Citrus Sinensis ID: 004037
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 777 | 2.2.26 [Sep-21-2011] | |||||||
| Q93XX4 | 751 | C2 domain-containing prot | yes | no | 0.927 | 0.960 | 0.604 | 0.0 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | yes | no | 0.486 | 0.424 | 0.258 | 4e-20 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.477 | 0.662 | 0.227 | 6e-19 | |
| A0FGR9 | 886 | Extended synaptotagmin-3 | yes | no | 0.478 | 0.419 | 0.244 | 7e-19 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | yes | no | 0.409 | 0.357 | 0.234 | 1e-17 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.487 | 0.666 | 0.230 | 3e-15 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | no | no | 0.380 | 0.321 | 0.234 | 9e-15 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.380 | 0.350 | 0.237 | 1e-14 | |
| Q03640 | 1545 | Tricalbin-3 OS=Saccharomy | yes | no | 0.391 | 0.196 | 0.233 | 8e-14 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.132 | 0.100 | 0.403 | 3e-13 |
| >sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/772 (60%), Positives = 567/772 (73%), Gaps = 51/772 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSS-DDPL---------- 409
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG
Sbjct: 410 --KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPG 464
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---S 539
+EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S
Sbjct: 465 AEVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKS 514
Query: 540 IRRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGS 596
+ RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG
Sbjct: 515 VGRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGP 574
Query: 597 IPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
+ K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 575 LSGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGH 630
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITR 709
+ S D+ + ++ + P + TRD N +
Sbjct: 631 KEIVPESDSGTDSESSDDDDAFTCVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLA 686
Query: 710 TSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 761
T+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 687 TAKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 113/437 (25%), Positives = 187/437 (42%), Gaps = 59/437 (13%)
Query: 8 IMHHVGIVLFLL---WLLSYFDRCHPAAYFISLIYLYSVHDRY--VMRLRRKVEFEERKN 62
+ V VLF L +L Y +L++++ +R + RL EF E +
Sbjct: 39 LYSFVARVLFYLAPVYLAGYLGLSVTWLLLGALLWMWWRRNRRGKLGRLEAAFEFLEHER 98
Query: 63 SFQRRVLK-----------DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYK 111
F R L+ D E V W N I ++WP + I K+ EK +
Sbjct: 99 EFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPY-LSMIMENKIR--------EKLE 149
Query: 112 PWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAIL 165
P +K++ LY G+ P + ++V + + L+L + ++ ++S
Sbjct: 150 PKIREKSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEIS--- 206
Query: 166 AVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKP 224
V+L+K G V+G+ ++G + V ++ L PFI + V F + P+ Q+
Sbjct: 207 -VELQKIRG-------GVSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQKPHLQIN--- 255
Query: 225 IFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPV 284
+T ++ + PGI D LL LV PN + V V K + ++ V P
Sbjct: 256 -WTGLTNLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGL-----DVTNLRVPLPC 309
Query: 285 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
RV ++EA + D L G +DPY K +G R++T K L+P W+E F +
Sbjct: 310 GVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMV 369
Query: 341 STWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399
++ P L +++ D+D DD LG I + D+ + D W L + GRLHL +
Sbjct: 370 --YEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTTSGRLHLRLE 427
Query: 400 VLEESAKQGVDSPCDGG 416
L Q + D G
Sbjct: 428 WLSLLTDQEALTENDSG 444
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 184/405 (45%), Gaps = 34/405 (8%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + + WLNH + K+WP E A+ +L+ + LE+Y+P L LG
Sbjct: 64 VFSERQKLTWLNHHLTKIWPYVDE--AASELIKASVEPVLEQYRPAIVASLTFSKLTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + V+ D + + LEL M + D + + + ++ +G + + V +
Sbjct: 122 VAPQFTGVSVI--DGDKNGITLELDMQW----DGNPNIVLGVKTLVGVSL--PIQVKNIG 173
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
G L+ + +P + V E T+K + G D++ PG++ +++ +
Sbjct: 174 FTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVV---GGDISAIPGLSEAIEETI 230
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P V K PG++ +++K PV V++V+A ++ DL G +
Sbjct: 231 RDAVEDSITWP------VRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKS 283
Query: 307 DPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
DP+ K + P R R+KT L+P W+E F + + +++V D+ +
Sbjct: 284 DPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASEL 343
Query: 364 LGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLAITVLEESAKQGVDSPCDG 415
+G I + +L G+ D+W+ L ++++I G +HL + + + G+ +P
Sbjct: 344 IGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVT 403
Query: 416 GTLNKEGMGNKEDQSNKEDIRESFANETTDKG--SFSSVSSEKSP 458
++ K D +++E+ + +G S + +S+E+ P
Sbjct: 404 SSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIP 448
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 187/437 (42%), Gaps = 65/437 (14%)
Query: 14 IVLFLLWLLSYFDRCHPAAYFI---------SLIYLYSVHDRY--VMRLRRKVEFEERKN 62
+ F++ +L Y + A Y +L++++ +R + RL EF + +
Sbjct: 35 LCTFVVRVLFYLGPVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFEFLDNER 94
Query: 63 SFQRRVLK-----------DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYK 111
F R L+ D E V W N I + WP + I K F EK +
Sbjct: 95 EFISRELRGQHLPAWIHFPDVERVEWANKIISQTWPY-LSMIMESK--------FREKLE 145
Query: 112 PWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAIL 165
P +K++ LY G+ P + ++ + + + ++L + ++ ++S
Sbjct: 146 PKIREKSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGDCEIS--- 202
Query: 166 AVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKP 224
V+L+K + V G+ ++G + V ++ L PF+ + V F + P+ Q+
Sbjct: 203 -VELQK-------IQAGVNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQIN--- 251
Query: 225 IFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPV 284
+T ++ + PGI D LL LV PN + V V K + ++ P
Sbjct: 252 -WTGLTNLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTNLRFPLPC 305
Query: 285 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
RV ++EA + D L G +DPY K +G FR++T + L+P W+E F +
Sbjct: 306 GVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEFMV 365
Query: 341 STWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399
++ P L +++ D+D DD LG I + D+ + D W L + GRLHL +
Sbjct: 366 --YEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSGRLHLRLE 423
Query: 400 VLEESAKQGVDSPCDGG 416
L Q V + GG
Sbjct: 424 WLSLLTDQEVLTEDHGG 440
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/358 (23%), Positives = 162/358 (45%), Gaps = 40/358 (11%)
Query: 71 DSETVRWLNHAIEKMWP---ICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
D E V WLN + +MWP + +E++ K+ P++ K +T K ++LG
Sbjct: 155 DVERVEWLNKVVGQMWPYIGMYVEKMFQDKVE-PLVRSSSAHLKAFTFTK-----VHLGE 208
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P + ++ ++ D ++L+L +++ D+ + VK + G V G+
Sbjct: 209 KFPRINGVKSYTKNVDKREVILDLQLSY--NGDVEINVEVKKMCKAG--------VKGVQ 258
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
+ G + ++ L PF+ + + F + P+ + +T +V E PG++ + D ++
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDIN----WTGLTNVLEIPGVSDFSDSMI 314
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYA--RVEVVEASDMKPSD--- 301
LV PN +F P + ++ P+ + R+ ++EA D+ P D
Sbjct: 315 VDMIASHLVLPN-------RFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYL 367
Query: 302 ---LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358
+ G +DPY ++G F+++T ++ L+PKW E + + + L +++ D+D
Sbjct: 368 KGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFVVHEVPGQD-LEVDLYDEDP 426
Query: 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGG 416
DD LG I + + + D W PL ++ G +HL + L K S GG
Sbjct: 427 DKDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLEWLSLLPKSEKLSEAKGG 484
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 191/434 (44%), Gaps = 55/434 (12%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + WLN +EK+WP E A+ +L+ + LE+Y P LG
Sbjct: 64 VFSQRQKLNWLNLELEKIWPYVNE--AASELIKSSVEPVLEQYTPAMLASLKFSKFTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + +L + + + +EL M + D + + + ++ LG + ++ G
Sbjct: 122 VAPQFTGVSILESESGPNGITMELEMQW----DGNPKIVLDVKTLLGVSLPIEVKNIG-- 175
Query: 188 VEGKVLVGVKFLRRWPFIDRLRVCFAEPPY-------FQMTVKPIFTHGLDVTEFPGIAG 240
GV L P +D CF Y T+K I G ++T PGI+
Sbjct: 176 -----FTGVFRLIFKPLVDEFP-CFGALSYSLREKKGLDFTLKVI---GGELTSIPGISD 226
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
+++ + A E ++ P V K PG++ +++K PV V+VV+A D+
Sbjct: 227 AIEETIRDAIEDSITWP------VRKIIPILPGDYSDLELK-PVGKLDVKVVQAKDLANK 279
Query: 301 DLNGLADPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357
D+ G +DPY + P RTK T +L+P W+E F + + ++ V D+
Sbjct: 280 DMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG 339
Query: 358 HFVDDTLGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLAITVLEESAKQGV 409
+G + +++L G+ D+W+ L ++++I G++ L + + G+
Sbjct: 340 VGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQRDTKNRGQVQLELLYCPLGKEGGL 399
Query: 410 DSPCD---GGTLNKEGMGNKEDQSNKEDIRESFANETTD---KG--SFSSVSSEKSPKV- 460
+P + T+ ++ + + + S+ D+++ ++ D +G S + V++E P V
Sbjct: 400 KNPFNPDYSLTILEKVLKPESEDSDATDMKKLVTSKKKDVIVRGVLSVTVVAAEDLPAVD 459
Query: 461 ----ADNFEPINIE 470
AD F I ++
Sbjct: 460 FMGKADAFVVITLK 473
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 49/345 (14%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLY------ 124
D+E WLN ++ MWP + I +KL F E +P A + HL
Sbjct: 191 DTERAEWLNKTVKHMWPFICQFI--EKL-------FRETIEP--AVRGANTHLSTFSFTK 239
Query: 125 --LGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMH 182
+G+ P + ++V ++ D ++L+L ++F+ ++ L +K + +
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEID--LEIKR-------YFCRAG 290
Query: 183 VTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGW 241
V + + G + V ++ + P + L + F P ++ +T ++ + PG+ G
Sbjct: 291 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEIN----WTGLTNLLDVPGLNGL 346
Query: 242 LDKLLSIAFEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
D ++ LV PN + V V + Q + P R+ +EA D++
Sbjct: 347 SDTIILDIISNYLVLPNRITVPLVSEVQIAQ------LRFPVPKGVLRIHFIEAQDLQGK 400
Query: 301 D------LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEV 353
D + G +DPY ++G F+++ ++ LSPKW+E + + ++ P L IE+
Sbjct: 401 DTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALV--YEHPGQELEIEL 458
Query: 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D+D DD LG I++ ++ + D W L + G+LHL +
Sbjct: 459 FDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRL 503
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 49/345 (14%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLY------ 124
D+E WLN ++ MWP + I +KL F E +P A + HL
Sbjct: 115 DTERAEWLNKTVKHMWPFICQFI--EKL-------FRETIEP--AVRGANAHLSTFSFTK 163
Query: 125 --LGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMH 182
+G+ P + ++V ++ D ++L+L ++F+ ++ L +K + +
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEID--LEIK-------RYFCRAG 214
Query: 183 VTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGW 241
V + + G + V ++ + P + L + F P ++ +T ++ + PG+ G
Sbjct: 215 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEIN----WTGLTNLLDIPGLNGL 270
Query: 242 LDKLLSIAFEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
D ++ LV PN + V V + Q + P R+ +EA D++
Sbjct: 271 SDTIILDIISNYLVLPNRITVPLVSEVQIAQ------LRFPIPKGVLRIHFIEAQDLQGK 324
Query: 301 D------LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEV 353
D + G +DPY ++G F++K ++ LSPKW+E + + ++ P L IE+
Sbjct: 325 DTYLKGLVKGKSDPYGIIRVGNQIFQSKVIKENLSPKWNEVYEALV--YEHPGQELEIEL 382
Query: 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D+D DD LG I++ ++ + D W L + G+LHL +
Sbjct: 383 FDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLKL 427
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q03640|TCB3_YEAST Tricalbin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 39/343 (11%)
Query: 17 FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVR 76
F WL +Y + FI + +V++ R R + + ++ + + + E+
Sbjct: 219 FFSWLFAYIGFSWWSMIFI-FLGTATVYNAEYTRFNRNIRDDLKRVTVEETLSDRVESTT 277
Query: 77 WLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKAL-VQHLYLGRNPPMLTEM 135
WLN + K W I M + SQ++ + P L P AL + LG P + +
Sbjct: 278 WLNSFLSKFWVIYMP-VLSQQVKDNVNPQ-LAGVAPGYGIDALAIDEFTLGSKAPTIKGI 335
Query: 136 RVLRQSNDDDHMVLELGMNF-LTADDMSAILAVKLRKR----------LGFGMWAK---M 181
+ ++ + +E+ +F T D+S + A + R++ LG +K +
Sbjct: 336 KSYTKTGKN---TVEMDWSFAFTPSDVSDMTATEAREKINPKISLGVTLGKSFVSKTMPI 392
Query: 182 HVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--THGLDVTEF-PGI 238
V ++V GK+ + V+F + +P I + + EPP +KPI T GLDV F PG+
Sbjct: 393 LVEDINVAGKMRIKVEFGKAFPNIKIVSLQLLEPPLIDFALKPIGGDTLGLDVMSFLPGL 452
Query: 239 AGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMK 298
++ +++ L PN L ++V+ + Q KE + V + A +K
Sbjct: 453 KSFVKNIINSNIGPMLFPPNHLDINVEDIMAAQS--------KEAIGVLAVTIASADSLK 504
Query: 299 PSD-LNGLADPYVKGQL------GPYRFRTKTQRKTLSPKWHE 334
SD + DPY+ RT + +P+W+E
Sbjct: 505 GSDFITNTVDPYIVMTTEDAVPGTDEEVRTSIKSNVKNPRWNE 547
|
May play a role in membrane trafficking. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
+V VVEA ++ DLNG +DPYV+ QLG R RTK +K L+PKW E+F+ + D +
Sbjct: 4 QVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVD--DLND 61
Query: 348 VLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDM---WIPLQNIKIG 392
LV+ V D+D +F DD +G +++S + D + + W PL K G
Sbjct: 62 ELVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKG 110
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 777 | ||||||
| 255578544 | 765 | conserved hypothetical protein [Ricinus | 0.963 | 0.979 | 0.671 | 0.0 | |
| 359494388 | 771 | PREDICTED: C2 domain-containing protein | 0.949 | 0.957 | 0.632 | 0.0 | |
| 297834336 | 742 | integral membrane single C2 domain prote | 0.882 | 0.924 | 0.656 | 0.0 | |
| 356549572 | 766 | PREDICTED: C2 domain-containing protein | 0.849 | 0.861 | 0.671 | 0.0 | |
| 224061351 | 729 | integral membrane single C2 domain prote | 0.893 | 0.951 | 0.650 | 0.0 | |
| 356549574 | 757 | PREDICTED: C2 domain-containing protein | 0.836 | 0.858 | 0.664 | 0.0 | |
| 449456673 | 730 | PREDICTED: C2 domain-containing protein | 0.840 | 0.894 | 0.676 | 0.0 | |
| 449503642 | 731 | PREDICTED: C2 domain-containing protein | 0.840 | 0.893 | 0.676 | 0.0 | |
| 18404532 | 751 | calcium-dependent lipid-binding domain [ | 0.927 | 0.960 | 0.604 | 0.0 | |
| 15451210 | 751 | Unknown protein [Arabidopsis thaliana] | 0.927 | 0.960 | 0.603 | 0.0 |
| >gi|255578544|ref|XP_002530135.1| conserved hypothetical protein [Ricinus communis] gi|223530360|gb|EEF32251.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/767 (67%), Positives = 624/767 (81%), Gaps = 18/767 (2%)
Query: 1 MSLMEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEER 60
M + E SIMHHVGI+LF+LWLLSYF+RCHP A+FISLIYLY VH+RYVMRLRRK++F+ER
Sbjct: 1 MDITETSIMHHVGIILFVLWLLSYFNRCHPFAFFISLIYLYLVHERYVMRLRRKLQFQER 60
Query: 61 KNSFQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALV 120
K + Q+R L DSE+VRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+V
Sbjct: 61 KQANQKRALSDSESVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVV 120
Query: 121 QHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK 180
QH+YLGR PP+ TEMRVLR+ DDH+VLELGMNF TADDMS++LAVKLR+RLGFGMWAK
Sbjct: 121 QHMYLGRTPPLFTEMRVLRECTGDDHLVLELGMNFCTADDMSSVLAVKLRRRLGFGMWAK 180
Query: 181 MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAG 240
+H+T MHVEGKVL+GVKFL WPF+ RLR+CFAEPPYFQMTVKP+FTHGLDVTE PGIAG
Sbjct: 181 LHMTAMHVEGKVLIGVKFLSHWPFLGRLRICFAEPPYFQMTVKPVFTHGLDVTELPGIAG 240
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
WLDKLLS+AFEQTLV+PNMLVVD++KFASP+P NWFSVD KEP+AY +VEV+EA+DMKPS
Sbjct: 241 WLDKLLSVAFEQTLVQPNMLVVDMEKFASPKPENWFSVDEKEPIAYVKVEVMEATDMKPS 300
Query: 301 DLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360
DLNGLADPYVKGQLG Y+FRTK QRKTL+PKW EEF IPI TWDSPNVLVIEVRDKDHFV
Sbjct: 301 DLNGLADPYVKGQLGSYKFRTKIQRKTLAPKWQEEFKIPICTWDSPNVLVIEVRDKDHFV 360
Query: 361 DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNK 420
DD+LGDC INI+DLRDG RHDMW+PLQNIKIGRLHLAITVLEE+AK G + DG TL+K
Sbjct: 361 DDSLGDCIININDLRDGGRHDMWLPLQNIKIGRLHLAITVLEENAKVGANI-FDGDTLSK 419
Query: 421 EGMGNKEDQSNKEDIRESFANETTDKGSF-SSVSSEKSPKVADNFEPINIEGQQETGIWV 479
E M ++SF NET ++ SF SS +S+KSP+V DN EPINIEGQ++TGIWV
Sbjct: 420 EEM------------QDSFINETANRASFSSSTASDKSPRVIDNLEPINIEGQEQTGIWV 467
Query: 480 HQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGK-- 537
HQPG+EV+QTWEPRKGK+ RLD+ RRVP SF S+N SG LNNDSSS+D+N +GK
Sbjct: 468 HQPGNEVSQTWEPRKGKSMRLDSRARRVPGDSFGSSNLPVSGPLNNDSSSSDENVDGKSS 527
Query: 538 -NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGS 596
N ++RGLRKI S+F R S+KED GS +AV SP AN++AVN K++GV F+VEDSLSGS
Sbjct: 528 MNRVQRGLRKISSVFHRGSKKEDSMGSNEDAVQSPYANIKAVNQKEIGVTFVVEDSLSGS 587
Query: 597 IPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
VK + +N+S D PE+P +G+VK AKSI+KHAEK ARSI+H SRK S K RG +
Sbjct: 588 TVVKNSNAVNLSPDGIAPETPGKGNVKDRAKSILKHAEKSARSIRHVLSRKGSRKSRGDS 647
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPE 716
S VTE E+Y +S+SSDDE L SS++E+IP P ++ DD ++ + + S +
Sbjct: 648 SVVTELEIYPESESSDDEELSSSQVEKIPIVSCPTTNTCGNDDADKVEDNVVQVDSVELV 707
Query: 717 ADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGDLK 763
D GQ +KV+ ++ E D+++V+ G ++ + EF KP+LS+ L+
Sbjct: 708 TDTEGQMNKVNVEALESGDENKVSSFSGGNELE-EFSKPQLSDEKLE 753
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494388|ref|XP_002267637.2| PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 960 bits (2482), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/760 (63%), Positives = 587/760 (77%), Gaps = 22/760 (2%)
Query: 1 MSLMEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEER 60
MSL EISI+HHV +VL LWLLS HP AYF+SLIYLY VH++Y+MR+RRK++F+ER
Sbjct: 1 MSLTEISIIHHVAMVLIFLWLLSSLSWNHPIAYFVSLIYLYQVHEQYIMRMRRKLQFKER 60
Query: 61 KNSFQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALV 120
K + ++RVL DSE+VRWLNHA+EK+WPICMEQI SQK+LLPIIPWFLEKYKPWTAKKA+V
Sbjct: 61 KEANRKRVLSDSESVRWLNHAVEKIWPICMEQIVSQKILLPIIPWFLEKYKPWTAKKAIV 120
Query: 121 QHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK 180
QHLY+GRNPPM TEMRV+R+S DDDH+VL LGMNFLTADDMSAILA+KLR+RLGFGMWAK
Sbjct: 121 QHLYMGRNPPMFTEMRVIRESTDDDHLVLGLGMNFLTADDMSAILAIKLRRRLGFGMWAK 180
Query: 181 MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAG 240
+H+TGMHVEGKVL+GVKF+R WPFI RLRVCFAEPPYFQMTVKPIFTHGLDVTE PGIAG
Sbjct: 181 LHLTGMHVEGKVLIGVKFIRNWPFIGRLRVCFAEPPYFQMTVKPIFTHGLDVTELPGIAG 240
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
WLDKLL++AFEQTLVEPNMLVVDV+KF SP +WFSVD KEP+A ARVEV+EASDMKPS
Sbjct: 241 WLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVDEKEPIALARVEVLEASDMKPS 300
Query: 301 DLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360
DLNGLADPYVKG+LGPYRF TK Q+KTL+PKW+EEF IPI +W+ PN+LVIEVRDKDHFV
Sbjct: 301 DLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIPICSWELPNMLVIEVRDKDHFV 360
Query: 361 DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNK 420
DDTLG C++NI+DLR GQRHDMW+PL+NIK+GRLHLAITVLE++ ++ D D L+
Sbjct: 361 DDTLGACSLNINDLRGGQRHDMWLPLKNIKMGRLHLAITVLEDNEEEA-DQLDDEEILDH 419
Query: 421 EGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVH 480
+ + E+ ++ED R S A ET+ + SFSS +SE++ KVAD +EPIN+EGQQETGIWVH
Sbjct: 420 KTL--DEEDKDQEDKRNSLARETSLRDSFSS-ASERTSKVADKYEPINLEGQQETGIWVH 476
Query: 481 QPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGK--- 537
PGSEV+QTWEPRKGK+R +D+ + N SF S NS A GS +ND SSTD+N EGK
Sbjct: 477 HPGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIAYGSFHNDGSSTDENSEGKKAQ 536
Query: 538 --NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSG 595
N++RRGL KIG++F RN RKED++ +IGE +PSP +N++ VN+K +GV+FIVED+LS
Sbjct: 537 AMNTVRRGLEKIGTVFHRN-RKEDNSSNIGEIIPSPPSNIKEVNSKAIGVRFIVEDNLSK 595
Query: 596 SIPVKATK-DINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRG 654
+ K D + + SG ESPS+G+VK MAK +K A K AR IKHA SRK S K +G
Sbjct: 596 PSSAEVPKEDRSPGHEGSGTESPSQGNVKDMAKCFLKQAGKSARGIKHALSRKGSRKSQG 655
Query: 655 GTS-PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSS 713
PV + S S+ +S +E IP P+SS +D KEQ+ +
Sbjct: 656 DQEIPV----FDSSDEDSASSSVCTSTMEAIPIISTPISSHG--NDPVAHKEQVVLIGA- 708
Query: 714 DPEADILGQTDKVSADSE--EKKDDDEVNKTEGVDDGQIE 751
P A I + D E E D+ + +EG D +E
Sbjct: 709 -PAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDELVE 747
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834336|ref|XP_002885050.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata] gi|297330890|gb|EFH61309.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/730 (65%), Positives = 571/730 (78%), Gaps = 44/730 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HHV IVL LW+LSY +R H YF+SL+YLY VH+RYVMRLR+K++FEERK +
Sbjct: 1 MECSVIHHVVIVLLFLWVLSYLNRSHALFYFLSLVYLYLVHERYVMRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRWLNHA+EK+WPICMEQIASQK+L PIIPWFL+KY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWLNHAMEKIWPICMEQIASQKILRPIIPWFLDKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPP+LT++RVLRQS DDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YLGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPI THGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAALPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSVDVKEPVAYARVEVVEASDMKPSDL 302
KLLS+AFEQTLVEPNMLVVD++KF SP+PG NWF VD KEPVA+A VEVVEASD+KPSDL
Sbjct: 241 KLLSVAFEQTLVEPNMLVVDMEKFVSPEPGENWFFVDEKEPVAHALVEVVEASDVKPSDL 300
Query: 303 NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362
NGLADPYVKGQLG YRF+TK KTL+PKW EEF IPI TWDSPN+L IEV+DKD F DD
Sbjct: 301 NGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSPNILNIEVQDKDRFTDD 360
Query: 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEG 422
+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAITVLE AK D P +G T+
Sbjct: 361 SLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAITVLENEAKLN-DDPFEGVTI---- 415
Query: 423 MGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQP 482
+KED+ SFA++ T KGSFSSV S+KSP+V DN EPINIEGQ+ETGIWVHQP
Sbjct: 416 --------SKEDMWASFASDVTSKGSFSSVVSDKSPRVPDNMEPINIEGQEETGIWVHQP 467
Query: 483 GSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNSIR- 541
G+EV+Q WEPRKGKNR LD +R S S AS S NN+SSSTD+NQEGK++++
Sbjct: 468 GTEVSQIWEPRKGKNRCLDNEIR-----GAGSVRSTASTSPNNESSSTDENQEGKSTMKS 522
Query: 542 --RGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSI 597
RGL+KIG +F RN +KE+ H GSI E + SPR NL+A+N KDVGVKFIVED LSG +
Sbjct: 523 VGRGLKKIGLVFHRNGKKEECHHTGSIEEDIRSPRINLKALNQKDVGVKFIVEDRLSGPL 582
Query: 598 PVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGG-T 656
++ K N S+ +S +GH+K +AKSI+KHAEK AR +KHAFSRK S K R
Sbjct: 583 TGRSPKGENFGSE----DSQHKGHMKDVAKSILKHAEKSARHLKHAFSRKGSRKSRDDEC 638
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSC-------STRDDNCDTKEQITR 709
S V+E++ ++SDDES SS + D P ++ + DDN +T +
Sbjct: 639 STVSEQDSECQHENSDDESAFSS----VQDLGTPRTAKLEGKSVRAGEDDNVNT----SA 690
Query: 710 TSSSDPEADI 719
S D +ADI
Sbjct: 691 NSKDDSKADI 700
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549572|ref|XP_003543166.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2407), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/682 (67%), Positives = 552/682 (80%), Gaps = 22/682 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SI+HH GIVL LW+LS F+ CH AYF++LIYL+ VH+RYV RLR+K++FEERK +
Sbjct: 1 MEVSILHHAGIVLIGLWILSAFNWCHTVAYFVALIYLFLVHERYVTRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+E +WPICME I SQK+L PIIPWFLEKYKPWTAK+A+VQHL
Sbjct: 61 NQRRVLSDSETVRWLNHAVENIWPICMENIVSQKILFPIIPWFLEKYKPWTAKEAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP++TE+RVLRQS DDDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMWAK+H+
Sbjct: 121 YMGRNPPLITEVRVLRQS-DDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHI 179
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFL WPFI RLRVCF EPPYFQMTVKP+FTHGLDVTE PGIAGWLD
Sbjct: 180 TGMHVEGKVLVGVKFLPTWPFIGRLRVCFVEPPYFQMTVKPMFTHGLDVTELPGIAGWLD 239
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVDV+KF SPQ +WF V+ KEPVAYA+VEV+EAS+MKPSDLN
Sbjct: 240 KLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVNEKEPVAYAKVEVIEASEMKPSDLN 299
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +PI TW+S NVLVI VRDKDHF DD
Sbjct: 300 GLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVPIITWESDNVLVIAVRDKDHFYDDI 359
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT+LE++ K GVD+ T ++E M
Sbjct: 360 LGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAITILEDNGK-GVDTT----TRDQETM 414
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
+E + + E ANETTD SFS V EKS K+ADN+EPI+I+GQ+ETG+WVH PG
Sbjct: 415 DFEERKISFE------ANETTDNSSFSPVPPEKSEKLADNYEPIDIDGQKETGVWVHHPG 468
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SI 540
SEV+Q WEPRKGK+RRLDT + PN S S NS SGSLNNDSSS D+N E K+ ++
Sbjct: 469 SEVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTVSGSLNNDSSSPDNNPEEKHRMRTV 528
Query: 541 RRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKD-VGVKFIVEDSLSGSIPV 599
R+GL KIGS+F R+ R+E +GS+ E + SP N+R+ N K + VKF++++++SG
Sbjct: 529 RKGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIRSENAKGMIAVKFVMDENISGFQTG 588
Query: 600 KATKDINVSSDESGPESP--SRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 657
K + S++ SGPESP ++G+VK MAK+I KHAEK AR ++H S K + G S
Sbjct: 589 KVQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKHAEKSARGLRHVLSCKSRKLKFKGES 647
Query: 658 P-VTERELYVDSDSSDDESLPS 678
P V ERE +SDSSD+ES+ +
Sbjct: 648 PTVPEREH--ESDSSDEESIAA 667
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061351|ref|XP_002300437.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222847695|gb|EEE85242.1| integral membrane single C2 domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/733 (65%), Positives = 577/733 (78%), Gaps = 39/733 (5%)
Query: 6 ISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQ 65
+SI+HH GIVLFLLWLLS F+RCHP A+ +SLIYL+ VH+RYVM+LR+K+++EERK ++Q
Sbjct: 1 MSIIHHAGIVLFLLWLLSSFNRCHPIAFILSLIYLFLVHERYVMKLRKKLQYEERKQAYQ 60
Query: 66 RRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYL 125
+RVL DSETVRWLNH +EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAK+A+V+H+YL
Sbjct: 61 KRVLTDSETVRWLNHTVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEAVVRHMYL 120
Query: 126 GRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTG 185
GRNPP+ TEMRV RQS DDH+VLELGMNF TADDMSAIL++KLR RLGFGMWA+MH+TG
Sbjct: 121 GRNPPLFTEMRV-RQSTGDDHLVLELGMNFCTADDMSAILSIKLRNRLGFGMWARMHMTG 179
Query: 186 MHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKL 245
+HVEGKVL+GVKFL WPF+ RLRVCFAEPPYFQMTVKPIF GLDVTE PGIAGWLDKL
Sbjct: 180 IHVEGKVLIGVKFLPNWPFLGRLRVCFAEPPYFQMTVKPIFATGLDVTELPGIAGWLDKL 239
Query: 246 LSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGL 305
LS+AFEQTLV+PNMLVVD++KF SP +WFSVD KEPVAYA+VEV+EASDMKPSDLNGL
Sbjct: 240 LSVAFEQTLVQPNMLVVDMEKFVSPGSEDWFSVDEKEPVAYAKVEVIEASDMKPSDLNGL 299
Query: 306 ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365
ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF IPI TW+ PNVL I+VRDKD DD LG
Sbjct: 300 ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFKIPICTWELPNVLAIDVRDKDPLFDDALG 359
Query: 366 DCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGN 425
CT++I++L+D RHDMW+PLQNIK+GRLHLAITVLE++A+ G SP DG TL
Sbjct: 360 VCTVDINELKDLGRHDMWLPLQNIKMGRLHLAITVLEQNAQGGDCSP-DGDTL------- 411
Query: 426 KEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSE 485
KE I++SF ++T ++ SFSS S+EKS +V DNFEPIN+EGQ+ETGIWVH PGSE
Sbjct: 412 -----TKEQIQDSFVSDTANRASFSSESTEKS-RVPDNFEPINVEGQEETGIWVHHPGSE 465
Query: 486 VAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNS---IRR 542
V QTWEPRKGK SF S +SA SG LN DSSS ++N EG+N +R
Sbjct: 466 VPQTWEPRKGKT-----------TNSFIS-HSAVSGPLNIDSSSGEENAEGENKRKRFKR 513
Query: 543 GLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKAT 602
GL+KIGS+F RN++ ED+ SIGE VPSP N++A N +++GVKF+VEDSL S+P
Sbjct: 514 GLQKIGSVFHRNAKNEDNLSSIGENVPSPYVNIKATNQREIGVKFVVEDSL--SVPNSGC 571
Query: 603 -KDINVSSDESGPESPS-----RGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
++N+ S++S PESP G+ KG+AKSI+KHAEK ARSIKHA SR S++
Sbjct: 572 LSEVNLGSEKSSPESPQGGNAKGGNAKGIAKSILKHAEKSARSIKHALSRTGSSRSLADP 631
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPE 716
S VTER++Y +SDSSDD+S S + + + PIP SS DD+ E I + S+P
Sbjct: 632 SVVTERDIYPESDSSDDQSRSSPQTKPVVSSPIP-SSTPCNDDSVKPMENIIESGPSEPS 690
Query: 717 ADILGQTDKVSAD 729
+ GQ +KV +
Sbjct: 691 INSGGQMNKVDVE 703
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549574|ref|XP_003543167.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/683 (66%), Positives = 546/683 (79%), Gaps = 33/683 (4%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SI+HH GIVL LW+LS F+ CH AYF++LIYL+ VH+RYV RLR+K++FEERK +
Sbjct: 1 MEVSILHHAGIVLIGLWILSAFNWCHTVAYFVALIYLFLVHERYVTRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+E +WPICME I SQK+L PIIPWFLEKYKPWTAK+A+VQHL
Sbjct: 61 NQRRVLSDSETVRWLNHAVENIWPICMENIVSQKILFPIIPWFLEKYKPWTAKEAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP++TE+RVLRQS DDDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMWAK+H+
Sbjct: 121 YMGRNPPLITEVRVLRQS-DDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHI 179
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFL WPFI RLRVCF EPPYFQMTVKP+FTHGLDVTE PGIAGWLD
Sbjct: 180 TGMHVEGKVLVGVKFLPTWPFIGRLRVCFVEPPYFQMTVKPMFTHGLDVTELPGIAGWLD 239
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVDV+KF SPQ +WF V+ KEPVAYA+VEV+EAS+MKPSDLN
Sbjct: 240 KLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVNEKEPVAYAKVEVIEASEMKPSDLN 299
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +PI TW+S NVLVI VRDKDHF DD
Sbjct: 300 GLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVPIITWESDNVLVIAVRDKDHFYDDI 359
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT+LE++ K+ +D
Sbjct: 360 LGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAITILEDNGKETMDF------------ 407
Query: 424 GNKEDQSNKEDIRESF-ANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQP 482
E+ + SF ANETTD SFS V EKS K+ADN+EPI+I+GQ+ETG+WVH P
Sbjct: 408 ---------EERKISFEANETTDNSSFSPVPPEKSEKLADNYEPIDIDGQKETGVWVHHP 458
Query: 483 GSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---S 539
GSEV+Q WEPRKGK+RRLDT + PN S S NS SGSLNNDSSS D+N E K+ +
Sbjct: 459 GSEVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTVSGSLNNDSSSPDNNPEEKHRMRT 518
Query: 540 IRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKD-VGVKFIVEDSLSGSIP 598
+R+GL KIGS+F R+ R+E +GS+ E + SP N+R+ N K + VKF++++++SG
Sbjct: 519 VRKGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIRSENAKGMIAVKFVMDENISGFQT 578
Query: 599 VKATKDINVSSDESGPESP--SRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
K + S++ SGPESP ++G+VK MAK+I KHAEK AR ++H S K + G
Sbjct: 579 GKVQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKHAEKSARGLRHVLSCKSRKLKFKGE 637
Query: 657 SP-VTERELYVDSDSSDDESLPS 678
SP V ERE +SDSSD+ES+ +
Sbjct: 638 SPTVPEREH--ESDSSDEESIAA 658
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456673|ref|XP_004146073.1| PREDICTED: C2 domain-containing protein At1g53590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/676 (67%), Positives = 543/676 (80%), Gaps = 23/676 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SIM HVG VLFLLWLLS F+ CH AAYFISLIYLY VH+R+ ++LRRK++FEERK +
Sbjct: 1 MEVSIMIHVGFVLFLLWLLSAFNCCHVAAYFISLIYLYLVHERFFLKLRRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+VQHL
Sbjct: 61 NQRRVLTDSETVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPPM TEMRVLRQ ++DDH+VLELGMNFLTADDMSAIL VKLRKRLGFGMWAK+H+
Sbjct: 121 YLGRNPPMFTEMRVLRQPSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFLR WP++ R+R+CFAEPPYFQMTVKPIFTHGLDVTE PGIAGWLD
Sbjct: 181 TGMHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVD++KF SPQP NWFSV+VKEPVAY VEVVE +DMKPSDLN
Sbjct: 241 KLLSIAFEQTLVEPNMLVVDMEKFISPQPENWFSVNVKEPVAYVIVEVVEGADMKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQLGPYRFRTK QRKTL P+W EEF IPI TW+S NVL IEVRDKD FVDD
Sbjct: 301 GLADPYVKGQLGPYRFRTKIQRKTLCPQWREEFKIPIVTWESENVLAIEVRDKDTFVDDV 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++ I+DLRDG+RHD+W+PL+NI+ GRLHL ITV E+ K+ + PC TLN
Sbjct: 361 LGNCSVCIADLRDGRRHDIWLPLENIRTGRLHLGITVFEDR-KKVEEYPCQAETLNV--- 416
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
++ + S K + + DK S VS E K DNFEPI+++GQ+ETGIWVH+PG
Sbjct: 417 -DENEVSPKSETK-------NDKDSILPVSMEPE-KGIDNFEPIDVKGQKETGIWVHRPG 467
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SI 540
SE ++TWEPRKG +RRLDT +RR PN S +S S NDSSSTD++ E K+ S+
Sbjct: 468 SEASKTWEPRKGPSRRLDTKIRREPN---ESVSSGEIKSCTNDSSSTDESLEEKHRKISV 524
Query: 541 RRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPR-ANLRAVNTKDVGVKFIVEDSLSGSIPV 599
RRGLRK+ S+F R+ R E+ +GS+ E SP+ N+RA N + G+K I+ D++S S
Sbjct: 525 RRGLRKLSSVFHRSPRDEERSGSLVEPAKSPQYTNVRAANAER-GIKVILVDNIS-STAD 582
Query: 600 KATKDINVSSDESGPESPSR-GHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSP 658
K +K+ S+D S ESP + G+VKGMAKSI + AEK ARSI+HAFSRK S + + +
Sbjct: 583 KVSKEGKSSNDGSDSESPGKGGNVKGMAKSIFRQAEKSARSIRHAFSRKGSRRFQIDSLG 642
Query: 659 VTERELYVDSDSSDDE 674
+ ER+ V+S+SSDDE
Sbjct: 643 MNERDAAVESESSDDE 658
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503642|ref|XP_004162104.1| PREDICTED: C2 domain-containing protein At1g53590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2368), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/676 (67%), Positives = 543/676 (80%), Gaps = 23/676 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SIM HVG VLFLLWLLS F+ CH AAYFISLIYLY VH+R+ ++LRRK++FEERK +
Sbjct: 1 MEVSIMIHVGFVLFLLWLLSAFNCCHVAAYFISLIYLYLVHERFFLKLRRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+VQHL
Sbjct: 61 NQRRVLTDSETVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPPM TEMRVLRQ ++DDH+VLELGMNFLTADDMSAIL VKLRKRLGFGMWAK+H+
Sbjct: 121 YLGRNPPMFTEMRVLRQPSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFLR WP++ R+R+CFAEPPYFQMTVKPIFTHGLDVTE PGIAGWLD
Sbjct: 181 TGMHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVD++KF SPQP NWFSV+VKEPVAY VEVVE +DMKPSDLN
Sbjct: 241 KLLSIAFEQTLVEPNMLVVDMEKFISPQPENWFSVNVKEPVAYVIVEVVEGADMKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQLGPYRFRTK QRKTL P+W EEF IPI TW+S NVL IEVRDKD FVDD
Sbjct: 301 GLADPYVKGQLGPYRFRTKIQRKTLCPQWREEFKIPIVTWESENVLAIEVRDKDTFVDDV 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++ I+DLRDG+RHD+W+PL+NI+ GRLHL ITV E+ K+ + PC TLN
Sbjct: 361 LGNCSVCIADLRDGRRHDIWLPLENIRTGRLHLGITVFEDR-KKVEEYPCQAETLNV--- 416
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
++ + S K + + DK S VS E K DNFEPI+++GQ+ETGIWVH+PG
Sbjct: 417 -DENEVSPKSETK-------NDKDSILPVSMEPE-KGIDNFEPIDVKGQKETGIWVHRPG 467
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SI 540
SE ++TWEPRKG +RRLDT +RR PN S +S S NDSSSTD++ E K+ S+
Sbjct: 468 SEASKTWEPRKGPSRRLDTKIRREPN---ESVSSGEIKSCTNDSSSTDESLEEKHRKISV 524
Query: 541 RRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPR-ANLRAVNTKDVGVKFIVEDSLSGSIPV 599
RRGLRK+ S+F R+ R E+ +GS+ E SP+ N+RA N + G+K I+ D++S S
Sbjct: 525 RRGLRKLSSVFHRSPRDEERSGSLVEPAKSPQYTNVRAANAER-GIKVILVDNIS-STAD 582
Query: 600 KATKDINVSSDESGPESPSR-GHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSP 658
K +K+ S+D S ESP + G+VKGMAKSI + AEK ARSI+HAFSRK S + + +
Sbjct: 583 KVSKEGKSSNDGSDSESPGKGGNVKGMAKSIFRQAEKSARSIRHAFSRKGSRRFQIDSLG 642
Query: 659 VTERELYVDSDSSDDE 674
+ ER+ V+S+SSDDE
Sbjct: 643 MNERDAAVESESSDDE 658
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18404532|ref|NP_564637.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana] gi|332278165|sp|Q93XX4.2|C2D61_ARATH RecName: Full=C2 domain-containing protein At1g53590; AltName: Full=N-terminal-TM-C2 domain type 6 protein 1; Short=NTMC2TYPE6.1 gi|332194846|gb|AEE32967.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/772 (60%), Positives = 567/772 (73%), Gaps = 51/772 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSS-DDPL---------- 409
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG
Sbjct: 410 --KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPG 464
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---S 539
+EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S
Sbjct: 465 AEVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKS 514
Query: 540 IRRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGS 596
+ RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG
Sbjct: 515 VGRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGP 574
Query: 597 IPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
+ K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 575 LSGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGH 630
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITR 709
+ S D+ + ++ + P + TRD N +
Sbjct: 631 KEIVPESDSGTDSESSDDDDAFTCVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLA 686
Query: 710 TSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 761
T+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 687 TAKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15451210|gb|AAK96876.1| Unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/772 (60%), Positives = 567/772 (73%), Gaps = 51/772 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWP++ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPYLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSS-DDPL---------- 409
Query: 424 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG
Sbjct: 410 --KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPG 464
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---S 539
+EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S
Sbjct: 465 AEVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKS 514
Query: 540 IRRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGS 596
+ RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG
Sbjct: 515 VGRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGP 574
Query: 597 IPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT 656
+ K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 575 LSGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGH 630
Query: 657 SPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITR 709
+ S D+ + ++ + P + TRD N +
Sbjct: 631 KEIVPESDSGTDSESSDDDDAFTYVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLA 686
Query: 710 TSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 761
T+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 687 TAKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 777 | ||||||
| TAIR|locus:2089601 | 737 | NTMC2T6.2 [Arabidopsis thalian | 0.824 | 0.869 | 0.646 | 3.3e-230 | |
| TAIR|locus:2024912 | 751 | NTMC2T6.1 [Arabidopsis thalian | 0.630 | 0.652 | 0.709 | 1.2e-200 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.445 | 0.617 | 0.234 | 1e-19 | |
| TAIR|locus:2095062 | 815 | ATSYTF "AT3G18370" [Arabidopsi | 0.135 | 0.128 | 0.345 | 3.8e-18 | |
| ASPGD|ASPL0000040774 | 1506 | AN9149 [Emericella nidulans (t | 0.476 | 0.245 | 0.239 | 4.5e-17 | |
| ZFIN|ZDB-GENE-050809-35 | 861 | esyt3 "extended synaptotagmin- | 0.389 | 0.351 | 0.237 | 1.7e-16 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.396 | 0.541 | 0.235 | 4.6e-16 | |
| MGI|MGI:1098699 | 891 | Esyt3 "extended synaptotagmin- | 0.437 | 0.381 | 0.266 | 6.4e-16 | |
| UNIPROTKB|A0FGR9 | 886 | ESYT3 "Extended synaptotagmin- | 0.440 | 0.386 | 0.257 | 2.2e-15 | |
| UNIPROTKB|G4MRL6 | 1493 | MGG_09947 "Tricalbin-1" [Magna | 0.460 | 0.239 | 0.215 | 2.1e-14 |
| TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2221 (786.9 bits), Expect = 3.3e-230, P = 3.3e-230
Identities = 429/664 (64%), Positives = 513/664 (77%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HHV IVL LLW+LSY +R H Y +SL+YLY VH+RYVMRLR+K++FEERK +
Sbjct: 1 MECSVIHHVVIVLLLLWVLSYLNRSHAVFYVLSLVYLYLVHERYVMRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRWLNHA+E++WPICMEQIASQK+L PIIPWFL+KY+PWTAKK ++QHL
Sbjct: 61 NQRRVLSDSESVRWLNHAVERIWPICMEQIASQKILRPIIPWFLDKYRPWTAKKVVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPP+LT++RVLRQS DDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YLGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPI THGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSVDVKEPVAYARVEVVEASDMKPSDL 302
KLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF VD KEPVA+A VEVVEA D+KPSDL
Sbjct: 241 KLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFVDEKEPVAHALVEVVEACDVKPSDL 300
Query: 303 NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362
NGLADPYVKGQLG YRF+TK KTL+PKW EEF IPI TWDS N+L IEV+DKD F DD
Sbjct: 301 NGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSANILNIEVQDKDRFSDD 360
Query: 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEG 422
+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAITVLE+ AK D P +G T+ KE
Sbjct: 361 SLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAITVLEDEAKLN-DDPFEGVTICKE- 418
Query: 423 MGNKEDQSNKEDIRESFANETTDKGXXXXXXXXXXPKVADNFEPINIEGQQETGIWVHQP 482
D+ SFA++ T+KG P+V DN EPINIEGQ+ETGIWVHQP
Sbjct: 419 -----------DMWASFASDVTNKGSFSSVVSDKSPRVPDNMEPINIEGQEETGIWVHQP 467
Query: 483 GSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTXXXXXXXXXXXXXXXXXXQEGKNSIRR 542
G+EV+Q WEPRKGK+R LD ++ GS ST + S+
Sbjct: 468 GTEVSQIWEPRKGKSRCLDNKIQCA--GSVRSTASTSPNNESSSTDKNQEGKSEMKSVGW 525
Query: 543 GLRKIGSMFQRNSRKED--HAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVK 600
GL+KIG +F +N +KE+ H GSI E + SPR NL+A+N KDVGVKFIVED LSG + +
Sbjct: 526 GLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRINLKALNQKDVGVKFIVEDRLSGPLTGR 585
Query: 601 ATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT-SPV 659
+ K + S++S + H+K +AKSI+KHAEK AR +KHAFS K S K R S V
Sbjct: 586 SPKGESFDSEDS----QHKRHMKDVAKSILKHAEKSARHLKHAFSHKGSRKSRDDECSTV 641
Query: 660 TERE 663
+E++
Sbjct: 642 SEQD 645
|
|
| TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1942 (688.7 bits), Expect = 1.2e-200, P = 1.2e-200
Identities = 359/506 (70%), Positives = 424/506 (83%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGM 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSS-DDPL---------- 409
Query: 424 GNKEDQSNKEDIRESFANETTDKGXXXXXXXXXXPKVADNFEPINIEGQQETGIWVHQPG 483
K+ + NKEDI+ SFA++TT+ G P V DNFEPI I+GQ+ET IWV +PG
Sbjct: 410 --KKAKLNKEDIQTSFASDTTNLGSFSSDKS---PSVVDNFEPIKIDGQEETAIWVQKPG 464
Query: 484 SEVAQTWEPRKGKNRRLDTLVRRVPN 509
+EV+Q WEPRKGK+RRLD+ ++R PN
Sbjct: 465 AEVSQIWEPRKGKSRRLDSQIQRTPN 490
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 89/380 (23%), Positives = 177/380 (46%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + + WLNH + K+WP +++ AS+ + + P LE+Y+P L LG
Sbjct: 64 VFSERQKLTWLNHHLTKIWPY-VDEAASELIKASVEP-VLEQYRPAIVASLTFSKLTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK-MHVTGM 186
P T + V+ D + + LEL M + + + +L VK + + K + TG+
Sbjct: 122 VAPQFTGVSVI--DGDKNGITLELDMQW--DGNPNIVLGVKTLVGVSLPIQVKNIGFTGV 177
Query: 187 HVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
L+ + +P + V E T+K + G D++ PG++ +++ +
Sbjct: 178 FR----LIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVV---GGDISAIPGLSEAIEETI 230
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P V+ + PG++ +++K PV V++V+A ++ DL G +
Sbjct: 231 RDAVEDSITWPVRKVIPII------PGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKS 283
Query: 307 DPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDD 362
DP+ K + P R +TK T L+P W+E F + + + LV+ + D + +
Sbjct: 284 DPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQH-LVVRIYDDEGVQASE 342
Query: 363 TLGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLAITVLEESAKQGVDSPCD 414
+G I + +L G+ D+W+ L ++++I G +HL + + + G+ +P
Sbjct: 343 LIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFV 402
Query: 415 GGTLNKEGMGNKEDQSNKED 434
++ K D +++E+
Sbjct: 403 TSSMTSLERVLKNDTTDEEN 422
|
|
| TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 38/110 (34%), Positives = 62/110 (56%)
Query: 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350
+VEA D+ +D+ G +DPYV+ Q G + RTK KTL PKW++ P D + L
Sbjct: 611 LVEARDLVAADIRGTSDPYVRVQYGEKKQRTKVIYKTLQPKWNQTMEFP----DDGSSLE 666
Query: 351 IEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399
+ V+D + + ++G+C + L+ + D WI LQ +K G +H+ +T
Sbjct: 667 LHVKDYNTLLPTSSIGNCVVEYQGLKPNETADKWIILQGVKHGEVHVRVT 716
|
|
| ASPGD|ASPL0000040774 AN9149 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 97/405 (23%), Positives = 178/405 (43%)
Query: 10 HHVGIVLFLL---WLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQR 66
H+ G+++F W+++ A FI + + + + R+RR + + ++
Sbjct: 178 HNAGVIVFACLSSWIVAVLGG-GLAWVFIIMAACGTYYRTSIRRVRRNFRDDVNREMAKQ 236
Query: 67 RVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLG 126
R+ D+E++ W+N + K WPI + ++ + L P ++ LG
Sbjct: 237 RLETDTESLEWINSFLVKFWPIYAPVMCDT--IINSVDQVLSTATPAFLDSLRLKTFILG 294
Query: 127 RNPPMLTEMRVLRQSNDDDHMVLELGMNFLTAD--DMSAILA-------VKLRKRLGFGM 177
PP L ++ ++ + D ++++ +F D D++A V L R+G G+
Sbjct: 295 SKPPRLEHVKTYPKT-EVDTVIMDWKFSFTPNDTMDLTARQVKDKINPKVVLEVRVGKGV 353
Query: 178 WAK---MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--THGLDV 232
+K + V M G + V VK +P I+R+ VCF P KP+ T G D+
Sbjct: 354 VSKGLDVIVEDMACSGLMRVKVKLQIPFPHIERVDVCFLGRPELDYVCKPLGGDTLGFDI 413
Query: 233 TEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVV 292
PG+ ++ + + + EPN+ +++ K + GN +VD + + V +
Sbjct: 414 NFIPGLESFIKEQIHANLGPMMYEPNVFPIEIAKMLA---GN--AVD--QAIGVVAVTLH 466
Query: 293 EASDMK-PSDLNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDSPNVL 349
A +K P G DPY L RTKT + T SP+W+E + I+++ + L
Sbjct: 467 GARQLKNPDKFAGTPDPYAVVSLNNRTEVGRTKTIQDTDSPRWNETIYVIITSFT--DTL 524
Query: 350 VIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393
I+ D + F D LG T + L H+ + L+ + GR
Sbjct: 525 TIQPYDWNEFRKDKELGTATFALDKLEQEPEHES-VYLEVLASGR 568
|
|
| ZFIN|ZDB-GENE-050809-35 esyt3 "extended synaptotagmin-like protein 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 80/337 (23%), Positives = 159/337 (47%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPP 130
D E W+N +++ WP + +KLL+ I + P K +++G+ P
Sbjct: 109 DVEKAAWINKILQQSWPFF--GVYMEKLLIENIQTVVRSVHPHL-KTFTFTKVHMGQKAP 165
Query: 131 MLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMHVEG 190
+T +R + ++L+L + + D+ A + + + K+ + G+ ++G
Sbjct: 166 TITGIRAYTDELETREVILDLNIVYEADVDIDA----DVNRAI------KVGIKGLQLQG 215
Query: 191 KVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIA 249
+ V ++ + + P + + + F P Q+ +T +V + PG++ + +
Sbjct: 216 MLRVILEPLIGQAPLVGGVTMFFIRRPALQIN----WTGVTNVLDGPGLSHLSESAIVDV 271
Query: 250 FEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDM--KPSDLNGL- 305
+V PN + +D+ Q F + P RV V+EA D+ K S + GL
Sbjct: 272 IASLMVLPNRMCFPLIDQVKVEQMR--FPL----PRGVVRVHVLEARDLVAKDSHMMGLV 325
Query: 306 ---ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKDHFVD 361
+DPY ++G F+TKT ++TL+P+W+E + I ++P L +E+ D+D D
Sbjct: 326 KGKSDPYTVLRVGNKHFKTKTIKETLNPRWNEVYEFVIH--EAPGQELEVELYDEDKDAD 383
Query: 362 DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D LG +++ D+R + D W L++I+ G++H +
Sbjct: 384 DFLGRFSMDCGDVRKDREIDKWYTLEDIESGQIHFKL 420
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 78/331 (23%), Positives = 149/331 (45%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + WLN +EK+WP E A+ +L+ + LE+Y P LG
Sbjct: 64 VFSQRQKLNWLNLELEKIWPYVNE--AASELIKSSVEPVLEQYTPAMLASLKFSKFTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + +L + + + +EL M + D + + + ++ LG + + V +
Sbjct: 122 VAPQFTGVSILESESGPNGITMELEMQW----DGNPKIVLDVKTLLGVSL--PIEVKNIG 175
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
G L+ + +P L E T+K I G ++T PGI+ +++ +
Sbjct: 176 FTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVI---GGELTSIPGISDAIEETI 232
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P ++ + PG++ +++K PV V+VV+A D+ D+ G +
Sbjct: 233 RDAIEDSITWPVRKIIPI------LPGDYSDLELK-PVGKLDVKVVQAKDLANKDMIGKS 285
Query: 307 DPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
DPY + P RTK T +L+P W+E F + + ++ V D+
Sbjct: 286 DPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQL 345
Query: 364 LGDCTINISDLRDGQRHDMWIPL-QNIKIGR 393
+G + +++L G+ D+W+ L ++++I R
Sbjct: 346 IGAAQVPLNELVPGKVKDIWLKLVKDLEIQR 376
|
|
| MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 103/386 (26%), Positives = 171/386 (44%)
Query: 50 RLRRKVEFEERKNSFQRRVLKDSETVRWLNHA-IEKM-WPICMEQIASQKLLLPIIPWFL 107
RL EF E + F R L+ W++ +E++ W +I Q + P + +
Sbjct: 86 RLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWA---NKIIIQ--IWPYLSMIM 140
Query: 108 E-----KYKPWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156
E K +P +K++ LY G+ P + ++V + + L+L + ++
Sbjct: 141 ENKIREKLEPKIREKSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYI 200
Query: 157 TADDMSAILAVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEP 215
++S V+L+K G G V+G+ ++G + V ++ L PFI + V F +
Sbjct: 201 GDCEIS----VELQKIRG-G------VSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249
Query: 216 PYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNW 275
P+ Q+ + T+ LD+ PGI D LL LV PN + V V K
Sbjct: 250 PHLQINWTGL-TNLLDM---PGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVT---- 301
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPK 331
++ V P RV ++EA + D L G +DPY K +G R++T K L+P
Sbjct: 302 -NLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPT 360
Query: 332 WHEEFNIPISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK 390
W+E F + ++ P L +++ D+D DD LG I + D+ + D W L +
Sbjct: 361 WNEVFEFMV--YEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTT 418
Query: 391 IGRLHLAITVLEESAKQGVDSPCDGG 416
GRLHL + L Q + D G
Sbjct: 419 SGRLHLRLEWLSLLTDQEALTENDSG 444
|
|
| UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 99/384 (25%), Positives = 171/384 (44%)
Query: 50 RLRRKVEFEERKNSFQRRVLKDSETVRWLNHA-IEKM-WPICMEQIASQK---LLLPIIP 104
RL EF + + F R L+ W++ +E++ W +I SQ L + +
Sbjct: 82 RLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERVEWA---NKIISQTWPYLSMIMES 138
Query: 105 WFLEKYKPWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTA 158
F EK +P +K++ LY G+ P + ++ + + + ++L + ++
Sbjct: 139 KFREKLEPKIREKSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGD 198
Query: 159 DDMSAILAVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPY 217
++S V+L+K + V G+ ++G + V ++ L PF+ + V F + P+
Sbjct: 199 CEIS----VELQK-------IQAGVNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPH 247
Query: 218 FQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFS 277
Q+ + T+ LD PGI D LL LV PN + V V K + +
Sbjct: 248 LQINWTGL-TNLLDA---PGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTN 298
Query: 278 VDVKEPVAYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWH 333
+ P RV ++EA + D L G +DPY K +G FR++T + L+P W+
Sbjct: 299 LRFPLPCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWN 358
Query: 334 EEFNIPISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
E F + ++ P L +++ D+D DD LG I + D+ + D W L + G
Sbjct: 359 EVFEFMV--YEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSG 416
Query: 393 RLHLAITVLEESAKQGVDSPCDGG 416
RLHL + L Q V + GG
Sbjct: 417 RLHLRLEWLSLLTDQEVLTEDHGG 440
|
|
| UNIPROTKB|G4MRL6 MGG_09947 "Tricalbin-1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 232 (86.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 85/394 (21%), Positives = 178/394 (45%)
Query: 10 HHVGIVLFLL---WLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQR 66
H+V I++F WL++ FI L + + + R+RR + + +
Sbjct: 169 HNVAIIVFASLSSWLVAVLGG-GLGWVFILLAVCSTYYRTSIRRVRRNFRDDITREMTLK 227
Query: 67 RVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLG 126
R+ ++E++ W+N + K WPI +A+ ++ + L P ++ LG
Sbjct: 228 RLDTETESLEWINSFLVKFWPIYQPVLAAT--VINSVDQVLSGATPAFLDSLKLKTFTLG 285
Query: 127 RNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRK----------RLGFG 176
PP + ++ ++ +DD ++++ +F T +D++ + A ++R R+G
Sbjct: 286 SKPPRMEHVKTYPKA-EDDIVIMDWKFSF-TPNDIADLTARQIRNKINPKVVLEIRVGKA 343
Query: 177 MWAK---MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--THGLD 231
M +K + V M G + + +K +P ++++ +CF + P KP+ T G D
Sbjct: 344 MISKGLDVIVEDMAFSGIMRLKIKLQIPFPHVEKIEMCFLDKPTIDYVCKPLGGETFGFD 403
Query: 232 VTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEV 291
+ PG+ ++ + + + PN+ ++V K + P VD + + + +
Sbjct: 404 INFIPGLEKFILEQIHGNLAPMMYAPNVFPIEVAKMLAGSP-----VD--QAIGVVAITL 456
Query: 292 VEASDMK-PSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
A +K P + +G DPY L + +TK R T +P+W+E + I++++ +
Sbjct: 457 HGAQGLKNPDNFSGTTDPYAVVTLNRRQPLAQTKVIRDTANPRWNETHYVIITSFN--DT 514
Query: 349 LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHD 381
L I++ D + F D LG + + L + H+
Sbjct: 515 LDIQLFDYNDFRKDKELGVASFQLEHLEEITDHE 548
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93XX4 | C2D61_ARATH | No assigned EC number | 0.6049 | 0.9279 | 0.9600 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| NTMC2T6.1 | NTMC2T6.1; NTMC2T6.1; LOCATED IN- plasma membrane, vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G14590.2); Has 4658 Blast hits to 3860 proteins in 257 species- Archae - 0; Bacteria - 64; Metazoa - 2751; Fungi - 514; Plants - 693; Viruses - 7; Other Eukaryotes - 629 (source- NCBI BLink). (751 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| AT3G30390 | amino acid transporter family protein; Encodes a putative amino acid transporter. (460 aa) | • | 0.871 | ||||||||
| PHOS34 | universal stress protein (USP) family protein; Contains a universal stress protein domain. Prot [...] (260 aa) | • | 0.788 | ||||||||
