: 618 --TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
Y + ++ TGD D++G+ RV +VI G+ I E+E+ L+ H +
Sbjct: 407 CWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMD 466
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYS---EELRKSLVLAVRKQIGAFAAPDKIHWAPG 732
AV+G E G+ AF+ L E++ + VR++I + ++ +
Sbjct: 467 VAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIE----WVRERISGYKRVREVEFVEE 522
Query: 733 LPKTRSGKIMRRILRK 748
LP+T SGK++RR+LR+
Sbjct: 523 LPRTASGKLLRRLLRE 538
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505 | Back alignment and structure |
|---|
Score = 242 bits (620), Expect = 9e-72
Identities = 112/551 (20%), Positives = 191/551 (34%), Gaps = 82/551 (14%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L D+ A+ + + +LTY++L A + V ++
Sbjct: 28 LSPAPTGAPADRPALRFG------ERSLTYAELAAAAGATAG-----RIGGAGRVAVWAT 76
Query: 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
ME +A++A G + LA + D P +V+ + P L+
Sbjct: 77 PAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALER 136
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ A + D
Sbjct: 137 VDVDVRARGA-------------------------------------------VPEDGAD 153
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
DP ++YTSG+TG PKG + + T A+ + DV + G
Sbjct: 154 DGDPALVVYTSGTTGPPKGAVIPRRA-LATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD-GNEYVT 504
GP+ G SV + + ++ T+ + PT+ + +
Sbjct: 213 LGILGPLRRGGSVRHLGR----FSTEGAARELND-GATMLFGVPTMYHRIAETLPADPEL 267
Query: 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQK 564
+ R+L S + G + + + TET G +
Sbjct: 268 AKALAGARLLVSGSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPR 322
Query: 565 PGSATFPFFGVQPVIVDEKGVEI---EGECSGYLCIKSSWPGAFRTLYGDHERYETT--Y 619
G+ P GV+ +V+E G I +GE G + ++ P F R + T
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRG--PNLFT---EYLNRPDATAAA 377
Query: 620 FKPFPGYYFTGDGCSRDKDGYHWLTGR-VDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
F G++ TGD RD DGY + GR D+I G++IG E+E+AL+ HP+ EAAV
Sbjct: 378 FTED-GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436
Query: 679 VGVEHEVKGQGIYAFVTLVE-GVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737
G G+ I A++ + P + +L V ++ P + + +P+
Sbjct: 437 TGEPDPDLGERIVAWIVPADPAAPPALG---TLADHVAARLAPHKRPRVVRYLDAVPRND 493
Query: 738 SGKIMRRILRK 748
GKIM+R L +
Sbjct: 494 MGKIMKRALNR 504
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617 | Back alignment and structure |
|---|
Score = 244 bits (626), Expect = 2e-71
Identities = 119/568 (20%), Positives = 220/568 (38%), Gaps = 52/568 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D +A+ + L+Y +L Q LA L+ G+K G+ ++ L + EL I
Sbjct: 39 SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITF 92
Query: 275 LACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALD 332
A ++G V A L +P ++I R D ++ +
Sbjct: 93 FALLKLGVA--PVLALFSHQRSELNAYASQIEPALLIAD----RQHALFSGDDFLNTFVT 146
Query: 333 ECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFL 392
E + S+ V D + QD + A++ +
Sbjct: 147 EHS----SIRVVQLLN-------------DSGEHNLQDAINHPAEDFTATPSPADEVAYF 189
Query: 393 LYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-TYGP 451
+ G+TG PK + T Y ++ + Y C S + G
Sbjct: 190 QLSGGTTGTPKLIPRTHNDY-YYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGV 248
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
L G +VV+ P + + +++K++V + P V ++ E +R SL
Sbjct: 249 FLAGGTVVL----AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASL 304
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
++L G ++ + +G C + + E G T L + + + +P
Sbjct: 305 KLLQVGGARLSATLAARIPAEIG---CQLQQVFGMAE-GLVNYTRLDDSAEKIIHTQGYP 360
Query: 572 -FFGVQPVIVDEKGVEI-EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFT 629
+ + D +G + +GE G L + P FR Y + + F G+Y +
Sbjct: 361 MCPDDEVWVADAEGNPLPQGE-VGRLMTRG--PYTFRGYYKSPQHNASA-FDA-NGFYCS 415
Query: 630 GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 689
GD S D +GY + GR D IN G +I E+E+ L+ HP AA+V +E E+ G+
Sbjct: 416 GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEK 475
Query: 690 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749
A++ + E + + ++R+ L + I F PD++ LP T GK+ ++ LR+
Sbjct: 476 SCAYLVVKEPLR-AVQVRRFL---REQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQW 531
Query: 750 ASRQLDELGDTSTLADPGVVDQLIALAD 777
+ + + + + + ++ L D
Sbjct: 532 LASRASAGRASIPASKAALREVILPLLD 559
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 1e-69
Identities = 116/544 (21%), Positives = 222/544 (40%), Gaps = 52/544 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TY+ + ++A+ L IG+++GD ++++LP E +A
Sbjct: 36 SSKPCLI----NGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF 91
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
L + GA+ + + LA+ + K++IT + D
Sbjct: 92 LGASHRGAIITAANPFSTPAELAKHAKASRAKLLIT------------QACYYEKVKDFA 139
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+S + V +C+ + + ++ + + +D + L Y
Sbjct: 140 RESDVKV-MCVDSAPDGCLH-------------FSELTQADENEAPQVDISPDDVVALPY 185
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 186 SSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA +++ P + + G +++KYKV+I P ++ S+ + + + ++ SL
Sbjct: 246 LRVGAPILIM---PKF-EIGSLLGLIEKYKVSIAPVVPPVMMSIAK--SPDLDKHDLSSL 299
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---PQKPGSA 568
R++ S G P+ + + TE G + L A KPG+
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQ--ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
+ IVD E G + G +CI+ + D E T K G+
Sbjct: 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRG--DQIMKGYLNDPEATSRTIDK--EGWL 413
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD D D ++ R+ ++I G ++ AE+E+ L++HP+ ++AAVVG++ E G
Sbjct: 414 HTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAG 473
Query: 688 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ AFV E +E+ + + KQ+ + ++ + +PK SGKI+R+ L+
Sbjct: 474 EVPVAFVVKSEKSQATED---EIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLK 530
Query: 748 KIAS 751
+ +
Sbjct: 531 EKLA 534
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 2e-68
Identities = 122/554 (22%), Positives = 204/554 (36%), Gaps = 52/554 (9%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L +++ +AI + L+Y +L + LA L + G+ KGD ++ LP
Sbjct: 36 LTVGVQS-HPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLP 88
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E I A + G V V+ A L I +PK++I S +
Sbjct: 89 NVAEFYIVFFALLKAGVV--VLNALYSHRQYELNAFIKQIQPKLLIGSRQHE----VFSN 142
Query: 324 KDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEW 383
+D+ D I + + + G W + + +
Sbjct: 143 NQFIDSLHDVNLSPEIILML------------NHQATDFGLLDWIETPAETFV---DFSS 187
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443
A++ F + GSTG PK + T Y ++ + C
Sbjct: 188 TPADEVAFFQLSGGSTGTPKLIPRTHNDY-DYSVRASAEICGLNSNTRLLCALPAPHNFM 246
Query: 444 -HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
S G + G VV+ P+ + I+ +++V + P+ V + +
Sbjct: 247 LSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ- 301
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWP 562
+ +SL++L G S R V+ C + + E G T L +
Sbjct: 302 -YKDQIQSLKLLQVGGASFPESLARQVPEVLN---CKLQQVFGMAE-GLVNYTRLDDSDE 356
Query: 563 QKPGSATFPFFGVQPV-IVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETTYF 620
Q + P + IVDE+ E+ GE G L + P F Y E F
Sbjct: 357 QIFTTQGRPISSDDEIKIVDEQYREVPEGE-IGMLATRG--PYTFCGYYQSPEHNSQV-F 412
Query: 621 KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680
YY++GD R DG + GR+ D IN G +I + E+E ++ HP+ AA+V
Sbjct: 413 DE-DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVA 471
Query: 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGK 740
+ E G+ AF+ + LR+ L + I + PD+I LP T GK
Sbjct: 472 IVDEQFGEKSCAFIVSRNPELKAVVLRRHL---MELGIAQYKLPDQIKLIESLPLTAVGK 528
Query: 741 IMRRILRKIASRQL 754
+ ++ LR I +
Sbjct: 529 VDKKQLRSILNTST 542
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 2e-67
Identities = 106/555 (19%), Positives = 178/555 (32%), Gaps = 91/555 (16%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ P LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALA----VPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----------VADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + D+ Y E + P F+ Y
Sbjct: 122 SG---------------------ARIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + + TE + K G+ P F
Sbjct: 277 VTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNS-LYMRQP----KTGTEMAPGF 328
Query: 574 GVQPVIVDEKGVEIE----GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY-- 627
+ IV G E GE G L + ++ F GY
Sbjct: 329 FSEVRIVRIGGGVDEIVANGE-EGELIVA---------------ASDSA----FVGYLNQ 368
Query: 628 -------------FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674
T D +G + GRVDD+I G I +E+E L + P
Sbjct: 369 PQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVT 428
Query: 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGL 733
E V+G+ + GQ + A V G S + L ++ F P + L
Sbjct: 429 EVVVIGLADQRWGQSVTACVVPRLGETLSADALDT---FCRSSELADFKRPKRYFILDQL 485
Query: 734 PKTRSGKIMRRILRK 748
PK K++RR L +
Sbjct: 486 PKNALNKVLRRQLVQ 500
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 1e-66
Identities = 121/556 (21%), Positives = 210/556 (37%), Gaps = 60/556 (10%)
Query: 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP 265
L GD++AI + +Y +L + +LA + +G+++ D V++ LP
Sbjct: 31 LRDRAAK-YGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 266 MLMELPIAMLACARIGAVHSVVFA--GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHL 323
+ E + A R+GA+ VFA S + + I +A
Sbjct: 84 NIKEFFEVIFALFRLGAL--PVFALPSHRSSEITYFCEFAEAAAYIIPDAYS----GFDY 137
Query: 324 KDIVDAALDECA--KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381
+ + + K+ I + + +D+ + EV
Sbjct: 138 RSLARQVQSKLPTLKNIIVAG------------------EAEEFLPLEDLHTEPVKLPEV 179
Query: 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441
+ D FL + GSTG K + T Y +++ S VY
Sbjct: 180 ---KSSDVAFLQLSGGSTGLSKLIPRTHDDY-IYSLKRSVEVCWLDHSTVYLAALPMAHN 235
Query: 442 TG-HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
S G + G VV+ P ++ ++++ KVTI P L M +
Sbjct: 236 YPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS 291
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
R SL+VL G + A R V G C + + E T L
Sbjct: 292 --SRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG---CTLQQVFGMAEGLVNY-TRLDDP 345
Query: 561 WPQKPGSATFPFF-GVQPVIVDEKGVEIE-GECSGYLCIKSSWPGAFRTLYGDHERYETT 618
+ P + + D+ +++ GE +G+L + P R Y E +
Sbjct: 346 EEIIVNTQGKPMSPYDESRVWDDHDRDVKPGE-TGHLLTRG--PYTIRGYYKAEEHNAAS 402
Query: 619 YFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678
F G+Y TGD +DGY + GR D IN G ++ EVE+ L++HP +AA+
Sbjct: 403 -FTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460
Query: 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738
V + + G+ F+ + P + EL+ L + + A+ PD++ + P+T
Sbjct: 461 VSMPDQFLGERSCVFIIPRDEAPKAAELKAFL---RERGLAAYKIPDRVEFVESFPQTGV 517
Query: 739 GKIMRRILRKIASRQL 754
GK+ ++ LR+ S +L
Sbjct: 518 GKVSKKALREAISEKL 533
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550 | Back alignment and structure |
|---|
Score = 229 bits (585), Expect = 2e-66
Identities = 99/562 (17%), Positives = 191/562 (33%), Gaps = 45/562 (8%)
Query: 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKG 257
+ + R A + +A D ++ +TY++ + +LA +K G+
Sbjct: 22 AGEQLHKAMKRY--ALVPGTIAFT----DAHIEVNITYAEYFEMSVRLAEAMKRYGLNTN 75
Query: 258 DAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRG 317
+++ ++ + +L IG + ++ L + +P VV
Sbjct: 76 HRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFV------- 128
Query: 318 PKAIHLKDIVDAALDECAKSGISVD-VCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYP 376
K + L+ K I + + + + + + P
Sbjct: 129 -----SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVP 183
Query: 377 TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYM--VHTATTFKYAFDYKPSDVYWC 434
+ + ++ +SGSTG PKGV A + P
Sbjct: 184 ----ESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS 239
Query: 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRS 494
G T G ++ G VV+ + + YK+ PTL
Sbjct: 240 VVPFHHGFGMF-TTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSF 294
Query: 495 LMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMI 554
+ + + +Y +L + S G P++ I + TET
Sbjct: 295 FAK--STLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETTS--A 348
Query: 555 TPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHE 613
+ KPG+ + +VD + G + G LC++ P + E
Sbjct: 349 ILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG--PMIMSGYVNNPE 406
Query: 614 RYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673
K G+ +GD D+D + ++ R+ +I G+++ AE+ES L+ HP
Sbjct: 407 ATNALIDKD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 464
Query: 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPG 732
+A V G+ + G+ A V L G +E+ +V V Q+ + +
Sbjct: 465 FDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVVFVDE 521
Query: 733 LPKTRSGKIMRRILRKIASRQL 754
+PK +GK+ R +R+I +
Sbjct: 522 VPKGLTGKLDARKIREILIKAK 543
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548 | Back alignment and structure |
|---|
Score = 225 bits (577), Expect = 3e-65
Identities = 106/541 (19%), Positives = 193/541 (35%), Gaps = 47/541 (8%)
Query: 226 DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285
+ +Y++ L++ C L L++ G+ + + E I ++A IG +
Sbjct: 46 NAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVA 105
Query: 286 VVFAGFSSDSLAQRIMDCKPKVVITS-----NAVKRGPKAIHLKDIVDAALDECAKSGIS 340
++ L + KP +V +S + +K IV +
Sbjct: 106 PTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQC 165
Query: 341 VDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTG 400
+D + + K VE E ++ +SGSTG
Sbjct: 166 LDTFIKRNTPPGFQASSFKT--------------------VEVDRKEQVALIMNSSGSTG 205
Query: 401 KPKGVLHTTGGY--MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASV 458
PKGV T A Y P G T G ++ G V
Sbjct: 206 LPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF-TTLGYLICGFRV 264
Query: 459 VVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518
V+ + D + YK T PTL L + +E + +Y +L + S G
Sbjct: 265 VML---TKF-DEETFLKTLQDYKCTSVILVPTLFAILNK--SELLNKYDLSNLVEIASGG 318
Query: 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPV 578
P++ + + TET +I KPG++ +
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAK 374
Query: 579 IVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK 637
++D + + G +C+K P + + E + + G+ TGD D+
Sbjct: 375 VIDLDTKKSLGPNRRGEVCVKG--PMLMKGYVNNPEATKELIDEE--GWLHTGDIGYYDE 430
Query: 638 DGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLV 697
+ + ++ R+ +I G+++ AE+ES L+ HP +A V GV V G+ A V L
Sbjct: 431 EKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLE 490
Query: 698 EGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDE 756
G +E+ ++ V Q+ + + +PK +GKI R +R+I + + +
Sbjct: 491 SGKNMTEK---EVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547
Query: 757 L 757
+
Sbjct: 548 M 548
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 2e-61
Identities = 114/546 (20%), Positives = 211/546 (38%), Gaps = 44/546 (8%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
K + + TYS + Q+A +GV + D V++ LP E ++
Sbjct: 75 ATKPCLI----NGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSF 130
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + GA + F+ +A++ K++IT VD
Sbjct: 131 LAASFRGATATAANPFFTPAEIAKQAKASNTKLIITE------------ARYVDKIKPLQ 178
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
G+ + VC+ + ++ + Q VE + +D + L Y
Sbjct: 179 NDDGVVI-VCIDDNESVPIPEGCLRFTE----LTQSTTEASEVIDSVE-ISPDDVVALPY 232
Query: 395 TSGSTGKPKGVLHTTGGY---MVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TG PKGV+ T G + + DV C I + +
Sbjct: 233 SSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCG 292
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
+ GA++++ P + + +++ + KVT+ P +V ++ + + +Y S+
Sbjct: 293 LRVGAAILIM---PKF-EINLLLELIQRCKVTVAPMVPPIVLAIAK--SSETEKYDLSSI 346
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGG-FMITPLPGA--WPQKPGSA 568
RV+ S P+ + + + TE G ++ +P K G+
Sbjct: 347 RVVKSGAAPLGKELEDAVNAKFPN--AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGAC 404
Query: 569 TFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYY 627
+ IVD + G + G +CI+ + + T K G+
Sbjct: 405 GTVVRNAEMKIVDPDTGDSLSRNQPGEICIRG--HQIMKGYLNNPAATAETIDKD--GWL 460
Query: 628 FTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKG 687
TGD D D ++ R+ ++I G ++ AE+E+ L+ HP + AVV ++ E G
Sbjct: 461 HTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520
Query: 688 QGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ AFV + SE+ + V KQ+ + +K+ + +PK SGKI+R+ LR
Sbjct: 521 EVPVAFVVKSKDSELSED---DVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLR 577
Query: 748 KIASRQ 753
+
Sbjct: 578 AKLANG 583
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 1e-43
Identities = 123/576 (21%), Positives = 199/576 (34%), Gaps = 117/576 (20%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLP----MLMEL 270
G K + G TY+++ Q+ +L L+ +GV GD V L
Sbjct: 32 GRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLE-- 87
Query: 271 PIAMLACARIGAV-HSV---VFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A A +GAV H+ + +A + + KV++ L +
Sbjct: 88 --AYFAVPGMGAVLHTANPRLSP----KEIAYILNHAEDKVLLFDPN---------LLPL 132
Query: 327 VDAALDECAKSGISVDVC-------LTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379
V+A E V + L YE
Sbjct: 133 VEAIRGELKTVQHFVVMDEKAPEGYLAYEE----------ALGEEADPV----------- 171
Query: 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVY------ 432
+ YT+G+TG PKGV+++ ++H+ A + DV
Sbjct: 172 --RV-PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228
Query: 433 -----WCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT 487
WC + G V GP L+ AS+ ++ D VT
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASL---------------VELFDGEGVTFTAG 273
Query: 488 APTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWF----FNVVGDSRCPISDT 543
PT+ +L T + K+LR L G S F V
Sbjct: 274 VPTVWLALADYLES--TGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQ--------G 323
Query: 544 WWQTETGGFM-ITPLPGAWPQKPGSATF--------PFFGVQPVIVDEKGVEIE--GECS 592
+ TET + + P V+ + DE+G + G+
Sbjct: 324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL 383
Query: 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVIN 652
G + +K W YG+ E + G++ TGD D++GY + R+ D+I
Sbjct: 384 GEVQLKGPW--ITGGYYGNEEATRSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIK 439
Query: 653 VSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVL 712
G I + ++E+AL+ HP+ EAAVV + H + A V P EEL + L
Sbjct: 440 SGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHL-- 497
Query: 713 AVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
++ + PD +A +P+T +GK ++R LR+
Sbjct: 498 -LKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALRE 532
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 9e-35
Identities = 117/608 (19%), Positives = 190/608 (31%), Gaps = 143/608 (23%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+K + + + ++ T+TY QL Q +A L+ G K GD V++ + L A
Sbjct: 25 PNKKSCTFL--NKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82
Query: 275 LACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVDAAL 331
L C G + ++ L QRI+ + KP +V+ + D ++
Sbjct: 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK----FTADELNTNP 138
Query: 332 DECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLF 391
I+++ + R WQ + D F
Sbjct: 139 KFLKIPAIALE----------------SIELNRSSSWQPTSI-----------KSNDIAF 171
Query: 392 LLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVY--W--CTADCGWITGHSYV 447
L YTSGST PKGV+ + + + F +F + W D G I
Sbjct: 172 LQYTSGSTMHPKGVMVSHHNLLDNLNKIFT-SFHMNDETIIFSWLPPHHDMGLIGCIL-- 228
Query: 448 TYGPMLNGASVVV-----FEGAPTYPDSGRSW-DIVDKYKVTIFYTAPTLVRSLMRDGN- 500
P+ G ++ F P SW + KYK TI +P N
Sbjct: 229 --TPIYGGIQAIMMSPFSFLQNP------LSWLKHITKYKATISG-SP----------NF 269
Query: 501 --EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF---FNVVGDSRCPISDTWWQ 546
+Y + R+ S + EP+ F F G + +
Sbjct: 270 AYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGL 329
Query: 547 TETGGFMITPLPGAWPQ--------------------KPGSATF-----PFFGVQPVIVD 581
E + PG+ + PGS P V I+D
Sbjct: 330 AEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV--KIID 387
Query: 582 EKG-----------VEIEGEC--SGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYF 628
+ ++ GY AF D E Y
Sbjct: 388 PDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDE--------RSAIYLR 439
Query: 629 TGD-GCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV-SHPQC--AEAAVVGVEHE 684
TGD G + ++TGR+ D+I + G ++E +L+ S + A ++ E
Sbjct: 440 TGDLGFLH--ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEE 497
Query: 685 VKGQ-GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAP--GLPKTRSGK 740
+ + + V + + L + V + I P +P T SGK
Sbjct: 498 HEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ--LEVHTIVLIPLKAMPHTTSGK 555
Query: 741 IMRRILRK 748
I R RK
Sbjct: 556 IRRNFCRK 563
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 1e-29
Identities = 101/584 (17%), Positives = 178/584 (30%), Gaps = 149/584 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D TY QL + +A ++ + + V+++ ++ +
Sbjct: 19 DFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A + +G + + + I KP ++I + I L
Sbjct: 73 A---------LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGISL--- 120
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
V L + + P + V
Sbjct: 121 ----------------VSL-------------------SEIESAKLAEMPYERTHS-VKG 144
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMV-H-------TATTFKYAFDYKPSDVYWCTADC 438
+D ++++TSG+TG+PKGV + H AFD
Sbjct: 145 DDNYYIIFTSGTTGQPKGV-------QISHDNLLSFTNWMIEDAAFDVPKQPQ------- 190
Query: 439 GWITGHSYV-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAP 489
+ Y + G ++ P D + + + + V I+ + P
Sbjct: 191 -MLAQPPYSFDLSVMYWAPTLALGGTLFA---LPKELVADFKQLFTTIAQLPVGIWTSTP 246
Query: 490 TLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPI 540
+ M + + +L GE + S R F ++ +
Sbjct: 247 SFADMAMLSDDFCQAKMP--ALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATV 304
Query: 541 SDTWWQTETGGFMITPLPGAWPQKP--GSATFPFFGVQPVIVDEKG----VEIEGECSGY 594
+ + + IT + G P I+DE G +GE
Sbjct: 305 ALSAIE-------ITREMVDNYTRLPIGY---PKPDSPTYIIDEDGKELSSGEQGE---- 350
Query: 595 LCIKSSWPGAFRTLYGDHERYETTY--FKPFPGY--YFTGDGCSRDKDG---YHWLTGRV 647
+ + + P + G E T F F G Y TGD S +D Y GR+
Sbjct: 351 IIV--TGPAVSK---GYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYG---GRL 402
Query: 648 DDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE-HEVKGQGIYAFVTLVEGVPYSEEL 706
D I +G+RI +V L P A A V E K Q + A++ + +GV +
Sbjct: 403 DFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR 462
Query: 707 RKSLVLAVRKQIGA----FAAPDKIHWAPGLPKTRSGKIMRRIL 746
L A++ + + P K + LP T +GKI + L
Sbjct: 463 ELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTL 506
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 3e-29
Identities = 127/568 (22%), Positives = 208/568 (36%), Gaps = 129/568 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D A+ + TL+Y +L ++ ++A L+ G KG V +Y +EL I +L
Sbjct: 479 DAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGIL 532
Query: 276 ACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDA 329
+ GA A D ++ + D ++T +K
Sbjct: 533 GVLKAGA------AYLPVDPKLPEDRISYMLADSAAACLLTHQEMK-------------E 573
Query: 330 ALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDP 389
E +G ++ + D + + + +D DP
Sbjct: 574 QAAELPYTGTTLFI------------------DDQTRF------EEQASDPATAIDPNDP 609
Query: 390 LFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-- 447
+++YTSG+TGKPKG + T AF D +++ +Y
Sbjct: 610 AYIMYTSGTTGKPKGNITTHANIQGLVKHVDYMAFS--DQDT--------FLSVSNYAFD 659
Query: 448 -----TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
Y MLN A +++ + T D+ R D++ + V + + L L G +
Sbjct: 660 AFTFDFYASMLNAARLIIADEH-TLLDTERLTDLILQENVNVMFATTALFNLLTDAGED- 717
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPISDTWWQTETGGFM 553
K LR + GE + R ++G + + T
Sbjct: 718 ----WMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHV------- 766
Query: 554 ITPLPGAWPQKP-GSATFPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTL 608
+ LP + P G P I++E+ GE LCI S G +
Sbjct: 767 VHDLPDSISSLPIGK---PISNASVYILNEQSQLQPFGAVGE----LCI--SGMGVSK-- 815
Query: 609 YGDHERYETTYFK----PF-PGY--YFTGDGCSRDKDG---YHWLTGRVDDVINVSGHRI 658
G R + T K PF PG Y TGD DG Y GR+DD + + GHRI
Sbjct: 816 -GYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA---GRIDDQVKIRGHRI 871
Query: 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQI 718
E+E L +P +A VV HE I A++ + +E+++ L +KQ+
Sbjct: 872 ELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLS-AEDVKAHL----KKQL 926
Query: 719 GAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
A+ P + LP T +GK+ +R+L
Sbjct: 927 PAYMVPQTFTFLDELPLTTNGKVNKRLL 954
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 91/580 (15%), Positives = 180/580 (31%), Gaps = 146/580 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
D+ A W DA +TY QL + LA+++ +++Y M E+ I L
Sbjct: 16 DQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFL 69
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
V AG +D + + + K+++++ AV
Sbjct: 70 G---------CVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAV------------ 108
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ + +S D N V
Sbjct: 109 ---TVTDLPVRIVSEDNLKDIFFTHKGNTPNP----------------------EHAVKG 143
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
++ +++YTSGSTG PKGV T +V F+ + V ++ +
Sbjct: 144 DENFYIIYTSGSTGNPKGVQITYNC-LVSFTKWAVEDFNLQTGQV--------FLNQAPF 194
Query: 447 V-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497
Y ++ G ++ + +++ + ++ + P+ +
Sbjct: 195 SFDLSVMDIYPSLVTGGTLWA---IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLM 251
Query: 498 DGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPISDTWWQTE 548
+ + + +++ GE + R + ++ T
Sbjct: 252 EASF--SESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGI--- 306
Query: 549 TGGFMITPLPGAWPQKPGSATF--PFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWP 602
+ + S + +I+ E G +GE + I P
Sbjct: 307 -------HVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGE----IVI--VGP 353
Query: 603 GAFRTLYGDHERYETTY--FKPFPGY--YFTGDGCSRDKDGYHWLT-------GRVDDVI 651
G E T F G Y TGD + ++ GR+D I
Sbjct: 354 SVSV---GYLGSPELTEKAFTMIDGERAYKTGD--AG------YVENGLLFYNGRLDFQI 402
Query: 652 NVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV-----PYSEEL 706
+ G+R+ E+E L + A +V ++ K + A V E + +
Sbjct: 403 KLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAI 462
