Citrus Sinensis ID: 004039

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------
MDAEEKAAVKGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSYIDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPGEDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTESATLTGK
ccHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccEEEEccEEEEEEEEEEEEEEEEEccccEEEEEccccccccEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccccccccc
ccHHHHHHcccccEEccEcccccccEEEEEEcccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcHHHccccccHHHcccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHccccccEEcHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccEEEEcccEEEEEEEEEEEEEEEcccccEEEEccHHHccccEHcccccccHcccEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccc
MDAEEKAAVkggeismsekknvngSEVVIKissdespkdnvdarnskgssseattepvtagfaaksvpasspspeirfasspnkppkipttneaATLARRRSLARSvyskpksrfgepsyiddnafdehvdlsrrdqvgvnspyrtsfsraspnsksglsartnsitpktplmasprgpgeddeEIYKKVKLIKEkrnkvkpiVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEaervgrspsfgqlsiknkkkgkesektKIIDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALdesiedggeQADKEITSEMEARAAAFYIFRNVaqhdskyieEEDLLRFMIKEEVDLvfpliegwdkgqidrkALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVmhpfdvgdrcvvdgVPLLVEEMNILTTIFLKLSnekisypnsvlatkpisnynrspdmsdtVEFSIAFATPIEKIGMLKERIKLYLEnnslhwhpnhSVVVKEIENVNKIKIALYCNHTMnfqefgeknNRRSALITELKKFFEELEINysllpqqvhlhhigtesatltgk
mdaeekaavkggeismsekknvngsevvikissdespkdnvdarnskgssseattepvtaGFAAKSVPASSPSPEirfasspnkppkipttneaatlarrrslarsvyskpksrfgepsyiddNAFDEHVDlsrrdqvgvnspyrtsfsraspnsksglsartnsitpktplmasprgpgeddeEIYKKVKlikekrnkvkpIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAervgrspsfgqlsiknkkkgkesektkiidmgkvhkmkqekVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLiegwdkgqidrKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYsllpqqvhlhhigtesatltgk
MDAEEKAAVKGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFaaksvpasspspEIRFASSPNKPPKIPTTNEaatlarrrslarsVYSKPKSRFGEPSYIDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPGEDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFlwllktlllkilASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLsiknkkkgkesektkiiDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLvtaivvvvtiivWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTESATLTGK
*****************************************************************************************************************************************************************************************IYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALI*******************************************KVSMWTMKVLVDAVMNSGLST**************************RAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISN********DTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIG*********
******************************************************************************************************************************************************************************************YKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSG*******************************************************VLVDAVMNSG***************************EARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQV***************
**********GGEISMSEKKNVNGSEVVIKISSDE**********************VTAGFAA**************ASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSYIDDNAFDEHVDLSRRDQVGVNSP*****************ARTNSITPKTP***********DEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSI**********KTKIIDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTESATLTGK
************EISMSEKKNVNGSEVVIKIS**************************************************************************************************************************************************PGEDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEA***************************IIDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHI**********
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MDAEEKAAVKGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSYIDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPGEDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTESATLTGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query777 2.2.26 [Sep-21-2011]
Q9LYG9734 Mechanosensitive ion chan yes no 0.926 0.980 0.608 0.0
Q84M97742 Mechanosensitive ion chan no no 0.945 0.990 0.563 0.0
Q9LPG3881 Mechanosensitive ion chan no no 0.785 0.692 0.406 1e-138
Q9LH74881 Mechanosensitive ion chan no no 0.722 0.636 0.437 1e-134
F4IME2908 Mechanosensitive ion chan no no 0.754 0.645 0.394 1e-134
Q9SYM1856 Mechanosensitive ion chan no no 0.759 0.689 0.415 1e-131
F4IME1849 Mechanosensitive ion chan no no 0.737 0.674 0.407 1e-123
O74839 1011 Uncharacterized MscS fami yes no 0.646 0.496 0.209 1e-25
O14050 840 Uncharacterized MscS fami no no 0.516 0.477 0.203 4e-23
O52401286 Small-conductance mechano yes no 0.177 0.482 0.258 0.0001
>sp|Q9LYG9|MSL10_ARATH Mechanosensitive ion channel protein 10 OS=Arabidopsis thaliana GN=MSL10 PE=1 SV=1 Back     alignment and function desciption
 Score =  882 bits (2279), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/759 (60%), Positives = 574/759 (75%), Gaps = 39/759 (5%)

Query: 16  MSEKKNVNGS----EVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFAAKSVPAS- 70
           M+E+K+ NG     +VVI +  +E+ +     R+ + +S E+           K VP S 
Sbjct: 1   MAEQKSSNGGGGGGDVVINVPVEEASR-----RSKEMASPES----------EKGVPFSK 45

Query: 71  SPSPEI-RFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSY-IDDNAFDE 128
           SPSPEI +   SPNKPP+ P  N    L +R+S ARSVYSKPKSRF +PS  +D +  +E
Sbjct: 46  SPSPEISKLVGSPNKPPRAPNQNNVG-LTQRKSFARSVYSKPKSRFVDPSCPVDTSILEE 104

Query: 129 HVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPGEDDEEIYK 188
            V    R+Q+G       SFSRASPN+KS  S    S  P TP  +      ++DEEIYK
Sbjct: 105 EV----REQLGAG----FSFSRASPNNKSNRSV--GSPAPVTP--SKVVVEKDEDEEIYK 152

Query: 189 KVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIF 248
           KVKL +E R+K+  + LIE  FF   +  LVASLT + L+    WGLEVWKWC+LV+VIF
Sbjct: 153 KVKLNREMRSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIF 212

Query: 249 SGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVK 308
           SGMLVTNW M  IVFLIE NFLLR+KVLYFVHGLKK V+VFIWL L+L+ W+LLF+H VK
Sbjct: 213 SGMLVTNWFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVK 272

Query: 309 RSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQ 368
           RS  ATK+L  I+ TL+++  GAF WL+KTLLLKILA+NF+V  FFDRIQ+SVFHQYVLQ
Sbjct: 273 RSPAATKVLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQ 332

Query: 369 TLSGPALIEEAERVGRSPSFGQLSIKNK-KKGKESEKTKIIDMGKVHKMKQEKVSMWTMK 427
           TLSG  L+EEAERVGR PS G LS     KKG   EK K+IDMGKVHKMK+EKVS WTM+
Sbjct: 333 TLSGLPLMEEAERVGREPSTGHLSFATVVKKGTVKEK-KVIDMGKVHKMKREKVSAWTMR 391

Query: 428 VLVDAVMNSGLSTISNALDES-IEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIE 486
           VL++AV  SGLSTIS+ LDE+   +G EQAD+EITSEMEA AAA+++FRNVAQ    YIE
Sbjct: 392 VLMEAVRTSGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYIE 451

Query: 487 EEDLLRFMIKEEVDLVFPLIEGW-DKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVK 545
           EEDLLRFMIKEEVDLVFPL +G  + G+I RKA T+WVVKVY  R+ALAH+L DTKTAVK
Sbjct: 452 EEDLLRFMIKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKTAVK 511

Query: 546 QLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFV 605
           QL+KLVTAI++VVT+++WLLL+ +ATTKV++F S+Q VA AF+ G+TC+ +FE+I+FVFV
Sbjct: 512 QLNKLVTAILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFV 571

Query: 606 MHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSD 665
           MHP+DVGDRCVVDGV +LVEEMN+LTT+FLKL+NEK+ YPN+VLATKPISNY RSP+M +
Sbjct: 572 MHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPNMGE 631

Query: 666 TVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTM 725
           TVEFSI+F+TP+ KI  LKERI  YLE N  HW P HSVVVKEIEN+NK+K+ALY +HT+
Sbjct: 632 TVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTI 691