| AT3G17020 | universal stress protein (USP) family protein; universal stress protein (USP) family protein; F [...] (163 aa) | • | 0.786 | ||||||||
| AT3G28580 | AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (500 aa) | • | 0.716 | ||||||||
| TOM3 | TOM3; protein binding; Necessary for the efficient multiplication of tobamoviruses. (303 aa) | • | 0.679 | ||||||||
| PUB13 | PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase; Encodes a protein containing a UND, a U-box, [...] (660 aa) | • | 0.659 | ||||||||
| AT2G41190 | amino acid transporter family protein; amino acid transporter family protein; FUNCTIONS IN- ami [...] (536 aa) | • | 0.657 | ||||||||
| ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor; Encodes a eukaryotic releas [...] (436 aa) | • | 0.599 | ||||||||
| AT2G44310 | calcium-binding EF hand family protein; calcium-binding EF hand family protein; FUNCTIONS IN- c [...] (142 aa) | • | 0.565 | ||||||||
| AT1G07040 | unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloropl [...] (371 aa) | • | 0.565 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 777 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-29 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-25 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 4e-21 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-20 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-19 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 7e-19 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-18 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-16 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-13 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-13 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-12 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-12 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 2e-12 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 7e-12 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-11 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-11 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 3e-11 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 8e-11 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 8e-11 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-10 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 5e-10 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 6e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 6e-10 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 2e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-09 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-09 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-09 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-08 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 4e-08 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 7e-08 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 7e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 8e-08 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 8e-08 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-07 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 1e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-07 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 8e-07 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 8e-07 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 1e-06 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-06 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 4e-06 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 9e-06 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 2e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-04 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 1e-04 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 1e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 1e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 3e-04 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 4e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-04 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 0.003 | |
| PLN03008 | 868 | PLN03008, PLN03008, Phospholipase D delta | 0.004 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-29
Identities = 96/419 (22%), Positives = 190/419 (45%), Gaps = 56/419 (13%)
Query: 10 HHVGIVLFLL---WLLSYFDRCHPAAYFI--SLIYLYSVHDRYVMRLRRKVEFEERKNSF 64
V IVL W+ Y + +FI +Y+Y + R+RR + ++
Sbjct: 156 QSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMYVYRTCIK---RVRRNIRDLVQQELS 212
Query: 65 QRRVLKDSETVRWLNHAIEKMWPICMEQIASQ------KLLLPIIPWFLEKYKPWTAKKA 118
+ ++ D E+V WLN ++K WPI I+ Q + L IP F+
Sbjct: 213 EEKLENDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFI--------DAL 264
Query: 119 LVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTAD--DMSA---------ILAV 167
+ LG PP + +R S + D +V+++ +F D D++A +++
Sbjct: 265 ALDEFTLGSKPPRIDGIRSY-PSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISL 323
Query: 168 KLRKRLGFGMWAKMHVT--GMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPI 225
++K FG + + + +G+V V V+ + ++PFI + E P F + P+
Sbjct: 324 VVKKGKSFGS-FTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPL 382
Query: 226 --FTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEP 283
G+D+ PG++ ++ ++++ L+ PN L +D+ + + G
Sbjct: 383 GGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGT--------A 434
Query: 284 VAYARVEVVEASDMKPSD--LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPI 340
+ V++ A +K SD +NG DPY+ +T+ ++ TL+P W+E F I +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494
Query: 341 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIK-IGRLH 395
+++ P L + + D + F D +G ++++ L ++++++ L+N K +GRL
Sbjct: 495 NSFTDP--LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLT 551
|
Length = 1227 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
RV V+EA ++ DLNG +DPYVK LG +F+TK + TL+P W+E F P+ +S
Sbjct: 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES- 60
Query: 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHDMWIPL 386
+ L +EV DKD F DD LG+ I +S+L D G+ ++W+PL
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-21
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWD 344
V+++ A ++ P D G +DPYVK L + +TK + TL+P W+E F + +
Sbjct: 3 TVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE 62
Query: 345 SPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 383
L IEV DKD F DD +G TI +SDL G RH+
Sbjct: 63 L-AELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 288 RVEVVEASDMKPSDLN------GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
R+ V+EA D+ D G +DPYV ++G F++K ++ L+PKW+E + +
Sbjct: 4 RIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVD 63
Query: 342 TWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396
+ P L IE+ D+D DD LG +I++ + D W+PL+++K GRLHL
Sbjct: 64 --EVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-19
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
+ +VE ++ P D NGL+DPYVK +LG ++++K KTL+P+W E+F++ + D
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFD-DQS 60
Query: 347 NVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+L IEV DKD D+ +G C I++S L Q H + + L G L L +T+
Sbjct: 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-EDGEGSLLLLLTL 114
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-19
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWD 344
RV V+ A ++ P DLNG +DPYVK LG + +TK + TL+P W+E F ++ +
Sbjct: 2 RVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPE 61
Query: 345 SPNVLVIEVRDKDHF-VDDTLGDCT 368
L IEV D D F DD +G+ T
Sbjct: 62 L-AELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 7e-18
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
V+V+ A ++ +D NG +DP+VK L G F+TKT +KTL+P W+E F +P+ +
Sbjct: 2 TVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS-RVR 60
Query: 347 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL---QNIKIGRLHL 396
VL +EV D D DD LG I++SDL + ++ +PL K+G + L
Sbjct: 61 AVLKVEVYDWD-RGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-16
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPISTW 343
VEV EA ++ P D NGL+DPYVK +L P + +TKT +KTL+P W+E F +
Sbjct: 17 VEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPA 76
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLH 395
D L IEV D D +D +G + +S+L D W L N + G +
Sbjct: 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQEEGEYY 128
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 288 RVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
RV VVEA D+ D G +DPY +G RF+T+T TL+PKW+ PI + +
Sbjct: 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQN 63
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ-------NIKIGRL 394
+L + + DKD F D LG+ I + ++ + D WI L+ ++ G +
Sbjct: 64 Q-LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122
Query: 395 HLAITV 400
HL +
Sbjct: 123 HLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-13
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFN-IPIST 342
++ A +K D NGL+DPYVK L P + RTKT KT +P+++E I+
Sbjct: 19 CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78
Query: 343 WDSPN-VLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386
D L + V D+D F +D LG+ I + L+ Q I L
Sbjct: 79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
+ + E ++ D G +DPYVK + G +++KT K L+P W E+F +PI P
Sbjct: 3 DIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQP 62
Query: 347 NVLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQN----IKIGRLHLAITV 400
L I+V D D DD +G +++S L + ++ + L++ +G + L +T+
Sbjct: 63 --LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNI----PI 340
Y RV V+EA D+ PSD N + + +VK QLG RT+ Q + +P W+EE P
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 341 STWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQR--HDMWIPLQNI------- 389
D + V + + D+ LG I ++D+ R R W L+
Sbjct: 61 E--DHLILSVEDRVGPNK--DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQK 116
Query: 390 KI----GRLHLAIT------VLEESA 405
K R+HL + VL+ES
Sbjct: 117 KKRKFASRIHLRLCLDGGYHVLDEST 142
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-YRF------RTKTQRKTLSPKWHEEFNIPI 340
RVE++ A ++ P D NG +DP+VK +L P + F +T+ ++KTL P + E F +
Sbjct: 19 RVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV 78
Query: 341 STWDSPN---VLVIEVRDKDHF-VDDTLGDCTINISDL 374
+L+ V+D D +D G+ + ++D+
Sbjct: 79 PPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWD 344
V V+ A+++ DL D YV+ L + RTKT + +++P W+E F I +
Sbjct: 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS-Q 61
Query: 345 SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRH 380
NVL + V D+D+ +DD LG ++S L+ G++
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKV 97
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 31/118 (26%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRF-----RTKTQRKTLSPKWHEEF---NIP- 339
V V++A D+ P D L +PYVK L P R RTKT +KTL+P+W++ F N+
Sbjct: 20 VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79
Query: 340 ---------ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLR-DGQRHDMWIPLQ 387
++ WD RD + +D LG+ I+++D D + H W PLQ
Sbjct: 80 ETLKERTLEVTVWDYD-------RDGE---NDFLGEVVIDLADALLDDEPH--WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-11
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 28/235 (11%)
Query: 244 KLLSIAFEQTLV--EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD 301
L+S A+E+ P V V +P P V++ E Y + + ++ SD
Sbjct: 997 DLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSD 1056
Query: 302 LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF- 359
NG +DP+VK L ++TK +KTL+P W+EEF I + +VL I V D D
Sbjct: 1057 ENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN-RVKDVLTINVNDWDSGE 1115
Query: 360 VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT------------------VL 401
+D LG I++S L G + IPL L + +L
Sbjct: 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYALNVSRKEGIL 1175
Query: 402 EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEK 456
+ AK+ + G+ +G K + ++ + K +S EK
Sbjct: 1176 GDIAKKV-GTGLKAGSTTVGSVGVKAVGGVADGVKGGKGIISGGKK----ISEEK 1225
|
Length = 1227 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 39/138 (28%)
Query: 286 YARVEVVEASDMKPSDLNG----------LADPYVKGQLGPYRF-RTKTQRKTLSPKWHE 334
++++ EA D+KP+D + L DPYV + +T T+ KT SP W+E
Sbjct: 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64
Query: 335 EFNIPISTWDSPNVLVIEVRDKDH-----FVDDTLGD------CTINISDLRDGQRH--D 381
EF EV + + F D +G CTI+ DL D
Sbjct: 65 EF-------------TTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFD 111
Query: 382 MWIPLQNIKIGRLHLAIT 399
+W+ L+ G+LH+ I
Sbjct: 112 LWVDLE--PQGKLHVKIE 127
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ ++ D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 17 VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76
Query: 344 DSPN-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWI 384
D L I V DKD +D +G + I+ + RH W+
Sbjct: 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRH--WL 117
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-11
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 5/107 (4%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
+ +V+V+ AS + +D+ G +DP+ +L R +T T KTL+P+W++ F PI D
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI--KDI 59
Query: 346 PNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKI 391
+VL + V D+D + LG I + +++G+R W L++ K+
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYALKDKKL 104
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWDS 345
V +++A+D+ D+ G +DPYVK L P + F TK RKTL+P ++E F + +
Sbjct: 20 VGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79
Query: 346 PN-VLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMW 383
N LV V D D F D +G+ + + + G + W
Sbjct: 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-10
Identities = 32/118 (27%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRF---RTKTQRKTLSPKW 332
FS++ + + V++++A +++P D +G ADPY K +L P R ++K +KTL+P++
Sbjct: 7 FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEF 66
Query: 333 HEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
E F + + P L + + D D F D+ +G + ++++ ++ D+W +Q+
Sbjct: 67 DESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-10
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 288 RVEVVEASD-MKPSDLNG-LADPYVK------GQLGPYRFRTKT-QRKTLSPKWHEEFNI 338
++++ KP G + DPYV+ +F+TK + +P W+E F
Sbjct: 5 TIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEF 64
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
++ + L V D+D DD LG + + LR G RH +PL + K L L+
Sbjct: 65 DVTVPEL-AFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRH---VPLLDSKGEPLELS 119
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-10
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V++A ++ PSD GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 18 VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77
Query: 344 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380
V LVI V DKD ++ +G + + H
Sbjct: 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 14/97 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---------FRTKTQRKTLSPKWHEEFNI 338
RV+V+ D+ D+ G +DPYVK L Y +TKT +KTL+PKW+EEF
Sbjct: 3 RVKVLAGIDLAKKDIFGASDPYVKISL--YDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 339 PISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
++ + L+ EV D++ DD LG + +++L
Sbjct: 61 RVNP--REHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
+V VV +++ D +DPYV LG + +T+ +K L+P W+EE + + +
Sbjct: 5 KVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP--NPMA 61
Query: 348 VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 382
L +EV DKD F DD++G+ I++ L + + D
Sbjct: 62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDH 97
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346
V +VE D+KP + NG +DPY + +G +TK TL+PKW ++ D
Sbjct: 18 MVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKW--NSSMQFFVKDLEQ 75
Query: 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLR 375
+VL I V D+D F DD LG I ++D+
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVADIL 105
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYV-------KGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
+ +V A ++K NGL+DPYV K ++ +T+T TL+P+W EEF + +
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIA----KTRTIYDTLNPRWDEEFELEVP 60
Query: 342 TWDSPNVLVIEVRDKDHFVD-DTLGDCTINISDLR---DGQRHDMWIPLQNIKIGRLHLA 397
P + V D+ D G ++ + R DG ++W+ L + + GRL L
Sbjct: 61 A-GEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-DTQ-GRLLLR 117
Query: 398 ITV 400
+++
Sbjct: 118 VSM 120
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 342
P +V V A + D G ADPYV + R+ Q+ TLSP++ +
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK 60
Query: 343 WDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHD 381
SP + I+V + + D+ LG T++
Sbjct: 61 PRSP--IKIQVWNSNLLCDEFLGQATLSADPNDSQTLRT 97
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNI----PIS 341
RV VV A +++P D NG +DPY+K +LG + R TL+P + + F + P +
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISD 373
+ +L I V D D DD +G+ I++ D
Sbjct: 63 S-----ILKISVMDYDLLGSDDLIGETVIDLED 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 307 DPYVKGQLGPYRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365
DPY ++G +TKT + P+W EE I+ D +L + V D D D +G
Sbjct: 23 DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DKKPILKVAVFDDDKRKPDLIG 81
Query: 366 DCTINISDLRDGQRHDMWIPLQN 388
D +++S D W L
Sbjct: 82 DTEVDLSPALKEGEFDDWYELTL 104
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-08
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
VEVV+A D+ P D G + YV+ + RT+T+ K L+P W+E+ +S +
Sbjct: 4 VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSN 63
Query: 349 LVIEV 353
LV+EV
Sbjct: 64 LVLEV 68
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-08
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE--FNIPISTWD 344
+V V++A + +G D YV QLG ++ T + KT SP W EE F +P
Sbjct: 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSG 60
Query: 345 SPN--VLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQN 388
+ N L + V ++ +D LG +I ++DL G+R W L++
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-08
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 288 RVEVVEASDMKPSDLN-GLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPIS-- 341
V + A+D+ +D G +DPYV G + T+ RK L+P W E + + ++
Sbjct: 4 VVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPD 63
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 374
+ L + D D F DD LG I++ +L
Sbjct: 64 EVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNI---PIST 342
+++++A ++ D +G +DP+VK L P ++ TK +RK L+P W+E F P
Sbjct: 20 LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79
Query: 343 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
VL ++V D D F +D +G+ ++ ++ + + W L+
Sbjct: 80 LQQ-RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-07
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 300 SDLNGLADPYVK----GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355
GL PY + G+L + T+ ++KT +P W+ ++ + + + V+D
Sbjct: 7 ESKTGLLSPYAELYLNGKL---VYTTRVKKKTNNPSWNASTEFLVTDRRK-SRVTVVVKD 62
Query: 356 KDHFVDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGRLHL 396
D LG +I+++DL D W PL GR+ +
Sbjct: 63 DRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF---------NIP 339
+ VV A + D G +DPYV Q+G + RTKT + L+P W+E+F I
Sbjct: 5 ITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIK 64
Query: 340 ISTWDSPNVLVIEVRDK-DHFVDDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ WD + + ++ K DD LG I + L G+ D+W L+
Sbjct: 65 VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLE 111
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-07
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHE--EFNIPISTWDS 345
R V+EA D+ P D NG +DP+V+ T +K+ P+W+E EF + +
Sbjct: 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG---A 59
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L +EV D D +D LG +I L+ ++ + W L
Sbjct: 60 DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 289 VEVVEASDMKPSD-LNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDS 345
V + A +K SD + G DPYV + R RTK ++ T +P W+E I +++
Sbjct: 6 VTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTE 65
Query: 346 PNVLVIEVRDK-DHFVDDTLGDCTINISDLRD 376
P L + V D D D +G ++S L
Sbjct: 66 P--LNLTVYDFNDKRKDKLIGTAEFDLSSLLQ 95
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
R+ + +A+D+K + G DPYV+ + G + RT T TL+P W E +P++ S
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT---S 59
Query: 346 PN-VLVIEVRDKDHFVDD-TLGDCTINISDL 374
PN + +EV D + D +LG IN+SDL
Sbjct: 60 PNQKITLEVMDYEKVGKDRSLGSVEINVSDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL--GPYRF---RTKTQRKTLSPKWHEEF--NIPIS 341
V +++A ++K D+NG +DPYVK L R +T +++TL+P ++E F NIP
Sbjct: 19 VNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP-- 76
Query: 342 TWDS--PNVLVIEVRDKD 357
+ L+I V DKD
Sbjct: 77 -LERLRETTLIITVMDKD 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 36/136 (26%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPY---------------------------VKGQ 313
+ P+ +V V+EA + D+NG +DPY V
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 314 LGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHFVDDTLGDCTIN 370
P + T+ + +TL+P W+E F + D N L +++ D D DD LG I
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVE--DVSNDQLHLDIWDHD---DDFLGCVNIP 138
Query: 371 ISDLRDGQRHDMWIPL 386
+ DL D W L
Sbjct: 139 LKDLP-SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
Y V VV+A + DP V+ +LG Y+ TK +T +P+W++ F + D
Sbjct: 1 YLYVRVVKARGLPA----NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAF---SKDR 53
Query: 346 P--NVLVIEVRDKDHFVDDTLGDCTINISD--LRD 376
+ L + V DKD DD LG ++S+ R
Sbjct: 54 LQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRV 88
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 319 FRTKTQRKTLSPKWHEE--FNIPISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLR 375
FRTKT K+L P + E+ F IP + L + D+D D+ +G I DL
Sbjct: 36 FRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVLRRDSVIGKVAIKKEDLH 91
Query: 376 DGQRHDMWIPLQNIKI-----GRLHLAI 398
D W PLQ + G++HL +
Sbjct: 92 KYYGKDTWFPLQPVDADSEVQGKVHLEL 119
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLS------PKWHEE--FNIPI 340
V ++ A ++ +D G DPYV Q RT+ ++ ++ P+W+E+ F +
Sbjct: 5 VLLISAKGLQDTDFLGKIDPYVIIQ-----CRTQERKSKVAKGDGRNPEWNEKFKFTVEY 59
Query: 341 STWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 374
W L++ + DKD+F DD +G+ TI++ L
Sbjct: 60 PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFR-----TKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L R T +++TL+P ++E F+ +
Sbjct: 19 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE 78
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH--DM 382
V L++ V D D +D +G + + RH DM
Sbjct: 79 QIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDM 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF----RTKTQRKTLSPKWHE--EFNIPIS 341
V V+E D+ NG DP+ + L RTK ++KT +P++ E F + I
Sbjct: 2 SVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 342 T---------WD---SPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQ 387
+ + L +E+ D LG+ I + L+ H W LQ
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 297 MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356
++ D G D Y + GP RT+T + +P+W+E++ P+ +D VL + V D
Sbjct: 15 LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV--YDPCTVLTVGVFDN 72
Query: 357 DHFVDDT-------LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLA 397
+G I +S L D + + PL ++ K+G L A
Sbjct: 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V + ++ P D + + DPYV+ L P R +T ++ L+P + E F P+S
Sbjct: 20 VTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79
Query: 344 DSPN-VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L + V++ F+ LG I++SDL + W L
Sbjct: 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 307 DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDDTLG 365
DP+V G FRT +R TL+P ++E + + + +V DKD F +D +
Sbjct: 27 DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86
Query: 366 DCTINISDLRDGQRHD 381
++++ +L +
Sbjct: 87 TGSLSVQELLNAAPQP 102
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 288 RVEVVEASDMKPSDL-NGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++E D+ D +G +DPYVK QL P ++ +T+ RKT +P + E F +
Sbjct: 19 LVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPY 78
Query: 344 DSPNVLVIEVRDKDHFV---------DDTLGDCTINISDL 374
+ L + HF DD +G+ ++
Sbjct: 79 NQLQDLSL------HFAVLSFDRYSRDDVIGEVVCPLAGA 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 288 RVEVVEASDMKPSD-LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE---FNIPISTW 343
+V VV A D+ D + L D +V+ + G ++T +K+L+P W+ E F +
Sbjct: 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEEL 61
Query: 344 DSPNVLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDM--WIPL 386
L I V D D + +D +G I+++ L + W P+
Sbjct: 62 QD-EPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
RV V+EA + G DP VK ++G + T ++ T P ++E F +SP+
Sbjct: 7 RVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFH--ESPD 60
Query: 348 VL-----VIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDM---WIPLQNI 389
L I V D DTL G +++ + D H W+ L +
Sbjct: 61 ELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL---GPY--RFRTKTQRKTLSPKWHEE--FNIPIS 341
+ +++A ++K D+ G +DPYVK L G + +T ++ TL+P ++E F++P
Sbjct: 18 LTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 383
D+ + L+I V D D ++ +G C + DGQ + W
Sbjct: 78 NVDNVS-LIIAVVDYDRVGHNELIGVC--RVGPNADGQGREHW 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 307 DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV--LVIEVRDKDHFVDDTL 364
PYV+ +G ++K + +T +P W E F + +P L IEV+D +L
Sbjct: 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVR---NPENQELEIEVKDDKT--GKSL 76
Query: 365 GDCTINISDL 374
G T+ +S+L
Sbjct: 77 GSLTLPLSEL 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-GPY------RFRTKTQRKTLSPKWHEEFNIPIS 341
V+VV A+D+K G+ P+V+ L GP+ +F TK++ SPK++E F +
Sbjct: 4 VKVVAANDLK-WQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62
Query: 342 TWDSPNVLVIEVRDKDH-FV--DDTLGDCTINISDLRDGQRHDMWIPL 386
D P + + KD+ F D +G + + D+ W+PL
Sbjct: 63 NEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 306 ADPYVKGQLGPYRF-RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364
+DPYV + RT+ + + P W E+FNI I+ L +V+D D F +
Sbjct: 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIA--HPFAYLEFQVKDDDVFGAQII 134
Query: 365 GDCTINISDLRDGQRHDMWIPL 386
G I + D+ G+R W P+
Sbjct: 135 GTAKIPVRDIASGERISGWFPV 156
|
Length = 868 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVK----GQLGPYRFRTKTQRKTLSPKWHEEFNI---PI 340
++ V A +K + + DPYV+ GQ +T+ +KT +PKW+E F + P
Sbjct: 5 QITVESAK-LKSNSKSFKPDPYVEVTVDGQ---PPKKTEVSKKTSNPKWNEHFTVLVTPQ 60
Query: 341 STWDSPNVLVIEVRDKDHFVDDTL-GDCTINISDL 374
ST L +V D L G+ ++++SD+
Sbjct: 61 ST------LEFKVWSHHTLKADVLLGEASLDLSDI 89
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 777 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.85 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.81 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.8 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.79 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.79 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.79 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.79 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.78 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.78 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.78 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.78 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.77 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.76 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.76 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.76 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.76 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.75 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.74 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.74 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.74 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.74 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.74 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.74 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.73 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.73 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.73 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.72 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.72 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.72 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.72 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.71 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.7 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.69 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.69 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.68 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.68 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.68 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.68 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.67 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.67 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.66 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.66 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.66 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.65 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.65 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.65 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.64 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.64 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.64 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.64 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.63 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.63 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.62 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.62 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.62 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.62 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.61 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.61 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.61 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.61 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.6 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.6 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.6 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.59 | |
| PLN03008 | 868 | Phospholipase D delta | 99.59 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.58 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.58 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.58 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.56 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.55 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.54 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.53 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.53 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.51 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.49 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.48 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.47 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.42 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.41 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.4 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.29 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.28 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.21 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.2 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.19 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.17 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.12 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.08 | |
| PLN02270 | 808 | phospholipase D alpha | 99.07 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.02 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.97 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.89 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 98.88 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.86 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.82 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 98.78 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.74 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.73 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.72 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.67 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.67 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.66 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.64 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 98.64 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.64 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.59 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.59 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.52 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.4 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.33 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.33 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 98.31 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.25 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.24 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.18 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.04 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.83 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 97.74 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 97.66 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 97.65 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 97.64 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 97.61 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.5 | |
| KOG4269 | 1112 | consensus Rac GTPase-activating protein BCR/ABR [S | 97.48 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 97.43 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 97.42 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.29 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 97.19 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 97.19 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 97.15 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.13 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 97.11 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.1 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 97.08 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 96.97 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.95 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 96.94 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 96.9 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.47 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 96.44 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 96.38 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.32 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 96.21 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 96.17 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 96.12 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 96.09 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 95.69 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 95.53 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 95.52 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.31 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 94.49 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.34 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 94.02 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 93.92 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.78 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 93.56 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 92.77 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 92.49 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.28 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 92.16 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 91.83 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 91.43 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 91.06 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 90.93 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 90.81 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 90.72 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 90.49 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 90.22 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 89.96 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 89.5 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 89.44 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.35 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 89.16 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 89.06 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 88.94 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 88.84 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 88.51 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 88.42 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 88.33 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 88.26 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 88.02 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 87.99 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 87.52 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 87.0 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 86.68 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 86.48 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 86.24 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 85.58 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 85.51 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 85.31 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 85.12 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 85.04 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 84.93 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 84.27 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 83.21 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 83.13 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 83.11 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 82.95 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 82.87 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.06 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 80.43 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 80.07 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=539.40 Aligned_cols=385 Identities=24% Similarity=0.483 Sum_probs=332.6
Q ss_pred hhHHHHHHHHH---HHHHHHHHhcchhHHHHHHHHhhheeeehhhHHHHHHHHHHHHHhhhhccccCCCccchHHHHHHH
Q 004037 6 ISIMHHVGIVL---FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVRWLNHAI 82 (777)
Q Consensus 6 ~~~~~~~~~vl---~~~wllg~~g~s~~~lllv~~i~l~~~~~r~~~rlr~~i~~e~~~~a~~~~~~~d~EsveWLN~iL 82 (777)
-.|||.+++++ +++|++||++|+|+.+||+++..+++ ++++..|+|+.++.+..+++.++++..|+|++||||+||
T Consensus 152 ~~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~~~~~v-Y~~~~~rv~rnird~v~~~~~~ek~~nd~ESveWLNtfL 230 (1227)
T COG5038 152 GDWYQSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMYV-YRTCIKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFL 230 (1227)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 36999888886 68999999999999998888765443 578888999999988888888899999999999999999
Q ss_pred HHhCcccchHHHHHHhhccchHHHHhhcCCccccceeeeeeecCCCCCeEeeEEEEecCCCCCeEEEEEEEEEeeCCCcc
Q 004037 83 EKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMS 162 (777)
Q Consensus 83 ~~~Wp~~~e~~~S~~I~~~~l~~~l~~~kP~~i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vvLDldis~~~~~D~~ 162 (777)
+++||++. +.+|++|...+.+ .|...-|.+|..++|++||||++||||.+||.|+ +++.|.+.|||+++|.+ .|++
T Consensus 231 ~KfW~i~e-P~iSqqV~dqvn~-~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp-~te~dtv~mD~~~sftP-~d~s 306 (1227)
T COG5038 231 QKFWPIIE-PSISQQVVDQVNQ-QLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYP-STESDTVVMDVDFSFTP-HDIS 306 (1227)
T ss_pred HhheeccC-hHHHHHHHHHHHH-HHHhhcchhhhhhhhhhcccCCCCCceeeeeecC-CCCCceEEEEeeeccCc-cchh
Confidence 99999984 6678888865555 4555889999999999999999999999999996 79999999999999964 5666
Q ss_pred ceeeehhhhc----------cC--cc-eeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceeEEEEeeccc--
Q 004037 163 AILAVKLRKR----------LG--FG-MWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFT-- 227 (777)
Q Consensus 163 i~l~v~l~~r----------lG--~G-~~~~v~V~~l~~~G~lRV~l~L~~~~P~vg~v~vsFle~P~idf~lkpl~~-- 227 (777)
.+.+-+.+.+ .| +| +++||.|+++.|.|++||++.|++.+||++.|++||||.|+|||.++|++.
T Consensus 307 D~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~ 386 (1227)
T COG5038 307 DVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDF 386 (1227)
T ss_pred hhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCc
Confidence 5554444332 23 35 678999999999999999999999999999999999999999999999963
Q ss_pred CCCccccCcchHHHHHHHHHHHhhhcccCCceeEecccccCCCCCCcceeeeecCceeEEEEEEEEecCCCCCC--CCCC
Q 004037 228 HGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD--LNGL 305 (777)
Q Consensus 228 ~G~dV~~iPGLs~~I~~~I~~~l~~~LV~Pn~~~Idl~k~~s~~~~~~fsL~y~~~~G~L~VtVieAk~L~~~D--~~G~ 305 (777)
+|+||+.||||+.||+++|..++++|+++|+++++|+.+++++.. ..+.|+|.|+|.+|++|...+ .++.
T Consensus 387 ~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s--------~~aIGVv~vkI~sa~~lk~~d~~i~~~ 458 (1227)
T COG5038 387 FGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDS--------GTAIGVVEVKIKSAEGLKKSDSTINGT 458 (1227)
T ss_pred cceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcccc--------CCeeEEEEEEEeeccCcccccccccCC
Confidence 589999999999999999999999999999999999999998742 468999999999999999888 6899
Q ss_pred CCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCcc-ce
Q 004037 306 ADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH-DM 382 (777)
Q Consensus 306 sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~-~~ 382 (777)
.|||+++.... ...+|++.++++||+|||+|++.+... .+.|.++|||++.++ |+.+|.+.++|..|...... +.
T Consensus 459 vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne 536 (1227)
T COG5038 459 VDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNE 536 (1227)
T ss_pred CCceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccccCCcceeeeEEechHHhhhccccccc
Confidence 99999999855 567999999999999999999999974 467999999988876 99999999999988776543 22
Q ss_pred eeec-c-CCCCcEEEEEEEEEecCC
Q 004037 383 WIPL-Q-NIKIGRLHLAITVLEESA 405 (777)
Q Consensus 383 W~~L-~-~~~~GeI~LsL~y~p~s~ 405 (777)
-+.+ . ....|+|++.+.|.|..+
T Consensus 537 ~~e~~~~~k~vGrL~yDl~ffp~~e 561 (1227)
T COG5038 537 LYEFLRNTKNVGRLTYDLRFFPVIE 561 (1227)
T ss_pred eeeeeccCccceEEEEeeeeecccC
Confidence 3333 2 356899999999988654
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=292.98 Aligned_cols=233 Identities=24% Similarity=0.324 Sum_probs=200.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccC-CCCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~-e~~~~ 348 (777)
...|++.|+.....|.|+|++|++|+.+|..|.+||||++++.+ .+++|++.++|+||.|||+|.|.+... ...++
T Consensus 155 ~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~ 234 (421)
T KOG1028|consen 155 NLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV 234 (421)
T ss_pred eEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence 35699999999999999999999999999778899999999987 679999999999999999999997643 25679
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEecCCCccc------------
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAKQGV------------ 409 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~s~~lsv------------ 409 (777)
|.+.|||+|+|+ |++||++.++|..+........|.+|... ..|+|+++|+|.+.++++++
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~ 314 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMD 314 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCccc
Confidence 999999999998 99999999999999888778889999752 24799999999999888765
Q ss_pred ----cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceEEecc
Q 004037 410 ----DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIWVHQP 482 (777)
Q Consensus 410 ----~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~v~~p 482 (777)
.++|++.++ ..+.++++++||+++++++||+|||+|.|..+++..+.+...+++.|.+. ..+. |-++.+.
T Consensus 315 ~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~ 391 (421)
T KOG1028|consen 315 VGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGS 391 (421)
T ss_pred CCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecC
Confidence 456777766 34458899999999999999999999999999999999999999998884 4443 5333322
Q ss_pred C--cccccccccccCCCCcccceeeecC
Q 004037 483 G--SEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 483 g--~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
. ..+.+||..|...||+|.++||...
T Consensus 392 ~~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 392 DSTGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CCCchHHHHHHHHHhCccCceeeeEecc
Confidence 2 3345999999999999999999875
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=178.08 Aligned_cols=114 Identities=24% Similarity=0.412 Sum_probs=101.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
.|.|+|+|++|++|+..+ .|++||||++.++.++++|+++.+ ++||+|||+|.|.+.. ....|.|+|||+|.++ |
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~--~~~~l~~~V~d~d~~~~d 77 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE--GVDSIYIEIFDERAFTMD 77 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC--CCcEEEEEEEeCCCCcCC
Confidence 379999999999998777 689999999999999999999876 8999999999999975 2467999999999997 8
Q ss_pred ceeEEEEEeCC-cccCCCccceeeeccC----CCCcEEEEEEEE
Q 004037 362 DTLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV 400 (777)
Q Consensus 362 d~IG~v~I~L~-~L~~~~~~~~W~~L~~----~~~GeI~LsL~y 400 (777)
++||.+.++|. .+..+...+.|++|.+ ...|+|+|+++|
T Consensus 78 d~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 78 ERIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred ceEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 99999999996 5777777899999976 357999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=175.08 Aligned_cols=110 Identities=21% Similarity=0.393 Sum_probs=97.8
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
..|+|.|++..+.|+|+|++|++|+ . .|.+||||+++|.+ .+.+|+++++|+||+|||+|.|.++..+ ...+
T Consensus 3 l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~t 79 (118)
T cd08677 3 LHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGT 79 (118)
T ss_pred EEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcE
Confidence 4699999999999999999999998 3 46799999999975 5789999999999999999999988543 3568
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
|.|+|||+|+++ +++||++.++|+++..+...+.|..|
T Consensus 80 L~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 80 LTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 999999999997 99999999999998777777788765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=170.78 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=99.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC----CCCcEEEEEEeecCCCC-C
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~----e~~~~L~V~V~D~D~~~-D 361 (777)
++|+|++|+||+.++.+|.+||||++++++++++|+++++|+||+|||+|.|.+... .....|.|.|||++.++ |
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999999999999999999999999999999999999999999998752 13568999999999987 9
Q ss_pred ceeEEEEEeCCccc--CCCccceeeeccCC------CCcEEEEEEE
Q 004037 362 DTLGDCTINISDLR--DGQRHDMWIPLQNI------KIGRLHLAIT 399 (777)
Q Consensus 362 d~IG~v~I~L~~L~--~~~~~~~W~~L~~~------~~GeI~LsL~ 399 (777)
++||++.++|+++. .+.....|++|.+. ..|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 45567899999752 3699999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=163.17 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=104.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
+|+|+|++|++|+..+.++.+||||++++++++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++.++ |++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999999999999999999999999999998753 3578999999999986 9999
Q ss_pred EEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEE
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
|++.++|+++..+...+.|++|.+. .|+|++.+.|.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999988889999999864 69999998874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-19 Score=163.80 Aligned_cols=115 Identities=29% Similarity=0.506 Sum_probs=104.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
.|+|+|++|++|+..|..|.+||||++.+++ ..++|+++++|+||.|||+|.|.+... .+.|.|+|||+|.++ |++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcc
Confidence 3789999999999999999999999999987 689999999999999999999998753 478999999999985 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC----CCcEEEEEEEEEe
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE 402 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~y~p 402 (777)
||++.++|+++..+...+.|++|.+. ..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988888999999753 3799999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=167.50 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=98.0
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC---
Q 004037 286 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (777)
Q Consensus 286 ~L~VtVieAk~---L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~--- 359 (777)
.|+|+|++|+| |+.+|..|.+||||++++++++++|+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 88899999999999999999999999999999999999999999753 35899999999986
Q ss_pred ----CCceeEEEEEeCCcccCCCccceeeeccC------CCCcEEEE
Q 004037 360 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL 396 (777)
Q Consensus 360 ----~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~------~~~GeI~L 396 (777)
+|++||++.++|..+..+.....|++|.. .+.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 69999999999999999888899999984 24677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=163.78 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=102.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
|.|+|+|++|++|+..+..+.+||||++++++++++|+++.+ ++||.|||+|.|.+... ..+.|.|+|||++..+|++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 689999999999999999999999999999999999998754 79999999999999853 3568999999999877999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC--CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL~y 400 (777)
||++.++|+++..+.....|++|... ..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998777677899999753 47999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=162.46 Aligned_cols=115 Identities=34% Similarity=0.613 Sum_probs=104.1
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC
Q 004037 285 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~------~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
|+|+|+|++|++|+..+. .|.+||||+++++++.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 689999999999998874 36899999999999999999999999999999999998753 35789999999998
Q ss_pred CCCceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 359 ~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
.++++||++.++|.++..+...+.|++|.+...|+|++++++
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999999988777899999998889999998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=166.61 Aligned_cols=114 Identities=25% Similarity=0.451 Sum_probs=101.4
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++++.. |.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 4 i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~ 83 (125)
T cd08393 4 VQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPT 83 (125)
T ss_pred EEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCC
Confidence 468999999999999999999999999975 8999999999964 4579999999999999999999987422 34
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ +++||++.++|.++........|++|+
T Consensus 84 ~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 84 RVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 68999999999986 899999999999998887788999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=166.31 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=105.9
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
....|.|+|+|++|++|+..|..|.+||||+++++.+.++|+++++|+||.|||+|.|.+... ....|.|+|||+|.++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCC
Confidence 457899999999999999999999999999999999999999999999999999999998753 3468999999999886
Q ss_pred -CceeEEEEEeCCcccC-----CCccceeeeccCCCCcEEEEEEEE
Q 004037 361 -DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~-----~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
|++||++.++|.++.. ......|+.|.+...|+|+|++++
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999999876 223456888888889999999976
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-19 Score=165.47 Aligned_cols=111 Identities=30% Similarity=0.368 Sum_probs=98.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEec-ccC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STW-DS 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V-~~~-e~ 345 (777)
..+|++.|. .+.|.|+|++|++|+.++ ++.+||||++++.+ .+.+|+++++++||.|||+|.|.+ ... ..