Query: 707 RKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+K L +++ + P K + +P T +GK+ R+ L
Sbjct: 463 KKEL----NERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 1e-27
Identities = 89/581 (15%), Positives = 155/581 (26%), Gaps = 128/581 (22%)
Query: 216 DKVAIYWEANDPGVDA----TLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
+ A+ G TY +L + Q+AN + + G A+ + L +
Sbjct: 35 EWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASLH-GRAIAVSLDRSLIAF 93
Query: 272 IAMLACARIGAVHSVVFA------GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
++ + G G +D + + D + +
Sbjct: 94 AIIVGIMKSGN------TYVPIEAGLPNDRKSFLLRDSRAAMAFV--------------- 132
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
+ + V D ++ + + + T +
Sbjct: 133 --CDNNFDGVELPPETKVL-----------------DTKNQSFIENLSTQDTSDILNNYP 173
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+LLYTSGSTG PKGV + + + + ++ S
Sbjct: 174 ENLDAYLLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNVAPKSLELGGVGKFLCLAS 232
Query: 446 YV-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498
+ G V + VT P+L+
Sbjct: 233 RAFDVHIGEMFLAWRFGLCAVT---GERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV 289
Query: 499 GNEYVTRYSRKSLRVLGSVGEPINPSAW-RW-------FFNVVGDSRCPISDTWWQTETG 550
+ L LG GE + P W NV G + I + +
Sbjct: 290 PEDA------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD 343
Query: 551 GFMITPLP-GAWPQKPGSATFPFFGVQPVIVDEK-------GVEIEGECSGYLCIKSSWP 602
G P ++ G+ GE L I
Sbjct: 344 S---DTRCIGH----------PLGDSVAHVLAPGSNEHVKKGM--AGE----LVI--EGS 382
Query: 603 GAFRTLYGDHERYETTYFKPFPGY--YFTGDGCSRDKDG---YHWLTGRVDDVINVSGHR 657
G R + F G Y TGD D D + GR D+ + V G R
Sbjct: 383 LVAN---GYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFL---GRKDEQVKVRGQR 436
Query: 658 IGTAEVESALVSHPQCAEAAVVGVEHE--VKGQGIYAFVT-----LVEGVPYSEELRKSL 710
+ EV + S V + + Q + +FV + + + E K +
Sbjct: 437 LELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEI 496
Query: 711 VLAVRKQIGA----FAAPDKIHWAPGLP-KTRSGKIMRRIL 746
++R+ + PD I +P + S K + L
Sbjct: 497 NNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKAL 537
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 3e-27
Identities = 89/580 (15%), Positives = 179/580 (30%), Gaps = 147/580 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDA-VIIYLPMLMELPIAM 274
A + +LTY +L +Q + A ++ + + +++Y M + ++
Sbjct: 16 QTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSF 69
Query: 275 LACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325
L V AG S+ +A+ I +++I
Sbjct: 70 LG---------SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIH--------------- 105
Query: 326 IVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVD 385
A L A V ++ + + +WV
Sbjct: 106 --AAGLSIDAVGQQIQTVSAEELLENEGGSVS----------------------QDQWVK 141
Query: 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445
+ +++YTSGSTG PKGV + + F + ++
Sbjct: 142 EHETFYIIYTSGSTGNPKGVQISAAN-LQSFTDWICADFPVSGGKI--------FLNQAP 192
Query: 446 YV-------TYGPMLNGASVVVFEGAP--TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496
+ Y + +G ++ ++ + K + ++ + P+ V+ +
Sbjct: 193 FSFDLSVMDLYPCLQSGGTLHC---VTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCL 249
Query: 497 RDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSR---------CPISDTWWQT 547
D ++ GE + S + ++ ++ T
Sbjct: 250 MDPG--FSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSV-- 305
Query: 548 ETGGFMITPLPGAWPQKPGSAT--FPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSW 601
+ + S F + I+DE+G +GE + I +
Sbjct: 306 --------EITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGE----IVI--AG 351
Query: 602 PGAFRTLYGDHERYETTY--FKPFPGY--YFTGDGCSRDKDGYHWLT-------GRVDDV 650
P R G E T F G Y TGD + ++ GR+D
Sbjct: 352 PSVSR---GYLGEPELTEKAFFSHEGQWAYRTGD--AG------FIQDGQIFCQGRLDFQ 400
Query: 651 INVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSL 710
I + G+R+ E+E + A V+ + + + A + E E L
Sbjct: 401 IKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQ---L 457
Query: 711 VLAVRKQIGA----FAAPDKIHWAPGLPKTRSGKIMRRIL 746
A++K++ A + P K + + T +GKI R+ +
Sbjct: 458 TSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRI 497
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 2e-26
Identities = 121/573 (21%), Positives = 202/573 (35%), Gaps = 145/573 (25%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +L
Sbjct: 54 NNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGIL 107
Query: 276 ACARIGAVHSVVFAG---------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326
A V+ AG + + + + D + ++++T +
Sbjct: 108 A---------VLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV----------- 147
Query: 327 VDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDA 386
+ +G + I ++ + +
Sbjct: 148 --HLIHNIQFNGQVEIF------------------EEDTIKIREGTNLHVP------SKS 181
Query: 387 EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSY 446
D +++YTSG+TG PKG + G + + F+ + + D S
Sbjct: 182 TDLAYVIYTSGTTGNPKGTMLEHKG-ISNLKVFFENSLNVTEKDR--------IGQFASI 232
Query: 447 V-------TYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG 499
+ +L GAS+ + T D + +++ ++T+ PT V L +
Sbjct: 233 SFDASVWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDPER 291
Query: 500 NEYVTRYSRKSLRVLGSVGEPINPSAW-RWF-----FNVVGDSRCPISDTWWQTETGGFM 553
S++ L + G +PS +W N G + I T W
Sbjct: 292 I--------LSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTICATTWVATKETIG 343
Query: 554 ITPLPGAWPQKPGSATFPFFGVQPVIVDEKG----VEIEGECSGYLCIKSSWPGAFRTLY 609
+ G P T Q IVDE V GE LCI G
Sbjct: 344 HSVPIG----APIQNT------QIYIVDENLQLKSVGEAGE----LCI-----G------ 378
Query: 610 GD------HERYETTYFK----PF-PGY--YFTGDGCSRDKDG---YHWLTGRVDDVINV 653
G+ +R E T K PF PG Y TGD DG Y GR+D+ + +
Sbjct: 379 GEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEY---LGRIDNQVKI 435
Query: 654 SGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLA 713
GHR+ EVES L+ H +E AV + + + A+ + +P E+LR+
Sbjct: 436 RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPL-EQLRQFS--- 491
Query: 714 VRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRIL 746
+++ + P +P T +GKI R+ L
Sbjct: 492 -SEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 3e-22
Identities = 61/347 (17%), Positives = 104/347 (29%), Gaps = 85/347 (24%)
Query: 215 GDKVAIYW---EANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271
A + E + GV TLT+SQL ++ +A L G GD V+I P +E
Sbjct: 38 PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYV 96
Query: 272 IAMLACARIGAVHSVVFAGFSSDSLA--QRIM-DCKPKVVITSNAVKRGPKAIHLKDIVD 328
+A L + G + + + ++ D P ++T+++ + V
Sbjct: 97 VAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSA-----VDDVVQHVA 151
Query: 329 AALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAED 388
E S I VD+ + +
Sbjct: 152 RRPGESPPSIIEVDLLDLDAPNG----------------YTFKED-----------EYPS 184
Query: 389 PLFLLYTSGSTGKPKGVLHT-----TGGYMVHTATTFKYAFDYKPSDVY--W--CTADCG 439
+L YTSGST P GV+ + + + P+ W D G
Sbjct: 185 TAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMG 244
Query: 440 WITGHSYVTYGPMLNGASVVVFEGAPTY----PDSGRSW-DIVDKYKVTIFYTAPTLVRS 494
+ G P+L G V+ +P P W ++ AP
Sbjct: 245 LVIGIC----APILGGYPAVLT--SPVSFLQRP---ARWMHLMASDFHAFSA-AP----- 289
Query: 495 LMRDGN---EYVTRYSRK---------SLRVLGSVGEPINPSAWRWF 529
N E R + ++ + S E + + + F
Sbjct: 290 -----NFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRF 331
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 1e-18
Identities = 48/329 (14%), Positives = 94/329 (28%), Gaps = 73/329 (22%)
Query: 216 DKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275
+ AI ++ Y QLL QL++YL + + G + +Y E +L
Sbjct: 42 HREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95
Query: 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECA 335
A G + + + A+ ++++ + A
Sbjct: 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILD-----------------CSTTPTPA 138
Query: 336 KSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYT 395
V V +P P A+ ++ ++
Sbjct: 139 NGLPCVPV--------------------------RHLPAAPASVARPCFAADQIAYINFS 172
Query: 396 SGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYV-------T 448
SG+TG+PK + T G AF P ++
Sbjct: 173 SGTTGRPKAIACTHAGITRLCLGQSFLAFA--PQMR--------FLVNSPLSFDAATLEI 222
Query: 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSR 508
+G +LNG V+ + D G ++ + + +L +L+ +
Sbjct: 223 WGALLNGGCCVLND--LGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPD-----CL 275
Query: 509 KSLRVLGSVGEPINPSAWRWFFNVVGDSR 537
LR L + G+ ++ R
Sbjct: 276 GGLRQLLTGGDILSVPHVRRALLRHPRLH 304
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 30/137 (21%)
Query: 622 PF--PGY--YFTGDGCSRDKDG---YHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674
P+ Y TGD D+ G + GR D + ++G+R+ +E P
Sbjct: 389 PYRGRLLRAYRTGDRARYDEQGRLRFI---GRGDGQVKLNGYRLDLPALEQRFRRQPGIL 445
Query: 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-----KIHW 729
+ A++ E Q + A+ + P + L + L P
Sbjct: 446 DCALLVRERNGVKQLLCAWTGKADASP--QALLRQL-------------PTWQRPHACVR 490
Query: 730 APGLPKTRSGKIMRRIL 746
LP T GK+ R L
Sbjct: 491 VEALPLTAHGKLDRAAL 507
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 2e-16
Identities = 43/297 (14%), Positives = 84/297 (28%), Gaps = 39/297 (13%)
Query: 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTG---GYMV 414
R ++VP+ + A+ + + G+TG PK V+ +
Sbjct: 70 DISHCLRQEPVANLVPQ--------GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALIS 121
Query: 415 HTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV-------------- 460
+ +++ + I G L G +
Sbjct: 122 WRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEG 181
Query: 461 -FEGAPTYPDSG--RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517
Y + + + + T P ++R L++ V ++SL +
Sbjct: 182 DTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITLG 239
Query: 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQP 577
G +N ++ + + C S ++ T G + L + +
Sbjct: 240 GTELNLDEIKFIASEILP-DCEFSASYGSTSALG-VSRSLLITSESQQVIYDSFSPFITY 297
Query: 578 VIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDG 632
+VD + GE G + + P AF ER G F GD
Sbjct: 298 DVVDSITAQTVEYGER-GNVIVTHLSPWAFYPRV--AERDTAIRLPGVSG--FAGDR 349
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 79/378 (20%), Positives = 132/378 (34%), Gaps = 56/378 (14%)
Query: 395 TSGSTGKPKGVLHTTGG---YMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451
+SG+TGKP V +T + TA + A +P D G TG + YG
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSI-RAAGGRPGDTLHNAFGYGLFTGGLGIHYGA 158
Query: 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511
G VV G T + ++ ++ I P+ + +L+ + + SL
Sbjct: 159 ERLGCMVVPMSGGQT----EKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSL 214
Query: 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFP 571
++ EP + VG D + +E G PG + + P
Sbjct: 215 KIGIFGAEPWTQALRNEVETRVG---IDALDIYGLSEVMG------PGVACECVETKDGP 265
Query: 572 FF---GVQPVIVDEKGVEI--EGECSGYLCIKSSWPGA-----FRTLYGDHERYETTYFK 621
P I+D E+ +G G L S A +RT D T
Sbjct: 266 VIWEDHFYPEIIDPVTGEVLPDGSQ-GELVFTSLTKEAMPVIRYRT--RD-----LTALL 317
Query: 622 PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGV 681
P +R +TGR DD++ V G + +++E +V+ P + + +
Sbjct: 318 P---------PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITL 368
Query: 682 EHEVKGQGIYAFVTLVEGVPYS------EELRKSLVLAVRKQIGAFAAPDKIHW-APG-L 733
+ + V L S L + L ++ +G + + A G +
Sbjct: 369 SRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSS---GVTVLAAGGI 425
Query: 734 PKTRSGKIMRRI-LRKIA 750
P T +GK R I R+ A
Sbjct: 426 PATATGKARRVIDRRQAA 443
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 7e-05
Identities = 72/584 (12%), Positives = 135/584 (23%), Gaps = 203/584 (34%)
Query: 6 QPHVDGHYYYYYNNNVCLSNLGVGGGASRGSTVGASSYSKPLNKSSSPPLKLIRQS---- 61
QP + Y + + N ++K N S P +RQ+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDN---------------QVFAK-YNVSRLQPYLKLRQALLEL 147
Query: 62 -----------GGGGAVVMASSGCNNNNGNNSKKMKTESFLRHVESLASFPSGAGKISRL 110
G G +A C + KI L
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLS-----------YKVQCK------MD---FKIFWL 187
Query: 111 NAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF-WADIASEFYW 169
N L + ++ Q + S
Sbjct: 188 N---LKN--CNSPETVLEMLQKLLYQI----DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 170 KEKWGQRVCSENL----DVRKGNVKIEWFKGGITNICYNC--L----DRNIEAGLGDKVA 219
K K + L +V+ F C L + + L
Sbjct: 239 KSKPYENC----LLVLLNVQNAKA-WNAFNLS-------CKILLTTRFKQVTDFLSAATT 286
Query: 220 IYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279
+ + TLT ++ L YL + D LP + L +
Sbjct: 287 THISLDH--HSMTLTPDEVKS---LLLKYL---DCRPQD-----LPREV-LTTNPRRLSI 332
Query: 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAI-HLKDIVDAALDECAKSG 338
I +++ G + K + L +S
Sbjct: 333 IAE------------------------------SIRDGLATWDNWKHVNCDKLTTIIES- 361
Query: 339 ISVDVCLTYENQS-----AMTRENTK---------WQDGRDIWWQDVVPKYPTKCEVEWV 384
S++V E + ++ + W D VV K VE
Sbjct: 362 -SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE-- 418
Query: 385 DAEDP---------LFLLYTSGSTGKPKGVLHTT--GGYMVHTATTFKYAFDYK---PSD 430
+ P ++L + LH + Y + + D D
Sbjct: 419 --KQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPK----TFDSDDLIPPYLD 470
Query: 431 VYWCTADCGWITGHSYVTY--GPMLNGASVVVFEGAPTYPD----------SGRSWDI-- 476
Y+ +S++ + + + + +F + D +W+
Sbjct: 471 QYF----------YSHIGHHLKNIEHPERMTLFR--MVFLDFRFLEQKIRHDSTAWNASG 518
Query: 477 --------VDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLR 512
+ YK I P R L+ +++ + +
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYER-LVNAILDFLPKIEENLIC 561
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 75/384 (19%), Positives = 129/384 (33%), Gaps = 53/384 (13%)
Query: 384 VDAEDPLFLLYTSGSTGKPKGVLHTTG---GYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
V + + +SG+TGKP V +T + A + A + D + G
Sbjct: 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI-RAAGARRGDKVHVSYGYGL 145
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
TG YG G +V+ F G T + ++ ++ I P+ + S+ +
Sbjct: 146 FTGGLGAHYGAERAGLTVIPFGGGQT----EKQVQLIQDFRPDIIMVTPSYMLSIADEIE 201
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
+ SLR+ EP +G D + +E G PG
Sbjct: 202 RQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---IDAVDIYGLSEVMG------PGV 252
Query: 561 WPQKPGSATFPFF---GVQPVIVDEKGVEI--EGECSGYLCIKSSWPGA-----FRTLYG 610
+ + P P I+D + E+ +GE G L S A +RT
Sbjct: 253 ASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGEL-GELVFTSLTKEALPIIRYRT--R 309
Query: 611 DHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670
D T P G +R +TGR DD++ V G + ++E L+
Sbjct: 310 D-----LTRLLP---------GTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQ 355
Query: 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----EELRKSLVLAVRKQIGAFAAPDK 726
A + + E + V + +++L ++ IG A
Sbjct: 356 RALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIG-VTAVIN 414
Query: 727 IHWAPG-LPKTRSGKIMRRI-LRK 748
+ + ++ GK R + RK
Sbjct: 415 VL-PVNGIERS-VGKARRVVDKRK 436
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| 1pg4_A | 652 | Acetyl-COA synthetase; AMP-forming, adenylate-form | 100.0 | |
| 1ry2_A | 663 | Acetyl-coenzyme A synthetase 1, acyl-activating en | 100.0 | |
| 3etc_A | 580 | AMP-binding protein; adenylate-forming acyl-COA sy | 100.0 | |
| 2vsq_A | 1304 | Surfactin synthetase subunit 3; ligase, peptidyl c | 100.0 | |
| 3ni2_A | 536 | 4-coumarate:COA ligase; 4CL, phenylpropanoid biosy | 100.0 | |
| 1mdb_A | 539 | 2,3-dihydroxybenzoate-AMP ligase; adenylation doma | 100.0 | |
| 3c5e_A | 570 | Acyl-coenzyme A synthetase ACSM2A, mitochondrial; | 100.0 | |
| 3r44_A | 517 | Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s | 100.0 | |
| 4fuq_A | 503 | Malonyl COA synthetase; ANL superfamily, methylma | 100.0 | |
| 3g7s_A | 549 | Long-chain-fatty-acid--COA ligase (FADD-1); protei | 100.0 | |
| 1t5h_X | 504 | 4-chlorobenzoyl COA ligase; adenylate-forming coen | 100.0 | |
| 3rg2_A | 617 | Enterobactin synthase component E (ENTE), 2,3-DIH | 100.0 | |
| 4dg8_A | 620 | PA1221; ANL superfamily, adenylation domain, pepti | 100.0 | |
| 2d1s_A | 548 | Luciferase, luciferin 4-monooxygenase; alpha/beta, | 100.0 | |
| 3o83_A | 544 | Peptide arylation enzyme; ligase, adenylation of 2 | 100.0 | |
| 2v7b_A | 529 | Benzoate-coenzyme A ligase; benzoate oxidation, be | 100.0 | |
| 1amu_A | 563 | GRSA, gramicidin synthetase 1; peptide synthetase, | 100.0 | |
| 3fce_A | 512 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3tsy_A | 979 | Fusion protein 4-coumarate--COA ligase 1, resvera | 100.0 | |
| 1v25_A | 541 | Long-chain-fatty-acid-COA synthetase; ligase, stru | 100.0 | |
| 4gr5_A | 570 | Non-ribosomal peptide synthetase; MBTH-like domain | 100.0 | |
| 3e7w_A | 511 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3ivr_A | 509 | Putative long-chain-fatty-acid COA ligase; structu | 100.0 | |
| 3rix_A | 550 | Luciferase, luciferin 4-monooxygenase; oxidoreduct | 100.0 | |
| 3l8c_A | 521 | D-alanine--poly(phosphoribitol) ligase subunit 1; | 100.0 | |
| 3nyq_A | 505 | Malonyl-COA ligase; A/B topology ababa sandwich be | 100.0 | |
| 3ipl_A | 501 | 2-succinylbenzoate--COA ligase; structural genomic | 100.0 | |
| 3ite_A | 562 | SIDN siderophore synthetase; ligase, non-ribosomal | 100.0 | |
| 3kxw_A | 590 | Saframycin MX1 synthetase B; fatty acid AMP ligase | 100.0 | |
| 3gqw_A | 576 | Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen | 100.0 | |
| 3t5a_A | 480 | Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C | 100.0 | |
| 4gs5_A | 358 | Acyl-COA synthetase (AMP-forming)/AMP-acid ligase | 100.0 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 100.0 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 100.0 | |
| 3hgu_A | 369 | EHPF; phenazine, antibiotic, biosynthetic protein; | 99.96 | |
| 3lax_A | 109 | Phenylacetate-coenzyme A ligase; structural genomi | 99.63 | |
| 3gxs_A | 109 | Phenylacetate-coenzyme A ligase; APC62324.1, struc | 99.57 | |
| 4eql_A | 581 | 4-substituted benzoates-glutamate ligase GH3.12; f | 98.81 | |
| 4b2g_A | 609 | GH3-1 auxin conjugating enzyme; signaling protein, | 98.64 | |
| 4epl_A | 581 | Jasmonic acid-amido synthetase JAR1; ANL adenylati | 98.63 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 92.37 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 89.23 | |
| 2xhg_A | 466 | Tyrocidine synthetase A; isomerase, nonribosomal p | 86.01 | |
| 2y27_A | 437 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.79 | |
| 2y4o_A | 443 | Phenylacetate-coenzyme A ligase; phenylacetic acid | 85.43 | |
| 3qov_A | 436 | Phenylacetate-coenzyme A ligase; acetyl-COA synthe | 83.81 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 80.02 |
| >1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-103 Score=927.48 Aligned_cols=637 Identities=54% Similarity=0.998 Sum_probs=544.8
Q ss_pred CChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHH
Q 004034 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDR 208 (778)
Q Consensus 129 ~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~ 208 (778)
++..|..++... .++|++||+++++||++||+++++.+.|.+++++ ++..+.. ...++.+||+++++|+++++|++
T Consensus 9 ~~~~~~~~~~~~-~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~wf~~~~~n~~~~~l~~ 84 (652)
T 1pg4_A 9 IPANIADRCLIN-PEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTSFA--PGNVSIKWYEDGTLNLAANCLDR 84 (652)
T ss_dssp CCHHHHHHCSSC-HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEECC--TTCCEEEESTTCEECHHHHHTGG
T ss_pred CCHHHHhhccCC-hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCcc-cccCccc--cCCCCCEECCCCChhHHHHHHHH
Confidence 344354444333 4789999999999999999999877999998887 5532211 01224699999999999999999
Q ss_pred hhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCC
Q 004034 209 NIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 209 ~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~ 288 (778)
+++ ++||++|+++.+++.+..+++||+||+++++++|++|+++||++||+|+|+++|++|++++||||+++|++++|++
T Consensus 85 ~a~-~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 85 HLQ-ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp GHH-HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECC
T ss_pred Hhc-cCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecC
Confidence 998 7999999999754334578999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccch
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 368 (778)
|.++.+++.++|+++++++||+++...+..+.+.++..+++++..+. ...+..+++++.... ...+...++.+|
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vi~~~~~~~----~~~~~~~~~~~~ 237 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN--VTSVEHVIVLKRTGS----DIDWQEGRDLWW 237 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT--CCSCCEEEEECSSCC----CCCCCBTTEEEH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC--cCCCCEEEEEeCCCC----cccccCCCceeH
Confidence 99999999999999999999999988888888888887777654320 013566777664321 112223345667
Q ss_pred hhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHH
Q 004034 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVT 448 (778)
Q Consensus 369 ~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i 448 (778)
++.+.......+.....++|++||+|||||||+||||+++|++++.+....+...+++.++|++++++|++|++|+.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~ 317 (652)
T 1pg4_A 238 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLL 317 (652)
T ss_dssp HHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTT
T ss_pred HHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHH
Confidence 77665443334445667899999999999999999999999997777666667779999999999999999999987889
Q ss_pred HHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHH
Q 004034 449 YGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRW 528 (778)
Q Consensus 449 ~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~ 528 (778)
+.+|++|++++++++.+..+++..++++|++++||+++++|++++.|++.........++++||.+++|||+++++++++
T Consensus 318 ~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~ 397 (652)
T 1pg4_A 318 YGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEW 397 (652)
T ss_dssp HHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHH
T ss_pred HHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHH
Confidence 99999999999998766667999999999999999999999999999987654344568899999999999999999999
Q ss_pred HHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccc
Q 004034 529 FFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608 (778)
Q Consensus 529 ~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY 608 (778)
+.+.+|..++++++.||+||++++++...++..+.+++++|+|++|++++|+|++|++++.|+.|||+|+||||++++||
T Consensus 398 ~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY 477 (652)
T 1pg4_A 398 YWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 477 (652)
T ss_dssp HHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEE
T ss_pred HHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhh
Confidence 99998865689999999999997766554443356789999999999999999999999999999999999999999999
Q ss_pred cCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCe
Q 004034 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 609 ~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 688 (778)
|+++++|.+.|+...+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++++++..++
T Consensus 478 ~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~ 557 (652)
T 1pg4_A 478 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557 (652)
T ss_dssp TTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEE
T ss_pred cCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCe
Confidence 99999999999876789999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhh
Q 004034 689 GIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGV 768 (778)
Q Consensus 689 ~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~ 768 (778)
.++|||+++++...++++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++++++++.++++||++
T Consensus 558 ~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~l~~p~~ 637 (652)
T 1pg4_A 558 AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGV 637 (652)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTH
T ss_pred EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCCCCCCCccccCCHHH
Confidence 99999999887666667789999999999999999999999999999999999999999999887667889999999999
Q ss_pred HHHHHhhh
Q 004034 769 VDQLIALA 776 (778)
Q Consensus 769 ~~~~~~~~ 776 (778)
++++++..
T Consensus 638 ~~~~~~~~ 645 (652)
T 1pg4_A 638 VEKLLEEK 645 (652)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
|
| >1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-103 Score=931.26 Aligned_cols=637 Identities=49% Similarity=0.868 Sum_probs=532.2
Q ss_pred CCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhh-cccccccCcccccccccccCCCcc--cccCCCCcccHHHH
Q 004034 128 LPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVRKGNVK--IEWFKGGITNICYN 204 (778)
Q Consensus 128 y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~wf~~~~~n~~~~ 204 (778)
+.+.||....... +++|.++++++++||+.||++++++ +.|.+++++ +++.+++. .+..+ .+||+++++|++++
T Consensus 10 ~~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~wf~~~~~n~~~~ 86 (663)
T 1ry2_A 10 HSSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKT-GRPSFQNNAWFLNGQLNACYN 86 (663)
T ss_dssp ---------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSS-CSBCSTTCCBSTTCEECHHHH
T ss_pred ccccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCce-eecCcccc-ccCCCCCCCcCCCCCccHHHH
Confidence 3445677766664 6789999999999999999999988 999999887 65433110 10112 59999999999999
Q ss_pred HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCE
Q 004034 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (778)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav 283 (778)
+|+++++ ++||++|+++.+++.+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++|++++||||+++|++
T Consensus 87 ~l~~~a~-~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav 165 (663)
T 1ry2_A 87 CVDRHAL-KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAI 165 (663)
T ss_dssp HTHHHHT-TCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCE
T ss_pred HHHHHhc-cCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCE
Confidence 9999998 89999999997543345789999999999999999999 999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCC
Q 004034 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (778)
Q Consensus 284 ~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (778)
++|++|.++.+++.++|+++++++||+++...+..+.+.++..++++++.+ +.++.+++++..... ...+...