Query: 726 NFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHL 764
            FQE  E+N RR+ L   +K+  E+L I+Y+LLPQ ++L
Sbjct: 692 TFQENRERNLRRTELSLAIKRMLEDLHIDYTLLPQDINL 730
Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84M97|MSL9_ARATH Mechanosensitive ion channel protein 9 OS=Arabidopsis thaliana GN=MSL9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPG3|MSL4_ARATH Mechanosensitive ion channel protein 4 OS=Arabidopsis thaliana GN=MSL4 PE=3 SV=1 Back     alignment and function description
>sp|Q9LH74|MSL5_ARATH Mechanosensitive ion channel protein 5 OS=Arabidopsis thaliana GN=MSL5 PE=2 SV=1 Back     alignment and function description
>sp|F4IME2|MSL8_ARATH Mechanosensitive ion channel protein 8 OS=Arabidopsis thaliana GN=MSL8 PE=2 SV=2 Back     alignment and function description
>sp|Q9SYM1|MSL6_ARATH Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1 Back     alignment and function description
>sp|F4IME1|MSL7_ARATH Mechanosensitive ion channel protein 7 OS=Arabidopsis thaliana GN=MSL7 PE=3 SV=1 Back     alignment and function description
>sp|O74839|YC1B_SCHPO Uncharacterized MscS family protein C1183.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1183.11 PE=1 SV=1 Back     alignment and function description
>sp|O14050|YEYH_SCHPO Uncharacterized MscS family protein C2C4.17c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.17c PE=3 SV=1 Back     alignment and function description
>sp|O52401|MSCS_EDWI9 Small-conductance mechanosensitive channel OS=Edwardsiella ictaluri (strain 93-146) GN=mscS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query777
343887312777 mechanosensitive ion channel domain-cont 1.0 1.0 0.997 0.0
343887313694 mechanosensitive ion channel domain-cont 0.886 0.992 0.659 0.0
255550139762 conserved hypothetical protein [Ricinus 0.966 0.985 0.629 0.0
356509838845 PREDICTED: uncharacterized protein At5g1 0.975 0.897 0.629 0.0
356514713767 PREDICTED: uncharacterized protein At5g1 0.967 0.980 0.617 0.0
297811331732 mechanosensitive ion channel domain-cont 0.926 0.983 0.622 0.0
357465835754 Fgenesh protein [Medicago truncatula] gi 0.909 0.937 0.650 0.0
15239859734 mechanosensitive channel of small conduc 0.926 0.980 0.608 0.0
224092103622 predicted protein [Populus trichocarpa] 0.792 0.990 0.707 0.0
357465825772 Fgenesh protein [Medicago truncatula] gi 0.967 0.974 0.611 0.0
>gi|343887312|dbj|BAK61858.1| mechanosensitive ion channel domain-containing protein [Citrus unshiu] Back     alignment and taxonomy information
 Score = 1587 bits (4108), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/777 (99%), Positives = 775/777 (99%)

Query: 1   MDAEEKAAVKGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTA 60
           MDAEEKAAV GGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTA
Sbjct: 1   MDAEEKAAVNGGEISMSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTA 60

Query: 61  GFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSY 120
           GFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSY
Sbjct: 61  GFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAATLARRRSLARSVYSKPKSRFGEPSY 120

Query: 121 IDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPG 180
           IDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPG
Sbjct: 121 IDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPG 180

Query: 181 EDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKW 240
           EDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKW
Sbjct: 181 EDDEEIYKKVKLIKEKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKW 240

Query: 241 CLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWV 300
           CLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWV
Sbjct: 241 CLLVLVIFSGMLVTNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWV 300

Query: 301 LLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQES 360
           LLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQES
Sbjct: 301 LLFDHGVKRSKLATKILDYISWTLVTVQIGAFLWLLKTLLLKILASNFHVTRFFDRIQES 360

Query: 361 VFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHKMKQEK 420
           VFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHKMKQEK
Sbjct: 361 VFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGKVHKMKQEK 420

Query: 421 VSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQH 480
           VSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQH
Sbjct: 421 VSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQH 480

Query: 481 DSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDT 540
           DSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDT
Sbjct: 481 DSKYIEEEDLLRFMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDT 540

Query: 541 KTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAI 600
           KTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAI
Sbjct: 541 KTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAI 600

Query: 601 IFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRS 660
           IFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRS
Sbjct: 601 IFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRS 660

Query: 661 PDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALY 720
           PDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALY
Sbjct: 661 PDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALY 720

Query: 721 CNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTESATLTGK 777
           CNHTMNFQEFGEKNNRRSALITELKK FEELEINYSLLPQQVHLHHIGTESATLTGK
Sbjct: 721 CNHTMNFQEFGEKNNRRSALITELKKIFEELEINYSLLPQQVHLHHIGTESATLTGK 777

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|343887313|dbj|BAK61859.1| mechanosensitive ion channel domain-containing protein [Citrus unshiu] Back     alignment and taxonomy information
>gi|255550139|ref|XP_002516120.1| conserved hypothetical protein [Ricinus communis] gi|223544606|gb|EEF46122.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356509838|ref|XP_003523652.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max] Back     alignment and taxonomy information
>gi|356514713|ref|XP_003526048.1| PREDICTED: uncharacterized protein At5g12080-like [Glycine max] Back     alignment and taxonomy information
>gi|297811331|ref|XP_002873549.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319386|gb|EFH49808.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357465835|ref|XP_003603202.1| Fgenesh protein [Medicago truncatula] gi|355492250|gb|AES73453.1| Fgenesh protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15239859|ref|NP_196769.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|30683939|ref|NP_850810.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|186522320|ref|NP_001119212.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|75181076|sp|Q9LYG9.1|MSL10_ARATH RecName: Full=Mechanosensitive ion channel protein 10; AltName: Full=Mechanosensitive channel of small conductance-like 10; AltName: Full=MscS-Like protein 10; Short=AtMSL10 gi|7573373|emb|CAB87679.1| putative protein [Arabidopsis thaliana] gi|9759375|dbj|BAB10026.1| unnamed protein product [Arabidopsis thaliana] gi|18700073|gb|AAL77649.1| AT5g12080/MXC9_3 [Arabidopsis thaliana] gi|25090179|gb|AAN72247.1| At5g12080/MXC9_3 [Arabidopsis thaliana] gi|227204347|dbj|BAH57025.1| AT5G12080 [Arabidopsis thaliana] gi|332004376|gb|AED91759.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004377|gb|AED91760.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] gi|332004378|gb|AED91761.1| mechanosensitive channel of small conductance-like 10 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224092103|ref|XP_002309474.1| predicted protein [Populus trichocarpa] gi|222855450|gb|EEE92997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357465825|ref|XP_003603197.1| Fgenesh protein [Medicago truncatula] gi|355492245|gb|AES73448.1| Fgenesh protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query777
TAIR|locus:2143069734 MSL10 "mechanosensitive channe 0.868 0.919 0.591 5.8e-208
TAIR|locus:2180811742 MSL9 "mechanosensitive channel 0.944 0.989 0.528 3.6e-199
TAIR|locus:2202965856 MSL6 "mechanosensitive channel 0.458 0.415 0.451 8.1e-125
TAIR|locus:2827671849 AT2G17000 "AT2G17000" [Arabido 0.459 0.420 0.439 2.6e-113
TAIR|locus:2024927881 MSL4 "mechanosensitive channel 0.685 0.604 0.377 5e-89
TAIR|locus:2099382881 MSL5 "mechanosensitive channel 0.683 0.602 0.372 4.9e-85
DICTYBASE|DDB_G0277253870 DDB_G0277253 "mechanosensitive 0.418 0.373 0.258 1.7e-32
ASPGD|ASPL0000007479 943 AN6053 [Emericella nidulans (t 0.652 0.537 0.217 1.2e-21
UNIPROTKB|G4NH50 952 MGG_03937 "Serine/threonine pr 0.382 0.311 0.245 4.8e-20
POMBASE|SPAC2C4.17c 840 SPAC2C4.17c "MS ion channel pr 0.427 0.395 0.201 2.6e-18
TAIR|locus:2143069 MSL10 "mechanosensitive channel of small conductance-like 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2011 (713.0 bits), Expect = 5.8e-208, P = 5.8e-208
 Identities = 409/691 (59%), Positives = 499/691 (72%)

Query:    77 RFASSPNKPPKIPTTNEXXXXXXXXXXXXXVYSKPKSRFGEPSY-IDDNAFDEHVDLSRR 135
             +   SPNKPP+ P  N              VYSKPKSRF +PS  +D +  +E V    R
Sbjct:    53 KLVGSPNKPPRAPNQNNVGLTQRKSFARS-VYSKPKSRFVDPSCPVDTSILEEEV----R 107

Query:   136 DQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMASPRGPGEDDEEIYKKVKLIKE 195
             +Q+G       SFSRASPN+KS  S    S  P TP         ++DEEIYKKVKL +E
Sbjct:   108 EQLGAGF----SFSRASPNNKSNRSV--GSPAPVTPSKVVVEK--DEDEEIYKKVKLNRE 159

Query:   196 KRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLVTN 255
              R+K+  + LIE  FF   +  LVASLT + L+    WGLEVWKWC+LV+VIFSGMLVTN
Sbjct:   160 MRSKISTLALIESAFFVVILSALVASLTINVLKHHTFWGLEVWKWCVLVMVIFSGMLVTN 219

Query:   256 WVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLALVLITWVLLFDHGVKRSKLATK 315
             W M  IVFLIE NFLLR+KVLYFVHGLKK V+VFIWL L+L+ W+LLF+H VKRS  ATK
Sbjct:   220 WFMRLIVFLIETNFLLRRKVLYFVHGLKKSVQVFIWLCLILVAWILLFNHDVKRSPAATK 279

Query:   316 ILDYISWTLVTVQIGAFXXXXXXXXXXXXASNFHVTRFFDRIQESVFHQYVLQTLSGPAL 375
             +L  I+ TL+++  GAF            A+NF+V  FFDRIQ+SVFHQYVLQTLSG  L
Sbjct:   280 VLKCITRTLISILTGAFFWLVKTLLLKILAANFNVNNFFDRIQDSVFHQYVLQTLSGLPL 339