T Consensus 3 ~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 3 QVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred eEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 356889998 799999999999999999 89999999999974 478999999999999999999987 311 13
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
...|.|.|||+|.++ +++||++.++|.++..+.....|++|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 468999999999987 99999999999999988778899987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=161.84 Aligned_cols=113 Identities=29% Similarity=0.443 Sum_probs=103.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
|.|+|++|++|+..+..+.+||||++++++ .+++|+++++|+||.|||+|.|.+... ..+.|.|+|||+|.++|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 789999999999998889999999999963 678999999999999999999998753 3467999999999888999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
||++.++|+++..+.....|++|.+...|+|++++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence 9999999999999888999999998889999999875
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=163.96 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=101.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++.+. .|.+||||++++.+ .+.||+++++++||.|||+|.|.+...+ ..
T Consensus 4 i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~ 83 (125)
T cd04029 4 ILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLET 83 (125)
T ss_pred EEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCC
Confidence 46889999999999999999999998875 58899999999964 3679999999999999999999987422 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ +++||++.++|..+......+.|++|+
T Consensus 84 ~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 84 RTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 57999999999987 899999999999999888889999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=163.01 Aligned_cols=116 Identities=27% Similarity=0.345 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeecCCC--CC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD 361 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~~--~D 361 (777)
.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||.+.+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999998899999999999999999999999999999999999987422 235799999999887 58
Q ss_pred ceeEEEEEeCCccc-CCCccceeeeccCC-----CCcEEEEEEEEE
Q 004037 362 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 362 d~IG~v~I~L~~L~-~~~~~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
++||++.++|+++. .+.....|++|+.. .+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 45667899999853 489999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-18 Score=162.02 Aligned_cols=115 Identities=26% Similarity=0.533 Sum_probs=103.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...+++.|++..+.|.|+|++|++|+..+..|.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ....
T Consensus 4 ~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~ 83 (124)
T cd08387 4 ELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRT 83 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCE
Confidence 34688999999999999999999999999999999999999953 5789999999999999999999987422 2458
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|+|||++.++ +++||++.++|+++..+...+.|++|+
T Consensus 84 l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 84 LEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999999999886 999999999999999888889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-18 Score=160.70 Aligned_cols=112 Identities=30% Similarity=0.513 Sum_probs=99.0
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|+||++++ .+|.+||||.+.++.+ .++|+++++|+||.|||+|.|.+.. ....|.|.|||++.++ |++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence 679999999999874 4688999999999774 6899999999999999999999985 3468999999999986 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
||.+.++|+++..+...+.|++|+.. ..|+|||++++
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999887778999999853 37999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=160.47 Aligned_cols=115 Identities=35% Similarity=0.583 Sum_probs=102.2
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 285 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
|.|+|+|++|++|+..+. .+.+||||++.++.++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999999988 89999999999999999999999999999999999999852 3578999999999885 9
Q ss_pred ceeEEEEEeCCcccC---CCccceeeeccCC-------CCcEEEEEEEE
Q 004037 362 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV 400 (777)
Q Consensus 362 d~IG~v~I~L~~L~~---~~~~~~W~~L~~~-------~~GeI~LsL~y 400 (777)
++||++.++|.++.. ......|++|.+. ..|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999873 3446899999865 48999999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=162.05 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=100.6
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~ 345 (777)
+.+|+|.|++..+.|.|+|++|+||++.+..+.+||||+++|.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 34689999999999999999999999998889999999999965 3789999999999999999999987533 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCC-ccceeeec
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL 386 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~-~~~~W~~L 386 (777)
..+|.|.|||++.++ +++||++.|+|+++.... ....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 468999999999886 999999999999996654 46789876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-18 Score=160.04 Aligned_cols=114 Identities=32% Similarity=0.526 Sum_probs=102.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcEE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVL 349 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L 349 (777)
..+++.|....+.|.|+|++|++|+..+..+.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ....|
T Consensus 5 l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l 84 (124)
T cd08385 5 LQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL 84 (124)
T ss_pred EEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence 4688999999999999999999999999889999999999964 5789999999999999999999987422 24589
Q ss_pred EEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 350 VIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 350 ~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
.|+|||+|.++ +++||++.++|+++..+...+.|++|.
T Consensus 85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 99999999986 899999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=162.05 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=99.8
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|....+.|.|+|++|+||++++.. |.+||||++++.+ .+.||+++++++||+|||+|.|.+...+ ..
T Consensus 4 i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~ 83 (128)
T cd08392 4 IEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSS 83 (128)
T ss_pred EEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCC
Confidence 468999999999999999999999999875 9999999999965 4779999999999999999999987532 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC---Cccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~---~~~~~W~~L~ 387 (777)
..|.|.|||.+.++ +++||++.|+|+++... .....||+|.
T Consensus 84 ~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 84 RQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred cEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 68999999999886 89999999999998664 3567899883
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-18 Score=164.12 Aligned_cols=119 Identities=29% Similarity=0.485 Sum_probs=102.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
.|+|+|++|++|++++.+|.+||||++.+++++.+|+++.+ |+||.|||+|.|.+... ....|.|.|||++..+ |++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 38999999999999999999999999999999999999877 69999999999998642 3468999999999875 999
Q ss_pred eEEEEEeCCcccCC----CccceeeeccCCC-----------CcEEEEEEEEEecCC
Q 004037 364 LGDCTINISDLRDG----QRHDMWIPLQNIK-----------IGRLHLAITVLEESA 405 (777)
Q Consensus 364 IG~v~I~L~~L~~~----~~~~~W~~L~~~~-----------~GeI~LsL~y~p~s~ 405 (777)
||++.++|+++..+ ...+.|++|.+.. .|+|+|++++.....
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence 99999999998653 3468999998632 499999999875443
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=164.16 Aligned_cols=116 Identities=22% Similarity=0.373 Sum_probs=102.3
Q ss_pred eeEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcc
Q 004037 284 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKW 332 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D------------------------------~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~W 332 (777)
.|.|.|+|++|++|+.+| ..|.+||||++++++ +..+|+++++++||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 699999999999999987 246789999999987 4579999999999999
Q ss_pred cceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEE
Q 004037 333 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVL 401 (777)
Q Consensus 333 nEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~ 401 (777)
||+|.|.+.. ..+.|.|.|||+|.+++++||.+.++|+++..+...+.|++|.+. ..|+|++++.|.
T Consensus 86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999865 346799999999998899999999999999988888999999652 368999999873
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-17 Score=157.70 Aligned_cols=114 Identities=23% Similarity=0.406 Sum_probs=101.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|++|+. ..|.+||||+++++. ++++|+++++|+||.|||+|.|.+.. ..+.|.|+|||++..+ |++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence 6799999999987 678999999999974 67899999999999999999999864 3568999999999987 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEecC
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEES 404 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~s 404 (777)
||++.++|+++..+.....|++|... ..|+|++++.|.+.+
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 99999999999988777899999753 489999999998765
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-18 Score=163.77 Aligned_cols=114 Identities=24% Similarity=0.234 Sum_probs=99.3
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~ 345 (777)
+...|++.| ..+.|.|+|++|+||++.+ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+.. .
T Consensus 18 G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~ 93 (146)
T cd04028 18 GDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--T 93 (146)
T ss_pred ceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--C
Confidence 346788888 4689999999999999864 678999999999965 37899999999999999999999982 5
Q ss_pred CcEEEEEEe-ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 346 PNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 346 ~~~L~V~V~-D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
...|.|.|| |++.++ +++||++.|+|+++..+.....|++|.+.
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 679999999 677776 89999999999999887778899999863
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-18 Score=160.33 Aligned_cols=115 Identities=26% Similarity=0.328 Sum_probs=98.9
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEe-cccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~ 346 (777)
+.+|++.|+...+.|.|+|++|++|+..+.. +.+||||++++.+ ++.||+++++|+||.|||+|.|. +...+ ..
T Consensus 4 ~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~ 83 (128)
T cd08388 4 TLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQD 83 (128)
T ss_pred EEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCC
Confidence 4568999999999999999999999998876 8999999999964 57799999999999999999994 44221 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC--Cccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~--~~~~~W~~L~ 387 (777)
..|.|.|||+|.++ |++||++.++|+++... .....|++|+
T Consensus 84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 47999999999886 99999999999998765 5578899886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-17 Score=157.67 Aligned_cols=115 Identities=25% Similarity=0.436 Sum_probs=102.2
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
..+++|.|++..+.|+|+|++|+||+..+..+.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ..
T Consensus 4 ~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 4 RIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 45789999999999999999999999999889999999999963 6789999999999999999999986422 24
Q ss_pred cEEEEEEeecCCC--C-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHF--V-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~--~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||.+.+ + +++||++.++|.++..+.....|++|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 6899999999875 3 899999999999998888889999884
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=157.57 Aligned_cols=115 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEe-cccCC-CCc
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SPN 347 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~~ 347 (777)
+.+|++.|++..+.|.|+|++|+||++.+.+|.+||||++.+.+ ++.+|+++++ +||+|||+|.|. +...+ ...
T Consensus 4 ~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~ 82 (124)
T cd08389 4 DLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM 82 (124)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence 35789999999999999999999999999889999999988855 6789999888 999999999998 55322 346
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
+|.|+|||++.++ +++||++.|+|+++..+.....|++|++
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 8999999999987 9999999999999988888899999973
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=154.30 Aligned_cols=115 Identities=27% Similarity=0.428 Sum_probs=98.2
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
...|+|+|++|+||+.. +.+||||+++++. +..+|++. +++||.|||+|.|.+.+. ....|.|.|||++.++ |
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCC
Confidence 35799999999999874 4789999999987 45789974 689999999999986543 2257999999999886 9
Q ss_pred ceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEec
Q 004037 362 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE 403 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~ 403 (777)
++||++.++|+.+..+...+.|++|.+. ..|+|+|+++|.+.
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 9999999999999988888999999753 35999999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=154.20 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=99.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
.|+|+|++|++|+.++.++.+||||+++++.++++|+++++|+||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 3899999999999999889999999999999999999999999999999999998753 2568999999999887 8999
Q ss_pred EEEEEeCCcccCCCccceeeeccC---------CCCcEEEEEE
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI 398 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~---------~~~GeI~LsL 398 (777)
|++.++|+++..+.....|+.|.+ ...|.|++.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999987777789999975 2368887765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-17 Score=154.93 Aligned_cols=114 Identities=27% Similarity=0.525 Sum_probs=101.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC--CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~ 348 (777)
..|++.|..+.+.|+|+|++|++|+..+..+.+||||++++.+ ++++|+++++++||.|||+|.|.+...+ ....
T Consensus 5 l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~ 84 (125)
T cd08386 5 IQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRV 84 (125)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCE
Confidence 4688999999999999999999999999889999999999943 6789999999999999999999753221 2357
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|+|||+|.++ +++||++.++|+++..+.....|+.|+
T Consensus 85 l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 85 LYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 999999999886 899999999999999888889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=155.50 Aligned_cols=113 Identities=32% Similarity=0.464 Sum_probs=97.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC--CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~ 346 (777)
..+++.|+...+.|.|+|++|++|+..+.++.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ..
T Consensus 5 l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~ 84 (125)
T cd04031 5 IQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence 4578899999999999999999999999889999999999965 5789999999999999999999864321 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|+|||++.++ +++||++.++|++... .....||+|+
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 68999999999887 8999999999998333 3356899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=155.75 Aligned_cols=110 Identities=31% Similarity=0.479 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG 365 (777)
.|+|+|++|++|+.+ .+||||+++++.++.+|+++++|+||.|||+|.|.+... ....|.|+|||+|..++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence 489999999999876 789999999999999999999999999999999998643 357899999999988899999
Q ss_pred EEEEeCCcccCCC-----ccceeeeccCCC----CcEEEEEEEE
Q 004037 366 DCTINISDLRDGQ-----RHDMWIPLQNIK----IGRLHLAITV 400 (777)
Q Consensus 366 ~v~I~L~~L~~~~-----~~~~W~~L~~~~----~GeI~LsL~y 400 (777)
++.++|+++.... ....|++|.... .|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987532 256899998743 6999999976
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=157.32 Aligned_cols=108 Identities=23% Similarity=0.410 Sum_probs=93.8
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEE
Q 004037 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (777)
Q Consensus 276 fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~ 350 (777)
++++| ..+.|.|+|++|+||++++ .|.+||||++++.+ .+.||+++++++||.|||+|.|.+...+....|.
T Consensus 5 l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~ 81 (119)
T cd08685 5 LSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLL 81 (119)
T ss_pred EEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEE
Confidence 45555 6789999999999999998 88999999999975 3679999999999999999999987533445799
Q ss_pred EEEeecCCCC--CceeEEEEEeCCcccCCCccceeeec
Q 004037 351 IEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 351 V~V~D~D~~~--Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
|.|||++... +++||.+.|+|.++..+.....||.|
T Consensus 82 v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 82 VTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 9999999864 68999999999999877778899976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=155.93 Aligned_cols=102 Identities=29% Similarity=0.482 Sum_probs=89.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C----C--eEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeec
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL-G----P--YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK 356 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L-g----~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~ 356 (777)
.|+|+|++|++|+..+ .|.+||||++++ + . ++++|+++++|+||+|||+|.|.+...+ ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 499999999998 3 1 4679999999999999999999997532 235799999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|..+ +++||++.++|.++..++....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9876 8999999999999999888899999975
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-17 Score=153.96 Aligned_cols=113 Identities=24% Similarity=0.375 Sum_probs=99.9
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
.++++.|+...+.|.|+|++|++|+..+ ..+.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~ 82 (123)
T cd08521 3 IEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLET 82 (123)
T ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCC
Confidence 3688999999999999999999999988 788999999999853 4689999999999999999999987422 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeec
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
..|.|.|||++.++ +++||++.++|+++..+.....||+|
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 83 RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 58999999999886 89999999999999877778899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=152.29 Aligned_cols=117 Identities=23% Similarity=0.325 Sum_probs=101.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCc
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd 362 (777)
+.++|+|+|++|++|+..+..|.+||||++.+++++++|+++++++||.|||+|.|.+.. ....|.|+|||++..+|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 467999999999999999989999999999999999999999999999999999998765 356899999999988899
Q ss_pred eeEEEEEeCCcccCCCccceeeeccC-------CCCcEEEEEEEEEec
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLEE 403 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~-------~~~GeI~LsL~y~p~ 403 (777)
+||++.+++..+.. ....|++|.. ...|+|.+++.+.+.
T Consensus 79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 99999999987643 3457777742 348999999987654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=155.64 Aligned_cols=114 Identities=33% Similarity=0.473 Sum_probs=99.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-------k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
.|+|+|++|++|+..+..|.+||||++++.+. +++|+++++|+||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence 38999999999999998899999999999654 5799999999999999999999875 24679999999999
Q ss_pred CC-CceeEEEEEeCCcccCCCc------cceeeeccCC-----CCcEEEEEEEEE
Q 004037 359 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 359 ~~-Dd~IG~v~I~L~~L~~~~~------~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
++ +++||++.+++.++..+.. ...|++|++. ..|+|+|++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 86 8999999999999886543 4689999852 489999999874
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.8e-17 Score=152.31 Aligned_cols=111 Identities=26% Similarity=0.511 Sum_probs=97.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|.|+|++|++|++++..|.+||||++.++.. .++|+++++|+||.|||.|.|.+.. ..+.|.|.|||++.++ |++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence 7899999999999999999999999999874 5799999999999999999999874 3468999999999986 9999
Q ss_pred EEEEEeCCcccCC-CccceeeeccCCC-----CcEEEEEEE
Q 004037 365 GDCTINISDLRDG-QRHDMWIPLQNIK-----IGRLHLAIT 399 (777)
Q Consensus 365 G~v~I~L~~L~~~-~~~~~W~~L~~~~-----~GeI~LsL~ 399 (777)
|++.++++.+... ...+.|++|++.. .|+|++.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999888754 3468999997632 899998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=149.49 Aligned_cols=112 Identities=30% Similarity=0.573 Sum_probs=99.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|.|+|++|++|+..+..+.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence 6899999999999999989999999999999988999999999999999999999864 3578999999999865 999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
||++.++|.++..+. ..|+.|... ..|+|++++.+
T Consensus 79 iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNGE--RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCCC--ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999987653 579999653 48999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=152.13 Aligned_cols=114 Identities=32% Similarity=0.566 Sum_probs=100.7
Q ss_pred eeEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~----------G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
.|.|+|+|++|++|+..+.. |.+||||++++++++ .+|+++.+|+||.|||+|.|.+.. ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 47899999999999988863 689999999998854 699999999999999999999973 4689999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccC--CCccceeeeccCCCCcEEEEEEEEEe
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~--~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
|||++.++ +++||++.++|+++.. +...+.|++|+ ..|+|+++++|..
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 99998876 8999999999999887 56678999998 5799999999864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=151.95 Aligned_cols=114 Identities=27% Similarity=0.420 Sum_probs=101.6
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
.++++.|+...+.|.|+|++|++|+..+ ..+.+||||++++.+ +..+|+++++++||.|||+|.|.+.... ....
T Consensus 3 l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~ 82 (123)
T cd08390 3 LWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT 82 (123)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence 4688999999999999999999999998 688999999999854 5689999999999999999999987422 2358
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
|.|.|||++..+ +++||++.++|+++........|++|+
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999999999886 899999999999999988889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.4e-17 Score=150.25 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=100.2
Q ss_pred eeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 284 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
.|.|+|+|++|++|+..+ ..+.+||||++++++ ..++|+++.+++||.|||+|.|.+.. ..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence 478999999999999765 457799999999987 78999999999999999999999873 4678999999999886
Q ss_pred -CceeEEEEEeCCcccCCCccc-eeeecc--CCCCcEEEEEEEEEe
Q 004037 361 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE 402 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~~~-~W~~L~--~~~~GeI~LsL~y~p 402 (777)
|++||++.++|.++..+.... .|..|. ++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999998876654 344443 356899999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-17 Score=160.97 Aligned_cols=96 Identities=33% Similarity=0.577 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
..|.|+|+|++|.+|..+|..+++||||.+.+++++.||+++.+++||+|||+|.|.+.+ ....|.+.|||+|.++ |
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD--PNTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC--CCceEEEEEEeCCCCCcc
Confidence 579999999999999999988999999999999999999999999999999999999986 4578999999999998 9
Q ss_pred ceeEEEEEeCCcccCCCcc
Q 004037 362 DTLGDCTINISDLRDGQRH 380 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~ 380 (777)
|+||.++|+|..+......
T Consensus 82 D~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred cccceeeeccHHHHHHhhh
Confidence 9999999999988776543
|
|
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-16 Score=151.05 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=99.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC--------CCCcEEEEEEeecC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW--------DSPNVLVIEVRDKD 357 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~--------e~~~~L~V~V~D~D 357 (777)
.|+|+|++|++|+.+|..|.+||||++.++.++++|+++++|+||.|||+|.|.+... +....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 6899999999999999999999999999999999999999999999999999975321 12357999999999
Q ss_pred CCC-CceeEEEEE-eCCcccC---CCccceeeeccC--CCCcEEEEEEEEEec
Q 004037 358 HFV-DDTLGDCTI-NISDLRD---GQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (777)
Q Consensus 358 ~~~-Dd~IG~v~I-~L~~L~~---~~~~~~W~~L~~--~~~GeI~LsL~y~p~ 403 (777)
..+ |++||++.+ ++..+.. .....+|++|.. ...|+|++++.+.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 899999987 4444443 356789999974 358999999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=147.29 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG 365 (777)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++++|.||.|||+|.|.+... ..+.|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence 3889999999999998889999999999999999999999999999999999999863 34689999999987 89999
Q ss_pred EEEEeCCcccCCC--ccceeeeccC
Q 004037 366 DCTINISDLRDGQ--RHDMWIPLQN 388 (777)
Q Consensus 366 ~v~I~L~~L~~~~--~~~~W~~L~~ 388 (777)
++.++|.++.... ..+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999987654 5689999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.71 Aligned_cols=95 Identities=23% Similarity=0.359 Sum_probs=83.9
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 285 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~----G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
|+|.|+|++|++|++.+.. +.+||||+++++.+++||+++++++||+|||+|.|.+...+....|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999987632 358999999999999999999999999999999999875444568999999999987
Q ss_pred -CceeEEEEEeCCcccCCCc
Q 004037 361 -DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~ 379 (777)
|++||++.++|+++..+..
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCcceEEEEEEHHHHHhhCC
Confidence 9999999999999876543
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.4e-17 Score=153.42 Aligned_cols=112 Identities=29% Similarity=0.457 Sum_probs=97.5
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
.++|.|....+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ....
T Consensus 3 ~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~ 82 (133)
T cd08384 3 LVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKT 82 (133)
T ss_pred EEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCE
Confidence 578999999999999999999999999989999999999964 4689999999999999999999987432 2358
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.|+|||+|..+ +++||++.+++.. .+.....|+.+..
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999999876 8999999999985 4445678998754
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=146.99 Aligned_cols=115 Identities=29% Similarity=0.501 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-C
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-D 361 (777)
.|+|+|++|++|+..+..+.+||||++.+.+ ..++|+++++++||.|||+|.|.+... ....|.|+|||++..+ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 6899999999999999999999999999864 468999999999999999999998853 3568999999999885 8
Q ss_pred ceeEEEEEeCCcccC---CCccceeeeccCCCCcEEEEEEEEEec
Q 004037 362 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLEE 403 (777)
Q Consensus 362 d~IG~v~I~L~~L~~---~~~~~~W~~L~~~~~GeI~LsL~y~p~ 403 (777)
++||++.++|+.+.. +...+.|++|.+ .|+|++.++|.-.
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEeee
Confidence 999999999997643 335678999975 8999999988643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-16 Score=147.54 Aligned_cols=102 Identities=27% Similarity=0.521 Sum_probs=90.3
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-cceeeEecccCC-CCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~W-nEtF~f~V~~~e-~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|++|++|+.++. .|.+||||++++++++++|+++++++||.| ||+|.|.+...+ ..+.|.|+|||++.++ ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6799999999999884 789999999999999999999999999999 999999987532 2368999999999987 89
Q ss_pred eeEEEEEeCCcccC---CCccceeeeccC
Q 004037 363 TLGDCTINISDLRD---GQRHDMWIPLQN 388 (777)
Q Consensus 363 ~IG~v~I~L~~L~~---~~~~~~W~~L~~ 388 (777)
+||++.++|.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999977 345789999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.7e-16 Score=147.56 Aligned_cols=115 Identities=22% Similarity=0.348 Sum_probs=101.4
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC-CCCcEEEEEEeecCCCC-CceeEEEE
Q 004037 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT 368 (777)
Q Consensus 291 VieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~-e~~~~L~V~V~D~D~~~-Dd~IG~v~ 368 (777)
|++|++|+. ..|.+||||+++++..+++|++++++.||.|||+|.|.+... .....|.|+|||++..+ |++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 679999988 678999999999999999999999999999999999998743 24578999999999886 89999999
Q ss_pred EeCCcccCCCccceeeeccCC----CCcEEEEEEEEEecCCCc
Q 004037 369 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEESAKQ 407 (777)
Q Consensus 369 I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~y~p~s~~l 407 (777)
++|+++..+.....|++|.+. ..|+|+++++|.|.....
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAV 122 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence 999999988888899999643 268999999999876543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=156.59 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=97.6
Q ss_pred ceeeeecC------------ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceee
Q 004037 275 WFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFN 337 (777)
Q Consensus 275 ~fsL~y~~------------~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~ 337 (777)
.|+|.|.+ ..|.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++++|+||.|||+|.
T Consensus 5 ~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~ 84 (162)
T cd04020 5 KVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFV 84 (162)
T ss_pred EEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEE
Confidence 46677777 5699999999999999999889999999999843 678999999999999999999
Q ss_pred EecccCC--CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 338 IPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 338 f~V~~~e--~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.+...+ ....|.|+|||+|.++ +++||++.+++.++......+.|+.|.+
T Consensus 85 f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 85 YDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9854211 2357999999999987 9999999999999987777788888864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-17 Score=155.43 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=97.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
.+|+|.|.+..+.|.|+|++|+||+..+..|.+||||++++.+ .+.||+++++|+||+|||+|.|.++..+ ...
T Consensus 4 i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~ 83 (136)
T cd08406 4 ILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDL 83 (136)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCc
Confidence 4689999999999999999999999999899999999999954 2678999999999999999999987432 346
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|.|||+|.++ +++||++.+.... .+...+.|..+..
T Consensus 84 ~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 84 SLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 8999999999887 9999999997663 4555677877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=154.37 Aligned_cols=101 Identities=30% Similarity=0.363 Sum_probs=87.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecc------------cC-C-CC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS------------TW-D-SP 346 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~------------~~-e-~~ 346 (777)
.|.|+|++|++|+. .+|.+||||++++.+ ++.+|+++++|+||+|||+|.|.+. +. + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 37899999999988 578999999999976 6789999999999999999999984 11 1 12
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCC-CccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~-~~~~~W~~L~~ 388 (777)
..|.|.|||++.++ |++||++.|+|..+..+ .....||+|+.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 57999999999886 99999999999999887 56789999975
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=147.88 Aligned_cols=109 Identities=33% Similarity=0.537 Sum_probs=94.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC------
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------ 359 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~------ 359 (777)
.|+|+|++|++|+..|..|.+||||+++++++.++|+++++|+||.|||+|.|.+.. ....|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~--~~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN--SSDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC--CCCEEEEEEEECCCCcccccc
Confidence 689999999999999988999999999999999999999999999999999998864 246899999999852
Q ss_pred ------CCceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEE
Q 004037 360 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI 398 (777)
Q Consensus 360 ------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL 398 (777)
.+++||++.+++.++.. ....|+.|+.. .+|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHccC--CCCeEEECccCCCCCcEeEEEEEEC
Confidence 38999999999998753 45799999852 378888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=154.12 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=95.5
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e- 344 (777)
...|+|.|.+..+.|.|+|++|+||+.++. .+.+||||++++.+ .+.||+++++++||+|||+|.|.++..+
T Consensus 3 el~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L 82 (138)
T cd08407 3 EVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELL 82 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHh
Confidence 346899999999999999999999999983 35589999999966 3679999999999999999999998533
Q ss_pred CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 345 ~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
....|.|+|||+|.++ +++||++.+++.. .+.....|..+.
T Consensus 83 ~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 83 AASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred CccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 2457999999999987 9999999999974 444556777664
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=146.25 Aligned_cols=109 Identities=25% Similarity=0.447 Sum_probs=94.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC---Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~---Dd 362 (777)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++++||.|||+|.|.+.. .+.|.|+|||++.++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 78999999999999989999999999996 588999999999999999999999974 478999999999875 47
Q ss_pred eeEEEEEeCCcccCCC-ccceeeeccCCC-------CcEEEEEE
Q 004037 363 TLGDCTINISDLRDGQ-RHDMWIPLQNIK-------IGRLHLAI 398 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~-~~~~W~~L~~~~-------~GeI~LsL 398 (777)
+||++.+++.++.... ....|++|+... .|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999987544 347799995422 67887765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=145.41 Aligned_cols=100 Identities=27% Similarity=0.533 Sum_probs=87.3
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC--CCcEEEEEEeecCC
Q 004037 285 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH 358 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~ 358 (777)
|+|+|+|++|++|+..+.. +.+||||++++.+ ..++|+++++|+||.|||+|.|.+...+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999853 5689999999999999999999876432 24689999999999
Q ss_pred CC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 359 FV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 359 ~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
++ |++||++.++|.++.. ...|++++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 87 9999999999999984 44788875
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=180.08 Aligned_cols=165 Identities=27% Similarity=0.383 Sum_probs=139.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCce
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~ 363 (777)
..|.|.|.+|+||++.+..|.+||||.|.++. ..++|.++.+++.|.|.|+|+|.++. ..+.|.|.|||.|...|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccccccccc
Confidence 36889999999999999999999999999998 68999999999999999999999986 4678999999999334999
Q ss_pred eEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEEecCCCccc-----------------cCCCcCCccccc
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKE 421 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~ 421 (777)
||.+.|.-.+|......+.|+.|+... +|+|||++.+.+....-+. .++++.+.+
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~--- 159 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL--- 159 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee---
Confidence 999999999998877889999998743 8999999998875543211 234433333
Q ss_pred CCCccccccccceeccCCCCcccccccccccCCC
Q 004037 422 GMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 422 ~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
+|..+.+.++|.+++.|.||.|||.+++++-.+
T Consensus 160 -~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~ 192 (800)
T KOG2059|consen 160 -CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTRE 192 (800)
T ss_pred -cccchhhccccceeeeccCcchhhheeeeeccc
Confidence 677777779999999999999999999887433
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-16 Score=150.36 Aligned_cols=115 Identities=25% Similarity=0.410 Sum_probs=97.7
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..+++.|.+..|.|.|+|++|++|+.++..|.+||||++++++ .+++|+++++++||.|||+|.|.+...+. ..
T Consensus 4 l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~ 83 (136)
T cd08402 4 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKV 83 (136)
T ss_pred EEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCC
Confidence 4688999999999999999999999999999999999999953 46789999999999999999999874222 24
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
.|.|+|||++.++ |++||++.+++... +.....|+++...+
T Consensus 84 ~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~~ 125 (136)
T cd08402 84 HLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLASP 125 (136)
T ss_pred EEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhCC
Confidence 7999999999987 89999999999853 44567888876543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=145.90 Aligned_cols=117 Identities=38% Similarity=0.579 Sum_probs=101.6
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVL 349 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L 349 (777)
.+++.|.. +.|+|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.+|.|||+|.|.+...+..+.|
T Consensus 5 ~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l 82 (131)
T cd04026 5 YLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRL 82 (131)
T ss_pred EEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEE
Confidence 35566665 89999999999999988888999999999963 689999999999999999999998754345689
Q ss_pred EEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEE
Q 004037 350 VIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (777)
Q Consensus 350 ~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (777)
.|+|||++.++ +++||++.++|+++... ..+.|++|.+.+.|+.
T Consensus 83 ~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 83 SIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 99999999876 89999999999999855 6789999998888864
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-16 Score=149.94 Aligned_cols=113 Identities=25% Similarity=0.357 Sum_probs=97.7
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|....+.|.|+|++|++|+..|..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ...
T Consensus 4 l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~ 83 (136)
T cd08404 4 LLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDI 83 (136)
T ss_pred EEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCC
Confidence 4678999999999999999999999999999999999999853 3678999999999999999999987422 245
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||+|.++ +++||++.+++.. .+.....|++|..
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 84 SVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred EEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 7999999999987 9999999999998 3455678998854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=144.55 Aligned_cols=104 Identities=25% Similarity=0.355 Sum_probs=89.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCcee
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~I 364 (777)
+.|.|+|++|++|+..+ ..||||+|.+++++.+|++.++ .||.|||+|.|.+.. ....|.|+|||+|.++||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCce
Confidence 68999999999997644 5699999999999999999988 499999999999975 33459999999998889999
Q ss_pred EEEEEeCCcccCCCcc--ceeeeccC---CCCcEE
Q 004037 365 GDCTINISDLRDGQRH--DMWIPLQN---IKIGRL 394 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~--~~W~~L~~---~~~GeI 394 (777)
|++.|+|+++..+... .+||+|.. .+.|++
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999998876554 89999975 235554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-16 Score=150.15 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=90.3
Q ss_pred EEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 287 ARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G--------------~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
|.|+|++|++|+.+|..+ .+||||++.+++++.+|+++++++||+|||+|.|.+......+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 689999999999999999999999999999999987543345789999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCc-------cceeeeccCCCCc
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG 392 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~-------~~~W~~L~~~~~G 392 (777)
|||+|..+ |++||++.++|.++..... ...|+.|.+..++
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 99999985 9999999999998876542 3578888765554
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-16 Score=148.93 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=96.4
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|.+..+.|.|+|++|++|+..+..|.+||||++++.+ .+++|+++++++||.|||+|.|.+.... ...
T Consensus 4 l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~ 83 (136)
T cd08405 4 LLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRET 83 (136)
T ss_pred EEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCC
Confidence 4688999999999999999999999999899999999999832 4679999999999999999999986322 235
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||++.++ +++||++.+++... +...+.|++|..
T Consensus 84 ~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 84 TLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 7999999999987 89999999999975 444567777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-16 Score=147.95 Aligned_cols=113 Identities=25% Similarity=0.446 Sum_probs=95.9
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
.+|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+.... ...
T Consensus 3 l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~ 82 (134)
T cd08403 3 LMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNV 82 (134)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCC
Confidence 4689999999999999999999999999999999999999843 3679999999999999999999986422 224
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||++.++ +++||++.+++. ..+.....|+.+..
T Consensus 83 ~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 83 SLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred EEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 6999999999987 999999999987 33444677887743
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-16 Score=149.58 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=97.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~ 345 (777)
+..++|.|+...+.|.|+|++|+||+.++..|.+||||++++.+ .+.||+++++++||+|||+|.|.+...+ .
T Consensus 3 ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 3 ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred eEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 34688999999999999999999999999999999999999964 2579999999999999999999998532 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
...|.|.|||++.++ +++||++.+++..... ...++|..+..
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 458999999999876 9999999999874432 23467887753
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=148.69 Aligned_cols=102 Identities=32% Similarity=0.559 Sum_probs=90.2
Q ss_pred ecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----------------------------eEEEeeeecCCCCC
Q 004037 280 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----------------------------YRFRTKTQRKTLSP 330 (777)
Q Consensus 280 y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----------------------------~k~kTkVi~~TlnP 330 (777)
..++.+.|.|+|++|++|+++|.+|.+||||++.+++ +.++|+++.+|+||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 3578999999999999999999999999999999864 23789999999999
Q ss_pred cccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeec
Q 004037 331 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
.|||+|.|.+... ..+.|.|+|||++ +++||++.++|+++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999998753 3578999999998 8999999999999984 447899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-15 Score=144.89 Aligned_cols=115 Identities=27% Similarity=0.423 Sum_probs=100.2
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|++..+.|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||.|||+|.|.+.... ...
T Consensus 3 i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~ 82 (134)
T cd00276 3 LLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEV 82 (134)
T ss_pred EEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCc
Confidence 4578999999999999999999999998889999999999965 3679999999999999999999987532 246
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
.|.|+|||.+.++ +++||.+.++|++ .+...+.|++|....
T Consensus 83 ~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 83 SLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred EEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 8999999999876 8999999999998 555678999997654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-15 Score=146.71 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=94.0
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..++|.|.+..|.|.|+|++|++|+..|..|.+||||++++.+ .+.+|+++++|+||.|||+|.|.+...+. ..
T Consensus 3 i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~ 82 (135)
T cd08410 3 LLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENV 82 (135)
T ss_pred EEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCC
Confidence 4688999999999999999999999999999999999999833 46799999999999999999999864222 34
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|+|||+|..+ +++||++.+....... ...++|+.|.+
T Consensus 83 ~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 83 SLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 7999999999876 9999999876533322 23577888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=146.47 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=94.3
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCcccceeeEecccCCCCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~Tl-nP~WnEtF~f~V~~~e~~~ 347 (777)
..|+|.|.+..|.|+|+|++|+||++++..+.+||||++++.. .+.||+++++|+ ||.|||+|.|.++..+...
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 3589999999999999999999999886667789999999843 578999999996 6999999999998654445
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
.|.|.|||++..+ +++||++.+..+... +...++|.++.
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~~~~-~~~~~hW~~m~ 122 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSDSSS-SEAVEQWKDTI 122 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCccCC-chhhhhHHHHH
Confidence 8999999999876 999999999997632 23356777654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=146.78 Aligned_cols=115 Identities=17% Similarity=0.232 Sum_probs=98.1
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..++|.|.+..+.|.|+|++|+||+..+ .+.+||||++.+.+ .+.+|+++++++||.|||+|.|.+...+ ...
T Consensus 4 i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~ 82 (137)
T cd08409 4 IQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTA 82 (137)
T ss_pred EEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCcc
Confidence 3578999999999999999999999988 78899999999864 3679999999999999999999997432 235
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
.|.|.|||.+..+ +++||++.++......+...+.|..+...
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~ 125 (137)
T cd08409 83 SLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSK 125 (137)
T ss_pred EEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhC
Confidence 8999999999876 99999999997766666667788877543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=139.52 Aligned_cols=107 Identities=30% Similarity=0.402 Sum_probs=94.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|+|++|++|+..+..+.+||||+++++. ..++|++++++.||.|||+|.|.+... .+.|.|+|||++.++ |+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 68999999999999999889999999999976 679999999999999999999988753 468999999999987 88
Q ss_pred eeEEEEEeCCcccCCCccceeeeccCCCCcEE
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (777)
+||++.++|.++..+ ..+.||.|.+...+.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 5678888877655544
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=138.70 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=94.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcccceeeEecccCC--CCcEEEEEEeecCCCC-
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e--~~~~L~V~V~D~D~~~- 360 (777)
|.|.|+|++|++|+..+..+.+||||+++++.+.++|++.++ ++||.|||+|.|.+.... ..+.|.|+|||.+.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999988899999999999998899999875 999999999999998642 2468999999999886
Q ss_pred CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 361 DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
+++||++.++|.++..+...+.|+.|...
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999888888999999863
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-15 Score=143.93 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.2
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcccceeeEecccCC--
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-- 344 (777)
..+++.|+...+.|+|+|++|++|+..+..|.+||||++++.+ .+++|+++++|+||.|||+|.|.+....
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 3577889999999999999999999999889999999999963 4789999999999999999999987421
Q ss_pred -CCcEEEEEEeecCCCC-CceeEEEEEeCCcccC
Q 004037 345 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (777)
Q Consensus 345 -~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~ 376 (777)
....|.|+|||++.++ +++||++.++|+++..
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2458999999999987 9999999999998874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.61 E-value=5e-15 Score=139.00 Aligned_cols=113 Identities=33% Similarity=0.427 Sum_probs=96.5
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEeccc-CC-CC
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD-SP 346 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~-~e-~~ 346 (777)
.++++.|++..+.|+|+|++|++|+..+..+.+||||++++.+ .+.+|+++++++||.|||+|.|.... .+ ..
T Consensus 4 ~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~ 83 (123)
T cd04035 4 LEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQR 83 (123)
T ss_pred EEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCC
Confidence 4678899999999999999999999998889999999999843 47899999999999999999996332 11 23
Q ss_pred cEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeec
Q 004037 347 NVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (777)
Q Consensus 347 ~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L 386 (777)
..|.|+|||++.+++++||++.++|+++..+...+.|+.|
T Consensus 84 ~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 84 KTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 5899999999888889999999999999987776666543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=137.36 Aligned_cols=100 Identities=24% Similarity=0.445 Sum_probs=88.0
Q ss_pred CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccC-CCc
Q 004037 302 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR 379 (777)
Q Consensus 302 ~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~-~~~ 379 (777)
.+|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ....|.|.|||.+.+++++||.+.++|+++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 478999999999987 468999999999999999999998753 35679999999998889999999999999854 344
Q ss_pred cceeeeccCCCCcEEEEEEEEEe
Q 004037 380 HDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 380 ~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
.+.|++|.+...|+|++++.|.|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 68999999878999999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=141.99 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=83.1
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
....|.|+|+|++|++|+. +..+.+||||+|++++++++|+++++++||+|||+|.|........+.|.|+|||+|.++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 3567999999999999984 667889999999999999999999999999999999997544334678999999999986
Q ss_pred -CceeEEEEEeCCccc
Q 004037 361 -DDTLGDCTINISDLR 375 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~ 375 (777)
|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 999999999999655
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=137.09 Aligned_cols=101 Identities=24% Similarity=0.357 Sum_probs=87.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCC---CCcEEEEEEeecCCCC
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e---~~~~L~V~V~D~D~~~ 360 (777)
...|+|+|++|++|+ +|.+||||++++++++.+|+++++++||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 457999999999998 578999999999999999999999999999999999875321 1357999999999886
Q ss_pred -CceeEEEEEeCCcccCCCc---cceeeeccC
Q 004037 361 -DDTLGDCTINISDLRDGQR---HDMWIPLQN 388 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~---~~~W~~L~~ 388 (777)
+++||++.++|+++..+.. ...|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 8999999999999976533 577999853
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.1e-15 Score=140.61 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=94.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCcccceeeEecccCC---CCcEEEEEEeecCCCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~-~TlnP~WnEtF~f~V~~~e---~~~~L~V~V~D~D~~~ 360 (777)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4889999999999998889999999999988 899999975 5899999999999997642 2578999999999865
Q ss_pred -CceeEEEEEeCCcccCCCc-----cceeeeccC---CCCcEEEE
Q 004037 361 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL 396 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~-----~~~W~~L~~---~~~GeI~L 396 (777)
|++||++.++|.++..+.. ...|+.|.. ...|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999999999887654 368999975 34787764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-16 Score=169.15 Aligned_cols=115 Identities=35% Similarity=0.532 Sum_probs=102.8
Q ss_pred eeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 278 VDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 278 L~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
|+.......|+|+|.+|+||.++|.+|.+||||++.+-+ .+.+|++++.|+||+|||+|+|.+.+.+..+.|.|+
T Consensus 173 l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiE 252 (683)
T KOG0696|consen 173 LEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIE 252 (683)
T ss_pred EEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEE
Confidence 333445678999999999999999999999999999965 578999999999999999999999987777899999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcE
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~Ge 393 (777)
|||||+.+ +||||..++.+++|.... .+.||.|.+...|+
T Consensus 253 vWDWDrTsRNDFMGslSFgisEl~K~p-~~GWyKlLsqeEGE 293 (683)
T KOG0696|consen 253 VWDWDRTSRNDFMGSLSFGISELQKAP-VDGWYKLLSQEEGE 293 (683)
T ss_pred EecccccccccccceecccHHHHhhcc-hhhHHHHhhhhcCc
Confidence 99999987 999999999999998754 67999998877776
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=142.72 Aligned_cols=118 Identities=22% Similarity=0.244 Sum_probs=95.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcccceeeEecccCC-------CCcEEEEE
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-----g~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-------~~~~L~V~ 352 (777)
+.|+|....+-+|+..+.++.+||||++++ .++++||+++++|+||+|||+|.|.+.... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 444554444444778888889999999997 237999999999999999999999987431 13579999
Q ss_pred EeecCCC--CCceeEEEEEeCCcccCCCccceeeeccC-C--CCcEEEEEEEEEe
Q 004037 353 VRDKDHF--VDDTLGDCTINISDLRDGQRHDMWIPLQN-I--KIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~--~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-~--~~GeI~LsL~y~p 402 (777)
|||++.+ +|++||++.++|+.+........|++|.. . ..|+|++++....
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecC
Confidence 9999986 39999999999999988777778999864 2 3899999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=134.85 Aligned_cols=101 Identities=39% Similarity=0.625 Sum_probs=91.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++++|.|||+|.|.+... ..+.|.|+|||++..+ +++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 579999999999998889999999999976 568999999999999999999998753 3578999999999886 9999
Q ss_pred EEEEEeCCcccCCCccceeeeccC
Q 004037 365 GDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|++.+++.++..+...+.|++|..
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcC
Confidence 999999999988878899999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.2e-15 Score=172.35 Aligned_cols=122 Identities=23% Similarity=0.372 Sum_probs=106.4
Q ss_pred ceeEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EE
Q 004037 283 PVAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RF 319 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~------------------------------------------~G~sDPYV~v~Lg~~-k~ 319 (777)
-.|.|.++|.+|++|+.+|. .+++||||+|.++.+ +.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 47999999999999986332 246799999999874 67
Q ss_pred EeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCC------CCcE
Q 004037 320 RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGR 393 (777)
Q Consensus 320 kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~Ge 393 (777)
||+++++++||+|||+|.|.+... ...|.|+|||+|.+++++||++.|||.++..+...+.|++|.+. ..|+
T Consensus 92 RTrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k 169 (868)
T PLN03008 92 RTRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA 169 (868)
T ss_pred eEEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence 999999999999999999999863 46899999999999999999999999999999989999999652 3689
Q ss_pred EEEEEEEEecCCC
Q 004037 394 LHLAITVLEESAK 406 (777)
Q Consensus 394 I~LsL~y~p~s~~ 406 (777)
|+|+++|.|....
T Consensus 170 l~v~lqf~pv~~~ 182 (868)
T PLN03008 170 IFIDMKFTPFDQI 182 (868)
T ss_pred EEEEEEEEEcccc
Confidence 9999999997654
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=140.02 Aligned_cols=93 Identities=31% Similarity=0.592 Sum_probs=85.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
.|.|+|+|++|++|+..+. +.+||||++++++++++|+++++++||.|||+|.|.+... ...|.|+|||++.++ |+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 3789999999999999887 8999999999999999999999999999999999999863 578999999999987 99
Q ss_pred eeEEEEEeCCcccCCCc
Q 004037 363 TLGDCTINISDLRDGQR 379 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~ 379 (777)
+||++.++|.++.....
T Consensus 78 ~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 78 SMGEAEIDLEPLVEAAK 94 (145)
T ss_pred EEEEEEEEHHHhhhhhh
Confidence 99999999998876543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=140.42 Aligned_cols=102 Identities=28% Similarity=0.438 Sum_probs=90.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCcccceeeEecccCC--------------CCcE
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV 348 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--------------~~~~ 348 (777)
|+|+|++|++|+.+ ..|.+||||+++++ .++++|+++.++.||.|||+|.|.+.... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 67899999999999999999999987531 2458
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
|.|+|||++.++ +++||++.++|.++........|++|+..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999985 99999999999999877778999999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=131.86 Aligned_cols=108 Identities=32% Similarity=0.461 Sum_probs=86.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCC-CCcEEEEEEeecCCCC-Cce
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-DDT 363 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~L~V~V~D~D~~~-Dd~ 363 (777)
|.|+|++|++|+.. +.+||||+++++++ .++|+++++ +||.|||+|.|.+...+ ....|.|.+||.+... +..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999876 78999999999884 589999999 99999999999987533 2346888888887654 556
Q ss_pred eEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEE
Q 004037 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (777)
Q Consensus 364 IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y 400 (777)
+|.+. |..+..+...+.|++|.+. ..|+|+|++.|
T Consensus 78 ~g~v~--l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVA--LSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEE--ecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 66554 5555556678899999863 37999999876
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=135.52 Aligned_cols=115 Identities=29% Similarity=0.380 Sum_probs=90.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k--~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
+|+|+|++|++|+..|..|.+||||+++++++. .+|+++++|+||.|||+|.|.+... ..+.|.|+|||+|.++ |+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 479999999999999999999999999998854 5788899999999999999987643 3568999999999986 99
Q ss_pred eeEEEEEeCCcccCCCccceeeeccC--CCCcEEEEEEEEEe
Q 004037 363 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE 402 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~L~~--~~~GeI~LsL~y~p 402 (777)
+||++.++|++.... .+..|.-+.. ...|.++....+.|
T Consensus 80 ~iG~~~i~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFFS-KHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeecccccc-hHHHhccCCCcccccCceecCcccCc
Confidence 999999999977642 2223333322 24666665554443
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=133.29 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=90.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
..|.|+|.+|+ |...+..+.+||||+++++.+ .++|+++++|+||.|||+|.|.+.. .+.|.|+|||++..+ |+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence 36899999998 555555788999999999886 8999999999999999999999863 468999999999986 99
Q ss_pred eeEEEEEeCCcccCCCc-----cceeeeccCC------CCcEEEEEE
Q 004037 363 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI 398 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~-----~~~W~~L~~~------~~GeI~LsL 398 (777)
+||++.++|+++..... ...|++|... ..|+|++.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999875432 2348888532 278887765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=134.73 Aligned_cols=113 Identities=18% Similarity=0.274 Sum_probs=95.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC-C--
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F-- 359 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~-~-- 359 (777)
...|.|.|++|++|++++ +|||.|.|+..+ .||+++.++.||.|+|+|.|.... ....|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCcccc
Confidence 467999999999999764 899999999965 699999999999999999997654 24679999986543 2
Q ss_pred --CCceeEEEEEeCCcccCCCccceeeeccCCC-------------CcEEEEEEEEEec
Q 004037 360 --VDDTLGDCTINISDLRDGQRHDMWIPLQNIK-------------IGRLHLAITVLEE 403 (777)
Q Consensus 360 --~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-------------~GeI~LsL~y~p~ 403 (777)
++++||.+.||+.++..+...+.||+|.+.. .+.|++++.|.+.