T Consensus 166 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vi~~~~~~~~---~~~~~~~ 238 (663)
T 1ry2_A 166 HSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAP 238 (663)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSS
T ss_pred EEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC----CCCceEEEEecCCCC---ccccCCC
Confidence 999999999999999999999999999999888888888888877765543 456677777643210 1112234
Q ss_pred cccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhh
Q 004034 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (778)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 443 (778)
++.+|.+.+.......+.....++|++||+|||||||+||||+++|++++.+....+...+++.++|++++.+|++|++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g 318 (663)
T 1ry2_A 239 RDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318 (663)
T ss_dssp SEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHH
T ss_pred ccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhh
Confidence 56677776654443344556778999999999999999999999999987776666777899999999999999999999
Q ss_pred hhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCH
Q 004034 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (778)
Q Consensus 444 ~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (778)
+.+.++++|+.|++++++++.+.++++..++++|++++||+++++|++++.|++.........++++||.+++|||++++
T Consensus 319 ~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~ 398 (663)
T 1ry2_A 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAA 398 (663)
T ss_dssp HHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCH
T ss_pred hHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCH
Confidence 87889999999999999988776779999999999999999999999999999876543455689999999999999999
Q ss_pred HHHHHHHHHhCCCCcceecccccccccceecccCC-CCCCCCCCCcCcCcCCceEEEECC-CCceeCC-CeeeEEEEecC
Q 004034 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSS 600 (778)
Q Consensus 524 ~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~-~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~-g~~GEL~v~g~ 600 (778)
++++++.+.+|..++++++.||+||++++++...+ +..+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||
T Consensus 399 ~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 399 EVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSC
T ss_pred HHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecC
Confidence 99999999987656899999999999976655443 334567899999999999999999 9999998 99999999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
||++++|||+++++|.+.|+...+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg 558 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVG 558 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEEC
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEE
Confidence 99999999999999999998777899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCC---C-CH---HHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVP---Y-SE---ELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~---~-~~---~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
++++..++.++|||+++++.. . ++ ++.++|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 559 ~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 559 FNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred EecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 999888999999999987643 2 22 4578999999999999999999999999999999999999999999877
Q ss_pred cCcCCCCCCCCChhhHHHHHhh
Q 004034 754 LDELGDTSTLADPGVVDQLIAL 775 (778)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~ 775 (778)
.+++++.+|++||++++++++.
T Consensus 639 ~~~~~~~~~l~~p~~~~~~~~~ 660 (663)
T 1ry2_A 639 SDQLGDVSTLSNPGIVRHLIDS 660 (663)
T ss_dssp -----------CCHHHHHHHHT
T ss_pred CCCCCCcccccCHHHHHHHHHH
Confidence 6678999999999999999873
|
| >3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-83 Score=748.00 Aligned_cols=524 Identities=28% Similarity=0.385 Sum_probs=426.5
Q ss_pred ccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHH
Q 004034 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~v 271 (778)
+|.....+|+++++|+++++ ++||++|+++.+++ +..+++||+||.++++++|++|+++||++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~a~-~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVYAR-DSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHHHH-HCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHHHh-hCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 55555668899999999999 89999999986543 44689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEEccC
Q 004034 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (778)
Q Consensus 272 va~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 350 (778)
+++|||+++|++++|++|.++.+++.++++++++++||++.+.. +...+.+....+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 223444444444 333 344444322
Q ss_pred CccccccccCCCCcccchhhccCCCCCCC--C--ccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCC
Q 004034 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (778)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~ 426 (778)
. ......+.+.+....... + .....++|++||+|||||||+||||+++|.+++. ........+++
T Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~-~~~~~~~~~~~ 263 (580)
T 3etc_A 195 V----------LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLG-HILTAKYWQNV 263 (580)
T ss_dssp C----------CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHH-HHHHHHTTSCC
T ss_pred c----------ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHH-HHHHHHHhhCC
Confidence 1 011223333332222111 1 1356789999999999999999999999998544 34444556788
Q ss_pred CCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccC
Q 004034 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (778)
Q Consensus 427 ~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~ 506 (778)
.+++++++.++++|..+....++.++..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED---LSHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC---C---
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc---cccC
Confidence 99999999999999988666688999999999998642 358999999999999999999999999998863 3456
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCce
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~ 586 (778)
++++||.+++|||+++++++++|.+.+| +++++.||+||++.+++.... ...+++++|+|++|++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999887 789999999999876553322 23567899999999999999999999
Q ss_pred eCCCeeeEEEEecC---CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHH
Q 004034 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEV 663 (778)
Q Consensus 587 ~~~g~~GEL~v~g~---~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eI 663 (778)
++.|+.|||+|+++ .+++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.||
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eI 490 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEV 490 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHH
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99999999999962 26899999999999998874 6899999999999999999999999999999999999999
Q ss_pred HHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccH
Q 004034 664 ESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMR 743 (778)
Q Consensus 664 E~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R 743 (778)
|++|.+||+|.+|+|++++++..++.++|+|+++++...++.+.++|+++|+++||+||+|+.|+++++||+|+||||+|
T Consensus 491 E~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R 570 (580)
T 3etc_A 491 ESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRR 570 (580)
T ss_dssp HHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-----------
T ss_pred HHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcH
Confidence 99999999999999999999999999999999998876667778999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 004034 744 RILRKIASR 752 (778)
Q Consensus 744 ~~L~~~~~~ 752 (778)
++|++++..
T Consensus 571 ~~Lr~~~~~ 579 (580)
T 3etc_A 571 VEIRDKDQS 579 (580)
T ss_dssp ---------
T ss_pred HHHHhHhhc
Confidence 999998753
|
| >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-85 Score=826.44 Aligned_cols=572 Identities=20% Similarity=0.269 Sum_probs=472.7
Q ss_pred CCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccc-ccc
Q 004034 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVC-SEN 181 (778)
Q Consensus 103 ~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (778)
+.++|||++.+.. ++++...++|++++|+++++++++++|.++|++++++|++.++++.. +. ..+... ++ .++
T Consensus 382 ~~~~~dL~l~~~~---~~~l~~~~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~-~~e~~~-~~~~~~ 455 (1304)
T 2vsq_A 382 EKSNYDLNLMASP---GDEMLIKLAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VD-DREREF-LLTGLN 455 (1304)
T ss_dssp CCCCSSEEEEEEC---SSSCEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CC-HHHHHH-HHTTTS
T ss_pred cccccCeEEEEec---CCcEEEEEEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CC-HHHHHH-HHHhcC
Confidence 4678999887542 35678899999999999999999999999999999999999887631 11 111111 11 111
Q ss_pred ccccCCCcccccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEE
Q 004034 182 LDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVI 261 (778)
Q Consensus 182 ~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Va 261 (778)
.... .++. .+++++|+++++ ++||++|+++. ++++||+||+++++++|++|++.|+++|++|+
T Consensus 456 ~~~~-------~~~~---~~l~~~~~~~~~-~~p~~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~ 518 (1304)
T 2vsq_A 456 PPAQ-------AHET---KPLTYWFKEAVN-ANPDAPALTYS------GQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518 (1304)
T ss_dssp CCCC-------CCCC---CCHHHHHHHHHH-HCTTSEEEESS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred CCCC-------CCCC---CCHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEE
Confidence 1100 0111 258999999999 89999999976 68999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc
Q 004034 262 IYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV 341 (778)
Q Consensus 262 i~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (778)
|+++|++++++++|||+|+|++|||+||.+|.+++.++++++++++||+++........ + +..
T Consensus 519 i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-------------~----~~~ 581 (1304)
T 2vsq_A 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-------------L----PYT 581 (1304)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-------------C----CCC
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-------------c----CCC
Confidence 99999999999999999999999999999999999999999999999998765321100 0 111
Q ss_pred cEEEEEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH
Q 004034 342 DVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK 421 (778)
Q Consensus 342 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~ 421 (778)
...+.++.... + . .....+.....++++|||+|||||||+||||+++|++++ +. .+..
T Consensus 582 ~~~~~~~~~~~---------------~----~-~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~-~~-~~~~ 639 (1304)
T 2vsq_A 582 GTTLFIDDQTR---------------F----E-EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQ-GL-VKHV 639 (1304)
T ss_dssp SEEEESSCGGG---------------G----G-SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHH-HH-HSSC
T ss_pred CcEEEeccccc---------------c----c-cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHH-HH-HHHH
Confidence 22222221100 0 0 011112234578999999999999999999999999954 43 3344
Q ss_pred HhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc
Q 004034 422 YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE 501 (778)
Q Consensus 422 ~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~ 501 (778)
..+++.++|+++++++++|+.+ ++.+|.+|+.|+++++.+... ..++..+++.|++++||+++++|++++.|.+....
T Consensus 640 ~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~-~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~ 717 (1304)
T 2vsq_A 640 DYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHT-LLDTERLTDLILQENVNVMFATTALFNLLTDAGED 717 (1304)
T ss_dssp CSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGG-TTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH
T ss_pred HhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhh-cCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh
Confidence 5678889999999999999987 688999999999999987543 34899999999999999999999999999875431
Q ss_pred ccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC--CCCCCCCcCcCcCCceEEE
Q 004034 502 YVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVI 579 (778)
Q Consensus 502 ~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~--~~~~~~~~G~p~~g~~~~I 579 (778)
.+++||.+++|||++++++++.+.+.++ .+.++|.||+||++++++...... ......++|+|++|++++|
T Consensus 718 -----~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i 790 (1304)
T 2vsq_A 718 -----WMKGLRCILFGGERASVPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYI 790 (1304)
T ss_dssp -----HHHTCSEEEEESSCCCHHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEE
T ss_pred -----cCCCccEEEEecCCCCHHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEE
Confidence 3578999999999999999999999887 368999999999997655432211 1234578999999999999
Q ss_pred ECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC----CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCc
Q 004034 580 VDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSG 655 (778)
Q Consensus 580 vd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~----~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G 655 (778)
+|++++++|.|+.|||+|+| |++++||+|+++.+.+.|.. +.++||||||+|++++||+|+|+||+|||||++|
T Consensus 791 ~d~~~~~~p~G~~GEl~i~G--~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G 868 (1304)
T 2vsq_A 791 LNEQSQLQPFGAVGELCISG--MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRG 868 (1304)
T ss_dssp ECTTSCBCCTTCCEEEEEEE--TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETT
T ss_pred ECCCcCCCCCCCceEEEEec--cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECC
Confidence 99999999999999999999 99999999999999888853 2345999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCC
Q 004034 656 HRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735 (778)
Q Consensus 656 ~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 735 (778)
+||+|+|||++|.+||+|++|+|++.+++.+++.++|||+..... + .++|+++|+++||.||+|..|+++++||+
T Consensus 869 ~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~--~---~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~ 943 (1304)
T 2vsq_A 869 HRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL--S---AEDVKAHLKKQLPAYMVPQTFTFLDELPL 943 (1304)
T ss_dssp EEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS--C---HHHHHHHHHHHSCGGGSCSEEEEESCCCC
T ss_pred EeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC--C---HHHHHHHHHHhChHhhhccEEEEecccCC
Confidence 999999999999999999999999999888889999999986532 2 57899999999999999999999999999
Q ss_pred CCCCcccHHHHHHHHhc
Q 004034 736 TRSGKIMRRILRKIASR 752 (778)
Q Consensus 736 T~sGKi~R~~L~~~~~~ 752 (778)
|+||||||++|++....
T Consensus 944 t~~GKidR~~L~~~~~~ 960 (1304)
T 2vsq_A 944 TTNGKVNKRLLPKPDQD 960 (1304)
T ss_dssp CSSCSSCCSCCCCCCGG
T ss_pred CCCcccCHhhcCCcchh
Confidence 99999999999876543
|
| >3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-82 Score=730.03 Aligned_cols=505 Identities=23% Similarity=0.346 Sum_probs=430.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|.++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLENLS-NHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTTGG-GSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh-cCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 48899999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+.+..... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987643 2223322221 12 234333211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCC
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (778)
.....+.+.........+.....++|++||+|||||||+||||+++|++++........ ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 11233444433333333444567899999999999999999999999996655443321 1356788999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999877778899999999999854 489999999999999999999999999998764 345678999999999
Q ss_pred cCCCCHHHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeee
Q 004034 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~G 593 (778)
||++++++.+++.+.++ +++++|.||+||++.+.+... ......+++++|+|+++++++|+| ++|++++.|+.|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999985 488999999999997654321 112234678999999999999999 579999999999
Q ss_pred EEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCcc
Q 004034 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673 (778)
Q Consensus 594 EL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V 673 (778)
||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V 459 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEI 459 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 89999999999999888744 78999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 674 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
.+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 460 ~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~ 534 (536)
T 3ni2_A 460 SDAAVVGLKDEDAGEVPVAFVVKSEKSQAT---EDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA 534 (536)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred ceEEEEeeecCCCCceeEEEEEecCCCCCC---HHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence 999999999998899999999998776554 578999999999999999999999999999999999999998765
|
| >1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-82 Score=730.21 Aligned_cols=510 Identities=21% Similarity=0.296 Sum_probs=427.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCEEEEeC------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 47899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++.... ......+......+ +.++.++..+...
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHHhcC----CCccEEEEcCCcc---------
Confidence 999999999999999999999999999999875421 11122222322222 3444444433211
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
.|.+.........+.....++|++||+|||||||+||||+++|++++.. .......+++.++|++++.+|++|
T Consensus 162 ------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~h 234 (539)
T 1mdb_A 162 ------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS-LKRSVEVCWLDHSTVYLAALPMAH 234 (539)
T ss_dssp ------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH-HHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHH-HHHHHHhhCCCCCCEEEEeecccc
Confidence 0111111111111223457899999999999999999999999996544 444556788999999999999999
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
++++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....++++||.+++|||
T Consensus 235 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred cchhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCC
Confidence 988654 68999999999999754 489999999999999999999999999987643 22457899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCc-eEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~-~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++.+++.+.++ +++++.||+||++..... .........+++|+|+++. +++|+|+++++++.|+.|||+|+
T Consensus 309 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 384 (539)
T 1mdb_A 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (539)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEEEEcCCCCcccccC-CCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEee
Confidence 999999999999886 789999999997643332 1111112346899999764 89999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|
T Consensus 385 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~v 460 (539)
T 1mdb_A 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (539)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--cccchhhcCChhhhhhhccC--CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEE
Confidence 9 89999999999999888864 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcC
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDEL 757 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~ 757 (778)
++++++..++.++|||++++. ..+ .++|+++++++ ||.||+|+.|+++++||+|+||||+|++|++++.++++++
T Consensus 461 v~~~~~~~g~~~~a~vv~~~~-~~~---~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~ 536 (539)
T 1mdb_A 461 VSMPDQFLGERSCVFIIPRDE-APK---AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG 536 (539)
T ss_dssp EEEEETTTEEEEEEEEEESSS-CCC---HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC
T ss_pred EeccccccCceEEEEEEECCC-CCC---HHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcc
Confidence 999998889999999998743 222 57899999998 9999999999999999999999999999999998877766
Q ss_pred CC
Q 004034 758 GD 759 (778)
Q Consensus 758 ~~ 759 (778)
++
T Consensus 537 y~ 538 (539)
T 1mdb_A 537 FK 538 (539)
T ss_dssp --
T ss_pred cc
Confidence 53
|
| >3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-80 Score=724.42 Aligned_cols=519 Identities=26% Similarity=0.368 Sum_probs=438.7
Q ss_pred ccCCCCcccHHHHHHHHhhhcc-----CCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeC
Q 004034 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (778)
Q Consensus 192 ~wf~~~~~n~~~~~l~~~~~~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~ 265 (778)
.|+....+|+++++|+++++ + +||++|+++.+.+ +..+++||+||.++++++|++|+++ |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~a~-~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHWAD-MEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHHHH-HHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHHHh-hccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 67777788899999999988 7 9999999986422 2358899999999999999999998 9999999999999
Q ss_pred CChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEE
Q 004034 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (778)
Q Consensus 266 ~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 345 (778)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+.+....+ +.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVDTVASEC----PSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHHHHGGGC----TTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHHHHhhcC----CceeEEE
Confidence 99999999999999999999999999999999999999999999987642 2222222222 3455555
Q ss_pred EEccCCccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHH-HHHHHHHhh
Q 004034 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (778)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~-~~~~~~~~~ 424 (778)
.++.... .....+.+.+.......+.....++|++||+|||||||.||||+++|+ .+.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 011223333322222222334568999999999999999999999999 4542 33333 567
Q ss_pred CCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccc
Q 004034 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (778)
Q Consensus 425 ~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~ 504 (778)
++.++|++++.+|++|+.++...++.+|..|+++++.+.. .+++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP--KFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS--SCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC--CCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8899999999999999998766789999999999998642 358999999999999999999999999998763 23
Q ss_pred cCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCC
Q 004034 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (778)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g 584 (778)
..++++||.+++|||++++++++++.+.++ ++++|.||+||++.+++.... ....++++|+|+++++++|+|++|
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 446899999999999999999999999886 789999999999866543321 134678999999999999999999
Q ss_pred ceeCCCeeeEEEEe-----cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeC
Q 004034 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIG 659 (778)
Q Consensus 585 ~~~~~g~~GEL~v~-----g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~ 659 (778)
++++.|+.|||+|+ | |++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~ 467 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIG 467 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEEC
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEEcCCceEEEEecCCCEEEECCEEEC
Confidence 99999999999999 7 8999999999999988774 689999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCC--CCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCC
Q 004034 660 TAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGV--PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTR 737 (778)
Q Consensus 660 ~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~--~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~ 737 (778)
|.|||++|.+||+|.+|+|++.+++..++.++|||++.++. ...+.+.++|+++|+++||.||+|+.|+++++||+|+
T Consensus 468 p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~ 547 (570)
T 3c5e_A 468 PSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTV 547 (570)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCT
T ss_pred HHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCC
Confidence 99999999999999999999999988899999999987654 2234567899999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhc
Q 004034 738 SGKIMRRILRKIASR 752 (778)
Q Consensus 738 sGKi~R~~L~~~~~~ 752 (778)
+|||+|++|++.+..
T Consensus 548 ~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 548 TGKIQRAKLRDKEWK 562 (570)
T ss_dssp TCCBCHHHHHHHHTC
T ss_pred CcCCcHHHHHHHHHh
Confidence 999999999998754
|
| >3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-81 Score=720.44 Aligned_cols=499 Identities=21% Similarity=0.303 Sum_probs=418.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 17 ~l~~~l~~~a~-~~p~~~A~~~~~----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 91 (517)
T 3r44_A 17 NIGWMLRQRAT-VSPRLQAYVEPS----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKL 91 (517)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCeEEEeCC----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57899999999 899999999862 2469999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+....... .....++.+..
T Consensus 92 G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~----------- 147 (517)
T 3r44_A 92 GAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQA----DPPGTVTDWIG----------- 147 (517)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHSS----SCCTTCCEEEE-----------
T ss_pred CcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhcc----CCccEEEEccC-----------
Confidence 99999999999999999999999999999986542 2222222211 11111111110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+.+.+.......+.....++|++||+|||||||.||||+++|++++. ........+++.++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHS-AASSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHH-HHHHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHH-HHHHHHHhcCCCCCCEEEEeCchHH
Confidence 01122222222223334456789999999999999999999999999544 4455566789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.++...++ +++.|+++++.+. +++..+++.|+++++|++.++|++++.|.+... ....++++||.+++|||+
T Consensus 223 ~~~~~~~~~-~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 223 VAALTTVIF-SAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGAP 295 (517)
T ss_dssp HHHHHHHHH-HHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSSC
T ss_pred HHHHHHHHH-HHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCCC
Confidence 998654444 4559999999854 589999999999999999999999999988643 334578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+++.+. + +++++.||+||+++..+...........+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 296 l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g- 369 (517)
T 3r44_A 296 MPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS- 369 (517)
T ss_dssp CCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE-
T ss_pred CCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC-
Confidence 999999998876 4 78999999999987655443333245678999999999999999999999999 89999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 370 -~~v~~GY~~~p~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~ 445 (517)
T 3r44_A 370 -DILLKEYWNRPEATRDAFD---NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIG 445 (517)
T ss_dssp -TTSCSEETTCHHHHHHTEE---TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCCChhhhHhhhc---CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEe
Confidence 8999999999999988873 689999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
++++..++.++++| ..++...+ .++|+++++++||.||+|+.|+++++||+|+||||+|++|++.+.+++
T Consensus 446 ~~~~~~g~~~~a~v-~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 446 LPDEKWGEIAAAIV-VADQNEVS---EQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp EEETTTEEEEEEEE-EECTTTCC---HHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccccCceEEEEE-ECCCCCCC---HHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 99998888898988 44444443 578999999999999999999999999999999999999999997653
|
| >4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-81 Score=717.10 Aligned_cols=496 Identities=23% Similarity=0.343 Sum_probs=420.3
Q ss_pred HHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCE
Q 004034 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (778)
Q Consensus 204 ~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav 283 (778)
++|+++++ ++||++|+...... ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~a~-~~p~~~a~~~~~~~---~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARLFD-KLDDPHKLAIETAA---GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHHHS-CCSCTTSEEEEETT---CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHH-hCCCCceEEEecCC---CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 56788888 89999998865432 678999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCC
Q 004034 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (778)
Q Consensus 284 ~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (778)
++|++|.++.+++.++++++++++||+++..... +.+..... . . .+..+....
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~---------~~~~~~~~----~-~-~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG---------IAAIAAKV----G-A-TVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT---------THHHHHHH----T-C-EEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH---------HHHHHhhc----C-c-eEEEecCCc------------
Confidence 9999999999999999999999999998765321 11112221 1 1 233222211
Q ss_pred cccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhh
Q 004034 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (778)
Q Consensus 364 ~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g 443 (778)
...+.+.........+.....++|++||+|||||||+||||+++|++++ +........+++.++|++++.+|++|..+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLA-SNSLTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHH-HHHHHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 0011111111122223345678999999999999999999999999954 44555666789999999999999999998
Q ss_pred hhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCH
Q 004034 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (778)
Q Consensus 444 ~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (778)
+...++.+++.|+++++.+. ++++.+++.++ ++|+++++|+++..|++... ....++++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76667889999999999763 58999999998 89999999999999998754 234567899999999999999
Q ss_pred HHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeeeEEEEecCCC
Q 004034 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (778)
Q Consensus 524 ~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p 602 (778)
++.+++.+.++ ++++|.||+||++..+..... ....++++|+|+++++++|+| ++|++++.|+.|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPYD--GDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCSS--SCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCCC--CCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 689999999999876443222 234678899999999999999 789999999999999999 8
Q ss_pred cccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEe
Q 004034 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVE 682 (778)
Q Consensus 603 ~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~ 682 (778)
++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 433 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVP 433 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeE
Confidence 9999999999999988754 78999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 683 HEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 683 ~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
++..++.++++|+.+++...+ .++|+++++++||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 434 ~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 434 HADFGEGVTAVVVRDKGATID---EAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp ETTTEEEEEEEEEECTTCCCC---HHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred chhcCceeEEEEEeCCCCCCC---HHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 998899999999998876555 5789999999999999999999999999999999999999998864
|
| >3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-82 Score=731.86 Aligned_cols=512 Identities=21% Similarity=0.302 Sum_probs=392.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCC--CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
++.++|+++++ ++||++|+++.+.. .+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAAAE-KFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHHHH-HHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 47789999998 89999999988521 1223899999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 279 ~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
++|++++|++|.++.+++.++++++++++||+++... ..+...... ..+..++..+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 222222221 234455544321
Q ss_pred cCCCCcccchhhccCCCCCCCCccccCC-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~ 437 (778)
...+.+.+.......+.....+ +|++||+|||||||+||||+++|++++.+ .......+++.++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~-~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAAN-ALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHH-HHHHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHH-HHHHHHHcCCCCCCEEEEeCc
Confidence 1123333222222222223334 89999999999999999999999995544 445566789999999999999
Q ss_pred cchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEe
Q 004034 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (778)
Q Consensus 438 ~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~g 517 (778)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999988554 7788999999999863 58999999999999999999999999998765432223578999999999
Q ss_pred cCCCCHHHHHHHHHH----hCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCee
Q 004034 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (778)
Q Consensus 518 Ge~l~~~~~~~~~~~----~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~ 592 (778)
||++++++.+++.+. ++..++.+++.||+||++.+++...... ....+++|+|+++++++|+| ++|++++.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999887 6644588999999999998766543322 24568899999999999999 79999999999
Q ss_pred eEEEEecCCCcccccccCChhhhhhhccCCCCC--eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 593 GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G--~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
|||+|+| |++++|||++++.+.+.|+.+.+| ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+|
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 9999999 899999999999999988644466 999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCC--CCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEG--VPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~--~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
|+|.+|+|++++++..++.++|||+++++ ...+ .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++
T Consensus 462 p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 538 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD---EEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538 (549)
T ss_dssp TTEEEEEEECCCC------CEEEEEECSTTTTSCC---HHHHHHHHHTTCC-----CCCCEEEECC--------------
T ss_pred CCeeeEEEEeeEccccCceEEEEEEECCCccCcCC---HHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHH
Confidence 99999999999998889999999999876 2233 578999999999999999999999999999999999999999
Q ss_pred HHhcc
Q 004034 749 IASRQ 753 (778)
Q Consensus 749 ~~~~~ 753 (778)
...++
T Consensus 539 ~~~~~ 543 (549)
T 3g7s_A 539 KEAEG 543 (549)
T ss_dssp -----
T ss_pred Hhhcc
Confidence 87654
|
| >1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-79 Score=705.73 Aligned_cols=492 Identities=22% Similarity=0.251 Sum_probs=411.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~a~-~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 57889999998 899999999752 2578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEE--cCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
|++++|++|.++.+++.+++++++++++|+ ++... . ...... ..++ ++.+++...
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~---~~~~~~----~~~~-~~~~~~~~~------ 134 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------D---AIFQSG----SGAR-IIFLGDLVR------ 134 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------H---HHHHHC----CCCE-EEEGGGTEE------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------h---hhhhcc----ccce-eEEecchhh------
Confidence 999999999999999999999999999999 54321 1 110111 1222 222221100
Q ss_pred cCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCC--CCCcEEEEeC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTA 436 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~--~~~d~~l~~~ 436 (778)
.. +.... ....+.....+++++||+|||||||+||||+++|+++..+ .......+++ .++|++++.+
T Consensus 135 ---~~------~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ 203 (504)
T 1t5h_X 135 ---DG------EPYSY-GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESR-VLFMSTQVGLRHGRHNVVLGLM 203 (504)
T ss_dssp ---TT------EECCC-SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHH-HHHHHHTTCCCSSTTCEEEECS
T ss_pred ---cC------ccccc-CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHH-HHHHHHhhCCCCCCCceEEeec
Confidence 00 00000 0111113456899999999999999999999999996544 4444556777 7899999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
|++|+.++...++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 204 PLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp CTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred chhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 999999876778899999999999864 4899999999999999999999999999876422123346899999999
Q ss_pred ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCC---ceeCCCeee
Q 004034 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIEGECSG 593 (778)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g---~~~~~g~~G 593 (778)
|||++++++.+++.+.++ +.++|.||+||++. +.... ....+++|+|+++++++|+|+++ ++++.|+.|
T Consensus 280 gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~G 351 (504)
T 1t5h_X 280 AGATMPDAVLETVHQHLP---GEKVNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEG 351 (504)
T ss_dssp CCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCE
T ss_pred cCCcCCHHHHHHHHHhcC---cceeeeeccccccc-ccccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcc
Confidence 999999999999999986 68999999999943 22221 23567899999999999999887 999999999
Q ss_pred EEEEe-cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 594 YLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 594 EL~v~-g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
||+|+ | |++++|||++++.+.+.|. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus 352 El~v~gg--~~~~~GY~~~~~~t~~~f~---~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 426 (504)
T 1t5h_X 352 ELIVAAS--DSAFVGYLNQPQATAEKLQ---DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPG 426 (504)
T ss_dssp EEEEECC--TTSCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTT
T ss_pred eEEEeCC--ceeeceecCCchhhhhhhc---CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCC
Confidence 99999 8 8999999999999988872 6899999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|.+|+|++++++..++.++|||+++++...+ .++|++++++ +||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 427 V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 427 VTEVVVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEEEEEEECSSSSEEEEEEEEECTTCCCC---HHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cceEEEEEeecCCCCcEEEEEEEecCCcCcC---HHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9999999999998899999999998765444 5789999998 99999999999999999999999999999999764
|
| >3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-80 Score=723.76 Aligned_cols=506 Identities=21% Similarity=0.310 Sum_probs=422.8
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 28 ~l~~~~~~~a~---pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 28 PLTDILTRHAA---SDSIAVIDG------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp CTTHHHHTTTT---CCSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhC---CCCeEEecC------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 46788998863 999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++++++...... .....+....... ..+..+...+...