Query:   376 IEEAERVGRSPSFGQLXXXXXXXXXXXXXXXXXDMGKVHKMKQEKVSMWTMKVLVDAVMN 435
             +EEAERVGR PS G L                 DMGKVHKMK+EKVS WTM+VL++AV  
Sbjct:   340 MEEAERVGREPSTGHLSFATVVKKGTVKEKKVIDMGKVHKMKREKVSAWTMRVLMEAVRT 399

Query:   436 SGLSTISNALDESIE-DGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLRFM 494
             SGLSTIS+ LDE+   +G EQAD+EITSEMEA AAA+++FRNVAQ    YIEEEDLLRFM
Sbjct:   400 SGLSTISDTLDETAYGEGKEQADREITSEMEALAAAYHVFRNVAQPFFNYIEEEDLLRFM 459

Query:   495 IKEEVDLVFPLIEGW-DKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLXXX 553
             IKEEVDLVFPL +G  + G+I RKA T+WVVKVY  R+ALAH+L DTKTAVKQL+KL   
Sbjct:   460 IKEEVDLVFPLFDGAAETGRITRKAFTEWVVKVYTSRRALAHSLNDTKTAVKQLNKLVTA 519

Query:   554 XXXXXXXXXWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGD 613
                      WLLL+ +ATTKV++F S+Q VA AF+ G+TC+ +FE+I+FVFVMHP+DVGD
Sbjct:   520 ILMVVTVVIWLLLLEVATTKVLLFFSTQLVALAFIIGSTCKNLFESIVFVFVMHPYDVGD 579

Query:   614 RCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAF 673
             RCVVDGV +LVEEMN+LTT+FLKL+NEK+ YPN+VLATKPISNY RSP+M +TVEFSI+F
Sbjct:   580 RCVVDGVAMLVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPNMGETVEFSISF 639

Query:   674 ATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEK 733
             +TP+ KI  LKERI  YLE N  HW P HSVVVKEIEN+NK+K+ALY +HT+ FQE  E+
Sbjct:   640 STPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRER 699

Query:   734 NNRRSALITELKKFFEELEINYSLLPQQVHL 764
             N RR+ L   +K+  E+L I+Y+LLPQ ++L
Sbjct:   700 NLRRTELSLAIKRMLEDLHIDYTLLPQDINL 730
GO:0005634 "nucleus" evidence=ISM
GO:0016020 "membrane" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0008381 "mechanically-gated ion channel activity" evidence=IDA;IMP
GO:0050982 "detection of mechanical stimulus" evidence=IMP
GO:0006820 "anion transport" evidence=IDA
TAIR|locus:2180811 MSL9 "mechanosensitive channel of small conductance-like 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202965 MSL6 "mechanosensitive channel of small conductance-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827671 AT2G17000 "AT2G17000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024927 MSL4 "mechanosensitive channel of small conductance-like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099382 MSL5 "mechanosensitive channel of small conductance-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277253 DDB_G0277253 "mechanosensitive ion channel domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007479 AN6053 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NH50 MGG_03937 "Serine/threonine protein kinase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPAC2C4.17c SPAC2C4.17c "MS ion channel protein 2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LYG9MSL10_ARATHNo assigned EC number0.60860.92660.9809yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__1186__AT5G12080.1
annotation not avaliable (732 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query777
pfam00924202 pfam00924, MS_channel, Mechanosensitive ion channe 6e-18
COG0668316 COG0668, MscS, Small-conductance mechanosensitive 1e-16
PRK10334286 PRK10334, PRK10334, mechanosensitive channel MscS; 0.002
>gnl|CDD|201506 pfam00924, MS_channel, Mechanosensitive ion channel Back     alignment and domain information 
 Score = 82.6 bits (205), Expect = 6e-18
 Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 4/206 (1%)

Query: 550 LVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPF 609
           ++  +++VV I++ L  +G+  + ++  L +  +A  F        +   II +F   PF
Sbjct: 1   ILKYLIIVVGILIVLSYLGVNVSALLAGLGALGLALGFALQDLVSNLVSGIIILF-EKPF 59

Query: 610 DVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEF 669
            +GD   +  V   VE++ I +T         ++ PNS + T  I N +RSP     V  
Sbjct: 60  KIGDWIEIGDVEGTVEDIGIRSTTIRTFDGRLVTIPNSKILTSNIINLSRSPTRRVEVSI 119

Query: 670 SIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQE 729
            +A+++  +K+  + E +K     + L        VV      + +   +          
Sbjct: 120 GVAYSSDPKKLEKVIEILKEAAYEHPLVLKDPEPPVVFGEFGDSSLNFEVRV-WVKT--L 176

Query: 730 FGEKNNRRSALITELKKFFEELEINY 755
            GE  N RS L   +KK  EE  I  
Sbjct: 177 PGEYFNVRSELNLRIKKALEENGIEI 202

Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins. Length = 202
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|182386 PRK10334, PRK10334, mechanosensitive channel MscS; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 777
KOG4629714 consensus Predicted mechanosensitive ion channel [ 100.0
PRK10334286 mechanosensitive channel MscS; Provisional 100.0
PRK112811113 hypothetical protein; Provisional 100.0
PRK109291109 putative mechanosensitive channel protein; Provisi 100.0
PF00924206 MS_channel: Mechanosensitive ion channel; InterPro 100.0
PRK11465741 putative mechanosensitive channel protein; Provisi 99.98
COG3264835 Small-conductance mechanosensitive channel [Cell e 99.97
COG0668316 MscS Small-conductance mechanosensitive channel [C 99.97
COG5126160 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [S 92.82
KOG0044193 consensus Ca2+ sensor (EF-Hand superfamily) [Signa 92.18
PF0003629 EF-hand_1: EF hand; InterPro: IPR018248 Many calci 91.87
PF1349966 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 91.21
cd0005267 EH Eps15 homology domain; found in proteins implic 90.73
cd0502289 S-100A13 S-100A13: S-100A13 domain found in protei 90.18
cd0502693 S-100Z S-100Z: S-100Z domain found in proteins sim 88.57
cd0502389 S-100A11 S-100A11: S-100A11 domain found in protei 88.19
cd0021388 S-100 S-100: S-100 domain, which represents the la 88.05
cd0503088 calgranulins Calgranulins: S-100 domain found in p 87.92
smart0002796 EH Eps15 homology domain. Pair of EF hand motifs t 87.74
KOG0027151 consensus Calmodulin and related proteins (EF-Hand 87.6
cd0502988 S-100A6 S-100A6: S-100A6 domain found in proteins 86.69
cd0502592 S-100A1 S-100A1: S-100A1 domain found in proteins 85.54
cd0005163 EFh EF-hand, calcium binding motif; A diverse supe 83.86
cd0503194 S-100A10_like S-100A10_like: S-100A10 domain found 82.77
KOG0034187 consensus Ca2+/calmodulin-dependent protein phosph 82.5
PRK12309391 transaldolase/EF-hand domain-containing protein; P 82.27
PF1383354 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 82.12
PTZ00184149 calmodulin; Provisional 81.22
PTZ00183158 centrin; Provisional 80.89
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-101  Score=887.18  Aligned_cols=701  Identities=41%  Similarity=0.692  Sum_probs=606.4

Q ss_pred             ccccccCCCCcEEEEcCCCCCCCCcccccCCCCCCCCCCCCCcccccccccCCCCCCCcCccCCCCCCCCCCCCCchhhh
Q 004039           16 MSEKKNVNGSEVVIKISSDESPKDNVDARNSKGSSSEATTEPVTAGFAAKSVPASSPSPEIRFASSPNKPPKIPTTNEAA   95 (777)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~   95 (777)
                      |.|.+.+||.|+.++..+++..++.      +.+  ++          ..-+|  .| |+++      +|++.|-+.   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~----------~l~~~--~~-p~~~------~~~~~~~~~---   50 (714)
T KOG4629|consen    1 MNEHRRSNGQELSYNVWDEEKSRAS------QIA--ES----------SLDIE--SP-PNSS------SPIFTPVSR---   50 (714)
T ss_pred             CCcccccCCCCCccccCCccccccc------hhh--he----------eccCC--CC-CCCC------CCceeeccc---
Confidence            6778899999999999999776522      111  11          11122  12 3333      667777665   


Q ss_pred             hhhhccccccccCCCCCCCCCCCCC-CCCCccccccccccccccCcCCCCCCCCCCCCCCCCCCCCcccCccCCCCCCCC
Q 004039           96 TLARRRSLARSVYSKPKSRFGEPSY-IDDNAFDEHVDLSRRDQVGVNSPYRTSFSRASPNSKSGLSARTNSITPKTPLMA  174 (777)
Q Consensus        96 ~~~~~~~~~~~~~~k~ksr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (777)
                      ..+||+++.++.|++++.||.|+-+ .--+..++.     +.++...+..| .++++.|+++... +++  .+..+...+
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~t~~~~~-----~~~~~~~~~s~-~f~p~~~~~~n~~-~~~--~~~~s~~~a  121 (714)
T KOG4629|consen   51 GRVRRRSLPYILYSQEELRRTEYGETVRCTSRKMP-----SMIFFASKRSR-DFDPAEPNNRNRF-SNS--GETTSGELA  121 (714)
T ss_pred             chhhhccccceecccccccccCCcceEEeccccCh-----Hhhhhhhhccc-ccCCCCCCCCCcc-cCc--ccccccccc
Confidence            6899999999999999999999866 332222211     22333333444 5677777777321 111  111112212