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 4789999999999999888899999997521 3689999999874
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-14 Score=130.75 Aligned_cols=93 Identities=26% Similarity=0.381 Sum_probs=74.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec-----
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK----- 356 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~----- 356 (777)
|.|+|++|+||+ +.+||||++++++ .+++|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence 689999999996 5699999999964 46999999999999999999999873 57999999998
Q ss_pred --CCCC-CceeEEEEEeCCc--ccCCCccceeeecc
Q 004037 357 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387 (777)
Q Consensus 357 --D~~~-Dd~IG~v~I~L~~--L~~~~~~~~W~~L~ 387 (777)
|..+ |++||.+.+.|+. +.....+..-+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 3445 9999998888763 33333344445553
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=133.24 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=90.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-cceeeEecccCCCCcEEEE
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI 351 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------------~k~kTkVi~~TlnP~W-nEtF~f~V~~~e~~~~L~V 351 (777)
+..|++++|++|+ ++..|.+||||++++.+ ++++|+++++|+||.| ||+|.|.+.. .+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence 4678999999998 77789999999999954 3689999999999999 9999999863 468999
Q ss_pred EEeecCCCC----CceeEEEEEeCCcccCCC---ccceeeeccCC-----CCcEEEEEE
Q 004037 352 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI 398 (777)
Q Consensus 352 ~V~D~D~~~----Dd~IG~v~I~L~~L~~~~---~~~~W~~L~~~-----~~GeI~LsL 398 (777)
+|||++..+ +++||++.++|.++..+. ....|++|... -+|+|.+.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999986532 699999999999987553 35678998753 268887765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.8e-15 Score=140.41 Aligned_cols=111 Identities=10% Similarity=0.001 Sum_probs=89.1
Q ss_pred EEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCC-CcccccccccccCCC
Q 004037 393 RLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSVSSE 455 (777)
Q Consensus 393 eI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~-nP~~Ne~~~~~~~s~ 455 (777)
+|+++|+|.|+++++++ .++|++.+| .++.++++|+||+++++|+ ||+|||+|.|+++.+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~ 78 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ 78 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEE---EECCCcceeecCccEECCCCCceecceEEEeCCch
Confidence 78999999998887764 255888877 5667789999999999995 699999999999876
Q ss_pred CCcCcccceeeeecCC--ceee-ceEEecc---CcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIWVHQP---GSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~v~~p---g~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
. ..+...+++.|.++ .++. |-++-++ +.+..+||.+|+.+||+|++|||..
T Consensus 79 ~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 79 E-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred h-heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 4 46888899999875 5555 6554333 3344599999999999999999963
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.8e-14 Score=129.92 Aligned_cols=96 Identities=20% Similarity=0.339 Sum_probs=83.7
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC----C
Q 004037 291 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F 359 (777)
Q Consensus 291 VieAk~L~~~D~~G~sDPYV~v~Lg~~-------k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~----~ 359 (777)
.++|++|+..+..|.+||||++++.+. .++|+++++|+||.|||+|.|.+.. +..+.|.|+|||+|. +
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence 478999999998999999999999664 4899999999999999999998653 235689999999997 5
Q ss_pred C-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
+ +++||++.+++.++..+.....|+.|.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 5 999999999999998877777888884
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.7e-14 Score=177.66 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=105.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVD 361 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~D 361 (777)
-.|.|+|+|++|.+|. +..|.+||||++.++++ +.||++++++.||.|||+|+|.+..+...+.|+|+|||+|.|++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3699999999999998 44689999999999975 88999999999999999999887765445679999999999998
Q ss_pred ceeEEEEEeCCcccCCCccceeeeccC--CCCcE---EEEEEEEEe
Q 004037 362 DTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE 402 (777)
Q Consensus 362 d~IG~v~I~L~~L~~~~~~~~W~~L~~--~~~Ge---I~LsL~y~p 402 (777)
+.||++.|+|.++..++....||+|.+ .+.|+ |++++.|.+
T Consensus 2056 d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2056 SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 899999999999999999999999986 56898 999998864
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=125.21 Aligned_cols=111 Identities=23% Similarity=0.486 Sum_probs=92.5
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCcccceeeEecccCCCCcEEEEEEeec
Q 004037 286 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D--~~G~sDPYV~v~Lg------~~k~kTkVi~~Tl-nP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
.|+|+|++|++|+..+ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+...+ ...|.|+|||.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 6899999999999887 57899999999993 4678999988776 9999999999987432 35799999999
Q ss_pred CCCCCceeEEEEEeCCcccCCCccceeeeccC-----CCCcEEEEEEEE
Q 004037 357 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV 400 (777)
Q Consensus 357 D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~y 400 (777)
+..++++||++.++|+++..+. .|++|.+ ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 9888999999999999996543 5788864 236788888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-14 Score=149.52 Aligned_cols=235 Identities=20% Similarity=0.226 Sum_probs=174.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecc--cCCC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS--TWDS 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~--~~e~ 345 (777)
..||.+.|+.....+.++|..|++|++++.++..|||+++.+++ .+++|++..+++||.|||+-..... ..-.
T Consensus 81 ~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 81 ALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred chhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 35889999999999999999999999999999999999999987 4689999999999999987655432 2213
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCc--cceeeeccC----------CCCcEEEEEEEEEecCCCccc---
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR--HDMWIPLQN----------IKIGRLHLAITVLEESAKQGV--- 409 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~--~~~W~~L~~----------~~~GeI~LsL~y~p~s~~lsv--- 409 (777)
.+.+++.|+|.+.+. .+++|+..++|..+...+. ...|+.-.- ..+|+|.+++.|......+.+
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~i 240 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTII 240 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEE
Confidence 457899999999987 8999999999998876553 234443211 248999999988765443321
Q ss_pred -------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC-C-cee
Q 004037 410 -------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE-G-QQE 474 (777)
Q Consensus 410 -------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~-G-~ee 474 (777)
.++|++..+. -++.+.-++||.++|.|+||.||+.|+++..+..+-.....+.+-|.+ | ...
T Consensus 241 Rc~~l~ssDsng~sDpyvS~~l~---pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d 317 (362)
T KOG1013|consen 241 RCSHLASSDSNGYSDPYVSQRLS---PDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSND 317 (362)
T ss_pred EeeeeeccccCCCCCccceeecC---CCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCcc
Confidence 4778877774 455555678999999999999999999998777665555555554443 2 111
Q ss_pred e-ceEEecc--CcccccccccccCCCCcccceeeecCCC
Q 004037 475 T-GIWVHQP--GSEVAQTWEPRKGKNRRLDTLVRRVPNG 510 (777)
Q Consensus 475 ~-gi~v~~p--g~~v~~~w~~~~~~~r~~~~~~~~~~~~ 510 (777)
. |+...+. =.++-.||-.-+...+-+...||++..+
T Consensus 318 ~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 318 SIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred CCCcccccccccchhhcCccccccccccccccccccccc
Confidence 1 2221111 1245588888888888888999988754
|
|
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.9e-14 Score=133.99 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=91.3
Q ss_pred CcEEEEEEEEEecCCCccc------------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc
Q 004037 391 IGRLHLAITVLEESAKQGV------------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 452 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv------------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~ 452 (777)
.|+|+++|+|.+.++++.+ .+||++.+| ..+..+++++||+++++++||+|||.|.|..
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v 77 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWNEMIMFEL 77 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccccEEEEEC
Confidence 4899999999988776543 367787777 3445678899999999999999999999999
Q ss_pred CCCCCcCcccceeeeecCCc--eee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 453 SSEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~G~--ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.++...+...+++.|.++. ++. |-. ....|.+. +||.+|..+||+|+++||..
T Consensus 78 ~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~-~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 78 PSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTER-QHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred CHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHH-HHHHHHHhCCCCchhEEEEC
Confidence 99999998889999988843 444 433 23345554 99999999999999999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=119.77 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccC---CCCcEEEEEEeecCCC
Q 004037 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDHF 359 (777)
Q Consensus 289 VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~---e~~~~L~V~V~D~D~~ 359 (777)
+-.++|++|+..|..|.+||||++++.+ ..++|+++++++||.|| +|.|.+... +..+.|.|+|||++.+
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456999999999999999999999854 35899999999999999 788876432 2256899999999998
Q ss_pred C-CceeEEEEEeCCcccCCC
Q 004037 360 V-DDTLGDCTINISDLRDGQ 378 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~ 378 (777)
+ |++||++.++|+++....
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCC
Confidence 6 999999999999988543
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-12 Score=107.82 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=72.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|+|+|++|++|+..+..+..||||++.++. ..++|+++.++.+|.|||+|.|.+...+ ...|.|+|||++.++ |+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 789999999999988888999999999977 6799999999999999999999976543 345999999999998 99
Q ss_pred eeEEEE
Q 004037 363 TLGDCT 368 (777)
Q Consensus 363 ~IG~v~ 368 (777)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.6e-12 Score=141.03 Aligned_cols=189 Identities=23% Similarity=0.360 Sum_probs=137.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC----
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF---- 359 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~---- 359 (777)
...++++|+.|+||.++|..|++||||+..++..+.+|+++...+||+|||.|+|++++ ..+.+.+.|||.|..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHH
Confidence 35788999999999999999999999999999999999999999999999999999997 457899999998752
Q ss_pred --------CCceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEEecCCCccccCCCcCCcccccCCCcc
Q 004037 360 --------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNK 426 (777)
Q Consensus 360 --------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~~ 426 (777)
+|||+|+..|.+..+.. ..+.||.|+.. -.|.|+|.+.+.-..+.-. .||..-+.
T Consensus 372 lrqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeekv--apyhvqyt-------- 439 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKV--APYHVQYT-------- 439 (1283)
T ss_pred HHHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCcccc--ccceeeeh--------
Confidence 38999999999887664 46889999752 3799999888776554322 13321100
Q ss_pred ccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCceeeceEEeccCcccccccccccCCC---------
Q 004037 427 EDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKN--------- 497 (777)
Q Consensus 427 ~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ee~gi~v~~pg~~v~~~w~~~~~~~--------- 497 (777)
.. -|..|... . ..-++..-+.+|.+...+|..-.|+++...+.-|.|..
T Consensus 440 -------cl---------henlfh~~-----~-~~~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthf 497 (1283)
T KOG1011|consen 440 -------CL---------HENLFHAH-----T-DDGEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHF 497 (1283)
T ss_pred -------hH---------hhhhHHhh-----h-cccceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 01111000 0 00123333456777777777777888877777777743
Q ss_pred CcccceeeecC
Q 004037 498 RRLDTLVRRVP 508 (777)
Q Consensus 498 r~~~~~~~~~~ 508 (777)
-|+-++++|..
T Consensus 498 acl~skymcpg 508 (1283)
T KOG1011|consen 498 ACLSSKYMCPG 508 (1283)
T ss_pred HHHhhcccCCC
Confidence 46777777765
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=101.43 Aligned_cols=99 Identities=44% Similarity=0.831 Sum_probs=86.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Ccee
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd~I 364 (777)
|.|+|++|++|......+..+|||.+.+.. ..++|+++.++.||.|||.|.|.+... ....|.|+||+.+... +.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 578999999998766677899999999988 899999999999999999999998852 3568999999999886 8999
Q ss_pred EEEEEeCCccc-CCCccceeeec
Q 004037 365 GDCTINISDLR-DGQRHDMWIPL 386 (777)
Q Consensus 365 G~v~I~L~~L~-~~~~~~~W~~L 386 (777)
|.+.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999988 66667788865
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-11 Score=136.27 Aligned_cols=113 Identities=27% Similarity=0.426 Sum_probs=95.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~ 346 (777)
...|+|.|.+..|.|+|.|++|++|+.++.++.+||||++++-. .+.+|.+.++++||+|||+|.|.++.... .
T Consensus 286 el~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~ 365 (421)
T KOG1028|consen 286 ELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAE 365 (421)
T ss_pred eEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhhe
Confidence 56799999999999999999999999999999999999999843 57899999999999999999998885332 3
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
-.|.|+|||+|.++ +++||.+.+.... .+.....|..+.
T Consensus 366 ~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~ 405 (421)
T KOG1028|consen 366 VSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEML 405 (421)
T ss_pred eEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHH
Confidence 47999999999998 8899999888775 333345565543
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-11 Score=119.66 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=87.1
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.++|+|.+...++.+ .++|++.+|. .+..++.++||+++++++||+|||+|.|.++.+
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~---~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLL---QDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEE---eCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 889999999887766543 4777777772 234566788999999999999999999999888
Q ss_pred CCcCcccceeeeecCC--ceee-ceEEec---cCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIWVHQ---PGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~v~~---pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.......+.+.|.++ ..+. |-.+-+ .|.+ .+||..|..+||+++++||..
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~-~~hW~~ml~~~~~~v~~WH~l 135 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMG-LSHWNQMLASLRKPVAMWHPL 135 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChh-HHHHHHHHHCCCCeeeEeeec
Confidence 8888888899998874 3333 433222 3433 499999999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-10 Score=100.78 Aligned_cols=94 Identities=39% Similarity=0.614 Sum_probs=81.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~---k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
|.|+|++|++|......+..+|||++++... .++|+++.++.||.|||+|.|.+.... .+.|.|+|||.+... +.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 6799999999988776678899999999874 899999999999999999999988632 678999999998876 89
Q ss_pred eeEEEEEeCCcccCCCccc
Q 004037 363 TLGDCTINISDLRDGQRHD 381 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~ 381 (777)
++|.+.++|.++..+....
T Consensus 81 ~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eeEEEEEEHHHcccCcccc
Confidence 9999999999887765443
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=109.56 Aligned_cols=93 Identities=30% Similarity=0.464 Sum_probs=78.3
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CcccceeeEecccC--------------
Q 004037 287 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTW-------------- 343 (777)
Q Consensus 287 L~VtVieAk~L~~~D--~~G--~sDPYV~v~Lg~---~k~kTkVi~~Tln--P~WnEtF~f~V~~~-------------- 343 (777)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+.+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 356 499999999965 6799999999999 99999999876641
Q ss_pred -------C-CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCc
Q 004037 344 -------D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 344 -------e-~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~ 379 (777)
. ....|.++|||.|.++ |++||+++++|..+..+..
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~ 126 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK 126 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence 1 2458999999999997 9999999999998887653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.1e-10 Score=135.09 Aligned_cols=108 Identities=35% Similarity=0.541 Sum_probs=96.5
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~ 359 (777)
-.+.|.|+|.+..|.||+..|.+|.+||||++.+... .++|+++++|+||+|||+|.+++.+. ....|.+.|+|+|..
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG 1114 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC
Confidence 3468999999999999999999999999999999874 89999999999999999999999853 457899999999987
Q ss_pred C-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
. ++.||.+.++|..+..+.....-++|.+.
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCc
Confidence 6 99999999999999988776666777654
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=129.44 Aligned_cols=120 Identities=18% Similarity=0.352 Sum_probs=103.4
Q ss_pred eeEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCcccceeeEecccC
Q 004037 284 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW 343 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D------------------~~G~sDPYV~v~Lg~-~k~kTkVi~~T-lnP~WnEtF~f~V~~~ 343 (777)
.|.|.|+|.+|++|+.++ ..+.+||||++.++. ...||+++.+. .||.|||+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 699999999999998632 125789999999987 78899999884 6999999999999863
Q ss_pred CCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCccceeeeccCCC------CcEEEEEEEEEecCC
Q 004037 344 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK------IGRLHLAITVLEESA 405 (777)
Q Consensus 344 e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~------~GeI~LsL~y~p~s~ 405 (777)
...+.|.|.|.|.++..+||.+.+|..++..+...+.|+++.+.. .-+|+++++|.+...
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 467999999999999999999999999999998899999996532 349999999988544
|
|
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-10 Score=111.62 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred CcEEEEEEEEEecCCCccc---------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 391 IGRLHLAITVLEESAKQGV---------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv---------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
.|+|+|+|+|.+...++.+ .++|++..+. .+..+.+++||++++++.||+|||.|.|..+.+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~---~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~ 77 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLM---IHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR 77 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEE---ECCEEeeeeecccEeCCCCCcccceEEEECCHH
Confidence 3788888888876665543 3556665552 123345678999999999999999999999888
Q ss_pred CCcCcccceeeeecCCc--eee-ceEEecc-----CcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEGQ--QET-GIWVHQP-----GSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G~--ee~-gi~v~~p-----g~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.+.....+++.+.++. ++. |-..-++ |.+. +||.+|..+||.++++||..
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~-~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 78 QLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKEL-EHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred HhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHH-HHHHHHHhCCCCceeEEEeC
Confidence 88777777888887743 333 4443332 4444 99999999999999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.1e-09 Score=120.59 Aligned_cols=112 Identities=21% Similarity=0.290 Sum_probs=87.3
Q ss_pred eEEEEEEEEecCCCCC-----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEe
Q 004037 285 AYARVEVVEASDMKPS-----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 285 G~L~VtVieAk~L~~~-----D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~ 354 (777)
..|.|+|+.|++++.. +.....||||+|.+.+ .+.+|++..|+.||.|||+|.|.+..++ -..|+|+||
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEEE
Confidence 5799999999987521 2234679999999954 4678888889999999999999998654 347999999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEE
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y 400 (777)
|+|... ++++|++.+|+..|..|. .+++|.+.. .-.|.+++.+
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999876 999999999999999887 456775432 3455555543
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-10 Score=125.58 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=90.0
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcccceeeEecccCC---C
Q 004037 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD---S 345 (777)
Q Consensus 276 fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~~TlnP~WnEtF~f~V~~~e---~ 345 (777)
....|......|.|.|+.|+++.+.|.||.+||||.|.++| ...+|+|+.+|+||+|+|+|+|.|+... .
T Consensus 938 vr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te 1017 (1103)
T KOG1328|consen 938 VRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTE 1017 (1103)
T ss_pred EEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccc
Confidence 34578888999999999999999999999999999999998 3579999999999999999999998532 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~ 376 (777)
.-.|+|+|+|+|-.+ +||-|++.+.|+++..
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 347999999999997 9999999999998865
|
|
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.8e-10 Score=106.82 Aligned_cols=114 Identities=17% Similarity=0.150 Sum_probs=82.9
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.++|.|.+..+++.+ .++|++.++.+ ....++.++||++++++.||+|||+|.|..+.+
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp--~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLN--SDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEe--CCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 566677776665555433 46777776621 122345678999999999999999999999888
Q ss_pred CCcCcccceeeeecCC--ceee-ceE-E--eccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~-v--~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.......+.+.|.++ .++. |-. + ...|.+..+||..+..+||+++++||..
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l 137 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL 137 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence 8888888899998873 3333 432 2 2234445589999999999999999963
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=117.03 Aligned_cols=101 Identities=29% Similarity=0.391 Sum_probs=83.1
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~------D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.|++|+.. +.....||||++.+-+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence 46899999999987532 1123459999999843 5779999999999999999999988643 3479999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|||+|..+ ++++|++.+||..|..|. .|++|.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999876 999999999999999987 4888875
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-09 Score=124.66 Aligned_cols=124 Identities=26% Similarity=0.486 Sum_probs=101.2
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------e------------------EEEeeeecCCCCC
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------Y------------------RFRTKTQRKTLSP 330 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------------~------------------k~kTkVi~~TlnP 330 (777)
+|.-.|.|.+.+|+||.++|.+|.+||||...+.+ + ..-|.|.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 34556778899999999999999999999987633 0 1247889999999
Q ss_pred cccceeeEecccCCCCcEEEEEEeecCC---------------------------------C----CCceeEEEEEeCCc
Q 004037 331 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------F----VDDTLGDCTINISD 373 (777)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~V~D~D~---------------------------------~----~Dd~IG~v~I~L~~ 373 (777)
+|+|.|.|.|.+. ..+.+++.+||+|. . .|||+|.+.|||.+
T Consensus 191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999875 45789999999871 0 17999999999999
Q ss_pred ccCCCccceeeeccCC-----CCcEEEEEEEEEecCCCc
Q 004037 374 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQ 407 (777)
Q Consensus 374 L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~s~~l 407 (777)
+.... .++||.|+.. -+|.++|.+++......-
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeeecccc
Confidence 98764 7899999863 389999999987765443
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-09 Score=101.78 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=79.6
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|+++|+|.+..+.+.+ .+||++.++ ..+....+++||.+++++.||+|||+|.|..+.+
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l---~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~ 77 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQL---VHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQE 77 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEE---EcCCcccceEcCccccCCCCCccceeEEEeCCHH
Confidence 678888888766554432 355665554 1233455678999999999999999999998777
Q ss_pred CCcCcccceeeeecCC--ceee-ceE-Ee--ccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~-v~--~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+.+.....+++.|.+. ..+. |-. +. ..|.....||..++.++++|+++||..
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 78 ELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 7766556677777763 3333 432 21 233333599999999999999999963
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.5e-08 Score=113.24 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=86.9
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~------D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.+++++.. +.....||||+|.+-+ .+.+|++..++.||.|||+|.|.+.-++ -..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence 46899999999987421 2223579999999832 4678999999999999999999988544 3579999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEE
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y 400 (777)
|+|+|... |+++|++.+|+..|..|.+ .++|.+.. .-.|.+++.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccc---eEeccCCCcCCCCCCeeEEEEEe
Confidence 99999865 9999999999999999875 45665432 2345555543
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.6e-09 Score=99.92 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=79.3
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|++++.|.+..+.+.+ .+||++..+. .+.....+++|.++++++||+|||.|.|..+.
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 77 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM---QNGKRLKKKKTTIKKRTLNPYYNESFSFEVPF 77 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEE---ECCcccceeeccceeCCCCCcccceEEEECCH
Confidence 3788888888776655432 3455554441 12233456789999999999999999888876
Q ss_pred CCCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeee
Q 004037 455 EKSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
++.+.....++..|.+ |.++. |-. +...|.+. .||.++...|+.|+++||.
T Consensus 78 ~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~-~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 78 EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAEL-RHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred HHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChHH-HHHHHHHhCCCCeeeEEEE
Confidence 6665555667888876 34443 443 44556655 9999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-09 Score=99.28 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=77.7
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|.+++.|.+....+.+ .++|++..+. ....+.+++||.++++++||+|||.|.|..+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~ 77 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLM---CEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEE---eCCcccceecCCcccCCCCCcccceEEEECCHH
Confidence 667777777666554432 3556555541 133345678999999999999999998887766
Q ss_pred CCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeee
Q 004037 456 KSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 456 ~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
........+++.|.+ |.++. |-. ...+|.+ ..||.++..+++++++|||.
T Consensus 78 ~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~-~~~w~~~~~~~~~~~~~wh~ 133 (134)
T cd08403 78 NVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQG-REHWNEMLANPRKPIAQWHQ 133 (134)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEECCCCCCch-HHHHHHHHHCCCCeeeEeec
Confidence 665555568888876 44554 544 2344444 38999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-08 Score=89.31 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=72.5
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCc
Q 004037 287 ARVEVVEASDMKPSD---LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 287 L~VtVieAk~L~~~D---~~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd 362 (777)
|.|+|..|+++.-.+ ..+.+||||.+.++. +++||++ +.||.|||+|.|.+. ....+.|.|||+..-..-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 679999999998777 578899999999988 5899987 489999999999995 467899999998765567
Q ss_pred eeEEEEEeCCcccCC
Q 004037 363 TLGDCTINISDLRDG 377 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~ 377 (777)
.||..-+.|++|...
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 889999998887643
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.7e-07 Score=108.98 Aligned_cols=101 Identities=25% Similarity=0.332 Sum_probs=81.1
Q ss_pred eeEEEEEEEEecCCC--CC----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEE
Q 004037 284 VAYARVEVVEASDMK--PS----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~--~~----D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~ 352 (777)
...|.|+|+.+++++ .. +.....||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 357999999998753 11 1234579999999843 5789999999999999999999887543 3579999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|||+|... ++++|++.+|+..|..|.+ .++|.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 99999866 9999999999999999874 456654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=112.13 Aligned_cols=112 Identities=27% Similarity=0.495 Sum_probs=88.2
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCcccceeeEecccCCCCcEEEEEEee
Q 004037 286 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D----~~G~sDPYV~v~Lg~-----~k~kTk-Vi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D 355 (777)
+|+|.|+.+++++..- .+..+||||.+++-+ ...+|+ |..|+.||.|+|+|+|.+.-++. ..|+|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 6999999999775432 235689999999844 578999 56779999999999999986543 479999999
Q ss_pred cCCCC-CceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEE
Q 004037 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 356 ~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
+|..+ |||+|+..+|+..|..|.++ ++|.+. ..-.|.+++.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 99988 99999999999999998755 566543 134555555544
|
|
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-08 Score=96.58 Aligned_cols=113 Identities=18% Similarity=0.224 Sum_probs=80.3
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|.++++|.+....+.+ .+||++..+. .+..++.++||+++++++||+|||.|.|..+.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~---~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~ 77 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLY---YGKKRISKKKTHVKKCTLNPVFNESFVFDIPS 77 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEE---cCCceeeeEcCccccCCCCCccCceEEEECCH
Confidence 4788888888765554432 3556655541 12334567899999999999999999998877
Q ss_pred CCCcCcccceeeeecCCc--eee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 455 EKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G~--ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
........++++.|.+.. .+. |-. +...+.+ .+||.++...|++++++||..
T Consensus 78 ~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~-~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 78 EELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSG-GHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred HHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCch-HHHHHHHHhCCCCeeeEEEec
Confidence 777666677888887743 333 433 3334443 499999999999999999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-08 Score=94.04 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=62.4
Q ss_pred cEEEEEEEEEecCCCccc-------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCc
Q 004037 392 GRLHLAITVLEESAKQGV-------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 458 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv-------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~ 458 (777)
|+|+++|+|.+..+.+++ .+||++..|. .+.+ ..++||+++++|+||+|||+|.|.++.++++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~---~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVS---VSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEc---CCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 567888888777765443 5888888872 2222 3567999999999999999999999999999
Q ss_pred CcccceeeeecCCcee
Q 004037 459 KVADNFEPINIEGQQE 474 (777)
Q Consensus 459 kv~~~~e~id~~G~ee 474 (777)
.....+.+.|.|.-..
T Consensus 77 ~~tL~~~V~d~Drfs~ 92 (118)
T cd08677 77 DGTLTLTLRCCDRFSR 92 (118)
T ss_pred CcEEEEEEEeCCCCCC
Confidence 9999999999885433
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-07 Score=108.94 Aligned_cols=115 Identities=21% Similarity=0.309 Sum_probs=89.7
Q ss_pred eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-cceeeEecccCCCCcEEEEE
Q 004037 285 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~---~D---~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~W-nEtF~f~V~~~e~~~~L~V~ 352 (777)
..|+|+|++|++|+. .+ .....||||++.+.+ .+++|+++.++.||.| ||+|.|.+..++ -..|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEEE
Confidence 479999999998731 11 123479999999843 5689999999999999 999999987644 3479999
Q ss_pred EeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEEec
Q 004037 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 403 (777)
Q Consensus 353 V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~p~ 403 (777)
|+|+|... ++++|++.+|+..|..|.+ .++|.+. ....|.+++.+.+.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR---~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVR---AVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCee---EEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 99999775 9999999999999998774 4566543 24567777776653
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-07 Score=106.57 Aligned_cols=116 Identities=23% Similarity=0.438 Sum_probs=97.7
Q ss_pred eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCccc-ceeeEecccCC-CCcEEEEEEeecCCCC-
Q 004037 285 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~Wn-EtF~f~V~~~e-~~~~L~V~V~D~D~~~- 360 (777)
|.|.|.|..|++|+.+|. ....|.||.+.+++..+||.|..+++||.|| +.|.|++.+.+ +...|.|.+.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999985 4567999999999999999999999999999 56899998654 3457999999999998
Q ss_pred CceeEEEEEeCCcccCC----------CccceeeeccCC---CCcEEEEEEEE
Q 004037 361 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAITV 400 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~----------~~~~~W~~L~~~---~~GeI~LsL~y 400 (777)
+|-||.+.|+++.+... .....|+++.+. -+|+|.+-+.+
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 99999999999987542 235679998763 38898876653
|
|
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.1e-08 Score=94.83 Aligned_cols=113 Identities=16% Similarity=0.176 Sum_probs=78.7
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.++++|.+....+.+ .++|++..+. .+..+..++||.+.+++.||.|||.|.|..+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~ 77 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLM---YKDKRVEKKKTVIKKRTLNPVFNESFIFNIPL 77 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEE---eCCCccccccCcceeCCCCCcccceEEEeCCH
Confidence 4778888887766554432 3555555441 12334556899999999999999999888766
Q ss_pred CCCcCcccceeeeecC--Cceee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 455 EKSPKVADNFEPINIE--GQQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~--G~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
+........+++.|.+ |.++. |-. +...|.+. +||.++...|..|+++||..
T Consensus 78 ~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~-~~w~~~~~~~~~~~~~wh~l 135 (136)
T cd08405 78 ERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLEL-KHWKDMLSKPRQPVAQWHRL 135 (136)
T ss_pred HHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCchH-HHHHHHHhCCCCchhEEEec
Confidence 6555555567787776 34444 544 33445554 99999999999999999963
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=107.21 Aligned_cols=113 Identities=22% Similarity=0.303 Sum_probs=87.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eE-EEeeeecCCCCCccc-ceeeEecccCCCCcEEEEEEeecC
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YR-FRTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k-~kTkVi~~TlnP~Wn-EtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
-.|.|.|+.|+.|+... .|-..|||.|.+.+ .+ ++|.|..|.+||+|| |+|+|.|.+++ -..|+|.|||.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-FAFLRFVVYEED 1142 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc-eEEEEEEEeccc
Confidence 46889999999998543 35567999999843 34 455667889999999 99999999754 458999999999
Q ss_pred CCC-CceeEEEEEeCCcccCCCccceeeeccCCCC-----cEEEEEEEEEe
Q 004037 358 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----GRLHLAITVLE 402 (777)
Q Consensus 358 ~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~-----GeI~LsL~y~p 402 (777)
.++ ..|||++.+|+..+..+- ..++|++.-. ..|++.+...+
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred ccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEecc
Confidence 998 579999999999998765 4577877543 34455555444
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.6e-07 Score=109.51 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=94.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC--C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~ 345 (777)
+...++.|. .|+|.|-|.-|++|+-..-+..+||||+.+|.+ .+.||+++++|.||.|||.......+.+ .
T Consensus 1514 qV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1514 QVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred eEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 345666665 899999999999996554467799999999977 4789999999999999999876632211 3
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.+.|.+.||..+.+. +.++|.+.|+|.++...+....||.|..
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 468999999999887 8999999999999988777779999864
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-07 Score=87.77 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=65.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--Cceee-ceE-E--eccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GIW-V--HQPG 483 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~-gi~-v--~~pg 483 (777)
.++|++..+.. ...+..++||.++++++||+|||.|.|..+..+.......+++.|.+ +.++. |-. + ...|
T Consensus 34 ~DpyV~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 34 SDPFVKLYLKP---DAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKG 110 (133)
T ss_pred CCcEEEEEEEc---CCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCC
Confidence 46777666521 12234568999999999999999999987766555555667777766 33344 544 2 2223
Q ss_pred cccccccccccCCCCcccceeee
Q 004037 484 SEVAQTWEPRKGKNRRLDTLVRR 506 (777)
Q Consensus 484 ~~v~~~w~~~~~~~r~~~~~~~~ 506 (777)
. -..||-++..+|++++++||.
T Consensus 111 ~-~~~~W~~~l~~~~~~~~~wh~ 132 (133)
T cd08384 111 E-RLRHWLDCLKNPDKKIEAWHT 132 (133)
T ss_pred c-hHHHHHHHHhCCCCChheeec
Confidence 3 348999999999999999995
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-06 Score=101.16 Aligned_cols=115 Identities=14% Similarity=0.169 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 283 PVAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~----D~-~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
-.|.|.++|.+|+-+... +. ....||||++.++. ...|| .+.-||.|||+|.+++... ....+.|.|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec-
Confidence 369999999999843221 11 11239999999987 67788 5666999999999999863 22469999988
Q ss_pred CCCCCceeEEEEEeCCcccCCCc-cceeeeccCCC----C-cEEEEEEEEEecCC
Q 004037 357 DHFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----I-GRLHLAITVLEESA 405 (777)
Q Consensus 357 D~~~Dd~IG~v~I~L~~L~~~~~-~~~W~~L~~~~----~-GeI~LsL~y~p~s~ 405 (777)
+..+||.+.+|..++..+.. .+.|+++.+.. . .+|+++++|.+...
T Consensus 83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 47899999999999988865 89999997532 3 49999999988654
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-06 Score=79.03 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=59.5
Q ss_pred HHHHHHhCc-ccchHHHHHHhhccchHHHHhh-cCCccccceeeeeeecCCCCCeEeeEEEEecCCCCCeEEEEEEEEEe
Q 004037 79 NHAIEKMWP-ICMEQIASQKLLLPIIPWFLEK-YKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156 (777)
Q Consensus 79 N~iL~~~Wp-~~~e~~~S~~I~~~~l~~~l~~-~kP~~i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vvLDldis~~ 156 (777)
|.++.|++- ++..+.+.+.+.+ .+...|++ .+|++++.+.+++|+||+.||.|+++++.. ...++++.+|+++.|.
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~-~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~-~~~~g~~~~~~dv~Y~ 78 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKE-KLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPD-LDPDGELWIEFDVSYS 78 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHH-HHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccc-cCCCCCEEEEEEEEEc
Confidence 667777544 4333344444443 33444554 469999999999999999999999999953 3456679999999997
Q ss_pred eCCCccceee
Q 004037 157 TADDMSAILA 166 (777)
Q Consensus 157 ~~~D~~i~l~ 166 (777)
| ++.+.+.
T Consensus 79 G--~~~l~l~ 86 (91)
T PF10296_consen 79 G--GFSLTLE 86 (91)
T ss_pred C--CeEEEEE
Confidence 6 4554443
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.25 E-value=5e-07 Score=85.41 Aligned_cols=112 Identities=18% Similarity=0.248 Sum_probs=73.9
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
|+|+|.++|.+..+.+.+ .++|++..+. .......+++|.+.+++.||.|||.|.|..+..
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~---~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~ 77 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL---QGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEE---cCCeEeeeecCcceecCCCCeeeeeEEEECCHH
Confidence 567777777665544432 3445544441 111234567899999999999999999887665
Q ss_pred CCcCcccceeeeecCC--ceee-ceE---EeccCcccccccccccCCCCcccceeeec
Q 004037 456 KSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G--~ee~-gi~---v~~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
........++..|.+. .++. |-. ++..|.+ ..+|-++..+|+.++++||+.
T Consensus 78 ~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~-~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEE-LEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred HhCCcEEEEEEEecCCCCCCceeEEEEECCCCCCcH-HHHHHHHHhCCCCceEEeeeC
Confidence 5444445677777763 3333 544 2233343 399999999999999999974
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.4e-06 Score=100.74 Aligned_cols=117 Identities=23% Similarity=0.364 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccC-------------C-CCc
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTW-------------D-SPN 347 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~-------------e-~~~ 347 (777)
-+.++++.++.+.+.+ ++.+||||++.... +..+|++.++|.+|.|||.|+|.+... + ...
T Consensus 132 ~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l 210 (800)
T KOG2059|consen 132 GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDML 210 (800)
T ss_pred cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCcee
Confidence 3445556666666554 56699999999865 346999999999999999999988743 0 123
Q ss_pred EEEEEEee-cCCCC-CceeEEEEEeCCcccCCCccceeeeccCC----------CCcEEEEEEEEEec
Q 004037 348 VLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI----------KIGRLHLAITVLEE 403 (777)
Q Consensus 348 ~L~V~V~D-~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~----------~~GeI~LsL~y~p~ 403 (777)
.|++++|+ .+... ++|+|++.+++..+........||.|+.. ..|.+++.++|...
T Consensus 211 ~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 211 EIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred eEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 68899998 45544 99999999999988866677899999752 36889999998654
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-06 Score=92.58 Aligned_cols=108 Identities=30% Similarity=0.496 Sum_probs=88.7
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
..+++|.....-|.|++++|..|..+|.+|.+||||..++.+ -+.+|++.++|++|.||++|.|.+.+.+ ....
T Consensus 223 ~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~k 302 (362)
T KOG1013|consen 223 LISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKK 302 (362)
T ss_pred eeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcce
Confidence 467888889999999999999999999999999999999976 4678999999999999999999988644 3457
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceee
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI 384 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~ 384 (777)
+.|.|||++..+ .+++|-+...+- ..+..+..|+
T Consensus 303 v~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 303 VALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred EEEeecccCCCcCccCCCccccccc--ccchhhcCcc
Confidence 999999999875 888887655433 3344444554
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-06 Score=100.87 Aligned_cols=88 Identities=39% Similarity=0.507 Sum_probs=78.0
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k--~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
...++|.+++|.+|.+.|.+|.+|||+.+.+|.+. -++..+.+|+||+|++.|++...- .....|.+.|||+|.++
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~~~ 690 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLEAQ 690 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeecccc
Confidence 34668999999999999999999999999999865 577889999999999999887763 24578999999999997
Q ss_pred CceeEEEEEeCC
Q 004037 361 DDTLGDCTINIS 372 (777)
Q Consensus 361 Dd~IG~v~I~L~ 372 (777)
|+.||+..++|+
T Consensus 691 d~~iget~iDLE 702 (1105)
T KOG1326|consen 691 DEKIGETTIDLE 702 (1105)
T ss_pred cchhhceehhhh
Confidence 999999999987
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.7e-05 Score=87.10 Aligned_cols=104 Identities=27% Similarity=0.455 Sum_probs=87.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCcccceeeEecccCCC--CcEEEEEEe
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWDS--PNVLVIEVR 354 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-g~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e~--~~~L~V~V~ 354 (777)
...++|.|+.|.+|+-.. .|..-|||.+.+ || +++.|+...++-.|.|||+|.|.+.+... .-.|.|+|.
T Consensus 1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 356888999999997543 577889999997 44 57889999999999999999999886433 337899999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|+.-.+ |..+|-+.++|.++........|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 988777 8899999999999998888899999964
|
|
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.2e-05 Score=74.53 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=54.6
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.|+|+|++.|.+..+.+.+ .++|++..+. .+..+..++||+++++++||+|||+|.|..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~ 77 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLL---PDKSRQSKRKTSIKRNTTNPVYNETLKYSIS 77 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEE---cCCccccceEeeeeeCCCCCcccceEEEECC
Confidence 4788888888776655443 3455555441 1223456789999999999999999999887
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 78 ~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 78 HSQLETRTLQLSVWHYDR 95 (125)
T ss_pred HHHhCCCEEEEEEEECCC
Confidence 766655556677777763
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=97.66 E-value=3.8e-05 Score=73.37 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=56.5
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.|+|.|+|.|.+....+.+ .++|++.++.+ +.....++||++++++.||+|||+|.|..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp---~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~ 77 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLP---DKSHNSKRKTAVKKGTVNPVFNETLKYVVE 77 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEe---CCcccceeecccccCCCCCccceEEEEEcC
Confidence 3777888887776555433 35566666521 222345789999999999999999999987
Q ss_pred CCCCcCcccceeeeecCCc
Q 004037 454 SEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~ 472 (777)
.++.......+.+.|.++.
T Consensus 78 ~~~l~~~~L~v~V~~~~~~ 96 (128)
T cd08392 78 ADLLSSRQLQVSVWHSRTL 96 (128)
T ss_pred HHHhCCcEEEEEEEeCCCC
Confidence 7777766777888887743
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=97.65 E-value=4.1e-05 Score=76.13 Aligned_cols=91 Identities=10% Similarity=0.042 Sum_probs=57.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCC--ceee-ceE-Ee----
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW-VH---- 480 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G--~ee~-gi~-v~---- 480 (777)
.++|++..+. .+..+..++||.+.+++.||+|||.|.|.. +.++.......+++.|.+. .++. |-. +.
T Consensus 48 ~DPYVkv~l~---~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 48 SDSFVKCYLL---PDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCEEEEEEE---cCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 4667766552 122344568999999999999999988864 3344444445577777653 2333 432 22
Q ss_pred -----------ccCcccccccccccCCCCccccee
Q 004037 481 -----------QPGSEVAQTWEPRKGKNRRLDTLV 504 (777)
Q Consensus 481 -----------~pg~~v~~~w~~~~~~~r~~~~~~ 504 (777)
.-|.+. .||..+..+|++++.-.
T Consensus 125 ~~~~~~~~w~~~~~~~~-~~w~~~~~~p~~~~~~~ 158 (162)
T cd04020 125 KSYGQAVDWMDSTGEEI-LLWQKMLDNPNSWVEGT 158 (162)
T ss_pred ccCCCccccccCChHHH-HHHHHHHhCCCCeEEEE
Confidence 123443 88888888888776543
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.6e-05 Score=72.91 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=54.3
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
+|+|+++|.|.+....+.+ .++|++..+.+ +..+..++||.++++++||+|||+|.|..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p---~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~ 77 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLP---DKSNRGKRKTSVKKKTLNPVFNETLRYKVE 77 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEc---CCCccccccCccCcCCCCCccCceEEEECC
Confidence 5888888888776544332 35566655521 222345689999999999999999999877
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 78 ~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 78 REELPTRVLNLSVWHRDS 95 (125)
T ss_pred HHHhCCCEEEEEEEeCCC
Confidence 666655556677777763
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=97.61 E-value=4.1e-05 Score=72.89 Aligned_cols=77 Identities=6% Similarity=-0.057 Sum_probs=56.4
Q ss_pred EEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCcccc-ccccceeccCCCCcccccccccccCCC
Q 004037 393 RLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKED-QSNKEDIRESFANETTDKGSFSSVSSE 455 (777)
Q Consensus 393 eI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~v-kkkKT~vkk~t~nP~~Ne~~~~~~~s~ 455 (777)
+|+++|.|.+..+.+.+ .++|++.+|.+ +..++ .++||++++++.||+|||+|.|..+.+
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp---~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~ 78 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLP---CSSSTSCLFRTKALEDQDKPVFNEVFRVPISST 78 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEcc---CCCCCCceEEcCccCCCCCCccccEEEEECCHH
Confidence 45666666555444332 47788877732 23232 478999999999999999999999999
Q ss_pred CCcCcccceeeeecCCc
Q 004037 456 KSPKVADNFEPINIEGQ 472 (777)
Q Consensus 456 ~~~kv~~~~e~id~~G~ 472 (777)
+.......+.+.+.++.
T Consensus 79 ~L~~~~L~~~V~~~~~~ 95 (124)
T cd08680 79 KLYQKTLQVDVCSVGPD 95 (124)
T ss_pred HhhcCEEEEEEEeCCCC
Confidence 99888888999887643
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.50 E-value=9.8e-05 Score=87.46 Aligned_cols=90 Identities=21% Similarity=0.391 Sum_probs=75.7
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEE-EEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVK-GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~-v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
.-.|.+.+++++|+ ++ ..|||.. +++|.+.+||.+.++|+||+||+...|.+... .....+|.|||++.++
T Consensus 51 ~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 51 DFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNRLS 122 (644)
T ss_pred cccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCCCC
Confidence 44689999999987 33 3588765 66788999999999999999999999999864 3456799999999998
Q ss_pred -CceeEEEEEeCCcccCCCc
Q 004037 361 -DDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~ 379 (777)
++++|.|+++|.++...+.
T Consensus 123 ~n~lv~~~e~~~t~f~~kqi 142 (644)
T PLN02964 123 KNTLVGYCELDLFDFVTQEP 142 (644)
T ss_pred HHHhhhheeecHhhccHHHH
Confidence 9999999999988776554
|
|
| >KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=4.1e-05 Score=90.57 Aligned_cols=172 Identities=14% Similarity=0.196 Sum_probs=110.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
..|.+++.+++|.+|.. ....||+..+.. .+.+|+++.+|-.|.||++|++++. ..+.+++.+++++
T Consensus 757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~---~sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI---ESQSSRLEKTEKS 828 (1112)
T ss_pred cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh---hccccchhhhccc
Confidence 45899999999999963 457899987743 5789999999999999999998876 3567888888876
Q ss_pred CC-----------CCceeEEEEEeCCcccCCCccceeeecc-CCCCcEEEEEEEEEecCCCccccCCCcCCcccccCCCc
Q 004037 358 HF-----------VDDTLGDCTINISDLRDGQRHDMWIPLQ-NIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGN 425 (777)
Q Consensus 358 ~~-----------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~-~~~~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~ 425 (777)
.- .+..+|..++.|.-.... ...|+.-- ....-.+...+.+.+...... ..+++ + ..|+
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~--d~d~~t~v~~~n~~~ve~~v~~ssss~Ss~-~~~~~-~-----qTgI 899 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDPQPHH--DADWYTQVIDMNGIVVETSVKFSSSSTSSK-RKPSV-K-----QTGI 899 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCccccc--cccCccChhhhcCcceeeeEEecccccccc-CCCcc-e-----ecee
Confidence 42 155667777666533221 22354321 122334444444444332222 11121 1 2355
Q ss_pred cc----cccccceeccCCCCcccccccccccCCCCCcCcccceeeee-cCCceeeceE-EeccCccc
Q 004037 426 KE----DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPIN-IEGQQETGIW-VHQPGSEV 486 (777)
Q Consensus 426 ~~----vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id-~~G~ee~gi~-v~~pg~~v 486 (777)
++ +++.-.+.+....-|+. |..|+|.++ .+|.+|.||| +++.+|.+
T Consensus 900 FG~~~~~kisv~t~~n~s~lP~V---------------VyrCvEyle~~RgieEeGIyRlSGsaT~I 951 (1112)
T KOG4269|consen 900 FGLPLNVKISVVTKRNVSGLPYV---------------VYRCVEYLESCRGIEEEGIYRLSGSATDI 951 (1112)
T ss_pred ccccceeeEeeeeeecccCCchH---------------HHHHHHHHHhccccchhceEEecccHHHH
Confidence 54 33322222222333444 788999998 8999999999 99999998
|
|
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00034 Score=68.60 Aligned_cols=57 Identities=14% Similarity=-0.037 Sum_probs=41.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeee-ecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~i-d~~G~ 472 (777)
.+||++.+| ..+..++.++||+++++++||+|||+|.|..+ .......+++. |.++.
T Consensus 51 sDPYVKv~L---lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~ 108 (146)
T cd04028 51 PAPYVKVYL---LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRM 108 (146)
T ss_pred cCCeEEEEE---ECCCccccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCC
Confidence 578888887 23445567899999999999999999999886 33334456666 45433
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00014 Score=68.68 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=44.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++..+.. ...+..++||.+.++++||+|||+|.|.. +.+........+++.|.+..
T Consensus 33 ~DpyVkv~l~~---~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 33 PDPYVKTYLLP---DPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred CCCEEEEEEee---CCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 46777776622 22344678999999999999999999887 55556666667888888754
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00018 Score=78.76 Aligned_cols=120 Identities=24% Similarity=0.286 Sum_probs=93.8
Q ss_pred cccCCceeEecccccCCCCCCcceeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecC
Q 004037 253 TLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRK 326 (777)
Q Consensus 253 ~LV~Pn~~~Idl~k~~s~~~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~-----~k~kTkVi~~ 326 (777)
.+..|++-.+++.- ....|.|.|.|++|++|..+.. ...++|||+|++.. -+.+|+...+
T Consensus 251 ~la~P~mg~iq~~~--------------~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k 316 (405)
T KOG2060|consen 251 TLAAPNMGDIQIAL--------------MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK 316 (405)
T ss_pred hhcCcccccchhhh--------------hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc
Confidence 46677766666542 2357899999999999987653 33789999999965 4679999999
Q ss_pred CCCCcccceeeEecccCCCCcEEEEEEee-cCCCC-CceeEEEEEeCCcccCCC-ccceeeeccC
Q 004037 327 TLSPKWHEEFNIPISTWDSPNVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQN 388 (777)
Q Consensus 327 TlnP~WnEtF~f~V~~~e~~~~L~V~V~D-~D~~~-Dd~IG~v~I~L~~L~~~~-~~~~W~~L~~ 388 (777)
|++|.+.+...|.-.. ....|.+.||- +.+.- +.|||.+++-|.++.... ....||.|.+
T Consensus 317 T~~plyqq~l~f~~sp--~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 317 TLDPLYQQQLSFDQSP--PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred cCchhhhhhhhhccCC--CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 9999998888876554 45789999994 44444 779999999999998876 5678999875
|
|
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00037 Score=66.01 Aligned_cols=75 Identities=21% Similarity=0.131 Sum_probs=52.0
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VS 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~ 453 (777)
.|+|++++.|.+...++.+ .++|++..+. .. +-.++||+++++ +||+|||+|.|. .+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~ll----p~-~~~~~kTkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLL----PS-KKQRAKTKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEc----cC-CcceeecccccC-CCCcccCEEEECCCC
Confidence 5888888888887776554 2334443331 11 225678989888 999999999997 66
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+.+.|.+.
T Consensus 76 ~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 76 PEELNNMALRFRLYGVER 93 (124)
T ss_pred HHHhccCEEEEEEEECCC
Confidence 666666666677777763
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00036 Score=65.53 Aligned_cols=78 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.++|.|.+....+.+ .++|++..+.. +.....++||.+++++.||+|||+|.+..+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~ 78 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLP---DKSKSTRRKTSVKKDNLNPVFDETFEFPVSL 78 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEc---CCCCCceEecccccCCCCCEECeEEEEecCH
Confidence 4677777777665544332 35565555411 1223567899999999999999999998766
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.........+...|.+.
T Consensus 79 ~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 79 EELKRRTLDVAVKNSKS 95 (127)
T ss_pred HHhcCCEEEEEEEECCc
Confidence 65554455566666653
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00039 Score=65.20 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=49.4
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.+++.|.+....+.+ .+||++..+. + .+-+++||.+.+++.||+|||.|.+..+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~----~-~~~~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLL----P-DKKKKFETKVHRKTLNPVFNETFTFKVPY 76 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEE----c-CCCCceecccCcCCCCCceeeeEEEeCCH
Confidence 5777777777665554432 3455554441 1 11235789999999999999999988765
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......+++.|.+.