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALF----SGDDFLNTFVTEH----SSIRVVQLLNDSG--------- 161 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHHHHHHS----TTCCEEEEETCCS---------
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccc----ccHHHHHHHhhcC----Cccceeeeccccc---------
Confidence 9999999999999999999999999999998764311 1112222222222 3444444443221
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...+.+...............++++|||+|||||||+||||+++|++++. ........+++.++|++++.+|++|
T Consensus 162 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~ 236 (617)
T 3rg2_A 162 ----EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYY-SVRRSVEICQFTQQTRYLCAIPAAH 236 (617)
T ss_dssp ----TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHH-HHHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ----ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHH-HHHHHHHhcCCCCcceEEEeccchh
Confidence 01122222222222233445689999999999999999999999999554 4455666789999999999999988
Q ss_pred hhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.++... .++.+|+.|+++++.+. +++..+++.++++++|++.++|++++.|++.........++++||.+++|||
T Consensus 237 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe 312 (617)
T 3rg2_A 237 NYAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGA 312 (617)
T ss_dssp HHHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESS
T ss_pred hhhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCC
Confidence 876543 68999999999999764 4889999999999999999999999999876432223346889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++++.+++.+.++ ++++|.||+||++...+... ........++|+|+ ++++++|+|++++++|.|+.|||+|+
T Consensus 313 ~l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~ 388 (617)
T 3rg2_A 313 RLSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTR 388 (617)
T ss_dssp CCCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred cCCHHHHHHHHHHhC---CcEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEec
Confidence 999999999999886 78999999999986544221 11112335789997 78899999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |++++||||+++.+.+.|.. +|||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|
T Consensus 389 G--~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 389 G--PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp C--SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred C--ccccchhcCChhhhhhccCC--CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 9 89999999999999998864 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
++.+++..++.++|||+..+... ..++++++++ .||.||+|..|+++++||+|+||||||++|++++....
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~~-----~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPLR-----AVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCCC-----HHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCCC-----HHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 99999888999999999986432 5688999998 69999999999999999999999999999999887553
|
| >4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-80 Score=730.07 Aligned_cols=480 Identities=18% Similarity=0.205 Sum_probs=399.6
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~a~-~~Pd~~Av~~~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEMAA-LHPHREAIRDR------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCCeEEEcC------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 58899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|+||.++.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999776532110 0011 111100
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..............++|++||+|||||||+||||+++|+++.. .... ...+++.++|++++.+|++|
T Consensus 149 -----------~~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~-~~~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 -----------LPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITR-LCLG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp -----------CCCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHH-HHSS-CGGGTTCTTCEEEECSCTTS
T ss_pred -----------CCcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHH-HHHH-HHhhCCCCCCEEEEECccCH
Confidence 0011111222335689999999999999999999999999543 3332 44678899999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ ++.+|.+|+.|+++++.+. ..+++..+++.|+++++|+++++|++++.|++... .++++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~--~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDL--GPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-----DCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCS--SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCcc--ccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-----hhCCCccEEEEEeCc
Confidence 998 5779999999999999743 23589999999999999999999999999987533 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCcCcCCceEEEECCCCce-eCCCeeeEEEE
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~g~~~~Ivd~~g~~-~~~g~~GEL~v 597 (778)
+++++.+++.+.++ +++++|.||+||++++++.... ........++|+|++|++++|+|+++++ ++.|+.|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999988888765 4889999999999976554321 1123456789999999999999999988 78999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCC---C--CeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~---~--G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
+| |++++||||+++.+.+.|.... . +||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~ 443 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPG 443 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTT
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCC
Confidence 99 8999999999999999886421 1 699999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|.+|+|++.+++. ...++++++.... +++++++++||.||+|..|+++++||+|+||||||++|++.+..
T Consensus 444 V~~a~Vv~~~~~~-~~~lv~~~~~~~~---------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 444 ILDCALLVRERNG-VKQLLCAWTGKAD---------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEECTT---------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred ccEEEEEEEeCCC-ceEEEEEEecChH---------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 9999999998874 4455555554321 23445778899999999999999999999999999999998765
Q ss_pred cc
Q 004034 753 QL 754 (778)
Q Consensus 753 ~~ 754 (778)
..
T Consensus 514 ~~ 515 (620)
T 4dg8_A 514 PL 515 (620)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-79 Score=710.17 Aligned_cols=509 Identities=19% Similarity=0.230 Sum_probs=424.3
Q ss_pred HHHH-HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~-~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.+ +|.++++ ++ |++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~~~-~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMERYA-KL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHH-HH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhhhc-cc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4667 7888887 78 999998741 257899999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.++++++++++||+++... ..+......+ +....++.++....
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~------- 159 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKTV----TTIKTIVILDSKVD------- 159 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHHS----TTCCEEEETTCSSC-------
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcCC----CCCCEEEEeCCccc-------
Confidence 999999999999999999999999999999987642 2222322222 22344554432210
Q ss_pred CCCCcccchhhccCCCCCC-CCccccC-----C-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh---hCCCCC
Q 004034 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~-~~~~~~~-----~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~---~~~~~~ 429 (778)
......|.+.+...... .+..... + ++++||+|||||||+||||+++|++++.+... .... +++.++
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 160 --YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH-ARDPIYGNQVSPG 236 (548)
T ss_dssp --BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHH-HTCTTTSCCCCTT
T ss_pred --ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHH-hhchhhccCCCcc
Confidence 00011233332221111 1111222 4 89999999999999999999999996554433 3333 678889
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~ 509 (778)
|++++.+|++|+.++...++.+| .|+++++.+. ++++.+++.|+++++|+++++|++++.|.+... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655567777 9999999853 589999999999999999999999999998754 2345789
Q ss_pred ceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeC
Q 004034 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (778)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~ 588 (778)
+||.+++|||++++++.+++.+.++ ++.+++.||+||++.+++..... ..+.+++|+|+++++++|+| +++++++
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999986 37899999999998766543221 34678999999999999999 6899999
Q ss_pred CCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 589 ~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
.|+.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 461 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL 461 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH
Confidence 99999999999 89999999999999887743 789999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCcccc-EEEECCCCCCCCCCcccHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPD-KIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~-~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
+||+|.+|+|++++++..++.++|+|+++++...+ .++|+++|+++|+.|++|. .|+++++||+|++|||+|++|+
T Consensus 462 ~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~ 538 (548)
T 2d1s_A 462 QHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMT---EKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIR 538 (548)
T ss_dssp TSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHH
T ss_pred hCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCC---HHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHH
Confidence 99999999999999988899999999998765444 5789999999999999999 9999999999999999999999
Q ss_pred HHHhcccCc
Q 004034 748 KIASRQLDE 756 (778)
Q Consensus 748 ~~~~~~~~~ 756 (778)
+++.+.+++
T Consensus 539 ~~~~~~i~~ 547 (548)
T 2d1s_A 539 EILKKPVAK 547 (548)
T ss_dssp HHHHSCC--
T ss_pred HHHhhhhhc
Confidence 999876543
|
| >3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-80 Score=718.10 Aligned_cols=506 Identities=23% Similarity=0.292 Sum_probs=331.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 31 tl~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 31 PLTRILTVGVQ-SHPHSLAIICG------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp CTTHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCceEEEcC------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 36789999999 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++.... +.....+....... .....++.++....
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-------- 167 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEV----FSNNQFIDSLHDVN----LSPEIILMLNHQAT-------- 167 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGG----GSSSHHHHHHHHTT----CCCSEEEEETCCTT--------
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccc----ccHHHHHHHHhhcc----cCcceEEEecCCcc--------
Confidence 999999999999999999999999999999876421 11112222222222 44555555443210
Q ss_pred CCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
...+.+..... ....+.....+++++||+|||||||+||||+++|++++.+ .......+++.++|++++.+|++
T Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 ----DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYS-VRASAEICGLNSNTRLLCALPAP 242 (544)
T ss_dssp ----SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHH-HHHHHHHTTCCTTCEEEECSCTT
T ss_pred ----ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHH-HHHHHHHhCCCCCCeEEEecCcc
Confidence 11111111111 1112224457899999999999999999999999995544 45566678999999999999999
Q ss_pred hhhhhhH-HHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 440 WITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 440 ~~~g~~~-~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
|.++... .++.+|..|+++++.+. +++..+++.|+++++|++.++|++++.|++.... ...++++||.+++||
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG 316 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGG 316 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEES
T ss_pred eEeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcC
Confidence 9887543 68899999999999864 4899999999999999999999999999887542 234678999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCc-CCceEEEECCCCceeCCCeeeEEEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCI 597 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~-~g~~~~Ivd~~g~~~~~g~~GEL~v 597 (778)
|++++++.+++.+.++ +++++.||+||++...... .........++|+|+ ++++++|+|+++++++.|+.|||+|
T Consensus 317 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v 392 (544)
T 3o83_A 317 ASFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRL-DDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLAT 392 (544)
T ss_dssp SCCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHhC---CcEEeeeccccccceeecC-CCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEE
Confidence 9999999999999986 7899999999988544322 111112346899997 8999999999999999999999999
Q ss_pred ecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 598 KSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 598 ~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 393 ~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 468 (544)
T 3o83_A 393 RG--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAA 468 (544)
T ss_dssp EC--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEECTTSCEEEEEEEC-----------------------------
T ss_pred ec--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEE
Confidence 99 89999999999999888754 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
|++++++..++.++|||+.++... ..++|++++++ .||.||+|+.|+++++||+|+||||+|++|++++..
T Consensus 469 vv~~~~~~~g~~~~a~vv~~~~~~----~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 469 LVAIVDEQFGEKSCAFIVSRNPEL----KAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccCCCCCceEEEEEEeCCCCC----CHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999988999999999875321 25678888988 799999999999999999999999999999998763
|
| >2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-78 Score=701.76 Aligned_cols=508 Identities=25% Similarity=0.331 Sum_probs=411.7
Q ss_pred CCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHH
Q 004034 196 GGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAML 275 (778)
Q Consensus 196 ~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~L 275 (778)
...+|++.++|+++++ +||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 20 p~~~~~~~~~l~~~~~--~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET--RAGKTAYIDD------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp --CCCHHHHHHHHTGG--GTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred ccceeHHHHHHHhhhc--cCCceEEEeC------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 3456788999998875 9999999975 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCc-cEEEEEccCCccc
Q 004034 276 ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMT 354 (778)
Q Consensus 276 A~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~ 354 (778)
||+++|++++|+++.++.+++.+++++++++++|+++... ..+.+....+ ... ..++.++....
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~-- 156 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALESA----EHDGCQLIVSQPRES-- 156 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHHCC-------CCEEEEECC-----
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHhhc----cccCceEEEeccccc--
Confidence 9999999999999999999999999999999999987542 2222222211 122 33443332110
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEE
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWC 434 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~ 434 (778)
.. .....|.+.+.......+.....++|++||+|||||||.||||+++|+++...........+++.++|++++
T Consensus 157 ---~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~ 230 (529)
T 2v7b_A 157 ---EP---RLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFS 230 (529)
T ss_dssp ---------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEE
T ss_pred ---cc---ccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEE
Confidence 00 001123333322222223344678999999999999999999999999963444444444578889999999
Q ss_pred eCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEE
Q 004034 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (778)
Q Consensus 435 ~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v 514 (778)
.+|++|+.++...++.+|..|+++++... .+++..+++.|+++++|+++++|+++..|++.... ......+||.+
T Consensus 231 ~~p~~~~~g~~~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~ 305 (529)
T 2v7b_A 231 AAKLFFAYGLGNGLTFPLSVGATAILMAE---RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRIC 305 (529)
T ss_dssp SSCTTSHHHHHHHTHHHHHHTCEEECCCS---CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEE
T ss_pred eecHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEE
Confidence 99999999876778889999999998742 25899999999999999999999999999876432 11112489999
Q ss_pred EEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeE
Q 004034 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGY 594 (778)
Q Consensus 515 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GE 594 (778)
++|||++++++.+++.+.++ +++++.||+||++.+.+....+. ...+++|+|+++++++|+|++|++++.|+.||
T Consensus 306 ~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GE 380 (529)
T 2v7b_A 306 TSAGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAGA--VEYGTTGRPVPGYEIELRDEAGHAVPDGEVGD 380 (529)
T ss_dssp EECSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTTC--CCTTSCCEECTTCEEEEECTTSCBCCTTSCEE
T ss_pred EEcCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccCC--CccCCcccCCCCCEEEEECCCCCCCCCCCccE
Confidence 99999999999999999886 78999999999976554433222 46688999999999999999999999999999
Q ss_pred EEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 595 L~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
|+|+| |++++|||++++.+...|. +|||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|.+||+|.
T Consensus 381 l~v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~ 455 (529)
T 2v7b_A 381 LYIKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVL 455 (529)
T ss_dssp EEEEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEE
T ss_pred EEEec--CCcccccCCChHHHHHhhh---cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcc
Confidence 99999 8999999999999988774 689999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+|+|+++ ++..++.++|+|++.++....+.+.++|+++|+++||.|++|+.|+++++||+|+||||+|++|++
T Consensus 456 ~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 456 EAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 9999999 666788999999998765434445679999999999999999999999999999999999999985
|
| >1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-79 Score=712.61 Aligned_cols=484 Identities=21% Similarity=0.242 Sum_probs=404.1
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-HCCCCeEEEeC------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 47899999998 89999999976 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++... . ....+ .....+..++...
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~---------~----~~~~~----~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNI----QFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTS----CCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchh---------h----hhhhc----cccCceeeecchh---------
Confidence 99999999999999999999999999999986532 1 11111 1111222221110
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
+ .............++|++||+|||||||.||||+++|++++ +........+++.++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGIS-NLKVFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHH-HHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHH-HHHHHHHHhcCCCCCCEEEEeCCccH
Confidence 0 00001111223467899999999999999999999999954 44555666789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ .+.++.+|+.|+++++.+.. ...++..+++.++++++|++.++|+++..|... .+++||.+++|||+
T Consensus 235 ~~~-~~~~~~~l~~G~~~v~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DAS-VWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHLDPE--------RILSIQTLITAGSA 304 (563)
T ss_dssp THH-HHHHHHHHTTTCEEEECCHH-HHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT--------TCCSCSEEEEESSC
T ss_pred HHH-HHHHHHHHHCCCEEEEcChH-hhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc--------ccccccEEEEEEec
Confidence 987 46788999999999997542 124889999999999999999999998776432 46789999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCC-CCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++++++.+. +++++.||+||++.+++..... .......++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999888653 6899999999998765433221 1123567899999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccC----CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~----~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
|++++|||++++.+.+.|.. +.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.+
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~ 457 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 89999999999998888753 234699999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHh
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIAS 751 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~ 751 (778)
|+|++.+++..++.++|||+..... + .++|+++++++||.||+|+.|+++++||+|++|||+|++|++...
T Consensus 458 a~Vv~~~~~~~~~~~~a~vv~~~~~--~---~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 528 (563)
T 1amu_A 458 TAVSVHKDHQEQPYLCAYFVSEKHI--P---LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDL 528 (563)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred EEEEEeecCCCCeEEEEEEEeCCCC--C---HHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCccc
Confidence 9999999988889999999986533 2 578999999999999999999999999999999999999987653
|
| >3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-79 Score=701.13 Aligned_cols=498 Identities=19% Similarity=0.246 Sum_probs=417.5
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~p~~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKWAA-ETPDQTAFVWR------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HCCCceEEEeC------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 5688999998 89999999986 6899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.+++++++++++|++........ . ..++..+...
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~~~---------- 124 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDNLK---------- 124 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHHHH----------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhhhh----------
Confidence 99999999999999999999999999999755321100 0 0011000000
Q ss_pred CCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchh
Q 004034 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~ 441 (778)
... .........+.....+++++||+|||||||.||||+++|++++ .........+++.++|++++.+|++|+
T Consensus 125 ---~~~---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~~~ 197 (512)
T 3fce_A 125 ---DIF---FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLV-SFTKWAVEDFNLQTGQVFLNQAPFSFD 197 (512)
T ss_dssp ---HHH---HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHH-HHHHHHHHHTTCCSSCEEEECSCTTSG
T ss_pred ---hhc---ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHH-HHHHHHHHhcCCCCCCEEEEeCCccHh
Confidence 000 0000111122344678999999999999999999999999955 445556667899999999999999999
Q ss_pred hhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCC
Q 004034 442 TGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPI 521 (778)
Q Consensus 442 ~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l 521 (778)
.+ .+.++.+|+.|+++++.+.. ..+++..+++.++++++|++.++|++++.++.... ....++++||.+++|||++
T Consensus 198 ~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~~l 273 (512)
T 3fce_A 198 LS-VMDIYPSLVTGGTLWAIDKD-MIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGEVL 273 (512)
T ss_dssp GG-HHHHHHHHHTTCEEEECCHH-HHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSSCC
T ss_pred HH-HHHHHHHHhCCCEEEECCHH-HhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecCcC
Confidence 98 46789999999999998641 12378999999999999999999999999887654 2345789999999999999
Q ss_pred CHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 522 NPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 522 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++.+++.+.++ ++++++.||+||++++++...... ......++|+|+++++++|+|++|++++.|+.|||+|+
T Consensus 274 ~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~ 351 (512)
T 3fce_A 274 PNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIV 351 (512)
T ss_dssp CHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEE
T ss_pred CHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEe
Confidence 9999999999985 488999999999987654322111 12356789999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
| |++++|||++++.+.+.|.. +.+|||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 352 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 428 (512)
T 3fce_A 352 G--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAV 428 (512)
T ss_dssp S--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEE
T ss_pred c--cccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 9 89999999999999888742 23569999999999 89999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|++++++..++.++|+|++.++.... .++.++|+++|+++||.|++|+.|+++++||+|++|||+|++|++.+.++
T Consensus 429 vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 429 IVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp EEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-
T ss_pred EEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhc
Confidence 99999988889999999998765433 34578899999999999999999999999999999999999999998754
|
| >3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-80 Score=762.77 Aligned_cols=566 Identities=20% Similarity=0.278 Sum_probs=340.8
Q ss_pred cccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHH
Q 004034 125 DIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYN 204 (778)
Q Consensus 125 ~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~ 204 (778)
.-+|++++.|++|++++..+++.+++.+...+.....+ ..|...... ...+ ...++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~p------------~~~tl~~ 65 (979)
T 3tsy_A 8 HHHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSD----VIFRSKLPD------IYIP------------NHLSLHD 65 (979)
T ss_dssp -------------------------------------C----CCBCCSSCC------CCCC------------TTSCHHH
T ss_pred cccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCC----ceeecCCCC------CCCC------------CCCCHHH
Confidence 45789999999999999999999998887776654321 233222111 0111 1125889
Q ss_pred HHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEE
Q 004034 205 CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVH 284 (778)
Q Consensus 205 ~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~ 284 (778)
+|+++++ ++||++|+++.. .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 66 ~l~~~a~-~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~ 140 (979)
T 3tsy_A 66 YIFQNIS-EFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATA 140 (979)
T ss_dssp HHTTTGG-GTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHH-hCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEE
Confidence 9999998 899999999752 25789999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCc
Q 004034 285 SVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGR 364 (778)
Q Consensus 285 vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~ 364 (778)
+|++|.++.+++.++++++++++||+++...... ...... ..+ .++.++.... ... ...
T Consensus 141 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~-----~~~-~~~~~~~~~~-----~~~-~~~ 199 (979)
T 3tsy_A 141 TAANPFFTPAEIAKQAKASNTKLIITEARYVDKI---------KPLQND-----DGV-VIVCIDDNES-----VPI-PEG 199 (979)
T ss_dssp EEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS---------HHHHHT-----SCC-EEEECCCCTT-----SCC-CTT
T ss_pred EeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH---------HHHhhc-----CCc-eEEEeCCccc-----ccC-Ccc
Confidence 9999999999999999999999999987654321 111111 112 2343333210 000 112
Q ss_pred ccchhhccCCCCC---CCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHH---HhhCCCCCcEEEEeCCc
Q 004034 365 DIWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADC 438 (778)
Q Consensus 365 ~~~~~~~l~~~~~---~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~---~~~~~~~~d~~l~~~~~ 438 (778)
...|.+....... ..+.....++|++||+|||||||+||||+++|++++........ ..+++.++|++++.+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 279 (979)
T 3tsy_A 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPM 279 (979)
T ss_dssp EEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCS
T ss_pred cccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECch
Confidence 2334433332211 22334567899999999999999999999999996655443221 13567889999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++||
T Consensus 280 ~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gg 353 (979)
T 3tsy_A 280 FHIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGA 353 (979)
T ss_dssp SSHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEESS
T ss_pred HHHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEcC
Confidence 9999876778899999999999864 489999999999999999999999999998754 3455789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccC---CCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL---PGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGY 594 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~---~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GE 594 (778)
|++++++.+++.+.++ +++++|.||+||++.+++... ....+...+++|+|+++++++|+|+ ++++++.|+.||
T Consensus 354 ~~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE 431 (979)
T 3tsy_A 354 APLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE 431 (979)
T ss_dssp CCCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEE
T ss_pred CCCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccE
Confidence 9999999999999985 488999999999997654331 1223456789999999999999995 699999999999
Q ss_pred EEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 595 LCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 595 L~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
|+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.
T Consensus 432 l~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~ 507 (979)
T 3tsy_A 432 ICIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDIT 507 (979)
T ss_dssp EEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEESCC-------------------------
T ss_pred EEEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcc
Confidence 99999 89999999999999888754 789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
+|+|++++++..++.++|||+..++...+ .++|+++|+++||.||+|..|+++++||+|+||||+|++|++++.+.
T Consensus 508 ~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 583 (979)
T 3tsy_A 508 DVAVVAMKEEAAGEVPVAFVVKSKDSELS---EDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANG 583 (979)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred eEEEEEecccCCCcEEEEEEEECCCCCCC---HHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence 99999999988899999999987654332 57899999999999999999999999999999999999999988754
|
| >1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=712.26 Aligned_cols=507 Identities=22% Similarity=0.278 Sum_probs=385.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+. +.++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 19 ~l~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 19 NLWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CTHHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-hCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 47789999998 8999999996421 23689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++|+++++++||+++... ..+.+....+ +.++.++.++...
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 153 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEKA--------- 153 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSCC---------
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHHHHHhhC----CCccEEEEecCCC---------
Confidence 99999999999999999999999999999986532 2222222211 3344555443321
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH-HHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~-~~~~~~~~~~d~~l~~~~~~ 439 (778)
......|.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....+++.++|++++.+|++
T Consensus 154 -~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 229 (541)
T 1v25_A 154 -PEGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMF 229 (541)
T ss_dssp -CTTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTT
T ss_pred -CcccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccch
Confidence 00122344443322211 34567899999999999999999999999965443321 22356788999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.++ ..++.+|+.|+++++.+. .+++..+++.|+++++|+++++|++++.|++... ....++++||.+++|||
T Consensus 230 h~~~~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 230 HVNAW-CLPYAATLVGAKQVLPGP---RLDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGS 303 (541)
T ss_dssp SHHHH-THHHHHHHHTCEEEECTT---CCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSS
T ss_pred hhhHH-HHHHHHHhcCceEEeeCC---CCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCC
Confidence 99885 457789999999999753 2589999999999999999999999999987643 22347889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC----C-----CCCCCCcCcCcCCceEEEECCCCceeCC-
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG- 589 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~----~-----~~~~~~~G~p~~g~~~~Ivd~~g~~~~~- 589 (778)
++++++++++ +.++ +++++.||+||++.+++...... . ....+++|+|+++++++|+|++|++++.
T Consensus 304 ~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~ 379 (541)
T 1v25_A 304 AAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKD 379 (541)
T ss_dssp CCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSS
T ss_pred CCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCC
Confidence 9999999999 6665 78999999999997665432211 0 0135789999999999999999999984
Q ss_pred -CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHh
Q 004034 590 -ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668 (778)
Q Consensus 590 -g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~ 668 (778)
++.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.
T Consensus 380 ~~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~ 455 (541)
T 1v25_A 380 GKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM 455 (541)
T ss_dssp SCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC--
T ss_pred CCcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH
Confidence 3689999999 89999999999999888753 789999999999999999999999999999999999999999999
Q ss_pred cCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHh-hcCCCccccEEEECCCCCCCCCCcccHHHHH
Q 004034 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRK-QIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747 (778)
Q Consensus 669 ~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~ 747 (778)
+||+|.+|+|++++++..++.++|||+++ +...+ .++|++++++ +||.|++|+.|+++++||+|+||||+|++|+
T Consensus 456 ~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~---~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~ 531 (541)
T 1v25_A 456 GHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT---PEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALR 531 (541)
T ss_dssp --------CEEEEECSSSSEEEEECC-----------------------CCCTTTSCSBC--------------CCTTHH
T ss_pred hCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC---HHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHH
Confidence 99999999999999998899999999986 22211 4678899999 8999999999999999999999999999999
Q ss_pred HHHhccc
Q 004034 748 KIASRQL 754 (778)
Q Consensus 748 ~~~~~~~ 754 (778)
+.+.+.+
T Consensus 532 ~~~~~~~ 538 (541)
T 1v25_A 532 EQYKNYY 538 (541)
T ss_dssp HHSTTSS
T ss_pred HHHHHhh
Confidence 9887554
|
| >4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-80 Score=718.76 Aligned_cols=485 Identities=22% Similarity=0.288 Sum_probs=321.2
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++++ ++||++|+++. ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~a~-~~pd~~A~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQAA-RAPDAVALLHE------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCCeEEECC------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 68999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++...... .....++ +.+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~-~~~~~--------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLY-VEDEA--------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEE-CCC-----------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCccee-eeccc---------
Confidence 99999999999999999999999999999987643210 1111111 11100
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
..............++|++||+|||||||.||||+++|++++... .. ...+++.++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTY-LG-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHH-SS-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHH-Hh-hhhcCCCCCCEEEEecCccH
Confidence 000111122234678999999999999999999999999954332 22 34567888999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.+ .+.++.+|+.|+++++.+.. .+++..+++.|+++++|++.++|++++.|++... .++++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ--NPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS--SCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc--cCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEeccc
Confidence 765 56889999999999998643 3589999999999999999999999999987643 257899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCC--CCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEe
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLP--GAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~--~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
+++++.+++.+.++ ++++++.||+||++++.+.... ........++|+|+++++++|+|+++++++.|+.|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999998875 4789999999999876553321 1122345679999999999999999999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCC------CCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCc
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQ 672 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~------~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~ 672 (778)
| |++++|||++++.+.+.|..+ .+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~ 493 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPA 493 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC--------------------------
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCC
Confidence 9 899999999999998887532 24699999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 673 CAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 673 V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
|.+|+|++.+++.+++.++|||+.++... ....++|+++|+++||.|++|..|+++++||+|++|||+|++|++.