Q ss_pred             CCCCCCCCCHHHHHhhHHHH-HhhcCCCcchhhHHHHHHHHHHHHhhcccccccccceeeehhhHHHHHHHHHHHHhHHH
Q 004039          175 SPRGPGEDDEEIYKKVKLIK-EKRNKVKPIVLIEWIFFGCTVGCLVASLTWDELEKSVIWGLEVWKWCLLVLVIFSGMLV  253 (777)
Q Consensus       175 ~~~~~~d~de~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~w~~~lw~W~~~~~v~~~G~lv  253 (777)
                      .+  ++|++|+++.+..+.. .++.++.++.+++|+.+++++..|+|+|.|........|++..|+|++.+++..||+|+
T Consensus       122 ~~--~~~~e~~~~~~~~l~~~~~~~~~~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv  199 (714)
T KOG4629|consen  122 PS--EKDEEESIFSEEKLPDETRRSLLSSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLV  199 (714)
T ss_pred             CC--cccccccccchhccchhhhhcccccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHH
Confidence            11  1266667777777744 55578899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHheeeEEEEeccccccceeeeeeeccchhhHHHHHHH-HHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHHHHH
Q 004039          254 TNWVMHFIVFLIEKNFLLRKKVLYFVHGLKKIVKVFIWLA-LVLITWVLLFDHGVKRSKLATKILDYISWTLVTVQIGAF  332 (777)
Q Consensus       254 ~~w~~~i~vflie~nfl~~kk~lyfv~~l~~~v~~~~W~~-~~l~~~~~l~~~~v~~~~~~~~~l~~v~kiL~~~lv~a~  332 (777)
                      +.|++.+++|+++.|++.|++++||++|+++.+|.|+|++ +++++|..+|+..+.+....+ .+.+++++ +|++++++
T Consensus       200 ~~~~~~~vvf~~~~n~~~r~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~  277 (714)
T KOG4629|consen  200 SSWFAALVVFLIESNFLRRKKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEF  277 (714)
T ss_pred             HhhHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHH
Confidence            9999999999999999999999999999999999999999 999999999999887765545 88899999 99999999


Q ss_pred             HHHHHHHHHHHHHhhcchhhhHHHHHHhhhhHHHHHHhcCCcchHHHhhcCCCCCCCCccccccccCCCcccccccchhh
Q 004039          333 LWLLKTLLLKILASNFHVTRFFDRIQESVFHQYVLQTLSGPALIEEAERVGRSPSFGQLSIKNKKKGKESEKTKIIDMGK  412 (777)
Q Consensus       333 ~~l~ek~liq~iA~sfH~~~y~dRI~es~~~~~~L~~Ls~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~~~~  412 (777)
                      +|++||+++|++|++||+++|++||||++|+||+|++||+||+   .+++||. +.++..+.......+  +.. +++++
T Consensus       278 ~~lv~ti~~kv~as~f~~s~~~~rI~e~~f~q~~l~~Lsg~p~---~e~~gr~-s~~~~~~s~~~~r~~--s~~-i~~~~  350 (714)
T KOG4629|consen  278 MWLVKTILMKVIASSFHRSTYFSRIQESVFTQEVLETLSGPPR---EEDVGRE-STFRAIFSPGLSRSG--SAK-IGMDK  350 (714)
T ss_pred             HhhchhhhhHHHHHHHhHHHHHhhcchhhhhHHHHHHhcCCcc---ccccccc-ccceeeccccccchh--hcc-cccch
Confidence            9999999999999999999999999999999999999999999   4446775 323433333322221  112 78899


Q ss_pred             hhcccccccchhhhHhhHHhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHHHhccCCCccccHHHHHh
Q 004039          413 VHKMKQEKVSMWTMKVLVDAVMNSGLSTISNALDESIEDGGEQADKEITSEMEARAAAFYIFRNVAQHDSKYIEEEDLLR  492 (777)
Q Consensus       413 l~k~~~~~~sa~~~~~l~~~~~~~~l~ti~~~l~~~~~~~~~~~~~~i~s~~~A~alAr~If~~~~~~g~~~l~~eDl~~  492 (777)
                      +|++++.++++|+|+.+++.+...|+++++..++....  ......+++|+++|+++|++||.+++.||..++++||+.+
T Consensus       351 l~~~~~~~~sa~~~~~~~~~~~~~~~t~l~~~~~~s~~--~~~~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~  428 (714)
T KOG4629|consen  351 LHKIKKKNVSAWNMRRLMTILAAGGLTTLSPGFQLSTS--KDSSIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLR  428 (714)
T ss_pred             hhhhhHhhhcHhhhhHHHHHHhccCcccCCcccccccc--ccchhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhh
Confidence            99999999999999999999999999999887665431  1123358999999999999999999999999999999999


Q ss_pred             hccHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHhHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 004039          493 FMIKEEVDLVFPLIEGWDKGQIDRKALTDWVVKVYNDRKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATT  572 (777)
Q Consensus       493 f~~~eea~~af~lfd~d~~G~Is~~~l~~~vv~i~~eRk~L~~Sl~d~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t  572 (777)
                      |+.+|+|+.+|.+|++...+.|+++.+++|++++|+||++|+++++|+++++++|++++.+++.++++++++.++|++.+
T Consensus       429 f~~~E~a~~~~slfe~~~~~~Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~  508 (714)
T KOG4629|consen  429 FMGDEEAERAFSLFEGASDENITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTS  508 (714)
T ss_pred             cCCHHHHHHHHHhhhhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccce
Confidence            99999999999999986444499999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCcEEEEecccccCC
Q 004039          573 KVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATK  652 (777)
Q Consensus       573 ~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~  652 (777)
                      .+++.++++.++++|+|+++++++|.|+||+|+.|||||||||.|||+.+.|+||||++|+|.++||++++|||++|+++
T Consensus       509 ~~l~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k  588 (714)
T KOG4629|consen  509 KLLLVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTK  588 (714)
T ss_pred             eeeeeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeecCCCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEEEecCCceEEEEEEEEEccccccccc
Q 004039          653 PISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHWHPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGE  732 (777)
Q Consensus       653 ~I~N~sRS~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~  732 (777)
                      +|.|++||+.|.+.++|.++..|+++|++.|+++|.+|++++|.+|.|.+.+.+.++++.|++.+.+++.|+.||||..+
T Consensus       589 ~I~N~rRS~~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~  668 (714)
T KOG4629|consen  589 AISNYRRSPDMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKE  668 (714)
T ss_pred             hhhhhhcCccccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccCC
Q 004039          733 KNNRRSALITELKKFFEELEINYSLLPQQVHLHHIG  768 (777)
Q Consensus       733 r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~~  768 (777)
                      ++.||.+++.++.+.|+|+||+|.++|+++++.+.+
T Consensus       669 ~~~Rr~~~~~~l~~~~~eLdI~y~l~p~~in~~~~~  704 (714)
T KOG4629|consen  669 RWSRRTEFVSALTKIMRELDIEYTLYPLDINLKNLP  704 (714)
T ss_pred             HHhhHHHHHHHHHHHHHHcCcceeecCcchhhhcCC
Confidence            999999999999999999999999999999999876

>PRK10334 mechanosensitive channel MscS; Provisional Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation Back     alignment and domain information
>PRK11465 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only] Back     alignment and domain information
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand Back     alignment and domain information
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E Back     alignment and domain information
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction Back     alignment and domain information
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13 Back     alignment and domain information
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z Back     alignment and domain information
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11 Back     alignment and domain information
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif Back     alignment and domain information
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 Back     alignment and domain information
>smart00027 EH Eps15 homology domain Back     alignment and domain information
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms] Back     alignment and domain information
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6 Back     alignment and domain information
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1 Back     alignment and domain information
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands Back     alignment and domain information
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10 Back     alignment and domain information
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional Back     alignment and domain information
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A Back     alignment and domain information
>PTZ00184 calmodulin; Provisional Back     alignment and domain information
>PTZ00183 centrin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query777
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Length = 286 Back     alignment and structure
 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 45/259 (17%), Positives = 99/259 (38%), Gaps = 24/259 (9%)

Query: 522 WVVKVYND--RKALAHALTDTKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLS 579
            + ++ ++   + +     D  T    L  LV   ++  T+I  L  +G+ T  VI  L 
Sbjct: 43  IIARMISNAVNRLMISRKID-ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG 101

Query: 580 SQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSN 639
           +  +        +      A + + +  PF  G+   + GV   V  + I +T       
Sbjct: 102 AAGLVVGLALQGSLSN-LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG 160

Query: 640 EKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEK-IGMLKERIKLYLENNSLHW 698
           + I  PN  +    I N++R P   +     +A+ + I++   +L   I+     + +  
Sbjct: 161 KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQ---SEDRILK 217