T Consensus 77 ~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 77 SELGNKTLVFSVYDFDR 93 (124)
T ss_pred HHhCCCEEEEEEEeCCC
Confidence 54444445577777653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00052 Score=65.53 Aligned_cols=100 Identities=23% Similarity=0.366 Sum_probs=74.2
Q ss_pred EEEEEEEecCCCCCC---------C----CCCCCcEEEEEeC--C--eEEEeeeecCCCCCcccceeeEecccC------
Q 004037 287 ARVEVVEASDMKPSD---------L----NGLADPYVKGQLG--P--YRFRTKTQRKTLSPKWHEEFNIPISTW------ 343 (777)
Q Consensus 287 L~VtVieAk~L~~~D---------~----~G~sDPYV~v~Lg--~--~k~kTkVi~~TlnP~WnEtF~f~V~~~------ 343 (777)
|.|.|++|.||++.. + .-.-++||++.+. + +..+|+++.++..|.|+.+++|.++-.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467889999997532 1 1124899999963 2 688999999999999999999987610
Q ss_pred --------CCCcEEEEEEeecCCC-----------CCceeEEEEEeCCcccCCC-ccceeeec
Q 004037 344 --------DSPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDGQ-RHDMWIPL 386 (777)
Q Consensus 344 --------e~~~~L~V~V~D~D~~-----------~Dd~IG~v~I~L~~L~~~~-~~~~W~~L 386 (777)
-....+.|+||+.+.. +|-.||.+.||+.+|.... ....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0234689999986542 2558899999999986543 46789875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00046 Score=64.81 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=50.9
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|++++.|.+..+.+.+ .+||++..+. ..+..++||++++++.||+|||.|.|..+.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~-----~~~~~~~kT~v~~~t~~P~wne~f~f~v~~ 76 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLL-----PDRSNTKQSKIHKKTLNPEFDESFVFEVPP 76 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEe-----cCCCCcEeCceEcCCCCCCcccEEEEeCCH
Confidence 5777777777665544332 3556555441 111235789999999999999999998776
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......+++.|.+.
T Consensus 77 ~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 77 QELPKRTLEVLLYDFDQ 93 (124)
T ss_pred HHhCCCEEEEEEEECCC
Confidence 66555555677777764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00014 Score=87.34 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=92.3
Q ss_pred ceeeeecC-ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEe---cccC-----CC
Q 004037 275 WFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP---ISTW-----DS 345 (777)
Q Consensus 275 ~fsL~y~~-~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~---V~~~-----e~ 345 (777)
.|+..+.. ....+++.|.+|+.|.+.|..+.+|||+.+....+...|.++.+|+||.|+++..|. +... ..
T Consensus 195 ~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ 274 (1105)
T KOG1326|consen 195 EFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKN 274 (1105)
T ss_pred ceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcC
Confidence 45555544 345688999999999999999999999999999999999999999999999998774 2210 13
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC--CCcEEEEEE
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAI 398 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL 398 (777)
...+.|+|||.|+.+ ++++|++.....-+.. .....|+++-.. -.|++.++.
T Consensus 275 ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 275 PPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIAA 329 (1105)
T ss_pred CCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHHH
Confidence 457899999999987 9999998665443222 445678887543 245544443
|
|
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00041 Score=66.12 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=48.8
Q ss_pred CcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccc-cc
Q 004037 391 IGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFS-SV 452 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~-~~ 452 (777)
.|+|.+++.|......+.+ .++|++..+- ..+-+++||.++++++||+|||+|.| ..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~-----~~~~~~~kT~v~~~t~nP~wnE~F~f~~~ 76 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLL-----PEKEHKVKTRVLRKTRNPVYDETFTFYGI 76 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEe-----CCcCceeeccEEcCCCCCceeeEEEEccc
Confidence 6788888887766554432 2455554441 11224568999999999999999888 34
Q ss_pred CCCCCcCcccceeeeecC
Q 004037 453 SSEKSPKVADNFEPINIE 470 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~ 470 (777)
+..+.......+++.|.+
T Consensus 77 ~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 77 PYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CHHHhCCCEEEEEEEEcC
Confidence 545544445567777765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0005 Score=64.80 Aligned_cols=59 Identities=12% Similarity=-0.108 Sum_probs=42.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++.+|.+ +..+..++||++.++++||+|||+|.|..+.+..... ..+.+.|.++.
T Consensus 32 ~dpYVkv~l~p---~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~-l~v~V~~~~~~ 90 (119)
T cd08685 32 CNSYVKISLSP---DKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKR-LLVTVWNKLSK 90 (119)
T ss_pred CCeeEEEEEEe---CCCCcceEeCccccCCCCCccccEEEEEcChHHhCCE-EEEEEECCCCC
Confidence 57888877732 2233456799999999999999999998866555443 34777776643
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=58.75 Aligned_cols=96 Identities=21% Similarity=0.429 Sum_probs=69.1
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEE--eC-CeEEEeeeecCCCCCcccceeeEecccCCC-CcEEEEEEeecCCCCCc
Q 004037 288 RVEVVEASDMKPSDLNG-LADPYVKGQ--LG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFVDD 362 (777)
Q Consensus 288 ~VtVieAk~L~~~D~~G-~sDPYV~v~--Lg-~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~~L~V~V~D~D~~~Dd 362 (777)
-|+++.|++|.-....| .+--|++-- +. +..+||.+.+...||.|+|+|.|.+.-+.. .-.|.|.||. ..-+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 37889999986443222 233466633 33 367899999999999999999999875432 3478999998 334588
Q ss_pred eeEEEEEeCCcccCCCccceeee
Q 004037 363 TLGDCTINISDLRDGQRHDMWIP 385 (777)
Q Consensus 363 ~IG~v~I~L~~L~~~~~~~~W~~ 385 (777)
.||.|.+.|+++-.++ ...|.+
T Consensus 81 ~iG~~sL~l~s~geeE-~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLSTQE-TDHWLE 102 (103)
T ss_pred eeeEEEeecccCCHHH-hhhhhc
Confidence 9999999999776543 456654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.001 Score=62.17 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=49.2
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|+++|.|.+....+.+ .+||++..+.. +.....++||++.+++.||+|||.|.|.. +
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 78 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLP---DRSEKSKRRTKTVKKTLNPEWNQTFEYSNVR 78 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEcc---CCCccccccccccCCCCCCccccEEEEcccC
Confidence 3667777776665444332 35566555421 11123567899999999999999988875 3
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.++.......+++.|.+.
T Consensus 79 ~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 79 RETLKERTLEVTVWDYDR 96 (125)
T ss_pred HHHhCCCEEEEEEEeCCC
Confidence 344444455677777764
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.00076 Score=62.90 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=32.5
Q ss_pred cccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 428 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 428 vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..++||.+++++.||+|||.|.|..+..+.......++..|.+.
T Consensus 51 ~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 51 QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 35688999999999999999988776555444445566666653
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0025 Score=70.67 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=91.9
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcccceeeEecccCC----------CCc
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SPN 347 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e----------~~~ 347 (777)
....|.+.|+++.+++......-.|-|+++..- .++.+|.++++|.+|.|+|.|.+.+.... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 445678888888887654322234678887752 27889999999999999999999887521 123
Q ss_pred EEEEEEeecCCCC--CceeEEEEEeCCcccCCCccceeeeccCC---CCcEEEEEEEEEe
Q 004037 348 VLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNI---KIGRLHLAITVLE 402 (777)
Q Consensus 348 ~L~V~V~D~D~~~--Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~---~~GeI~LsL~y~p 402 (777)
.+.|++|.+..|- |.++|.+.+.|.-|.........++|.+. -.|+|.+.+.+..
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ 504 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence 6899999998873 99999999999988876666778888763 3788888887653
|
|
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0035 Score=58.76 Aligned_cols=75 Identities=9% Similarity=0.099 Sum_probs=45.8
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|++++.|.+....+.+ .+||+...+. .....+.+|+++++++||+|||.|.+.. +
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~-----~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~ 76 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLL-----PDKKHKLETKVKRKNLNPHWNETFLFEGFP 76 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEEC-----CCCCcceeeeeecCCCCCccceeEEEcccC
Confidence 5777777777655433322 3455544431 1112357899999999999999988864 3
Q ss_pred CCCCcCcccceeeeecC
Q 004037 454 SEKSPKVADNFEPINIE 470 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~ 470 (777)
.+........+++.|.+
T Consensus 77 ~~~l~~~~l~~~v~d~d 93 (125)
T cd08386 77 YEKLQQRVLYLQVLDYD 93 (125)
T ss_pred HHHhCCCEEEEEEEeCC
Confidence 33333333456677665
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.002 Score=60.11 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=32.0
Q ss_pred cccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 430 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 430 kkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+++++++||+|||.|.|..+..........++..|.++
T Consensus 51 ~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 92 (123)
T cd08390 51 SLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDR 92 (123)
T ss_pred ceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCc
Confidence 478999999999999999988876655544445566677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=66.79 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=83.1
Q ss_pred eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC----C-CceeEEEEEeCCcccCCCccceeeecc---C
Q 004037 317 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQ---N 388 (777)
Q Consensus 317 ~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~----~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~---~ 388 (777)
...+|.++++.+||.|-+.|.+... ++..|.|++.++|.+.. . ++|+|++...|..+........-+.|+ +
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 3458999999999999999988766 34678999999998765 2 799999999999887654332223333 2
Q ss_pred CCCcEEEEEEEEEecCC----------CccccCCCcCCc----ccccCCCccccccccceeccCCCCcccccc
Q 004037 389 IKIGRLHLAITVLEESA----------KQGVDSPCDGGT----LNKEGMGNKEDQSNKEDIRESFANETTDKG 447 (777)
Q Consensus 389 ~~~GeI~LsL~y~p~s~----------~lsv~d~~~k~~----L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~ 447 (777)
...|.|.+.+.-..... .+...+.+.+.. ..+..-.....-.++|.+.++++||.|-..
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~ 192 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF 192 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc
Confidence 35677777665322111 011111111100 000111233455789999999999999663
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0047 Score=66.44 Aligned_cols=119 Identities=11% Similarity=0.014 Sum_probs=83.0
Q ss_pred ecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 280 VKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 280 y~~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
...-.|.|.+++..++||.-... +-+-+-||.+..+. .+.+|.+.....--.|.|+|+..+.+ ...|.+-||.|
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvySW 122 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYSW 122 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEeec
Confidence 34567999999999999975432 45678899999876 57788887777777999999998874 35799999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
+... +.+.-...+.+..+... .-+.-+.|.-..+|++-+++.+.+
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~rq-spd~~~Al~lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDRQ-SPDRVVALYLEPRGQPPLRLPLAD 168 (442)
T ss_pred Cchhhccccccchhhhhhhhhc-CCcceeeeecccCCCCceecccCC
Confidence 8864 66543334444444332 223334444446888888776543
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0054 Score=58.61 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=48.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
.|+|.+++.|.+....+.+ .++|++.++..... .....++||++.++++||+|||.|.+....
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHL-FPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCc-CccccccccccCcCCCCCccCCEEEEEech
Confidence 5777777777664443322 35565555421100 012457899999999999999999888754
Q ss_pred CC--CcCcccceeeeecC
Q 004037 455 EK--SPKVADNFEPINIE 470 (777)
Q Consensus 455 ~~--~~kv~~~~e~id~~ 470 (777)
.. .......+++.|.+
T Consensus 81 ~~~~~~~~~l~~~V~d~d 98 (133)
T cd04009 81 EQCSVEGALLLFTVKDYD 98 (133)
T ss_pred hhcccCCCEEEEEEEecC
Confidence 32 23334456676765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0029 Score=60.02 Aligned_cols=69 Identities=6% Similarity=-0.086 Sum_probs=45.3
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC-CCcCcccceeeeecC--Cceee-ceE
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIE--GQQET-GIW 478 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~-~~~kv~~~~e~id~~--G~ee~-gi~ 478 (777)
..+||++.++... ....+.+++||.++++++||+|||+|.|..+.+ ..+.....+.+.|.+ +.++. |-.
T Consensus 19 ~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~ 91 (120)
T cd08395 19 MFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVT 91 (120)
T ss_pred CCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEE
Confidence 3689998887311 112333457899999999999999999998765 334444556666664 33444 443
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0071 Score=59.98 Aligned_cols=78 Identities=12% Similarity=-0.024 Sum_probs=52.4
Q ss_pred CcEEEEEEEEE---ecCCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC------CCcCcc
Q 004037 391 IGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE------KSPKVA 461 (777)
Q Consensus 391 ~GeI~LsL~y~---p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~------~~~kv~ 461 (777)
.|+|.+...-- +..-.....++|++..+..+ ..+..+.||+++++|+||+|||+|.|..+.. ..+...
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p---~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYP---NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecC---CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 45555555432 22222223688998877333 3355679999999999999999999988554 244555
Q ss_pred cceeeeecCC
Q 004037 462 DNFEPINIEG 471 (777)
Q Consensus 462 ~~~e~id~~G 471 (777)
..+++.|.++
T Consensus 80 L~~~V~d~~~ 89 (155)
T cd08690 80 LKFEVYHKGG 89 (155)
T ss_pred EEEEEEeCCC
Confidence 6788888875
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.025 Score=65.46 Aligned_cols=86 Identities=27% Similarity=0.473 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCcccceeeEecc---cCCCCcEEEEEEeecCCCC
Q 004037 290 EVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIS---TWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 290 tVieAk~L~~~D~~G~sDPYV~v~Lg--~----~k~kTkVi~~TlnP~WnEtF~f~V~---~~e~~~~L~V~V~D~D~~~ 360 (777)
-.++|++|..+|..+++|||..++-- . ..++|.++++|++|.|-+ |.+... ..+....+.+.|||++..+
T Consensus 141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence 34568999999999999999987742 2 468999999999999987 443332 2234567899999999987
Q ss_pred -CceeEEEEEeCCcccC
Q 004037 361 -DDTLGDCTINISDLRD 376 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~ 376 (777)
+++||++..++.++..
T Consensus 220 ~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQE 236 (529)
T ss_pred CcCceeEecccHHHhcc
Confidence 7999999999998864
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.013 Score=54.98 Aligned_cols=77 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSS 454 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~s 454 (777)
|+|+++|.|.+....+.+ .++|++..+. .+.....+.+|.+.+++.||+|||.|.|. .+.
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~ 78 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLL---PGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEe---cCCCCCCceeeeeecCCCCCCccceEEEcCCCH
Confidence 667777777665444332 3444444431 12223456899999999999999998774 333
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......++..|.+.
T Consensus 79 ~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 79 EDIQRKTLRLLVLDEDR 95 (123)
T ss_pred HHhCCCEEEEEEEEcCC
Confidence 33333334566666653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.0096 Score=66.58 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=44.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecCCceee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET 475 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~G~ee~ 475 (777)
++||++.+|-+ ..+...|+||.+.+.++||+|||+|.|.. |++...++. +|+.|.|....+
T Consensus 201 SDPYvk~kliP---D~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls--iEvWDWDrTsRN 262 (683)
T KOG0696|consen 201 SDPYVKLKLIP---DPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS--IEVWDWDRTSRN 262 (683)
T ss_pred CCcceeEEecc---CCcchhhhhhhhhhhhcCccccceeEEecccccccceeE--EEEecccccccc
Confidence 68888887733 33445568888899999999999999988 455555554 777777765544
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.18 Score=50.11 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=86.2
Q ss_pred CceeEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCcccceeeEecccCC------------C
Q 004037 282 EPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------S 345 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~--~G~sDPYV~--v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e------------~ 345 (777)
+..-.|+++|..++-+...-. .+..+.-.. +.+++|+|+|+.+..+.+|.|+|.|.|++.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 455688999998875432111 134444444 445789999999999999999999999988532 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCcc--ceeeeccC------CCCcEEEEEEEEEecC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEES 404 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~--~~W~~L~~------~~~GeI~LsL~y~p~s 404 (777)
.+.+++.|.-.|..+ ..++|...++...+...... ..-+.|.+ ...|-|.+++.++|..
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 346888888777765 57889998888877655443 33344433 2478899999888754
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.32 Score=54.19 Aligned_cols=116 Identities=12% Similarity=0.202 Sum_probs=90.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC------CCCcEEEEEEeecCCC-
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW------DSPNVLVIEVRDKDHF- 359 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~------e~~~~L~V~V~D~D~~- 359 (777)
+.|+|++|++++... .-.-.+...++++...|-.+..+-.|.||.....++... .+...|+++||-.|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998652 345678888999999999999999999999888776521 1345799999999843
Q ss_pred C-CceeEEEEEeCCcc---cCC--CccceeeeccCC------CCcEEEEEEEEEecCC
Q 004037 360 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEESA 405 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L---~~~--~~~~~W~~L~~~------~~GeI~LsL~y~p~s~ 405 (777)
+ .+.+|.+.++|... ..+ .....|++|.+. .+-+|.+.+.......
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 3 88999999999988 444 356789999764 2568888888776553
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.075 Score=64.00 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=67.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeec-CCCCCcccce-eeEecccCCCCcEEEEEEe
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~-~TlnP~WnEt-F~f~V~~~e~~~~L~V~V~ 354 (777)
.+.+.|+|+++.-|..++ ...||.|.+-+ ..++|+++. +.+||+|+|+ |.|.---...-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 367899999999987654 34899999832 467888865 5899999975 6665221112347999999
Q ss_pred ecCCCCCceeEEEEEeCCcccCCCc
Q 004037 355 DKDHFVDDTLGDCTINISDLRDGQR 379 (777)
Q Consensus 355 D~D~~~Dd~IG~v~I~L~~L~~~~~ 379 (777)
+.+ ..+||+-.+|++.|..|..
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GYr 799 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGYR 799 (1189)
T ss_pred ccC---CceeeeeccchhcccCcce
Confidence 965 5799999999999988764
|
|
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.029 Score=55.17 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=39.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC-------------CCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS-------------SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~-------------s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+.. +..+..++||.++++++||+|||+|.|... .++.+.....+++.|.++
T Consensus 19 sDPYV~V~l~~---~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~ 90 (148)
T cd04010 19 CDPYASVTLIY---SNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASM 90 (148)
T ss_pred CCceEEEEEeC---CcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCC
Confidence 57888777632 122335678999999999999999999873 223333444566666654
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.33 Score=48.39 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCeE----EEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeec
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPYR----FRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~k----~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~ 356 (777)
..++|+|+++.++... ..+|-||.+.+ |.+. ..|+.+.. .++.|||...|++. .......|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3678999999998754 34688988866 4432 23443333 67999999888765 333445899999997
Q ss_pred CCCC-----CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 357 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~-----Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
...+ ...+|.+.++|-+... .| .+|...|.+...+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~~~ 123 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWPVP 123 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEcCC
Confidence 6421 2468999998876332 22 3788888887543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.33 Score=49.03 Aligned_cols=103 Identities=16% Similarity=0.212 Sum_probs=68.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeec
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~ 356 (777)
..++|+|+.+.+|... ....+-||.+.| |.+ ...|+.+.-+..+.|||.+.|++. .......|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3688999999999862 234667887655 553 335655554567999999888765 333445899999986
Q ss_pred CCCC-----------------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 357 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 357 D~~~-----------------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
.... +..||.+.++|-+... .| .+|...|.++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW~ 135 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMWT 135 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEecC
Confidence 5321 3577888887765332 12 36888777763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.089 Score=48.56 Aligned_cols=58 Identities=12% Similarity=0.081 Sum_probs=38.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCC-cCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~-~kv~~~~e~id~~G 471 (777)
..+||++..+.. .+ ..+.||++.++++||+|||.|.+.....+. ......+++.|.+.
T Consensus 22 ~~Dpyv~v~~~~--~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 22 SSDPYVTASFAK--FG---KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CCCccEEEEEcc--CC---CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 357888776621 11 235789999999999999998887654432 22334577777763
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.12 Score=50.23 Aligned_cols=39 Identities=13% Similarity=-0.077 Sum_probs=29.6
Q ss_pred ccccceeccCCCCccc-ccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~-Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++||.++++++||+| ||.|.+.....+ ...+++.|.++
T Consensus 45 ~~~kT~v~~~tlnP~W~nE~f~f~v~~~~----~L~v~V~D~~~ 84 (137)
T cd08691 45 QECRTSIVENTINPVWHREQFVFVGLPTD----VLEIEVKDKFA 84 (137)
T ss_pred ceeeeeeEcCCCCCceEceEEEEEcCCCC----EEEEEEEecCC
Confidence 4689999999999999 999888775332 34566777654
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=92.49 E-value=0.27 Score=46.49 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=28.7
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++||.+.+++.||.|||+|.+........ ....++..|.+.
T Consensus 50 ~~~rT~v~~~~~~P~wne~f~~~~~~~~~~-~~l~v~v~d~~~ 91 (131)
T cd04026 50 TKQKTKTIKKTLNPVWNETFTFDLKPADKD-RRLSIEVWDWDR 91 (131)
T ss_pred ceecceeecCCCCCCccceEEEeCCchhcC-CEEEEEEEECCC
Confidence 457899999999999999988876433222 223455666653
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.72 Score=45.37 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=67.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D 357 (777)
.++|++....++...+ ....+-||.+.+ |.+ ...|+......++.|||...|.+. .......|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 5677888887776411 234567777765 442 234444444468999999888755 3334458999999976
Q ss_pred CCC---CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEE
Q 004037 358 HFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (777)
Q Consensus 358 ~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (777)
..+ +..||.+.++|-+... .| .+|...|.+.
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~~--------~L---~~G~~~l~lW 121 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYKG--------KL---RQGMITLNLW 121 (156)
T ss_pred cCCCCcceEEEEEeEEeEcccC--------cE---ecCCEEEecc
Confidence 543 5799999999886432 12 2677777776
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.27 Score=47.47 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=55.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCC-------------CCcCcccceeeeecCCc--ee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-------------KSPKVADNFEPINIEGQ--QE 474 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~-------------~~~kv~~~~e~id~~G~--ee 474 (777)
.+||+...+... .+..+++|.+.+++.||.|||.|.+..... ........++..|.+.. ++
T Consensus 19 ~dPyv~v~~~~~----~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 19 CDPFARVTLNYS----SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred CCcEEEEEEecC----CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 466766555211 123457898989999999999988876443 22444556777776643 33
Q ss_pred e-ceEEeccCcccccccccccCCCCcccceeeecCCCccccCCCCCCCCC
Q 004037 475 T-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL 523 (777)
Q Consensus 475 ~-gi~v~~pg~~v~~~w~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (777)
. |.. ..+-.++. .+.+..+|+.......---+++..|||
T Consensus 95 ~IG~~-~i~l~~l~---------~~~~~~~W~~L~~~~~~~~~~~~~~~~ 134 (137)
T cd08675 95 FLGEV-RIPLQGLQ---------QAGSHQAWYFLQPREAPGTRSSNDGSL 134 (137)
T ss_pred EEEEE-EEehhhcc---------CCCcccceEecCCcCCCCCCccccCCC
Confidence 2 322 22333321 334557777666442222333444444
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.27 Score=47.47 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=35.2
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||++..+ + ..+.||.+.+++.||.|||.|.|........ ...+++.|.+
T Consensus 35 ~~DPYv~v~~-----~---~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~--~l~i~V~D~d 86 (136)
T cd08375 35 KSDPYCEVSM-----G---SQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD--VLCITVFDRD 86 (136)
T ss_pred CcCcEEEEEE-----C---CEeeeccccCCCCCCccCceEEEEecCccCC--EEEEEEEECC
Confidence 3578877655 2 2357899999999999999988866432222 2346666665
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.17 Score=48.13 Aligned_cols=41 Identities=2% Similarity=-0.170 Sum_probs=30.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
.+||++..+... .....+.||++.++|+||+|||.|.+..+
T Consensus 15 sDPYV~l~v~~~---~~~~~~~KTk~i~~TlnPvWnE~F~i~l~ 55 (118)
T cd08686 15 ANLYCTLEVDSF---GYFVKKAKTRVCRDTTEPNWNEEFEIELE 55 (118)
T ss_pred CCCEEEEEEcCc---cccceeeeeeeecCCCCCccceEEEEEeC
Confidence 578887655211 11135689999999999999999988775
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.33 Score=46.44 Aligned_cols=85 Identities=13% Similarity=0.011 Sum_probs=50.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC--C---CCCc--CcccceeeeecCCc--eee-ceEE
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS--S---EKSP--KVADNFEPINIEGQ--QET-GIWV 479 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~--s---~~~~--kv~~~~e~id~~G~--ee~-gi~v 479 (777)
.++|++..+. ..++||++.++++||+|||.|.+... . +... .....+++.|.+.. ++. |-..
T Consensus 22 ~dpyv~v~~~--------~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~ 93 (135)
T cd04017 22 SDPFARVSFL--------NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSV 93 (135)
T ss_pred CCCEEEEEEC--------CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEE
Confidence 5777766551 23578999999999999999877531 1 1111 11234677777643 333 4332
Q ss_pred eccCcccccccccccCCCCcccceeeecC
Q 004037 480 HQPGSEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 480 ~~pg~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
-.|...+...| ++.+..+|+..-
T Consensus 94 i~~~~~~~~~~------~~~~~~~W~~L~ 116 (135)
T cd04017 94 AKPLVKLDLEE------DFPPKLQWFPIY 116 (135)
T ss_pred eeeeeecccCC------CCCCCceEEEee
Confidence 23433332222 677899999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.17 Score=47.72 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=37.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC---CCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS---EKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s---~~~~kv~~~~e~id~~G 471 (777)
.+||++..+ +. .++||.++++++||+|||.|.|..+. ++.......+++.|.+.
T Consensus 20 ~dpYv~v~l-----~~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 20 NDAYVIIQL-----GK---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CCceEEEEE-----CC---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 578887766 21 35789999999999999998887755 22333345577777663
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.15 Score=47.98 Aligned_cols=53 Identities=6% Similarity=-0.092 Sum_probs=37.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++.++. +.++.||.++++|+||+|||.|.+..+... -..++...|.+..
T Consensus 22 sDpYv~v~l~-------~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~~ 74 (121)
T cd08401 22 RDCYCTVNLD-------QEEVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDVL 74 (121)
T ss_pred cCcEEEEEEC-------CccEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCCC
Confidence 5788776661 113478999999999999999999886432 2445666776643
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=90.72 E-value=4.5 Score=38.73 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=78.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeee-cCCCCCcccceeeEeccc---CC----CCcEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQ-RKTLSPKWHEEFNIPIST---WD----SPNVLVIE 352 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~---k~kTkVi-~~TlnP~WnEtF~f~V~~---~e----~~~~L~V~ 352 (777)
.-.+.|+|++..+++. ...-.||+...+.. ..+|... ..+-.-.|||+|.+.+.- .. ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 3467889999998875 22345666655553 3455443 234556999999887541 11 23578999
Q ss_pred EeecCCCCC-ceeEEEEEeCCcccCC--CccceeeeccCC--CCcEEEEEEEEEecCC
Q 004037 353 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEESA 405 (777)
Q Consensus 353 V~D~D~~~D-d~IG~v~I~L~~L~~~--~~~~~W~~L~~~--~~GeI~LsL~y~p~s~ 405 (777)
|+.....+. ..+|.+.++|+++... .....-++|... ....|++.+.+.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~~ 139 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELRE 139 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECcc
Confidence 998754443 5999999999998874 344566777653 3567888888776543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.31 Score=44.41 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=37.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+..++ +. .++||++.+++.||+|||.|.|.......+. ..++..|.+.
T Consensus 21 ~dpyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~--l~v~v~d~~~ 72 (105)
T cd04050 21 PSPYVELTV-----GK---TTQKSKVKERTNNPVWEEGFTFLVRNPENQE--LEIEVKDDKT 72 (105)
T ss_pred CCcEEEEEE-----CC---EEEeCccccCCCCCcccceEEEEeCCCCCCE--EEEEEEECCC
Confidence 577777666 22 4578999999999999999888875544333 3577777766
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.22 E-value=1 Score=44.99 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=60.5
Q ss_pred CCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEeccc--CCCCcEEEEEEeecCCCC-CceeEEEEEeCCcc
Q 004037 304 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374 (777)
Q Consensus 304 G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~~--~e~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L 374 (777)
..+|-||++.+ +.+ ...|..+.-+..+.|||...|++.- ......|.|.|||.+..+ ...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677777765 332 2355555545678999998888763 334458999999987654 67899999998864
Q ss_pred cCCCccceeeeccCCCCcEEEEEEEEEecC
Q 004037 375 RDGQRHDMWIPLQNIKIGRLHLAITVLEES 404 (777)
Q Consensus 375 ~~~~~~~~W~~L~~~~~GeI~LsL~y~p~s 404 (777)
.. .| .+|...+.+.....+
T Consensus 108 ~g--------~L---r~G~~~l~lw~~~~~ 126 (159)
T cd08397 108 DG--------TL---RRGRQKLRVWPDVEA 126 (159)
T ss_pred CC--------cE---ecCCEEEEEEeCCCC
Confidence 22 22 368888888754443
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.22 Score=49.15 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=49.7
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceE------Ee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW------VH 480 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~------v~ 480 (777)
.+||++..+ +.. +.||.+.++++||+|||.|.+........ -...++..|.+. .++. |-. +.
T Consensus 35 ~DPYV~V~~-----~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~ 105 (151)
T cd04018 35 VDPYVEVSF-----AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSKIS 105 (151)
T ss_pred cCcEEEEEE-----CCE---eeecceEcCCCCCCcceEEEEEeeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHHhc
Confidence 578887665 222 35788999999999999998875322221 133477777764 4443 433 22
Q ss_pred ccCcc-----cccccccccCCCCc
Q 004037 481 QPGSE-----VAQTWEPRKGKNRR 499 (777)
Q Consensus 481 ~pg~~-----v~~~w~~~~~~~r~ 499 (777)
..+.+ ..-+|-...+.||.
T Consensus 106 ~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 106 NSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred cCCccccCCccCceEEEeecCccc
Confidence 22322 23577777777775
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.27 Score=45.19 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=38.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc--CCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~--~s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+. . .++||.+++++.||+|||.|.|.. +..+.......+++.|.+.
T Consensus 21 ~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 21 IDPVVKVEVG-----G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred CCCEEEEEEC-----C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 5788877662 2 347899999999999999988865 3333334455677888764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.4 Score=44.35 Aligned_cols=107 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeec--C--CCCCcccceeeEecc--cCCCCcEEEEE
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQR--K--TLSPKWHEEFNIPIS--TWDSPNVLVIE 352 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~--~--TlnP~WnEtF~f~V~--~~e~~~~L~V~ 352 (777)
..+.|+|.++.+++........|-|+.+.+ |.+ ...|+... + ...+.|||...|.+. .......|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 467899999999987654446788888866 543 23444321 1 235779999888765 33334589999
Q ss_pred EeecCCCC----------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 353 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 353 V~D~D~~~----------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
+|+....+ +..||.+.++|-+... .| .+|...|.+....
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW~~~ 136 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLWPPS 136 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEeccCC
Confidence 99865432 4688999888875332 12 3688888877543
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.35 E-value=3.5 Score=42.01 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=61.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~---k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D~ 358 (777)
.++|+|+.+..+ ..+.....--||++.| |.+ ..+|....-+.+|.|||...|.+. +......|.|.||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 567777777633 3222222335666544 442 225666556678999999888766 33344589999999632
Q ss_pred CC-----------------CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 359 FV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 359 ~~-----------------Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
.+ +-.||-+.+.|-+... .| .+|+..|.+.-.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~~ 139 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQIS 139 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecCC
Confidence 11 2345555555543221 12 3788888887654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.34 Score=45.05 Aligned_cols=56 Identities=7% Similarity=-0.073 Sum_probs=37.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. .....++||.+.+++.||+|||.|.|........ ...++..|.+..
T Consensus 21 ~Dpyv~v~~~-----~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~--~l~v~v~d~d~~ 76 (119)
T cd04036 21 PDCYVELWLP-----TASDEKKRTKTIKNSINPVWNETFEFRIQSQVKN--VLELTVMDEDYV 76 (119)
T ss_pred CCcEEEEEEc-----CCCCccCccceecCCCCCccceEEEEEeCcccCC--EEEEEEEECCCC
Confidence 5677766551 1112457899999999999999988877554322 245777776653
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=89.06 E-value=0.27 Score=45.89 Aligned_cols=58 Identities=12% Similarity=0.073 Sum_probs=37.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+..... .....++||.+.++++||+|||+|.+....+....+. ++..|.+
T Consensus 21 ~DPyv~v~~~~~~~-~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~--~~V~d~d 78 (120)
T cd04048 21 SDPFVVVYVKTGGS-GQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLR--FEVYDVD 78 (120)
T ss_pred CCcEEEEEEEcCCC-CceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEE--EEEEEec
Confidence 57777766632210 1234568999999999999999988865444444333 5555554
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=88.94 E-value=3.1 Score=37.94 Aligned_cols=84 Identities=17% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCcEEEEEeCC-eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCceeEEEEEeCCcccCCCcccee
Q 004037 305 LADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMW 383 (777)
Q Consensus 305 ~sDPYV~v~Lg~-~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W 383 (777)
.++-.+.+.+++ ...+|.-... .+..|++.|.|.+.. .+.|.|.||-+|. ..+.|-.-+.|.+.. +..-
T Consensus 8 ~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~~----~~~~ 77 (98)
T cd08687 8 CSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDER----HEVQ 77 (98)
T ss_pred ccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhhc----ccce
Confidence 367788899987 5666765433 578999999999874 6789999998765 344566667777632 2233
Q ss_pred eeccCCCCcEEEEEEEE
Q 004037 384 IPLQNIKIGRLHLAITV 400 (777)
Q Consensus 384 ~~L~~~~~GeI~LsL~y 400 (777)
.+|. ++|.+...++|
T Consensus 78 ~~le--pqg~l~~ev~f 92 (98)
T cd08687 78 LDME--PQLCLVAELTF 92 (98)
T ss_pred eccc--cccEEEEEEEe
Confidence 4444 47888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.68 Score=45.51 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=48.1
Q ss_pred ccCCCcCCcccccCCCccccccccceeccC-CCCcccccccccccCCCCCcCcccceeeeecCCc--eeeceEEeccCcc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QETGIWVHQPGSE 485 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~-t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~--ee~gi~v~~pg~~ 485 (777)
..+||++..+ +. .+.||++.++ ++||+|||.|.|........ ..++++.|.++. ++.-..+..|-.+
T Consensus 20 ~sDPYV~v~l-----~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~--~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 20 VPEVFVKAQL-----GN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFED--HLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCeEEEEEE-----CC---EEeeeEeccCCCCCCcccCcEEEEecCccCC--eEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 3678887766 22 3456766655 69999999988876422222 234566666643 3331223344444
Q ss_pred cccccccccCCCCcccceeeecC
Q 004037 486 VAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 486 v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
+... ..++.+..+|++.-
T Consensus 90 l~~~-----~~~~~~~~~W~~L~ 107 (150)
T cd04019 90 IERR-----VDDRPVPSRWFSLE 107 (150)
T ss_pred Cccc-----CCCCccCCceEECc
Confidence 4221 23445677787665
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.56 Score=43.37 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=34.1
Q ss_pred cCCCcCCcccccCCCcccccccccee-ccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDI-RESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~v-kk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. . .++||++ +++++||.|||.|.|..+....+. ..+++.|.+..
T Consensus 22 ~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~--l~i~v~d~~~~ 75 (118)
T cd08681 22 QDPYCVLRIG-----G---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPI--LKVAVFDDDKR 75 (118)
T ss_pred CCceEEEEEC-----C---CccccccccCCCCCCccCceEEEEecCCCCCE--EEEEEEeCCCC
Confidence 5777776552 1 3456665 456899999999988876543333 34666676543
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=88.42 E-value=0.56 Score=45.00 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=34.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~ 470 (777)
.++|++..+ +.. ++||.+.++++||+|||.|.+.. ..... ....+++.|.+
T Consensus 48 ~DPYVkV~~-----~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~~~--~~L~v~V~D~d 99 (127)
T cd04032 48 TDGYVKVFF-----GGQ---EKRTEVIWNNNNPRWNATFDFGSVELSPG--GKLRFEVWDRD 99 (127)
T ss_pred CCeEEEEEE-----CCc---cccCceecCCCCCcCCCEEEEecccCCCC--CEEEEEEEeCC
Confidence 577877655 221 68999999999999999987753 22222 23457777766
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=88.33 E-value=0.66 Score=44.07 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=40.6
Q ss_pred cEEEEEEEEEecCCC--ccccCCCcCCcccccCCCccccccccceecc-CCCCcccccccccccCCCCCcCcccceeeee
Q 004037 392 GRLHLAITVLEESAK--QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEPIN 468 (777)
Q Consensus 392 GeI~LsL~y~p~s~~--lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk-~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id 468 (777)
|.|++.+.-...... +...+||+...+ |. .+.||.+.+ ++.||.|||.|.+...... .. ..+++.|
T Consensus 2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~l-----g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~-~~--l~~~V~d 70 (121)
T cd04016 2 GRLSITVVQAKLVKNYGLTRMDPYCRIRV-----GH---AVYETPTAYNGAKNPRWNKTIQCTLPEGV-DS--IYIEIFD 70 (121)
T ss_pred cEEEEEEEEccCCCcCCCCCCCceEEEEE-----CC---EEEEeEEccCCCCCCccCeEEEEEecCCC-cE--EEEEEEe
Confidence 556655542222111 234688887666 22 234677754 4899999999998875432 22 4477766
Q ss_pred cC
Q 004037 469 IE 470 (777)
Q Consensus 469 ~~ 470 (777)
.+
T Consensus 71 ~d 72 (121)
T cd04016 71 ER 72 (121)
T ss_pred CC
Confidence 65
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.84 Score=43.22 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=31.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+. . .+..||+++ +++||.|||.|.|...+.....+ .+...|.+
T Consensus 22 ~DPYv~v~l~-----~--~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l--~v~v~d~~ 72 (126)
T cd08400 22 PHPYCVISLN-----E--VKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSF--TISLSNKA 72 (126)
T ss_pred CCeeEEEEEC-----C--EeEEEeecC-CCCCCccCCEEEEecCCCCcCEE--EEEEEECC
Confidence 5788877662 1 233577775 57999999999887544333322 34555554
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.38 Score=47.66 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=45.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--CceeeceE-Ee---ccC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-VH---QPG 483 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~gi~-v~---~pg 483 (777)
.+||+..++ +.. ++.||++.+++.||.|||.|.+..... ...+ .+...|.+ |.+..|.. +. ...
T Consensus 58 sDPYv~V~l-----~~~--~~~rT~v~~~~~nP~WnE~F~~~~~~~-~~~l--~~~V~d~d~~~~~~IG~~~i~l~~l~~ 127 (158)
T cd04015 58 SDPYATVDL-----AGA--RVARTRVIENSENPVWNESFHIYCAHY-ASHV--EFTVKDNDVVGAQLIGRAYIPVEDLLS 127 (158)
T ss_pred cCeEEEEEE-----CCe--EeeEEEEeCCCCCCccceEEEEEccCC-CCEE--EEEEEeCCCcCCcEEEEEEEEhHHccC
Confidence 588887776 222 236888888999999999988765322 2233 35555544 44434543 11 011
Q ss_pred cccccccccccCCCCc
Q 004037 484 SEVAQTWEPRKGKNRR 499 (777)
Q Consensus 484 ~~v~~~w~~~~~~~r~ 499 (777)
.+...+|-+....+++
T Consensus 128 g~~~~~w~~L~~~~~~ 143 (158)
T cd04015 128 GEPVEGWLPILDSNGK 143 (158)
T ss_pred CCCcceEEECcCCCCC
Confidence 2223566666554433
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.28 Score=45.16 Aligned_cols=54 Identities=11% Similarity=0.027 Sum_probs=39.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCccc-ccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~-Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|+..++ +. .++||++.++++||+| ||.|.+..+......-...+++.|.+.
T Consensus 21 ~Dpyv~v~~-----~~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 21 TDAFVEVKF-----GS---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CCceEEEEE-----CC---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 577877666 22 5688999999999999 999888876655443445677777763
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.64 Score=43.87 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=46.6
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceE-EeccCc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQPGS 484 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~-v~~pg~ 484 (777)
..+||++..+ +..+ .++||++.++++||+|||.|.+........ ...+++.|.+. .++. |-. +.-..-
T Consensus 20 ~~DPYv~v~~-----~~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~--~L~~~V~d~d~~~~dd~iG~~~i~l~~~ 91 (124)
T cd04037 20 KSDPYLKIKL-----GKKK-INDRDNYIPNTLNPVFGKMFELEATLPGNS--ILKISVMDYDLLGSDDLIGETVIDLEDR 91 (124)
T ss_pred CCCcEEEEEE-----CCee-ccceeeEEECCCCCccceEEEEEecCCCCC--EEEEEEEECCCCCCCceeEEEEEeeccc
Confidence 3677877666 2222 235666677899999999988865332222 23466677663 3333 433 222222
Q ss_pred ccccccccccCCCCcc
Q 004037 485 EVAQTWEPRKGKNRRL 500 (777)
Q Consensus 485 ~v~~~w~~~~~~~r~~ 500 (777)
...+||..+...+..+
T Consensus 92 ~~~~~~~~~~~~~~~~ 107 (124)
T cd04037 92 FFSKHRATCGLPPTYE 107 (124)
T ss_pred ccchHHHhccCCCccc
Confidence 2246666655555433
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.4 Score=44.38 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=36.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .+.||++.++++||+|||.|.|....... .....+++.|.+.
T Consensus 26 ~DPYv~v~~-----~~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d~ 78 (108)
T cd04039 26 MDPFVIISF-----GR---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLDKDK 78 (108)
T ss_pred cCceEEEEE-----CC---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEECCC
Confidence 477776655 21 34689999999999999998886643332 2334577777763
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=86.68 E-value=0.5 Score=44.53 Aligned_cols=54 Identities=11% Similarity=-0.008 Sum_probs=36.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC-CCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS-EKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s-~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .++||++++++.||+|||.|.|.... .........+++.|.+.
T Consensus 21 ~dpyv~v~~-----~~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 21 SSAYVELDF-----DG---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred cCcEEEEEE-----CC---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 577776655 21 34789999999999999998887753 23333445566766653
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.24 Score=44.75 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=52.0
Q ss_pred ccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCceeeceEE----eccCccccccccc
Q 004037 431 NKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWV----HQPGSEVAQTWEP 492 (777)
Q Consensus 431 kKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ee~gi~v----~~pg~~v~~~w~~ 492 (777)
.||++|+...||.|+|+|.|...-.+.+.|...+.........+.-.|+ ...|++...||.+
T Consensus 37 ~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~geeE~~HW~e 102 (103)
T cd08684 37 FKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLSTQETDHWLE 102 (103)
T ss_pred ccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCCHHHhhhhhc
Confidence 7899999999999999999999999999999988888866667774553 3567777899975
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=86.24 E-value=0.62 Score=42.75 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=36.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+. . .+..+|.++++ .||.|||.|.|..+..+.......+...|.++.
T Consensus 18 ~dpyv~v~~~-----~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 18 RDPYCTVSLD-----Q--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred CCceEEEEEC-----C--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 5777776662 1 13367888888 999999999988866554444444555555443
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=85.58 E-value=0.83 Score=44.77 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=35.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||+...+ +. .++||++.+++.||.|||.|.|..+.. .....+++.|.+
T Consensus 21 ~sDPYV~v~~-----g~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 21 SSDPYVVLTL-----GN---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred CcCcEEEEEE-----CC---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 3577776555 22 358899999999999999988876433 223457777766
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=85.51 E-value=1.1 Score=42.21 Aligned_cols=52 Identities=12% Similarity=-0.037 Sum_probs=36.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++.++. . .+.||.+.+++.||.|||.|.|..... ......++..|.+.
T Consensus 17 ~Dpyv~v~l~-----~---~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~ 68 (121)
T cd08378 17 NDPVVEVKLG-----N---YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDK 68 (121)
T ss_pred CCCEEEEEEC-----C---ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCC
Confidence 6788877762 1 357899999999999999988875322 22333466666654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=85.31 E-value=0.76 Score=43.21 Aligned_cols=54 Identities=11% Similarity=0.000 Sum_probs=36.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. .+++|.+.+++.||+|||.|.+.............++..|.+.
T Consensus 15 ~Dpyv~v~~-----~~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 15 GDRIAKVTF-----RG---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred CCCEEEEEE-----CC---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 577776655 11 2478999999999999999888764332233334566666654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=85.12 E-value=1.3 Score=42.05 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=33.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+ +.. +..||.+++++.||.|||.|.+.... .. ...++..|.+
T Consensus 35 ~dpyv~v~~-----~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~--~~--~l~~~v~d~~ 84 (132)
T cd04014 35 LDPYVSIDV-----DDT--HIGKTSTKPKTNSPVWNEEFTTEVHN--GR--NLELTVFHDA 84 (132)
T ss_pred cCcEEEEEE-----CCE--EEeEEeEcCCCCCCCcceeEEEEcCC--CC--EEEEEEEeCC
Confidence 577877666 222 23578888899999999998887752 12 2345555554
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=85.04 E-value=0.52 Score=45.12 Aligned_cols=52 Identities=8% Similarity=-0.086 Sum_probs=35.7
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..+||+...+ |. .+.||++.++++||+|||.|.|....... ...+++.|.+.
T Consensus 23 ~sDPYv~i~~-----g~---~~~rTk~~~~~~nP~WnE~f~f~v~~~~~---~l~v~V~d~d~ 74 (126)
T cd08379 23 STDAYCVAKY-----GP---KWVRTRTVEDSSNPRWNEQYTWPVYDPCT---VLTVGVFDNSQ 74 (126)
T ss_pred CCCeeEEEEE-----CC---EEeEcCcccCCCCCcceeEEEEEecCCCC---EEEEEEEECCC
Confidence 3678877655 32 34688888999999999998887643221 34567777654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.93 E-value=3.3 Score=49.27 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=109.3
Q ss_pred ccceeeeeeecCCCCCeEeeEEEEecCCC-----------------------CCeEEEEEEEEEeeCCCccceeeehhhh
Q 004037 115 AKKALVQHLYLGRNPPMLTEMRVLRQSND-----------------------DDHMVLELGMNFLTADDMSAILAVKLRK 171 (777)
Q Consensus 115 i~~v~~~~ftLGs~PPrI~~Vrv~~~~~~-----------------------~d~vvLDldis~~~~~D~~i~l~v~l~~ 171 (777)
+..+.+.++-||.+-|.+++.+++.-+.. -.-+.+=++++|.|..--+ +.+.+
T Consensus 146 L~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTts--id~~s-- 221 (1051)
T KOG3532|consen 146 LQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTS--IDVST-- 221 (1051)
T ss_pred hcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCccee--cCCcc--
Confidence 55677999999999999999999841110 0123344556665421111 11111
Q ss_pred ccCcceeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceeEEEEeecccCCCccccCcchHHHHHHHHHHHhh
Q 004037 172 RLGFGMWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFE 251 (777)
Q Consensus 172 rlG~G~~~~v~V~~l~~~G~lRV~l~L~~~~P~vg~v~vsFle~P~idf~lkpl~~~G~dV~~iPGLs~~I~~~I~~~l~ 251 (777)
-++.| ..+.|+-.+++|.+|+.+...+ .- .-+++|++.|.+...++.-+ .++=| .--|...|...+..++.
T Consensus 222 ~~~kk--~S~~iKl~~l~Gm~r~~~~r~p-y~---hw~~sf~G~P~~e~di~s~~--qg~qL-Q~~I~q~i~~~ir~~~~ 292 (1051)
T KOG3532|consen 222 IIAKK--ASLSVKITKLTGMVRVILSRQP-YH---HWTFSFVGQPIFETDINSQI--QGHQL-QRLIPQIIKEAIRRSLQ 292 (1051)
T ss_pred ccccC--CceeEEEEEeccceeEEEEecc-ce---eeeeeeccCchhhhhhHHHH--HHHHH-HHHhHHHHHHHHHHHHH
Confidence 11111 2455666899999999874333 22 23789999998777765321 11100 11244456667777777
Q ss_pred hcccCCceeEecccccCC-C--CC-CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC
Q 004037 252 QTLVEPNMLVVDVDKFAS-P--QP-GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP 316 (777)
Q Consensus 252 ~~LV~Pn~~~Idl~k~~s-~--~~-~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~ 316 (777)
....|||+. +.+..++- + .+ +.--++..-.+.|.+.|++.++..|.. .++...-||.+.+.+
T Consensus 293 rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 293 RKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred hhccCcchh-hhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 788999864 23332221 1 11 100112223467999999999988854 467888999999865
|
|
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=84.27 E-value=0.71 Score=43.47 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=37.3
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
..+||+..++. . ...++||+++++++||+|||.|.+..... ... ..++..|.+..
T Consensus 17 ~~dpyv~v~~~-----~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~--l~~~v~d~~~~ 71 (126)
T cd08678 17 SSNPYCVLEMD-----E-PPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKE--LLFEVYDNGKK 71 (126)
T ss_pred CcCCEEEEEEC-----C-CCcEEEeEEEecCCCCccCceEEEEeCCC-CCE--EEEEEEECCCC
Confidence 36777776652 1 12457999999999999999988877432 222 34677777654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=83.21 E-value=1.7 Score=40.43 Aligned_cols=53 Identities=11% Similarity=-0.052 Sum_probs=34.9
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
..+||+...+ + -.+.+|.+.++++||.|||.|.+........ ...++..|.+.
T Consensus 23 ~~dPyv~v~~-----~---~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~--~l~i~v~d~~~ 75 (128)
T cd04024 23 KSDPYAILSV-----G---AQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQ--LLKLILWDKDR 75 (128)
T ss_pred CcCCeEEEEE-----C---CEEEecceecCCcCCccCCcEEEEecCCCCC--EEEEEEEECCC
Confidence 3577776554 2 1347888889999999999988776542222 33466666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=83.13 E-value=0.82 Score=42.10 Aligned_cols=52 Identities=15% Similarity=0.042 Sum_probs=35.6
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++.++ +. .+.||.+.++++||.|||.|.|........ ...++..|.+.