T Consensus 494 V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~--~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 494 VRQAAVLAQDSRLGDKQLVAYVVAERADA--PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cceEEEEEeeCCCCCeEEEEEEEecCCCC--CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 99999999998888899999999865422 1125789999999999999999999999999999999999999875
|
| >3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-78 Score=695.38 Aligned_cols=495 Identities=17% Similarity=0.217 Sum_probs=420.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~-Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|++. |+++||+|+|+++|++++++++|||+++
T Consensus 3 l~~~l~~~a~-~~p~~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTHAE-TYPQTDAFRSQ------GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCCeEEEcC------CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 5688999998 89999999976 68999999999999999999875 8899999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||+++........ .... .+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~-~~--------------- 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ-TV--------------- 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC-EE---------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc-ee---------------
Confidence 9999999999999999999999999999997653210000 0000 11
Q ss_pred CCCcccchhhccCCC-CCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.+.+..... ....+.....+++++||+|||||||.||||+++|++++ ....+....+++.++|++++.+|++
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 122 ------SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQ-SFTDWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ------EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHH-HHHHHHHHHSTTTTTCEEEECSCTT
T ss_pred ------cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHH-HHHHHHHHhcCCCccceEEEeCCcc
Confidence 111111111 11122334578999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.+ .+.++.+|+.|+++++.+.. ..+++..+++.|+++++|++.++|++++.|+.... .....++++|.+++|||
T Consensus 195 ~~~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLS-VMDLYPCLQSGGTLHCVTKD-AVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHH-HHHHHHHHHTTCEEEECCHH-HHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHH-HHHHHHHHhcCCEEEEcChh-hhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 9988 56789999999999997541 12378999999999999999999999999988754 23456889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEE
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~ 596 (778)
++++++.+++.+.++ ++++++.||+||++++++...... ......++|+|+++++++|+|++|++++.|+.|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999985 489999999999987654321111 123456799999999999999999999999999999
Q ss_pred EecCCCcccccccCChhhhhhhccCCCCC-eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 597 v~g~~p~v~~gY~~~~~~~~~~~~~~~~G-~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
|+| |++++|||++++.+.+.|+...++ ||+|||+|++ +||+|+|+||.||+||++|+||+|.|||++|.+||+|.+
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~ 425 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRS 425 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcce
Confidence 999 899999999999999988753333 7999999999 699999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|+|++++++..++.++|+|+++++.... .++.++|+++|+++||.|++|+.|+++++||+|++|||+|++|++.+..+
T Consensus 426 a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 426 AVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp EEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred EEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 9999999888889999999998765433 35578999999999999999999999999999999999999999998754
|
| >3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-79 Score=702.55 Aligned_cols=493 Identities=23% Similarity=0.293 Sum_probs=319.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 7 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 7 TLADVYRRNAA-LFPDRTAFMVD------GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH-HCCCceEEEEC------CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 47899999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ ..+..++.++...
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~--------- 137 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAGVLPSL----GGVKKAYAIGDGS--------- 137 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHHHGGGC----SSCCEEEESSCCC---------
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHhhhccc----CCceEEEEcCCCC---------
Confidence 99999999999999999999999999999987642 2212221111 3445555443311
Q ss_pred CCCcccchhhccC-CCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 361 QDGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 361 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
..+.+... ......+.....++|++||+|||||||.||||+++|++++ +........+++.++|++++.+|++
T Consensus 138 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 211 (509)
T 3ivr_A 138 -----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLL-IAQSSLVDAWRLTEADVNLGMLPLF 211 (509)
T ss_dssp -----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTT
T ss_pred -----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHH-HHHHHHHHhhCCCCCcEEEEeCCCc
Confidence 11111111 1112223345678999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
|+.++.. ++.+++.|++.++.. .+++..+++.|+++++|++.++|+++..|++... ..++++||.++++|+
T Consensus 212 ~~~g~~~-~~~~~~~~g~~~~~~----~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 212 HVTGLGL-MLTLQQAGGASVIAA----KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA----PAQLASLRAVTGLDT 282 (509)
T ss_dssp SHHHHHH-HHHHHHHTCEEEECS----SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC----GGGGTTCCEEEEECC
T ss_pred chhHHHH-HHHHHHhCCcEEEec----ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc----ccchhhhheecccCC
Confidence 9998544 444555566555554 2599999999999999999999999999998752 346789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+ ++.+++.+.++ +++++|.||+||++++++..... ..+.++|+|+++++++|+|+++++++.|+.|||+|+|
T Consensus 283 ~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g 354 (509)
T 3ivr_A 283 P---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354 (509)
T ss_dssp H---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES
T ss_pred h---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec
Confidence 7 88888888874 48999999999999866543322 2334599999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeec--CCEEEeCceeeCHHHHHHHHhcCCccceEE
Q 004034 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV--DDVINVSGHRIGTAEVESALVSHPQCAEAA 677 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~--dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~ 677 (778)
|++++|||++++.+.+.|. +|||+|||+|++|+||+++|+||. ||+||++|+||+|.|||++|.+||+|.+|+
T Consensus 355 --~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~ 429 (509)
T 3ivr_A 355 --PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAV 429 (509)
T ss_dssp --TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEECTTSCEEEEEEC--------------------------------
T ss_pred --CCccccccCCHHHhHHHhh---cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEE
Confidence 8999999999999988874 689999999999999999999999 999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 678 VVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 678 Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|++++++..++.++++|++.++...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.+.
T Consensus 430 vv~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 430 VIGVPDPQWSEAIKAVCVCKPGESIA---ADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred EEeccccccCcEEEEEEEeCCCCCCC---HHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 99999988899999999987765433 57899999999999999999999999999999999999999998754
|
| >3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-79 Score=709.63 Aligned_cols=511 Identities=18% Similarity=0.226 Sum_probs=323.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|.++++ ++||++|++...+. ..++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~a~-~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKAMK-RYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHHHH-HHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHH-hCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 57899999998 89999997622111 22578999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|+++... ..+......+ +.+..++.++.....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSCB-------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHHhhC----CCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999987642 2333333333 455666655432210
Q ss_pred CCCcccchhhccCCC----C---CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh--hCCCCCcE
Q 004034 361 QDGRDIWWQDVVPKY----P---TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 431 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~----~---~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~~~~~d~ 431 (778)
.....+.+.+... . ...+.....+++++||+|||||||.||||+++|++++.......... +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 0111222221110 0 11112223467899999999999999999999999655544332222 46788999
Q ss_pred EEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCce
Q 004034 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (778)
Q Consensus 432 ~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sL 511 (778)
+++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++... ....++++|
T Consensus 237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 309 (550)
T 3rix_A 237 ILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNL 309 (550)
T ss_dssp EEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTC
T ss_pred EEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccc
Confidence 9999999999984 677889999999999854 589999999999999999999999999998764 345678999
Q ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCC
Q 004034 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGE 590 (778)
Q Consensus 512 r~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g 590 (778)
|.+++|||++++++.+++.+.++. ..++|.||+||++++++..... ..+++++|+|+++++++|+|+ ++++++.|
T Consensus 310 r~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 310 HEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999873 3489999999999876654332 346789999999999999994 79999999
Q ss_pred eeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcC
Q 004034 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 591 ~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+.|||+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+|
T Consensus 386 ~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 386 QRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC--------------------------
T ss_pred CCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 999999999 89999999999999887643 78999999999999999999999999999999999999999999999
Q ss_pred CccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCc-cccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 671 PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 671 p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
|+|.+|+|++++++..++.++++|+++++...+ .++|+++++++|++|+ +|..|+++++||+|+||||+|++|+++
T Consensus 462 p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~---~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 462 PNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcceEEEEEeecCCCCceEEEEEEecCCCCCC---HHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 999999999999998899999999988765433 5789999999999885 455799999999999999999999999
Q ss_pred Hhcc
Q 004034 750 ASRQ 753 (778)
Q Consensus 750 ~~~~ 753 (778)
+.+.
T Consensus 539 ~~~~ 542 (550)
T 3rix_A 539 LIKA 542 (550)
T ss_dssp ----
T ss_pred HHhh
Confidence 8754
|
| >3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-78 Score=694.91 Aligned_cols=498 Identities=18% Similarity=0.223 Sum_probs=407.4
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
.+.++|+++++ ++||++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 5 ~l~~~l~~~a~-~~p~~~a~~~~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 5 DMIDSIEQFAQ-TQADFPVYDCL------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCcceecC------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 46789999998 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++++++++++||++++......... ++.+...
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~---------------------~~~~~~~---------- 126 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS---------------------LVSLSEI---------- 126 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTSE---------------------EEEHHHH----------
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccCc---------------------ccchhhh----------
Confidence 999999999999999999999999999999876542211110 1110000
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHh--hCCCCCcEEEEeCCc
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADC 438 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~--~~~~~~d~~l~~~~~ 438 (778)
...........+.....++|+++|+|||||||.||||+++|++++... .+.... +++.+++++++..|+
T Consensus 127 --------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 197 (521)
T 3l8c_A 127 --------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFT-NWMIEDAAFDVPKQPQMLAQPPY 197 (521)
T ss_dssp --------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHH-HHHHHCTTTCCCSSCEEECCSCT
T ss_pred --------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHH-HHHhhccccCCCCCCeEEecCCc
Confidence 000000011112234578999999999999999999999999965443 333333 678889999999999
Q ss_pred chhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEec
Q 004034 439 GWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 439 ~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gG 518 (778)
+|+.+ ...++.+|..|+++++.+.. ...++..+++.+.++++|++.++|++++.++.... ....++++||.+++||
T Consensus 198 ~~~~~-~~~~~~~l~~G~~~~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG 273 (521)
T 3l8c_A 198 SFDLS-VMYWAPTLALGGTLFALPKE-LVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDG 273 (521)
T ss_dssp TSGGG-HHHHHHHHHTTCEEEECCGG-GTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECS
T ss_pred cHHHH-HHHHHHHHhcCCEEEEcCHH-HhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEec
Confidence 99887 56788899999999987642 23488999999999999999999999999887654 2345789999999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC---CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYL 595 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~---~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL 595 (778)
|++++++.+++.+.++ ++++++.||+||++++++...... .....+++|+|+++++++|+|++|++++.|+.|||
T Consensus 274 ~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl 351 (521)
T 3l8c_A 274 EELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351 (521)
T ss_dssp SCCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEE
T ss_pred ccCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEE
Confidence 9999999999999985 489999999999987654321111 11345689999999999999999999999999999
Q ss_pred EEecCCCcccccccCChhhhhhhccC-CCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~-~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
+|+| |++++|||++++.+.+.|+. +.+|||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.
T Consensus 352 ~v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~ 429 (521)
T 3l8c_A 352 IVTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVA 429 (521)
T ss_dssp EEES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEE
T ss_pred Eecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcc
Confidence 9999 89999999999999988853 23579999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecC-CCCeEEEEEEEEcCCCCC----CHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHH
Q 004034 675 EAAVVGVEHE-VKGQGIYAFVTLVEGVPY----SEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKI 749 (778)
Q Consensus 675 ea~Vv~~~~~-~~~~~lva~Vv~~~~~~~----~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 749 (778)
+|+|++.+++ ..++.++|+|+++++... ..++.++|+++|+++||.|++|..|+++++||+|+||||||++|++.
T Consensus 430 ~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~ 509 (521)
T 3l8c_A 430 SAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINE 509 (521)
T ss_dssp EEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHH
T ss_pred eEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhh
Confidence 9999988765 346889999999876421 12457899999999999999999999999999999999999999999
Q ss_pred Hhcc
Q 004034 750 ASRQ 753 (778)
Q Consensus 750 ~~~~ 753 (778)
+.++
T Consensus 510 ~~~~ 513 (521)
T 3l8c_A 510 VNNR 513 (521)
T ss_dssp TC--
T ss_pred hhcC
Confidence 8754
|
| >3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-78 Score=690.46 Aligned_cols=475 Identities=22% Similarity=0.326 Sum_probs=385.0
Q ss_pred HHHHHHHHhhhccCCC-eEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
++.++|.++++ ++|+ ++|+++. ++++||+||.++++++|+.|+ .|++|+|+++|++++++++|||++
T Consensus 23 tl~~~l~~~a~-~~p~d~~Al~~~------~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~ 90 (505)
T 3nyq_A 23 SLFPALSPAPT-GAPADRPALRFG------ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALL 90 (505)
T ss_dssp -CCTTTSSCCC-SGGGGSEEEEET------TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCCCCeEEEEC------CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHH
Confidence 45677778887 6776 9999986 689999999999999998874 488999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|++|.++.+++.++++++++++||+++..... ... ..+.. +.++..
T Consensus 91 ~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--------------~~~----~~~~~-~~~~~~--------- 142 (505)
T 3nyq_A 91 AGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--------------PAL----GALER-VDVDVR--------- 142 (505)
T ss_dssp HTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--------------GGG----TTSEE-EECCTT---------
T ss_pred hCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--------------hhh----ccccc-cccccc---------
Confidence 99999999999999999999999999999998653210 000 11111 111100
Q ss_pred CCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 004034 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (778)
Q Consensus 360 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~ 439 (778)
.....+.....++|++||+|||||||+||||+++|++++ +........+++.++|++++.+|++
T Consensus 143 ---------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~-~~~~~~~~~~~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 143 ---------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALA-TTLDALADAWQWTGEDVLVQGLPLF 206 (505)
T ss_dssp ---------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHH-HHHHHHHHHHTCCTTCEEEECCCTT
T ss_pred ---------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHH-HHHHHHHHHhCCCCCcEEEEeccHH
Confidence 001112234568999999999999999999999999954 4455566678999999999999999
Q ss_pred hhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCc-ccccCCCCceeEEEEec
Q 004034 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGSVG 518 (778)
Q Consensus 440 ~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~-~~~~~~l~sLr~v~~gG 518 (778)
|..++++.++.+|..|+++++.+. +++..+++.+ ++++|+++++|+++..|++.... ......++++|.+++||
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg 281 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGS 281 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECS
T ss_pred HHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECC
Confidence 999887789999999999999753 4889999999 88999999999999999874321 11223567899999999
Q ss_pred CCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCC---CeeeEE
Q 004034 519 EPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSGYL 595 (778)
Q Consensus 519 e~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~---g~~GEL 595 (778)
|++++++.+++.+.++ ++++|.||+||++++++..... ....+++|+|++|++++|+|++|++++. |+.|||
T Consensus 282 ~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl 356 (505)
T 3nyq_A 282 AALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEI 356 (505)
T ss_dssp SCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEE
T ss_pred CCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCCC--CCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEE
Confidence 9999999999999886 7899999999998765543322 3466889999999999999999999876 899999
Q ss_pred EEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeec-CCEEEeCceeeCHHHHHHHHhcCCccc
Q 004034 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRV-DDVINVSGHRIGTAEVESALVSHPQCA 674 (778)
Q Consensus 596 ~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~rI~~~eIE~~L~~~p~V~ 674 (778)
+|+| |++++|||++++.+.+.|.. +|||+|||+|++|+||+|+|+||+ ||+||++|+||+|.|||++|.+||+|.
T Consensus 357 ~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~ 432 (505)
T 3nyq_A 357 QVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVR 432 (505)
T ss_dssp EEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEE
T ss_pred EEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCcc
Confidence 9999 89999999999999998864 789999999999999999999998 699999999999999999999999999
Q ss_pred eEEEEEEecCCCCeEEEEEEEEcCCC-CCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 675 EAAVVGVEHEVKGQGIYAFVTLVEGV-PYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 675 ea~Vv~~~~~~~~~~lva~Vv~~~~~-~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
+|+|++.+++..++.++|||++.+.. ..+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 433 ~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 433 EAAVTGEPDPDLGERIVAWIVPADPAAPPA---LGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEEEEEEEETTTEEEEEEEEEESSTTSCCC---HHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred EEEEEeeECCCCCcEEEEEEEECCCCCCCC---HHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 99999999998899999999997632 222 578999999999999999999999999999999999999986
|
| >3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-76 Score=678.01 Aligned_cols=495 Identities=20% Similarity=0.249 Sum_probs=382.2
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhC
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~G 281 (778)
+.++|+++++ ++||++|+++. ++++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQAQ-QNGHHIAITDG------QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHHHH-HHTTSEEEECS------SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hcCCceEEEeC------CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 4567888888 89999999976 68999999999999999999987 89999999999999999999999999
Q ss_pred CEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCC
Q 004034 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (778)
Q Consensus 282 av~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (778)
++++|++|.++.+++.++++++++++||+++..............+..... ........ .....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-----~~~~~ 136 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGR-----------DITTNGLL-----DNTMG 136 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeee-----------eccccccc-----ccccc
Confidence 999999999999999999999999999998775432211100000000000 00000000 00000
Q ss_pred CCcccchhhccCCCC-CCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 362 ~~~~~~~~~~l~~~~-~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
............... .........++|++||+|||||||.||||+++|++++.. .......+++.++|++++.+|++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~-~~~~~~~~~~~~~d~~l~~~p~~~ 215 (501)
T 3ipl_A 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVLPIYH 215 (501)
T ss_dssp -------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHH-HHHHHHHTCCCTTCEEEECSCTTS
T ss_pred cccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHH-HHHHHHhhCCCccCEEEEeCcHHH
Confidence 000000000110000 011223457899999999999999999999999996544 445566789999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
+.++. .++.+|+.|+++++.+. ++++.+++.|+++++|+++++|++++.|++.... ...+||.+++|||+
T Consensus 216 ~~g~~-~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 216 ISGLS-VLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGAK 285 (501)
T ss_dssp HHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSSC
T ss_pred HHHHH-HHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCCC
Confidence 99854 57889999999999864 5899999999999999999999999999987542 12389999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecC
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~ 600 (778)
+++++.+++.+ ++ ++++|.||+||+++..+..........++++|+|+++++++|+|++ .|+.|||+|+|
T Consensus 286 l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g- 355 (501)
T 3ipl_A 286 LSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG- 355 (501)
T ss_dssp CCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES-
T ss_pred CCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec-
Confidence 99999999887 44 7899999999998755433222122356789999999999999975 45689999999
Q ss_pred CCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEE
Q 004034 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVG 680 (778)
Q Consensus 601 ~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~ 680 (778)
|++++|||++++.+.. +. +|||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|.+||+|.+|+|++
T Consensus 356 -~~~~~gY~~~~~~t~~--~~--~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~ 430 (501)
T 3ipl_A 356 -ANVMNGYLYPTDLTGT--FE--NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVG 430 (501)
T ss_dssp -TTSCSCCSBSTTCCCS--EE--TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred -cchhhhhCcChhhcch--hc--CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 8999999999987766 33 789999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 681 VEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 681 ~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
.+++..++.++++|+..... + .++|+++|+++||.||+|+.|+++++||+|+||||+|++|++...++
T Consensus 431 ~~~~~~g~~~~a~v~~~~~~--~---~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 431 HPDDTWGQVPKLYFVSESDI--S---KAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEETTTEEEEEEEEEESSCC--C---HHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EecccCCceEEEEEEeCCCC--C---HHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 99998899999999975443 2 57899999999999999999999999999999999999999987654
|
| >3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-75 Score=681.41 Aligned_cols=513 Identities=17% Similarity=0.136 Sum_probs=307.6
Q ss_pred HHHHHHHhhhccCCCeEEEEEEcCC----CCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 202 CYNCLDRNIEAGLGDKVAIYWEAND----PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 202 ~~~~l~~~~~~~~pd~~Al~~~~~~----~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
+.++|+++++ ++||++|+++.+.. ....+++||+||+++++++|+.|++.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~a~-~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETWAK-THPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHHHH-HCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 6788999999 89999999986421 1224899999999999999999999999 7999999999999999999999
Q ss_pred HHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccc
Q 004034 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (778)
Q Consensus 278 l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (778)
+++|++++|++|.++.+++.+++++++++++|+++........ .....++...
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~--------- 152 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTK--------- 152 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETT---------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeeccc---------
Confidence 9999999999999999999999999999999998764321100 0111111110
Q ss_pred ccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH-------hhCCCCCc
Q 004034 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPSD 430 (778)
Q Consensus 358 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~-------~~~~~~~d 430 (778)
...+.+.+.............+++++||+|||||||.||||+++|++++......... .+.+...+
T Consensus 153 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 153 -------NQSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp -------CHHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred -------chhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 0011111111111222234567889999999999999999999999965544332221 24577889
Q ss_pred EEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCc
Q 004034 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (778)
Q Consensus 431 ~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~s 510 (778)
++++..++.|+.+ ...++.++..|+++++.+.. ..++.+++.++++++|++.++|++++.+.... .++++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~------~~~~~ 295 (562)
T 3ite_A 226 KFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP------EDAPH 295 (562)
T ss_dssp EEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG------GGSTT
T ss_pred eEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc------cccCc
Confidence 9999999999886 56788899999999986431 23567889999999999999999988874432 36789
Q ss_pred eeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCC
Q 004034 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG 589 (778)
Q Consensus 511 Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~ 589 (778)
||.+++|||++++++.+++.+.++ +++++.||+||++..++...... ....+++|+|+++++++|+|+ .+++++.
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 999999999999999999887654 78999999999987554432221 235678999999999999996 6788999
Q ss_pred CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhc
Q 004034 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 669 (778)
Q Consensus 590 g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~ 669 (778)
|+.|||+|+| |++++|||++++.+...+ .+.++||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+
T Consensus 372 g~~GEl~v~g--~~v~~GY~~~p~~t~~~~-~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~ 448 (562)
T 3ite_A 372 GMAGELVIEG--SLVANGYLNRPDAKGFCD-INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRS 448 (562)
T ss_dssp TSCEEEEEES--TTSCCEESSCTTCCSEEE-ETTEEEEEEEEEEEECTTSCEEEEEEC----------------------
T ss_pred CCceEEEEec--cccchhhCCCcccccccc-CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHh
Confidence 9999999999 899999999998765433 2223499999999999999999999999999999999999999999999
Q ss_pred C-CccceEEEEEEecCCCCeEEEEEEEEcCCCCCC----------HHHHHHHHHHHHhhcCCCccccEEEECCCCCCC-C
Q 004034 670 H-PQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYS----------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKT-R 737 (778)
Q Consensus 670 ~-p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~----------~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T-~ 737 (778)
| |.|.+++|++.+++..++..+++++...+.... ..+.++|+++|+++||.||+|+.|+++++||+| +
T Consensus 449 ~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~ 528 (562)
T 3ite_A 449 LSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDT 528 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCC
Confidence 8 888899999888887776666555554332211 123468999999999999999999999999998 8
Q ss_pred CCcccHHHHHHHHhccc--CcCCCCCCCCChh
Q 004034 738 SGKIMRRILRKIASRQL--DELGDTSTLADPG 767 (778)
Q Consensus 738 sGKi~R~~L~~~~~~~~--~~~~~~~~~~~~~ 767 (778)
+|||+|++|++++.+.. +-.++.+++.||.
T Consensus 529 ~GKi~r~~L~~~~~~~~~~~~~~~~s~~~~~p 560 (562)
T 3ite_A 529 SAKTDAKALEHMFHTLSLGELFGESSSLVNKP 560 (562)
T ss_dssp --------------------------------
T ss_pred CCcchHHHHHHHHhccCHHHHhccCccccCCC
Confidence 99999999999987542 1134556666653
|
| >3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-74 Score=675.43 Aligned_cols=510 Identities=17% Similarity=0.173 Sum_probs=405.5
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
++.++|+++++ ++||++|+++.+. +.++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~a~-~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLRAL-HSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHHHH-HCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 47899999998 8999999998642 23689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCC---CHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHH-HHHhhcCCCccEEEEEccCCccccc
Q 004034 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAAL-DECAKSGISVDVCLTYENQSAMTRE 356 (778)
Q Consensus 281 Gav~vpl~p~~---~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~~~~~~~~~~~ 356 (778)
|++++|++|.+ +.+++.++++++++++++++..... .+.... ... +....+..+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~-------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---------KFTADELNTN----PKFLKIPAIA-------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHH---------HHCC-----C----CEETTEEEEE--------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHH---------HHHHhhhhhc----ccccccceee--------
Confidence 99999999988 4578999999999999998754310 000000 000 1111111110
Q ss_pred cccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeC
Q 004034 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (778)
Q Consensus 357 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~ 436 (778)
+.+.........+.....++|++||+|||||||.||||+++|++++.+ .......+++.++|++++++
T Consensus 148 -----------~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~~~~~d~~l~~~ 215 (590)
T 3kxw_A 148 -----------LESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDN-LNKIFTSFHMNDETIIFSWL 215 (590)
T ss_dssp -----------GGGCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHH-HHHHHHHTTCCTTCEEEECS
T ss_pred -----------chhccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHH-HHHHHHhhCCCCcCeEEEec
Confidence 000000001112233567899999999999999999999999996544 44556678999999999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCC-cccccCCCCceeEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN-EYVTRYSRKSLRVLG 515 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~-~~~~~~~l~sLr~v~ 515 (778)
|++|++|+...++.+|+.|+++++.+......++..+++.|+++++|++.++|++++.|++... ......++++||.++
T Consensus 216 p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~ 295 (590)
T 3kxw_A 216 PPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAF 295 (590)
T ss_dssp CTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEE
T ss_pred CCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHh
Confidence 9999998666688999999999997542111268899999999999999999999999887532 123456789999999
Q ss_pred EecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCC-------------------------CCCCCCCC
Q 004034 516 SVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGS 567 (778)
Q Consensus 516 ~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~-------------------------~~~~~~~~ 567 (778)
+|||++++++.+++.+.++. .++++++.||+||++++++..... ......++
T Consensus 296 ~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (590)
T 3kxw_A 296 NGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVS 375 (590)
T ss_dssp ECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEEC
T ss_pred hCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEec
Confidence 99999999999999998742 235799999999999876643211 01123468
Q ss_pred cCcCcCCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCC----CCC--eEEcCcEEEEecCCe
Q 004034 568 ATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCSRDKDGY 640 (778)
Q Consensus 568 ~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~----~~G--~yrTGDl~~~~~dG~ 640 (778)
+|+|+++ ++|+|++ +++++.|+.|||+|+| |++++|||++++.+.+.|... .+| ||+|||+|++| ||+
T Consensus 376 ~G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~ 450 (590)
T 3kxw_A 376 SGNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENE 450 (590)
T ss_dssp CCEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTE
T ss_pred cCCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCE
Confidence 8999998 7889976 8999999999999999 899999999999998887541 124 99999999999 999
Q ss_pred EEEEeecCCEEEeCceeeCHHHHHHHH-hcCCccc--eEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh
Q 004034 641 HWLTGRVDDVINVSGHRIGTAEVESAL-VSHPQCA--EAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ 717 (778)
Q Consensus 641 l~~~GR~dd~Iki~G~rI~~~eIE~~L-~~~p~V~--ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~ 717 (778)
|+|+||+||+||++|+||+|.|||++| ..||.|. +|+|++++++. ++.++++|++.++... +...++|+++|++.
T Consensus 451 l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~l~~~l~~~ 528 (590)
T 3kxw_A 451 LYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMD-DVAQDNLFNEIFEL 528 (590)
T ss_dssp EEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCC-HHHHHHHHHHHHHH
T ss_pred EEEEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEecccccc-chhHHHHHHHHHHH
Confidence 999999999999999999999999999 7899999 89999998875 7889999998765422 22356677777777
Q ss_pred cCC-Ccccc-E--EEECCCCCCCCCCcccHHHHHHHHhcc
Q 004034 718 IGA-FAAPD-K--IHWAPGLPKTRSGKIMRRILRKIASRQ 753 (778)
Q Consensus 718 Lp~-~~~P~-~--i~~v~~lP~T~sGKi~R~~L~~~~~~~ 753 (778)
|+. +++|. . ++.+++||+|+||||+|++|++++.+.