Query: 699 HPNHSVVVKEIEN--VNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEE--LEIN 754
               +V + E+    +N   + ++ N + + Q           ++  +K+ F+   +   
Sbjct: 218 DREMTVRLNELGASSIN-FVVRVWSN-SGDLQNV------YWDVLERIKREFDAAGISFP 269

Query: 755 YSLLPQQ-VHLHHIGTESA 772
           Y   PQ  V+   +  + A
Sbjct: 270 Y---PQMDVNFKRVKEDKA 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query777
2vv5_A286 MSCS, small-conductance mechanosensitive channel; 100.0
3udc_A285 Small-conductance mechanosensitive channel, C-TER 100.0
2joj_A77 Centrin protein; N-terminal domain, centrin soluti 94.15
1tiz_A67 Calmodulin-related protein, putative; helix-turn-h 93.33
3li6_A66 Calcium-binding protein; calcium signaling protein 93.31
2pmy_A91 RAS and EF-hand domain-containing protein; rasef, 93.09
2ktg_A85 Calmodulin, putative; ehcam, Ca-binding protein, p 92.79
1k9u_A78 Polcalcin PHL P 7; pollen allergen, calcium-bindin 92.39
3akb_A166 Putative calcium binding protein; EF-hand, metal b 92.34
1fi6_A92 EH domain protein REPS1; EPS15 homology domain, EF 92.19
1eh2_A106 EPS15; calcium binding, signaling domain, NPF bind 92.15
2f33_A263 Calbindin; EF-hand, Ca2+-binding, metal binding pr 91.98
2kgr_A111 Intersectin-1; structure, alternative splicing, ca 91.9
1qjt_A99 EH1, epidermal growth factor receptor substrate su 91.89
1avs_A90 Troponin C; muscle contraction, calcium-activated, 91.67
2ccm_A191 Calexcitin; EF hand, calcium, signaling protein; 1 91.64
1uhk_A191 Aequorin 2, aequorin; EF-hand motif, complex, lumi 91.47
3n22_A98 Protein S100-A2; EF-hand, calcium-binding, zinc-bi 91.45
2kn2_A92 Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco 91.4
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 91.12
3ll8_B155 Calcineurin subunit B type 1; protein-peptide dock 90.87
1q80_A174 SCP, sarcoplasmic calcium-binding protein; all-alp 90.85
1qv0_A195 Obelin, OBL; photoprotein, bioluminescence, atomic 90.83
3dd4_A229 KV channel-interacting protein 4; EF-hands protein 90.62
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 90.61
1c07_A95 Protein (epidermal growth factor receptor pathway 90.54
2kz2_A94 Calmodulin, CAM; TR2C, metal binding protein; NMR 90.42
2sas_A185 Sarcoplasmic calcium-binding protein; 2.40A {Branc 90.26
1iq3_A110 Ralbp1-interacting protein (partner of ralbp1); EF 90.22
3khe_A191 Calmodulin-like domain protein kinase isoform 3; c 90.15
2opo_A86 Polcalcin CHE A 3; calcium-binding protein, dimer, 89.99
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 89.89
1s6c_A183 KV4 potassium channel-interacting protein kchip1B; 89.88
2jq6_A139 EH domain-containing protein 1; metal binding prot 89.82
3rm1_A92 Protein S100-B; alpha-helical, EF hand, metal bind 89.68
3nxa_A100 Protein S100-A16; S100 family, calcium binding pro 89.63
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 89.56
2b1u_A71 Calmodulin-like protein 5; CLSP, calmodulin-like S 89.53
2hpk_A208 Photoprotein berovin; structural genomics, PSI, pr 89.48
4eto_A93 Protein S100-A4; calcium-binding protein, EF-hand, 89.46
1rwy_A109 Parvalbumin alpha; EF-hand, calcium-binding, calci 89.45
2lv7_A100 Calcium-binding protein 7; metal binding protein; 89.39
1bu3_A109 Calcium-binding protein; 1.65A {Merluccius bilinea 89.34
2bl0_B145 Myosin regulatory light chain; muscle protein, sli 89.33
3zwh_A104 Protein S100-A4; Ca-binding protein-motor protein 89.3
2bl0_C142 Myosin regulatory light chain; muscle protein, sli 89.26
1g8i_A190 Frequenin, neuronal calcium sensor 1; calcium bind 89.26
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 89.05
3fwb_A161 Cell division control protein 31; gene gating, com 88.95
3fia_A121 Intersectin-1; EH 1 domain, NESG, structural genom 88.93
3nso_A101 Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, meta 88.93
5pal_A109 Parvalbumin; calcium-binding protein; 1.54A {Triak 88.93
1qls_A99 S100C protein, calgizzarin; metal-binding protein/ 88.92
3ox6_A153 Calcium-binding protein 1; EF-hand, calcium-sensor 88.92
3k21_A191 PFCDPK3, calcium-dependent protein kinase 3; calci 88.9
2wcb_A95 Protein S100-A12; calcium signalling, HOST-parasit 88.9
3qrx_A169 Centrin; calcium-binding, EF-hand, cell division, 88.86
2ehb_A207 Calcineurin B-like protein 4; protein complex, Ca( 88.82
3qrx_A169 Centrin; calcium-binding, EF-hand, cell division, 88.8
2lnk_A113 Protein S100-A4; EF-hand, calcium binding, all alp 88.77
2y5i_A99 S100Z, S100 calcium binding protein Z; metal-bindi 88.64
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 88.62
1bjf_A193 Neurocalcin delta; calcium-binding, myristoylation 88.62
3fwb_A161 Cell division control protein 31; gene gating, com 88.62
3a4u_B143 Multiple coagulation factor deficiency protein 2; 88.57
2l2e_A190 Calcium-binding protein NCS-1; NCS1P, myristoylate 88.52
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 88.35
1s1e_A224 KV channel interacting protein 1; kchip, calcium-b 88.34
5pal_A109 Parvalbumin; calcium-binding protein; 1.54A {Triak 88.32
1g8i_A190 Frequenin, neuronal calcium sensor 1; calcium bind 88.28
1j7q_A86 CAVP, calcium vector protein; EF-hand family, calc 88.28
4ds7_A147 Calmodulin, CAM; protein binding, metal binding, s 88.24
3akb_A166 Putative calcium binding protein; EF-hand, metal b 88.21
2zfd_A226 Calcineurin B-like protein 2; calcium binding prot 88.14
2jul_A256 Calsenilin; EF-hand, calcium, LXXLL, DNA binding p 88.13
2l2e_A190 Calcium-binding protein NCS-1; NCS1P, myristoylate 88.12
2pvb_A108 Protein (parvalbumin); calcium binding protein, me 88.12
1dtl_A161 Cardiac troponin C; helix-turn-helix, structural p 88.05
1xk4_C113 Calgranulin B; S100 family, heterotetramer, metal 87.84
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 87.77
2l4h_A214 Calcium and integrin-binding protein 1; metal bind 87.65
3h4s_E135 KCBP interacting Ca2+-binding protein; kinesin, mo 87.63
1k94_A165 Grancalcin; penta-EF-hand protein, calcium binding 87.6
1nya_A176 Calerythrin; EF-hand, metal binding protein; NMR { 87.53
1k2h_A93 S100A1, S-100 protein, alpha chain; non-covalent h 87.5
2mys_B166 Myosin; muscle protein, motor protein; HET: MLY; 2 87.48
1qx2_A76 Vitamin D-dependent calcium-binding protein, INTE; 87.46
3h4s_E135 KCBP interacting Ca2+-binding protein; kinesin, mo 87.36
1jba_A204 GCAP-2, protein (guanylate cyclase activating prot 87.31
3fs7_A109 Parvalbumin, thymic; calcium-binding protein, EF-h 87.31
2d8n_A207 Recoverin; structural genomics, NPPSFA, national p 87.29
1rwy_A109 Parvalbumin alpha; EF-hand, calcium-binding, calci 87.11
2ggz_A211 Guanylyl cyclase-activating protein 3; EF hand, gu 87.1
2sas_A185 Sarcoplasmic calcium-binding protein; 2.40A {Branc 87.07
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 87.05
2lmt_A148 Calmodulin-related protein 97A; spermatogenesis, m 87.01
3fs7_A109 Parvalbumin, thymic; calcium-binding protein, EF-h 87.0
2pvb_A108 Protein (parvalbumin); calcium binding protein, me 86.99
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 86.97
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 86.9
1fpw_A190 Yeast frequenin, calcium-binding protein NCS-1; EF 86.89
3khe_A191 Calmodulin-like domain protein kinase isoform 3; c 86.89
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 86.88
1j55_A95 S-100P protein; metal binding protein; 2.00A {Homo 86.85
3k21_A191 PFCDPK3, calcium-dependent protein kinase 3; calci 86.83
3ox6_A153 Calcium-binding protein 1; EF-hand, calcium-sensor 86.82
1s6c_A183 KV4 potassium channel-interacting protein kchip1B; 86.74
1gjy_A167 Sorcin, CP-22, V19; calcium binding, calcium-bindi 86.73
2jul_A256 Calsenilin; EF-hand, calcium, LXXLL, DNA binding p 86.72
1y1x_A191 Leishmania major homolog of programmed cell death 86.6
1juo_A198 Sorcin; calcium-binding proteins, penta-EF-hand, P 86.56
1m45_A148 MLC1P, myosin light chain; protein-peptide complex 86.52
3a8r_A179 Putative uncharacterized protein; EF-hand, membran 86.38
2i7a_A174 Calpain 13; calcium-dependent cytoplasmic cysteine 86.34
1bjf_A193 Neurocalcin delta; calcium-binding, myristoylation 86.33
3pm8_A197 PFCDPK2, calcium-dependent protein kinase 2; malar 86.3
1a4p_A96 S100A10; S100 family, EF-hand protein, ligand of a 86.3
1rro_A108 RAT oncomodulin; calcium-binding protein; 1.30A {R 86.23
1wlz_A105 DJBP, CAP-binding protein complex interacting prot 86.21
2d8n_A207 Recoverin; structural genomics, NPPSFA, national p 86.18
1c7v_A81 CAVP, calcium vector protein; EF-hand family, calc 86.18
1pva_A110 Parvalbumin; calcium binding; 1.65A {Esox lucius} 86.12
1k8u_A90 S100A6, calcyclin, CACY; calcium regulatory protei 86.08
1jfj_A134 Ehcabp, calcium-binding protein; EF-hand, helix-lo 86.04
1exr_A148 Calmodulin; high resolution, disorder, metal trans 86.04
1s1e_A224 KV channel interacting protein 1; kchip, calcium-b 85.92
3dd4_A229 KV channel-interacting protein 4; EF-hands protein 85.9
1bu3_A109 Calcium-binding protein; 1.65A {Merluccius bilinea 85.84
2znd_A172 Programmed cell death protein 6; penta-EF-hand pro 85.68
2lmt_A148 Calmodulin-related protein 97A; spermatogenesis, m 85.61
3sjs_A220 URE3-BP sequence specific DNA binding protein; EF- 85.38
1dgu_A183 Calcium-saturated CIB; helical, EF-hands, blood cl 85.38
2r2i_A198 Guanylyl cyclase-activating protein 1; EF hand, GC 85.35
1rro_A108 RAT oncomodulin; calcium-binding protein; 1.30A {R 85.31
1wdc_C156 Scallop myosin; calcium binding protein, muscle pr 85.23
1exr_A148 Calmodulin; high resolution, disorder, metal trans 85.19
1xk4_A93 Calgranulin A; S100 family, heterotetramer, metal 85.11
1pva_A110 Parvalbumin; calcium binding; 1.65A {Esox lucius} 85.11
2ct9_A208 Calcium-binding protein P22; EF-hand, metal bindin 85.11
1y1x_A191 Leishmania major homolog of programmed cell death 85.1
3sjs_A220 URE3-BP sequence specific DNA binding protein; EF- 85.06
2d58_A107 Allograft inflammatory factor 1; EF-hand, metal bi 85.0
1alv_A173 Calpain, S-camld; calcium binding, calmodulin like 84.81
3ll8_B155 Calcineurin subunit B type 1; protein-peptide dock 84.6
1snl_A103 Nucleobindin 1, calnuc; EF-hand, calcium-binding, 84.59
1qv0_A195 Obelin, OBL; photoprotein, bioluminescence, atomic 84.57
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 84.5
4ds7_A147 Calmodulin, CAM; protein binding, metal binding, s 84.42
2f2o_A179 Calmodulin fused with calmodulin-binding domain of 84.39
1m45_A148 MLC1P, myosin light chain; protein-peptide complex 84.38
3nyv_A484 Calmodulin-domain protein kinase 1; serine/threoni 84.34
2ccm_A191 Calexcitin; EF hand, calcium, signaling protein; 1 84.3
2kax_A92 Protein S100-A5; EF-hand, calcium binding protien, 84.24
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 84.18
1eg3_A261 Dystrophin; EF-hand like domain, WW domain, struct 84.09
2jnf_A158 Troponin C; stretch activated muscle contraction, 84.08
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 84.04
3j04_B143 Myosin regulatory light chain 2, smooth muscle MA 84.03
2hps_A186 Coelenterazine-binding protein with bound coelent; 84.0
3e3r_A204 Calcyphosin, calcyphosine; human calcyphosine, EF- 83.98
2ggz_A211 Guanylyl cyclase-activating protein 3; EF hand, gu 83.91
1jba_A204 GCAP-2, protein (guanylate cyclase activating prot 83.85
2znd_A172 Programmed cell death protein 6; penta-EF-hand pro 83.68
2aao_A166 CDPK, calcium-dependent protein kinase, isoform AK 83.56
1uhk_A191 Aequorin 2, aequorin; EF-hand motif, complex, lumi 83.48
2lhi_A176 Calmodulin, serine/threonine-protein phosphatase c 83.45
3pm8_A197 PFCDPK2, calcium-dependent protein kinase 2; malar 83.35
3dtp_E196 RLC, myosin regulatory light chain; muscle protein 83.32
1yx7_A83 Calsensin, LAN3-6 antigen; calcium-binding protein 83.21
2h2k_A106 Protein S100-A13; calcium binding protein, metal b 82.96
1wdc_B156 Scallop myosin; calcium binding protein, muscle pr 82.9
2bl0_C142 Myosin regulatory light chain; muscle protein, sli 82.89
2lhi_A176 Calmodulin, serine/threonine-protein phosphatase c 82.87
3q5i_A504 Protein kinase; CDPK, malaria, phosphotransferase, 82.68
1cb1_A78 Calbindin D9K; calcium-binding protein; NMR {Sus s 82.43
2f2o_A179 Calmodulin fused with calmodulin-binding domain of 82.3
1w7j_B151 Myosin light chain 1; motor protein, unconventiona 82.07
2be4_A272 Hypothetical protein LOC449832; DR.36843, BC083168 81.98
2aao_A166 CDPK, calcium-dependent protein kinase, isoform AK 81.67
2ehb_A207 Calcineurin B-like protein 4; protein complex, Ca( 81.67
2bec_A202 Calcineurin B homologous protein 2; calcineurin-ho 81.61
1dtl_A161 Cardiac troponin C; helix-turn-helix, structural p 81.51
2ovk_B153 RLC, myosin regulatory light chain LC-2, mantle mu 81.43
3mse_B180 Calcium-dependent protein kinase, putative; CDPKS, 81.33
2hpk_A208 Photoprotein berovin; structural genomics, PSI, pr 81.32
3lij_A494 Calcium/calmodulin dependent protein kinase with A 80.82
3q5i_A504 Protein kinase; CDPK, malaria, phosphotransferase, 80.62
2qac_A146 Myosin A tail domain interacting protein MTIP; mal 80.49
3nyv_A484 Calmodulin-domain protein kinase 1; serine/threoni 80.33
1s6j_A87 CDPK, calcium-dependent protein kinase SK5; EF-han 80.02
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A Back     alignment and structure
Probab=100.00  E-value=6.7e-38  Score=334.01  Aligned_cols=221  Identities=18%  Similarity=0.301  Sum_probs=204.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhcCCccCCcEEEECC
Q 004039          540 TKTAVKQLDKLVTAIVVVVTIIVWLLLMGIATTKVIVFLSSQFVAAAFVFGTTCRTIFEAIIFVFVMHPFDVGDRCVVDG  619 (777)
Q Consensus       540 ~~t~v~~L~~il~~iv~ii~iii~L~ilGi~~t~lla~lgs~~LalgFafq~tl~nif~SgIFIfv~hPFdVGDrV~Idg  619 (777)
                      ..+....+.+++.+++++++++++|..+|++++++++++|++++|+||++|++++|++ ||++|++.|||+|||+|+++|
T Consensus        62 ~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q~~l~n~~-sGi~i~~~~pf~vGD~I~i~g  140 (286)
T 2vv5_A           62 DATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGG  140 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHTTCSSCTTCEEESSS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHhcCCccCCCEEEECC
Confidence            4678889999999999999999999999999999999999999999999999999965 678999999999999999999