T Consensus 21 ~dPyv~v~~-----~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~--~l~v~v~d~~~ 72 (116)
T cd08376 21 SDPYVKFRL-----GN---EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQ--ILEIEVWDKDT 72 (116)
T ss_pred CCcEEEEEE-----CC---EeEecccccCCCCCceeEEEEEEecCCCCC--EEEEEEEECCC
Confidence 577776655 11 347888999999999999988876544322 33466677664
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=83.11 E-value=1.6 Score=40.12 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=35.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||+...+ +. .+.+|.+.+++.||.|||.|.+........ ...++..|.+..
T Consensus 28 ~dPyv~v~~-----~~---~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~--~l~i~v~d~~~~ 80 (121)
T cd08391 28 SDPYVIVRV-----GA---QTFKSKVIKENLNPKWNEVYEAVVDEVPGQ--ELEIELFDEDPD 80 (121)
T ss_pred cCCEEEEEE-----CC---EeEEccccCCCCCCcccceEEEEeCCCCCC--EEEEEEEecCCC
Confidence 567776655 11 457888999999999999987766433222 334666666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.95 E-value=1.1 Score=55.92 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=62.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|.|+++|.. +.+++ .++|++.+|.+ ...+..|+||.+.++|.||+|||...+++ |
T Consensus 1512 ggqV~LsIsY~~--~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP---dp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1512 GGQVKLSISYNN--GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP---DPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred CceEEEEEEEcC--ceEEEEhhhhcccccccCCCCCCcceeEEecC---CchHhhhhhhccccccCCCchhhheeecCCc
Confidence 679999999873 22221 46788888733 34566779999999999999999877775 4
Q ss_pred CCCCcCcccceeeeecCCceee-ceE-EeccCccc
Q 004037 454 SEKSPKVADNFEPINIEGQQET-GIW-VHQPGSEV 486 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~ee~-gi~-v~~pg~~v 486 (777)
-+..+.-..++.+....|..|+ -++ +..|-..+
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhc
Confidence 4445544456777777777777 233 44554444
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=82.87 E-value=4.1 Score=39.47 Aligned_cols=69 Identities=23% Similarity=0.298 Sum_probs=46.9
Q ss_pred EeeeecCC-CCCcccceeeEecc--cCCCCcEEEEEEeecCCCC-C----ceeEEEEEeCCcccCCCccceeeeccCCCC
Q 004037 320 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (777)
Q Consensus 320 kTkVi~~T-lnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D~~~-D----d~IG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (777)
.|+...-+ .++.|||...|.+. +......|.|.||..+... . ..||.+.++|-+... .| .+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence 56655555 79999998888754 4445568999999987765 3 699999999886532 12 26
Q ss_pred cEEEEEEE
Q 004037 392 GRLHLAIT 399 (777)
Q Consensus 392 GeI~LsL~ 399 (777)
|...|.+.
T Consensus 92 G~~~L~lW 99 (142)
T PF00792_consen 92 GPQKLSLW 99 (142)
T ss_dssp EEEEEE-E
T ss_pred CCEEEEEE
Confidence 88777774
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.06 E-value=7.3 Score=35.63 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=45.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcccceeeEecc--cCCCCcEEEEEEeecC
Q 004037 287 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (777)
Q Consensus 287 L~VtVieAk~L~~~D~~G~sDPYV~v~L--g~~----k~kTkVi~~TlnP~WnEtF~f~V~--~~e~~~~L~V~V~D~D 357 (777)
+.+.+....+.........++-||.+.+ |++ ...|+.+.-...+.|||...|++. .......|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654432223578888866 443 234555444556899999888765 3334458999999854
|
Outlier of C2 family. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=80.43 E-value=1.6 Score=41.11 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=37.6
Q ss_pred ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 409 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 409 v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
..+||++..+.... ......+++|.+.++++||.|||.|.+...... . ...++..|.+
T Consensus 20 ~~Dpyv~v~~~~~~-~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~-~--~l~~~v~d~~ 77 (133)
T cd04033 20 ASDPYVKISLYDPD-GNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE-H--RLLFEVFDEN 77 (133)
T ss_pred CcCcEEEEEEECCC-CCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC-C--EEEEEEEECC
Confidence 35788776663211 112334578999999999999999888765432 2 2356667765
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=80.07 E-value=1.7 Score=40.62 Aligned_cols=54 Identities=11% Similarity=-0.128 Sum_probs=34.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.++|+...+ +.....+.||.+.++++||.|||.|.+........ ...+++.|.+
T Consensus 22 ~Dpyv~v~~-----~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~--~L~i~v~d~d 75 (126)
T cd04043 22 SDPYVTLVD-----TNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPL--WISATVWDRS 75 (126)
T ss_pred CCceEEEEE-----CCCCeeeecccEecCCCCCcccceEEEEcCCCCCC--EEEEEEEECC
Confidence 456665443 11112357888888999999999988877554222 2345666655
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 777 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-09 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 5e-08 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 5e-08 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-08 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 5e-08 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 1e-07 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 1e-07 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 5e-07 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 7e-07 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 9e-07 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 9e-07 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 1e-06 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 1e-06 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 1e-06 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 2e-06 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-06 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 2e-06 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-05 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-05 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 1e-04 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 1e-04 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-04 | ||
| 1gmi_A | 136 | Structure Of The C2 Domain From Novel Protein Kinas | 2e-04 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 2e-04 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 2e-04 | ||
| 1cjy_A | 749 | Human Cytosolic Phospholipase A2 Length = 749 | 5e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C Epsilon Length = 136 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 777 | |||
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 5e-33 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 1e-32 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 1e-28 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 3e-28 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 1e-26 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 2e-25 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 3e-24 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 3e-24 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 1e-22 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 2e-22 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 2e-22 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 6e-22 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 2e-21 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 3e-21 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 4e-21 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 4e-20 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 6e-20 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 1e-19 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 1e-19 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 3e-19 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 6e-19 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 7e-18 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 2e-18 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 6e-18 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 1e-17 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 5e-15 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 3e-17 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 3e-17 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 6e-17 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 1e-16 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 2e-16 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 2e-16 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 7e-16 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 8e-16 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 1e-15 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 4e-15 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 9e-15 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 2e-14 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 2e-14 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 3e-14 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 2e-12 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 4e-08 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 8e-07 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 2e-06 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 8e-06 |
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-33
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 288 RVEVVEASDMK---PSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 341
V V+ A+ + D+ DPYV+ + R RT+ ++P W+E F +
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65
Query: 342 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
NVL I + D ++ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 66 PNQE-NVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-32
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 336
S + V +V+V++A+D+ +D +G +DP+ +LG R +T T K L+P+W++ F
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVF 64
Query: 337 NIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI---PLQNIKIG 392
PI D +VL + V D+D D LG I + +RDGQ + + L+ G
Sbjct: 65 TFPIK--DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKG 122
Query: 393 RLHLAITVL 401
++L + ++
Sbjct: 123 VIYLEMDLI 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-28
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 288 RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEE 335
++++ EA +KP+ L DPY+ + R +T T++KT SP WH+E
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 336 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIG 392
F + + + + V DD + +CTI +L + WI L+ G
Sbjct: 69 FVTDVC---NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123
Query: 393 RLHLAITVLEESA 405
++++ I + S
Sbjct: 124 KVYVIIDLSGSSG 136
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
+ A + VV A ++ D G +DPYV Q+G + RTKT L+P W E F+
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC 72
Query: 341 STWDSPNVLVIEVRDKDHFV------------DDTLGDCTINISDLRDGQRHDMWIPLQN 388
+S + + + V D+D + DD LG I + L D+W L
Sbjct: 73 H--NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDK 128
Query: 389 IKI-----GRLHLAITV 400
G + L I+V
Sbjct: 129 RTDKSAVSGAIRLHISV 145
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 268 ASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPY 317
+ P S + Y RV + EA ++P+ + L DPY+ +
Sbjct: 12 SGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV 71
Query: 318 R-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLR 375
R +T T++KT P ++EEF ++ L + V + D + +CT+ +L
Sbjct: 72 RVGQTSTKQKTNKPTYNEEFCANVT---DGGHLELAVFHETPLGYDHFVANCTLQFQELL 128
Query: 376 DGQR----HDMWIPLQNIKIGRLHLAIT 399
+ W+ L+ G++ + IT
Sbjct: 129 RTTGASDTFEGWVDLE--PEGKVFVVIT 154
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST--WDS 345
RV V AS++ P G DP V + +TK L+P W+E + D
Sbjct: 10 RVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDF 68
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-------IGRLHLA 397
+ L I V+D + + +G T+ + DL Q + L ++ + L
Sbjct: 69 SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLV 128
Query: 398 IT 399
I
Sbjct: 129 IG 130
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 3e-24
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEE 335
S P V +V A ++ +D DPYV+ ++ + +P+W+E
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 336 FNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQNIKI-- 391
F +S + L ++ DKD DD +G+ TI + + +G + +
Sbjct: 62 FIFTVS--EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119
Query: 392 GRLHLAIT 399
G + +A++
Sbjct: 120 GEIWVALS 127
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 3e-24
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR------FRTKTQRKTLSPKWHE 334
+E RV V+ + D+ G +DPYV+ L +TKT +K+L+PKW+E
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 387
E + + L+ EV D++ DD LG + + L L
Sbjct: 76 EILFRVH--PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 388 -----NIKIGRLHLAIT 399
+ G L L +T
Sbjct: 134 PRSHKSRVKGYLRLKMT 150
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-22
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
++ V+ A + PYV+ + +T+ T SPKW + + ++ +
Sbjct: 39 QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT---PVS 95
Query: 348 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQN-------IKIGRLHL 396
L V D LG ++I + + + ++ + LQ IG L +
Sbjct: 96 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 2e-22
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 20/147 (13%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY------RFRTKTQRKTLSPKWHE 334
+ RV+V+ + D+ G +DPYV+ L +TKT +K+L+PKW+E
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 387
E + + ++ EV D++ DD LG + + L L
Sbjct: 64 EILFRVL--PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 388 -----NIKIGRLHLAITVLEESAKQGV 409
+ G L L +T L ++ +
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDE 148
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 6e-22
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V +A ++ P D NGL+DPYVK +L P + +TKT + +L+P+W+E F +
Sbjct: 34 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93
Query: 343 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
D L +E+ D D +D +G + IS+L D W L + + G
Sbjct: 94 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEG 143
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-21
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLS 329
FS+ + + + ++ A +KP D NGLADPYVK L P + RTKT R T +
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 330 PKWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPL 386
P W+E T + L I V D+D F ++ +G+ ++ L+ QR + I L
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
Query: 387 QN 388
+
Sbjct: 139 ER 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P + F TK RKTL+P
Sbjct: 24 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 83
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 388
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 84 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-21
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P + F TK RKTL+P
Sbjct: 32 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 91
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNI 389
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 92 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
Query: 390 K 390
+
Sbjct: 152 E 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 94.6 bits (234), Expect = 4e-20
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 281 KEPVAYARVEVVEASD---MKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHE 334
+ V V+ A+ D+ DPYV+ + R RT+ ++P W+E
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394
F + VL I + D ++ +D+TLG T +S ++ G++ ++ + L
Sbjct: 74 TFEFILDPNQEN-VLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 395 H 395
Sbjct: 133 E 133
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-20
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDS 345
R+ V+ A ++ D L DP+ K + T T + TL PKW++ +++ +
Sbjct: 8 RLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV---GK 64
Query: 346 PNVLVIEVRDKDHFVDDT----LGDCTINISDLRDGQRHDMWIPLQNIKIGR 393
+ + I V + LG + + + + + L K+
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRLDLCKLNP 115
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 331
FSV + V++++A ++ D +G +DP+VK L P ++ TK +RK L+P
Sbjct: 16 QFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH 75
Query: 332 WHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
W+E F ++ +L ++V D D F +D +G+ +I ++ + Q W L+
Sbjct: 76 WNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-19
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 333
+ +++A ++ P D NG +DP+VK L P Y+ RTK +K+L+P+W+
Sbjct: 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 334 EEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 388
+ + + L + V D D F +D LG+ I++S W PL+
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-19
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 330
+ +D A V +EA + +G D YV+G + +T +++ L
Sbjct: 16 HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72
Query: 331 KWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
W E +P++ + P L + +R D F G+ + + W L+
Sbjct: 73 TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 6e-19
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P +F TK RKTL+P
Sbjct: 9 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 68
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ
Sbjct: 69 FNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 126
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 7e-18
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
+ ++ F E L + FS+ V ++EA ++K D+
Sbjct: 109 PMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG 168
Query: 304 GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKD 357
GL+DPYVK L + +T ++ TL+P ++E F+ + V +V+ V D D
Sbjct: 169 GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228
Query: 358 HFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNIKIGRLHLAI 398
+D +G + + RH W LQ + LA+
Sbjct: 229 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAV 282
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
+ ++E + G DPYVK L P +T+T P +HE F P+
Sbjct: 31 LHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89
Query: 344 DSPNVLVIEVRDKDHF--VDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGR-LHLAIT 399
D L++ V ++ +G + + L + W L +GR HL +
Sbjct: 90 DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 6e-18
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ A D+ + +PYVK P + RTKT +KTL PKW++ F
Sbjct: 22 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81
Query: 344 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 387
+L I + D+ + + LG+ I + W LQ
Sbjct: 82 REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 331
F++ V +++A D+ D NG +DPYVK L P +F+TK RKTL+P
Sbjct: 10 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 69
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTI-NISDLRDGQRH-DMWIPLQ 387
++E F + + L V D D F D +G + N+ +L + +W +
Sbjct: 70 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129
Query: 388 -----NIKIGRLHLAITVLEESAK 406
+G L+ ++ L +
Sbjct: 130 EGGSEKADLGELNFSLCYLPTAGL 153
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 5e-15
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V +++AS++K DL G +DPYVK L + +T ++ TL+P ++E ++
Sbjct: 155 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 214
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 387
NV L I V D D ++ +G C + + + W L
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 274
Query: 388 N 388
Sbjct: 275 E 275
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ A D+ + +PYVK P + RTKT +KTL PKW++ F
Sbjct: 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84
Query: 344 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQN 388
+L I + D+ + + LG+ I + W LQ
Sbjct: 85 REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQT 133
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 341
V +++A ++K D+ G +DPYVK L + +T T+++ L+P ++E F+IP
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 387
++I V DKD +D +G ++ +H W L+
Sbjct: 80 KLRET-TIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-17
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 29 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88
Query: 344 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNI 389
V +V+ V D D +D +G + + RH W LQ
Sbjct: 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148
Query: 390 KIGRLHLAI 398
+ LA+
Sbjct: 149 EEVDAMLAV 157
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-16
Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPIST 342
+ +++ S++ ++ + P FRT+ + + ++E F + +S
Sbjct: 47 ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106
Query: 343 WDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDMWIPLQN 388
L ++V D +++ LG I+++++ R G+R W L +
Sbjct: 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 289 VEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V E + +D ++PYVK L P + +T +R T++P + E I
Sbjct: 27 VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86
Query: 343 WDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
L V F + LG+ I + + ++ D +PL
Sbjct: 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH 133
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V ++ +G +DPYV+ L P R +T +KTL+P + + F+ +S
Sbjct: 28 VVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86
Query: 344 DSPN-VLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L + V++ F+ LG + ++ + W L
Sbjct: 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 7e-16
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 341
V V++A + SD++GL+DPYVK L + +T ++ T + ++E F+IP
Sbjct: 34 VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
+ + + V D + ++ +G + + G H W L +
Sbjct: 94 SLEEI-SVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-16
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
D L I V D D +D +G C + IS + +H + W LQN
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKP-------SDLNGLADPYVKGQLGPYR---FRTKTQ 324
FS + V V+EA D+ P ++PYVK L P + +T +
Sbjct: 16 HFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK 75
Query: 325 RKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 382
RKT P + E + I ++ L++ V D D F +G ++ + ++ +
Sbjct: 76 RKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135
Query: 383 WIPLQN 388
W L
Sbjct: 136 WKALIP 141
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 4e-15
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 342
+A+ V A + D Y+K G FRT +P+W ++ +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 343 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+ L ++V D D+ DD LG C G H++ L + GR+ +
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSGF-HEVTCELNH---GRVKFSYHA 502
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-15
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGL-ADPYVKGQLGPY---RFRTKTQRKTLSP 330
+FS++ V + EA + D + +DPY+K + P + +T+ RKTL P
Sbjct: 12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71
Query: 331 KWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ-RHDMWIPL 386
+ E F + L + D F DD +G+ I +S + + + M +
Sbjct: 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131
Query: 387 Q 387
Sbjct: 132 I 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
+ V+ D+ D +PYVK L P + +TK RKT +P ++E +
Sbjct: 24 IMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82
Query: 344 DSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
++ L + V + + LG T+ + D + W L
Sbjct: 83 ETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-14
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD 344
+ V V +A + + YV ++ + T + P W ++F I+
Sbjct: 5 SLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEIN--R 58
Query: 345 SPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 387
L +EV +K D +G I + + + + W+ L
Sbjct: 59 LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 289 VEVVEASDMKPSDL-NGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 342
VEV+ A + PYVK L +T+ RKTL P + + S
Sbjct: 34 VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES- 92
Query: 343 WDSPNVLVIEV-RDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
VL + V D +G I + +L W L
Sbjct: 93 -PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF 138
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V +A + + YV ++ T + P W ++F I+ D
Sbjct: 18 VGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIA-VRGSQPSWEQDFMFEINRLDLG-- 71
Query: 349 LVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 387
L +EV +K D +G I + + + + W+ L
Sbjct: 72 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 112
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V+EA+++K NG ++PY + +G + T+T + TL+PKW+ I +V
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY-QDV 449
Query: 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380
L + + D+D F DD LG I ++ +R Q
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 51.9 bits (123), Expect = 5e-07
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 12/132 (9%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPK---WHEEF--NIPIS 341
++ ++EA ++ P Y + L RT ++ ++ S W E F N +
Sbjct: 14 KLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
L + K +G T+ ++ L + W P+ +
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGS 128
Query: 401 LEESAKQGVDSP 412
G
Sbjct: 129 GGGGGSGGGSGG 140
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 50/408 (12%), Positives = 108/408 (26%), Gaps = 134/408 (32%)
Query: 64 FQRRVLKDSETVRWLN--HAIEK----MWPICM--EQIASQ---KLLLPIIPWFLEKYKP 112
+ +L E + A+ W + E++ + ++L + + K
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 113 WTAKKALVQHLY------LGRNPPMLTEMRV------------LRQSNDDDHMVLELGM- 153
+ +++ +Y L + + + V L + +++++ G+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVL 159
Query: 154 ----NFLTADDMSAILAVKLRKRLGFGM-WAKM-------HVTGM------HVEGKVLVG 195
++ D L+ K++ ++ F + W + V M ++
Sbjct: 160 GSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 196 VKFLRRWPF-----IDRLRVCFAEPPYFQMTVKPIFTHGL----DVTEFPGIAGWLDKLL 246
LR PY + L +V K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVLLNV--------QNAKAW 259
Query: 247 SIAFE---QTLV-EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVE----ASDMK 298
+ AF + L+ V D F S S+D + EV D +
Sbjct: 260 N-AFNLSCKILLTTRFKQVTD---FLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCR 314
Query: 299 PSDLNGLA---DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355
P DL +P + E ++TWD N +
Sbjct: 315 PQDLPREVLTTNPRRLSIIA------------------ESIRDGLATWD--NWKHVNCDK 354
Query: 356 KDHFVDDTLG------------DCTINISDLRDGQRHDMWIPLQNIKI 391
++ +L ++ IP + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----FPP----SAHIPTILLSL 394
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-07
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 285 AYARVEVVEASDMKPSDLNG-LADPYV-----KGQLGPYRFRTKTQRKTLSPKWHEEFNI 338
+ R+ + G +PY + ++ T+ P W F+
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGR 393
I + V+ I V+ K+ D + + T+ + L ++ + ++W+ L+ GR
Sbjct: 70 HI---NKGRVMQIIVKGKN---VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGR 121
Query: 394 LHLAITVLEESA 405
+ + E +
Sbjct: 122 MLMNARYFLEMS 133
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 285 AYARVEVVEASDMKPSDLNGLADPY----VKGQLGPYRFRTKTQR-KTLSPKWHEEFNIP 339
+ R+ + P+ +K L R +T Q+ T+ P+W F+
Sbjct: 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH 65
Query: 340 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGRL 394
I ++++ ++ + + T+ +S L ++ + + W+ LQ ++
Sbjct: 66 IYEGRVIQIVLM------RAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKV 117
Query: 395 HLAITVLEE 403
+++ E
Sbjct: 118 LMSVQYFLE 126
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSP-KWHEEFNIPISTWDSP 346
V + S+++ G AD K F ++ + E F P+++
Sbjct: 24 IVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78
Query: 347 N-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
N VL I++ + F + +G + + + + R ++ L + + ++++
Sbjct: 79 NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSM 134
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 777 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.95 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.95 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.8 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.8 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.78 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.78 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.77 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.77 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.77 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.77 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.76 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.76 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.76 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.76 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.75 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.75 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.75 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.74 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.74 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.73 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.73 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.73 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.73 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.73 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.72 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.72 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.71 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.71 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.7 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.63 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.63 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.55 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.55 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.54 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.49 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.48 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.46 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.42 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.35 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.28 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.02 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.02 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.9 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.85 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 98.45 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 98.43 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 98.29 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 98.12 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 97.43 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 97.2 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 97.15 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 97.09 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 97.08 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 97.0 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 96.91 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 96.8 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 96.74 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 96.63 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 96.59 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 96.54 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 96.44 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 96.04 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 95.69 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 95.69 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 95.48 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 95.06 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 93.26 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 92.96 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 91.63 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 90.98 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 90.18 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 88.63 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 87.78 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 87.53 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 87.19 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 86.5 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 86.4 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 85.62 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 85.07 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=257.50 Aligned_cols=234 Identities=24% Similarity=0.348 Sum_probs=188.7
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
+...+++.|....+.|+|+|++|++|+.+|.+|.+||||++++++ ++++|+++++|+||.|||+|.|.+...+ ...
T Consensus 6 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~ 85 (284)
T 2r83_A 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK 85 (284)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTC
T ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcC
Confidence 345789999999999999999999999999999999999999964 5889999999999999999999987532 246
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC------CCcEEEEEEEEEecCCCccc-----------
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAKQGV----------- 409 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~y~p~s~~lsv----------- 409 (777)
.|.|+|||+|.++ |++||++.++|.++..+.....|++|... ..|+|++.+.|.+....+.+
T Consensus 86 ~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~ 165 (284)
T 2r83_A 86 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165 (284)
T ss_dssp EEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred EEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCCCc
Confidence 8999999999986 99999999999999888888999999753 47999999999886655432
Q ss_pred -----cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC--ceee-ceE-Ee
Q 004037 410 -----DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH 480 (777)
Q Consensus 410 -----~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G--~ee~-gi~-v~ 480 (777)
.+||++..+.. +..+..++||.++++++||+|||.|.|..+.++.+.....+++.|.+. .++. |-. +.
T Consensus 166 d~~~~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~ 242 (284)
T 2r83_A 166 DVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 242 (284)
T ss_dssp STTSCCCEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEE
T ss_pred CCCCCcCeEEEEEEEe---CCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEEC
Confidence 34555544421 223446789999999999999999999887777666566788888763 4444 544 22
Q ss_pred --ccCcccccccccccCCCCcccceeeecCC
Q 004037 481 --QPGSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 481 --~pg~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
..+. ..+||.++...||++.++||..-.
T Consensus 243 l~~~~~-~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 243 YNSTGA-ELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp TTCCHH-HHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCCCc-HHHHHHHHHHCCCCchheeeecCC
Confidence 2222 349999999999999999998864
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-28 Score=256.80 Aligned_cols=235 Identities=21% Similarity=0.344 Sum_probs=186.4
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEe---CCeEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L---g~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...|++.|....+.|+|+|++|++|+.+|.+|.+||||++++ +.++++|+++++|+||.|||+|.|.+...+ ....
T Consensus 8 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 87 (296)
T 1dqv_A 8 RISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRK 87 (296)
T ss_dssp EEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCC
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCE
Confidence 457899999999999999999999999999999999999999 347899999999999999999999986432 2358
Q ss_pred EEEEEeecCCCC-CceeEEEEEe-CCcccC-CCccceeeeccCC-----CCcEEEEEEEEEecCCCccc-----------
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTIN-ISDLRD-GQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQGV----------- 409 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~-L~~L~~-~~~~~~W~~L~~~-----~~GeI~LsL~y~p~s~~lsv----------- 409 (777)
|.|+|||+|.++ |++||++.++ |..+.. ......|+.|... ..|+|++.++|.+....+.+
T Consensus 88 L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~ 167 (296)
T 1dqv_A 88 LHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAM 167 (296)
T ss_dssp CEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred EEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccceeEEEEEEeecCCcc
Confidence 999999999987 9999999996 544433 3446789999642 37999999999887665433
Q ss_pred -----cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC--Cceee-ceE---
Q 004037 410 -----DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GIW--- 478 (777)
Q Consensus 410 -----~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~-gi~--- 478 (777)
.++|++..+. .+..+..++||+++++++||+|||.|.|..+.+........+++.|.+ |.++. |..
T Consensus 168 d~~g~~Dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~ 244 (296)
T 1dqv_A 168 DLTGFSDPYVKASLI---SEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVG 244 (296)
T ss_dssp SSSSCCCEEEEECCC---TTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCS
T ss_pred CCCCCCCcEEEEEEE---eCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEEC
Confidence 3566666652 234456788999999999999999999988777666656678888876 44444 543
Q ss_pred EeccCcccccccccccCCCCcccceeeecCCC
Q 004037 479 VHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNG 510 (777)
Q Consensus 479 v~~pg~~v~~~w~~~~~~~r~~~~~~~~~~~~ 510 (777)
...-+....+||.++..+||++.++||..-..
T Consensus 245 l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 245 PEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp SCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred CccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 22223335599999999999999999998855
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=174.89 Aligned_cols=122 Identities=32% Similarity=0.487 Sum_probs=110.4
Q ss_pred eeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 277 sL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
++.|..+.|.|+|+|++|++|+.++..|.+||||++++++++++|+++++|+||.|||+|.|.+.. ....|.|+|||+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~i~V~d~ 82 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDE 82 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecC--CCCEEEEEEEEC
Confidence 467888999999999999999999999999999999999999999999999999999999999985 347899999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccC-----CCCcEEEEEEEEEe
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~y~p 402 (777)
|.++ |++||++.++|.++..+. ..|++|.+ ...|+|+|+++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 9986 999999999999997654 58999975 25799999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=170.10 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=108.4
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccC--CCCcEEEEEEeecCCCC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW--DSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~--e~~~~L~V~V~D~D~~~ 360 (777)
..|.|+|+|++|++|+.++. |.+||||+++++.++++|+++++++||.|||+|.|.+... +....|.|+|||+|.++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 56899999999999999998 9999999999999999999999999999999999998743 23578999999999986
Q ss_pred -CceeEEEEEeCCcccCCCccceeee---ccCC----CCcEEEEEEEEEecCC
Q 004037 361 -DDTLGDCTINISDLRDGQRHDMWIP---LQNI----KIGRLHLAITVLEESA 405 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~~~~W~~---L~~~----~~GeI~LsL~y~p~s~ 405 (777)
|++||++.++|.++..+...+.|+. |.+. ..|+|+|+++|.|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~ 136 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG 136 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence 8999999999999988887889988 6543 2599999999998654
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-20 Score=171.66 Aligned_cols=123 Identities=21% Similarity=0.320 Sum_probs=109.7
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcccceeeEecccCCCCcEEEEEEeecCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~-~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~ 359 (777)
..+.|.|+|+|++|++|+..+..|.+||||++++++++++|++++ +++||.|||+|.|.+.. ....|.|+|||+|.+
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVG 83 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSC
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCC
Confidence 347899999999999999999999999999999999999999998 89999999999999986 457899999999998
Q ss_pred C-CceeEEEEEeCCcc-cCCCccceeeeccC--CCCcEEEEEEEEEecCC
Q 004037 360 V-DDTLGDCTINISDL-RDGQRHDMWIPLQN--IKIGRLHLAITVLEESA 405 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L-~~~~~~~~W~~L~~--~~~GeI~LsL~y~p~s~ 405 (777)
+ |++||++.++|.++ ..+.....|++|.. ...|+|+|+++|.|...
T Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence 6 99999999999998 44555678999962 34799999999998764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=169.57 Aligned_cols=116 Identities=25% Similarity=0.426 Sum_probs=103.1
Q ss_pred eeEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecC
Q 004037 284 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~---D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
.|.|+|+|++|++|+.+ +..|.+||||++++++ ++++|+++++|+||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 47999999999999984 6678999999999985 789999999999999999999999643 3578999999999
Q ss_pred CCCCceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEE
Q 004037 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (777)
Q Consensus 358 ~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y 400 (777)
.++|++||++.++|.++..+.....|++|.+...|.|++++..
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~ 123 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence 9889999999999999998888899999998667777777654
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=170.93 Aligned_cols=120 Identities=30% Similarity=0.429 Sum_probs=99.2
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEe
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~ 354 (777)
....+.|+|+|++|++|+.++.+|.+||||++++++ ..++|+++++|+||.|||+|.|.+.. ....|.|+||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~l~~~V~ 93 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP--QQHRLLFEVF 93 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT--TTCEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC--CCCEEEEEEE
Confidence 456799999999999999999899999999999974 58899999999999999999999885 3468999999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCcc------ceeeeccCC-----CCcEEEEEEEEEe
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRH------DMWIPLQNI-----KIGRLHLAITVLE 402 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~------~~W~~L~~~-----~~GeI~LsL~y~p 402 (777)
|+|.++ |++||++.++|.++..+... ..|++|... ..|+|+|+++|.|
T Consensus 94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999986 99999999999998776532 589999652 4799999999975
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=177.42 Aligned_cols=115 Identities=26% Similarity=0.463 Sum_probs=101.9
Q ss_pred CceeEEEEEEEEecCCCCCCC----------CCCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEE
Q 004037 282 EPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~----------~G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~ 350 (777)
...|.|+|+|++|++|+++|. .|.+||||++++++++ .+|+++++|+||.|||+|.|.+.. ...|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CCEEE
Confidence 467999999999999998883 3679999999998854 799999999999999999999874 36899
Q ss_pred EEEeecCCCC-CceeEEEEEeCCcccCC----CccceeeeccCCCCcEEEEEEEEE
Q 004037 351 IEVRDKDHFV-DDTLGDCTINISDLRDG----QRHDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 351 V~V~D~D~~~-Dd~IG~v~I~L~~L~~~----~~~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
|+|||+|.++ |++||++.|+|.++..+ ...+.|++|+. .|+|+|+++|.
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence 9999999987 99999999999998754 56789999975 89999999873
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=167.87 Aligned_cols=115 Identities=32% Similarity=0.477 Sum_probs=103.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCC---
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~--- 359 (777)
..|.|+|+|++|++|+++|.+|.+||||+++++.++++|+++++|+||.|||+|.|.+... .+.|.|+|||+|.+
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCccc
Confidence 3699999999999999999999999999999999999999999999999999999999753 47899999999985
Q ss_pred ---------CCceeEEEEEeCCcccCCCccceeeeccCC-----CCcEEEEEEEEE
Q 004037 360 ---------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (777)
Q Consensus 360 ---------~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~y~ 401 (777)
+|++||++.++|.++. ...+.|++|... ..|+|+|+++|.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 4999999999999983 456799999842 479999999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-19 Score=167.74 Aligned_cols=117 Identities=26% Similarity=0.432 Sum_probs=102.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEeCCe-EEEeeeecCCCCCcccceeeEecccCCCCcEEE
Q 004037 283 PVAYARVEVVEASDMKPSDLNGL-----------ADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~-----------sDPYV~v~Lg~~-k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~ 350 (777)
..|.|+|+|++|++|+++|.++. +||||+++++.+ ..+|+++++|+||.|||+|.|.+.. .+.|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~---~~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecC---CCEEE
Confidence 36899999999999998885443 999999999885 4799999999999999999999875 27899
Q ss_pred EEEeecCCCC-CceeEEEEEeCCcccCCC--ccceeeeccCCCCcEEEEEEEEEecC
Q 004037 351 IEVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEES 404 (777)
Q Consensus 351 V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~--~~~~W~~L~~~~~GeI~LsL~y~p~s 404 (777)
|+|||+|.++ |++||++.++|.++..+. ..+.|++|+. .|+|+|+++|...+
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEecC
Confidence 9999999987 999999999999988753 3488999974 89999999997653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=167.23 Aligned_cols=115 Identities=21% Similarity=0.257 Sum_probs=99.7
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcccceeeEe-cccCC-CCcE
Q 004037 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SPNV 348 (777)
Q Consensus 276 fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-----g~~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~~~ 348 (777)
+.+.|+...+.|.|+|++|++|+. +.+|.+||||++++ ...+++|+++++|+||.|||+|.|. +...+ ....
T Consensus 11 ~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~ 89 (134)
T 2b3r_A 11 VKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRE 89 (134)
T ss_dssp EEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCE
T ss_pred EEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCE
Confidence 677888889999999999999997 77899999999999 3368899999999999999999998 66322 3468
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (777)
|.|+|||+|.++ +++||++.++|.++..+.....|++|.+...
T Consensus 90 L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 90 LQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred EEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 999999999987 8999999999999998888899999986543
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=172.01 Aligned_cols=121 Identities=28% Similarity=0.439 Sum_probs=99.5
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEe
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~ 354 (777)
....|.|+|+|++|++|+.++..|.+||||++++++ ++++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~L~~~V~ 81 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP--QRHRILFEVF 81 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT--TTCEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC--CCCEEEEEEE
Confidence 456899999999999999999999999999999975 67899999999999999999999985 3468999999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCcc-c-----eeeeccCC-----CCcEEEEEEEEEec
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRH-D-----MWIPLQNI-----KIGRLHLAITVLEE 403 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~-~-----~W~~L~~~-----~~GeI~LsL~y~p~ 403 (777)
|+|.++ |++||++.|+|.++..+... + .|++|... ..|+|+|+++|.|.
T Consensus 82 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred ECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 999986 99999999999999876433 2 79999752 37999999999987
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=174.45 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=102.2
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcccceeeEecccCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~ 345 (777)
...+++.|....+.|+|+|++|++|+++|.+|.+||||++++.+ .++||+++++|+||+|||+|.|.+...+ .
T Consensus 31 ~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~ 110 (155)
T 2z0u_A 31 RIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALH 110 (155)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhC
Confidence 45789999999999999999999999999999999999999965 3799999999999999999999987421 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccC-CCccceeeecc
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHDMWIPLQ 387 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~-~~~~~~W~~L~ 387 (777)
...|.|+|||+|.++ +++||++.++|.++.. +.....|++|.
T Consensus 111 ~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 111 QKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp HCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 358999999999987 9999999999999964 56678999986
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=165.16 Aligned_cols=118 Identities=27% Similarity=0.474 Sum_probs=104.4
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcccceeeEecccCC--CCc
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPN 347 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg---~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~~~ 347 (777)
...+++.|.+..+.|+|+|++|++|+.++.+|.+||||++++. .++++|+++++|+||.|||+|.|.+...+ ...
T Consensus 14 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 93 (141)
T 2d8k_A 14 RIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQR 93 (141)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTS
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccC
Confidence 4578899999999999999999999999999999999999995 36899999999999999999999853211 246
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
.|.|+|||+|.++ |++||++.++|.++..+.....|++|.+..
T Consensus 94 ~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 94 ILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 8999999999986 999999999999999888888999998643
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=168.06 Aligned_cols=116 Identities=29% Similarity=0.484 Sum_probs=104.4
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg---~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...+++.|.+..+.|+|+|++|++|+.++.++.+||||++++. .++++|+++++|+||.|||+|.|.+...+ ....
T Consensus 30 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 109 (152)
T 1rsy_A 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 109 (152)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCE
T ss_pred EEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCE
Confidence 4578999999999999999999999999999999999999994 36889999999999999999999886421 2468
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.|+|||+|.++ |++||++.++|.++..+...+.|++|.+
T Consensus 110 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 110 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 999999999986 9999999999999988888899999975
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-19 Score=166.05 Aligned_cols=116 Identities=29% Similarity=0.484 Sum_probs=104.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg---~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...+++.|....+.|+|+|++|++|+.++.++.+||||++++. .++++|+++++|+||.|||+|.|.+...+ ....
T Consensus 22 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~ 101 (143)
T 3f04_A 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 101 (143)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCE
T ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCE
Confidence 4568899999999999999999999999989999999999994 36899999999999999999999987422 2468
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.|+|||+|.++ |++||++.++|.++..+...+.|++|+.
T Consensus 102 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred EEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 999999999986 9999999999999998888899999974
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=161.66 Aligned_cols=114 Identities=24% Similarity=0.306 Sum_probs=96.8
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcccceeeEecccCC--C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-----g~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~ 345 (777)
...+++.|.+..+.|.|+|++|++|+.++.+|.+||||++++ +..+++|+++++|+||.|||+|.|.+...+ .
T Consensus 6 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 85 (129)
T 2bwq_A 6 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 85 (129)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGG
T ss_pred EEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhc
Confidence 346889999999999999999999999999999999999999 347899999999999999999999953211 2
Q ss_pred CcEEEEEEeecCCCC---CceeEEEEEeCCcccCCCccceeeecc
Q 004037 346 PNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
...|.|+|||+|.++ +++||++.++|.++.... .+.|++|+
T Consensus 86 ~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 86 ERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp GCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred CCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 468999999999986 899999999999987755 78999985
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=166.69 Aligned_cols=121 Identities=21% Similarity=0.351 Sum_probs=104.6
Q ss_pred CCCcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC
Q 004037 271 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (777)
Q Consensus 271 ~~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~ 345 (777)
.+...++|.|.+..+.|.|+|++|++|+..+ +|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+.
T Consensus 13 ~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~ 91 (153)
T 3fbk_A 13 QGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDD 91 (153)
T ss_dssp CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGT
T ss_pred CCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHh
Confidence 3456799999999999999999999999998 69999999999943 57999999999999999999999854334
Q ss_pred CcEEEEEEeecCCCC--CceeEEEEEeCCcccC-CCccceeeeccCCCCc
Q 004037 346 PNVLVIEVRDKDHFV--DDTLGDCTINISDLRD-GQRHDMWIPLQNIKIG 392 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~--Dd~IG~v~I~L~~L~~-~~~~~~W~~L~~~~~G 392 (777)
...|.|+|||+|.++ |++||++.++|.++.. +.....|++|.+...|
T Consensus 92 ~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g 141 (153)
T 3fbk_A 92 QKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG 141 (153)
T ss_dssp TSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred CCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence 457999999999974 8999999999999985 6678899999875544
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=163.09 Aligned_cols=119 Identities=24% Similarity=0.291 Sum_probs=103.4
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcccceeeEecccCC--C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e--~ 345 (777)
...+++.|.+..+.|+|+|++|++|+.++.+|.+||||++++. .++++|+++++|+||.|||+|.|.+...+ .
T Consensus 9 ~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~ 88 (141)
T 1v27_A 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFR 88 (141)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGG
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhc
Confidence 4568899999999999999999999999999999999999993 47899999999999999999999953221 2
Q ss_pred CcEEEEEEeecCCCC---CceeEEEEEeCCcccCCCccceeeeccCCCCc
Q 004037 346 PNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~G 392 (777)
...|.|+|||+|.++ +++||++.++|.++.... ...|++|.+...|
T Consensus 89 ~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g 137 (141)
T 1v27_A 89 ERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG 137 (141)
T ss_dssp TCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred CCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence 468999999999986 899999999999987654 7899999876554
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=162.14 Aligned_cols=114 Identities=20% Similarity=0.332 Sum_probs=100.5
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+|++.|....+.|+|+|++|+ ++|.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ...
T Consensus 14 ~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~ 90 (138)
T 1wfm_A 14 KLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTA 90 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTC
T ss_pred EEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCC
Confidence 45799999999999999999999 367889999999999943 4689999999999999999999987533 246
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
.|.|+|||+|.++ |++||++.++|.++..+.....|++|.+.
T Consensus 91 ~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 91 TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp EEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 8999999999987 99999999999999877778899999864
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-19 Score=167.54 Aligned_cols=118 Identities=23% Similarity=0.325 Sum_probs=104.8
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e- 344 (777)
+...+++.|.+..+.|.|+|++|++|+.++ .+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+
T Consensus 10 G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~ 89 (148)
T 3fdw_A 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLL 89 (148)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTG
T ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHh
Confidence 345789999999999999999999999988 689999999999964 4899999999999999999999987533
Q ss_pred CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 345 ~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
....|.|+|||+|.++ |++||++.++|.++..+.....|++|++.
T Consensus 90 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 90 AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred CceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 2457999999999986 89999999999999877778899999874
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=159.01 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=98.9
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~--~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
....|+|+|++|++|+++|.+|.+||||++++++ ++++|+++++|+||.|||+|.|.+... +.|.|+|||+|.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCC
Confidence 3468999999999999999999999999999975 889999999999999999999998753 35999999999875
Q ss_pred ----CceeEEEEEeCCcc-cCCCccceeeeccCC-------CCcEEEEEEEE
Q 004037 361 ----DDTLGDCTINISDL-RDGQRHDMWIPLQNI-------KIGRLHLAITV 400 (777)
Q Consensus 361 ----Dd~IG~v~I~L~~L-~~~~~~~~W~~L~~~-------~~GeI~LsL~y 400 (777)
|++||++.++|..+ ........|++|... ..|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 79999999999988 333344588888653 28999999875
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=162.61 Aligned_cols=116 Identities=34% Similarity=0.532 Sum_probs=103.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEe-cccCCC-
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTWDS- 345 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~-V~~~e~- 345 (777)
...+++.|.+..+.|.|+|++|++|+.++.+|.+||||++++.+ .+++|+++++|+||.|||+|.|. +...+.
T Consensus 17 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 96 (142)
T 2chd_A 17 ALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQ 96 (142)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHH
T ss_pred eEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHcc
Confidence 35688999999999999999999999999999999999999975 78999999999999999999998 543111
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
...|.|+|||+|.++ |++||++.++|.++..+.....|++|+.
T Consensus 97 ~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 97 RKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp HCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred CCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 258999999999987 8999999999999998888889999874
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-18 Score=166.56 Aligned_cols=118 Identities=31% Similarity=0.508 Sum_probs=101.3
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcE
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~ 348 (777)
..+++.| ..+.|+|+|++|++|+.++..+.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+....
T Consensus 22 l~~~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~ 99 (149)
T 1a25_A 22 IYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99 (149)
T ss_dssp EEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCE
T ss_pred EEEEEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCE
Confidence 4466666 4688999999999999999999999999999963 68999999999999999999999875333468
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEE
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (777)
|.|+|||+|.++ |++||++.++|.++..+ ..+.|++|.+.+.|++
T Consensus 100 L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 100 LSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred EEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence 999999999986 99999999999999876 4789999987555543
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-18 Score=161.70 Aligned_cols=117 Identities=25% Similarity=0.351 Sum_probs=101.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCC-CCC------CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEeccc
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPS-DLN------GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIST 342 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~-D~~------G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~ 342 (777)
...+++.|.+..+.|.|+|++|++|+.. +.+ +.+||||++++.+ ++++|+++++|+||.|||+|.|.+..
T Consensus 14 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (147)
T 2enp_A 14 MLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPF 93 (147)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCH
T ss_pred EEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeCh
Confidence 4578999999999999999999999984 443 5899999999964 68899999999999999999999864
Q ss_pred CC-CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 343 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 343 ~e-~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
.+ ....|.|+|||+|.++ +++||++.++|.++........|+.|...
T Consensus 94 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 94 LEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp HHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred HHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 22 1358999999999987 89999999999999887777889999864
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-18 Score=160.97 Aligned_cols=116 Identities=21% Similarity=0.326 Sum_probs=101.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|++|+.++.+| +||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 12 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 90 (142)
T 2dmg_A 12 QIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQR 90 (142)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHH
T ss_pred eEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCc
Confidence 45688999999999999999999999999889 99999999943 6889999999999999999999986321 12
Q ss_pred cEEEEEEeecCCCC---CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 347 NVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 347 ~~L~V~V~D~D~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
..|.|+|||+|.++ +++||++.++|..+..+.....|++|.+.
T Consensus 91 ~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 91 RTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp CEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred CEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 48999999999874 46999999999999887778899999864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=164.57 Aligned_cols=116 Identities=28% Similarity=0.474 Sum_probs=99.8
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe--------------EEEeeeecCCCCCcccceeeE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY--------------RFRTKTQRKTLSPKWHEEFNI 338 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~--------------k~kTkVi~~TlnP~WnEtF~f 338 (777)
...+++.|. .+.|+|+|++|++|+++|.+|.+||||++++++. +++|+++++|+||.|||+|.|
T Consensus 8 ~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f 85 (142)
T 1rh8_A 8 EIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIY 85 (142)
T ss_dssp EEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEE
T ss_pred EEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEE
Confidence 345778887 6899999999999999999999999999999762 579999999999999999999
Q ss_pred e-cccCC-CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 339 P-ISTWD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 339 ~-V~~~e-~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
. +...+ ....|.|+|||+|.++ +++||++.++|.++..+.....|++|.+..
T Consensus 86 ~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 86 KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140 (142)
T ss_dssp CSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred CCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence 7 54211 3468999999999986 899999999999998777788999998643
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=157.31 Aligned_cols=117 Identities=25% Similarity=0.312 Sum_probs=101.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEe-cccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~-G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|++|+.+|.+ +.+||||++++.+ ++++|+++++|+||.|||+|.|. +...+ ..
T Consensus 10 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~ 89 (138)
T 1ugk_A 10 TLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQE 89 (138)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGG
T ss_pred EEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhcc
Confidence 4568899999999999999999999999985 8999999999964 79999999999999999999995 65322 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCc-cceeeeccCC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR-HDMWIPLQNI 389 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~-~~~W~~L~~~ 389 (777)
..|.|+|||+|.++ |++||++.++|.++..+.. ...|++|...
T Consensus 90 ~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 90 LALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp CEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 58999999999986 8999999999999987644 4567998764
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=164.11 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=99.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~-~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~ 346 (777)
...+++.| ..+.|.|+|++|++|+.+|. +|.+||||++++.+ .+++|+++++|+||+|||+|.|.+.. ..
T Consensus 20 ~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~ 95 (171)
T 2q3x_A 20 DIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP--QG 95 (171)
T ss_dssp EEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC--TT
T ss_pred EEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC--CC
Confidence 45677777 68999999999999999995 79999999999964 38899999999999999999999864 35
Q ss_pred cEEEEEEe-ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 347 NVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 347 ~~L~V~V~-D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
..|.|+|| |+|.++ |++||++.++|.++..+...+.|++|...
T Consensus 96 ~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 96 KVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 78999999 999987 89999999999999887788999999863
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=159.06 Aligned_cols=116 Identities=26% Similarity=0.399 Sum_probs=99.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 13 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 92 (159)
T 1tjx_A 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 92 (159)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred eEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCC
Confidence 45788999999999999999999999999999999999999953 4789999999999999999999987432 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcc------------cCCCccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDL------------RDGQRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L------------~~~~~~~~W~~L~~ 388 (777)
..|.|+|||+|.++ |++||++.++|..+ ..+.....|++|.+
T Consensus 93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred cEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 57999999999987 99999999999954 22344567888865
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=155.09 Aligned_cols=114 Identities=25% Similarity=0.382 Sum_probs=96.2
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|++|+..+.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 4 ~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~ 83 (138)
T 3n5a_A 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRE 83 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCc
Confidence 34678999999999999999999999999999999999999964 5889999999999999999999987532 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
..|.|+|||+|.++ |++||++.++|.++. .....|++|..
T Consensus 84 ~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~ 124 (138)
T 3n5a_A 84 TTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIA 124 (138)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHH
T ss_pred eEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHh
Confidence 57999999999986 999999999999643 22345655543
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=164.16 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=100.5
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
...+.|+|+|++|++|+..+..+.+||||++++++++++|+++++|+||.|||+|.|.+.. ...|.|+|||+|.++
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~~~~ 109 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKS 109 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSC
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCCCCC
Confidence 3568999999999999944334459999999999999999999999999999999999853 578999999999986
Q ss_pred CceeEEEEEeCCcccCCC-----ccceeeeccCC-----CCcEEEEEEEEEec
Q 004037 361 DDTLGDCTINISDLRDGQ-----RHDMWIPLQNI-----KIGRLHLAITVLEE 403 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~~-----~~~~W~~L~~~-----~~GeI~LsL~y~p~ 403 (777)
|++||++.++|.++..+. ....|++|... ..|+|++.++|++.