T Consensus 529 l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 529 VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 764 66664 3 444589999999999999999998754
|
| >3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-59 Score=535.56 Aligned_cols=406 Identities=19% Similarity=0.210 Sum_probs=314.7
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcC---CCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHH
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEAN---DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~---~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~ 277 (778)
++.++|+++++ ++||++|+++.+. ..+..+++||+||.++++++|++|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~a~-~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRACAR-LQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHHHH-HSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHH-hCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 47899999998 8999999998752 11234899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCEEEeCCC---CCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccc
Q 004034 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (778)
Q Consensus 278 l~~Gav~vpl~p---~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (778)
+++|++++|+++ .++.+++.++|+++++++||+++... ..+.+...... ......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRP--GESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccc--cccccceeEecccc---
Confidence 999999999999 88899999999999999999987642 11111110000 00011222222110
Q ss_pred cccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCC------
Q 004034 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (778)
Q Consensus 355 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~------ 428 (778)
.......+.....+++++||+|||||||+||||+++|++++.+. ......+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNF-EQLMSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHH-HHHHHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHH-HHHHHHhccccccCCCC
Confidence 01111223345678999999999999999999999999965544 44455677776
Q ss_pred CcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcC--CcccccC
Q 004034 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (778)
Q Consensus 429 ~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~--~~~~~~~ 506 (778)
+|++++.+|++|++|+++.++.+|+.|+++++.+.....+++..+++.++++++| +.++|+++..++... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 8999999999999998888999999999999975321113789999999999999 788888888777532 1123456
Q ss_pred CCCceeEEEEecCCCCHHHHHHHHHHhCC---CCcceecccccccccceecccCCCCC----------------------
Q 004034 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (778)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~~~~~~~~~~g~---~~~~i~~~YG~TE~g~~~~~~~~~~~---------------------- 561 (778)
++++||.+++|||++++++++++.+.++. .++.+++.||+||++.+++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 78999999999999999999999998852 24679999999999987665433210
Q ss_pred -CCCCCCcCcCcCCceEEEECCC-CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccC---------CCCCeEEcC
Q 004034 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK---------PFPGYYFTG 630 (778)
Q Consensus 562 -~~~~~~~G~p~~g~~~~Ivd~~-g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~---------~~~G~yrTG 630 (778)
....+++|+|++ ++++|+|++ |++++.|+.|||+|+| |++++|||++++.+.+.|.. +.+||||||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 123468999999 999999976 7999999999999999 89999999999999988841 135699999
Q ss_pred cEEEEecCCeEEEEee
Q 004034 631 DGCSRDKDGYHWLTGR 646 (778)
Q Consensus 631 Dl~~~~~dG~l~~~GR 646 (778)
|+|++| ||+|+|+||
T Consensus 466 Dlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 466 DSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEE-TTEEEECC-
T ss_pred ceeeEE-CCEEEEeCC
Confidence 999997 999999998
|
| >4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=472.58 Aligned_cols=315 Identities=20% Similarity=0.216 Sum_probs=266.2
Q ss_pred CCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCC
Q 004034 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (778)
Q Consensus 386 ~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~ 465 (778)
.+|+|||+|||||||+||||+++|++++ +........+++.++|++++.+|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~-~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLA-ASAAMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHH-HHHHHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHH-HHHHHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 4789999999999999999999999954 445556677999999999999999999984 5678899999999998642
Q ss_pred CCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccc
Q 004034 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (778)
Q Consensus 466 ~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG 545 (778)
.+ .++.|+++++|++.++|++++.|++.... ..++++||.+++|||++++++.+++.+. + +++++.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---~~~l~~lr~v~~gG~~l~~~~~~~~~~~-~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSAT---SGQVDRLGKVLLGGAPVNHALAMQISDL-A---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTTT---GGGGGGGCSEEECSSCCCHHHHHHHHTC-S---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhccccc---cccCCcceEEEEcccCCCchheeccccc-C---ceEEeccc
Confidence 12 35678999999999999999999987642 3468999999999999999999998763 3 78999999
Q ss_pred cccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCC
Q 004034 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (778)
Q Consensus 546 ~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G 625 (778)
+||+++.++..... ....+.+|.+.||+++.+.+ .|||+++|++ . .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g~~--~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISGAV--T------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEESGG--G------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEeccc--c------------------cCc
Confidence 99998866554332 23567889999998877643 5999999831 1 267
Q ss_pred eEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHH---hcCCccceEEEE-EEecCCCCeEEEEEEEEcCCCC
Q 004034 626 YYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESAL---VSHPQCAEAAVV-GVEHEVKGQGIYAFVTLVEGVP 701 (778)
Q Consensus 626 ~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L---~~~p~V~ea~Vv-~~~~~~~~~~lva~Vv~~~~~~ 701 (778)
||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++| .+||+|.+|+|+ +.+|+..++.++|+|+....
T Consensus 229 ~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-- 305 (358)
T 4gs5_A 229 TVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-- 305 (358)
T ss_dssp CEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--
T ss_pred ceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--
Confidence 99999999999998 667799999999999999999999877 468999999886 66788888999999876432
Q ss_pred CCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 702 YSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 702 ~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
+...++|+++|+++||.||+|+.|+++++||+|++|||+|++|++.+.+
T Consensus 306 --~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 306 --EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp --HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred --CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4456899999999999999999999999999999999999999998764
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=445.35 Aligned_cols=332 Identities=19% Similarity=0.185 Sum_probs=267.8
Q ss_pred ccCC-CCcEEEEeCCCCCCCCceEEEccchHHHHHHHH--HHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEE
Q 004034 383 WVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 383 ~~~~-~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlv 459 (778)
..++ +++++|+|||||||.||||+++|+++....... ....+++.++|++++..|++|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 889999999999999999999999964433222 2234688999999999999877776777889999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcc
Q 004034 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (778)
Q Consensus 460 l~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (778)
+.+. .+++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.+| ++
T Consensus 161 ~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 233 (436)
T 3qov_A 161 PAAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VK 233 (436)
T ss_dssp CCCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---cc
Confidence 8754 3889999999999999999999999999876432122224789999999999999999999999986 78
Q ss_pred eecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEEC-CCCceeCCCeeeEEEEecCCCcccccccCChhhhhh
Q 004034 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (778)
Q Consensus 540 i~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd-~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~ 617 (778)
++|.||+||+++. +..... .....+.|.+++.++|+| ++|++++.|+.|||+|+|+ . ..
T Consensus 234 v~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~--~------------~~ 294 (436)
T 3qov_A 234 AYNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL--D------------RE 294 (436)
T ss_dssp EEEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES--S------------CC
T ss_pred EEecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc--C------------cC
Confidence 9999999999654 332221 122367788899999999 6899999999999999992 1 11
Q ss_pred hccCCCCCeEEcCcEEEEecCC------e---EEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCe
Q 004034 618 TYFKPFPGYYFTGDGCSRDKDG------Y---HWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQ 688 (778)
Q Consensus 618 ~~~~~~~G~yrTGDl~~~~~dG------~---l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~ 688 (778)
. + ..+||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++
T Consensus 295 ~-~--~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~ 371 (436)
T 3qov_A 295 M-M--PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQD 371 (436)
T ss_dssp S-S--CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEE
T ss_pred C-c--eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCc
Confidence 1 1 25799999999999998 5 699999999999999999999999999999999999999999888889
Q ss_pred EEEEEEEEcCCCCCC-HHHHHHHHHHHHhhcCCC-ccccEEEECC--CCCCCCCCcccHHH
Q 004034 689 GIYAFVTLVEGVPYS-EELRKSLVLAVRKQIGAF-AAPDKIHWAP--GLPKTRSGKIMRRI 745 (778)
Q Consensus 689 ~lva~Vv~~~~~~~~-~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~--~lP~T~sGKi~R~~ 745 (778)
.++|+|+++ +...+ ....++++++|++.|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 999999998 54332 222466777777778777 8999999999 999999 9999853
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=438.36 Aligned_cols=336 Identities=20% Similarity=0.180 Sum_probs=270.4
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
..+++++++|+|||||||+||||+++|+++...... .....+++.++|++++..|+++..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 356789999999999999999999999995443322 122357889999999999996444445667889999999988
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i 540 (778)
.+. .+++.+++.|+++++|++.++|+++..|++..........+++||.+++|||++++++.+++.+.+| +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 754 3899999999999999999999999999875321111112479999999999999999999999886 789
Q ss_pred ecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 541 ~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
++.||+||+++. +...... .....+.|.+++.++|+|+ +|++++.|+.|||+|+|. . ...
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~--t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL--T------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC--C------------ccc
Confidence 999999998543 3322221 1112455778999999995 699999999999999982 1 111
Q ss_pred ccCCCCCeEEcCcEEEEecC-CeE-----EEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEE
Q 004034 619 YFKPFPGYYFTGDGCSRDKD-GYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~d-G~l-----~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 692 (778)
+ ..+||+|||+|++++| |++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+++
T Consensus 303 ~---p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a 379 (443)
T 2y4o_A 303 M---PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL 379 (443)
T ss_dssp S---CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEE
T ss_pred C---hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEE
Confidence 1 2579999999999999 987 899999999999999999999999999999999999999988777889999
Q ss_pred EEEEcC--CCCCCHHHHHHHHHHHHhhcCCCc-cccEEEEC--CCCCCCCCCcccHHHH
Q 004034 693 FVTLVE--GVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRIL 746 (778)
Q Consensus 693 ~Vv~~~--~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~T~sGKi~R~~L 746 (778)
+|++.+ +........++|+++|+++|+.|+ +|..|.++ ++||+|++||++|+..
T Consensus 380 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 380 AVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 999875 322122235778888999998875 89888887 5999999999999753
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-48 Score=433.28 Aligned_cols=334 Identities=19% Similarity=0.132 Sum_probs=269.7
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH--HHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT--TFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~--~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl 460 (778)
..+++++++|+|||||||.||||+++|+++...... .....+++.++|++++..|+++..+....++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 346789999999999999999999999995543322 122357889999999999985433335567889999999987
Q ss_pred EcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcce
Q 004034 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (778)
Q Consensus 461 ~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i 540 (778)
.+. .+++.+++.|+++++|+++++|+++..|.+..........+++||.+++|||++++++.+++.+.+| +++
T Consensus 166 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 238 (437)
T 2y27_A 166 FGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---IDA 238 (437)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SEE
T ss_pred CCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cCE
Confidence 654 3899999999999999999999999999875321111112478999999999999999999999886 789
Q ss_pred ecccccccccce-ecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeeeEEEEecCCCcccccccCChhhhhhh
Q 004034 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (778)
Q Consensus 541 ~~~YG~TE~g~~-~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~ 618 (778)
++.||+||+++. +...... .....+.|.+++.++|+|+ +|++++.|+.|||+|+|. . .+.
T Consensus 239 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~--t------------~~~ 300 (437)
T 2y27_A 239 VDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL--T------------KEA 300 (437)
T ss_dssp EEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES--S------------CSS
T ss_pred EecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC--C------------cCC
Confidence 999999998543 3322221 1112566778999999995 699999999999999982 1 111
Q ss_pred ccCCCCCeEEcCcEEEEec-CCeE-----EEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEE
Q 004034 619 YFKPFPGYYFTGDGCSRDK-DGYH-----WLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYA 692 (778)
Q Consensus 619 ~~~~~~G~yrTGDl~~~~~-dG~l-----~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva 692 (778)
+ ..+||+|||+|++++ ||++ +|+||.||+||++|++|+|.|||++|.+||+|.+++|++++++..++.++|
T Consensus 301 ~---~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 301 L---PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp S---CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred c---hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 1 257999999999999 6986 899999999999999999999999999999999999999988777889999
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhhcCCCc-cccEEEEC--CCCCCCCCCcccHHH
Q 004034 693 FVTLVEGVPYSEELRKSLVLAVRKQIGAFA-APDKIHWA--PGLPKTRSGKIMRRI 745 (778)
Q Consensus 693 ~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~T~sGKi~R~~ 745 (778)
+|++.++........++|+++|+++|+.|+ +|..|.++ ++||+|+ ||++|+.
T Consensus 378 ~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 999876643222235778889999999884 89888888 5999999 9999864
|
| >3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-30 Score=281.33 Aligned_cols=238 Identities=15% Similarity=0.087 Sum_probs=175.9
Q ss_pred ccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHH--HHHhhCCCCCcEEEEeCCc-chhhhhhHHHHHHHhcCcEEE
Q 004034 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 383 ~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~--~~~~~~~~~~d~~l~~~~~-~~~~g~~~~i~~~L~~G~tlv 459 (778)
.++++++++|+|||||||+||||+++|+++....... ....+++.++|++++..|+ .|+.+. ...+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 3478999999999999999999999999955443321 2235677889999999999 787774 45566789999 55
Q ss_pred EEcCCCCCCChh-----------------------HHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 460 l~~~~~~~~~~~-----------------------~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
+... ++|. .+++.|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5432 3666 78889999999999999999999987632 22345689999999
Q ss_pred ecCCCCHHHHHHHH-HHhCCCCcceecccccccccceecccCCCCCCCCCC-CcCcC------cCCceEEEECC-CCcee
Q 004034 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (778)
Q Consensus 517 gGe~l~~~~~~~~~-~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~-~~G~p------~~g~~~~Ivd~-~g~~~ 587 (778)
|||++++++.+++. +.++ +++++|.||+||+++++.. .+. ++|+| +++++++|+|+ +|+++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~--------~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRS--------LLITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEE--------CCBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceec--------cccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8884 4899999999999865531 122 48999 99999999998 99999
Q ss_pred CCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecC--C-------eEEEEeecCCEEEeCce
Q 004034 588 EGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD--G-------YHWLTGRVDDVINVSGH 656 (778)
Q Consensus 588 ~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~d--G-------~l~~~GR~dd~Iki~G~ 656 (778)
+.|+.|||+|++. .+ ..++ -.|+|||++++.+. | .+..++|.|+++||.|.
T Consensus 309 p~G~~GEl~vt~l----~~----------~~~l----~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYGERGNVIVTHL----SP----------WAFY----PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTTCEEEEEEEEE----ET----------TEEE----EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCCCceEEEEEEc----Cc----------cccc----ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9999999999981 11 1111 15999999998653 3 46778899999999885
|
| >3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=138.26 Aligned_cols=95 Identities=19% Similarity=0.294 Sum_probs=75.1
Q ss_pred eecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCH----HHHHHHHHHHHhhcCC
Q 004034 645 GRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSE----ELRKSLVLAVRKQIGA 720 (778)
Q Consensus 645 GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~----~l~~~l~~~l~~~Lp~ 720 (778)
.|+||+||++|++|+|.|||++|.+||+|.+++|++++++.+++.+.++|+..++...+. ++.++|++.+++.+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g- 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL- 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC-
Confidence 489999999999999999999999999999999999999988999999999987765543 344556666666553
Q ss_pred CccccEEEEC--CCCCCCCCCcccH
Q 004034 721 FAAPDKIHWA--PGLPKTRSGKIMR 743 (778)
Q Consensus 721 ~~~P~~i~~v--~~lP~T~sGKi~R 743 (778)
+|..+.++ ++||+| +||++|
T Consensus 80 --v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 --VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp --SCCEEEEECTTCSCCC----CCC
T ss_pred --CccceEEEcCCeecCC-CCCcch
Confidence 34455565 489999 799987
|
| >4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.8e-08 Score=109.52 Aligned_cols=133 Identities=13% Similarity=0.092 Sum_probs=84.7
Q ss_pred CCc---eeEEEEecCCCCHHHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCc-CcCCc-eEEEEC
Q 004034 508 RKS---LRVLGSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGV-QPVIVD 581 (778)
Q Consensus 508 l~s---Lr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~g~~~~~~~~~~~~~~~~~~G~-p~~g~-~~~Ivd 581 (778)
++. +..++.||- ..-...++..+| +.+++ ..|++||. .+.+ +.... ..+...+. .+++. -.+.++
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi-~~~p~--~~~~~~~~~L~~~~~ffEFip 366 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCN--DLPLVSTTYGSSET-TFGI-NLDPL--CKPEDVSYTFMPNMSYFEFIP 366 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHT--TCCEECCEEECSSC-EEEE-CSCTT--SCGGGCCEEECTTSSEEEEEE
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcC--CCccccCccccccc-eeee-ccCCC--CCcccCceeecCCcEEEEEEe
Confidence 466 555555662 223345555565 37777 99999995 3332 21111 01111222 22332 223342
Q ss_pred --CC-------CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEec----CCeEEEEeecC
Q 004034 582 --EK-------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYHWLTGRVD 648 (778)
Q Consensus 582 --~~-------g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~----dG~l~~~GR~d 648 (778)
+. ...+..|+.+||+|+.. . |.| -|++||++++.. ...+.|+||.+
T Consensus 367 ~~~~~~~~~v~l~eVe~G~~YelViTt~-~----GL~----------------RYr~GD~v~v~~f~~~~p~i~f~gR~~ 425 (581)
T 4eql_A 367 MDGGDKNDVVDLEDVKLGCTYEPVVTNF-A----GLY----------------RMRVGDIVLVTGFYNNAPQFKFVRREN 425 (581)
T ss_dssp CSTTCCSSCEEGGGCCTTCEEEEEEECS-S----SCC----------------SEECCEEEEEEEEETTEEEEEEEEETT
T ss_pred ccccCCCcEeCHHHcCCCceEEEEEeec-c----cee----------------eEEcCCEEEEcccCCCCcEEEEEEecC
Confidence 21 13467899999999981 1 111 399999999986 46899999999
Q ss_pred CEEEeCceeeCHHHHHHHHhcC
Q 004034 649 DVINVSGHRIGTAEVESALVSH 670 (778)
Q Consensus 649 d~Iki~G~rI~~~eIE~~L~~~ 670 (778)
+++++.|.++...+||++|.+.
T Consensus 426 ~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 426 VVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp EEECSSSCCEEHHHHHHHHHHC
T ss_pred CEEEeeeeECCHHHHHHHHHHH
Confidence 9999999999999999999854
|
| >4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.2e-07 Score=103.18 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=65.3
Q ss_pred ceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEec----CCeEEEEeecCCEEEeCceeeCH
Q 004034 585 VEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDK----DGYHWLTGRVDDVINVSGHRIGT 660 (778)
Q Consensus 585 ~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G~rI~~ 660 (778)
.+++.|+.+||+|+.. .|+| -|++||+++++. ...|.|+||.+++|++.|.+|..
T Consensus 391 ~eVe~G~~YelViTt~-----~GL~----------------RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~ 449 (609)
T 4b2g_A 391 AHVEVGKEYELVITTY-----AGLY----------------RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDE 449 (609)
T ss_dssp GGCCTTCEEEEEEECT-----TSCC----------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred hHcCCCCeEEEehhhh-----hhhh----------------heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCH
Confidence 3577999999999871 1222 299999999984 46899999999999999999999
Q ss_pred HHHHHHHhcC------C--ccceEEEEEEecCCCCeEEEEEEEEc
Q 004034 661 AEVESALVSH------P--QCAEAAVVGVEHEVKGQGIYAFVTLV 697 (778)
Q Consensus 661 ~eIE~~L~~~------p--~V~ea~Vv~~~~~~~~~~lva~Vv~~ 697 (778)
.+||++|.+. . .|.|-.+..- .......-+.|+.+.
T Consensus 450 ~~v~~av~~a~~~l~~~g~~l~eft~~~d-~~~~p~Hyv~~wEl~ 493 (609)
T 4b2g_A 450 AELQKAVDNASKLLREVNTSVVEYTSFAD-TKTIPGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHHHHHHGGGGTTEEEEEEEEEEE-CSSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCeEEEEEEecC-CCCCCCcEEEEEEEe
Confidence 9999999832 2 3455555422 222223455566654
|
| >4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.4e-07 Score=100.33 Aligned_cols=161 Identities=11% Similarity=0.023 Sum_probs=95.3
Q ss_pred CCceeEE--EEecCCCCHHHHHHHHHHhCCCCccee-cccccccccceecccCCCCCCCCCCCcCc-CcCCce-EEEE--
Q 004034 508 RKSLRVL--GSVGEPINPSAWRWFFNVVGDSRCPIS-DTWWQTETGGFMITPLPGAWPQKPGSATF-PFFGVQ-PVIV-- 580 (778)
Q Consensus 508 l~sLr~v--~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~g~~~~~~~~~~~~~~~~~~G~-p~~g~~-~~Iv-- 580 (778)
++.|+.| +.+|.. ..-...+...+| +.+++ ..|++||. .+.+ +.... ..++..+. .+++.. .+.+
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g--~~p~~~~~Y~ASEg-~~gi-~~~p~--~~~~~~~~~L~p~~~ffEFiP~ 372 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAG--DLPLVSHDYGSSEG-WIAA-NVTPR--LSPEEATFAVIPNLGYFEFLPV 372 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHT--TSCEEECCEEETTE-EEEE-CCCTT--SCTTTCCEEECTTSCEEEEEEC
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcC--CCccccCceeccce-eeee-ecCCC--CCccccceeecCCcEEEEEEec
Confidence 5677533 344422 222345555565 36777 99999995 3333 22111 11111222 233321 1223
Q ss_pred CCC---------CceeCCCeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecC----CeEEEEeec
Q 004034 581 DEK---------GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKD----GYHWLTGRV 647 (778)
Q Consensus 581 d~~---------g~~~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~d----G~l~~~GR~ 647 (778)
|+. ...++.|+.+||+|+.. + |.| -|++||++++..- ..+.|+||.
T Consensus 373 ~~~~~~~~~~v~l~eve~G~~YelviTt~--~---GL~----------------RYr~GD~v~v~g~~~~~p~~~~~gR~ 431 (581)
T 4epl_A 373 SETGEGEEKPVGLTQVKIGEEYEVVITNY--A---GLY----------------RYRLGDVVKVIGFYNNTPQLKFICRR 431 (581)
T ss_dssp -------CCCEEGGGCCTTCEEEEEEEST--T---SCS----------------SEEEEEEEEEEEEETTEEEEEEEEET
T ss_pred ccccCCCCceeeHHHcCCCCeEEEEEeec--c---cee----------------eEEcCCEEEEecccCCCcEEEEEeec
Confidence 221 13477899999999981 1 111 3999999999753 579999999
Q ss_pred CCEEEeCceeeCHHHHHHHHhc------CC--ccceEEEEEEecCCCCeEEEEEEEEcC
Q 004034 648 DDVINVSGHRIGTAEVESALVS------HP--QCAEAAVVGVEHEVKGQGIYAFVTLVE 698 (778)
Q Consensus 648 dd~Iki~G~rI~~~eIE~~L~~------~p--~V~ea~Vv~~~~~~~~~~lva~Vv~~~ 698 (778)
++++++.|.++...+||++|.+ .. .|.|-.+... .......-+.|+.+..
T Consensus 432 ~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d-~~~~p~hyv~~wE~~~ 489 (581)
T 4epl_A 432 NLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID-VSTDPGHYAIFWEISG 489 (581)
T ss_dssp TCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE-CSSSSCEEEEEEEESS
T ss_pred CCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC-CCCCCCcEEEEEeecC
Confidence 9999999999999999999974 22 3666665542 2222234555667653
|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=92.37 E-value=0.0088 Score=67.60 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=51.9
Q ss_pred CCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHH
Q 004034 104 AGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADI 163 (778)
Q Consensus 104 ~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~ 163 (778)
.++|||.+.+. +.++.+...++|++++|+++++++++++|..+|++++++|++.++++
T Consensus 460 ~~~~~L~l~~~--~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l 517 (520)
T 2jgp_A 460 HAKFDLTFSAT--EEREEMTIGVEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEI 517 (520)
T ss_dssp BCSSSEEEEEE--ECSSCEEEEEEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGC
T ss_pred ceeeeeEEEEE--ECCCeEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhc
Confidence 68999998877 45577888999999999999999999999999999999999887665
|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
Probab=89.23 E-value=0.033 Score=62.33 Aligned_cols=59 Identities=10% Similarity=-0.107 Sum_probs=43.1
Q ss_pred CCCccc---hhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHH
Q 004034 103 GAGKIS---RLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (778)
Q Consensus 103 ~~akfd---l~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~ 164 (778)
++++|| |.+.+. +.++.+...+.|++++| ++++.+++++|..+|++++++|++.++++.
T Consensus 408 ~~~~~~~~~l~l~v~--~~~~~l~~~~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVG--ELGEDMVIVLDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEE--EETTEEEEEEEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEE--EeCCeEEEEEEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 346788 877766 44677889999999999 999999999999999999999999888774
|
| >2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis} | Back alignment and structure |
|---|
Probab=86.01 E-value=0.073 Score=58.84 Aligned_cols=56 Identities=5% Similarity=-0.080 Sum_probs=47.5
Q ss_pred CCCccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHH
Q 004034 103 GAGKISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFW 160 (778)
Q Consensus 103 ~~akfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~ 160 (778)
..++|||.+.+. +.++.+...++|++++|+++++.+++++|.++|++++++|+..-
T Consensus 406 ~~~~~~l~~~~~--~~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~~ 461 (466)
T 2xhg_A 406 SEVYTALNITGL--IEGGELVLTFSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQSH 461 (466)
T ss_dssp SBCCCSEEEEEE--EETTEEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEE--EECCEEEEEEEEChhhCCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345788887765 44567888999999999999999999999999999999997643
|
| >2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* | Back alignment and structure |
|---|
Probab=85.79 E-value=3.5 Score=44.75 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=75.5
Q ss_pred CCCeEEEE-EEcCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCC
Q 004034 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~ 288 (778)
.++.+|.+ +....+|. ...+|.+.+...+..++..+...|+.++|++..++|.. ...+..+++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 45666644 33222222 34689999998888888888889999999999998863 333456788899999988765
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ ...+++...+++.++.+++..+..
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~ 192 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSY 192 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHH
Confidence 5 588999999999999999987653
|
| >2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} | Back alignment and structure |
|---|
Probab=85.43 E-value=3.8 Score=44.63 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCCeEEE-EEEcCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCC
Q 004034 214 LGDKVAI-YWEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (778)
Q Consensus 214 ~pd~~Al-~~~~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~ 288 (778)
.++.+|. ++....+|. .-.+|.+.+...+..++..+...|+.++|++..+++.+ ...+..+++++..|+..+++.
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 3455553 344333232 34689999998888888888889999999999998864 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 289 AGFSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 289 p~~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
+ ...+++...+++.++.+++..+..
T Consensus 170 ~-~~~~~~~~~i~~~~~t~l~~~Ps~ 194 (443)
T 2y4o_A 170 G-GQTEKQVQLIRDFEPKIILVTPSY 194 (443)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHH
T ss_pred C-CCHHHHHHHHHHhCCcEEEECHHH
Confidence 5 488999999999999999987653
|
| >3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* | Back alignment and structure |
|---|
Probab=83.81 E-value=4.2 Score=44.15 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=75.5
Q ss_pred CeEEEEEE-cCCCCc--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCC--hHHHHHHHHHHHhCCEEEeCCCC
Q 004034 216 DKVAIYWE-ANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (778)
Q Consensus 216 d~~Al~~~-~~~~~~--~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s--~e~vva~LA~l~~Gav~vpl~p~ 290 (778)
+.+|.+.. ...+|. .-.+|.+.+...+..++..+...|+.++|++..++|-+ ...+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 66675543 222222 34689999999999999888889999999999998753 4445567888999998887655
Q ss_pred CCHHHHHHHHHhcCCcEEEEcCCc
Q 004034 291 FSSDSLAQRIMDCKPKVVITSNAV 314 (778)
Q Consensus 291 ~~~~~l~~~l~~~~~~~iit~~~~ 314 (778)
..++++...+++.++.+++..+..