Q ss_pred             eeEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeecCCCCceEEEEEEEeecCCHHHHHHHHHHHHHHHHhCCCCC-
Q 004039          620 VPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYNRSPDMSDTVEFSIAFATPIEKIGMLKERIKLYLENNSLHW-  698 (777)
Q Consensus       620 ~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~sRS~~~~~~i~~~V~~~Td~ekIe~Lk~~I~~~l~s~p~~~-  698 (777)
                      ..|+|++|++++|+++++||+.++|||+.+.++.|.|+||++.++..+++.|+|++|+++   +++.++++++++|... 
T Consensus       141 ~~G~V~~I~l~~T~i~t~dg~~v~IPNs~l~~~~i~N~s~~~~~r~~~~v~v~y~~d~~~---v~~~l~~~~~~~~~vl~  217 (286)
T 2vv5_A          141 VAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQ---VKQILTNIIQSEDRILK  217 (286)
T ss_dssp             CEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESSSSSEEEEEEEEEECTTSCHHH---HHHHHHHHHHHCTTBCT
T ss_pred             EEEEEEEEEeEEEEEEeCCCCEEEechHHHhhCceEECCCCCcEEEEEEEEEcCCCCHHH---HHHHHHHHHHhCccccc
Confidence            999999999999999999999999999999999999999998888999999999999998   6778999999999876 