T Consensus 110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 899999999999886432 12579999753 37999999999865
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.4e-17 Score=158.86 Aligned_cols=116 Identities=29% Similarity=0.408 Sum_probs=99.3
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|++|+.++.+|.+||||++++++ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 25 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 104 (166)
T 2cm5_A 25 KILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAK 104 (166)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred eEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCC
Confidence 45688999999999999999999999999999999999999975 6899999999999999999999987422 24
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (777)
..|.|+|||+|.++ +++||++.++|..+. .....|++|...+
T Consensus 105 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~ 147 (166)
T 2cm5_A 105 KSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNK 147 (166)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCT
T ss_pred CEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCC
Confidence 58999999999986 899999999999753 2345676665433
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=158.19 Aligned_cols=114 Identities=21% Similarity=0.284 Sum_probs=92.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C---eEEEeeeecCCCCCcccceeeEecccCCC-C
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG--P---YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg--~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~ 346 (777)
...+++.|.+..+.|.|+|++|++|+.++.+|.+||||++++. . .+++|+++++|+||.|||+|.|.+...+. .
T Consensus 18 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 97 (153)
T 1w15_A 18 ELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEE 97 (153)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTT
T ss_pred EEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCc
Confidence 3568899999999999999999999999999999999999994 3 27899999999999999999999875332 3
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
..|.|+|||+|.++ +++||++.++|.. .+.....|+.|..
T Consensus 98 ~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 98 ISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp EEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred eEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 68999999999986 9999999999997 3334566777654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.63 E-value=7.4e-16 Score=174.96 Aligned_cols=119 Identities=27% Similarity=0.491 Sum_probs=106.6
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
...|.|+|+|++|++|+++|.+|.+||||++++++++++|+++++|+||.|||+|.|.+... ....|.|+|||+|.++
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~~~~ 462 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQFSP 462 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCSSSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999998753 3468999999999987
Q ss_pred CceeEEEEEeCCcccCCCc----cceeeeccCCCCcEEEEEEEEE
Q 004037 361 DDTLGDCTINISDLRDGQR----HDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~~~----~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
|++||++.++|.++..+.. ...|++|.+...|+|++++.+.
T Consensus 463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 9999999999999876543 6789999998999999998764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=168.71 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=126.3
Q ss_pred Cc-eeEEEEeecccCCCccc-cCcchHHHHHHHHHHHhhhcccC-----C--ceeEeccccc-----CCCC---CCccee
Q 004037 215 PP-YFQMTVKPIFTHGLDVT-EFPGIAGWLDKLLSIAFEQTLVE-----P--NMLVVDVDKF-----ASPQ---PGNWFS 277 (777)
Q Consensus 215 ~P-~idf~lkpl~~~G~dV~-~iPGLs~~I~~~I~~~l~~~LV~-----P--n~~~Idl~k~-----~s~~---~~~~fs 277 (777)
.| .|++.+.||- ++. ..+--...++..|.+++.+.-.. | |.... +... ..+. ....
T Consensus 314 ~P~~I~~~l~PI~----~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~-l~g~~C~C~C~~~~~t~~~~-- 386 (540)
T 3nsj_A 314 NPGLVDYSLEPLH----TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHK-SSHDSCQCECQDSKVTNQDC-- 386 (540)
T ss_dssp SCEEEEEEEEEGG----GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEE-CSSCTTCEEESCTTTBCGGG--
T ss_pred CCceEEEEEEEHH----HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCcc-CCCCceEeeCCCCCCccccc--
Confidence 45 5999999982 222 13455667888888888776443 3 22111 2100 0000 0000
Q ss_pred eeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecC
Q 004037 278 VDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 278 L~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
..-....|.|+|+|++|++|+. |.+|.+||||+|+++.++++|+++++|+||+|||+|.|.+......+.|.|+|||+|
T Consensus 387 C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D 465 (540)
T 3nsj_A 387 CPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD 465 (540)
T ss_dssp CBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred ccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence 1112347899999999999998 999999999999999999999999999999999999998654334678999999999
Q ss_pred CCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEE
Q 004037 358 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 358 ~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
.++ ||+||++.++|.. ..++.|++|. .|.|++++++.
T Consensus 466 ~~~~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~ 503 (540)
T 3nsj_A 466 YGWDDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAK 503 (540)
T ss_dssp SSSCCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEE
Confidence 986 8999999999982 3467899875 69999998844
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=138.76 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=102.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcccceeeEeccc-CCCCcEEEEEEeecCCCC
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPIST-WDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~-~TlnP~WnEtF~f~V~~-~e~~~~L~V~V~D~D~~~ 360 (777)
..-.|+|+|.+|.+|+ |++|||+++.+...+++|++++ +++||+|||.|+|++.. .+....|.|.|||++.++
T Consensus 19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~ 93 (144)
T 3l9b_A 19 SHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF 93 (144)
T ss_dssp CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred CcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence 3567999999999998 6899999999999999999998 69999999999999874 345679999999999986
Q ss_pred -CceeEEEEEeCCcccCCCccceeeeccCCC----CcEEEEEEEEEecCC
Q 004037 361 -DDTLGDCTINISDLRDGQRHDMWIPLQNIK----IGRLHLAITVLEESA 405 (777)
Q Consensus 361 -Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~----~GeI~LsL~y~p~s~ 405 (777)
+++||++.++|.++...+....+-+|.+.+ .++|.|.++|.|.++
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence 999999999999998877766677776533 589999999998654
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=151.16 Aligned_cols=115 Identities=26% Similarity=0.393 Sum_probs=96.8
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..+++.|.+..+.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+. ..
T Consensus 139 i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 218 (284)
T 2r83_A 139 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKV 218 (284)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGE
T ss_pred EEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCce
Confidence 3567788888999999999999999999999999999999843 57899999999999999999999875332 34
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCccc------------CCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~------------~~~~~~~W~~L~~ 388 (777)
.|.|+|||+|.++ +++||++.++|..+. .+....+|++|.+
T Consensus 219 ~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 219 QVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred EEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 7999999999987 999999999998632 2334567888875
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=136.04 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=72.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~-~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
..+.|+|+|++|++|+. +|.+||||+++ .+..+|+++. +|+||.|||+|.|.+.. ....|.|+|||+| ++
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~ 74 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIW 74 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECC--CSSEEEEEEEECC-SSC
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeC--CCCeEEEEEEECC-CCC
Confidence 45899999999998853 68899999999 3444566654 79999999999999985 3457999999999 65
Q ss_pred CceeEEEEEeCCcccCC
Q 004037 361 DDTLGDCTINISDLRDG 377 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~ 377 (777)
|++||++.|+|.++...
T Consensus 75 dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 75 DTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEEEGGGSCBC
T ss_pred CCeEEEEEEEHHHhhhc
Confidence 99999999999998654
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-14 Score=137.47 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=73.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~-~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
..+.|+|+|++|++|+ .+|.+||||+++ .+.++|++++ +++||.|||+|.|.+.. ....|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~ 83 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIW 83 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCC--TTSEEEEEEEECC-SSC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeC--CCCEEEEEEEECC-CCC
Confidence 4689999999999884 368899999999 3455677765 69999999999999985 3457999999999 65
Q ss_pred CceeEEEEEeCCcccCC
Q 004037 361 DDTLGDCTINISDLRDG 377 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~ 377 (777)
|++||++.|+|.++...
T Consensus 84 dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 84 DTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CEEEEEEEEEGGGSCBC
T ss_pred CceEEEEEEEHHHhccc
Confidence 99999999999998653
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-14 Score=153.19 Aligned_cols=103 Identities=26% Similarity=0.403 Sum_probs=90.5
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..|.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+.... ..
T Consensus 140 ~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 219 (296)
T 1dqv_A 140 ELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVEN 219 (296)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGS
T ss_pred eEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccC
Confidence 34678889889999999999999999999999999999999962 5789999999999999999999987532 13
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCccc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLR 375 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~ 375 (777)
..|.|+|||+|.++ |++||.+.++|..+.
T Consensus 220 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 220 VGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp CCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred cEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence 47999999999987 999999999999763
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8.4e-14 Score=164.96 Aligned_cols=112 Identities=25% Similarity=0.431 Sum_probs=99.5
Q ss_pred CceeEEEEEEEEecCCCC---CCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEee
Q 004037 282 EPVAYARVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~---~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D 355 (777)
.+.+.|+|+|++|++|+. +|..|.+||||++++++ .+++|+++++|+||+|||+|.|.+... ....|.|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEE
Confidence 467999999999999998 88889999999999984 689999999999999999999999853 35689999999
Q ss_pred cCCCCCceeEEEEEeCCcccCCCccceeeeccCCCCcEEEE
Q 004037 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396 (777)
Q Consensus 356 ~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~L 396 (777)
+|.++|++||++.++|.++..+.....|++|... +++.+
T Consensus 94 ~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 94 ANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp CCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred CCCCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence 9998899999999999999888888999999853 44443
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.4e-13 Score=156.09 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=97.8
Q ss_pred ceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCC-CCCcccceeeEecccCCCCcEEEEEEe
Q 004037 283 PVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVR 354 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D~--~G~sDPYV~v~Lg~-----~k~kTkVi~~T-lnP~WnEtF~f~V~~~e~~~~L~V~V~ 354 (777)
..+.|+|+|++|++|+..+. ++.+||||++.+.+ .++||++++++ +||+|||+|.|.+...+ ...|+|.||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e-l~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-LALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG-GCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC-CCEEEEEEE
Confidence 56899999999999998873 78999999999943 68999999997 99999999999987533 358999999
Q ss_pred ecCCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEE
Q 004037 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (777)
Q Consensus 355 D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~ 401 (777)
|+|.++ |++||++.++|..|..+. .|++|.+.. .|.|++++.|.
T Consensus 574 D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 999986 999999999999998754 588886632 46788887764
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-13 Score=157.71 Aligned_cols=114 Identities=17% Similarity=0.215 Sum_probs=21.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCC---CCCcccceeeEecccCCCCcEEEEEEeec-CC
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKT---LSPKWHEEFNIPISTWDSPNVLVIEVRDK-DH 358 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~-k~kTkVi~~T---lnP~WnEtF~f~V~~~e~~~~L~V~V~D~-D~ 358 (777)
.+.|+|+|++|++|+++| ||||+++++++ ..||+++++| +||.|||+|.|.+.+. ...|.|+|||. |.
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~ 82 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDK 82 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCc
Confidence 578999999999999876 99999999874 6799999999 9999999999987542 47899999994 52
Q ss_pred ---C-CCceeEEEEEeCCcccCCCccceeeeccCC---------------------------CCcEEEEEEEEEecC
Q 004037 359 ---F-VDDTLGDCTINISDLRDGQRHDMWIPLQNI---------------------------KIGRLHLAITVLEES 404 (777)
Q Consensus 359 ---~-~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~---------------------------~~GeI~LsL~y~p~s 404 (777)
. +|++||++.|++.++..+...+.|++|.+. ..|.|+|++.|.+..
T Consensus 83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~ 159 (483)
T 3bxj_A 83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159 (483)
T ss_dssp ------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence 4 499999999999999988788999999431 258899999987754
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-12 Score=149.73 Aligned_cols=112 Identities=32% Similarity=0.495 Sum_probs=97.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEee
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg-----~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D 355 (777)
....+.|.|+|++|++|+++|.+|.+||||++++. ..+.+|+++++|+||.|||+|.|.+...+....|.|+|||
T Consensus 168 ~~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d 247 (674)
T 3pfq_A 168 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWD 247 (674)
T ss_dssp EECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEE
T ss_pred eeccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEee
Confidence 34568999999999999999999999999999993 3688999999999999999999998865556689999999
Q ss_pred cCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCcE
Q 004037 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393 (777)
Q Consensus 356 ~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~Ge 393 (777)
+|.++ |++||.+.++|.++.... ...|+.|.+...|+
T Consensus 248 ~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g~ 285 (674)
T 3pfq_A 248 WDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE 285 (674)
T ss_dssp CCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGGG
T ss_pred cccccccccccccccchhhhccCC-cccceeecccccce
Confidence 99987 999999999999987755 48899997755443
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.2e-10 Score=134.65 Aligned_cols=109 Identities=20% Similarity=0.331 Sum_probs=88.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecC-CCCCcccc-eeeEe-cccCCCCcEEEEEEee
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRK-TLSPKWHE-EFNIP-ISTWDSPNVLVIEVRD 355 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTkVi~~-TlnP~WnE-tF~f~-V~~~e~~~~L~V~V~D 355 (777)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ ++||+||| +|.|. +...+ ...|+|+|||
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe-la~Lrf~V~D 799 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-LASLRIAAFE 799 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG-GCEEEEEEEE
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC-cCEEEEEEEc
Confidence 4799999999999853 689999999953 3589999976 59999999 69998 65332 3479999999
Q ss_pred cCCCCCceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEEecC
Q 004037 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEES 404 (777)
Q Consensus 356 ~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~p~s 404 (777)
+| +++||++.+||..|..+. .+++|.+.. .|.|.+.+.+.+..
T Consensus 800 ~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l~~atLfv~i~~~~~~ 847 (885)
T 3ohm_B 800 EG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPLCLPALLIYTEASDYI 847 (885)
T ss_dssp TT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred CC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCccCceEEEEEEEEEecC
Confidence 87 899999999999998865 357776532 57899999887543
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=133.00 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=84.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEee-eec-CCCCCcccc-eeeE-ecccCCCCcEEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTK-TQR-KTLSPKWHE-EFNI-PISTWDSPNVLVIEV 353 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~------~k~kTk-Vi~-~TlnP~WnE-tF~f-~V~~~e~~~~L~V~V 353 (777)
.+.|.|+|++|++|+. +.+||||++.+.+ +++||+ +++ +++||+||| +|.| .+...+ -..|+|.|
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e-l~~Lr~~V 751 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVAV 751 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC-ccEEEEEE
Confidence 5789999999999985 4689999999932 468999 776 469999999 6999 776433 34899999
Q ss_pred eecCCCCCceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEE
Q 004037 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (777)
Q Consensus 354 ~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~ 401 (777)
||+| +++||++.+||..|..+. .|++|.+.. .+.|.+.+.+.
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCCceEEEEEEEEE
Confidence 9987 899999999999998764 467776532 35666666553
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=131.02 Aligned_cols=110 Identities=17% Similarity=0.316 Sum_probs=89.3
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecC-CCCCcccce-eeEe-cccCCCCcEEEEEE
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRK-TLSPKWHEE-FNIP-ISTWDSPNVLVIEV 353 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-------~k~kTkVi~~-TlnP~WnEt-F~f~-V~~~e~~~~L~V~V 353 (777)
.+.|+|+|++|++|+.. .+||||++.+.+ ++++|+++++ ++||+|||+ |.|. +...+ -..|+|.|
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe-la~Lrf~V 723 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD-LAVVRIIV 723 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG-GCEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC-ccEEEEEE
Confidence 37899999999999853 689999999954 5789999886 699999998 9998 65433 35899999
Q ss_pred eecCCCCCceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEEecC
Q 004037 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEES 404 (777)
Q Consensus 354 ~D~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~p~s 404 (777)
||++ +++||++.+||..|..+. .+++|.+.. .+.|.+.+.+....
T Consensus 724 ~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 724 SEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp EETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred EecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCCCceEEEEEEEEEecC
Confidence 9985 899999999999999875 457776532 47888888877543
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-08 Score=94.69 Aligned_cols=110 Identities=15% Similarity=0.342 Sum_probs=86.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe----EEEe-eeecCCCCCcccceeeEecccCCCCcEEEEEEeecCC
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY----RFRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~----k~kT-kVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~ 358 (777)
...|+|.+.++.--+-+......||||.+.+... ..+| ...++|..|.|||+|.-.+.+ .+.|.|.|++...
T Consensus 5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~ 81 (126)
T 1yrk_A 5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE 81 (126)
T ss_dssp CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT---TCEEEEEEEEETT
T ss_pred CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC---CEEEEEEEEcCCC
Confidence 4578888877653222223346899999999752 2365 667789999999999999985 5789999997554
Q ss_pred CCCceeEEEEEeCCccc-----CCCccceeeeccCCCCcEEEEEEEEE
Q 004037 359 FVDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVL 401 (777)
Q Consensus 359 ~~Dd~IG~v~I~L~~L~-----~~~~~~~W~~L~~~~~GeI~LsL~y~ 401 (777)
+++..|+|++.+|. .+...+.|++|++ .|+|++.+.|.
T Consensus 82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF 124 (126)
T ss_dssp ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence 99999999999987 3455689999985 99999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=95.31 Aligned_cols=112 Identities=18% Similarity=0.374 Sum_probs=88.6
Q ss_pred ceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe----EEEe-eeecCCCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 283 PVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGPY----RFRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 283 ~~G~L~VtVieAk~L~~~D-~~G~sDPYV~v~Lg~~----k~kT-kVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
..+.|+|.+.++.-.+.+. .....||||.+.+... ..+| ...++|..|.|||+|.-.+.+ .+.|.|.|++.
T Consensus 8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~ 84 (138)
T 2enj_A 8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK---GRVMQIIVKGK 84 (138)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS---SCEEEEEEECS
T ss_pred cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC---CeEEEEEEEcC
Confidence 3568889887776433222 2346899999999752 3677 667789999999999999885 57899999965
Q ss_pred CCCCCceeEEEEEeCCccc-----CCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 357 DHFVDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 357 D~~~Dd~IG~v~I~L~~L~-----~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
.. +++..|+|++.+|. .+...+.|++|++ .|+|++.+.|.-
T Consensus 85 a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~~ 130 (138)
T 2enj_A 85 NV---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYFL 130 (138)
T ss_dssp SC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred CC---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEEE
Confidence 44 99999999999987 3456789999985 999999999863
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-08 Score=90.43 Aligned_cols=114 Identities=13% Similarity=0.129 Sum_probs=79.1
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|++++.|.+....+.+ .++|++..+.. ...+..++||+++++++||+|||.|.|..+.
T Consensus 2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~ 78 (138)
T 3n5a_A 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMY---KDKRVEKKKTVTKKRNLNPIFNESFAFDIPT 78 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEE---TTEEEEEEECCCCSSCSSCEEEEEEEEECCG
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEe---CCCccceEeCccccCCCCCcCcceEEEECCh
Confidence 5888888888776655433 34555544421 1223457899999999999999999988876
Q ss_pred CCCcCcccceeeeecCC--ceee-ceE-Ee-ccCcccccccccccCCCCcccceeeec
Q 004037 455 EKSPKVADNFEPINIEG--QQET-GIW-VH-QPGSEVAQTWEPRKGKNRRLDTLVRRV 507 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G--~ee~-gi~-v~-~pg~~v~~~w~~~~~~~r~~~~~~~~~ 507 (777)
.........+++.|.+. .++. |-. +. .......+||.++..+|+++.++||..
T Consensus 79 ~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L 136 (138)
T 3n5a_A 79 EKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQL 136 (138)
T ss_dssp GGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hhcCceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeec
Confidence 66555556688888774 3443 443 22 123344599999999999999999975
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=98.43 E-value=5.5e-08 Score=92.80 Aligned_cols=116 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .++|++..+.. +..+..++||.++++++||+|||.|.|..+
T Consensus 15 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 91 (153)
T 1w15_A 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH---AKKRISKKKTHVKKCTPNAVFNELFVFDIP 91 (153)
T ss_dssp -CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEE---TTEEEEEEECCCCCSCSSEEEEEEEEEECC
T ss_pred cccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEe---CCeEeceEecCcccCCCCCeecceEEEECC
Confidence 36888888888776555432 35566555521 223344679999999999999999999887
Q ss_pred CCCCcCcccceeeeecCC--ceee-ceE-E--eccCcccccccccccCCCCcccceeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG--QQET-GIW-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G--~ee~-gi~-v--~~pg~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
..+.......+++.|.+. .++. |-. + ...+ ...+||.++..+|++++++||..-+
T Consensus 92 ~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~-~~~~~W~~l~~~p~~~~~~Wh~L~~ 152 (153)
T 1w15_A 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEG-SGGGHWKEICDFPRRQIAKWHMLCD 152 (153)
T ss_dssp SSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCS-HHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred HHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCc-hHHHHHHHHHhCCCCeeeecccccc
Confidence 766655566788888773 3443 443 2 1222 3448999999999999999998653
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-07 Score=91.22 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .++|++..+.. +..+..++||.++++++||+|||.|.|..+
T Consensus 10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 86 (159)
T 1tjx_A 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86 (159)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEEEEEEEECC
T ss_pred cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEe---CCceeceeeCceecCCCCCcccceEEEEcC
Confidence 36888888888776655432 35555544421 122345689999999999999999998887
Q ss_pred CCCCcCcccceeeeecCC--ceee-ceE-Ee--ccCcccccccccccCCCCcccceeeecCCC
Q 004037 454 SEKSPKVADNFEPINIEG--QQET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRVPNG 510 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G--~ee~-gi~-v~--~pg~~v~~~w~~~~~~~r~~~~~~~~~~~~ 510 (777)
..+.......+++.|.+. .++. |-. +. ..| ...+||.++...++.+.++||..-..
T Consensus 87 ~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~-~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG-AELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH-HHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred HHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCC-cHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 666555556688888774 3333 543 22 222 23499999999999999999987643
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-06 Score=85.11 Aligned_cols=117 Identities=11% Similarity=0.096 Sum_probs=79.6
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .+||++..+.. ...+..++||.+.++++||+|||.|.|..+
T Consensus 22 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 98 (166)
T 2cm5_A 22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP---DMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98 (166)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEET---C---CCEEECCCCCSCSSCEEEEEEEEECC
T ss_pred ccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEEC---CCCccceEeCCcccCCCCCcccceEEEEcc
Confidence 46888888888776554432 35565555421 112245789999999999999999998886
Q ss_pred CCCCcCcccceeeeecCC--ceee-ceE-Eec-cCcccccccccccCCCCcccceeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG--QQET-GIW-VHQ-PGSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G--~ee~-gi~-v~~-pg~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
..........+++.|.+. .++. |-. +.. .-....+||-++..+++.+.++||..-.
T Consensus 99 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~ 159 (166)
T 2cm5_A 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159 (166)
T ss_dssp GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred hHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence 665555556688888774 3444 544 221 1123448999999999999999998763
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00017 Score=67.57 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=52.7
Q ss_pred CcEEEEEEEEEecCCCcc-------------ccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCC
Q 004037 391 IGRLHLAITVLEESAKQG-------------VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS 457 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~ls-------------v~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~ 457 (777)
.|+|++++.|......+. ..+||++..+... .+..++||+++++++||+|||.|.|..+..+.
T Consensus 12 ~G~l~~sl~y~~~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~~~----~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l 87 (138)
T 1wfm_A 12 APKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANR----TGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEECCCCSSCCCEEEEEEEEET----TEEEEEECCCCCCCSSEECSSCEEEECCTTSS
T ss_pred ceEEEEEEEEeCCCCEEEEEEEEEEcCCCCCCcceEEEEEEEcC----CCcccEecccCcCCCCCcCCceEEEEecHHHc
Confidence 567777777665444332 2567776665210 11235789999999999999999998877766
Q ss_pred cCcccceeeeecCC
Q 004037 458 PKVADNFEPINIEG 471 (777)
Q Consensus 458 ~kv~~~~e~id~~G 471 (777)
......+++.|.+.
T Consensus 88 ~~~~L~~~V~d~d~ 101 (138)
T 1wfm_A 88 PTATLTLTLRTCDR 101 (138)
T ss_dssp TTCEEEEEEEECCS
T ss_pred CCCEEEEEEEECCC
Confidence 65566788888774
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00044 Score=64.25 Aligned_cols=80 Identities=6% Similarity=-0.057 Sum_probs=53.6
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV- 452 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~- 452 (777)
..|+|++++.|.+....+.+ .+||++..+.. ......++||.+.++++||+|||.|.|..
T Consensus 6 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~~~~~t~nP~wne~f~f~~~ 82 (141)
T 1v27_A 6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLP---DRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82 (141)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSS---CCSSSSCCBCCCCSSCSSCCCCCCCEECSC
T ss_pred cccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEec---CCCCCcceeCccccCCCCCccccEEEEccC
Confidence 46788888887765544332 35666655521 11235578999999999999999999884
Q ss_pred CCCCCcCcccceeeeecCCc
Q 004037 453 SSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~G~ 472 (777)
+.++.......+++.|.+..
T Consensus 83 ~~~~~~~~~l~i~V~d~d~~ 102 (141)
T 1v27_A 83 HRREFRERMLEITLWDQARV 102 (141)
T ss_dssp CTTGGGTCEEEEEEEEBCSS
T ss_pred CHHHhcCCEEEEEEEECCCC
Confidence 54554445556888887743
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00029 Score=67.04 Aligned_cols=107 Identities=11% Similarity=-0.041 Sum_probs=66.9
Q ss_pred CCcEEEEEEEEEecCCCccc---------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 390 KIGRLHLAITVLEESAKQGV---------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv---------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
..|+++|+|+|.+....+.+ .+||++..+.. ......++||.++++++||+|||.|.|..+.
T Consensus 12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 88 (153)
T 3fbk_A 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIP---EDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88 (153)
T ss_dssp -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEES---CSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEc---CCCCccEEeccccCCCCCCccccEEEEeccc
Confidence 47888888888887666543 34555554421 1223466899999999999999999888765
Q ss_pred CCCcCcccceeeeecCCc---eee-ceEEeccCcccccccccccCCCCcccceeeecCC
Q 004037 455 EKSPKVADNFEPINIEGQ---QET-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G~---ee~-gi~v~~pg~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
...... ..+++.|.+.. ++. |- +..|-.++ ..+....++|+...+
T Consensus 89 ~~~~~~-L~i~V~d~d~~~~~d~~lG~-~~i~l~~l--------~~~~~~~~~W~~L~~ 137 (153)
T 3fbk_A 89 EDDQKR-LLVTVWNRASQSRQSGLIGC-MSFGVKSL--------LTPDKEISGWYYLLG 137 (153)
T ss_dssp GGTTSE-EEEEEEECCSSGGGCEEEEE-EEEEHHHH--------TC--CCEEEEEECBC
T ss_pred HHhCCE-EEEEEEeCCCCCCCCcEEEE-EEEEHHHh--------cCCCCccccEEECCC
Confidence 555443 56788887743 333 33 33333333 223456678887764
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=66.92 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=53.5
Q ss_pred CCcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc
Q 004037 390 KIGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 452 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~ 452 (777)
..|+|++++.|.+....+.+ .+||++..+. .+.....++||.++++++||+|||.|.|..
T Consensus 8 ~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v 84 (148)
T 3fdw_A 8 VTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLL---PDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84 (148)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEE---TCCSGGGEEECCCCSSCSSCEEEEEEEEEC
T ss_pred cceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEE---cCCcccCccccccCCCCCCCcEeeEEEEEe
Confidence 36788888887765554332 3455555442 122234578999999999999999999888
Q ss_pred CCCCCcCcccceeeeecCC
Q 004037 453 SSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~G 471 (777)
+..........+++.|.+.
T Consensus 85 ~~~~~~~~~L~~~V~d~d~ 103 (148)
T 3fdw_A 85 PESLLAQRTLQFSVWHHGR 103 (148)
T ss_dssp CSTTGGGCEEEEEEEEECG
T ss_pred ChhHhCceEEEEEEEECCC
Confidence 7766555455677777763
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00023 Score=66.59 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=52.6
Q ss_pred CCcEEEEEEEEEecCCCccc---------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 390 KIGRLHLAITVLEESAKQGV---------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv---------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
..|+|++++.|.+....+.+ .+||++..+.. +..+..++||.++++++||+|||.|.|..+.
T Consensus 9 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 85 (142)
T 2dmg_A 9 PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYLLP---DKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85 (142)
T ss_dssp SSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTCCCEEEEEEEES---CCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred CcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCeeEEEEEEc---CCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence 36777777777655444332 35566555521 2223467899999999999999999988765
Q ss_pred CCCcCcccceeeeecCC
Q 004037 455 EKSPKVADNFEPINIEG 471 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G 471 (777)
.+.......+++.|.+.
T Consensus 86 ~~l~~~~L~i~V~d~d~ 102 (142)
T 2dmg_A 86 PEVQRRTLDVAVKNSGG 102 (142)
T ss_dssp HHHHHCEEEEEEEECCC
T ss_pred HHhCcCEEEEEEEECCC
Confidence 55444455678888763
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=7e-05 Score=72.18 Aligned_cols=84 Identities=7% Similarity=-0.037 Sum_probs=54.3
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .+||++.++... ...+..++||+++++|+||+|||.|.|..+
T Consensus 28 ~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~--~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~ 105 (155)
T 2z0u_A 28 GATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPC--SESTTCLFRTRPLDASDTLVFNEVFWVSMS 105 (155)
T ss_dssp CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESC--SCHHHHEEECCCEECCSSEEEEEEEEEECC
T ss_pred CcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecC--CCCCccceeCCcCCCCCCCccccEEEEEcC
Confidence 36777777777665544332 466666665211 112223689999999999999999999876
Q ss_pred CCCCcCcccceeeeecC--Cceee
Q 004037 454 SEKSPKVADNFEPINIE--GQQET 475 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~--G~ee~ 475 (777)
..+.......+++.|.+ +.++.
T Consensus 106 ~~~l~~~~L~~~V~d~d~~~~~d~ 129 (155)
T 2z0u_A 106 YPALHQKTLRVDVCTTDRSHLEEC 129 (155)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEE
T ss_pred HHHhCcCEEEEEEEECCCCCCCcE
Confidence 65544445567777776 44444
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00041 Score=63.55 Aligned_cols=79 Identities=6% Similarity=-0.047 Sum_probs=50.4
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|++++.|.+....+.+ .+||++..+.. +.....++||.+.++++||+|||.|.|.. +
T Consensus 4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 80 (129)
T 2bwq_A 4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLP---DRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 80 (129)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEES---SCSGGGEEECCCCSSBSSCEEEEEEEECSCC
T ss_pred eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEec---CCCCCcceecccccCCCCCccccEEEEccCC
Confidence 5777888777765544332 35565554421 12234678999999999999999988884 4
Q ss_pred CCCCcCcccceeeeecCCc
Q 004037 454 SEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~ 472 (777)
.+........+++.|.+..
T Consensus 81 ~~~~~~~~l~~~V~d~d~~ 99 (129)
T 2bwq_A 81 RREFRERMLEITLWDQARV 99 (129)
T ss_dssp GGGGGGCEEEEEEEEC---
T ss_pred HHHhcCCeEEEEEEECCcC
Confidence 4444444556778877643
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00052 Score=65.10 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .++|++..+.. -.-.++||++.++++||+|||.|.|..+
T Consensus 27 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~~~kT~v~~~t~nP~wne~f~f~v~ 101 (152)
T 1rsy_A 27 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP-----DKKKKFETKVHRKTLNPVFNEQFTFKVP 101 (152)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEET-----TCCSCEECCCCTTCSSCEEEEEEEECCC
T ss_pred CceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEc-----CCCceEeccccCCCCCCcCcccEEEeec
Confidence 46888888888766554432 35555554421 1124678999999999999999988776
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
..+.......+++.|.+.
T Consensus 102 ~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 102 YSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp HHHHTTCEEEEEEEECCS
T ss_pred HHHcCCCEEEEEEEECCC
Confidence 554444455678888774
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00085 Score=62.40 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=50.7
Q ss_pred CCcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-
Q 004037 390 KIGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS- 451 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~- 451 (777)
..|+|++++.|.+....+.+ .+||++..+.. -.-.++||.++++++||+|||.|.|.
T Consensus 7 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~-----~~~~~~kT~v~~~t~nP~wne~f~f~~ 81 (138)
T 1ugk_A 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP-----EKKHKVKTRVLRKTLDPAFDETFTFYG 81 (138)
T ss_dssp CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEET-----TTCSEEECCCCSSCSSCEEEEEEEEEC
T ss_pred ccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEec-----CCCceEecCcCcCCCCCcEeeEEEEcC
Confidence 36788888887665444332 34455444421 01257899999999999999998884
Q ss_pred cCCCCCcCcccceeeeecCC
Q 004037 452 VSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 452 ~~s~~~~kv~~~~e~id~~G 471 (777)
.+.++.......+++.|.+.
T Consensus 82 v~~~~~~~~~l~i~V~d~d~ 101 (138)
T 1ugk_A 82 IPYTQIQELALHFTILSFDR 101 (138)
T ss_dssp CCSTTGGGCEEEEEEEEECS
T ss_pred cCHHHhccCEEEEEEEECCC
Confidence 66665555556678887763
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00052 Score=64.09 Aligned_cols=79 Identities=9% Similarity=0.091 Sum_probs=50.4
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-c
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-V 452 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~ 452 (777)
..|+|.+++.|.+....+.+ .+||++..+.. +..+..++||.+.++++||+|||.|.|. .
T Consensus 14 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~~~ 90 (142)
T 2chd_A 14 TLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP---GASKSNKLRTKTLRNTRNPVWNETLQYHGI 90 (142)
T ss_dssp CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEES---CCSGGGEEECCCCCSCSSCEEEEEEEEESC
T ss_pred ccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEc---CCCCcceeeCCcCCCCCCCcCcCEEEEccc
Confidence 36788888887665544332 35566555521 2223467899999999999999998876 4
Q ss_pred CCCCCcCcccceeeeecCC
Q 004037 453 SSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 453 ~s~~~~kv~~~~e~id~~G 471 (777)
+..........+++.|.+.
T Consensus 91 ~~~~~~~~~l~i~V~d~d~ 109 (142)
T 2chd_A 91 TEEDMQRKTLRISVCDEDK 109 (142)
T ss_dssp CHHHHHHCEEEEEEEEECT
T ss_pred CHHHccCCEEEEEEEECCC
Confidence 4443333345577777663
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00068 Score=63.40 Aligned_cols=77 Identities=10% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .++|++..+.. ..-.++||++.++++||+|||.|.|..+
T Consensus 19 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~-----~~~~~~kT~v~~~t~nP~wne~f~f~v~ 93 (143)
T 3f04_A 19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP-----DKKKKFETKVHRKTLNPVFNEQFTFKVP 93 (143)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEES-----CCSCCEECCCCCSCSSCEEEEEEEECCC
T ss_pred CeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEEC-----CCCccEECccCcCCCCCcCcCeEEEeec
Confidence 47888888888766555432 35565554411 1124688999999999999999988876
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
..+.......+++.|.+.
T Consensus 94 ~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 94 YSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp HHHHTTCEEEEEEEECCS
T ss_pred HhhcCCCEEEEEEEeCCC
Confidence 655444455677777764
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=61.87 Aligned_cols=76 Identities=11% Similarity=0.089 Sum_probs=48.5
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCccccccccccc-C
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S 453 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~-~ 453 (777)
.|+|++++.|.+....+.+ .+||++..+.. ..-.++||+++++++||+|||.|.|.. +
T Consensus 12 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 86 (141)
T 2d8k_A 12 LGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP-----DKKHKLETKVKRKNLNPHWNETFLFEGFP 86 (141)
T ss_dssp CCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEES-----CCSSEEECCCCTTCSSCCCCEEEEECSCC
T ss_pred eeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEEC-----CCCccEeCceEcCCCCCccccEEEECccC
Confidence 5777777777665444332 35565554421 112457899999999999999988874 3
Q ss_pred CCCCcCcccceeeeecCC
Q 004037 454 SEKSPKVADNFEPINIEG 471 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G 471 (777)
.+........+++.|.+.
T Consensus 87 ~~~~~~~~l~i~V~d~d~ 104 (141)
T 2d8k_A 87 YEKVVQRILYLQVLDYDR 104 (141)
T ss_dssp HHHHTTSEEEEEEEECCS
T ss_pred HHHcccCEEEEEEEECCC
Confidence 333333445677777764
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=62.26 Aligned_cols=43 Identities=2% Similarity=0.047 Sum_probs=33.0
Q ss_pred ccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++||+++++++||+|||.|.|..+..+.......+++.|.+.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~ 110 (147)
T 2enp_A 68 NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDK 110 (147)
T ss_dssp SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCST
T ss_pred cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCC
Confidence 4678999999999999999999876554443445677888763
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0029 Score=58.87 Aligned_cols=70 Identities=10% Similarity=-0.029 Sum_probs=43.8
Q ss_pred ccccceeccCCCCcccccccccc-cCCCCCcCcccceeeeecCC--ceee-ceEEeccCcccccccccccCCCCccccee
Q 004037 429 QSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG--QQET-GIWVHQPGSEVAQTWEPRKGKNRRLDTLV 504 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~-~~s~~~~kv~~~~e~id~~G--~ee~-gi~v~~pg~~v~~~w~~~~~~~r~~~~~~ 504 (777)
.++||++.++++||+|||.|.|. .+.+........+++.|.+. .++. |- +..|-..+.. .....+|
T Consensus 64 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~-~~i~l~~l~~---------~~~~~~W 133 (142)
T 1rh8_A 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGE-VLIDLSSTSH---------LDNTPRW 133 (142)
T ss_dssp HHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEE-EEEETTSCGG---------GTTCCEE
T ss_pred ceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEE-EEEecccccc---------CCCCCeE
Confidence 46889999999999999998886 55444344455677777764 3443 43 3334443311 1234578
Q ss_pred eecC
Q 004037 505 RRVP 508 (777)
Q Consensus 505 ~~~~ 508 (777)
+..-
T Consensus 134 ~~L~ 137 (142)
T 1rh8_A 134 YPLK 137 (142)
T ss_dssp EECB
T ss_pred EECC
Confidence 7765
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0056 Score=56.88 Aligned_cols=59 Identities=17% Similarity=0.093 Sum_probs=42.1
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+.. +..+..++||+++++++||+|||.|.|. .+.++.......+++.|.+.
T Consensus 40 ~DPyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~ 99 (134)
T 2b3r_A 40 PNPYVKTYLLP---DTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAES 99 (134)
T ss_dssp CCEEEEEEEES---CSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCS
T ss_pred CCeEEEEEEEc---CCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCC
Confidence 57787766631 2224456899999999999999999888 66554444455678888764
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0087 Score=57.99 Aligned_cols=56 Identities=9% Similarity=-0.086 Sum_probs=37.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeee-ecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~i-d~~G 471 (777)
.++|++..+.. ......++||.++++++||+|||.|.|..... .....+++. |.+.
T Consensus 52 ~DPyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~L~~~V~~d~d~ 108 (171)
T 2q3x_A 52 PAPYVKVYLLE---NGACIAKKKTRIARKTLDPLYQQSLVFDESPQ---GKVLQVIVWGDYGR 108 (171)
T ss_dssp CEEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEEEEEECSSCCT---TEEEEEEEEEECST
T ss_pred CCceEEEEEEC---CCccccceeCccCCCCCCCCCCcEEEEEecCC---CCEEEEEEEEcCCC
Confidence 34565554421 22233578999999999999999998887543 233457777 7663
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.013 Score=55.18 Aligned_cols=58 Identities=10% Similarity=-0.013 Sum_probs=38.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.++|++..+.. ......++||++.++++||+|||.|.|.....+... ...+++.|.+.
T Consensus 52 ~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~L~i~V~d~d~ 109 (149)
T 1a25_A 52 SDPYVKLKLIP---DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWDL 109 (149)
T ss_dssp CCEEEEEEEES---CTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGC-EEEEEEEECCS
T ss_pred cCeEEEEEEEC---CCCCcceEecceeCCCCCCcCCcEEEEEeccccCCC-EEEEEEEECCC
Confidence 46676665521 122245689999999999999999988875543322 34577777764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.08 Score=47.80 Aligned_cols=55 Identities=5% Similarity=-0.052 Sum_probs=38.2
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+. .....++||++.++++||+|||.|.|........ ...+++.|.+.
T Consensus 27 ~dpyv~v~~~-----~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~--~l~i~V~d~d~ 81 (126)
T 1rlw_A 27 PDPYVELFIS-----TTPDSRKRTRHFNNDINPVWNETFEFILDPNQEN--VLEITLMDANY 81 (126)
T ss_dssp CCEEEEEECT-----TSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCC--EEEEEEEECCS
T ss_pred CCCEEEEEEc-----cCCCceEEccccCCCCCCcccceEEEEecCCCCC--EEEEEEEECCC
Confidence 5788876662 1112568999999999999999998887544433 33567777663
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.094 Score=48.63 Aligned_cols=68 Identities=7% Similarity=-0.055 Sum_probs=38.3
Q ss_pred CcEEEEEEEEEecCCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 391 IGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.|.|++.+.-..........+||++.+. ...+++.++++++||+|||.|.|....... ...+++.|.+
T Consensus 4 ~~~L~V~V~~A~~l~~~g~~DPYv~v~~---------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~---~L~~~V~D~d 71 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGAQEKFNTYVTLKV---------QNVKSTTIAVRGSQPSWEQDFMFEINRLDL---GLTVEVWNKG 71 (131)
T ss_dssp CEEEEEEEEEEECSSCGGGCEEEEEEEE---------TTEEEECCCEESSSCEEEEEEEEEECCCSS---EEEEEEEECC
T ss_pred ceEEEEEEEEeECCCCCCCcCeEEEEEe---------cCEEEeEecCCCCCceECCEEEEEEeCCCC---eEEEEEEECC
Confidence 3555555543222111223577776541 112333445579999999999888764222 2457777776
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.19 Score=46.21 Aligned_cols=73 Identities=10% Similarity=-0.003 Sum_probs=47.2
Q ss_pred CCcEEEEEEEEEec---CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCC-cCccccee
Q 004037 390 KIGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFE 465 (777)
Q Consensus 390 ~~GeI~LsL~y~p~---s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~-~kv~~~~e 465 (777)
..|.|++.+.--.. ... ...++|+...+. . .++||.+.++++||+|||.|.|....... ......++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~ 75 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK-----D---EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGII 75 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS-----S---CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEE
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC-----C---EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEE
Confidence 35777776653221 112 336788776662 1 35899999999999999999888754322 23444677
Q ss_pred eeecCC
Q 004037 466 PINIEG 471 (777)
Q Consensus 466 ~id~~G 471 (777)
+.|.+.
T Consensus 76 V~d~d~ 81 (140)
T 2dmh_A 76 VKDFET 81 (140)
T ss_dssp EEETTC
T ss_pred EEECCC
Confidence 777763
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.1 Score=50.39 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=35.0
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||+..++. . .++.||+++++|+||+|||.|.+.+... ....+++.|.+
T Consensus 60 sDPYv~v~l~-----~--~~~~kT~v~~ktlnP~WNE~F~f~v~~~----~~L~~~V~D~d 109 (157)
T 2fk9_A 60 LDPYLTVSVD-----Q--VRVGQTSTKQKTNKPTYNEEFCANVTDG----GHLELAVFHET 109 (157)
T ss_dssp CCEEEEEEET-----T--EEEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECC
T ss_pred CCeEEEEEEC-----C--EeeEEeeecCCCCCCccCcEEEEEcCCC----CEEEEEEEECC
Confidence 5788877662 2 2346888999999999999988876421 23456666765
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=90.18 E-value=0.36 Score=45.06 Aligned_cols=78 Identities=13% Similarity=-0.016 Sum_probs=45.8
Q ss_pred CCCcEEEEEEEEEec---CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCccccee
Q 004037 389 IKIGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFE 465 (777)
Q Consensus 389 ~~~GeI~LsL~y~p~---s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e 465 (777)
...|.|++.+.--.. .......++|+...+... +.....++||++.++++||+|||.|.+...... ....++
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~l~~~ 91 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDP--MNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQ---HRLLFE 91 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEET--TTEEEEEEECCCCSSCSSCCCCEEEEEEECTTT---CEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC--CCccceeeeCccccCCCCCCCCCEEEEEecCCC---CEEEEE
Confidence 346676666542211 111223578887666311 111235689999999999999999888775432 234577
Q ss_pred eeecCC
Q 004037 466 PINIEG 471 (777)
Q Consensus 466 ~id~~G 471 (777)
+.|.+.
T Consensus 92 V~d~d~ 97 (153)
T 3b7y_A 92 VFDENR 97 (153)
T ss_dssp EEECCS
T ss_pred EEECCC
Confidence 777764
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=88.63 E-value=0.24 Score=48.11 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=36.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||++..+. . .++||+++++++||+|||.|.|.... .-...+++.|.+.
T Consensus 57 sDPYv~v~~~-----~---~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~d~ 106 (173)
T 2nq3_A 57 PSPYVEVTVD-----G---QSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQT 106 (173)
T ss_dssp CCEEEEEEET-----T---EEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECCS
T ss_pred CCeEEEEEEC-----C---EEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEECCC
Confidence 5788876662 2 56899999999999999998887632 2334577777763
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.78 E-value=0.25 Score=47.65 Aligned_cols=77 Identities=12% Similarity=-0.016 Sum_probs=46.4
Q ss_pred CCcEEEEEEEEEec---CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceee
Q 004037 390 KIGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP 466 (777)
Q Consensus 390 ~~GeI~LsL~y~p~---s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~ 466 (777)
..|.|.+.+.--.. .......++|+...+... ......+.||.++++++||+|||.|.|...... -...+++
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~L~~~V 80 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDP--MSGILTSVQTKTIKKSLNPKWNEEILFRVLPQR---HRILFEV 80 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEET--TTEEEEEEECCCCSSCSSCEEEEEEEEEECTTT---CEEEEEE
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECC--CCCcccceeCceECCCCCCcccceEEEEEcCCC---CEEEEEE
Confidence 46777766653221 111233678887766321 112235679999999999999999888775432 2234667
Q ss_pred eecCC
Q 004037 467 INIEG 471 (777)
Q Consensus 467 id~~G 471 (777)
.|.+.
T Consensus 81 ~d~d~ 85 (176)
T 3m7f_B 81 FDENR 85 (176)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 77653
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=87.53 E-value=0.39 Score=46.53 Aligned_cols=67 Identities=9% Similarity=-0.047 Sum_probs=37.7
Q ss_pred CcEEEEEEEEEecCCCccccCCCcCCcccccCCCccccccccce-eccCCCCcccccccccccCCCCCcCcccceeeeec
Q 004037 391 IGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKED-IRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 469 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~-vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~ 469 (777)
.|.|++.+.-..........+||++.+. ...||+ ++++++||+|||.|.|....... ...+++.|.
T Consensus 13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~~----------~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~---~L~~~V~D~ 79 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDGAQEKFNTYVTLKV----------QNVESTTIAVRGSQPSWEQDFMFEINRLDL---GLTVEVWNK 79 (167)
T ss_dssp CCEEEEEEEEEECSSCGGGCEEEEEEEE----------TTEEEECCCEESSSCEEEEEEEEECCCTTS---EEEEEEEEC
T ss_pred eEEEEEEEEEEECCCCCCCCCeEEEEEe----------cceEEEEecCCCCCCCCCCEEEEEeeCCCC---EEEEEEEEC
Confidence 3455555432221111223577776541 123443 44579999999999988764322 245777777
Q ss_pred C
Q 004037 470 E 470 (777)
Q Consensus 470 ~ 470 (777)
+
T Consensus 80 d 80 (167)
T 2cjs_A 80 G 80 (167)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=87.19 E-value=0.42 Score=43.64 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred CcEEEEEEEEE---ecCCCccccCCCcCCcccccCCCccccccccceecc-CCCCcccccccccccCCCCCcCcccceee
Q 004037 391 IGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEP 466 (777)
Q Consensus 391 ~GeI~LsL~y~---p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk-~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~ 466 (777)
.|.|++.+.-- +........+||+...+. . .+.||++.+ +++||+|||.|.+.... ..-...+++
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V 77 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----T---QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKI 77 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----S---CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEE
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEEC-----C---ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEE
Confidence 56666665422 222222336788876662 1 236777777 89999999998887653 222345677
Q ss_pred eecC
Q 004037 467 INIE 470 (777)
Q Consensus 467 id~~ 470 (777)
.|.+
T Consensus 78 ~d~~ 81 (136)
T 1wfj_A 78 FDKD 81 (136)
T ss_dssp CCSS
T ss_pred EECC
Confidence 7766
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=0.36 Score=44.85 Aligned_cols=70 Identities=7% Similarity=0.108 Sum_probs=44.5
Q ss_pred CcEEEEEEEEEec---CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeee
Q 004037 391 IGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 467 (777)
Q Consensus 391 ~GeI~LsL~y~p~---s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~i 467 (777)
.|.|++.+.--.. .......+||+...+ +. .+.+|++.++++||+|||.|.+...... . ...+++.
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~-----~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~-~--~l~~~v~ 84 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV-----GK---TKKRTKTIYGNLNPVWEENFHFECHNSS-D--RIKVRVL 84 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE-----TT---EEEECCCCCSCSSCEEEEEEEEEECSTT-C--EEEEEEE
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE-----CC---EEEECCccCCCCCCCcccEEEEEecCCC-C--EEEEEEE
Confidence 5777766653221 111233578877666 11 4578999999999999999888764432 2 2456777
Q ss_pred ecCC
Q 004037 468 NIEG 471 (777)
Q Consensus 468 d~~G 471 (777)
|.+.
T Consensus 85 d~d~ 88 (148)
T 3kwu_A 85 DEDD 88 (148)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7764
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=86.40 E-value=0.13 Score=47.36 Aligned_cols=50 Identities=4% Similarity=-0.001 Sum_probs=34.8
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+. . .++.+|.++++|+||+|||.|.+..... -...+++.|.+
T Consensus 38 ~DPyv~v~l~-----~--~~~~~T~~~~~t~nP~WnE~f~f~v~~~----~~L~~~V~d~d 87 (136)
T 1gmi_A 38 LDPYIALNVD-----D--SRIGQTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDA 87 (136)
T ss_dssp CCEEEEEEET-----T--EEEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECC
T ss_pred cCcEEEEEEC-----C--eEeeeeeEECCCcCCccCCEEEEEecCC----CEEEEEEEeCC
Confidence 5788776662 1 2346888899999999999988876432 23446777766
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=85.62 E-value=0.33 Score=44.29 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=36.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCCc
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 472 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G~ 472 (777)
.+||++..+... -.++||.+.++++||+|||.|.+...... . ..+++.|.+..