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~ 188 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSY 188 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHH
Confidence 477899999999999999877643
|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
Probab=80.02 E-value=0.16 Score=55.58 Aligned_cols=55 Identities=5% Similarity=-0.036 Sum_probs=48.1
Q ss_pred chhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhC---HHHHHHHH
Q 004034 108 SRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (778)
Q Consensus 108 dl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~~ 163 (778)
||.+.+... .++.+...++|++++|+++++.+++++|..+|++++++ |+++++++
T Consensus 361 ~l~l~v~~~-~~~~l~~~~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 361 GINFTFRGS-PQHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp SEEEEEEEC-TTSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred ceEEEEEec-CCCcEEEEEEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 777776521 24667889999999999999999999999999999999 99999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 778 | ||||
| d1pg4a_ | 643 | e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en | 0.0 | |
| d1ry2a_ | 640 | e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast | 0.0 | |
| d1v25a_ | 534 | e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0 | 1e-102 | |
| d1lcia_ | 541 | e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali | 2e-91 | |
| d1amua_ | 514 | e.23.1.1 (A:) Phenylalanine activating domain of g | 3e-88 | |
| d1mdba_ | 536 | e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B | 4e-87 | |
| d3cw9a1 | 503 | e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc | 4e-82 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Score = 672 bits (1735), Expect = 0.0
Identities = 345/646 (53%), Positives = 451/646 (69%), Gaps = 11/646 (1%)
Query: 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGN 188
+ + + L+ +P++Y YK+S+ DP FW + W + Q+V + + GN
Sbjct: 5 IPANIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPY-QKVKNTSFA--PGN 60
Query: 189 VKIEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANY 248
V I+W++ G N+ NCLDR+++ GD+ AI WE +D ++Y +L + VC+ AN
Sbjct: 61 VSIKWYEDGTLNLAANCLDRHLQEN-GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANT 119
Query: 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVV 308
L D+G+KKGD V IY+PM+ E +AMLACARIGAVHSV+F GFS +++A I+D ++V
Sbjct: 120 LLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 179
Query: 309 ITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWW 368
IT++ R ++I LK VD AL + + + L T + WQ+GRD+WW
Sbjct: 180 ITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKR------TGSDIDWQEGRDLWW 233
Query: 369 QDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP 428
+D++ K + + E ++AEDPLF+LYTSGSTGKPKGVLHTTGGY+V+ ATTFKY FDY P
Sbjct: 234 RDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHP 293
Query: 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTA 488
D+YWCTAD GW+TGHSY+ YGP+ GA+ ++FEG P +P R +VDK++V I YTA
Sbjct: 294 GDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTA 353
Query: 489 PTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTE 548
PT +R+LM +G++ + R SLR+LGSVGEPINP AW W++ +G +CP+ DTWWQTE
Sbjct: 354 PTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 413
Query: 549 TGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTL 608
TGGFMITPLPGA K GSAT PFFGVQP +VD +G EG G L I SWPG RTL
Sbjct: 414 TGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTL 473
Query: 609 YGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALV 668
+GDHER+E TYF F YF+GDG RD+DGY+W+TGRVDDV+NVSGHR+GTAE+ESALV
Sbjct: 474 FGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 533
Query: 669 SHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIH 728
+HP+ AEAAVVG+ H +KGQ IYA+VTL G S EL + VRK+IG A PD +H
Sbjct: 534 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLH 593
Query: 729 WAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
W LPKTRSGKIMRRILRKIA+ LGDTSTLADPGVV++L+
Sbjct: 594 WTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLE 639
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 579 bits (1493), Expect = 0.0
Identities = 306/644 (47%), Positives = 404/644 (62%), Gaps = 20/644 (3%)
Query: 143 QKYLEMYKRSVEDPAGFWADIASEFY-WKEKWGQRVCSENLDVRKGNVKIEWFKGGITNI 201
Q Y ++K S+EDPA F+ A++F W + + + + R WF G N
Sbjct: 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNA 60
Query: 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAV 260
CYNC+DR+ +K AI +E ++PG ++TY +LL++VCQ+A L +GV+KGD V
Sbjct: 61 CYNCVDRHALKT-PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTV 119
Query: 261 IIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKA 320
+Y+PM+ E I +LA +RIGA+HSVVFAGFSS+SL RI D KVVIT++ RG K
Sbjct: 120 AVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKV 179
Query: 321 IHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCE 380
I K IVD AL E + T + + RD+ W KY T
Sbjct: 180 IETKRIVDDALRETPGVRHVLVYRKT-------NNPSVAFHAPRDLDWATEKKKYKTYYP 232
Query: 381 VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440
VD+EDPLFLLYTSGSTG PKGV H+T GY++ T +Y FD DV++ D GW
Sbjct: 233 CTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGW 292
Query: 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGN 500
ITGH+YV YGP+L G + +VFEG P YP+ R WDI+D++KVT FY APT +R L R G+
Sbjct: 293 ITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD 352
Query: 501 EYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA 560
Y+ +S KSLR LGSVGEPI W W+ +G + PI DT+WQTE+G ++TPL G
Sbjct: 353 SYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG 412
Query: 561 -WPQKPGSATFPFFGVQPVIVDEKGVEI--EGECSGYLCIKSSWPGAFRTLYGDHERYET 617
P KPGSA+FPFFG+ V++D E G L +K++WP RT++ +H+RY
Sbjct: 413 VTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 472
Query: 618 TYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAA 677
TY P+PGYYFTGDG ++DKDGY W+ GRVDDV+NVSGHR+ TAE+E+A++ P AE A
Sbjct: 473 TYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECA 532
Query: 678 VVGVEHEVKGQGIYAFVTLVEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWA 730
VVG ++ GQ + AFV L +S ++++K LV VRK IG FAAP I
Sbjct: 533 VVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILV 592
Query: 731 PGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQLIA 774
LPKTRSGKIMRRILRKI + + D+LGD STL++PG+V LI
Sbjct: 593 DDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 636
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Score = 324 bits (831), Expect = e-102
Identities = 115/555 (20%), Positives = 195/555 (35%), Gaps = 48/555 (8%)
Query: 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVII 262
++ L+R G K + G TY+++ Q+ +L L+ +GV GD V
Sbjct: 14 WDFLERAAAL-FGRKEVVSRL--HTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 70
Query: 263 YLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322
A A +GAV S +A + + KV++ +
Sbjct: 71 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDP---------N 121
Query: 323 LKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVE 382
L +V+A E + + + + +
Sbjct: 122 LLPLVEAIRGELKT-----------------VQHFVVMDEKAPEGYLAYEEALGEEADPV 164
Query: 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442
V + YT+G+TG PKGV+++ ++H+ +
Sbjct: 165 RVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHV 224
Query: 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY 502
+ Y L GA V+ D ++ D VT PT+ +L
Sbjct: 225 NAWCLPYAATLVGAKQVLP---GPRLDPASLVELFDGEGVTFTAGVPTVWLALAD--YLE 279
Query: 503 VTRYSRKSLRVLGSVGEPINPSAWRWFFN-----VVGDSRCPISDTWWQTETGGFMITPL 557
T + K+LR L G S F G S Q + +
Sbjct: 280 STGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 339
Query: 558 PGAWPQKPGSATFPFFGVQPVIVDEKG--VEIEGECSGYLCIKSSWPGAFRTLYGDHERY 615
P V+ + DE+G V +G+ G + +K W YG+ E
Sbjct: 340 EEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWI--TGGYYGNEEAT 397
Query: 616 ETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675
+ G++ TGD D++GY + R+ D+I G I + ++E+AL+ HP+ E
Sbjct: 398 RSALTPD--GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKE 455
Query: 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPK 735
AAVV + H + A V P EEL + L ++ + PD +A +P+
Sbjct: 456 AAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHL---LKAGFAKWQLPDAYVFAEEIPR 512
Query: 736 TRSGKIMRRILRKIA 750
T +GK ++R LR+
Sbjct: 513 TSAGKFLKRALREQY 527
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 295 bits (755), Expect = 2e-91
Identities = 98/564 (17%), Positives = 193/564 (34%), Gaps = 43/564 (7%)
Query: 193 WFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI 252
G + + R A + +A D ++ +TY++ + +LA +K
Sbjct: 14 LEDGTAGEQLHKAMKRY--ALVPGTIAF----TDAHIEVNITYAEYFEMSVRLAEAMKRY 67
Query: 253 GVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312
G+ +++ ++ + +L IG + ++ L + +P VV S
Sbjct: 68 GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSK 127
Query: 313 AVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVV 372
+ + K + + ++++ + +Q +
Sbjct: 128 KGLQ-------------KILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHLP 170
Query: 373 PKY--PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSD 430
P + + + ++ +SGSTG PKGV V + F
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGN---Q 227
Query: 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490
+ TA + H L + + YK+ PT
Sbjct: 228 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPT 287
Query: 491 LVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETG 550
L + + +Y +L + S G P++ I + TET
Sbjct: 288 LFSFFAKS--TLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IRQGYGLTETT 343
Query: 551 GFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLY 609
++ G KPG+ + +VD + G + G LC++ P
Sbjct: 344 SAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVR--GPMIMSGYV 399
Query: 610 GDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVS 669
+ E K G+ +GD D+D + ++ R+ +I G+++ AE+ES L+
Sbjct: 400 NNPEATNALIDKD--GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 457
Query: 670 HPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAA-PDKIH 728
HP +A V G+ + G+ A V L G +E+ +V V Q+ +
Sbjct: 458 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEK---EIVDYVASQVTTAKKLRGGVV 514
Query: 729 WAPGLPKTRSGKIMRRILRKIASR 752
+ +PK +GK+ R +R+I +
Sbjct: 515 FVDEVPKGLTGKLDARKIREILIK 538
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Score = 286 bits (731), Expect = 3e-88
Identities = 103/538 (19%), Positives = 188/538 (34%), Gaps = 71/538 (13%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
+ VAI E + LTY +L + QLA + G+ K V I + ++L I +
Sbjct: 37 PNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 90
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA + G + + + + + + D + ++++T + I V+
Sbjct: 91 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVE------ 144
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
I+ +D + + D +++Y
Sbjct: 145 -------------------------------IFEEDTIKIREGTNLHVPSKSTDLAYVIY 173
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
TSG+TG PKG + + F+ + + D A + + +
Sbjct: 174 TSGTTGNPKGT-MLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 232
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
+ + T D + +++ ++T+ PT V ++ S++ L
Sbjct: 233 AS--LYIILKDTINDFVKFEQYINQKEITVITLPPTYVV--------HLDPERILSIQTL 282
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW-PQKPGSATFPFF 573
+ G +PS + + + + TET T + P
Sbjct: 283 ITAGSATSPSLVNKWK-----EKVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQ 337
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTY----FKPFPGYYFT 629
Q IVDE +G LCI G R + E + F P Y T
Sbjct: 338 NTQIYIVDENLQLKSVGEAGELCIG--GEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395
Query: 630 GDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQG 689
GD DG GR+D+ + + GHR+ EVES L+ H +E AV + +
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455
Query: 690 IYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILR 747
+ A+ + +P E+LR+ +++ + P +P T +GKI R+ L
Sbjct: 456 LCAYFVSEKHIP-LEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 508
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Score = 283 bits (724), Expect = 4e-87
Identities = 101/541 (18%), Positives = 187/541 (34%), Gaps = 47/541 (8%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
GD++AI + +Y +L + +LA + +G+++ D V++ LP + E +
Sbjct: 39 GDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVI 92
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
A R+GA+ S + + I +A + +
Sbjct: 93 FALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSK----- 147
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ G + + + ++ V + D FL
Sbjct: 148 ------------------LPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQL 189
Query: 395 TSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLN 454
+ GSTG K + T Y+ + S VY S +L
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSV-EVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248
Query: 455 GASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514
VV P ++ ++++ KVTI P L M + S + +
Sbjct: 249 AGGRVVL---SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQV 305
Query: 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFG 574
G G + A R V G + + T L + P
Sbjct: 306 G--GAKFSAEAARRVKAVFGCTLQQVFGMAEGLVN----YTRLDDPEEIIVNTQGKPMSP 359
Query: 575 VQPV-IVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ D+ +++ +G+L + + G+Y TGD
Sbjct: 360 YDESRVWDDHDRDVKPGETGHLLTRGPYT----IRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 634 SRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 693
+DGY + GR D IN G ++ EVE+ L++HP +AA+V + + G+ F
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 694 VTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ 753
+ + P + EL+ L + + A+ PD++ + P+T GK+ ++ LR+ S +
Sbjct: 476 IIPRDEAPKAAELKAFL---RERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532
Query: 754 L 754
L
Sbjct: 533 L 533
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Score = 269 bits (687), Expect = 4e-82
Identities = 106/535 (19%), Positives = 184/535 (34%), Gaps = 51/535 (9%)
Query: 215 GDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAM 274
D A+ A LT+++L +V +A L G++ V + P ++ IA+
Sbjct: 16 PDHCALAVPARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAI 71
Query: 275 LACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDEC 334
LA R+GAV +++ S LA+ I + + + + + DA
Sbjct: 72 LALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG----------RQVADAIFQSG 121
Query: 335 AKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLY 394
+ + I L +DG + + E + P F+ Y
Sbjct: 122 SGARIIFLGDL--------------VRDGEPYSYGPPI-------EDPQREPAQPAFIFY 160
Query: 395 TSGSTGKPKGVLHTTGGYMVHT-ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPML 453
TSG+TG PK + + + + +V + G V +
Sbjct: 161 TSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALA 220
Query: 454 NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRV 513
+ VV E + +V + +VT + PT + +L + SLR
Sbjct: 221 LDGTYVVVEEFRP----VDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 514 LGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF 573
+ G + + + + + TE + K G+ P F
Sbjct: 277 VTFAGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYM-----RQPKTGTEMAPGF 328
Query: 574 GVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGC 633
+ IV G E +G G + + T K G+Y T D
Sbjct: 329 FSEVRIVRIGGGVDEIVANGEEGELIVAAS-DSAFVGYLNQPQATAEKLQDGWYRTSDVA 387
Query: 634 SRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAF 693
+G + GRVDD+I G I +E+E L + P E V+G+ + GQ + A
Sbjct: 388 VWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTAC 447
Query: 694 VTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748
V G S + + + ++ F P + LPK K++RR L +
Sbjct: 448 VVPRLGETLSADALDTFCRS--SELADFKRPKRYFILDQLPKNALNKVLRRQLVQ 500
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 778 | |||
| d1pg4a_ | 643 | Acetyl-CoA synthetase {Salmonella enterica [TaxId: | 100.0 | |
| d1ry2a_ | 640 | Acetyl-CoA synthetase {Baker's yeast (Saccharomyce | 100.0 | |
| d1v25a_ | 534 | Long chain fatty acid-CoA ligase TT0168 {Thermus t | 100.0 | |
| d1lcia_ | 541 | Luciferase {Firefly (Photinus pyralis) [TaxId: 705 | 100.0 | |
| d1amua_ | 514 | Phenylalanine activating domain of gramicidin synt | 100.0 | |
| d1mdba_ | 536 | Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil | 100.0 | |
| d3cw9a1 | 503 | 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId | 100.0 | |
| d1l5aa2 | 250 | VibH {Vibrio cholerae [TaxId: 666]} | 90.26 |
| >d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Salmonella enterica [TaxId: 28901]
Probab=100.00 E-value=2.5e-106 Score=949.54 Aligned_cols=634 Identities=54% Similarity=1.005 Sum_probs=561.3
Q ss_pred hhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHhhcccccccCcccccccccccCCCcccccCCCCcccHHHHHHHHhhh
Q 004034 132 DFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIE 211 (778)
Q Consensus 132 lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~~~ 211 (778)
.+..++.. ..++|++|+++|++||+.||.++++.+.|.+++++ +++.+ ...+..+.+||+++++|+++|+|+||++
T Consensus 8 ~~~~~~~~-~~~~y~~l~~~s~~~~~~fW~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~wf~~~~~N~~~n~ldrh~~ 83 (643)
T d1pg4a_ 8 NIADRCLI-NPEQYETKYKQSINDPDTFWGEQGKILDWITPYQK-VKNTS--FAPGNVSIKWYEDGTLNLAANCLDRHLQ 83 (643)
T ss_dssp HHHHHCSS-CHHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCSC-CEEEE--CCTTCCEEEESTTCEECHHHHHTGGGHH
T ss_pred HHHHHhCC-CHHHHHHHHHHHHhCHHHHHHHHHhheeEECCCcc-cccCc--cCCCCCCCeeCCCChhhHHHHHHHHHHH
Confidence 34444444 58999999999999999999999988999998887 54221 2233445799999999999999999998
Q ss_pred ccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCC
Q 004034 212 AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGF 291 (778)
Q Consensus 212 ~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~ 291 (778)
.+||++|+++..++.+..+++||+||.++|+++|++|+++||++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 84 -~~~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~~Gv~~Gd~V~i~~~n~~e~iv~~lA~~~~Gav~v~l~~~~ 162 (643)
T d1pg4a_ 84 -ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGF 162 (643)
T ss_dssp -HHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTS
T ss_pred -hCCCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEecccchHHHHHHHHHHHhCeEEEecCCCC
Confidence 8999999999877767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhc
Q 004034 292 SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDV 371 (778)
Q Consensus 292 ~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (778)
+++++.++|+++++++||+++...+..+....+..+...+... ....+.+++++..... ...+....+..+.+.
T Consensus 163 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~ 236 (643)
T d1pg4a_ 163 SPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKRTGS----DIDWQEGRDLWWRDL 236 (643)
T ss_dssp CHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTST--TCCSCCEEEEECSSCC----CCCCCBTTEEEHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhcc--ccccceEEEEeccCCc----ccccccccchhhhhh
Confidence 9999999999999999999999888888888777776665432 1245677777776543 333444555666666
Q ss_pred cCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHH
Q 004034 372 VPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGP 451 (778)
Q Consensus 372 l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~ 451 (778)
........++..++++|+++|+|||||||+||||+++|++++.+....+...+++.++|++++.+|++|++|+.+.++++
T Consensus 237 ~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~l~~~ 316 (643)
T d1pg4a_ 237 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGP 316 (643)
T ss_dssp HTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHH
T ss_pred hcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 65555666667788999999999999999999999999998888787788889999999999999999999988889999
Q ss_pred HhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHH
Q 004034 452 MLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFN 531 (778)
Q Consensus 452 L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 531 (778)
|+.|++++++++.+..+++..++++|++++||+++++|++++.|++.........++++||.++++||++++++++++.+
T Consensus 317 L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~ 396 (643)
T d1pg4a_ 317 LACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWK 396 (643)
T ss_dssp HHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999988765556778999999999999999999999999
Q ss_pred HhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEecCCCcccccccCC
Q 004034 532 VVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGD 611 (778)
Q Consensus 532 ~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g~~p~v~~gY~~~ 611 (778)
.++..++++++.||+||++++++...++..+.+++++|+|++|++++|+|++|++++.|+.|||+|+|++|++++|||++
T Consensus 397 ~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~ 476 (643)
T d1pg4a_ 397 KIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGD 476 (643)
T ss_dssp HTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTC
T ss_pred HhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCC
Confidence 99877789999999999998777666555567889999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEE
Q 004034 612 HERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIY 691 (778)
Q Consensus 612 ~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lv 691 (778)
++++.+.|+...+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++++++..|+.++
T Consensus 477 ~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~ 556 (643)
T d1pg4a_ 477 HERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIY 556 (643)
T ss_dssp HHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEE
T ss_pred hhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEE
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhHHH
Q 004034 692 AFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVVDQ 771 (778)
Q Consensus 692 a~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (778)
|||+++++...++++.++|+++|+++|++|++|+.|+++++||+|++|||+|++||+++.++..++++.+|++||+++++
T Consensus 557 a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~t~~~p~~l~~ 636 (643)
T d1pg4a_ 557 AYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEK 636 (643)
T ss_dssp EEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC----------CCTTHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCCccccCCccccCChHHHHH
Confidence 99999998887888889999999999999999999999999999999999999999999987667889999999999999
Q ss_pred HHhhh
Q 004034 772 LIALA 776 (778)
Q Consensus 772 ~~~~~ 776 (778)
+++..
T Consensus 637 ~~~~~ 641 (643)
T d1pg4a_ 637 LLEEK 641 (643)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Acetyl-CoA synthetase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-99 Score=895.02 Aligned_cols=625 Identities=49% Similarity=0.883 Sum_probs=525.5
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHhh-cccccccCccccccccccc-CCCcccccCCCCcccHHHHHHHHhhhccCCCeEEE
Q 004034 143 QKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVR-KGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAI 220 (778)
Q Consensus 143 ~~~~~ll~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al 220 (778)
++|++|+++|++||++||.+++.+ +.|.+++++ ++..+.... ......+||+++++|+++|+|++||+ ++||++|+
T Consensus 1 ~~y~~l~~~Si~~~~~Fw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wf~~~~lN~~~n~ldr~a~-~~pd~~Al 78 (640)
T d1ry2a_ 1 QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDK-VFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHAL-KTPNKKAI 78 (640)
T ss_dssp CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSC-SBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHT-TCTTSEEE
T ss_pred CCHHHHHHHHHhCHHHHHHHHHHhheeEecCCeE-eeccCCccCCCCCCCCcCCCCCchhHHHHHHHHHHh-hCCCCEEE
Confidence 479999999999999999999765 789999887 543222111 11223589999999999999999999 89999999
Q ss_pred EEEcCCCCcceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCChHHHHHHHHHHHhCCEEEeCCCCCCHHHHHHH
Q 004034 221 YWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQR 299 (778)
Q Consensus 221 ~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~Gav~vpl~p~~~~~~l~~~ 299 (778)
+|.+++.+..+++||+||+++++++|++|+ ++||++||+|+|+++|++|+++++|||+++|++++|++|.+++++|.++
T Consensus 79 i~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpi~~~~~~~~l~~~ 158 (640)
T d1ry2a_ 79 IFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDR 158 (640)
T ss_dssp EEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHH
T ss_pred EEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHhccCceEeecCCCCCCHHHHHHH
Confidence 998777777899999999999999999997 6899999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccCCCCcccchhhccCCCCCCC
Q 004034 300 IMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKC 379 (778)
Q Consensus 300 l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (778)
++++++++++++....+..+.+..+..+++..... ..+.....+...... ...........+...........
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 231 (640)
T d1ry2a_ 159 INDGDSKVVITTDESNRGGKVIETKRIVDDALRET----PGVRHVLVYRKTNNP---SVAFHAPRDLDWATEKKKYKTYY 231 (640)
T ss_dssp HHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC----TTCCEEEEECSSCCS---SCCCCSSSEEEHHHHHTTSCSCC
T ss_pred HHhhhccccccchhhhhccchhhhHHHHHhhhhhh----cccceeeeecccccc---ccccccccccccccccccccccc
Confidence 99999999999999888888888887776654433 344444444332210 11111122223333333334444
Q ss_pred CccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcchhhhhhHHHHHHHhcCcEEE
Q 004034 380 EVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (778)
Q Consensus 380 ~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~i~~~L~~G~tlv 459 (778)
+.....++|+++|+|||||||+||||+++|++++.+........+++.++|++++.+|++|++|+.+.++++|+.|++++
T Consensus 232 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v 311 (640)
T d1ry2a_ 232 PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATL 311 (640)
T ss_dssp CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEE
T ss_pred ccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccchhhhhhHHHHHHHHHHhCCEEE
Confidence 55667789999999999999999999999999888777777778899999999999999999998889999999999999
Q ss_pred EEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCCCCHHHHHHHHHHhCCCCcc
Q 004034 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (778)
Q Consensus 460 l~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~ 539 (778)
++++.+..+++..++++|++++||+++++|++++.|.+........+++++||.+++|||++++++++++.+.+|...++
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~ 391 (640)
T d1ry2a_ 312 VFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIP 391 (640)
T ss_dssp EECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSC
T ss_pred EecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcce
Confidence 99988888899999999999999999999999999988766555677899999999999999999999999999877788
Q ss_pred eecccccccccceecccCCC-CCCCCCCCcCcCcCCceEEEECCCCce--eCCCeeeEEEEecCCCcccccccCChhhhh
Q 004034 540 ISDTWWQTETGGFMITPLPG-AWPQKPGSATFPFFGVQPVIVDEKGVE--IEGECSGYLCIKSSWPGAFRTLYGDHERYE 616 (778)
Q Consensus 540 i~~~YG~TE~g~~~~~~~~~-~~~~~~~~~G~p~~g~~~~Ivd~~g~~--~~~g~~GEL~v~g~~p~v~~gY~~~~~~~~ 616 (778)
+++.||+||++........+ ..+.+++++|+|++|++++|+|+++.. .+.+..|||+|++++|++++|||++++++.
T Consensus 392 i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~ 471 (640)
T d1ry2a_ 392 IVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYL 471 (640)
T ss_dssp EEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHH
T ss_pred EEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHH
Confidence 99999999999766544433 245678999999999999999985533 355678999999999999999999999999
Q ss_pred hhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEE
Q 004034 617 TTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTL 696 (778)
Q Consensus 617 ~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~ 696 (778)
+.|+.+.+|||+|||+|++|+||+|+|+||+||+||++|+||+|.|||++|.+||+|.||+|++++++..|+.++|||++
T Consensus 472 ~~~~~~~~gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~ 551 (640)
T d1ry2a_ 472 DTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 551 (640)
T ss_dssp HHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEE
T ss_pred hhhccCCCCeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred cCCCCCC-------HHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHHHHhcccCcCCCCCCCCChhhH
Q 004034 697 VEGVPYS-------EELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLADPGVV 769 (778)
Q Consensus 697 ~~~~~~~-------~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~~~~~~~~~~~~~~~~ 769 (778)
+++...+ .++.++|+++++++|++|++|+.|+++++||+|+||||+|++||+++.++.++++|.+|++||+++
T Consensus 552 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~d~~tl~np~~l 631 (640)
T d1ry2a_ 552 KNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDVSTLSNPGIV 631 (640)
T ss_dssp C------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-------------CCHHH
T ss_pred cCCCCccccchHHHHHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhCCccccCCcchhcCHHHH
Confidence 8765332 235688999999999999999999999999999999999999999999887778999999999999
Q ss_pred HHHHhhh
Q 004034 770 DQLIALA 776 (778)
Q Consensus 770 ~~~~~~~ 776 (778)
++|++..
T Consensus 632 ~~~~~~~ 638 (640)
T d1ry2a_ 632 RHLIDSV 638 (640)
T ss_dssp HHHHHTT
T ss_pred HHHHHHh
Confidence 9999864
|
| >d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Long chain fatty acid-CoA ligase TT0168 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.2e-75 Score=672.30 Aligned_cols=516 Identities=22% Similarity=0.266 Sum_probs=388.3
Q ss_pred cccCCCCcccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHH
Q 004034 191 IEWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL 270 (778)
Q Consensus 191 ~~wf~~~~~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~ 270 (778)
+.|+.+..+| ++++|+++++ ++||++|+++... ++.+++||+||+++++++|++|+++|+++||+|+|+++|++++
T Consensus 3 p~~~~~~~~~-l~~~l~~~a~-~~pd~~av~~~~~--g~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~ 78 (534)
T d1v25a_ 3 PSTMMDEELN-LWDFLERAAA-LFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH 78 (534)
T ss_dssp BCCBCCCCCC-THHHHHHHHH-HSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred CCccCCCCCC-HHHHHHHHHH-HcCCCeEEEEecC--CceEEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH
Confidence 4677777666 6889999999 9999999997642 4467899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccC
Q 004034 271 PIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQ 350 (778)
Q Consensus 271 vva~LA~l~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 350 (778)
++++|||+++|++++|++|.++.+++.++|+++++++++++.... .........+ ..+...+.....
T Consensus 79 ~~~~lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~ 145 (534)
T d1v25a_ 79 LEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVEAIRGEL----KTVQHFVVMDEK 145 (534)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHGGGC----SSCCEEEESSSC
T ss_pred HHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhh---------hhHHHHhhcc----cccceeEEeecc
Confidence 999999999999999999999999999999999999999887642 2222222222 445544433322
Q ss_pred CccccccccCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHH-HHHHhhCCCCC
Q 004034 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTAT-TFKYAFDYKPS 429 (778)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~-~~~~~~~~~~~ 429 (778)
.. . ..... ........+.....++++++|+|||||||.||||+++|.+++..... .....+.+...