Q ss_pred             CCCcEEEEEEecCCceEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHcCCcccCCCeeEEeccCCCC
Q 004039          699 HPNHSVVVKEIENVNKIKIALYCNHTMNFQEFGEKNNRRSALITELKKFFEELEINYSLLPQQVHLHHIGTE  770 (777)
Q Consensus       699 ~p~~~V~v~~i~d~~~l~l~v~v~~~~N~qn~~~r~~rRs~l~~~I~k~l~e~GI~~~~P~~~V~l~~~~~~  770 (777)
                      +|.|.+.+.++++ ++++++++++.+.     ..++..|++++++++++|+++||++|+|++++|+.+.+.+
T Consensus       218 ~p~p~v~v~~~~~-~~i~~~v~~~~~~-----~~~~~~~~~l~~~i~~~~~~~gI~ip~P~~~v~~~~~~~~  283 (286)
T 2vv5_A          218 DREMTVRLNELGA-SSINFVVRVWSNS-----GDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKED  283 (286)
T ss_dssp             TSCEEEEEEEECS-SSEEEEEEEEEET-----TTHHHHHHHHHHHHHHHHHHHTCCCCCCEEEEEEECC---
T ss_pred             CCCCEEEEEEecC-CeEEEEEEEEEcc-----chHHHHHHHHHHHHHHHHHHCCCcCCCCceEEEeccCCcc
Confidence            6788999999999 8999999888753     4678999999999999999999999999999999875543
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A* Back     alignment and structure
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus} Back     alignment and structure
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5 Back     alignment and structure
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica} Back     alignment and structure
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10 Back     alignment and structure
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Back     alignment and structure
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6 Back     alignment and structure
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A Back     alignment and structure
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A Back     alignment and structure
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens} Back     alignment and structure
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6 Back     alignment and structure
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A Back     alignment and structure
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Back     alignment and structure
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Back     alignment and structure
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max} Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Back     alignment and structure
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A Back     alignment and structure
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Back     alignment and structure
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 Back     alignment and structure
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus} Back     alignment and structure
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Back     alignment and structure
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6 Back     alignment and structure
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Back     alignment and structure
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Back     alignment and structure
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A Back     alignment and structure
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ... Back     alignment and structure
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO, EF-hand calcium binding proteins, S100 proteins, protein dynamics, binding protein; 2.10A {Homo sapiens} SCOP: a.39.1.0 PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Back     alignment and structure
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Back     alignment and structure
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A* Back     alignment and structure
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Back     alignment and structure
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Back     alignment and structure
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} Back     alignment and structure
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A Back     alignment and structure
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding protein; 1.45A {Homo sapiens} SCOP: a.39.1.2 PDB: 3nsi_A 1kso_A 3nsk_A 3nsl_A Back     alignment and structure
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Back     alignment and structure
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100 family, EF-hand protein, complex (ligand/annexin), ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2 PDB: 1nsh_A Back     alignment and structure
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Back     alignment and structure
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Back     alignment and structure
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A Back     alignment and structure
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Back     alignment and structure
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Back     alignment and structure
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A Back     alignment and structure
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A Back     alignment and structure
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein, EF-hand, calcium regulation, oligomer neuronal development, spine2; 2.03A {Danio rerio} Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C Back     alignment and structure
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Back     alignment and structure
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4 Back     alignment and structure
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A Back     alignment and structure
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A Back     alignment and structure
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A Back     alignment and structure
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A Back     alignment and structure
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A Back     alignment and structure
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Back     alignment and structure
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Back     alignment and structure
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Back     alignment and structure
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1irj_A* Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A Back     alignment and structure
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A Back     alignment and structure
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5 Back     alignment and structure
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A Back     alignment and structure
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B Back     alignment and structure
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A Back     alignment and structure
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana} Back     alignment and structure
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A Back     alignment and structure
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Back     alignment and structure
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A Back     alignment and structure
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Back     alignment and structure
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma lanceolatum} SCOP: a.39.1.5 Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A Back     alignment and structure
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A Back     alignment and structure
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A Back     alignment and structure
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii} Back     alignment and structure
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP: a.39.1.2 PDB: 1ozo_A Back     alignment and structure
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase structural genomics malaria, structural genom consortium, SGC, ATP-binding; 1.15A {Plasmodium falciparum} PDB: 3o4y_A Back     alignment and structure
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A Back     alignment and structure
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E Back     alignment and structure
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8 Back     alignment and structure
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus} Back     alignment and structure
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Back     alignment and structure
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A Back     alignment and structure
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Back     alignment and structure
>3a8r_A Putative uncharacterized protein; EF-hand, membrane, oxidoreductase, transmembrane, calcium BI protein; 2.40A {Oryza sativa japonica group} Back     alignment and structure
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens} Back     alignment and structure
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Back     alignment and structure
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A Back     alignment and structure
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Back     alignment and structure
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7 Back     alignment and structure
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Back     alignment and structure
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A Back     alignment and structure
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Back     alignment and structure
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A Back     alignment and structure
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal binding protein; NMR {Entamoeba histolytica} SCOP: a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A Back     alignment and structure
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Back     alignment and structure
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5 Back     alignment and structure
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A Back     alignment and structure
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4 Back     alignment and structure
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Back     alignment and structure
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A Back     alignment and structure
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Back     alignment and structure
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A* Back     alignment and structure
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus} Back     alignment and structure
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A Back     alignment and structure
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Back     alignment and structure
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ... Back     alignment and structure
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB: 1mr8_A Back     alignment and structure
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A Back     alignment and structure
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A Back     alignment and structure
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8 Back     alignment and structure
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural genomics, seattle S genomics center for infectious disease, ssgcid; 1.90A {Entamoeba histolytica} PDB: 3sia_A 3sib_A Back     alignment and structure
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens} Back     alignment and structure
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S 3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A Back     alignment and structure
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B* Back     alignment and structure
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding protein; NMR {Homo sapiens} SCOP: a.39.1.7 Back     alignment and structure
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A* Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Back     alignment and structure
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A Back     alignment and structure
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Back     alignment and structure
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A Back     alignment and structure
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Back     alignment and structure
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii} Back     alignment and structure
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium, polymorphism, structural genomics, spine2, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 2kay_A Back     alignment and structure
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A Back     alignment and structure
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Back     alignment and structure
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A Back     alignment and structure
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand, phosphoprotein, calcium binding; 2.65A {Homo sapiens} Back     alignment and structure
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens} Back     alignment and structure
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5 Back     alignment and structure
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A Back     alignment and structure
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A Back     alignment and structure
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1} Back     alignment and structure
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia} Back     alignment and structure
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A Back     alignment and structure
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A Back     alignment and structure
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ... Back     alignment and structure
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Back     alignment and structure
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1 Back     alignment and structure
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A Back     alignment and structure
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens} SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B* 1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C Back     alignment and structure
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium binding, EF-hand superfamily, S genomics, protein structure initiative, PSI; 2.10A {Danio rerio} PDB: 2q4u_A Back     alignment and structure
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A Back     alignment and structure
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} Back     alignment and structure
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ... Back     alignment and structure
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum} Back     alignment and structure
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola} Back     alignment and structure
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Back     alignment and structure
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Back     alignment and structure
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Back     alignment and structure
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Back     alignment and structure
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 777
d2vv5a167 b.38.1.3 (A:113-179) Mechanosensitive channel prot 3e-11
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure

class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 14/61 (22%), Positives = 24/61 (39%)

Query: 597 FEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISN 656
             A + + +  PF  G+   + GV   V  + I +T       + I  PN  +    I N
Sbjct: 6   LAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIIN 65