T Consensus 26 sDpyv~v~~~~~------~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~--l~~~v~d~d~~ 78 (132)
T 3pyc_A 26 PDPFAKIVVDGS------GQCHSTDTVKNTLDPKWNQHYDLYVGKTD--S--ITISVWNHKKI 78 (132)
T ss_dssp CCEEEEEEETTT------CCEEECCCCSSCSSCEEEEEEEEEEETTC--C--EEEEEEEGGGT
T ss_pred cCeEEEEEECCC------CceEECCccCCCCCCCccCEEEEEeCCCC--E--EEEEEEECCCC
Confidence 578887666211 14688999999999999999877664322 1 45777777643
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=85.07 E-value=0.56 Score=42.75 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=44.4
Q ss_pred CCcEEEEEEEEEec---CCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceee
Q 004037 390 KIGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP 466 (777)
Q Consensus 390 ~~GeI~LsL~y~p~---s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~ 466 (777)
..|.|++.+.-... .......+||+...+. . .+.||++.++++||+|||.|.+..... . -...+++
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~-~--~~l~i~V 79 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELG-----N---DRLQTHTVYKNLNPEWNKVFTFPIKDI-H--DVLEVTV 79 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----T---EEEECCCCSSCSSCCCCEEEEEEESCT-T--CEEEEEE
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC-----C---EEEEeeeecCCCCCccccEEEEEecCC-C--CEEEEEE
Confidence 36777776653221 1112235778776662 1 246899999999999999988877532 1 2345667
Q ss_pred eecCC
Q 004037 467 INIEG 471 (777)
Q Consensus 467 id~~G 471 (777)
.|.+.
T Consensus 80 ~d~d~ 84 (133)
T 2ep6_A 80 FDEDG 84 (133)
T ss_dssp EEEET
T ss_pred EECCC
Confidence 77654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 777 | ||||
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-22 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-20 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-20 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-18 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-16 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-16 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-15 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-15 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-14 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-14 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-13 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-13 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 4e-12 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-12 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-11 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-11 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-11 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 9e-10 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 7e-08 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (221), Expect = 8e-22
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 288 RVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 341
V V+ A+ + D+ DPYV+ + R RT+ ++P W+E F I
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE-FIL 64
Query: 342 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401
+ NVL I + D ++ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 279 DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 338
DVK V +V+V++A+D+ +D +G +DP+ +LG R +T T K L+P+W++ F
Sbjct: 1 DVK-DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 339 PISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----G 392
PI D +VL + V D+D D LG I + +RDGQ + L+N + G
Sbjct: 60 PI--KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN--CYVLKNKDLEQAFKG 115
Query: 393 RLHLAITVL 401
++L + ++
Sbjct: 116 VIYLEMDLI 124
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.7 bits (214), Expect = 1e-20
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD 344
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F + +
Sbjct: 37 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 345 SPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.4 bits (208), Expect = 5e-20
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 342
V V +A ++ P D NGL+DPYVK +L P +TKT + +L+P+W+E F +
Sbjct: 18 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 77
Query: 343 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
D L +E+ D D +D +G + IS+L+ D W L + + G
Sbjct: 78 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEG 127
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 7e-18
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPI-- 340
V ++ A D+ + +PYVK P R RTKT +KTL PKW++ F
Sbjct: 17 IVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 76
Query: 341 STWDSPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+L I + D+ + LG+ I + W LQ
Sbjct: 77 RREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 125
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.2 bits (184), Expect = 1e-16
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 7/131 (5%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNIPIS 341
P V +V A ++ +D DPYV+ ++ + +P+W+E F +S
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQ--NIKIGRLHLA 397
+ L ++ DKD DD +G+ TI + + +G + G + +A
Sbjct: 68 --EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVA 125
Query: 398 ITVLEESAKQG 408
++ G
Sbjct: 126 LSFKPSGPSSG 136
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.9 bits (183), Expect = 2e-16
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 333
+ +++A ++ P D NG +DP+VK L P Y+ RTK +K+L+P+W+
Sbjct: 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 334 EEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
+ + + L + V D D F +D LG+ I++S W PL+
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.7 bits (175), Expect = 1e-15
Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 10/127 (7%)
Query: 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEF 336
P E ++ + + P+ ++ ++ T+ P+W F
Sbjct: 2 APFLRISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTF 59
Query: 337 NIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396
+ I +++ +D + T+G + ++ + + W+ LQ ++ +
Sbjct: 60 DAHIYEGRVIQIVL-MRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLM 116
Query: 397 AITVLEE 403
+ E
Sbjct: 117 CVQYFLE 123
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.1 bits (176), Expect = 1e-15
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V++A + SD++GL+DPYVK L + +T ++ T + ++E F I
Sbjct: 18 TVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77
Query: 343 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 387
+ V D + ++ +G + + G H W L
Sbjct: 78 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 68.8 bits (167), Expect = 2e-14
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 288 RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYRF-RTKTQRKTLSPKWHEE 335
++++ EA +KP+ L DPY+ + R +T T++KT SP WH+E
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 336 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQNIKIG 392
F + + V DD + +CTI +L + + WI L+ G
Sbjct: 69 FVTDVCNGRKI---ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123
Query: 393 RLHLAITVLEESA 405
++++ I + S
Sbjct: 124 KVYVIIDLSGSSG 136
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPIST 342
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 28 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
V +V+ V D D +D +G + + RH W LQ
Sbjct: 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147
Query: 389 IKIGRLHLAI 398
+ LA+
Sbjct: 148 EEEVDAMLAV 157
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.5 bits (159), Expect = 2e-13
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V +A + + YV ++ + T + P W ++F I+ D
Sbjct: 6 VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLG-- 59
Query: 349 LVIEVRDKDHFVDDTLGDCTINISDLR--DGQRHDMWIPLQ 387
L +EV +K D +G I + +R + + W+ L
Sbjct: 60 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 100
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (158), Expect = 3e-13
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 18 IVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77
Query: 343 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
D + L I V D D +D +G C + IS + +H + W LQN
Sbjct: 78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 137
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 4e-12
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 330
+ +D A V +EA + +G D YV+G + +T +++ L
Sbjct: 16 HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72
Query: 331 KWHEEFNIPISTWDSP-NVLVIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDMWIPLQ 387
W E +P++ + P L + +R D F ++ G+ + + W L+
Sbjct: 73 TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 4e-12
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
++ V+ A + PYV+ + +T+ T SPKW + + ++ +
Sbjct: 9 QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV---S 65
Query: 348 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQ-------NIKIGRLHL 396
L V D LG ++I + + + ++ + LQ IG L +
Sbjct: 66 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125
Query: 397 AITVLE 402
+ L+
Sbjct: 126 CLDGLQ 131
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLGP---YRFRTKTQRKTLSP 330
+FS++ V + EA + D +DPY+K + P ++ +T+ RKTL P
Sbjct: 12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71
Query: 331 KWHEEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ E F + L + D F DD +G+ I +S + + M + +
Sbjct: 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK-MLMNRE 130
Query: 388 NIK 390
I
Sbjct: 131 IIS 133
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 2e-11
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 288 RVEVVEASDMKP--SDLNGLADPYVKGQLGPYRFRTKTQRKT------LSPKWHEEFNIP 339
RV ++ + + N + DP V ++ T +++ +P+W EF
Sbjct: 7 RVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 66
Query: 340 ISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
+ T ++ V D D + +G TI + L+ G R + L + + A
Sbjct: 67 V-TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQHPSA 121
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (142), Expect = 5e-11
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPIST 342
V +++AS++K DL G +DPYVK L + +T ++ TL+P ++E ++
Sbjct: 23 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 82
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 387
NV L I V D D ++ +G C + + + W L
Sbjct: 83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 142
Query: 388 NIK 390
K
Sbjct: 143 EEK 145
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 9e-10
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
F++ V +++A D+ D NG +DPYVK L P R F+TK RKTL+P
Sbjct: 8 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 67
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387
++E F + + L V D D F D +G ++ +W +
Sbjct: 68 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 7e-08
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------YRFRTKTQRKTLSPKWHEEFNI- 338
+ V+ + YV+ +L YR + +++P W EE +
Sbjct: 4 SITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
L + V ++ + LG I I+ L G H + L + L +
Sbjct: 60 EKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGYHH---LCLHSESNMPLTMP 112
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 777 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.81 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.77 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.77 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.75 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.74 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.72 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.72 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.7 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.7 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.67 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.67 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.67 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.66 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.62 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.58 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.82 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 98.82 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.68 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 98.5 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 97.37 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 97.17 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 97.11 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 97.01 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 96.65 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 95.85 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.72 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 92.22 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 91.65 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 90.06 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 88.86 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 87.21 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 87.17 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 86.88 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 84.49 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.8e-21 Score=176.38 Aligned_cols=117 Identities=32% Similarity=0.518 Sum_probs=104.4
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-
Q 004037 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (777)
Q Consensus 282 ~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~- 360 (777)
.+.|.|+|+|++|++|+.++..|.+||||++++++++++|+++++|.||.|||+|.|.+.. ..+.|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~~~ 80 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDEDGDKP 80 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEEETTEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEec--cCceeEEEEEEccCCcC
Confidence 4689999999999999999999999999999999999999999999999999999999985 3468999999999987
Q ss_pred CceeEEEEEeCCcccCCCccceeeeccC-----CCCcEEEEEEEEEe
Q 004037 361 DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE 402 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~y~p 402 (777)
|++||++.++|+++..+. ..|+.|.. ..+|+|+|+++|..
T Consensus 81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEEE
Confidence 899999999999987654 36777654 34799999999875
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4e-20 Score=170.18 Aligned_cols=118 Identities=25% Similarity=0.416 Sum_probs=105.4
Q ss_pred eeEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecC
Q 004037 284 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~---D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D 357 (777)
.+.|+|+|++|++|+.. |..|.+||||++++++ ++++|+++.++.||.|||+|.|.+... ....|.|+|||+|
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence 36899999999999864 3468999999999976 688999999999999999999998753 3568999999999
Q ss_pred CCCCceeEEEEEeCCcccCCCccceeeeccCCCCcEEEEEEEEEe
Q 004037 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 358 ~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
..+|++||++.++|+++..+...+.||+|.+...|+|++++.+.+
T Consensus 81 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred CCCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence 888999999999999999888889999999888899999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=5.3e-20 Score=171.88 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=106.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcccceeeEecccCCCCcEEEEEEeecCCC
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~-~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~ 359 (777)
..+.|.|+|+|++|++|+..+..|.+||||+++++++.++|++++ +++||.|||+|.|.+.. ....|+|+|||+|.+
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~--~~~~L~v~V~d~d~~ 83 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVG 83 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSC
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcC--ccceEEEEEEEecCC
Confidence 458899999999999999999999999999999999999999987 58999999999999985 345799999999998
Q ss_pred C-CceeEEEEEeCCcccC-CCccceeeeccCC--CCcEEEEEEEEEecCC
Q 004037 360 V-DDTLGDCTINISDLRD-GQRHDMWIPLQNI--KIGRLHLAITVLEESA 405 (777)
Q Consensus 360 ~-Dd~IG~v~I~L~~L~~-~~~~~~W~~L~~~--~~GeI~LsL~y~p~s~ 405 (777)
+ |++||++.|+|.++.. +.....|+.|... ..|+|+|+++|.|...
T Consensus 84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~p 133 (136)
T d1wfja_ 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP 133 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCCC
Confidence 7 8999999999998754 3445678888542 3799999999998543
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=5.9e-19 Score=166.35 Aligned_cols=116 Identities=29% Similarity=0.484 Sum_probs=103.7
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcccceeeEecccCC-CCcE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg---~~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~~ 348 (777)
...+++.|+...+.|+|+|++|+||+.++..|.+||||++++. .++++|+++++|.||.|||+|.|.+...+ ....
T Consensus 22 ~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~ 101 (143)
T d1rsya_ 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKT 101 (143)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCE
T ss_pred EEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCce
Confidence 3568999999999999999999999999999999999999993 36789999999999999999999886422 3468
Q ss_pred EEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 349 L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
|.|+|||++.++ +++||++.|+|.++..+.....|++|+.
T Consensus 102 L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 102 LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 999999999987 8899999999999998888889999974
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=2.4e-19 Score=166.62 Aligned_cols=111 Identities=32% Similarity=0.504 Sum_probs=96.1
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEee
Q 004037 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (777)
Q Consensus 281 ~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~L-----g~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D 355 (777)
....+.|+|+|++|+||+.+|.+|.+||||++++ +..+++|+++++|+||.|||+|.|.+...+....|.|.|||
T Consensus 11 ~~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 90 (132)
T d1a25a_ 11 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 90 (132)
T ss_dssp EESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred EecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEe
Confidence 3356899999999999999999999999999998 33688999999999999999999998754445689999999
Q ss_pred cCCCC-CceeEEEEEeCCcccCCCccceeeeccCCCCc
Q 004037 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392 (777)
Q Consensus 356 ~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~G 392 (777)
+|.++ |++||++.|+|.++..+. .+.|++|.+.+.|
T Consensus 91 ~d~~~~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~~~g 127 (132)
T d1a25a_ 91 WDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEG 127 (132)
T ss_dssp CCSSSCCEEEEEEEEEHHHHTTCC-EEEEEECBCHHHH
T ss_pred cCCCCCCcEeEEEEEeHHHcCCCC-CCeEEECCCCCCC
Confidence 99987 899999999999987654 5789999865444
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.75 E-value=2.9e-18 Score=160.67 Aligned_cols=116 Identities=28% Similarity=0.479 Sum_probs=101.5
Q ss_pred eeEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEeCCeE-EEeeeecCCCCCcccceeeEecccCCCCcEEEE
Q 004037 284 VAYARVEVVEASDMKPSD-----------LNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI 351 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D-----------~~G~sDPYV~v~Lg~~k-~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V 351 (777)
.|.|+|+|++|++|++.+ ..+.+||||+++++.+. .+|+++.++.||.|||+|.|.+.+ .+.|.|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~---~~~l~i 81 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec---CCceEE
Confidence 689999999999998753 35789999999999854 689999999999999999999974 368999
Q ss_pred EEeecCCCC-CceeEEEEEeCCcccCCC--ccceeeeccCCCCcEEEEEEEEEecC
Q 004037 352 EVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEES 404 (777)
Q Consensus 352 ~V~D~D~~~-Dd~IG~v~I~L~~L~~~~--~~~~W~~L~~~~~GeI~LsL~y~p~s 404 (777)
+|||++.++ |++||.+.|+|+++.... ..+.|++|++ .|+|++.+.+.+.+
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGSS 135 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeCC
Confidence 999999987 899999999999987654 3578999984 89999999998765
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=2.8e-18 Score=159.26 Aligned_cols=117 Identities=28% Similarity=0.435 Sum_probs=98.8
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
+...+++.|++..+.|.|+|++|+||+.++.+|.+||||++++.+ ++++|+++++|.||.|||+|.|.+...+ ...
T Consensus 5 G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~ 84 (130)
T d1dqva1 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR 84 (130)
T ss_dssp CEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSC
T ss_pred EEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCC
Confidence 345789999999999999999999999999999999999999954 6789999999999999999999986432 245
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCc-ccCC-CccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISD-LRDG-QRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~-L~~~-~~~~~W~~L~~ 388 (777)
.|.|+|||+|.++ |++||++.|++.. +... .....|++|..
T Consensus 85 ~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 85 KLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp CCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred eEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 7999999999886 9999999998653 3322 33567999975
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=9.9e-19 Score=163.81 Aligned_cols=115 Identities=28% Similarity=0.504 Sum_probs=98.1
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--------------eEEEeeeecCCCCCcccceeeE
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWHEEFNI 338 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~--------------~k~kTkVi~~TlnP~WnEtF~f 338 (777)
...+++.|+ .|.|.|+|++|+||+.++..|.+||||++++.+ ++++|+++++|+||.|||+|.|
T Consensus 8 ~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f 85 (142)
T d1rh8a_ 8 EIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIY 85 (142)
T ss_dssp EEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEE
T ss_pred EEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEE
Confidence 346778885 589999999999999999999999999999843 2368999999999999999999
Q ss_pred ecccCC--CCcEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 339 PISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 339 ~V~~~e--~~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
.+...+ ....|.|.|||+|.++ |++||++.|+|.++..+.....||+|++.
T Consensus 86 ~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 86 KSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp CSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred eeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 743211 3458999999999887 89999999999999888888899999864
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.9e-17 Score=155.25 Aligned_cols=115 Identities=20% Similarity=0.337 Sum_probs=101.0
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
+...++++|+...+.|.|+|++|++|+ ..|.+||||++++.+ ..++|++++++.||.|||+|.|.+...+ ..
T Consensus 13 ~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~ 89 (138)
T d1wfma_ 13 PKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPT 89 (138)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTT
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccc
Confidence 446799999999999999999999995 357899999999954 4688999999999999999999987533 34
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccCC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (777)
..|.|+|||+|.++ +++||++.|+|.++......+.|++|+..
T Consensus 90 ~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 90 ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred eEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 68999999999987 89999999999999888778999999864
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=1.9e-17 Score=154.62 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=95.2
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC-Cc
Q 004037 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (777)
Q Consensus 284 ~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~-Dd 362 (777)
.+.|.|+|++|++++..+..+.+||||++.++++.++|+++++|+||.|||.|.|.+.. .+.|.|+|||+|.++ |+
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~~~~d~ 81 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKSDV 81 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSCCE
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccCCCCCc
Confidence 37899999999999988888899999999999999999999999999999999999874 368999999999987 89
Q ss_pred eeEEEEEeCCcccC---CCcc--ceeeeccC-----CCCcEEEEEEEEEe
Q 004037 363 TLGDCTINISDLRD---GQRH--DMWIPLQN-----IKIGRLHLAITVLE 402 (777)
Q Consensus 363 ~IG~v~I~L~~L~~---~~~~--~~W~~L~~-----~~~GeI~LsL~y~p 402 (777)
+||++.++|.++.. +... ..|+.|.+ ...|+|.+.|.+..
T Consensus 82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence 99999999998743 2222 33444433 23699998887653
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.8e-17 Score=151.13 Aligned_cols=112 Identities=25% Similarity=0.363 Sum_probs=93.0
Q ss_pred ceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEe-cccCC-CCc
Q 004037 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SPN 347 (777)
Q Consensus 275 ~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~~~ 347 (777)
.+++.|++..+.|+|+|++|+||+..+.++.+||||++++.+ .+++|+++++++||.|||+|.|. +...+ ...
T Consensus 4 ~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~ 83 (125)
T d2bwqa1 4 SIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRER 83 (125)
T ss_dssp EEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGC
T ss_pred EEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCC
Confidence 467899999999999999999999999899999999999932 67899999999999999999996 44322 245
Q ss_pred EEEEEEeecCCCC---CceeEEEEEeCCcccCCCccceeeecc
Q 004037 348 VLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 348 ~L~V~V~D~D~~~---Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
.|.|.|||.+.++ +++||++.|+|+++.... ...||+|+
T Consensus 84 ~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~ 125 (125)
T d2bwqa1 84 MLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 125 (125)
T ss_dssp EEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence 7999999999863 569999999999987655 35799985
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.5e-16 Score=147.85 Aligned_cols=113 Identities=29% Similarity=0.424 Sum_probs=95.5
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CCc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~~ 347 (777)
..+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+ .+++|+++++|.||.|||+|.|.+...+ ...
T Consensus 4 l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 83 (137)
T d2cm5a1 4 ILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK 83 (137)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGC
T ss_pred EEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHcccc
Confidence 4578999999999999999999999999899999999999833 5789999999999999999999987533 235
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeeccC
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~ 388 (777)
.|.|.|||.+.++ +++||++.++|..+.. ....|+.|..
T Consensus 84 ~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~~ 123 (137)
T d2cm5a1 84 SLDISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECLK 123 (137)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHHH
T ss_pred EEEEEeeeCCCCCCCCEEEEEEeCccccCc--chhhhhhHhh
Confidence 7999999999886 8999999999986532 3345766654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.8e-16 Score=148.36 Aligned_cols=116 Identities=24% Similarity=0.318 Sum_probs=95.8
Q ss_pred CCcceeeeecCceeEEEEEEEEecCCCCCCCCC-CCCcEEEEEeC---CeEEEeeeecCCCCCcccceeeEe-cccCC-C
Q 004037 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 345 (777)
Q Consensus 272 ~~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G-~sDPYV~v~Lg---~~k~kTkVi~~TlnP~WnEtF~f~-V~~~e-~ 345 (777)
+..+++|.|....+.|.|+|++|+||+.++..+ .+||||++++. .++++|+++++++||.|||+|.|. +...+ .
T Consensus 9 G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 88 (138)
T d1ugka_ 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ 88 (138)
T ss_dssp CEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGG
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcc
Confidence 346799999999999999999999999988665 47999999994 368899999999999999999996 44222 2
Q ss_pred CcEEEEEEeecCCCC-CceeEEEEEeCCcccCCC-ccceeeecc
Q 004037 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQ 387 (777)
Q Consensus 346 ~~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~-~~~~W~~L~ 387 (777)
...|+|+|||.|.++ |++||++.|+|+++...+ ....|..+.
T Consensus 89 ~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 89 ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred cceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 357999999999987 999999999999986543 344565554
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.5e-16 Score=152.16 Aligned_cols=116 Identities=26% Similarity=0.395 Sum_probs=97.7
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+ ...+|++++++.||.|||+|.|.+...+ ..
T Consensus 13 ~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~ 92 (157)
T d1uowa_ 13 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 92 (157)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCc
Confidence 35689999999999999999999999999999999999999854 3568999999999999999999987543 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCccc------------CCCccceeeeccC
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQN 388 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~------------~~~~~~~W~~L~~ 388 (777)
..|.|.|||++.++ +++||++.|+|.... ......+|+.|+.
T Consensus 93 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 93 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp CEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred cEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 58999999999987 999999999997642 1233467888764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.5e-16 Score=146.44 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=86.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCCCcee
Q 004037 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (777)
Q Consensus 285 G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~Dd~I 364 (777)
+.|+|+|.+|++|++++ ..||||++++++++.+|++++ +.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCCcCCcce
Confidence 68999999999999876 679999999999999999986 55999999999999863 4689999999998889999
Q ss_pred EEEEEeCCcccCC--CccceeeeccC
Q 004037 365 GDCTINISDLRDG--QRHDMWIPLQN 388 (777)
Q Consensus 365 G~v~I~L~~L~~~--~~~~~W~~L~~ 388 (777)
|++.|+|+++... .....|++|..
T Consensus 76 G~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 76 GTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp EEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred EEEEEEehhhccCCCCCCCeeEECCc
Confidence 9999999998643 34568999964
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=1.8e-16 Score=148.19 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=83.2
Q ss_pred cceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C---eEEEeeeecCCCCCcccceeeEecccCCC-Cc
Q 004037 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG--P---YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (777)
Q Consensus 274 ~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg--~---~k~kTkVi~~TlnP~WnEtF~f~V~~~e~-~~ 347 (777)
..++|.|.+..+.|.|+|++|+||+.++.++.+||||++++. . .+.+|++++++.||.|||+|.|.+...+. ..
T Consensus 4 l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~ 83 (138)
T d1w15a_ 4 LLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEI 83 (138)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTE
T ss_pred EEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCcc
Confidence 457899999999999999999999999999999999999983 2 46789999999999999999999875432 34
Q ss_pred EEEEEEeecCCCC-CceeEEEEEeCCcc
Q 004037 348 VLVIEVRDKDHFV-DDTLGDCTINISDL 374 (777)
Q Consensus 348 ~L~V~V~D~D~~~-Dd~IG~v~I~L~~L 374 (777)
.|.|.|||+|.++ +++||++.|+|...
T Consensus 84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 84 SVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 7999999999987 99999999999864
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=3.2e-16 Score=145.43 Aligned_cols=113 Identities=20% Similarity=0.339 Sum_probs=88.6
Q ss_pred eEEEEEEEEecCCCCC--CCCCCCCcEEEEEeC-----CeEEEeeeecC-CCCCcccceeeEecccCCCCcEEEEEEeec
Q 004037 285 AYARVEVVEASDMKPS--DLNGLADPYVKGQLG-----PYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (777)
Q Consensus 285 G~L~VtVieAk~L~~~--D~~G~sDPYV~v~Lg-----~~k~kTkVi~~-TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~ 356 (777)
..|+|+|++|++|+.. +.++.+||||++++. .++++|+++++ ++||.|||+|.|.+... ....|+|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 4799999999999754 467889999999983 37889998765 57999999999988743 345799999999
Q ss_pred CCCC-CceeEEEEEeCCcccCCCccceeeeccCCC-----CcEEEEEEEEE
Q 004037 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (777)
Q Consensus 357 D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~y~ 401 (777)
|.++ |++||++.++|..+..+. .|++|.+.. .+.|.+++.+.
T Consensus 83 d~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 83 DSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp CTTTCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCcEEEEEEEEEeccCCCC---EEEECCCCCcCCCCCCEEEEEEEEE
Confidence 9997 889999999999997653 588886532 45677777654
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.4e-16 Score=150.04 Aligned_cols=114 Identities=25% Similarity=0.402 Sum_probs=96.0
Q ss_pred CcceeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCC-CC
Q 004037 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (777)
Q Consensus 273 ~~~fsL~y~~~~G~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e-~~ 346 (777)
...++|.|.+..|.|.|+|++|+||+..+..+.+||||++++.+ .+.+|+++++|+||.|||+|.|.+...+ ..
T Consensus 8 ~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~ 87 (145)
T d1dqva2 8 ELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVEN 87 (145)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGS
T ss_pred EEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCC
Confidence 45789999999999999999999999999899999999999965 3678999999999999999999887432 23
Q ss_pred cEEEEEEeecCCCC-CceeEEEEEeCCcccCCCccceeeecc
Q 004037 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (777)
Q Consensus 347 ~~L~V~V~D~D~~~-Dd~IG~v~I~L~~L~~~~~~~~W~~L~ 387 (777)
..|.|.|||++.++ +++||++.|+|+.+... ....|++|.
T Consensus 88 ~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 88 VGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp CCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred CEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 57999999999987 88999999999876432 234566654
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.58 E-value=4.2e-15 Score=136.95 Aligned_cols=107 Identities=15% Similarity=0.353 Sum_probs=87.4
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcccceeeEecccCCCCcEEEEEEeecCCCC
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg~-----~k~kTkVi~~TlnP~WnEtF~f~V~~~e~~~~L~V~V~D~D~~~ 360 (777)
.+.|.++.+..++. .++.+||||++++.+ ...+|+++++|+||+|||+|+|.+.. .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~---~~~l~i~V~d~d--- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT---TCEEEEEEEEET---
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc---ccEEEEEEEEcc---
Confidence 44455555555544 478999999999954 34679999999999999999999974 468999999986
Q ss_pred CceeEEEEEeCCcccC-----CCccceeeeccCCCCcEEEEEEEEEe
Q 004037 361 DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITVLE 402 (777)
Q Consensus 361 Dd~IG~v~I~L~~L~~-----~~~~~~W~~L~~~~~GeI~LsL~y~p 402 (777)
++++|.+.+++..+.. +...+.|++|+ +.|+|++++.|..
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence 7899999999998743 45678999997 5899999999875
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1e-11 Score=113.87 Aligned_cols=95 Identities=24% Similarity=0.338 Sum_probs=72.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeC------CeEEEeee--ecCCCCCcccce-eeEe-cccCCCCcEEEEEEee
Q 004037 286 YARVEVVEASDMKPSDLNGLADPYVKGQLG------PYRFRTKT--QRKTLSPKWHEE-FNIP-ISTWDSPNVLVIEVRD 355 (777)
Q Consensus 286 ~L~VtVieAk~L~~~D~~G~sDPYV~v~Lg------~~k~kTkV--i~~TlnP~WnEt-F~f~-V~~~e~~~~L~V~V~D 355 (777)
.|.|+|++|++|+.+ ..||||++++- ..+++|++ ..+++||.|||+ |.|. +... ....|+|.|||
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D 76 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVME 76 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEEC
Confidence 689999999999864 47999999982 14455554 477999999976 4443 3322 23489999999
Q ss_pred cCCCCCceeEEEEEeCCcccCCCccceeeeccCCCC
Q 004037 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (777)
Q Consensus 356 ~D~~~Dd~IG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (777)
+| |++||++.+||+.+..|. ++++|.+...
T Consensus 77 ~d---~~~lG~~~ipl~~l~~Gy---R~vpL~~~~g 106 (122)
T d2zkmx2 77 EG---NKFLGHRIIPINALNSGY---HHLCLHSESN 106 (122)
T ss_dssp TT---TEEEEEEEEEGGGBCCEE---EEEEEECTTC
T ss_pred CC---CCEEEEEEEEcccCcCCc---eEEEccCCCc
Confidence 76 899999999999998865 5677776443
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.1e-09 Score=102.12 Aligned_cols=117 Identities=15% Similarity=0.226 Sum_probs=83.7
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|+++|+|.+.++.+.+ .++|++..+. .+..+..++||.+++++.||+|||.|.|..+
T Consensus 5 ~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~---~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~ 81 (145)
T d1dqva2 5 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLI---SEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81 (145)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCC---TTCCTTSCEECCCCCSCSSCEEEECCCCCCC
T ss_pred cceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc---cCCccceeecCEEEeCCCCceecceEEEEEe
Confidence 57899999999887766543 2456665552 2344556688999999999999999999888
Q ss_pred CCCCcCcccceeeeecCCc--eee-ceEEecc---CcccccccccccCCCCcccceeeecCC
Q 004037 454 SEKSPKVADNFEPINIEGQ--QET-GIWVHQP---GSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G~--ee~-gi~v~~p---g~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
.+........+...|.++. ... |-..-+. .....+||.+++.+||.++++||....
T Consensus 82 ~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~ 143 (145)
T d1dqva2 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE 143 (145)
T ss_dssp SGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred hhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCC
Confidence 7777666667777776543 333 4332122 123448999999999999999998763
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=8e-10 Score=102.27 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=84.0
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|+++|+|.+.++++.+ .++|++..+. .+..+..++||.+++++.||.|||.|.|..+.
T Consensus 1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~---~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~ 77 (138)
T d1w15a_ 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLY---HAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEE---ETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEe---CCcccCccccceeECCCCCCeECcEEEEEecH
Confidence 5899999999998777654 2345554441 13344566789999999999999999998888
Q ss_pred CCCcCcccceeeeecCC--ceee-ceE-Ee--ccCcccccccccccCCCCcccceeeecCC
Q 004037 455 EKSPKVADNFEPINIEG--QQET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRVPN 509 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~G--~ee~-gi~-v~--~pg~~v~~~w~~~~~~~r~~~~~~~~~~~ 509 (777)
...+.....+.+.|.+. .++. |-. +. ..+.+ .+||.+++.+||+|+++||.+-+
T Consensus 78 ~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 78 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSG-GGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHH-HHHHHHHHHSTTCCEEEEEECBC
T ss_pred HHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCch-HHHHHHHHhCCCCeeeECeEccc
Confidence 88777777788888763 4444 433 21 22333 38999999999999999998754
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.68 E-value=1.3e-09 Score=103.18 Aligned_cols=115 Identities=18% Similarity=0.217 Sum_probs=84.1
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
+.|+|.++++|.+..+++.+ .++|++.++. .+..+..++||.+++++.||+|||.|.|..+
T Consensus 10 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~ 86 (157)
T d1uowa_ 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM---QNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86 (157)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE---ETTEEEEEEECCCCCSCSSCEEEEEEEEECC
T ss_pred eeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe---cCCccccceecccccCCCCcccCCeEEEEec
Confidence 47899999999887776554 2445554441 2334456678999999999999999999988
Q ss_pred CCCCcCcccceeeeecCC--ceee-ceE-Ee--ccCcccccccccccCCCCcccceeeecC
Q 004037 454 SEKSPKVADNFEPINIEG--QQET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~G--~ee~-gi~-v~--~pg~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
..+.......+...|.+. .++. |-. +. ..+.+ .+||..+...||++.++||..-
T Consensus 87 ~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~hW~~~~~~~~~~v~~Wh~L~ 146 (157)
T d1uowa_ 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAE-LRHWSDMLANPRRPIAQWHTLQ 146 (157)
T ss_dssp GGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHH-HHHHHHHHHSTTCCEEEEEECB
T ss_pred HHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChh-HHHHHHHHhCCCCceeEeEeCC
Confidence 887777777788888764 3333 433 32 22333 3899999999999999999865
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=2.3e-08 Score=91.51 Aligned_cols=115 Identities=10% Similarity=0.088 Sum_probs=79.8
Q ss_pred CcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCC
Q 004037 391 IGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 454 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s 454 (777)
+|+|+|+++|.+....+.+ .++|++..+. .+.....++||++++++.||+|||.|.|..+.
T Consensus 1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~ 77 (137)
T d2cm5a1 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK---PDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77 (137)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE---TC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEE---cCCccceeecCEeEcCCCCCccceEEEEEeEH
Confidence 5899999999887776554 2345544441 13345566899999999999999999998877
Q ss_pred CCCcCcccceeeeecC--Cceee-ceE-Eecc-CcccccccccccCCCCcccceeeecC
Q 004037 455 EKSPKVADNFEPINIE--GQQET-GIW-VHQP-GSEVAQTWEPRKGKNRRLDTLVRRVP 508 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~--G~ee~-gi~-v~~p-g~~v~~~w~~~~~~~r~~~~~~~~~~ 508 (777)
.+.......+...+.+ +.++. |-. +... -.+...||.++..+++++.++||..-
T Consensus 78 ~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~ 136 (137)
T d2cm5a1 78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 136 (137)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred HHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceecc
Confidence 7766666667777665 34443 433 3221 11233899999999999999999763
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.37 E-value=4.3e-05 Score=68.97 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=52.8
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
+.|+|+++++|.+....+.+ .++|++..+. ..+.++.||++++++.||+|||.|.|..+
T Consensus 3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~-----~~~~~~~kT~v~~~t~~P~wne~f~f~v~ 77 (130)
T d1dqva1 3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL-----PDRKKKFQTKVHRKTLNPIFNETFQFSVP 77 (130)
T ss_dssp SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECT-----TSTTSCEECCCCCSCSSCEEEEEEEEECC
T ss_pred CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEc-----cCCCceEeceeEcCCCCeeeeeEEEEEEc
Confidence 46788888887776665543 3455554441 12234588999999999999999988877
Q ss_pred CCCCcCcccceeeeecC
Q 004037 454 SEKSPKVADNFEPINIE 470 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~ 470 (777)
..+.......+++.|.+
T Consensus 78 ~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 78 LAELAQRKLHFSVYDFD 94 (130)
T ss_dssp GGGGSSCCCEEEEEECC
T ss_pred hHHcCCCeEEEEEEEcC
Confidence 66655555667887776
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.17 E-value=7.4e-05 Score=66.71 Aligned_cols=76 Identities=8% Similarity=-0.007 Sum_probs=51.4
Q ss_pred cEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-cCC
Q 004037 392 GRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSS 454 (777)
Q Consensus 392 GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~-~~s 454 (777)
|+|+++++|.+...++.+ .++|++..+.+ +..+..++||++++++.||+|||.|.|. .+.
T Consensus 1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~---~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~ 77 (125)
T d2bwqa1 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLP---DRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 77 (125)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEES---SCSGGGEEECCCCSSBSSCEEEEEEEECSCCG
T ss_pred CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeC---CCCCccccccCEEcCCCCCEEccEEEEeeeCh
Confidence 778888888776666543 24455554421 2233456889999999999999998886 566
Q ss_pred CCCcCcccceeeeecC
Q 004037 455 EKSPKVADNFEPINIE 470 (777)
Q Consensus 455 ~~~~kv~~~~e~id~~ 470 (777)
++.......+.+.|.+
T Consensus 78 ~~l~~~~L~i~v~d~~ 93 (125)
T d2bwqa1 78 REFRERMLEITLWDQA 93 (125)
T ss_dssp GGGGGCEEEEEEEEC-
T ss_pred hhcCCCEEEEEEEECC
Confidence 6655555667777765
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.11 E-value=0.00017 Score=65.67 Aligned_cols=77 Identities=12% Similarity=0.113 Sum_probs=53.8
Q ss_pred CcEEEEEEEEEecCCCccc-------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCC
Q 004037 391 IGRLHLAITVLEESAKQGV-------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS 457 (777)
Q Consensus 391 ~GeI~LsL~y~p~s~~lsv-------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~ 457 (777)
.|+|++++.|......+.+ .++|++..|. +..+..+++|++++++.||+|||.|.|..+..+.
T Consensus 12 ~~~l~~sl~y~~~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~----~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l 87 (138)
T d1wfma_ 12 APKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVA----NRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEECCCCSSCCCEEEEEEEE----ETTEEEEEECCCCCCCSSEECSSCEEEECCTTSS
T ss_pred CCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCcCcEEEEEEC----CCCCccceeeeEECCCCCceEeeeEEEEeeehhc
Confidence 5667777777665555433 4566666652 1223345789999999999999999998887777
Q ss_pred cCcccceeeeecCC
Q 004037 458 PKVADNFEPINIEG 471 (777)
Q Consensus 458 ~kv~~~~e~id~~G 471 (777)
......+.+.|.+.
T Consensus 88 ~~~~L~~~V~d~~~ 101 (138)
T d1wfma_ 88 PTATLTLTLRTCDR 101 (138)
T ss_dssp TTCEEEEEEEECCS
T ss_pred cceEEEEEEeeecc
Confidence 66666777877663
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.01 E-value=0.0001 Score=67.42 Aligned_cols=76 Identities=11% Similarity=0.049 Sum_probs=51.9
Q ss_pred CCcEEEEEEEEEecCCCccc----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccC
Q 004037 390 KIGRLHLAITVLEESAKQGV----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 453 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~ 453 (777)
..|+|++++.|.+....+.+ .++|++..+.. .+-++.+|++++++.||+|||.|.|..+
T Consensus 19 ~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~-----~~~~~~kT~~~~~t~~P~wne~f~f~i~ 93 (143)
T d1rsya_ 19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP-----DKKKKFETKVHRKTLNPVFNEQFTFKVP 93 (143)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEET-----TCCSCEECCCCTTCSSCEEEEEEEECCC
T ss_pred cceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcC-----CCCeeEEEEEeccccCcceeeeeEEEEE
Confidence 47888888888776655543 24555544411 1224578999999999999999988876
Q ss_pred CCCCcCcccceeeeecC
Q 004037 454 SEKSPKVADNFEPINIE 470 (777)
Q Consensus 454 s~~~~kv~~~~e~id~~ 470 (777)
..+.......+++.|.+
T Consensus 94 ~~~l~~~~L~i~V~d~d 110 (143)
T d1rsya_ 94 YSELGGKTLVMAVYDFD 110 (143)
T ss_dssp HHHHTTCEEEEEEEECC
T ss_pred eeccCCceEEEEEEEcC
Confidence 65555555567777765
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00038 Score=63.22 Aligned_cols=76 Identities=13% Similarity=0.106 Sum_probs=51.1
Q ss_pred CCcEEEEEEEEEecCCCccc-----------------cCCCcCCcccccCCCccccccccceeccCCCCcccccccccc-
Q 004037 390 KIGRLHLAITVLEESAKQGV-----------------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS- 451 (777)
Q Consensus 390 ~~GeI~LsL~y~p~s~~lsv-----------------~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~- 451 (777)
..|+|+++|+|.+....+.+ .++|++..|. . .+..+.||+++++++||+|||.|.|.
T Consensus 7 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~----~-~~~~~~kT~v~~~t~nP~wne~f~f~~ 81 (138)
T d1ugka_ 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTIL----P-EKKHKVKTRVLRKTLDPAFDETFTFYG 81 (138)
T ss_dssp CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEE----T-TTCSEEECCCCSSCSSCEEEEEEEEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEc----C-CCCEeEeCeeEeCCCCCceeeEEEEee
Confidence 46888898888776665443 2344544441 1 12335789999999999999998875
Q ss_pred cCCCCCcCcccceeeeecC
Q 004037 452 VSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 452 ~~s~~~~kv~~~~e~id~~ 470 (777)
.+..+.......+.+.|.+
T Consensus 82 ~~~~~l~~~~L~~~V~d~d 100 (138)
T d1ugka_ 82 IPYTQIQELALHFTILSFD 100 (138)
T ss_dssp CCSTTGGGCEEEEEEEEEC
T ss_pred eCHHHcccceEEEEEEECC
Confidence 4556666555667777665
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.85 E-value=0.0023 Score=57.09 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=37.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..+.. +.....++||++.+++.||+|||.|.|..+...... ...+.+.|.+
T Consensus 36 ~DpYv~v~l~~---~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~L~i~V~d~d 92 (132)
T d1a25a_ 36 SDPYVKLKLIP---DPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWD 92 (132)
T ss_dssp CCEEEEEEEES---CTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGC-EEEEEEEECC
T ss_pred cCeEEEEEEcc---CCCCccccEEeeecCCCCCccceEEEEEeEccccCC-EEeEEEEecC
Confidence 46777766632 222345688999999999999999888775433322 2346666665
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.72 E-value=0.0017 Score=58.47 Aligned_cols=42 Identities=10% Similarity=-0.018 Sum_probs=30.7
Q ss_pred ccccceeccCCCCccccccccccc-CCCCCcCcccceeeeecC
Q 004037 429 QSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE 470 (777)
Q Consensus 429 kkkKT~vkk~t~nP~~Ne~~~~~~-~s~~~~kv~~~~e~id~~ 470 (777)
.+.||++.+++.||.|||.|.|.. +.++.......+.+.|.+
T Consensus 64 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 106 (142)
T d1rh8a_ 64 YKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD 106 (142)
T ss_dssp HHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEEC
T ss_pred eeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEec
Confidence 357888889999999999988764 444444555567777765
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.22 E-value=0.063 Score=47.29 Aligned_cols=54 Identities=4% Similarity=-0.085 Sum_probs=35.3
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++.++..... .-++++|.++++|+||.|||+|.+.+... . ..++.+.|.+
T Consensus 24 ~dPY~~v~l~~~~~---~~~~~~t~~~kkT~nP~WnE~F~~~v~~~--~--~l~i~V~d~d 77 (123)
T d1bdya_ 24 SQPFCAVKMKEALT---TDRGKTLVQKKPTMYPEWKSTFDAHIYEG--R--VIQIVLMRAA 77 (123)
T ss_dssp CCCEEEEEEEEECC---GGGTTBEEECSCCBCCCTTCEEEEECCTT--C--EEEEEEEEET
T ss_pred CCCEEEEEEcCccc---cccceEEEEeCCCCCcccceEEEEEEccc--c--EEEEEEEEcc
Confidence 68888877732211 12346788899999999999988876432 1 2345555654
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.086 Score=46.35 Aligned_cols=61 Identities=8% Similarity=-0.173 Sum_probs=34.9
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||++..|........+-.++++.++++++||+|||.+++.......+.....+.+.|.+
T Consensus 18 ~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d 78 (122)
T d2zkmx2 18 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 78 (122)
T ss_dssp CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence 4688888774333333333345555578899999998643332222222233457777764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=0.085 Score=45.78 Aligned_cols=54 Identities=6% Similarity=-0.007 Sum_probs=36.4
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 470 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~ 470 (777)
.+||+...+ +..+.+++||.+++++.||.|||.|.+.........+ .+++.|.+
T Consensus 27 ~Dpyv~v~l-----~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L--~v~V~d~d 80 (126)
T d1rlwa_ 27 PDPYVELFI-----STTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVL--EITLMDAN 80 (126)
T ss_dssp CCEEEEEEC-----TTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEE--EEEEEECC
T ss_pred CCcEEEEEE-----CCcccceeEeeecCCCccceeceeeeecccCcccCcE--EEEEEECC
Confidence 578887666 3334456889999999999999998876643333222 35555554
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.21 E-value=0.19 Score=44.15 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=41.2
Q ss_pred CCcEEEEEEEEE---ecCCCccccCCCcCCcccccCCCcccccccccee-ccCCCCcccccccccccCCCCCcCccccee
Q 004037 390 KIGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDI-RESFANETTDKGSFSSVSSEKSPKVADNFE 465 (777)
Q Consensus 390 ~~GeI~LsL~y~---p~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~v-kk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e 465 (777)
..|.|.+.+.-- +........+||+...+ +. .+.+|++ +.+++||+|||.|.|....... . ..++
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~-----~~---~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~-~--L~v~ 76 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTC-----RT---QDQKSNVAEGMGTTPEWNETFIFTVSEGTT-E--LKAK 76 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEES-----SS---CEEECCCCTTCCSSCEEEEEEEEEEESSCC-E--EEEE
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEE-----ee---eeEEEEEEecCCCcEEEeeEEEEEEcCccc-e--EEEE
Confidence 357776666422 22222334678877665 22 1244544 4578999999998887643222 2 3467
Q ss_pred eeecCC
Q 004037 466 PINIEG 471 (777)
Q Consensus 466 ~id~~G 471 (777)
+.|.+.
T Consensus 77 V~d~d~ 82 (136)
T d1wfja_ 77 IFDKDV 82 (136)
T ss_dssp ECCSSS
T ss_pred EEEecC
Confidence 777663
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.17 E-value=0.13 Score=45.62 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=35.5
Q ss_pred cCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeeeecCC
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 471 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~G 471 (777)
.+||+...+ +. ++.+|++++++.||+|||.|.|...+.. ...+++.|.+.
T Consensus 27 ~dpyv~v~~-----~~---~~~kT~v~~~t~nP~wne~f~f~~~~~~----~l~~~V~d~d~ 76 (133)
T d2nq3a1 27 PSPYVEVTV-----DG---QSKKTEKCNNTNSPKWKQPLTVIVTPVS----KLHFRVWSHQT 76 (133)
T ss_dssp CCEEEEEEE-----TT---EEEECCCCSSCSSCEEEEEEEEEECTTC----EEEEEEEECCS
T ss_pred cCeEEEEEE-----CC---eEEeeEEEEecccEEEcceEEEEEEecc----eeEEEEEEccC
Confidence 578877665 22 2478899999999999999888765432 24577777663
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.88 E-value=0.19 Score=43.62 Aligned_cols=69 Identities=13% Similarity=0.047 Sum_probs=41.5
Q ss_pred CcEEEEEEEEEe---cCCCccccCCCcCCcccccCCCccccccccceeccCCCCcccccccccccCCCCCcCcccceeee
Q 004037 391 IGRLHLAITVLE---ESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 467 (777)
Q Consensus 391 ~GeI~LsL~y~p---~s~~lsv~d~~~k~~L~~~~~g~~~vkkkKT~vkk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~i 467 (777)
-|.|.+.+--.. ........+||+..++ +. .+.+|++.+++.||+|||.|.|..+... . ...++..
T Consensus 5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~-----~~---~~~~T~~~~~t~nP~wne~f~f~v~~~~-~--~L~i~V~ 73 (126)
T d2ep6a1 5 VGILQVKVLKAADLLAADFSGKSDPFCLLEL-----GN---DRLQTHTVYKNLNPEWNKVFTFPIKDIH-D--VLEVTVF 73 (126)
T ss_dssp SEEEEEEEEEEESCCCSSSSSCCCEEEEEEE-----TT---EEEECCCCSSCSSCCCCEEEEEEESCTT-C--EEEEEEE
T ss_pred cEEEEEEEEEeECCCCCCCCCCcCeEEEEEc-----CC---eEEEEEeeCCceeEEEEEEEEEEEeccC-c--eeEEEEE
Confidence 466655553211 1112223577877666 22 3478888899999999999888764322 2 2346666
Q ss_pred ecC
Q 004037 468 NIE 470 (777)
Q Consensus 468 d~~ 470 (777)
|.+
T Consensus 74 d~~ 76 (126)
T d2ep6a1 74 DED 76 (126)
T ss_dssp EEE
T ss_pred Ecc
Confidence 654
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.49 E-value=0.17 Score=44.52 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=36.6
Q ss_pred cCCCcCCcccccCCCcccccccccee-ccCCCCcccccccccccCCCCCcCcccceeeeecC--Cceee
Q 004037 410 DSPCDGGTLNKEGMGNKEDQSNKEDI-RESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET 475 (777)
Q Consensus 410 ~d~~~k~~L~~~~~g~~~vkkkKT~v-kk~t~nP~~Ne~~~~~~~s~~~~kv~~~~e~id~~--G~ee~ 475 (777)
.+||++.++.... ..-.+++|++ +++++||.|||+|.|......... ..+++.|.+ |.++.
T Consensus 27 ~DPyV~v~l~g~~---~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~--L~~~V~D~d~~~~d~~ 90 (131)
T d1qasa2 27 VDPKVIVEIHGVG---RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLAL--VRFMVEDYDSSSKNDF 90 (131)
T ss_dssp CCEEEEEEEESST---TTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCE--EEEEEEECCTTTCCEE
T ss_pred cCeEEEEEEccCC---CCcEEEEEEEEecccCCceEEEEEEEEEEcchhce--EEEEEEEecCCCCCcE
Confidence 5788877762111 1123456664 567789999999877665444433 346777766 44444
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