T Consensus 146 ~~------~----~~~~~---~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~ 212 (534)
T d1v25a_ 146 AP------E----GYLAY---EEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEK 212 (534)
T ss_dssp CC------T----TCEEH---HHHCCSCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTT
T ss_pred cc------c----ccccc---cccccccccccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccc
Confidence 10 0 00000 01111223344567889999999999999999999999996543322 22234556778
Q ss_pred cEEEEeCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCC
Q 004034 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (778)
Q Consensus 430 d~~l~~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~ 509 (778)
|++++.+|+.|..+.. ..+.+++.|+++++.... +++..++.++.++++|++.++|+++..++.... ....+++
T Consensus 213 d~~~~~~p~~~~~~~~-~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~--~~~~~~~ 286 (534)
T d1v25a_ 213 DVVLPVVPMFHVNAWC-LPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLK 286 (534)
T ss_dssp CEEEECSCTTSHHHHT-HHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCS
T ss_pred cccccccchhhhcccc-ccceeeeecceeeecccc---ccccccchhhhhccccccccCchhhhhhhhhhc--ccccccc
Confidence 9999999999988754 445567788888877542 589999999999999999999999999987654 3455889
Q ss_pred ceeEEEEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCC---------CCCCCCcCcCcCCceEEEE
Q 004034 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAW---------PQKPGSATFPFFGVQPVIV 580 (778)
Q Consensus 510 sLr~v~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~---------~~~~~~~G~p~~g~~~~Iv 580 (778)
+||.+++||+++++.+++++.+ ++ ..+++.||+||++.++........ ...++++|+|++|++++|+
T Consensus 287 ~lr~~~~gG~~~~~~~~~~~~~-~~---~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~ 362 (534)
T d1v25a_ 287 TLRRLVVGGSAAPRSLIARFER-MG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVA 362 (534)
T ss_dssp SCCEEEECSSCCCHHHHHHHHH-TT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEE
T ss_pred ceeEEEEecCCCCHHHHHHHHH-hC---CeeeeeccccccccceeecccCccccccCccccccccccceeccCCcEEEEE
Confidence 9999999999999999998875 44 689999999999987765432210 1235789999999999999
Q ss_pred CCCCceeCC--CeeeEEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceee
Q 004034 581 DEKGVEIEG--ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRI 658 (778)
Q Consensus 581 d~~g~~~~~--g~~GEL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI 658 (778)
|+++++++. |+.|||+|+| |+++.|||++++.+...+.. +|||+|||+|++++||+|+++||.||+||++|+||
T Consensus 363 d~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~t~~~~~~--dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v 438 (534)
T d1v25a_ 363 DEEGRPVPKDGKALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWI 438 (534)
T ss_dssp CTTSCBCCSSSCCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEE
T ss_pred CCCCCCCCCCCCeeEEEEEcC--CcccceecCChhhhhhhccc--CCCCccCceeEECCCccEEEecccccEEEECCEEE
Confidence 999999876 6789999999 89999999999988887754 78999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCccceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCC
Q 004034 659 GTAEVESALVSHPQCAEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRS 738 (778)
Q Consensus 659 ~~~eIE~~L~~~p~V~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~s 738 (778)
+|.|||++|.+||+|.||+|++++++..++.++|+|+++.+.... .+.++.++++.||+|++|+.|+++++||+|++
T Consensus 439 ~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~---~~~~~~~~~~~l~~~~~P~~i~~~~~lP~t~~ 515 (534)
T d1v25a_ 439 SSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP---EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSA 515 (534)
T ss_dssp EHHHHHCC----------CEEEEECSSSSEEEEECC----------------------CCCTTTSCSBC-----------
T ss_pred CHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCH---HHHHHHHHHhcCCcCCCccEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999987654332 23344457889999999999999999999999
Q ss_pred CcccHHHHHHHHhcc
Q 004034 739 GKIMRRILRKIASRQ 753 (778)
Q Consensus 739 GKi~R~~L~~~~~~~ 753 (778)
|||+|++||+++.+.
T Consensus 516 GKi~R~~lr~~~~~~ 530 (534)
T d1v25a_ 516 GKFLKRALREQYKNY 530 (534)
T ss_dssp ---CCTTHHHHSTTS
T ss_pred ccccHHHHHHHHHhh
Confidence 999999999988643
|
| >d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Luciferase species: Firefly (Photinus pyralis) [TaxId: 7054]
Probab=100.00 E-value=7.1e-74 Score=659.85 Aligned_cols=512 Identities=19% Similarity=0.248 Sum_probs=402.4
Q ss_pred HHHHHHHhhh--ccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHH
Q 004034 202 CYNCLDRNIE--AGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (778)
Q Consensus 202 ~~~~l~~~~~--~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~ 279 (778)
+.++|.++++ +..|+++|++.. +.++++||+||++++.++|+.|+++||++||+|+|+++|++++++++|||++
T Consensus 19 ~~~~l~~~~~~~~~~P~~~a~~d~----~~~~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e~~v~~lA~~~ 94 (541)
T d1lcia_ 19 AGEQLHKAMKRYALVPGTIAFTDA----HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALF 94 (541)
T ss_dssp HHHHHHHHHHHHHTSTTCEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEeC----CCCeEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 4444544443 025899998864 3367899999999999999999999999999999999999999999999999
Q ss_pred hCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCcccccccc
Q 004034 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (778)
Q Consensus 280 ~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (778)
+|++++|+++.++.+++.++|+++++++||++++.. +.+.+....+ +....+++++..... ..
T Consensus 95 ~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~----~~~~~~~~~~~~~~~----~~ 157 (541)
T d1lcia_ 95 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNVQKKL----PIIQKIIIMDSKTDY----QG 157 (541)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHHHHHC----TTCCEEEETTCSSCB----TT
T ss_pred hCeEEEecCCCCCHHHHHHHHHhccceEEeeecccc---------ccchhccccc----cccceeeeecCCccc----cc
Confidence 999999999999999999999999999999987642 3344444444 566666665543210 00
Q ss_pred CCCCcccchhhccC---CCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHH--hhCCCCCcEEEE
Q 004034 360 WQDGRDIWWQDVVP---KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY--AFDYKPSDVYWC 434 (778)
Q Consensus 360 ~~~~~~~~~~~~l~---~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~--~~~~~~~d~~l~ 434 (778)
+..... ....... ......+.....+++++||+|||||||.||||+++|++++......... ...+.+++++++
T Consensus 158 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (541)
T d1lcia_ 158 FQSMYT-FVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILS 236 (541)
T ss_dssp BEEHHH-HHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEE
T ss_pred cchhhh-hhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhcccccccccccccc
Confidence 000000 0000111 1112223344567889999999999999999999999965544333222 235677899999
Q ss_pred eCCcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEE
Q 004034 435 TADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVL 514 (778)
Q Consensus 435 ~~~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v 514 (778)
.+|+.|..+ ....+..+..++.+++... .+....+.++..+++|.+.++|+++..++.... ....++++||.+
T Consensus 237 ~~p~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~--~~~~~~~~l~~v 309 (541)
T d1lcia_ 237 VVPFHHGFG-MFTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNLHEI 309 (541)
T ss_dssp CSCTTSHHH-HHHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSC--GGGSCCTTCCEE
T ss_pred ccccccccc-ccccccccccccccccccc----cccchhHHHHhhhhccccccCcccccccccccc--ccccccccceEE
Confidence 999999887 4555667778888777643 478889999999999999999999999998765 345578999999
Q ss_pred EEecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECC-CCceeCCCeee
Q 004034 515 GSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSG 593 (778)
Q Consensus 515 ~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~-~g~~~~~g~~G 593 (778)
++|||++++..++++.+.++. ..+++.||+||+++.++..... ..+++++|+|++|++++|+|+ ++++++.|+.|
T Consensus 310 ~~gG~~~~~~~~~~~~~~~~~--~~~~~~YG~TE~~~~~~~~~~~--~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~G 385 (541)
T d1lcia_ 310 ASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRG 385 (541)
T ss_dssp ECTTCCCCHHHHHHHHHHTTC--SCCBCEECCGGGSSCSEECCCC-----CCCCBEECTTCEEEEECTTTCCBCCTTCCE
T ss_pred EecccccccccccccccccCC--ceeeecCCccccCceEEecCcc--cCCCCccccccCCCEEEEEECCCCcCCCCCCeE
Confidence 999999999999999999873 5689999999999876654333 356789999999999999995 68999999999
Q ss_pred EEEEecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCcc
Q 004034 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQC 673 (778)
Q Consensus 594 EL~v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V 673 (778)
||+|+| |+++.||+++++.+...+.. +|||+|||+|++|+||+++++||.||+||++|++|+|.|||++|.+||+|
T Consensus 386 el~v~g--~~~~~gY~~~~~~~~~~~~~--~~~~~TGDl~~~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V 461 (541)
T d1lcia_ 386 ELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNI 461 (541)
T ss_dssp EEEEES--TTSCSEETTBHHHHHHHBCT--TSCEEEEEEEEECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTE
T ss_pred EEEEcc--CccCCeeCCChhhhhhcccC--CccccCCCeeEEcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCc
Confidence 999999 89999999999877766543 78999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCC-ccccEEEECCCCCCCCCCcccHHHHHHHHhc
Q 004034 674 AEAAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAF-AAPDKIHWAPGLPKTRSGKIMRRILRKIASR 752 (778)
Q Consensus 674 ~ea~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 752 (778)
.||+|++++++..++.++|+|+++++...+ .++|+++|+++|+++ ++|..|+++++||+|++|||+|++|++++.+
T Consensus 462 ~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~ 538 (541)
T d1lcia_ 462 FDAGVAGLPDDDAGELPAAVVVLEHGKTMT---EKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 538 (541)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHHHSCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHH
T ss_pred cEEEEEEEECCCCCEEEEEEEEECCCCCCC---HHHHHHHHHHhCCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHH
Confidence 999999999998899999999998876655 568999999999876 5799999999999999999999999999875
Q ss_pred c
Q 004034 753 Q 753 (778)
Q Consensus 753 ~ 753 (778)
+
T Consensus 539 ~ 539 (541)
T d1lcia_ 539 A 539 (541)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Phenylalanine activating domain of gramicidin synthetase 1 species: Bacillus brevis [TaxId: 1393]
Probab=100.00 E-value=9.3e-72 Score=638.49 Aligned_cols=481 Identities=21% Similarity=0.255 Sum_probs=401.9
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++|+ ++||++|++++ ++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 24 tl~~l~~~~a~-~~Pd~~Al~~~------~~~~Ty~eL~~~v~~lA~~L~~~Gv~~gd~Vai~~~n~~~~v~~~la~~~~ 96 (514)
T d1amua_ 24 TIHQLFEEQVS-KRPNNVAIVCE------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 96 (514)
T ss_dssp CHHHHHHHHHH-HCTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHH-hCCCCeEEEEC------CeeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 68999999999 99999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.+++++++++++|++.... . .+... .............
T Consensus 97 G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~---------~----~~~~~----~~~~~~~~~~~~~--------- 150 (514)
T d1amua_ 97 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLV---------H----LIHNI----QFNGQVEIFEEDT--------- 150 (514)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------H----HHTTS----CCCSEEEECCCST---------
T ss_pred CcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhh---------h----hhhhh----ccccccccccccc---------
Confidence 99999999999999999999999999999986542 1 11110 1111111111100
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
...........+..++++++|+|||||||.||+|+++|.++ ..........+...++|++++.+|+.|
T Consensus 151 -----------~~~~~~~~~~~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~-~~~~~~~~~~~~~~~~d~~l~~~p~~~ 218 (514)
T d1amua_ 151 -----------IKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI-SNLKVFFENSLNVTEKDRIGQFASISF 218 (514)
T ss_dssp -----------TTTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHH-HHHHHHHHHTSCCCTTCEEEECSCTTS
T ss_pred -----------ccccccccCCCCCCcccceEEEEccCCCCCccccccccccc-ccccccccccccccccccccceecccc
Confidence 00111122233456889999999999999999999999995 455555667788999999999999999
Q ss_pred hhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecCC
Q 004034 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (778)
Q Consensus 441 ~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (778)
..+ .+.++.+++.|+++++.... ...+...+++.+..+.++.+..+|...... ...++++++.++++|++
T Consensus 219 ~~~-~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~G~~ 288 (514)
T d1amua_ 219 DAS-VWEMFMALLTGASLYIILKD-TINDFVKFEQYINQKEITVITLPPTYVVHL--------DPERILSIQTLITAGSA 288 (514)
T ss_dssp THH-HHHHHHHHTTTCEEEECCHH-HHTCHHHHHHHHHHTTCCEEEECHHHHTTS--------CTTTCCSCSEEEEESSC
T ss_pred ccc-cccccccccccccccccccc-cccchhhhhhhhhhhhcccccceeeecccc--------cccccccccEEEEeccc
Confidence 987 56778889999999887542 223667889999999999999999864432 23468899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcceecccccccccceecccCCCC-CCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEEEec
Q 004034 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA-WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (778)
Q Consensus 521 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~-~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~v~g 599 (778)
+++++.+++.+ ++.+++.||+||++.+.+...... .....++.|.++++..+.+.|+++++++.|+.|||+|+|
T Consensus 289 ~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~ 363 (514)
T d1amua_ 289 TSPSLVNKWKE-----KVTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 363 (514)
T ss_dssp CCHHHHHHHTT-----TSEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHhhhhcc-----ceeEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEcc
Confidence 99999877655 368999999999998765443322 233456789999999999999999999999999999999
Q ss_pred CCCcccccccCChhhhhhhcc----CCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccce
Q 004034 600 SWPGAFRTLYGDHERYETTYF----KPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAE 675 (778)
Q Consensus 600 ~~p~v~~gY~~~~~~~~~~~~----~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~e 675 (778)
|.+++|||++++.+...|. .+.+|||+|||+|++|+||+|+|+||+||+||++|++|+|.+||++|.+||+|.|
T Consensus 364 --~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~ 441 (514)
T d1amua_ 364 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 441 (514)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEE
T ss_pred --CcccccccccccccceeeEeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccE
Confidence 8999999999988777664 3457899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhhcCCCccccEEEECCCCCCCCCCcccHHHHHH
Q 004034 676 AAVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRK 748 (778)
Q Consensus 676 a~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 748 (778)
|+|++.+++..++.++|+|+++++.. .++|+++++++|++|++|..|+++++||+|++|||+|++||+
T Consensus 442 ~~V~~~~~~~~g~~~~a~v~~~~~~~-----~~~l~~~~~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 509 (514)
T d1amua_ 442 TAVSVHKDHQEQPYLCAYFVSEKHIP-----LEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE 509 (514)
T ss_dssp EEEEEEECTTSCEEEEEEEEESSCCC-----HHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred EEEEEEECCCCCEEEEEEEEcCCCCC-----HHHHHHHHHhhCCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence 99999999989999999999987653 578999999999999999999999999999999999999986
|
| >d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: Dihydroxybenzoate-AMP ligase DhbE species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=2.3e-71 Score=637.71 Aligned_cols=505 Identities=22% Similarity=0.298 Sum_probs=414.0
Q ss_pred HHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHHHh
Q 004034 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (778)
Q Consensus 201 ~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l~~ 280 (778)
+++++|+++|+ ++||++|+++. ++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 26 tl~~~l~~~a~-~~pd~~Al~~~------~~~~Ty~el~~~v~~~A~~L~~~Gv~~gd~V~i~~~n~~~~~v~~lA~~~~ 98 (536)
T d1mdba_ 26 TFGDLLRDRAA-KYGDRIAITCG------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (536)
T ss_dssp CHHHHHHHHHH-HHTTSEEEEET------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HCCCCeEEEEC------CEeEcHHHHHHHHHHHHHHHHHcCcCCcCEEEEEeCCCHHHHHHHHHHHHh
Confidence 58999999999 89999999986 689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccccC
Q 004034 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (778)
Q Consensus 281 Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (778)
|++++|++|.++.+++.++|++++++++++++..... ............. +.+...+......
T Consensus 99 G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~--------- 161 (536)
T d1mdba_ 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF----DYRSLARQVQSKL----PTLKNIIVAGEAE--------- 161 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE----EHHHHHHHHHHHC----TTCCCEEEESCCT---------
T ss_pred CcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhh----hhhhhhhhhhhcc----ccccceeeeeccc---------
Confidence 9999999999999999999999999999998754321 1111111111211 2333232221111
Q ss_pred CCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhhCCCCCcEEEEeCCcch
Q 004034 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (778)
Q Consensus 361 ~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~ 440 (778)
....+.+. ...........++|+++|+|||||||.||||+++|++++.+ .......+++.++|++++..++.|
T Consensus 162 ---~~~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~-~~~~~~~~~~~~~d~~l~~~~~~~ 234 (536)
T d1mdba_ 162 ---EFLPLEDL---HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYS-LKRSVEVCWLDHSTVYLAALPMAH 234 (536)
T ss_dssp ---TSEEGGGC---CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHH-HHHHHHHHTCCTTCEEEECSCTTS
T ss_pred ---cccchhhc---ccCCcCCCccCccchHHhhhcccccccceeccccccccccc-cccccccccccccccccccccccc
Confidence 00111111 12223344567899999999999999999999999996544 455667789999999999999999
Q ss_pred hhhhhHHHHHHHh-cCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEEecC
Q 004034 441 ITGHSYVTYGPML-NGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (778)
Q Consensus 441 ~~g~~~~i~~~L~-~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~gGe 519 (778)
.+++...++..++ .|.+++..+. +++..+++.+++++++.+..+|..+..+..... .....+++++.+++||+
T Consensus 235 ~~~l~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~ 308 (536)
T d1mdba_ 235 NYPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGA 308 (536)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESS
T ss_pred ccceeeccccccccccccccccCC----CCHHHHHHHHhhhccccccccchhhhhhhhhcc--ccccccCcceeEEEecc
Confidence 8875444444444 4566655432 589999999999999999999999998877643 23457789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcC-CceEEEECCCCceeCCCeeeEEEEe
Q 004034 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFF-GVQPVIVDEKGVEIEGECSGYLCIK 598 (778)
Q Consensus 520 ~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~-g~~~~Ivd~~g~~~~~g~~GEL~v~ 598 (778)
++++...+++.+.++ ......|+.+|.+....... .......+++|+|++ +....|.+++|++++.++.|||+|+
T Consensus 309 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~ 384 (536)
T d1mdba_ 309 KFSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTRLD-DPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTR 384 (536)
T ss_dssp CCCHHHHTTHHHHTC---SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred ccccccccchhhccC---ceeeeccccccccccccccc-cccccccCCcccCCCCcceEEEEcCCCCeecccccceeecC
Confidence 999999999999987 67888888888776544322 122235578999986 5666677889999999999999999
Q ss_pred cCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceEEE
Q 004034 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAV 678 (778)
Q Consensus 599 g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea~V 678 (778)
| |.+++||+++++.+...+.. +|||+|||++++++||+|+++||+||+||++|+||+|.|||++|.+||+|.||+|
T Consensus 385 g--~~~~~gY~~~~~~~~~~~~~--~~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~v 460 (536)
T d1mdba_ 385 G--PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAM 460 (536)
T ss_dssp C--TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEE
T ss_pred C--Cccccccccccccccccccc--cCccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEE
Confidence 9 89999999999877776654 7899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHhh-cCCCccccEEEECCCCCCCCCCcccHHHHHHHHhccc
Q 004034 679 VGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVRKQ-IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQL 754 (778)
Q Consensus 679 v~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 754 (778)
++++++..++.++|||+++++... .++|+++++++ ||.|++|+.|+++++||+|++|||+|++|++++.+++
T Consensus 461 vg~~~~~~g~~~~a~v~~~~~~~~----~~~l~~~l~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l 533 (536)
T d1mdba_ 461 VSMPDQFLGERSCVFIIPRDEAPK----AAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533 (536)
T ss_dssp EEEEETTTEEEEEEEEEESSSCCC----HHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred EEEEcCCCCeEEEEEEEECCCCCC----HHHHHHHHHhcCCCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHH
Confidence 999999889999999999876543 56788889875 9999999999999999999999999999999987543
|
| >d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Acetyl-CoA synthetase-like superfamily: Acetyl-CoA synthetase-like family: Acetyl-CoA synthetase-like domain: 4-chlorobenzoyl CoA ligase species: Alcaligenes sp. [TaxId: 512]
Probab=100.00 E-value=3.2e-68 Score=604.64 Aligned_cols=499 Identities=21% Similarity=0.210 Sum_probs=407.6
Q ss_pred ccHHHHHHHHhhhccCCCeEEEEEEcCCCCcceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCChHHHHHHHHHH
Q 004034 199 TNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (778)
Q Consensus 199 ~n~~~~~l~~~~~~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~Vai~~~~s~e~vva~LA~l 278 (778)
+++++++|+++|+ ++||++|+++.+ .++++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 1 ~~ti~~~l~~~a~-~~pd~~al~~~~----~~~~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~ 75 (503)
T d3cw9a1 1 MQTVNEMLRRAAT-RAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALH 75 (503)
T ss_dssp CCCHHHHHHHHHH-HSTTSEEEEEGG----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-hCCCCeEEEECC----CCcEEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHHHHHHHHHHH
Confidence 3579999999999 999999999863 26799999999999999999999999999999999999999999999999
Q ss_pred HhCCEEEeCCCCCCHHHHHHHHHhcCCcEEEEcCCcccCCcccchHHHHHHHHHHHhhcCCCccEEEEEccCCccccccc
Q 004034 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (778)
Q Consensus 279 ~~Gav~vpl~p~~~~~~l~~~l~~~~~~~iit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (778)
++|++++|++|.++++++++++++++++++|++.... . ...+... .....++.+.+...
T Consensus 76 ~~G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~----------~-~~~~~~~----~~~~~~i~~~~~~~------ 134 (503)
T d3cw9a1 76 RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----------V-ADAIFQS----GSGARIIFLGDLVR------ 134 (503)
T ss_dssp HHTCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHH----------H-HHHHHHT----TCCCEEEEHHHHEE------
T ss_pred HhCcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchH----------H-HHHHhhh----ccccccccchhhhh------
Confidence 9999999999999999999999999999999886521 1 1111111 23333443332110
Q ss_pred cCCCCcccchhhccCCCCCCCCccccCCCCcEEEEeCCCCCCCCceEEEccchHHHHHHHHHHHhh--CCCCCcEEEEeC
Q 004034 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAF--DYKPSDVYWCTA 436 (778)
Q Consensus 359 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~d~a~Il~TSGSTG~PKgV~~th~~~l~~~~~~~~~~~--~~~~~d~~l~~~ 436 (778)
+..........+....+++++++|+|||||||.||+|+++|++++.+.. .....+ .....+++++.+
T Consensus 135 ----------~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 203 (503)
T d3cw9a1 135 ----------DGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHGRHNVVLGLM 203 (503)
T ss_dssp ----------TTEECCCSCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHH-HHHHTSCCCSSTTCEEEECS
T ss_pred ----------hhcccccCCccccccchhhhhhhhcccccccccccccccccchhhhhhh-hccccccccccccccccccC
Confidence 0000111122233456789999999999999999999999999655443 333333 344568999999
Q ss_pred CcchhhhhhHHHHHHHhcCcEEEEEcCCCCCCChhHHHHHHHHhCccEEEecHHHHHHHHhcCCcccccCCCCceeEEEE
Q 004034 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (778)
Q Consensus 437 ~~~~~~g~~~~i~~~L~~G~tlvl~~~~~~~~~~~~~~~~i~~~~vT~l~~~Ps~l~~L~~~~~~~~~~~~l~sLr~v~~ 516 (778)
|+.|..+.....+.+...++++++.+. .++..++..+.+++++++..+|+.+..++...........+++||.+++
T Consensus 204 p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~ 279 (503)
T d3cw9a1 204 PLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (503)
T ss_dssp CTTSHHHHHTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEE
T ss_pred ccccccccccccccccccccccccccc----cChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEe
Confidence 998877766666777778888887654 4899999999999999999999999888765443344567789999999
Q ss_pred ecCCCCHHHHHHHHHHhCCCCcceecccccccccceecccCCCCCCCCCCCcCcCcCCceEEEECCCCceeCCCeeeEEE
Q 004034 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (778)
Q Consensus 517 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~g~~~~~~~~~~~~~~~~~~G~p~~g~~~~Ivd~~g~~~~~g~~GEL~ 596 (778)
|||+++++.+.++...++ ..+.+.||.||++..+....... ......+.+.+.....+.+..++.++.|+.|++.
T Consensus 280 gG~~~~~~~~~~~~~~~~---~~~~~~yg~~e~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~ 354 (503)
T d3cw9a1 280 AGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNSLYMRQPKT--GTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELI 354 (503)
T ss_dssp CSSCCCHHHHHHHHHHCC---SEEEEEEEETTTEEEEEEESCSS--SSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEE
T ss_pred cccccccccccccccccc---ccccccccccccceeeeeccccc--cccccccccccceeeeeecccCcccCCCcccccc
Confidence 999999999999999886 57999999999987666443322 2333445555555655667788999999999998
Q ss_pred EecCCCcccccccCChhhhhhhccCCCCCeEEcCcEEEEecCCeEEEEeecCCEEEeCceeeCHHHHHHHHhcCCccceE
Q 004034 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSRDKDGYHWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEA 676 (778)
Q Consensus 597 v~g~~p~v~~gY~~~~~~~~~~~~~~~~G~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~rI~~~eIE~~L~~~p~V~ea 676 (778)
+.+. +....+|+++++.+.+.+. +|||+|||+|++++||+|+++||+||+||++|++|+|.|||++|.+||+|.||
T Consensus 355 ~~~~-~~~~~~~~~~~~~t~~~~~---~g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~ 430 (503)
T d3cw9a1 355 VAAS-DSAFVGYLNQPQATAEKLQ---DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEV 430 (503)
T ss_dssp EECC-TTSCCCBTTCHHHHHHHEE---TTEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred cccc-ccccccccCChhhhHHHhc---CCceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEE
Confidence 8875 6777889999988877653 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHH-hhcCCCccccEEEECCCCCCCCCCcccHHHHHHHH
Q 004034 677 AVVGVEHEVKGQGIYAFVTLVEGVPYSEELRKSLVLAVR-KQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIA 750 (778)
Q Consensus 677 ~Vv~~~~~~~~~~lva~Vv~~~~~~~~~~l~~~l~~~l~-~~Lp~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~ 750 (778)
+|++.+++..++.++|||+++++...+ .++|+++++ ++||+|++|+.|+++++||+|++|||+|++|++.+
T Consensus 431 ~v~~~~~~~~g~~~~a~v~~~~~~~~~---~~~l~~~~~~~~l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~ 502 (503)
T d3cw9a1 431 VVIGLADQRWGQSVTACVVPRLGETLS---ADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (503)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTCCCC---HHHHHHHHHHSSSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEEEEECCCCCeEEEEEEEeCCCCCCC---HHHHHHHHHhcCCCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence 999999998899999999998776655 578888895 67999999999999999999999999999999876
|
| >d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=90.26 E-value=0.0073 Score=58.53 Aligned_cols=59 Identities=7% Similarity=-0.023 Sum_probs=49.5
Q ss_pred ccchhhhhhhccccCCCCCcccCCChhhhhccCCCChHHHHHHHHHHhhCHHHHHHHHHh
Q 004034 106 KISRLNAVILGEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIAS 165 (778)
Q Consensus 106 kfdl~~~~~~~~~~~~~~~~~~y~t~lf~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~ 165 (778)
.+||.+.+...+ ++.+...++|++++|+++++.+++++|..+|++++++|+++++++..
T Consensus 185 ~~dl~l~v~~~~-~~~l~l~~~y~~~~~~~~~i~~l~~~~~~ll~~l~~~p~~~~~~l~~ 243 (250)
T d1l5aa2 185 AEGINFTFRGSP-QHELCLDITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVAR 243 (250)
T ss_dssp CCSEEEEEEECT-TSCEEEEEEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHH
T ss_pred eeeEEEEEEEcC-CceEEEEEEEehhhCCHHHHHHHHHHHHHHHHHHHhCcCcccchhhh
Confidence 457766665332 45578899999999999999999999999999999999999988853
|