Query: 657 Y 657
           +
Sbjct: 66  F 66

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query777
d2vv5a167 Mechanosensitive channel protein MscS (YggB), midd 99.71
d2vv5a2101 Mechanosensitive channel protein MscS (YggB), C-te 99.36
d2vv5a386 Mechanosensitive channel protein MscS (YggB), tran 97.88
d1tiza_67 Calmodulin-related protein T21P5.17 {Thale cress ( 95.78
d2hf5a133 Troponin C {Human (Homo sapiens), cardiac isoform 95.0
d1c7va_68 Calcium vector protein {Amphioxus (Branchiostoma l 93.96
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 93.77
d2opoa181 Polcalcin Che a 3 {Pigweed (Chenopodium album) [Ta 93.48
d1oqpa_77 Caltractin (centrin 2) {Green algae (Chlamydomonas 92.94
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 92.79
d1xo5a_180 Calcium- and integrin-binding protein, CIB {Human 92.73
d2pq3a173 Calmodulin {Rattus norvegicus [TaxId: 10116]} 92.41
d1c07a_95 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 91.8
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 91.7
d1avsa_81 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 91.66
d2scpa_174 Sarcoplasmic calcium-binding protein {Sandworm (Ne 91.62
d1fi5a_81 Troponin C {Chicken (Gallus gallus), cardiac isofo 91.61
d2sasa_185 Sarcoplasmic calcium-binding protein {Amphioxus (B 91.47
d1jc2a_75 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 91.38
d1rroa_108 Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116 90.96
d1fw4a_65 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 90.91
d1pvaa_109 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 90.84
d1qv0a_189 Calcium-regulated photoprotein {Hydrozoa (Obelia l 90.71
d1fi6a_92 Reps1 {Mouse (Mus musculus) [TaxId: 10090]} 90.69
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 90.6
d2zfda1183 Calcineurin B-like protein 2 {Thale cress (Arabido 90.49
d1nyaa_176 Calerythrin {Saccharopolyspora erythraea [TaxId: 1 90.39
d5pala_109 Parvalbumin {Leopard shark (Triakis semifasciata) 90.29
d1qjta_99 Eps15 {Mouse (Mus musculus) [TaxId: 10090]} 90.25
d1rwya_109 Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} 89.99
d1f54a_77 Calmodulin {Baker's yeast (Saccharomyces cerevisia 89.73
d2fcea161 Calmodulin {Cow (Bos taurus) [TaxId: 9913]} 89.47
d3c1va193 Calcyclin (S100) {Human (Homo sapiens), s100a4 [Ta 89.37
d1uhka1187 Calcium-regulated photoprotein {Jellyfish (Aequore 89.22
d1snla_99 Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [Tax 89.03
d1dtla_156 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 88.73
d1exra_146 Calmodulin {Ciliate (Paramecium tetraurelia) [TaxI 88.53
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 88.45
d1g8ia_187 Frequenin (neuronal calcium sensor 1) {Human (Homo 88.43
d2jxca195 Eps15 {Human (Homo sapiens) [TaxId: 9606]} 88.37
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 88.02
d1iq3a_110 Pob1 {Human (Homo sapiens) [TaxId: 9606]} 87.47
d1wrka182 Troponin C {Human (Homo sapiens), cardiac isoform 87.33
d1bjfa_181 Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} 87.28
d1jbaa_189 Guanylate cyclase activating protein 2, GCAP-2 {Co 87.16
d1lkja_146 Calmodulin {Baker's yeast (Saccharomyces cerevisia 87.15
d2obha1141 Calmodulin {Human (Homo sapiens) [TaxId: 9606]} 86.81
d1omra_201 Recoverin {Cow (Bos taurus) [TaxId: 9913]} 86.79
d1jfja_134 EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 86.46
d1m45a_146 Myosin Light Chain Mlc1p {Baker's yeast (Saccharom 86.44
d2pvba_107 Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} 86.3
d1a4pa_92 Calcyclin (S100) {Human (Homo sapiens), P11 s100a1 86.22
d5pala_109 Parvalbumin {Leopard shark (Triakis semifasciata) 86.2
d1ksoa_93 Calcyclin (S100) {Human (Homo sapiens), s100a3 [Ta 85.91
d1topa_162 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 85.7
d1k94a_165 Grancalcin {Human (Homo sapiens) [TaxId: 9606]} 85.35
d1qx2a_76 Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} 84.9
d1ctda_34 Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} 84.43
d1psra_100 Calcyclin (S100) {Human (Homo sapiens), psoriasin 84.25
d1wlza183 DJ-1-binding protein, DJBP {Human (Homo sapiens) [ 83.96
d1zfsa193 Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 83.68
d1e8aa_87 Calcyclin (S100) {Human (Homo sapiens), calgranuli 83.27
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 83.14
d1fpwa_190 Frequenin (neuronal calcium sensor 1) {Baker's yea 82.44
d1auib_165 Calcineurin regulatory subunit (B-chain) {Human (H 82.34
d1cb1a_78 Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]} 81.35
d1yuta198 Calcyclin (S100) {Human (Homo sapiens), s100a13 [T 81.17
d1hqva_181 Apoptosis-linked protein alg-2 {Mouse (Mus musculu 80.85
d1s6ja_87 Calcium-dependent protein kinase sk5 CLD {Soybean 80.47
d1s6ca_178 Kchip1, Kv4 potassium channel-interacting protein 80.35
d2mysb_145 Myosin Essential Chain {Chicken (Gallus gallus) [T 80.08
>d2vv5a1 b.38.1.3 (A:113-179) Mechanosensitive channel protein MscS (YggB), middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Sm-like fold
superfamily: Sm-like ribonucleoproteins
family: Mechanosensitive channel protein MscS (YggB), middle domain
domain: Mechanosensitive channel protein MscS (YggB), middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5.5e-18  Score=140.63  Aligned_cols=67  Identities=21%  Similarity=0.348  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHHhhhhcCCccCCcEEEECCeeEEEEEEeeeEEEEEecCCcEEEEecccccCCcEEeec
Q 004039          591 TTCRTIFEAIIFVFVMHPFDVGDRCVVDGVPLLVEEMNILTTIFLKLSNEKISYPNSVLATKPISNYN  658 (777)
Q Consensus       591 ~tl~nif~SgIFIfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvfrt~Dg~~V~IPNS~L~t~~I~N~s  658 (777)
                      .+++|++ |++++++++||++||||+|+|..|+|++|+|++|++++.||+.++|||+.+.++.|.|||
T Consensus         1 GtlsN~~-sGi~i~~~~pf~vGD~I~i~~~~G~V~~I~l~~T~l~~~dg~~i~iPN~~~~~~~i~N~S   67 (67)
T d2vv5a1           1 GSLSNLA-AGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFS   67 (67)
T ss_dssp             HHHHHHH-HHHHHHTTCSSCTTCEEESSSCEEEEEEECSSEEEEECTTSCEEEEEHHHHHTSCEEESS
T ss_pred             CcHHHHH-HHhhheeeCCccCCCEEEECCEEEEEEEEeceEEEEEccCCCEEEEECHHHcCCccEECc
Confidence            3789955 678899999999999999999999999999999999999999999999999999999986
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tiza_ a.39.1.5 (A:) Calmodulin-related protein T21P5.17 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d1c7va_ a.39.1.5 (A:) Calcium vector protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium album) [TaxId: 3559]} Back     information, alignment and structure
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2pq3a1 a.39.1.5 (A:3-75) Calmodulin {Rattus norvegicus [TaxId: 10116]} Back     information, alignment and structure
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1avsa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2scpa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Sandworm (Nereis diversicolor) [TaxId: 126592]} Back     information, alignment and structure
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]} Back     information, alignment and structure
>d2sasa_ a.39.1.5 (A:) Sarcoplasmic calcium-binding protein {Amphioxus (Branchiostoma lanceolatum) [TaxId: 7740]} Back     information, alignment and structure
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pvaa_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]} Back     information, alignment and structure
>d1fi6a_ a.39.1.6 (A:) Reps1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nyaa_ a.39.1.5 (A:) Calerythrin {Saccharopolyspora erythraea [TaxId: 1836]} Back     information, alignment and structure
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Back     information, alignment and structure
>d1qjta_ a.39.1.6 (A:) Eps15 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rwya_ a.39.1.4 (A:) Parvalbumin {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Back     information, alignment and structure
>d1uhka1 a.39.1.5 (A:3-189) Calcium-regulated photoprotein {Jellyfish (Aequorea aequorea), aequorin [TaxId: 168712]} Back     information, alignment and structure
>d1snla_ a.39.1.7 (A:) Nucleobindin 1 (CALNUC) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtla_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1exra_ a.39.1.5 (A:) Calmodulin {Ciliate (Paramecium tetraurelia) [TaxId: 5888]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g8ia_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1iq3a_ a.39.1.6 (A:) Pob1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]} Back     information, alignment and structure
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jbaa_ a.39.1.5 (A:) Guanylate cyclase activating protein 2, GCAP-2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica) [TaxId: 5759]} Back     information, alignment and structure
>d1m45a_ a.39.1.5 (A:) Myosin Light Chain Mlc1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pvba_ a.39.1.4 (A:) Parvalbumin {Pike (Esox lucius) [TaxId: 8010]} Back     information, alignment and structure
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]} Back     information, alignment and structure
>d5pala_ a.39.1.4 (A:) Parvalbumin {Leopard shark (Triakis semifasciata) [TaxId: 30493]} Back     information, alignment and structure
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Back     information, alignment and structure
>d1topa_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1psra_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), psoriasin s100a7 [TaxId: 9606]} Back     information, alignment and structure
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zfsa1 a.39.1.2 (A:1-93) Calcyclin (S100) {Rat (Rattus norvegicus), s100a1 [TaxId: 10116]} Back     information, alignment and structure
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cb1a_ a.39.1.1 (A:) Calbindin D9K {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1yuta1 a.39.1.2 (A:1-98) Calcyclin (S100) {Human (Homo sapiens), s100a13 [TaxId: 9606]} Back     information, alignment and structure
>d1hqva_ a.39.1.8 (A:) Apoptosis-linked protein alg-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1s6ja_ a.39.1.5 (A:) Calcium-dependent protein kinase sk5 CLD {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure