Citrus Sinensis ID: 004056
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | 2.2.26 [Sep-21-2011] | |||||||
| Q93XX4 | 751 | C2 domain-containing prot | yes | no | 0.929 | 0.960 | 0.605 | 0.0 | |
| Q5DTI8 | 891 | Extended synaptotagmin-3 | yes | no | 0.463 | 0.404 | 0.260 | 5e-20 | |
| A0FGR9 | 886 | Extended synaptotagmin-3 | yes | no | 0.456 | 0.399 | 0.243 | 3e-18 | |
| Q8L706 | 560 | Synaptotagmin-5 OS=Arabid | no | no | 0.476 | 0.660 | 0.229 | 5e-18 | |
| Q5M7N9 | 889 | Extended synaptotagmin-3 | yes | no | 0.390 | 0.340 | 0.233 | 2e-17 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.389 | 0.530 | 0.246 | 4e-15 | |
| A0FGR8 | 921 | Extended synaptotagmin-2 | no | no | 0.381 | 0.321 | 0.234 | 9e-15 | |
| Q3TZZ7 | 845 | Extended synaptotagmin-2 | no | no | 0.381 | 0.350 | 0.237 | 1e-14 | |
| Q03640 | 1545 | Tricalbin-3 OS=Saccharomy | yes | no | 0.391 | 0.196 | 0.233 | 7e-14 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.132 | 0.100 | 0.403 | 3e-13 |
| >sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/771 (60%), Positives = 567/771 (73%), Gaps = 50/771 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSSDDPL----------- 409
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG+
Sbjct: 410 -KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPGA 465
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---SI 539
EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S+
Sbjct: 466 EVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKSV 515
Query: 540 RRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGSI 596
RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG +
Sbjct: 516 GRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGPL 575
Query: 597 PVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 656
K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 576 SGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGHK 631
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITRT 709
+ S D+ + ++ + P + TRD N + T
Sbjct: 632 EIVPESDSGTDSESSDDDDAFTCVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLAT 687
Query: 710 SSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 760
+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 688 AKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 182/419 (43%), Gaps = 59/419 (14%)
Query: 8 IMHHVGIVLFLL---WLLSYFDRCHPAAYFISLIYLYSVHDRY--VMRLRRKVEFEERKN 62
+ V VLF L +L Y +L++++ +R + RL EF E +
Sbjct: 39 LYSFVARVLFYLAPVYLAGYLGLSVTWLLLGALLWMWWRRNRRGKLGRLEAAFEFLEHER 98
Query: 63 SFQRRVLK-----------DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYK 111
F R L+ D E V W N I ++WP + I K+ EK +
Sbjct: 99 EFISRELRGQHLPAWIHFPDVERVEWANKIIIQIWPY-LSMIMENKIR--------EKLE 149
Query: 112 PWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAIL 165
P +K++ LY G+ P + ++V + + L+L + ++ ++S
Sbjct: 150 PKIREKSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYIGDCEIS--- 206
Query: 166 AVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKP 224
V+L+K G V+G+ ++G + V ++ L PFI + V F + P+ Q+
Sbjct: 207 -VELQKIRG-------GVSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQKPHLQIN--- 255
Query: 225 IFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPV 284
+T ++ + PGI D LL LV PN + V V K + ++ V P
Sbjct: 256 -WTGLTNLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGL-----DVTNLRVPLPC 309
Query: 285 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
RV ++EA + D L G +DPY K +G R++T K L+P W+E F +
Sbjct: 310 GVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMV 369
Query: 341 STWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
++ P L +++ D+D DD LG I + D+ + D W L + GRLHL +
Sbjct: 370 --YEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTTSGRLHLRL 426
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 65/419 (15%)
Query: 14 IVLFLLWLLSYFDRCHPAAYFI---------SLIYLYSVHDRY--VMRLRRKVEFEERKN 62
+ F++ +L Y + A Y +L++++ +R + RL EF + +
Sbjct: 35 LCTFVVRVLFYLGPVYLAGYLGLSITWLLLGALLWMWWRRNRRGKLGRLAAAFEFLDNER 94
Query: 63 SFQRRVLK-----------DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYK 111
F R L+ D E V W N I + WP + I K F EK +
Sbjct: 95 EFISRELRGQHLPAWIHFPDVERVEWANKIISQTWPY-LSMIMESK--------FREKLE 145
Query: 112 PWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAIL 165
P +K++ LY G+ P + ++ + + + ++L + ++ ++S
Sbjct: 146 PKIREKSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGDCEIS--- 202
Query: 166 AVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKP 224
V+L+K + V G+ ++G + V ++ L PF+ + V F + P+ Q+
Sbjct: 203 -VELQK-------IQAGVNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPHLQIN--- 251
Query: 225 IFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPV 284
+T ++ + PGI D LL LV PN + V V K + ++ P
Sbjct: 252 -WTGLTNLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTNLRFPLPC 305
Query: 285 AYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
RV ++EA + D L G +DPY K +G FR++T + L+P W+E F +
Sbjct: 306 GVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEFMV 365
Query: 341 STWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
++ P L +++ D+D DD LG I + D+ + D W L + GRLHL +
Sbjct: 366 --YEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSGRLHLRL 422
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/405 (22%), Positives = 184/405 (45%), Gaps = 35/405 (8%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + + WLNH + K+WP E A+ +L+ + LE+Y+P L LG
Sbjct: 64 VFSERQKLTWLNHHLTKIWPYVDE--AASELIKASVEPVLEQYRPAIVASLTFSKLTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + V+ D + + LEL M + D + + + ++ +G + + V +
Sbjct: 122 VAPQFTGVSVI--DGDKNGITLELDMQW----DGNPNIVLGVKTLVGVSL--PIQVKNIG 173
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
G L+ + +P + V E T+K + G D++ PG++ +++ +
Sbjct: 174 FTGVFRLIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVV---GGDISAIPGLSEAIEETI 230
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P V K PG++ +++K PV V++V+A ++ DL G +
Sbjct: 231 RDAVEDSITWP------VRKVIPIIPGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKS 283
Query: 307 DPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
DP+ K + P R R+KT L+P W+E F + + +++V D+ +
Sbjct: 284 DPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQHLVVRIYDDEGVQASEL 343
Query: 364 LGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLAITVLEE-SAKGVDSPCDG 414
+G I + +L G+ D+W+ L ++++I G +HL + + S G+ +P
Sbjct: 344 IGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFVT 403
Query: 415 GTLNKEGMGNKEDQSNKEDIRESFANETTDKG--SFSSVSSEKSP 457
++ K D +++E+ + +G S + +S+E+ P
Sbjct: 404 SSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAEEIP 448
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 158/343 (46%), Gaps = 40/343 (11%)
Query: 71 DSETVRWLNHAIEKMWP---ICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
D E V WLN + +MWP + +E++ K+ P++ K +T K ++LG
Sbjct: 155 DVERVEWLNKVVGQMWPYIGMYVEKMFQDKVE-PLVRSSSAHLKAFTFTK-----VHLGE 208
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P + ++ ++ D ++L+L +++ D+ + VK + G V G+
Sbjct: 209 KFPRINGVKSYTKNVDKREVILDLQLSY--NGDVEINVEVKKMCKAG--------VKGVQ 258
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
+ G + ++ L PF+ + + F + P+ + +T +V E PG++ + D ++
Sbjct: 259 LHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDIN----WTGLTNVLEIPGVSDFSDSMI 314
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYA--RVEVVEASDMKPSD--- 301
LV PN +F P + ++ P+ + R+ ++EA D+ P D
Sbjct: 315 VDMIASHLVLPN-------RFTVPLSSQVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYL 367
Query: 302 ---LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358
+ G +DPY ++G F+++T ++ L+PKW E + + + L +++ D+D
Sbjct: 368 KGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFVVHEVPGQD-LEVDLYDEDP 426
Query: 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401
DD LG I + + + D W PL ++ G +HL + L
Sbjct: 427 DKDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLEWL 469
|
May play a role as calcium-regulated intrinsic membrane protein. Xenopus tropicalis (taxid: 8364) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 149/337 (44%), Gaps = 35/337 (10%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + WLN +EK+WP E A+ +L+ + LE+Y P LG
Sbjct: 64 VFSQRQKLNWLNLELEKIWPYVNE--AASELIKSSVEPVLEQYTPAMLASLKFSKFTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + +L + + + +EL M + D + + + ++ LG + ++ G
Sbjct: 122 VAPQFTGVSILESESGPNGITMELEMQW----DGNPKIVLDVKTLLGVSLPIEVKNIG-- 175
Query: 188 VEGKVLVGVKFLRRWPFIDRLRVCFAEPPY-------FQMTVKPIFTHGLDVTEFPGIAG 240
GV L P +D CF Y T+K I G ++T PGI+
Sbjct: 176 -----FTGVFRLIFKPLVDEFP-CFGALSYSLREKKGLDFTLKVI---GGELTSIPGISD 226
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
+++ + A E ++ P V K PG++ +++K PV V+VV+A D+
Sbjct: 227 AIEETIRDAIEDSITWP------VRKIIPILPGDYSDLELK-PVGKLDVKVVQAKDLANK 279
Query: 301 DLNGLADPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357
D+ G +DPY + P RTK T +L+P W+E F + + ++ V D+
Sbjct: 280 DMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEG 339
Query: 358 HFVDDTLGDCTINISDLRDGQRHDMWIPL-QNIKIGR 393
+G + +++L G+ D+W+ L ++++I R
Sbjct: 340 VGSSQLIGAAQVPLNELVPGKVKDIWLKLVKDLEIQR 376
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 154/345 (44%), Gaps = 49/345 (14%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLY------ 124
D+E WLN ++ MWP + I +KL F E +P A + HL
Sbjct: 191 DTERAEWLNKTVKHMWPFICQFI--EKL-------FRETIEP--AVRGANTHLSTFSFTK 239
Query: 125 --LGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMH 182
+G+ P + ++V ++ D ++L+L ++F+ ++ L +K + +
Sbjct: 240 VDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEID--LEIKR-------YFCRAG 290
Query: 183 VTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGW 241
V + + G + V ++ + P + L + F P ++ +T ++ + PG+ G
Sbjct: 291 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEIN----WTGLTNLLDVPGLNGL 346
Query: 242 LDKLLSIAFEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
D ++ LV PN + V V + Q + P R+ +EA D++
Sbjct: 347 SDTIILDIISNYLVLPNRITVPLVSEVQIAQ------LRFPVPKGVLRIHFIEAQDLQGK 400
Query: 301 D------LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEV 353
D + G +DPY ++G F+++ ++ LSPKW+E + + ++ P L IE+
Sbjct: 401 DTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALV--YEHPGQELEIEL 458
Query: 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D+D DD LG I++ ++ + D W L + G+LHL +
Sbjct: 459 FDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRL 503
|
May play a role as calcium-regulated intrinsic membrane protein. Homo sapiens (taxid: 9606) |
| >sp|Q3TZZ7|ESYT2_MOUSE Extended synaptotagmin-2 OS=Mus musculus GN=Esyt2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 154/345 (44%), Gaps = 49/345 (14%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLY------ 124
D+E WLN ++ MWP + I +KL F E +P A + HL
Sbjct: 115 DTERAEWLNKTVKHMWPFICQFI--EKL-------FRETIEP--AVRGANAHLSTFSFTK 163
Query: 125 --LGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMH 182
+G+ P + ++V ++ D ++L+L ++F+ ++ L +K + +
Sbjct: 164 VDVGQQPLRVNGVKVYTENVDKRQIILDLQISFVGNCEID--LEIK-------RYFCRAG 214
Query: 183 VTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGW 241
V + + G + V ++ + P + L + F P ++ +T ++ + PG+ G
Sbjct: 215 VKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEIN----WTGLTNLLDIPGLNGL 270
Query: 242 LDKLLSIAFEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
D ++ LV PN + V V + Q + P R+ +EA D++
Sbjct: 271 SDTIILDIISNYLVLPNRITVPLVSEVQIAQ------LRFPIPKGVLRIHFIEAQDLQGK 324
Query: 301 D------LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEV 353
D + G +DPY ++G F++K ++ LSPKW+E + + ++ P L IE+
Sbjct: 325 DTYLKGLVKGKSDPYGIIRVGNQIFQSKVIKENLSPKWNEVYEALV--YEHPGQELEIEL 382
Query: 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D+D DD LG I++ ++ + D W L + G+LHL +
Sbjct: 383 FDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLKL 427
|
May play a role as calcium-regulated intrinsic membrane protein. Mus musculus (taxid: 10090) |
| >sp|Q03640|TCB3_YEAST Tricalbin-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/343 (23%), Positives = 145/343 (42%), Gaps = 39/343 (11%)
Query: 17 FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVR 76
F WL +Y + FI + +V++ R R + + ++ + + + E+
Sbjct: 219 FFSWLFAYIGFSWWSMIFI-FLGTATVYNAEYTRFNRNIRDDLKRVTVEETLSDRVESTT 277
Query: 77 WLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKAL-VQHLYLGRNPPMLTEM 135
WLN + K W I M + SQ++ + P L P AL + LG P + +
Sbjct: 278 WLNSFLSKFWVIYMP-VLSQQVKDNVNPQ-LAGVAPGYGIDALAIDEFTLGSKAPTIKGI 335
Query: 136 RVLRQSNDDDHMVLELGMNF-LTADDMSAILAVKLRKR----------LGFGMWAK---M 181
+ ++ + +E+ +F T D+S + A + R++ LG +K +
Sbjct: 336 KSYTKTGKN---TVEMDWSFAFTPSDVSDMTATEAREKINPKISLGVTLGKSFVSKTMPI 392
Query: 182 HVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--THGLDVTEF-PGI 238
V ++V GK+ + V+F + +P I + + EPP +KPI T GLDV F PG+
Sbjct: 393 LVEDINVAGKMRIKVEFGKAFPNIKIVSLQLLEPPLIDFALKPIGGDTLGLDVMSFLPGL 452
Query: 239 AGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMK 298
++ +++ L PN L ++V+ + Q KE + V + A +K
Sbjct: 453 KSFVKNIINSNIGPMLFPPNHLDINVEDIMAAQS--------KEAIGVLAVTIASADSLK 504
Query: 299 PSD-LNGLADPYVKGQL------GPYRFRTKTQRKTLSPKWHE 334
SD + DPY+ RT + +P+W+E
Sbjct: 505 GSDFITNTVDPYIVMTTEDAVPGTDEEVRTSIKSNVKNPRWNE 547
|
May play a role in membrane trafficking. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
+V VVEA ++ DLNG +DPYV+ QLG R RTK +K L+PKW E+F+ + D +
Sbjct: 4 QVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVD--DLND 61
Query: 348 VLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDM---WIPLQNIKIG 392
LV+ V D+D +F DD +G +++S + D + + W PL K G
Sbjct: 62 ELVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKG 110
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | ||||||
| 255578544 | 765 | conserved hypothetical protein [Ricinus | 0.965 | 0.979 | 0.671 | 0.0 | |
| 359494388 | 771 | PREDICTED: C2 domain-containing protein | 0.951 | 0.957 | 0.633 | 0.0 | |
| 297834336 | 742 | integral membrane single C2 domain prote | 0.884 | 0.924 | 0.657 | 0.0 | |
| 356549572 | 766 | PREDICTED: C2 domain-containing protein | 0.850 | 0.861 | 0.672 | 0.0 | |
| 224061351 | 729 | integral membrane single C2 domain prote | 0.894 | 0.951 | 0.650 | 0.0 | |
| 356549574 | 757 | PREDICTED: C2 domain-containing protein | 0.838 | 0.859 | 0.666 | 0.0 | |
| 449456673 | 730 | PREDICTED: C2 domain-containing protein | 0.841 | 0.894 | 0.677 | 0.0 | |
| 449503642 | 731 | PREDICTED: C2 domain-containing protein | 0.841 | 0.893 | 0.677 | 0.0 | |
| 18404532 | 751 | calcium-dependent lipid-binding domain [ | 0.929 | 0.960 | 0.605 | 0.0 | |
| 15451210 | 751 | Unknown protein [Arabidopsis thaliana] | 0.929 | 0.960 | 0.604 | 0.0 |
| >gi|255578544|ref|XP_002530135.1| conserved hypothetical protein [Ricinus communis] gi|223530360|gb|EEF32251.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1056 bits (2731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/766 (67%), Positives = 623/766 (81%), Gaps = 17/766 (2%)
Query: 1 MSLMEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEER 60
M + E SIMHHVGI+LF+LWLLSYF+RCHP A+FISLIYLY VH+RYVMRLRRK++F+ER
Sbjct: 1 MDITETSIMHHVGIILFVLWLLSYFNRCHPFAFFISLIYLYLVHERYVMRLRRKLQFQER 60
Query: 61 KNSFQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALV 120
K + Q+R L DSE+VRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+V
Sbjct: 61 KQANQKRALSDSESVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVV 120
Query: 121 QHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK 180
QH+YLGR PP+ TEMRVLR+ DDH+VLELGMNF TADDMS++LAVKLR+RLGFGMWAK
Sbjct: 121 QHMYLGRTPPLFTEMRVLRECTGDDHLVLELGMNFCTADDMSSVLAVKLRRRLGFGMWAK 180
Query: 181 MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAG 240
+H+T MHVEGKVL+GVKFL WPF+ RLR+CFAEPPYFQMTVKP+FTHGLDVTE PGIAG
Sbjct: 181 LHMTAMHVEGKVLIGVKFLSHWPFLGRLRICFAEPPYFQMTVKPVFTHGLDVTELPGIAG 240
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
WLDKLLS+AFEQTLV+PNMLVVD++KFASP+P NWFSVD KEP+AY +VEV+EA+DMKPS
Sbjct: 241 WLDKLLSVAFEQTLVQPNMLVVDMEKFASPKPENWFSVDEKEPIAYVKVEVMEATDMKPS 300
Query: 301 DLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360
DLNGLADPYVKGQLG Y+FRTK QRKTL+PKW EEF IPI TWDSPNVLVIEVRDKDHFV
Sbjct: 301 DLNGLADPYVKGQLGSYKFRTKIQRKTLAPKWQEEFKIPICTWDSPNVLVIEVRDKDHFV 360
Query: 361 DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKE 420
DD+LGDC INI+DLRDG RHDMW+PLQNIKIGRLHLAITVLEE+AK + DG TL+KE
Sbjct: 361 DDSLGDCIININDLRDGGRHDMWLPLQNIKIGRLHLAITVLEENAKVGANIFDGDTLSKE 420
Query: 421 GMGNKEDQSNKEDIRESFANETTDKGSF-SSVSSEKSPKVADNFEPINIEGQQETGIWVH 479
M ++SF NET ++ SF SS +S+KSP+V DN EPINIEGQ++TGIWVH
Sbjct: 421 EM------------QDSFINETANRASFSSSTASDKSPRVIDNLEPINIEGQEQTGIWVH 468
Query: 480 QPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGK--- 536
QPG+EV+QTWEPRKGK+ RLD+ RRVP SF S+N SG LNNDSSS+D+N +GK
Sbjct: 469 QPGNEVSQTWEPRKGKSMRLDSRARRVPGDSFGSSNLPVSGPLNNDSSSSDENVDGKSSM 528
Query: 537 NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSI 596
N ++RGLRKI S+F R S+KED GS +AV SP AN++AVN K++GV F+VEDSLSGS
Sbjct: 529 NRVQRGLRKISSVFHRGSKKEDSMGSNEDAVQSPYANIKAVNQKEIGVTFVVEDSLSGST 588
Query: 597 PVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 656
VK + +N+S D PE+P +G+VK AKSI+KHAEK ARSI+H SRK S K RG +S
Sbjct: 589 VVKNSNAVNLSPDGIAPETPGKGNVKDRAKSILKHAEKSARSIRHVLSRKGSRKSRGDSS 648
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPEA 716
VTE E+Y +S+SSDDE L SS++E+IP P ++ DD ++ + + S +
Sbjct: 649 VVTELEIYPESESSDDEELSSSQVEKIPIVSCPTTNTCGNDDADKVEDNVVQVDSVELVT 708
Query: 717 DILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGDLK 762
D GQ +KV+ ++ E D+++V+ G ++ + EF KP+LS+ L+
Sbjct: 709 DTEGQMNKVNVEALESGDENKVSSFSGGNELE-EFSKPQLSDEKLE 753
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494388|ref|XP_002267637.2| PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/759 (63%), Positives = 586/759 (77%), Gaps = 21/759 (2%)
Query: 1 MSLMEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEER 60
MSL EISI+HHV +VL LWLLS HP AYF+SLIYLY VH++Y+MR+RRK++F+ER
Sbjct: 1 MSLTEISIIHHVAMVLIFLWLLSSLSWNHPIAYFVSLIYLYQVHEQYIMRMRRKLQFKER 60
Query: 61 KNSFQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALV 120
K + ++RVL DSE+VRWLNHA+EK+WPICMEQI SQK+LLPIIPWFLEKYKPWTAKKA+V
Sbjct: 61 KEANRKRVLSDSESVRWLNHAVEKIWPICMEQIVSQKILLPIIPWFLEKYKPWTAKKAIV 120
Query: 121 QHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK 180
QHLY+GRNPPM TEMRV+R+S DDDH+VL LGMNFLTADDMSAILA+KLR+RLGFGMWAK
Sbjct: 121 QHLYMGRNPPMFTEMRVIRESTDDDHLVLGLGMNFLTADDMSAILAIKLRRRLGFGMWAK 180
Query: 181 MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAG 240
+H+TGMHVEGKVL+GVKF+R WPFI RLRVCFAEPPYFQMTVKPIFTHGLDVTE PGIAG
Sbjct: 181 LHLTGMHVEGKVLIGVKFIRNWPFIGRLRVCFAEPPYFQMTVKPIFTHGLDVTELPGIAG 240
Query: 241 WLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPS 300
WLDKLL++AFEQTLVEPNMLVVDV+KF SP +WFSVD KEP+A ARVEV+EASDMKPS
Sbjct: 241 WLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVDEKEPIALARVEVLEASDMKPS 300
Query: 301 DLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360
DLNGLADPYVKG+LGPYRF TK Q+KTL+PKW+EEF IPI +W+ PN+LVIEVRDKDHFV
Sbjct: 301 DLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIPICSWELPNMLVIEVRDKDHFV 360
Query: 361 DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKE 420
DDTLG C++NI+DLR GQRHDMW+PL+NIK+GRLHLAITVLE++ + D D L+ +
Sbjct: 361 DDTLGACSLNINDLRGGQRHDMWLPLKNIKMGRLHLAITVLEDNEEEADQLDDEEILDHK 420
Query: 421 GMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQ 480
+ E+ ++ED R S A ET+ + SFSS +SE++ KVAD +EPIN+EGQQETGIWVH
Sbjct: 421 TL--DEEDKDQEDKRNSLARETSLRDSFSS-ASERTSKVADKYEPINLEGQQETGIWVHH 477
Query: 481 PGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGK---- 536
PGSEV+QTWEPRKGK+R +D+ + N SF S NS A GS +ND SSTD+N EGK
Sbjct: 478 PGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIAYGSFHNDGSSTDENSEGKKAQA 537
Query: 537 -NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGS 595
N++RRGL KIG++F RN RKED++ +IGE +PSP +N++ VN+K +GV+FIVED+LS
Sbjct: 538 MNTVRRGLEKIGTVFHRN-RKEDNSSNIGEIIPSPPSNIKEVNSKAIGVRFIVEDNLSKP 596
Query: 596 IPVKATK-DINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGG 654
+ K D + + SG ESPS+G+VK MAK +K A K AR IKHA SRK S K +G
Sbjct: 597 SSAEVPKEDRSPGHEGSGTESPSQGNVKDMAKCFLKQAGKSARGIKHALSRKGSRKSQGD 656
Query: 655 TS-PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSD 713
PV + S S+ +S +E IP P+SS +D KEQ+ +
Sbjct: 657 QEIPV----FDSSDEDSASSSVCTSTMEAIPIISTPISSHG--NDPVAHKEQVVLIGA-- 708
Query: 714 PEADILGQTDKVSADSE--EKKDDDEVNKTEGVDDGQIE 750
P A I + D E E D+ + +EG D +E
Sbjct: 709 PAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDELVE 747
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297834336|ref|XP_002885050.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata] gi|297330890|gb|EFH61309.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/729 (65%), Positives = 571/729 (78%), Gaps = 43/729 (5%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HHV IVL LW+LSY +R H YF+SL+YLY VH+RYVMRLR+K++FEERK +
Sbjct: 1 MECSVIHHVVIVLLFLWVLSYLNRSHALFYFLSLVYLYLVHERYVMRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRWLNHA+EK+WPICMEQIASQK+L PIIPWFL+KY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWLNHAMEKIWPICMEQIASQKILRPIIPWFLDKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPP+LT++RVLRQS DDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YLGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPI THGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAALPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSVDVKEPVAYARVEVVEASDMKPSDL 302
KLLS+AFEQTLVEPNMLVVD++KF SP+PG NWF VD KEPVA+A VEVVEASD+KPSDL
Sbjct: 241 KLLSVAFEQTLVEPNMLVVDMEKFVSPEPGENWFFVDEKEPVAHALVEVVEASDVKPSDL 300
Query: 303 NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362
NGLADPYVKGQLG YRF+TK KTL+PKW EEF IPI TWDSPN+L IEV+DKD F DD
Sbjct: 301 NGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSPNILNIEVQDKDRFTDD 360
Query: 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGM 422
+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAITVLE AK D P +G T+
Sbjct: 361 SLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAITVLENEAKLNDDPFEGVTI----- 415
Query: 423 GNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPG 482
+KED+ SFA++ T KGSFSSV S+KSP+V DN EPINIEGQ+ETGIWVHQPG
Sbjct: 416 -------SKEDMWASFASDVTSKGSFSSVVSDKSPRVPDNMEPINIEGQEETGIWVHQPG 468
Query: 483 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNSIR-- 540
+EV+Q WEPRKGKNR LD +R S S AS S NN+SSSTD+NQEGK++++
Sbjct: 469 TEVSQIWEPRKGKNRCLDNEIR-----GAGSVRSTASTSPNNESSSTDENQEGKSTMKSV 523
Query: 541 -RGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIP 597
RGL+KIG +F RN +KE+ H GSI E + SPR NL+A+N KDVGVKFIVED LSG +
Sbjct: 524 GRGLKKIGLVFHRNGKKEECHHTGSIEEDIRSPRINLKALNQKDVGVKFIVEDRLSGPLT 583
Query: 598 VKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGG-TS 656
++ K N S+ +S +GH+K +AKSI+KHAEK AR +KHAFSRK S K R S
Sbjct: 584 GRSPKGENFGSE----DSQHKGHMKDVAKSILKHAEKSARHLKHAFSRKGSRKSRDDECS 639
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSC-------STRDDNCDTKEQITRT 709
V+E++ ++SDDES SS + D P ++ + DDN +T +
Sbjct: 640 TVSEQDSECQHENSDDESAFSS----VQDLGTPRTAKLEGKSVRAGEDDNVNT----SAN 691
Query: 710 SSSDPEADI 718
S D +ADI
Sbjct: 692 SKDDSKADI 700
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549572|ref|XP_003543166.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/681 (67%), Positives = 552/681 (81%), Gaps = 21/681 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SI+HH GIVL LW+LS F+ CH AYF++LIYL+ VH+RYV RLR+K++FEERK +
Sbjct: 1 MEVSILHHAGIVLIGLWILSAFNWCHTVAYFVALIYLFLVHERYVTRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+E +WPICME I SQK+L PIIPWFLEKYKPWTAK+A+VQHL
Sbjct: 61 NQRRVLSDSETVRWLNHAVENIWPICMENIVSQKILFPIIPWFLEKYKPWTAKEAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP++TE+RVLRQS DDDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMWAK+H+
Sbjct: 121 YMGRNPPLITEVRVLRQS-DDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHI 179
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFL WPFI RLRVCF EPPYFQMTVKP+FTHGLDVTE PGIAGWLD
Sbjct: 180 TGMHVEGKVLVGVKFLPTWPFIGRLRVCFVEPPYFQMTVKPMFTHGLDVTELPGIAGWLD 239
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVDV+KF SPQ +WF V+ KEPVAYA+VEV+EAS+MKPSDLN
Sbjct: 240 KLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVNEKEPVAYAKVEVIEASEMKPSDLN 299
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +PI TW+S NVLVI VRDKDHF DD
Sbjct: 300 GLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVPIITWESDNVLVIAVRDKDHFYDDI 359
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT+LE++ KGVD+ T ++E M
Sbjct: 360 LGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAITILEDNGKGVDTT----TRDQETMD 415
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
+E + + E ANETTD SFS V EKS K+ADN+EPI+I+GQ+ETG+WVH PGS
Sbjct: 416 FEERKISFE------ANETTDNSSFSPVPPEKSEKLADNYEPIDIDGQKETGVWVHHPGS 469
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SIR 540
EV+Q WEPRKGK+RRLDT + PN S S NS SGSLNNDSSS D+N E K+ ++R
Sbjct: 470 EVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTVSGSLNNDSSSPDNNPEEKHRMRTVR 529
Query: 541 RGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKD-VGVKFIVEDSLSGSIPVK 599
+GL KIGS+F R+ R+E +GS+ E + SP N+R+ N K + VKF++++++SG K
Sbjct: 530 KGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIRSENAKGMIAVKFVMDENISGFQTGK 589
Query: 600 ATKDINVSSDESGPESP--SRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSP 657
+ S++ SGPESP ++G+VK MAK+I KHAEK AR ++H S K + G SP
Sbjct: 590 VQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKHAEKSARGLRHVLSCKSRKLKFKGESP 648
Query: 658 -VTERELYVDSDSSDDESLPS 677
V ERE +SDSSD+ES+ +
Sbjct: 649 TVPEREH--ESDSSDEESIAA 667
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061351|ref|XP_002300437.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222847695|gb|EEE85242.1| integral membrane single C2 domain protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/732 (65%), Positives = 576/732 (78%), Gaps = 38/732 (5%)
Query: 6 ISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQ 65
+SI+HH GIVLFLLWLLS F+RCHP A+ +SLIYL+ VH+RYVM+LR+K+++EERK ++Q
Sbjct: 1 MSIIHHAGIVLFLLWLLSSFNRCHPIAFILSLIYLFLVHERYVMKLRKKLQYEERKQAYQ 60
Query: 66 RRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYL 125
+RVL DSETVRWLNH +EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAK+A+V+H+YL
Sbjct: 61 KRVLTDSETVRWLNHTVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKEAVVRHMYL 120
Query: 126 GRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTG 185
GRNPP+ TEMRV RQS DDH+VLELGMNF TADDMSAIL++KLR RLGFGMWA+MH+TG
Sbjct: 121 GRNPPLFTEMRV-RQSTGDDHLVLELGMNFCTADDMSAILSIKLRNRLGFGMWARMHMTG 179
Query: 186 MHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKL 245
+HVEGKVL+GVKFL WPF+ RLRVCFAEPPYFQMTVKPIF GLDVTE PGIAGWLDKL
Sbjct: 180 IHVEGKVLIGVKFLPNWPFLGRLRVCFAEPPYFQMTVKPIFATGLDVTELPGIAGWLDKL 239
Query: 246 LSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGL 305
LS+AFEQTLV+PNMLVVD++KF SP +WFSVD KEPVAYA+VEV+EASDMKPSDLNGL
Sbjct: 240 LSVAFEQTLVQPNMLVVDMEKFVSPGSEDWFSVDEKEPVAYAKVEVIEASDMKPSDLNGL 299
Query: 306 ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365
ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF IPI TW+ PNVL I+VRDKD DD LG
Sbjct: 300 ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFKIPICTWELPNVLAIDVRDKDPLFDDALG 359
Query: 366 DCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMGNK 425
CT++I++L+D RHDMW+PLQNIK+GRLHLAITVLE++A+G D DG TL
Sbjct: 360 VCTVDINELKDLGRHDMWLPLQNIKMGRLHLAITVLEQNAQGGDCSPDGDTL-------- 411
Query: 426 EDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEV 485
KE I++SF ++T ++ SFSS S+EKS +V DNFEPIN+EGQ+ETGIWVH PGSEV
Sbjct: 412 ----TKEQIQDSFVSDTANRASFSSESTEKS-RVPDNFEPINVEGQEETGIWVHHPGSEV 466
Query: 486 AQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNS---IRRG 542
QTWEPRKGK SF S +SA SG LN DSSS ++N EG+N +RG
Sbjct: 467 PQTWEPRKGKT-----------TNSFIS-HSAVSGPLNIDSSSGEENAEGENKRKRFKRG 514
Query: 543 LRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKAT- 601
L+KIGS+F RN++ ED+ SIGE VPSP N++A N +++GVKF+VEDSL S+P
Sbjct: 515 LQKIGSVFHRNAKNEDNLSSIGENVPSPYVNIKATNQREIGVKFVVEDSL--SVPNSGCL 572
Query: 602 KDINVSSDESGPESPS-----RGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 656
++N+ S++S PESP G+ KG+AKSI+KHAEK ARSIKHA SR S++ S
Sbjct: 573 SEVNLGSEKSSPESPQGGNAKGGNAKGIAKSILKHAEKSARSIKHALSRTGSSRSLADPS 632
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPEA 716
VTER++Y +SDSSDD+S S + + + PIP SS DD+ E I + S+P
Sbjct: 633 VVTERDIYPESDSSDDQSRSSPQTKPVVSSPIP-SSTPCNDDSVKPMENIIESGPSEPSI 691
Query: 717 DILGQTDKVSAD 728
+ GQ +KV +
Sbjct: 692 NSGGQMNKVDVE 703
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549574|ref|XP_003543167.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/681 (66%), Positives = 545/681 (80%), Gaps = 30/681 (4%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SI+HH GIVL LW+LS F+ CH AYF++LIYL+ VH+RYV RLR+K++FEERK +
Sbjct: 1 MEVSILHHAGIVLIGLWILSAFNWCHTVAYFVALIYLFLVHERYVTRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+E +WPICME I SQK+L PIIPWFLEKYKPWTAK+A+VQHL
Sbjct: 61 NQRRVLSDSETVRWLNHAVENIWPICMENIVSQKILFPIIPWFLEKYKPWTAKEAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP++TE+RVLRQS DDDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMWAK+H+
Sbjct: 121 YMGRNPPLITEVRVLRQS-DDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKLHI 179
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFL WPFI RLRVCF EPPYFQMTVKP+FTHGLDVTE PGIAGWLD
Sbjct: 180 TGMHVEGKVLVGVKFLPTWPFIGRLRVCFVEPPYFQMTVKPMFTHGLDVTELPGIAGWLD 239
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVDV+KF SPQ +WF V+ KEPVAYA+VEV+EAS+MKPSDLN
Sbjct: 240 KLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVNEKEPVAYAKVEVIEASEMKPSDLN 299
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +PI TW+S NVLVI VRDKDHF DD
Sbjct: 300 GLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVPIITWESDNVLVIAVRDKDHFYDDI 359
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT+LE++ KE M
Sbjct: 360 LGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAITILEDNG-------------KETMD 406
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
+E + + E ANETTD SFS V EKS K+ADN+EPI+I+GQ+ETG+WVH PGS
Sbjct: 407 FEERKISFE------ANETTDNSSFSPVPPEKSEKLADNYEPIDIDGQKETGVWVHHPGS 460
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SIR 540
EV+Q WEPRKGK+RRLDT + PN S S NS SGSLNNDSSS D+N E K+ ++R
Sbjct: 461 EVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTVSGSLNNDSSSPDNNPEEKHRMRTVR 520
Query: 541 RGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKD-VGVKFIVEDSLSGSIPVK 599
+GL KIGS+F R+ R+E +GS+ E + SP N+R+ N K + VKF++++++SG K
Sbjct: 521 KGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIRSENAKGMIAVKFVMDENISGFQTGK 580
Query: 600 ATKDINVSSDESGPESP--SRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSP 657
+ S++ SGPESP ++G+VK MAK+I KHAEK AR ++H S K + G SP
Sbjct: 581 VQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKHAEKSARGLRHVLSCKSRKLKFKGESP 639
Query: 658 -VTERELYVDSDSSDDESLPS 677
V ERE +SDSSD+ES+ +
Sbjct: 640 TVPEREH--ESDSSDEESIAA 658
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456673|ref|XP_004146073.1| PREDICTED: C2 domain-containing protein At1g53590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/675 (67%), Positives = 542/675 (80%), Gaps = 22/675 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SIM HVG VLFLLWLLS F+ CH AAYFISLIYLY VH+R+ ++LRRK++FEERK +
Sbjct: 1 MEVSIMIHVGFVLFLLWLLSAFNCCHVAAYFISLIYLYLVHERFFLKLRRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+VQHL
Sbjct: 61 NQRRVLTDSETVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPPM TEMRVLRQ ++DDH+VLELGMNFLTADDMSAIL VKLRKRLGFGMWAK+H+
Sbjct: 121 YLGRNPPMFTEMRVLRQPSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFLR WP++ R+R+CFAEPPYFQMTVKPIFTHGLDVTE PGIAGWLD
Sbjct: 181 TGMHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVD++KF SPQP NWFSV+VKEPVAY VEVVE +DMKPSDLN
Sbjct: 241 KLLSIAFEQTLVEPNMLVVDMEKFISPQPENWFSVNVKEPVAYVIVEVVEGADMKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQLGPYRFRTK QRKTL P+W EEF IPI TW+S NVL IEVRDKD FVDD
Sbjct: 301 GLADPYVKGQLGPYRFRTKIQRKTLCPQWREEFKIPIVTWESENVLAIEVRDKDTFVDDV 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++ I+DLRDG+RHD+W+PL+NI+ GRLHL ITV E+ K + PC TLN
Sbjct: 361 LGNCSVCIADLRDGRRHDIWLPLENIRTGRLHLGITVFEDRKKVEEYPCQAETLNV---- 416
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
++ + S K + + DK S VS E K DNFEPI+++GQ+ETGIWVH+PGS
Sbjct: 417 DENEVSPKSETK-------NDKDSILPVSMEPE-KGIDNFEPIDVKGQKETGIWVHRPGS 468
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SIR 540
E ++TWEPRKG +RRLDT +RR PN S +S S NDSSSTD++ E K+ S+R
Sbjct: 469 EASKTWEPRKGPSRRLDTKIRREPN---ESVSSGEIKSCTNDSSSTDESLEEKHRKISVR 525
Query: 541 RGLRKIGSMFQRNSRKEDHAGSIGEAVPSPR-ANLRAVNTKDVGVKFIVEDSLSGSIPVK 599
RGLRK+ S+F R+ R E+ +GS+ E SP+ N+RA N + G+K I+ D++S S K
Sbjct: 526 RGLRKLSSVFHRSPRDEERSGSLVEPAKSPQYTNVRAANA-ERGIKVILVDNIS-STADK 583
Query: 600 ATKDINVSSDESGPESPSR-GHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSPV 658
+K+ S+D S ESP + G+VKGMAKSI + AEK ARSI+HAFSRK S + + + +
Sbjct: 584 VSKEGKSSNDGSDSESPGKGGNVKGMAKSIFRQAEKSARSIRHAFSRKGSRRFQIDSLGM 643
Query: 659 TERELYVDSDSSDDE 673
ER+ V+S+SSDDE
Sbjct: 644 NERDAAVESESSDDE 658
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503642|ref|XP_004162104.1| PREDICTED: C2 domain-containing protein At1g53590-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/675 (67%), Positives = 542/675 (80%), Gaps = 22/675 (3%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME+SIM HVG VLFLLWLLS F+ CH AAYFISLIYLY VH+R+ ++LRRK++FEERK +
Sbjct: 1 MEVSIMIHVGFVLFLLWLLSAFNCCHVAAYFISLIYLYLVHERFFLKLRRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSETVRWLNHA+EK+WPICMEQIASQK+LLPIIPWFLEKYKPWTAKKA+VQHL
Sbjct: 61 NQRRVLTDSETVRWLNHAVEKIWPICMEQIASQKILLPIIPWFLEKYKPWTAKKAVVQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPPM TEMRVLRQ ++DDH+VLELGMNFLTADDMSAIL VKLRKRLGFGMWAK+H+
Sbjct: 121 YLGRNPPMFTEMRVLRQPSEDDHLVLELGMNFLTADDMSAILGVKLRKRLGFGMWAKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVLVGVKFLR WP++ R+R+CFAEPPYFQMTVKPIFTHGLDVTE PGIAGWLD
Sbjct: 181 TGMHVEGKVLVGVKFLRDWPYLGRIRLCFAEPPYFQMTVKPIFTHGLDVTELPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLVEPNMLVVD++KF SPQP NWFSV+VKEPVAY VEVVE +DMKPSDLN
Sbjct: 241 KLLSIAFEQTLVEPNMLVVDMEKFISPQPENWFSVNVKEPVAYVIVEVVEGADMKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKGQLGPYRFRTK QRKTL P+W EEF IPI TW+S NVL IEVRDKD FVDD
Sbjct: 301 GLADPYVKGQLGPYRFRTKIQRKTLCPQWREEFKIPIVTWESENVLAIEVRDKDTFVDDV 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++ I+DLRDG+RHD+W+PL+NI+ GRLHL ITV E+ K + PC TLN
Sbjct: 361 LGNCSVCIADLRDGRRHDIWLPLENIRTGRLHLGITVFEDRKKVEEYPCQAETLNV---- 416
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
++ + S K + + DK S VS E K DNFEPI+++GQ+ETGIWVH+PGS
Sbjct: 417 DENEVSPKSETK-------NDKDSILPVSMEPE-KGIDNFEPIDVKGQKETGIWVHRPGS 468
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKN---SIR 540
E ++TWEPRKG +RRLDT +RR PN S +S S NDSSSTD++ E K+ S+R
Sbjct: 469 EASKTWEPRKGPSRRLDTKIRREPN---ESVSSGEIKSCTNDSSSTDESLEEKHRKISVR 525
Query: 541 RGLRKIGSMFQRNSRKEDHAGSIGEAVPSPR-ANLRAVNTKDVGVKFIVEDSLSGSIPVK 599
RGLRK+ S+F R+ R E+ +GS+ E SP+ N+RA N + G+K I+ D++S S K
Sbjct: 526 RGLRKLSSVFHRSPRDEERSGSLVEPAKSPQYTNVRAANA-ERGIKVILVDNIS-STADK 583
Query: 600 ATKDINVSSDESGPESPSR-GHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSPV 658
+K+ S+D S ESP + G+VKGMAKSI + AEK ARSI+HAFSRK S + + + +
Sbjct: 584 VSKEGKSSNDGSDSESPGKGGNVKGMAKSIFRQAEKSARSIRHAFSRKGSRRFQIDSLGM 643
Query: 659 TERELYVDSDSSDDE 673
ER+ V+S+SSDDE
Sbjct: 644 NERDAAVESESSDDE 658
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18404532|ref|NP_564637.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana] gi|332278165|sp|Q93XX4.2|C2D61_ARATH RecName: Full=C2 domain-containing protein At1g53590; AltName: Full=N-terminal-TM-C2 domain type 6 protein 1; Short=NTMC2TYPE6.1 gi|332194846|gb|AEE32967.1| calcium-dependent lipid-binding domain [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/771 (60%), Positives = 567/771 (73%), Gaps = 50/771 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSSDDPL----------- 409
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG+
Sbjct: 410 -KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPGA 465
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---SI 539
EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S+
Sbjct: 466 EVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKSV 515
Query: 540 RRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGSI 596
RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG +
Sbjct: 516 GRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGPL 575
Query: 597 PVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 656
K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 576 SGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGHK 631
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITRT 709
+ S D+ + ++ + P + TRD N + T
Sbjct: 632 EIVPESDSGTDSESSDDDDAFTCVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLAT 687
Query: 710 SSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 760
+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 688 AKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15451210|gb|AAK96876.1| Unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/771 (60%), Positives = 567/771 (73%), Gaps = 50/771 (6%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWP++ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPYLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSSDDPL----------- 409
Query: 424 NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGS 483
K+ + NKEDI+ SFA++TT+ GSF SS+KSP V DNFEPI I+GQ+ET IWV +PG+
Sbjct: 410 -KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPSVVDNFEPIKIDGQEETAIWVQKPGA 465
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEG-KN---SI 539
EV+Q WEPRKGK+RRLD+ ++R PN SL+N SSSTDDNQEG KN S+
Sbjct: 466 EVSQIWEPRKGKSRRLDSQIQRTPNDE----------SLSNGSSSTDDNQEGSKNPMKSV 515
Query: 540 RRGLRKIGSMFQRNSRKEDH-AGSIGE--AVPSPRANLRAVNTKDVGVKFIVEDSLSGSI 596
RGLRKIGSMF RN +KE+ GSI E SPR NL+AVN KDVG+ FIV+D+LSG +
Sbjct: 516 GRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPRINLKAVNQKDVGLNFIVDDNLSGPL 575
Query: 597 PVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTS 656
K+ ++ ++E+ +GH+K +AKS +K AEK A+ IKHAFSRK S K R G
Sbjct: 576 SGKSLDGESLDAEENS----GKGHMKDVAKSFLKQAEKSAKQIKHAFSRKGSMKPRDGHK 631
Query: 657 PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCD-------TKEQITRT 709
+ S D+ + ++ + P + TRD N + T
Sbjct: 632 EIVPESDSGTDSESSDDDDAFTYVKNLATEPGKL----TRDGNIERTGDDDHVDSTTLAT 687
Query: 710 SSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGD 760
+ D DIL + V A E+ K E ++E D IK E +GD
Sbjct: 688 AKEDSSGDILEDSTDVEAKEEKLK---EAAESETRDMDTAMNIKTEDEKGD 735
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 776 | ||||||
| TAIR|locus:2089601 | 737 | NTMC2T6.2 [Arabidopsis thalian | 0.822 | 0.865 | 0.648 | 9.6e-231 | |
| TAIR|locus:2024912 | 751 | NTMC2T6.1 [Arabidopsis thalian | 0.631 | 0.652 | 0.710 | 2.2e-201 | |
| TAIR|locus:2201036 | 560 | NTMC2T2.1 "AT1G05500" [Arabido | 0.444 | 0.616 | 0.236 | 2.8e-19 | |
| TAIR|locus:2095062 | 815 | ATSYTF "AT3G18370" [Arabidopsi | 0.158 | 0.150 | 0.333 | 2.9e-18 | |
| ASPGD|ASPL0000040774 | 1506 | AN9149 [Emericella nidulans (t | 0.476 | 0.245 | 0.239 | 4.5e-17 | |
| ZFIN|ZDB-GENE-050809-35 | 861 | esyt3 "extended synaptotagmin- | 0.390 | 0.351 | 0.237 | 1.7e-16 | |
| TAIR|locus:2184931 | 569 | SYTD "AT5G11100" [Arabidopsis | 0.396 | 0.541 | 0.235 | 4.6e-16 | |
| MGI|MGI:1098699 | 891 | Esyt3 "extended synaptotagmin- | 0.414 | 0.361 | 0.269 | 1e-15 | |
| UNIPROTKB|A0FGR9 | 886 | ESYT3 "Extended synaptotagmin- | 0.417 | 0.365 | 0.256 | 7.6e-15 | |
| UNIPROTKB|A0FGR8 | 921 | ESYT2 "Extended synaptotagmin- | 0.405 | 0.342 | 0.26 | 1.7e-14 |
| TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2226 (788.7 bits), Expect = 9.6e-231, P = 9.6e-231
Identities = 432/666 (64%), Positives = 517/666 (77%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HHV IVL LLW+LSY +R H Y +SL+YLY VH+RYVMRLR+K++FEERK +
Sbjct: 1 MECSVIHHVVIVLLLLWVLSYLNRSHAVFYVLSLVYLYLVHERYVMRLRKKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRWLNHA+E++WPICMEQIASQK+L PIIPWFL+KY+PWTAKK ++QHL
Sbjct: 61 NQRRVLSDSESVRWLNHAVERIWPICMEQIASQKILRPIIPWFLDKYRPWTAKKVVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
YLGRNPP+LT++RVLRQS DDH+VLELGMNFLTADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YLGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLTADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPI THGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSVDVKEPVAYARVEVVEASDMKPSDL 302
KLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF VD KEPVA+A VEVVEA D+KPSDL
Sbjct: 241 KLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFVDEKEPVAHALVEVVEACDVKPSDL 300
Query: 303 NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362
NGLADPYVKGQLG YRF+TK KTL+PKW EEF IPI TWDS N+L IEV+DKD F DD
Sbjct: 301 NGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKIPICTWDSANILNIEVQDKDRFSDD 360
Query: 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGM 422
+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAITVLE+ AK D P +G T+ KE
Sbjct: 361 SLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAITVLEDEAKLNDDPFEGVTICKE-- 418
Query: 423 GNKEDQSNKEDIRESFANETTDKGXXXXXXXXXXPKVADNFEPINIEGQQETGIWVHQPG 482
D+ SFA++ T+KG P+V DN EPINIEGQ+ETGIWVHQPG
Sbjct: 419 ----------DMWASFASDVTNKGSFSSVVSDKSPRVPDNMEPINIEGQEETGIWVHQPG 468
Query: 483 SEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTXXXXXXXXXXXXXXXXXXQEGKNSIRR- 541
+EV+Q WEPRKGK+R LD ++ GS ST QEGK+ ++
Sbjct: 469 TEVSQIWEPRKGKSRCLDNKIQCA--GSVRSTASTSPNNESSSTDKN---QEGKSEMKSV 523
Query: 542 --GLRKIGSMFQRNSRKED--HAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIP 597
GL+KIG +F +N +KE+ H GSI E + SPR NL+A+N KDVGVKFIVED LSG +
Sbjct: 524 GWGLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRINLKALNQKDVGVKFIVEDRLSGPLT 583
Query: 598 VKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGT-S 656
++ K + S++S + H+K +AKSI+KHAEK AR +KHAFS K S K R S
Sbjct: 584 GRSPKGESFDSEDS----QHKRHMKDVAKSILKHAEKSARHLKHAFSHKGSRKSRDDECS 639
Query: 657 PVTERE 662
V+E++
Sbjct: 640 TVSEQD 645
|
|
| TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
Identities = 359/505 (71%), Positives = 424/505 (83%)
Query: 4 MEISIMHHVGIVLFLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNS 63
ME S++HH+ IVL LLW +S +R H YF++LIYLY VH+RYVMRL+RK++FEERK +
Sbjct: 1 MESSLIHHIIIVLLLLWFISSLNRSHAFFYFLALIYLYLVHERYVMRLKRKLQFEERKQA 60
Query: 64 FQRRVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHL 123
QRRVL DSE+VRW+N+A+EK+WPICMEQIASQK+L PIIPWFLEKY+PWTAKKA++QHL
Sbjct: 61 NQRRVLSDSESVRWMNYAVEKIWPICMEQIASQKILGPIIPWFLEKYRPWTAKKAVIQHL 120
Query: 124 YLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHV 183
Y+GRNPP+LT++RVLRQS DDH+VLELGMNFL ADDMSAILAVKLRKRLGFGMW K+H+
Sbjct: 121 YMGRNPPLLTDIRVLRQSTGDDHLVLELGMNFLAADDMSAILAVKLRKRLGFGMWTKLHL 180
Query: 184 TGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLD 243
TGMHVEGKVL+GVKFLRRWPF+ RLRVCFAEPPYFQMTVKPIFTHGLDV PGIAGWLD
Sbjct: 181 TGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIAGWLD 240
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
KLLSIAFEQTLV+PNMLVVD++KF SP NWF VD KEPVA+ VEV EASD+KPSDLN
Sbjct: 241 KLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEASDLKPSDLN 300
Query: 304 GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
GLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IPI TWDSP++L IEV DKD FVDDT
Sbjct: 301 GLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIPIFTWDSPSILNIEVGDKDRFVDDT 360
Query: 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKGVDSPCDGGTLNKEGMG 423
LG+C++NI + R GQR+DMW+ LQNIK+GRLHLAITV+E++AK D P
Sbjct: 361 LGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAITVIEDNAKSSDDPL----------- 409
Query: 424 NKEDQSNKEDIRESFANETTDKGXXXXXXXXXXPKVADNFEPINIEGQQETGIWVHQPGS 483
K+ + NKEDI+ SFA++TT+ G P V DNFEPI I+GQ+ET IWV +PG+
Sbjct: 410 -KKAKLNKEDIQTSFASDTTNLGSFSSDKS---PSVVDNFEPIKIDGQEETAIWVQKPGA 465
Query: 484 EVAQTWEPRKGKNRRLDTLVRRVPN 508
EV+Q WEPRKGK+RRLD+ ++R PN
Sbjct: 466 EVSQIWEPRKGKSRRLDSQIQRTPN 490
|
|
| TAIR|locus:2201036 NTMC2T2.1 "AT1G05500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 262 (97.3 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 90/380 (23%), Positives = 177/380 (46%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + + WLNH + K+WP +++ AS+ + + P LE+Y+P L LG
Sbjct: 64 VFSERQKLTWLNHHLTKIWPY-VDEAASELIKASVEP-VLEQYRPAIVASLTFSKLTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAK-MHVTGM 186
P T + V+ D + + LEL M + + + +L VK + + K + TG+
Sbjct: 122 VAPQFTGVSVI--DGDKNGITLELDMQW--DGNPNIVLGVKTLVGVSLPIQVKNIGFTGV 177
Query: 187 HVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
L+ + +P + V E T+K + G D++ PG++ +++ +
Sbjct: 178 FR----LIFRPLVEDFPCFGAVSVSLREKKKLDFTLKVV---GGDISAIPGLSEAIEETI 230
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P V+ + PG++ +++K PV V++V+A ++ DL G +
Sbjct: 231 RDAVEDSITWPVRKVIPII------PGDYSDLELK-PVGMLEVKLVQAKNLTNKDLVGKS 283
Query: 307 DPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDD 362
DP+ K + P R +TK T L+P W+E F + + + LV+ + D + +
Sbjct: 284 DPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDASTQH-LVVRIYDDEGVQASE 342
Query: 363 TLGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLAITVLEE-SAKGVDSPCD 413
+G I + +L G+ D+W+ L ++++I G +HL + + S G+ +P
Sbjct: 343 LIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLELLYIPYGSGNGIVNPFV 402
Query: 414 GGTLNKEGMGNKEDQSNKED 433
++ K D +++E+
Sbjct: 403 TSSMTSLERVLKNDTTDEEN 422
|
|
| TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 44/132 (33%), Positives = 69/132 (52%)
Query: 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350
+VEA D+ +D+ G +DPYV+ Q G + RTK KTL PKW++ P D + L
Sbjct: 611 LVEARDLVAADIRGTSDPYVRVQYGEKKQRTKVIYKTLQPKWNQTMEFP----DDGSSLE 666
Query: 351 IEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT--VLEESAKG 407
+ V+D + + ++G+C + L+ + D WI LQ +K G +H+ +T V E +
Sbjct: 667 LHVKDYNTLLPTSSIGNCVVEYQGLKPNETADKWIILQGVKHGEVHVRVTRKVTEIQRRA 726
Query: 408 VDSPCDGGTLNK 419
P G NK
Sbjct: 727 SAGP--GTPFNK 736
|
|
| ASPGD|ASPL0000040774 AN9149 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 97/405 (23%), Positives = 178/405 (43%)
Query: 10 HHVGIVLFLL---WLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQR 66
H+ G+++F W+++ A FI + + + + R+RR + + ++
Sbjct: 178 HNAGVIVFACLSSWIVAVLGG-GLAWVFIIMAACGTYYRTSIRRVRRNFRDDVNREMAKQ 236
Query: 67 RVLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLG 126
R+ D+E++ W+N + K WPI + ++ + L P ++ LG
Sbjct: 237 RLETDTESLEWINSFLVKFWPIYAPVMCDT--IINSVDQVLSTATPAFLDSLRLKTFILG 294
Query: 127 RNPPMLTEMRVLRQSNDDDHMVLELGMNFLTAD--DMSAILA-------VKLRKRLGFGM 177
PP L ++ ++ + D ++++ +F D D++A V L R+G G+
Sbjct: 295 SKPPRLEHVKTYPKT-EVDTVIMDWKFSFTPNDTMDLTARQVKDKINPKVVLEVRVGKGV 353
Query: 178 WAK---MHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--THGLDV 232
+K + V M G + V VK +P I+R+ VCF P KP+ T G D+
Sbjct: 354 VSKGLDVIVEDMACSGLMRVKVKLQIPFPHIERVDVCFLGRPELDYVCKPLGGDTLGFDI 413
Query: 233 TEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVV 292
PG+ ++ + + + EPN+ +++ K + GN +VD + + V +
Sbjct: 414 NFIPGLESFIKEQIHANLGPMMYEPNVFPIEIAKMLA---GN--AVD--QAIGVVAVTLH 466
Query: 293 EASDMK-PSDLNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDSPNVL 349
A +K P G DPY L RTKT + T SP+W+E + I+++ + L
Sbjct: 467 GARQLKNPDKFAGTPDPYAVVSLNNRTEVGRTKTIQDTDSPRWNETIYVIITSFT--DTL 524
Query: 350 VIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393
I+ D + F D LG T + L H+ + L+ + GR
Sbjct: 525 TIQPYDWNEFRKDKELGTATFALDKLEQEPEHES-VYLEVLASGR 568
|
|
| ZFIN|ZDB-GENE-050809-35 esyt3 "extended synaptotagmin-like protein 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 80/337 (23%), Positives = 159/337 (47%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPP 130
D E W+N +++ WP + +KLL+ I + P K +++G+ P
Sbjct: 109 DVEKAAWINKILQQSWPFF--GVYMEKLLIENIQTVVRSVHPHL-KTFTFTKVHMGQKAP 165
Query: 131 MLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMHVEG 190
+T +R + ++L+L + + D+ A + + + K+ + G+ ++G
Sbjct: 166 TITGIRAYTDELETREVILDLNIVYEADVDIDA----DVNRAI------KVGIKGLQLQG 215
Query: 191 KVLVGVK-FLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIA 249
+ V ++ + + P + + + F P Q+ +T +V + PG++ + +
Sbjct: 216 MLRVILEPLIGQAPLVGGVTMFFIRRPALQIN----WTGVTNVLDGPGLSHLSESAIVDV 271
Query: 250 FEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDM--KPSDLNGL- 305
+V PN + +D+ Q F + P RV V+EA D+ K S + GL
Sbjct: 272 IASLMVLPNRMCFPLIDQVKVEQMR--FPL----PRGVVRVHVLEARDLVAKDSHMMGLV 325
Query: 306 ---ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKDHFVD 361
+DPY ++G F+TKT ++TL+P+W+E + I ++P L +E+ D+D D
Sbjct: 326 KGKSDPYTVLRVGNKHFKTKTIKETLNPRWNEVYEFVIH--EAPGQELEVELYDEDKDAD 383
Query: 362 DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398
D LG +++ D+R + D W L++I+ G++H +
Sbjct: 384 DFLGRFSMDCGDVRKDREIDKWYTLEDIESGQIHFKL 420
|
|
| TAIR|locus:2184931 SYTD "AT5G11100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 78/331 (23%), Positives = 149/331 (45%)
Query: 68 VLKDSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGR 127
V + + WLN +EK+WP E A+ +L+ + LE+Y P LG
Sbjct: 64 VFSQRQKLNWLNLELEKIWPYVNE--AASELIKSSVEPVLEQYTPAMLASLKFSKFTLGT 121
Query: 128 NPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWAKMHVTGMH 187
P T + +L + + + +EL M + D + + + ++ LG + + V +
Sbjct: 122 VAPQFTGVSILESESGPNGITMELEMQW----DGNPKIVLDVKTLLGVSL--PIEVKNIG 175
Query: 188 VEGKV-LVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLL 246
G L+ + +P L E T+K I G ++T PGI+ +++ +
Sbjct: 176 FTGVFRLIFKPLVDEFPCFGALSYSLREKKGLDFTLKVI---GGELTSIPGISDAIEETI 232
Query: 247 SIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLA 306
A E ++ P ++ + PG++ +++K PV V+VV+A D+ D+ G +
Sbjct: 233 RDAIEDSITWPVRKIIPI------LPGDYSDLELK-PVGKLDVKVVQAKDLANKDMIGKS 285
Query: 307 DPYVKGQLGPYRFRTK---TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363
DPY + P RTK T +L+P W+E F + + ++ V D+
Sbjct: 286 DPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDVSTQHLTVRVFDDEGVGSSQL 345
Query: 364 LGDCTINISDLRDGQRHDMWIPL-QNIKIGR 393
+G + +++L G+ D+W+ L ++++I R
Sbjct: 346 IGAAQVPLNELVPGKVKDIWLKLVKDLEIQR 376
|
|
| MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 99/368 (26%), Positives = 166/368 (45%)
Query: 50 RLRRKVEFEERKNSFQRRVLKDSETVRWLNHA-IEKM-WPICMEQIASQKLLLPIIPWFL 107
RL EF E + F R L+ W++ +E++ W +I Q + P + +
Sbjct: 86 RLEAAFEFLEHEREFISRELRGQHLPAWIHFPDVERVEWA---NKIIIQ--IWPYLSMIM 140
Query: 108 E-----KYKPWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156
E K +P +K++ LY G+ P + ++V + + L+L + ++
Sbjct: 141 ENKIREKLEPKIREKSIHLRTFTFTKLYFGQKCPKVNGVKVHTDKRNRRKVTLDLQICYI 200
Query: 157 TADDMSAILAVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEP 215
++S V+L+K G G V+G+ ++G + V ++ L PFI + V F +
Sbjct: 201 GDCEIS----VELQKIRG-G------VSGVQLQGTLRVILEPLLVDKPFIGAVTVFFLQK 249
Query: 216 PYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNW 275
P+ Q+ + T+ LD+ PGI D LL LV PN + V V K
Sbjct: 250 PHLQINWTGL-TNLLDM---PGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVT---- 301
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPK 331
++ V P RV ++EA + D L G +DPY K +G R++T K L+P
Sbjct: 302 -NLRVPLPCGVIRVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPT 360
Query: 332 WHEEFNIPISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK 390
W+E F + ++ P L +++ D+D DD LG I + D+ + D W L +
Sbjct: 361 WNEVFEFMV--YEVPGQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTT 418
Query: 391 IGRLHLAI 398
GRLHL +
Sbjct: 419 SGRLHLRL 426
|
|
| UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 225 (84.3 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 94/366 (25%), Positives = 165/366 (45%)
Query: 50 RLRRKVEFEERKNSFQRRVLKDSETVRWLNHA-IEKM-WPICMEQIASQK---LLLPIIP 104
RL EF + + F R L+ W++ +E++ W +I SQ L + +
Sbjct: 82 RLAAAFEFLDNEREFISRELRGQHLPAWIHFPDVERVEWA---NKIISQTWPYLSMIMES 138
Query: 105 WFLEKYKPWTAKKAL------VQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTA 158
F EK +P +K++ LY G+ P + ++ + + + ++L + ++
Sbjct: 139 KFREKLEPKIREKSIHLRTFTFTKLYFGQKCPRVNGVKAHTNTCNRRRVTVDLQICYIGD 198
Query: 159 DDMSAILAVKLRKRLGFGMWAKMHVTGMHVEGKVLVGVK-FLRRWPFIDRLRVCFAEPPY 217
++S V+L+K + V G+ ++G + V ++ L PF+ + V F + P+
Sbjct: 199 CEIS----VELQK-------IQAGVNGIQLQGTLRVILEPLLVDKPFVGAVTVFFLQKPH 247
Query: 218 FQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFS 277
Q+ + T+ LD PGI D LL LV PN + V V K + +
Sbjct: 248 LQINWTGL-TNLLDA---PGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTN 298
Query: 278 VDVKEPVAYARVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWH 333
+ P RV ++EA + D L G +DPY K +G FR++T + L+P W+
Sbjct: 299 LRFPLPCGVIRVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWN 358
Query: 334 EEFNIPISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
E F + ++ P L +++ D+D DD LG I + D+ + D W L + G
Sbjct: 359 EVFEFMV--YEVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSG 416
Query: 393 RLHLAI 398
RLHL +
Sbjct: 417 RLHLRL 422
|
|
| UNIPROTKB|A0FGR8 ESYT2 "Extended synaptotagmin-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 222 (83.2 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 91/350 (26%), Positives = 163/350 (46%)
Query: 71 DSETVRWLNHAIEKMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPP 130
D+E WLN ++ MWP + I +KL I + + + + + +G+ P
Sbjct: 191 DTERAEWLNKTVKHMWPFICQFI--EKLFRETIEPAVRGANTHLSTFSFTK-VDVGQQPL 247
Query: 131 MLTEMRVLRQSNDDDHMVLELGMNFLTADDMSAILAVKLRKRLGFGMWA-KMHVTGMHVE 189
+ ++V ++ D ++L+L ++F+ ++ L +K R G+ + ++H T M V
Sbjct: 248 RINGVKVYTENVDKRQIILDLQISFVGNCEID--LEIK-RYFCRAGVKSIQIHGT-MRVI 303
Query: 190 GKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIA 249
+ L+G P + L + F P ++ + T+ LDV PG+ G D ++
Sbjct: 304 LEPLIG-----DMPLVGALSIFFLRKPLLEINWTGL-TNLLDV---PGLNGLSDTIILDI 354
Query: 250 FEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD--LNGL- 305
LV PN + V V + Q F V P R+ +EA D++ D L GL
Sbjct: 355 ISNYLVLPNRITVPLVSEVQIAQLR--FPV----PKGVLRIHFIEAQDLQGKDTYLKGLV 408
Query: 306 ---ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKDHFVD 361
+DPY ++G F+++ ++ LSPKW+E + + ++ P L IE+ D+D D
Sbjct: 409 KGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALV--YEHPGQELEIELFDEDPDKD 466
Query: 362 DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT--VLEESAKGVD 409
D LG I++ ++ + D W L + G+LHL + L +A +D
Sbjct: 467 DFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLD 516
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93XX4 | C2D61_ARATH | No assigned EC number | 0.6057 | 0.9291 | 0.9600 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| NTMC2T6.1 | NTMC2T6.1; NTMC2T6.1; LOCATED IN- plasma membrane, vacuole; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- C2 membrane targeting protein (InterPro-IPR018029), C2 calcium/lipid-binding region, CaLB (InterPro-IPR008973), C2 calcium-dependent membrane targeting (InterPro-IPR000008); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G14590.2); Has 4658 Blast hits to 3860 proteins in 257 species- Archae - 0; Bacteria - 64; Metazoa - 2751; Fungi - 514; Plants - 693; Viruses - 7; Other Eukaryotes - 629 (source- NCBI BLink). (751 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| AT3G30390 | amino acid transporter family protein; Encodes a putative amino acid transporter. (460 aa) | • | 0.871 | ||||||||
| PHOS34 | universal stress protein (USP) family protein; Contains a universal stress protein domain. Prot [...] (260 aa) | • | 0.788 | ||||||||
| AT3G17020 | universal stress protein (USP) family protein; universal stress protein (USP) family protein; F [...] (163 aa) | • | 0.786 | ||||||||
| AT3G28580 | AAA-type ATPase family protein; AAA-type ATPase family protein; FUNCTIONS IN- nucleoside-tripho [...] (500 aa) | • | 0.716 | ||||||||
| TOM3 | TOM3; protein binding; Necessary for the efficient multiplication of tobamoviruses. (303 aa) | • | 0.679 | ||||||||
| PUB13 | PUB13 (PLANT U-BOX 13); ubiquitin-protein ligase; Encodes a protein containing a UND, a U-box, [...] (660 aa) | • | 0.659 | ||||||||
| AT2G41190 | amino acid transporter family protein; amino acid transporter family protein; FUNCTIONS IN- ami [...] (536 aa) | • | 0.657 | ||||||||
| ERF1-1 | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1); translation release factor; Encodes a eukaryotic releas [...] (436 aa) | • | 0.599 | ||||||||
| AT2G44310 | calcium-binding EF hand family protein; calcium-binding EF hand family protein; FUNCTIONS IN- c [...] (142 aa) | • | 0.565 | ||||||||
| AT1G07040 | unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- chloropl [...] (371 aa) | • | 0.565 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 776 | |||
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-29 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 3e-25 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 4e-21 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-20 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-19 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 7e-19 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-18 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-16 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-13 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-13 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-12 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-12 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 2e-12 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 3e-12 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 7e-12 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-11 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-11 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 3e-11 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 8e-11 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-10 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 5e-10 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 6e-10 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 6e-10 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 2e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-09 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 2e-09 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-09 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 1e-08 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 4e-08 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 7e-08 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 8e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 8e-08 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 8e-08 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-07 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 2e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-07 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 8e-07 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 8e-07 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 1e-06 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-06 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 4e-06 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 9e-06 | |
| cd08401 | 121 | cd08401, C2A_RasA2_RasA3, C2 domain first repeat p | 2e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-05 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 2e-05 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 3e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-04 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 1e-04 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 1e-04 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 1e-04 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 3e-04 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 4e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 4e-04 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 0.003 | |
| PLN03008 | 868 | PLN03008, PLN03008, Phospholipase D delta | 0.004 | |
| cd04021 | 125 | cd04021, C2_E3_ubiquitin_ligase, C2 domain present | 0.004 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-29
Identities = 96/419 (22%), Positives = 190/419 (45%), Gaps = 56/419 (13%)
Query: 10 HHVGIVLFLL---WLLSYFDRCHPAAYFI--SLIYLYSVHDRYVMRLRRKVEFEERKNSF 64
V IVL W+ Y + +FI +Y+Y + R+RR + ++
Sbjct: 156 QSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMYVYRTCIK---RVRRNIRDLVQQELS 212
Query: 65 QRRVLKDSETVRWLNHAIEKMWPICMEQIASQ------KLLLPIIPWFLEKYKPWTAKKA 118
+ ++ D E+V WLN ++K WPI I+ Q + L IP F+
Sbjct: 213 EEKLENDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAEAIPSFI--------DAL 264
Query: 119 LVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTAD--DMSA---------ILAV 167
+ LG PP + +R S + D +V+++ +F D D++A +++
Sbjct: 265 ALDEFTLGSKPPRIDGIRSY-PSTESDTVVMDVDFSFTPHDISDVTATSARASVNPKISL 323
Query: 168 KLRKRLGFGMWAKMHVT--GMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPI 225
++K FG + + + +G+V V V+ + ++PFI + E P F + P+
Sbjct: 324 VVKKGKSFGS-FTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPL 382
Query: 226 --FTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEP 283
G+D+ PG++ ++ ++++ L+ PN L +D+ + + G
Sbjct: 383 GGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGT--------A 434
Query: 284 VAYARVEVVEASDMKPSD--LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPI 340
+ V++ A +K SD +NG DPY+ +T+ ++ TL+P W+E F I +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494
Query: 341 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIK-IGRLH 395
+++ P L + + D + F D +G ++++ L ++++++ L+N K +GRL
Sbjct: 495 NSFTDP--LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLT 551
|
Length = 1227 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-25
Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
RV V+EA ++ DLNG +DPYVK LG +F+TK + TL+P W+E F P+ +S
Sbjct: 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES- 60
Query: 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHDMWIPL 386
+ L +EV DKD F DD LG+ I +S+L D G+ ++W+PL
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-21
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWD 344
V+++ A ++ P D G +DPYVK L + +TK + TL+P W+E F + +
Sbjct: 3 TVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE 62
Query: 345 SPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 383
L IEV DKD F DD +G TI +SDL G RH+
Sbjct: 63 L-AELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 9/116 (7%)
Query: 288 RVEVVEASDMKPSDLN------GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
R+ V+EA D+ D G +DPYV ++G F++K ++ L+PKW+E + +
Sbjct: 4 RIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVD 63
Query: 342 TWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396
+ P L IE+ D+D DD LG +I++ + D W+PL+++K GRLHL
Sbjct: 64 --EVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-19
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 3/115 (2%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
+ +VE ++ P D NGL+DPYVK +LG ++++K KTL+P+W E+F++ + D
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFD-DQS 60
Query: 347 NVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+L IEV DKD D+ +G C I++S L Q H + + L G L L +T+
Sbjct: 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-EDGEGSLLLLLTL 114
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 7e-19
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWD 344
RV V+ A ++ P DLNG +DPYVK LG + +TK + TL+P W+E F ++ +
Sbjct: 2 RVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPE 61
Query: 345 SPNVLVIEVRDKDHF-VDDTLGDCT 368
L IEV D D F DD +G+ T
Sbjct: 62 L-AELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 7e-18
Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 8/115 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
V+V+ A ++ +D NG +DP+VK L G F+TKT +KTL+P W+E F +P+ +
Sbjct: 2 TVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS-RVR 60
Query: 347 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL---QNIKIGRLHL 396
VL +EV D D DD LG I++SDL + ++ +PL K+G + L
Sbjct: 61 AVLKVEVYDWD-RGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-16
Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPISTW 343
VEV EA ++ P D NGL+DPYVK +L P + +TKT +KTL+P W+E F +
Sbjct: 17 VEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPA 76
Query: 344 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLH 395
D L IEV D D +D +G + +S+L D W L N + G +
Sbjct: 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQEEGEYY 128
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 288 RVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
RV VVEA D+ D G +DPY +G RF+T+T TL+PKW+ PI + +
Sbjct: 4 RVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQN 63
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ-------NIKIGRL 394
+L + + DKD F D LG+ I + ++ + D WI L+ ++ G +
Sbjct: 64 Q-LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122
Query: 395 HLAITV 400
HL +
Sbjct: 123 HLQFSW 128
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 7e-13
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFN-IPIST 342
++ A +K D NGL+DPYVK L P + RTKT KT +P+++E I+
Sbjct: 19 CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78
Query: 343 WDSPN-VLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386
D L + V D+D F +D LG+ I + L+ Q I L
Sbjct: 79 EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346
+ + E ++ D G +DPYVK + G +++KT K L+P W E+F +PI P
Sbjct: 3 DIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQP 62
Query: 347 NVLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQN----IKIGRLHLAITV 400
L I+V D D DD +G +++S L + ++ + L++ +G + L +T+
Sbjct: 63 --LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-12
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNI----PI 340
Y RV V+EA D+ PSD N + + +VK QLG RT+ Q + +P W+EE P
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 341 STWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQR--HDMWIPLQNI------- 389
D + V + + D+ LG I ++D+ R R W L+
Sbjct: 61 E--DHLILSVEDRVGPNK--DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQK 116
Query: 390 KI----GRLHLAIT------VLEESA 405
K R+HL + VL+ES
Sbjct: 117 KKRKFASRIHLRLCLDGGYHVLDEST 142
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 2e-12
Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-YRF------RTKTQRKTLSPKWHEEFNIPI 340
RVE++ A ++ P D NG +DP+VK +L P + F +T+ ++KTL P + E F +
Sbjct: 19 RVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV 78
Query: 341 STWDSPN---VLVIEVRDKDHF-VDDTLGDCTINISDL 374
+L+ V+D D +D G+ + ++D+
Sbjct: 79 PPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-12
Identities = 60/234 (25%), Positives = 94/234 (40%), Gaps = 27/234 (11%)
Query: 244 KLLSIAFEQTLV--EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD 301
L+S A+E+ P V V +P P V++ E Y + + ++ SD
Sbjct: 997 DLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSD 1056
Query: 302 LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF- 359
NG +DP+VK L ++TK +KTL+P W+EEF I + +VL I V D D
Sbjct: 1057 ENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN-RVKDVLTINVNDWDSGE 1115
Query: 360 VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT------------------VL 401
+D LG I++S L G + IPL L + +L
Sbjct: 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTLHPGFNFRSKYALNVSRKEGIL 1175
Query: 402 EESAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEK 455
+ AK V + G+ +G K + ++ + K +S EK
Sbjct: 1176 GDIAKKVGTGLKAGSTTVGSVGVKAVGGVADGVKGGKGIISGGKK----ISEEK 1225
|
Length = 1227 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 7e-12
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWD 344
V V+ A+++ DL D YV+ L + RTKT + +++P W+E F I +
Sbjct: 3 TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS-Q 61
Query: 345 SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRH 380
NVL + V D+D+ +DD LG ++S L+ G++
Sbjct: 62 VKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKV 97
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 31/118 (26%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRF-----RTKTQRKTLSPKWHEEF---NIP- 339
V V++A D+ P D L +PYVK L P R RTKT +KTL+P+W++ F N+
Sbjct: 20 VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79
Query: 340 ---------ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLR-DGQRHDMWIPLQ 387
++ WD RD + +D LG+ I+++D D + H W PLQ
Sbjct: 80 ETLKERTLEVTVWDYD-------RDGE---NDFLGEVVIDLADALLDDEPH--WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-11
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 15/124 (12%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
+ +V+V+ AS + +D+ G +DP+ +L R +T T KTL+P+W++ F PI D
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI--KDI 59
Query: 346 PNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEES 404
+VL + V D+D + LG I + +++G+R W L++ K L
Sbjct: 60 HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYALKDKK----------LRTR 107
Query: 405 AKGV 408
AKG
Sbjct: 108 AKGS 111
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-11
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 39/138 (28%)
Query: 286 YARVEVVEASDMKPSDLNG----------LADPYVKGQLGPYRF-RTKTQRKTLSPKWHE 334
++++ EA D+KP+D + L DPYV + +T T+ KT SP W+E
Sbjct: 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64
Query: 335 EFNIPISTWDSPNVLVIEVRDKDH-----FVDDTLGD------CTINISDLRDGQRH--D 381
EF EV + + F D +G CTI+ DL D
Sbjct: 65 EF-------------TTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFD 111
Query: 382 MWIPLQNIKIGRLHLAIT 399
+W+ L+ G+LH+ I
Sbjct: 112 LWVDLE--PQGKLHVKIE 127
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ ++ D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 17 VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76
Query: 344 DSPN-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWI 384
D L I V DKD +D +G + I+ + RH W+
Sbjct: 77 DLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRH--WL 117
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-10
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWDS 345
V +++A+D+ D+ G +DPYVK L P + F TK RKTL+P ++E F + +
Sbjct: 20 VGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79
Query: 346 PN-VLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMW 383
N LV V D D F D +G+ + + + G + W
Sbjct: 80 GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW 119
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 5e-10
Identities = 32/118 (27%), Positives = 67/118 (56%), Gaps = 5/118 (4%)
Query: 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRF---RTKTQRKTLSPKW 332
FS++ + + V++++A +++P D +G ADPY K +L P R ++K +KTL+P++
Sbjct: 7 FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEF 66
Query: 333 HEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
E F + + P L + + D D F D+ +G + ++++ ++ D+W +Q+
Sbjct: 67 DESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-10
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 288 RVEVVEASD-MKPSDLNG-LADPYVK------GQLGPYRFRTKT-QRKTLSPKWHEEFNI 338
++++ KP G + DPYV+ +F+TK + +P W+E F
Sbjct: 5 TIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEF 64
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
++ + L V D+D DD LG + + LR G RH +PL + K L L+
Sbjct: 65 DVTVPEL-AFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRH---VPLLDSKGEPLELS 119
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-10
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V++A ++ PSD GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 18 VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77
Query: 344 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380
V LVI V DKD ++ +G + + H
Sbjct: 78 QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 14/97 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---------FRTKTQRKTLSPKWHEEFNI 338
RV+V+ D+ D+ G +DPYVK L Y +TKT +KTL+PKW+EEF
Sbjct: 3 RVKVLAGIDLAKKDIFGASDPYVKISL--YDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60
Query: 339 PISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374
++ + L+ EV D++ DD LG + +++L
Sbjct: 61 RVNP--REHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
+V VV +++ D +DPYV LG + +T+ +K L+P W+EE + + +
Sbjct: 5 KVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP--NPMA 61
Query: 348 VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 382
L +EV DKD F DD++G+ I++ L + + D
Sbjct: 62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDH 97
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346
V +VE D+KP + NG +DPY + +G +TK TL+PKW ++ D
Sbjct: 18 MVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKW--NSSMQFFVKDLEQ 75
Query: 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLR 375
+VL I V D+D F DD LG I ++D+
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVADIL 105
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYV-------KGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 341
+ +V A ++K NGL+DPYV K ++ +T+T TL+P+W EEF + +
Sbjct: 5 IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIA----KTRTIYDTLNPRWDEEFELEVP 60
Query: 342 TWDSPNVLVIEVRDKDHFVD-DTLGDCTINISDLR---DGQRHDMWIPLQNIKIGRLHLA 397
P + V D+ D G ++ + R DG ++W+ L + + GRL L
Sbjct: 61 A-GEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-DTQ-GRLLLR 117
Query: 398 ITV 400
+++
Sbjct: 118 VSM 120
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 342
P +V V A + D G ADPYV + R+ Q+ TLSP++ +
Sbjct: 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK 60
Query: 343 WDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHD 381
SP + I+V + + D+ LG T++
Sbjct: 61 PRSP--IKIQVWNSNLLCDEFLGQATLSADPNDSQTLRT 97
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNI----PIS 341
RV VV A +++P D NG +DPY+K +LG + R TL+P + + F + P +
Sbjct: 3 RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISD 373
+ +L I V D D DD +G+ I++ D
Sbjct: 63 S-----ILKISVMDYDLLGSDDLIGETVIDLED 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-08
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 307 DPYVKGQLGPYRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365
DPY ++G +TKT + P+W EE I+ D +L + V D D D +G
Sbjct: 23 DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DKKPILKVAVFDDDKRKPDLIG 81
Query: 366 DCTINISDLRDGQRHDMWIPLQN 388
D +++S D W L
Sbjct: 82 DTEVDLSPALKEGEFDDWYELTL 104
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
VEVV+A D+ P D G + YV+ + RT+T+ K L+P W+E+ +S +
Sbjct: 4 VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSN 63
Query: 349 LVIEV 353
LV+EV
Sbjct: 64 LVLEV 68
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-08
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE--FNIPISTWD 344
+V V++A + +G D YV QLG ++ T + KT SP W EE F +P
Sbjct: 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSG 60
Query: 345 SPN--VLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQN 388
+ N L + V ++ +D LG +I ++DL G+R W L++
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-08
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 288 RVEVVEASDMKPSDLN-GLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPIS-- 341
V + A+D+ +D G +DPYV G + T+ RK L+P W E + + ++
Sbjct: 4 VVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPD 63
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 374
+ L + D D F DD LG I++ +L
Sbjct: 64 EVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 8/106 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNI---PIST 342
+++++A ++ D +G +DP+VK L P ++ TK +RK L+P W+E F P
Sbjct: 20 LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79
Query: 343 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
VL ++V D D F +D +G+ ++ ++ + + W L+
Sbjct: 80 LQQ-RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 300 SDLNGLADPYVK----GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355
GL PY + G+L + T+ ++KT +P W+ ++ + + + V+D
Sbjct: 7 ESKTGLLSPYAELYLNGKL---VYTTRVKKKTNNPSWNASTEFLVTDRRK-SRVTVVVKD 62
Query: 356 KDHFVDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGRLHL 396
D LG +I+++DL D W PL GR+ +
Sbjct: 63 DRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF---------NIP 339
+ VV A + D G +DPYV Q+G + RTKT + L+P W+E+F I
Sbjct: 5 ITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIK 64
Query: 340 ISTWDSPNVLVIEVRDK-DHFVDDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ WD + + ++ K DD LG I + L G+ D+W L+
Sbjct: 65 VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLE 111
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-07
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHE--EFNIPISTWDS 345
R V+EA D+ P D NG +DP+V+ T +K+ P+W+E EF + +
Sbjct: 3 RCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG---A 59
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L +EV D D +D LG +I L+ ++ + W L
Sbjct: 60 DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-07
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 289 VEVVEASDMKPSD-LNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDS 345
V + A +K SD + G DPYV + R RTK ++ T +P W+E I +++
Sbjct: 6 VTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTE 65
Query: 346 PNVLVIEVRDK-DHFVDDTLGDCTINISDLRD 376
P L + V D D D +G ++S L
Sbjct: 66 P--LNLTVYDFNDKRKDKLIGTAEFDLSSLLQ 95
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-06
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 287 ARVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
R+ + +A+D+K + G DPYV+ + G + RT T TL+P W E +P++ S
Sbjct: 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT---S 59
Query: 346 PN-VLVIEVRDKDHFVDD-TLGDCTINISDL 374
PN + +EV D + D +LG IN+SDL
Sbjct: 60 PNQKITLEVMDYEKVGKDRSLGSVEINVSDL 90
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL--GPYRF---RTKTQRKTLSPKWHEEF--NIPIS 341
V +++A ++K D+NG +DPYVK L R +T +++TL+P ++E F NIP
Sbjct: 19 VNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP-- 76
Query: 342 TWDS--PNVLVIEVRDKD 357
+ L+I V DKD
Sbjct: 77 -LERLRETTLIITVMDKD 93
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 36/136 (26%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPY---------------------------VKGQ 313
+ P+ +V V+EA + D+NG +DPY V
Sbjct: 24 EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83
Query: 314 LGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHFVDDTLGDCTIN 370
P + T+ + +TL+P W+E F + D N L +++ D D DD LG I
Sbjct: 84 TVPAKSIKVTEVKPQTLNPVWNETFRFEVE--DVSNDQLHLDIWDHD---DDFLGCVNIP 138
Query: 371 ISDLRDGQRHDMWIPL 386
+ DL D W L
Sbjct: 139 LKDLP-SCGLDSWFKL 153
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 345
Y V VV+A + DP V+ +LG Y+ TK +T +P+W++ F + D
Sbjct: 1 YLYVRVVKARGLPA----NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAF---SKDR 53
Query: 346 P--NVLVIEVRDKDHFVDDTLGDCTINISD--LRD 376
+ L + V DKD DD LG ++S+ R
Sbjct: 54 LQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRV 88
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 319 FRTKTQRKTLSPKWHEE--FNIPISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLR 375
FRTKT K+L P + E+ F IP + L + D+D D+ +G I DL
Sbjct: 36 FRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVLRRDSVIGKVAIKKEDLH 91
Query: 376 DGQRHDMWIPLQNIKI-----GRLHLAI 398
D W PLQ + G++HL +
Sbjct: 92 KYYGKDTWFPLQPVDADSEVQGKVHLEL 119
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLS------PKWHEE--FNIPI 340
V ++ A ++ +D G DPYV Q RT+ ++ ++ P+W+E+ F +
Sbjct: 5 VLLISAKGLQDTDFLGKIDPYVIIQ-----CRTQERKSKVAKGDGRNPEWNEKFKFTVEY 59
Query: 341 STWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 374
W L++ + DKD+F DD +G+ TI++ L
Sbjct: 60 PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFR-----TKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L R T +++TL+P ++E F+ +
Sbjct: 19 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE 78
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH--DM 382
V L++ V D D +D +G + + RH DM
Sbjct: 79 QIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDM 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-05
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 20/119 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF----RTKTQRKTLSPKWHE--EFNIPIS 341
V V+E D+ NG DP+ + L RTK ++KT +P++ E F + I
Sbjct: 2 SVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60
Query: 342 T---------WD---SPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQ 387
+ + L +E+ D LG+ I + L+ H W LQ
Sbjct: 61 FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 15/114 (13%)
Query: 297 MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356
++ D G D Y + GP RT+T + +P+W+E++ P+ +D VL + V D
Sbjct: 15 LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV--YDPCTVLTVGVFDN 72
Query: 357 DHFVDDT-------LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLA 397
+G I +S L D + + PL ++ K+G L A
Sbjct: 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V + ++ P D + + DPYV+ L P R +T ++ L+P + E F P+S
Sbjct: 20 VTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79
Query: 344 DSPN-VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L + V++ F+ LG I++SDL + W L
Sbjct: 80 ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 307 DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDDTLG 365
DP+V G FRT +R TL+P ++E + + + +V DKD F +D +
Sbjct: 27 DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86
Query: 366 DCTINISDLRDGQRHD 381
++++ +L +
Sbjct: 87 TGSLSVQELLNAAPQP 102
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 288 RVEVVEASDMKPSDL-NGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++E D+ D +G +DPYVK QL P ++ +T+ RKT +P + E F +
Sbjct: 19 LVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPY 78
Query: 344 DSPNVLVIEVRDKDHFV---------DDTLGDCTINISDL 374
+ L + HF DD +G+ ++
Sbjct: 79 NQLQDLSL------HFAVLSFDRYSRDDVIGEVVCPLAGA 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 288 RVEVVEASDMKPSD-LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE---FNIPISTW 343
+V VV A D+ D + L D +V+ + G ++T +K+L+P W+ E F +
Sbjct: 2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEEL 61
Query: 344 DSPNVLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDM--WIPL 386
L I V D D + +D +G I+++ L + W P+
Sbjct: 62 QD-EPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
RV V+EA + G DP VK ++G + T ++ T P ++E F +SP+
Sbjct: 7 RVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFH--ESPD 60
Query: 348 VL-----VIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDM---WIPLQNI 389
L I V D DTL G +++ + D H W+ L +
Sbjct: 61 ELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL---GPY--RFRTKTQRKTLSPKWHEE--FNIPIS 341
+ +++A ++K D+ G +DPYVK L G + +T ++ TL+P ++E F++P
Sbjct: 18 LTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 383
D+ + L+I V D D ++ +G C + DGQ + W
Sbjct: 78 NVDNVS-LIIAVVDYDRVGHNELIGVC--RVGPNADGQGREHW 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 4e-04
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 307 DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV--LVIEVRDKDHFVDDTL 364
PYV+ +G ++K + +T +P W E F + +P L IEV+D +L
Sbjct: 22 SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVR---NPENQELEIEVKDDKT--GKSL 76
Query: 365 GDCTINISDL 374
G T+ +S+L
Sbjct: 77 GSLTLPLSEL 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQL-GPY------RFRTKTQRKTLSPKWHEEFNIPIS 341
V+VV A+D+K G+ P+V+ L GP+ +F TK++ SPK++E F +
Sbjct: 4 VKVVAANDLK-WQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62
Query: 342 TWDSPNVLVIEVRDKDH-FV--DDTLGDCTINISDLRDGQRHDMWIPL 386
D P + + KD+ F D +G + + D+ W+PL
Sbjct: 63 NEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.004
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 306 ADPYVKGQLGPYRF-RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364
+DPYV + RT+ + + P W E+FNI I+ L +V+D D F +
Sbjct: 77 SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIA--HPFAYLEFQVKDDDVFGAQII 134
Query: 365 GDCTINISDLRDGQRHDMWIPL 386
G I + D+ G+R W P+
Sbjct: 135 GTAKIPVRDIASGERISGWFPV 156
|
Length = 868 |
| >gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 18/95 (18%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVK----GQLGPYRFRTKTQRKTLSPKWHEEFNI---PI 340
++ V A +K + + DPYV+ GQ +T+ +KT +PKW+E F + P
Sbjct: 5 QITVESAK-LKSNSKSFKPDPYVEVTVDGQ---PPKKTEVSKKTSNPKWNEHFTVLVTPQ 60
Query: 341 STWDSPNVLVIEVRDKDHFVDDTL-GDCTINISDL 374
ST L +V D L G+ ++++SD+
Sbjct: 61 ST------LEFKVWSHHTLKADVLLGEASLDLSDI 89
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.86 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.82 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.81 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.81 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.81 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.81 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.8 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.8 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.8 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.8 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.79 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.79 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.79 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.79 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.79 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.79 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.78 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.78 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.77 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.77 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.77 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.77 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.77 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.76 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.76 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.76 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.76 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.76 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.76 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.75 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.75 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.73 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.73 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.73 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.72 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.72 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.72 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.72 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.72 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.71 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.71 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.71 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.7 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.69 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.69 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.69 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.69 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.68 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.68 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.68 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.68 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.67 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.67 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.66 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.66 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.66 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.66 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.65 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.65 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.65 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.64 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.63 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.63 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.63 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.63 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.62 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.62 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.62 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.61 | |
| PLN03008 | 868 | Phospholipase D delta | 99.6 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.59 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.59 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.58 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.58 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.56 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.56 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.55 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.55 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.51 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.49 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.49 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.46 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.37 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.32 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.28 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.27 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.23 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.22 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.19 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.11 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.1 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.07 | |
| PLN02270 | 808 | phospholipase D alpha | 99.05 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.03 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.94 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.93 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 98.91 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.82 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 98.79 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.79 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.76 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.75 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.73 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 98.72 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 98.69 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 98.68 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.66 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 98.65 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.63 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.53 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 98.52 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.52 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 98.36 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.36 | |
| PF10296 | 91 | DUF2404: Putative integral membrane protein conser | 98.33 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.32 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 98.29 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.27 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 98.14 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 97.88 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 97.86 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 97.84 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 97.84 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 97.83 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 97.75 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.66 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.62 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 97.58 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.37 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.36 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.35 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 97.34 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 97.26 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.14 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 97.12 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 97.11 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 97.1 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 97.06 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.05 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 97.02 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 97.0 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 96.88 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 96.79 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.58 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 96.55 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 96.38 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 96.35 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 96.23 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 95.95 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 95.68 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 95.54 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 95.48 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 95.46 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.46 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 95.32 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 94.97 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.82 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.12 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 94.09 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 94.0 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 93.52 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 93.28 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 93.26 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 93.21 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 93.14 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 92.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 92.52 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.42 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 92.25 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 91.99 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 91.82 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 91.7 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 91.69 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 91.69 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 91.48 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 91.41 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 91.16 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 91.05 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 90.71 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 90.52 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 90.3 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 90.21 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 89.97 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 89.95 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 89.77 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 89.65 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 89.62 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 89.49 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 89.41 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 89.31 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 89.23 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.11 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 88.95 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 88.84 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 88.52 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 88.46 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 88.38 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 88.13 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 87.82 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 87.82 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 86.6 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 86.26 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 86.12 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 84.69 | |
| KOG3532 | 1051 | consensus Predicted protein kinase [General functi | 84.42 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 83.88 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 83.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 83.67 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 82.81 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 82.79 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 82.75 | |
| PLN03008 | 868 | Phospholipase D delta | 82.31 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 82.08 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 81.65 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 81.4 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 81.39 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 81.16 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 81.15 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 81.07 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 80.41 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-58 Score=538.30 Aligned_cols=382 Identities=25% Similarity=0.505 Sum_probs=330.1
Q ss_pred hHHHHHHHHH---HHHHHHHHhcchhHHHHHHHHhhheeeehhhHHHHHHHHHHHHHHhhhhcccCCCccchHHHHHHHH
Q 004056 7 SIMHHVGIVL---FLLWLLSYFDRCHPAAYFISLIYLYSVHDRYVMRLRRKVEFEERKNSFQRRVLKDSETVRWLNHAIE 83 (776)
Q Consensus 7 ~~~~~~~~vl---~~~wllg~~g~s~~~llli~~~~l~~~~~r~~~rlr~~i~~e~~r~~~~~~~~~d~EsveWLN~iL~ 83 (776)
.|||.+++++ +++|++||++|+++.+||+++..++ +++++..|+|+.++....+++.++++..|+|+|||||+||+
T Consensus 153 ~w~qs~~i~l~~~v~Swifg~~~fs~~slffii~~~~~-vY~~~~~rv~rnird~v~~~~~~ek~~nd~ESveWLNtfL~ 231 (1227)
T COG5038 153 DWYQSVAIVLIGSVASWIFGYLGFSFASLFFIILVTMY-VYRTCIKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFLQ 231 (1227)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 6999888886 6889999999999988888876544 36788889999999998888888999999999999999999
Q ss_pred HhCcccchHHHHHHhhccchHHHHhhcCCcccceeeeeeeecCCCCCEEeeEEEEecCCCCCeEEEEEEEEEeeCCCcch
Q 004056 84 KMWPICMEQIASQKLLLPIIPWFLEKYKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFLTADDMSA 163 (776)
Q Consensus 84 ~~Wp~~~e~~~s~~I~~~~l~~~l~~~kP~~i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vilDldis~~~~~D~si 163 (776)
++||++ |+.+|++|...+.+ .|...-|+||..++|.+||||++||||.+||.|+ +++.|.+.|||+++|++ .|++.
T Consensus 232 KfW~i~-eP~iSqqV~dqvn~-~la~~iPsFI~~l~l~efTLGsk~PrI~~Irsyp-~te~dtv~mD~~~sftP-~d~sD 307 (1227)
T COG5038 232 KFWPII-EPSISQQVVDQVNQ-QLAEAIPSFIDALALDEFTLGSKPPRIDGIRSYP-STESDTVVMDVDFSFTP-HDISD 307 (1227)
T ss_pred hheecc-ChHHHHHHHHHHHH-HHHhhcchhhhhhhhhhcccCCCCCceeeeeecC-CCCCceEEEEeeeccCc-cchhh
Confidence 999998 56678888754444 5555889999999999999999999999999996 78999999999999975 55555
Q ss_pred heehhhhhh----------cC--cc-eeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceEEEEEeecc--cc
Q 004056 164 ILAVKLRKR----------LG--FG-MWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIF--TH 228 (776)
Q Consensus 164 ~l~v~l~~r----------lG--~G-~~~~i~V~~l~~~G~lRV~L~L~~~~P~vg~v~vsFle~P~idf~lkpl~--~~ 228 (776)
+.+-+.+++ +| +| +++||.|+++.|.|++||++.|++.+||++.|++|||+.|+|||.++|++ .+
T Consensus 308 ~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~~ 387 (1227)
T COG5038 308 VTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDFF 387 (1227)
T ss_pred hhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCcc
Confidence 554444443 23 45 67899999999999999999999999999999999999999999999996 35
Q ss_pred CCccccCcchHHHHHHHHHHHhhhcccCCceeeecccccCCCCCCceeeeeecCceeEEEEEEEEecCCCCCC--CCCCC
Q 004056 229 GLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD--LNGLA 306 (776)
Q Consensus 229 G~dV~~iPgLs~~I~~~I~~~l~~~LV~Pn~l~Idl~~~~s~~~~~~fsL~y~~~~GvL~V~VieA~~L~~~D--~~G~s 306 (776)
|+||+.||||++||+++|..++++|+++|+++++|+++++++.. ..+.|+|.|+|.+|++|...+ .++..
T Consensus 388 g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~s--------~~aIGVv~vkI~sa~~lk~~d~~i~~~v 459 (1227)
T COG5038 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDS--------GTAIGVVEVKIKSAEGLKKSDSTINGTV 459 (1227)
T ss_pred ceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcccc--------CCeeEEEEEEEeeccCcccccccccCCC
Confidence 89999999999999999999999999999999999999997732 468999999999999999988 68999
Q ss_pred CcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc-cee
Q 004056 307 DPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH-DMW 383 (776)
Q Consensus 307 DPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~-~~W 383 (776)
|||+.+.... ...+|++.++++||+|||+|++.+... .+.|.++|||++.++ |+.+|++.++|..|.....+ +.-
T Consensus 460 Dpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~--~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~ 537 (1227)
T COG5038 460 DPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF--TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNEL 537 (1227)
T ss_pred CceEEEEeccccCCccceeeccCCccccceEEEEeccc--CCceeEEEEeccccCCcceeeeEEechHHhhhccccccce
Confidence 9999999765 466999999999999999999999874 478999999988886 99999999999998876543 222
Q ss_pred ee-cCC-CCceEEEEEEEEEec
Q 004056 384 IP-LQN-IKIGRLHLAITVLEE 403 (776)
Q Consensus 384 ~~-L~~-~~~GeI~LsL~~~~~ 403 (776)
+. +.+ ...|+|++.+.|.|.
T Consensus 538 ~e~~~~~k~vGrL~yDl~ffp~ 559 (1227)
T COG5038 538 YEFLRNTKNVGRLTYDLRFFPV 559 (1227)
T ss_pred eeeeccCccceEEEEeeeeecc
Confidence 22 222 457999999988875
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=298.01 Aligned_cols=233 Identities=24% Similarity=0.350 Sum_probs=202.1
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...|++.|+.....|.|+|++|++|+.+|..|.+||||++++.| .+++|++.++|+||.|||+|.|.|...+ ..+
T Consensus 154 G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~ 233 (421)
T KOG1028|consen 154 GNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNR 233 (421)
T ss_pred eeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccC
Confidence 346799999999999999999999999999888999999999988 5789999999999999999999977432 457
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEecCCC--------------
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAK-------------- 406 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~~~~k-------------- 406 (776)
+|.+.|||+|+|+ |++||++.++|..+........|.+|... ..|+|+++++|++...+
T Consensus 234 ~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~ 313 (421)
T KOG1028|consen 234 VLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSM 313 (421)
T ss_pred EEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcc
Confidence 8999999999997 99999999999999888778899999752 24799999999997322
Q ss_pred ---ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec--Ceeee-eE-EEe
Q 004056 407 ---GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GI-WVH 479 (776)
Q Consensus 407 ---~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~-gv-~~~ 479 (776)
...|||||+++ ...+++++||||.+++++.||+||+.+.|++|.+++..++..+++++++ |.++. |. +++
T Consensus 314 ~~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 314 DVGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILG 390 (421)
T ss_pred cCCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEec
Confidence 24689999999 5667999999999999999999999999999999999999999999999 44433 53 344
Q ss_pred cC-CcccccccccccCCCCCccceEeecC
Q 004056 480 QP-GSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 480 ~p-g~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
.- ++...+||.+|+.+||+|.++||...
T Consensus 391 ~~~~~~~~~hW~~m~~~p~~pv~~wh~l~ 419 (421)
T KOG1028|consen 391 SDSTGEEVRHWQEMLNSPRKPVAQWHSLR 419 (421)
T ss_pred CCCCchHHHHHHHHHhCccCceeeeEecc
Confidence 33 34446999999999999999999764
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-21 Score=180.66 Aligned_cols=113 Identities=23% Similarity=0.392 Sum_probs=101.6
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|+|++|++|+..+ .|++||||++.++.++++|+++.+ ++||+|||+|.|.+... ...|.|+|||+|.++ |+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~--~~~l~~~V~d~d~~~~dd 78 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG--VDSIYIEIFDERAFTMDE 78 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC--CcEEEEEEEeCCCCcCCc
Confidence 79999999999998877 789999999999999999999876 89999999999999752 367999999999997 89
Q ss_pred ceeEEEEecC-cccCCCccceeeecCC----CCceEEEEEEEE
Q 004056 363 TLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV 400 (776)
Q Consensus 363 ~LG~v~I~L~-~L~~~~~~~~W~~L~~----~~~GeI~LsL~~ 400 (776)
+||++.++|. .+..++..+.|++|.+ .+.|+|||+|+|
T Consensus 79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence 9999999996 5777777899999986 457999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-21 Score=179.74 Aligned_cols=111 Identities=21% Similarity=0.386 Sum_probs=98.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
..+|+|.|++..+.|+|+|++|++|+ . .|.+||||+++|.+ .+++|+++++|+||+|||+|.|.++..+ ...
T Consensus 2 ~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 2 KLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred eEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 35799999999999999999999998 3 46799999999975 5789999999999999999999998644 345
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
+|.|+|||+|+++ +++||++.++|+++..+...+.|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 8999999999997 99999999999998777777889765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=174.28 Aligned_cols=113 Identities=28% Similarity=0.501 Sum_probs=100.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC----CCCCEEEEEEeecCCCC-C
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~----e~~~~L~V~VyD~D~~~-D 361 (776)
++|+|++|+||+.++.+|.+||||++++++++++|+++++++||+|||+|.|.+... .....|.|.|||++.++ |
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 579999999999999999999999999999999999999999999999999998752 13468999999999987 9
Q ss_pred CceeEEEEecCccc--CCCccceeeecCCC------CceEEEEEEE
Q 004056 362 DTLGDCTINISDLR--DGQRHDMWIPLQNI------KIGRLHLAIT 399 (776)
Q Consensus 362 d~LG~v~I~L~~L~--~~~~~~~W~~L~~~------~~GeI~LsL~ 399 (776)
++||++.++|.++. .+.....|++|.+. ..|+|+|+++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 99999999999987 55667899999752 3699999874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=167.00 Aligned_cols=114 Identities=37% Similarity=0.612 Sum_probs=104.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
+|+|+|++|++|+.++..|.+||||+++++.++++|+++++|+||.|||+|.|.+... ..+.|.|+|||++.++ |++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i 79 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI 79 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence 4789999999999999889999999999999999999999999999999999998753 3578999999999986 9999
Q ss_pred eEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
|++.++|+++..+..++.|++|++. .|+|++.++|.
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~ 115 (116)
T cd08376 80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT 115 (116)
T ss_pred EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence 9999999999988889999999974 69999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-20 Score=171.84 Aligned_cols=113 Identities=30% Similarity=0.379 Sum_probs=99.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEee-ccCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STWD- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V-~~~e- 344 (776)
+..+|++.|. .+.|.|+|++|+||++++ +|.+||||++++.+ .+++|+++++++||.|||+|.|.+ +..+
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 4567899998 799999999999999999 89999999999974 478999999999999999999987 3211
Q ss_pred CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
....|.|+|||+|.++ +++||++.++|.++..++....|++|.
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 122 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG 122 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence 3468999999999987 999999999999999888889999873
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.6e-20 Score=172.62 Aligned_cols=115 Identities=25% Similarity=0.448 Sum_probs=102.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
..+|++.|....+.|.|+|++|+||+++|.. |.+||||++++.+ .++||+++++++||+|||+|.|.+...+ .
T Consensus 3 ~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~ 82 (125)
T cd08393 3 SVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELP 82 (125)
T ss_pred EEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhC
Confidence 4578999999999999999999999999975 8999999999964 4579999999999999999999987432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|+|||++.++ +++||++.++|.++...+....|++|+
T Consensus 83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 358999999999986 899999999999998888889999985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=167.02 Aligned_cols=115 Identities=29% Similarity=0.506 Sum_probs=104.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
.|+|+|++|++|+..|..|.+||||++++++ ..++|+++++++||.|||+|.|.+... .+.|.|+|||++..+ |++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~D~d~~~~~~~ 78 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV--TQPLYIKVFDYDRGLTDDF 78 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC--CCeEEEEEEeCCCCCCCcc
Confidence 3899999999999999999999999999987 688999999999999999999998753 468999999999985 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC----CceEEEEEEEEEe
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE 402 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~~~~ 402 (776)
||++.++|+++..+...+.|++|.+. ..|+|+|.++|.|
T Consensus 79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence 99999999999988889999999753 3799999998864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=167.23 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=103.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
|.|+|+|++|++|+..+..|.+||||++++++++++|+++.+ ++||.|||+|.|.+... ..+.|.|+|||++..+|++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED-KKPILKVAVFDDDKRKPDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCCcc
Confidence 689999999999999999999999999999999999999754 79999999999999853 3468999999999878999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC--CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~--~~GeI~LsL~~ 400 (776)
||++.+++.++..+.....|++|... ..|+|+|+++|
T Consensus 80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence 99999999998877778999999753 47999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=170.18 Aligned_cols=116 Identities=25% Similarity=0.360 Sum_probs=102.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e- 344 (776)
+..++++.|....+.|.|+|++|+||++++. .|.+||||++++.+ .++||+++++++||+|||+|.|.+...+
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l 81 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL 81 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence 4567899999999999999999999999875 58999999999964 3679999999999999999999987432
Q ss_pred CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
....|.|.|||++.++ +++||++.++|.++...+..+.|++|.
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 2457999999999987 999999999999999988899999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-19 Score=165.63 Aligned_cols=115 Identities=34% Similarity=0.613 Sum_probs=104.7
Q ss_pred eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC
Q 004056 285 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~------~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~ 358 (776)
|+|+|+|++|++|+.+|. .|.+||||+++++++.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence 679999999999999874 37899999999999999999999999999999999998753 35789999999998
Q ss_pred CCCCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEE
Q 004056 359 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 359 ~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
.++++||++.++|.++..+...+.|++|++...|+|+++++|
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~ 121 (121)
T cd08391 80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW 121 (121)
T ss_pred CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence 889999999999999988877899999998789999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-19 Score=169.82 Aligned_cols=119 Identities=29% Similarity=0.513 Sum_probs=106.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
....|.|+|+|++|++|++.|..|.+||||+++++.+.++|+++++++||.|||+|.|.+... ..+.|.|+|||++.++
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~~ 89 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFFS 89 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCCC
Confidence 457899999999999999999999999999999999999999999999999999999999753 3468999999999886
Q ss_pred -CCceeEEEEecCcccC-----CCccceeeecCCCCceEEEEEEEE
Q 004056 361 -DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~-----~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
|++||++.++|.++.. ......|+.|.....|+|+|++++
T Consensus 90 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~ 135 (136)
T cd08375 90 PDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL 135 (136)
T ss_pred CCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence 9999999999999886 234467888888889999999976
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-19 Score=169.24 Aligned_cols=109 Identities=28% Similarity=0.455 Sum_probs=98.4
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC---
Q 004056 286 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (776)
Q Consensus 286 vL~V~VieA~~---L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~--- 359 (776)
.|.|+|++|+| |+.+|..|.+||||+++++++++||+++++++||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~--~~~l~v~V~d~d~~~~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP--CTVLTVGVFDNSQSHWK 78 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC--CCEEEEEEEECCCcccc
Confidence 38999999999 89999999999999999999999999999999999999999999753 35899999999986
Q ss_pred ----CCCceeEEEEecCcccCCCccceeeecCC------CCceEEEE
Q 004056 360 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL 396 (776)
Q Consensus 360 ----~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~------~~~GeI~L 396 (776)
+|++||++.++|..+..+.....|++|.. .+.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 69999999999999999888899999984 24677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=167.27 Aligned_cols=117 Identities=26% Similarity=0.522 Sum_probs=104.8
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...+++.|+++.|.|.|+|++|+||++++..|.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ...
T Consensus 3 G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~ 82 (124)
T cd08387 3 GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKR 82 (124)
T ss_pred CEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCC
Confidence 345789999999999999999999999999999999999999954 5789999999999999999999987432 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++.++ +++||++.++|+++..++..+.|++|+.
T Consensus 83 ~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~~ 124 (124)
T cd08387 83 TLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124 (124)
T ss_pred EEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECcC
Confidence 8999999999986 9999999999999998888999999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=165.21 Aligned_cols=114 Identities=29% Similarity=0.431 Sum_probs=103.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
|.|+|++|++|++.+..|.+||||++++++ .+++|+++++++||+|||+|.|.+... ..+.|.|+|||+|..+|++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence 789999999999999889999999999963 678999999999999999999998753 3467999999999888999
Q ss_pred eeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
||++.++|.++..+.....|++|.+...|+|++++.+.
T Consensus 81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~ 118 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE 118 (119)
T ss_pred cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence 99999999999999899999999988899999988653
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-19 Score=168.16 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=101.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
+..+|++.|+...+.|.|+|++|+||++++.. |.+||||++++.+ .++||+++++++||+|||+|.|.+...+.
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l 81 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL 81 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence 34679999999999999999999999999875 9999999999975 37799999999999999999999875332
Q ss_pred -CCEEEEEEeecCCCC-CCceeEEEEecCcccCC---CccceeeecC
Q 004056 346 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ 387 (776)
Q Consensus 346 -~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~---~~~~~W~~L~ 387 (776)
...|.|.|||++.++ +++||++.|+|+++... .....||+|.
T Consensus 82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 358999999999886 99999999999998764 3568999884
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.1e-19 Score=165.87 Aligned_cols=116 Identities=27% Similarity=0.345 Sum_probs=102.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeecCCC--CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD 361 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~~--~D 361 (776)
.|+|+|++|++|++.+..|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||.+.+ ++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 38999999999999998899999999999999999999999999999999999987432 135799999999987 59
Q ss_pred CceeEEEEecCccc-CCCccceeeecCCC-----CceEEEEEEEEE
Q 004056 362 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 362 d~LG~v~I~L~~L~-~~~~~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
++||++.++|.++. .+.....|++|+.. .+|+|+|++.+.
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 99999999999987 45677899999853 489999998764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-19 Score=170.36 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=85.5
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCcceeeEEEeeccCCCCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTl-NP~WnEtF~f~V~~~e~~~ 347 (776)
..|+|.|.+..|.|+|+|++|+||++++..+.+||||++++.. .+.||+++++|+ ||+|||+|.|.++..+..-
T Consensus 3 l~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v 82 (135)
T cd08692 3 LQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGI 82 (135)
T ss_pred EEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhee
Confidence 4689999999999999999999999986667789999999843 578999999996 6999999999998654445
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINIS 372 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~ 372 (776)
.|.|+|||++..+ +++||++.++.+
T Consensus 83 ~l~v~v~d~~~~~~n~~IG~v~lG~~ 108 (135)
T cd08692 83 QFLIKLYSRSSVRRKHFLGQVWISSD 108 (135)
T ss_pred EEEEEEEeCCCCcCCceEEEEEECCc
Confidence 7999999999876 999999888654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-19 Score=165.39 Aligned_cols=115 Identities=31% Similarity=0.518 Sum_probs=103.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCCE
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNV 348 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~ 348 (776)
..++++.|....+.|.|+|++|+||++++..|.+||||++++.+ ..++|+++++++||.|||+|.|.+...+ ....
T Consensus 4 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~ 83 (124)
T cd08385 4 KLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKT 83 (124)
T ss_pred EEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCE
Confidence 45788999999999999999999999999999999999999965 5789999999999999999999987422 2358
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
|.|+|||++.++ +++||++.++|+++..+...+.|++|+
T Consensus 84 l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 84 LVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999999999986 899999999999998888889999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=163.81 Aligned_cols=115 Identities=35% Similarity=0.583 Sum_probs=102.7
Q ss_pred eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 285 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~--~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
|+|+|+|++|++|+..+. .+.+||||+++++.++++|+++++++||.|||+|.|.+... ..+.|.|+|||++..+ +
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~-~~~~l~i~v~d~~~~~~~ 79 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA-QNQLLKLILWDKDRFAGK 79 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC-CCCEEEEEEEECCCCCCC
Confidence 689999999999999998 89999999999999999999999999999999999999852 3578999999999985 9
Q ss_pred CceeEEEEecCcccC---CCccceeeecCCC-------CceEEEEEEEE
Q 004056 362 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV 400 (776)
Q Consensus 362 d~LG~v~I~L~~L~~---~~~~~~W~~L~~~-------~~GeI~LsL~~ 400 (776)
++||++.++|.++.. ......|+.|.+. ..|+|+|+++|
T Consensus 80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 999999999999873 3446899999864 48999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-19 Score=166.69 Aligned_cols=114 Identities=20% Similarity=0.312 Sum_probs=101.2
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+.+|+|.|++..+.|.|+|++|+||++++..|.+||||+++|.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 45789999999999999999999999999889999999999965 3789999999999999999999987543 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCC-ccceeeec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~-~~~~W~~L 386 (776)
...|.|+|||++.++ +++||++.|+|+++.... ....||.|
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 468999999999886 999999999999997654 57889876
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=163.30 Aligned_cols=112 Identities=30% Similarity=0.513 Sum_probs=99.3
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|+||++++ .+|.+||||+++++.+ .++|+++++|+||.|||+|.|.+.. ....|.|.|||++.++ |++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~ 79 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV 79 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence 689999999999974 4688999999999774 6899999999999999999999985 2468999999999986 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
||++.++|+++..+...+.|++|+.. ..|+|||++++
T Consensus 80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 99999999999988888999999853 27999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=169.14 Aligned_cols=114 Identities=25% Similarity=0.245 Sum_probs=100.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
++..|++.|. .+.|.|+|++|+||++++ ..|.+||||++++.+ .+.||+++++|+||+|||+|.|.+.. .
T Consensus 18 G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--~ 93 (146)
T cd04028 18 GDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--T 93 (146)
T ss_pred ceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--C
Confidence 5678999984 689999999999999874 678999999999965 37899999999999999999999982 4
Q ss_pred CCEEEEEEe-ecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 346 PNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 ~~~L~V~Vy-D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
...|.|+|| |++.++ +++||++.|+|+++..+.....|++|.+.
T Consensus 94 ~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 94 GKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 678999999 677775 99999999999999888888999999863
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=165.36 Aligned_cols=117 Identities=26% Similarity=0.315 Sum_probs=100.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEe-eccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~ 345 (776)
++.+|++.|....+.|.|+|++|+||+.++.. |.+||||++++.+ +++||+++++++||+|||+|.|. +...+ .
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~ 82 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ 82 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence 35679999999999999999999999999876 8999999999964 57799999999999999999994 44222 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCC--CccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~--~~~~~W~~L~~ 388 (776)
...|.|+|||+|.++ |++||++.++|+++... +....|++|++
T Consensus 83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 347999999999886 99999999999999765 56789998863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=168.23 Aligned_cols=117 Identities=30% Similarity=0.501 Sum_probs=102.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
.|+|+|++|++|+++|.+|.+||||+++++++.++|+++.+ |+||+|||+|.|.+... ....|.|+|||++..+ |++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~-~~~~l~v~V~d~~~~~~dd~ 79 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEP-FEDHLILSVEDRVGPNKDEP 79 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCc-cCCeEEEEEEEecCCCCCCe
Confidence 38999999999999999999999999999999999999877 69999999999998753 3468999999999875 999
Q ss_pred eeEEEEecCcccCC----CccceeeecCCCC-----------ceEEEEEEEEEec
Q 004056 364 LGDCTINISDLRDG----QRHDMWIPLQNIK-----------IGRLHLAITVLEE 403 (776)
Q Consensus 364 LG~v~I~L~~L~~~----~~~~~W~~L~~~~-----------~GeI~LsL~~~~~ 403 (776)
||++.++|+++..+ ...+.|++|.+.. .|+|+|++++.+.
T Consensus 80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 99999999998653 4468999998632 4999999998754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=163.88 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=103.2
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEe-eccCC-CC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~~ 346 (776)
++.+|++.|+...+.|.|+|++|+||++++.+|.+||||++.+.+ ++++|+++++ +||+|||+|.|. +...+ ..
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence 346799999999999999999999999999999999999998865 6789999888 999999999998 55322 34
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++.++ +++||++.++|+++..+.....|++|++
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 68999999999987 9999999999999998888999999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=162.57 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=103.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+..+++|.|+...+.|+|+|++|+||+.++..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 3 G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~ 82 (127)
T cd04030 3 GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELK 82 (127)
T ss_pred eEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhc
Confidence 456899999999999999999999999999989999999999963 6789999999999999999999986432 2
Q ss_pred CCEEEEEEeecCCC---CCCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHF---VDDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~---~Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|.|||.+.+ .+++||++.++|.++..+.....|++|.
T Consensus 83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 36899999999985 4999999999999998888889999984
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=160.21 Aligned_cols=116 Identities=27% Similarity=0.511 Sum_probs=102.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC--CCC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~ 347 (776)
...|++.|..+.+.|.|+|++|+||+.++..+.+||||++++.+ +.++|+++++++||.|||+|.|.+...+ ...
T Consensus 4 ~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 4 RIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 45789999999999999999999999999999999999999943 6789999999999999999999753221 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++.++ +++||++.++|+++..+.....|+.|++
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 7999999999886 9999999999999998888999999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=166.07 Aligned_cols=116 Identities=22% Similarity=0.371 Sum_probs=102.4
Q ss_pred eeEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcc
Q 004056 284 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKW 332 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D------------------------------~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~W 332 (776)
.|+|.|+|++|++|+++| ..|++||||++++++. ..+|+++++++||.|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 589999999999999988 3567899999999874 579999999999999
Q ss_pred eeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEE
Q 004056 333 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVL 401 (776)
Q Consensus 333 nEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~ 401 (776)
||+|.|.+.. ..+.|.|.|||.|.+++++||++.++|+++..+...+.|++|.+. ..|+|++++.|.
T Consensus 86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 9999999865 346899999999998899999999999999988888999999652 258999999873
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=162.59 Aligned_cols=110 Identities=23% Similarity=0.383 Sum_probs=95.6
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCE
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~ 348 (776)
..++++| ..+.|.|+|++|+||++++ .|.+||||++++.+ .++||+++++++||.|||+|.|.+...+....
T Consensus 3 l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~ 79 (119)
T cd08685 3 LKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKR 79 (119)
T ss_pred EEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCE
Confidence 3455665 5789999999999999999 88999999999976 36799999999999999999999875444457
Q ss_pred EEEEEeecCCCC--CCceeEEEEecCcccCCCccceeeec
Q 004056 349 LVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 349 L~V~VyD~D~~~--Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
|.|+|||++... +++||++.|+|.++..+...+.||.|
T Consensus 80 l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 80 LLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred EEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 999999999874 78999999999999887778999976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=160.95 Aligned_cols=102 Identities=29% Similarity=0.486 Sum_probs=89.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C---C---eEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeec
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL-G---P---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK 356 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L-g---~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~ 356 (776)
.|+|+|++|++|+..+ .|.+||||++++ + + ++++|+++++|+||+|||+|.|.+...+ ....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999988 499999999998 3 1 4679999999999999999999998532 235799999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|..+ +++||++.++|.++..++..+.|++|+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 9876 9999999999999999998999999975
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=160.31 Aligned_cols=114 Identities=32% Similarity=0.455 Sum_probs=98.4
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
..++++.|+...+.|.|+|++|+||+.++.++.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 4 ~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 83 (125)
T cd04031 4 RIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLK 83 (125)
T ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhC
Confidence 35688999999999999999999999999889999999999975 5789999999999999999999864321 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|+|||++..+ +++||++.++|.+.. ......||+|+
T Consensus 84 ~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~ 125 (125)
T cd04031 84 ERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence 468999999999987 999999999999833 33457899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-18 Score=159.49 Aligned_cols=114 Identities=24% Similarity=0.369 Sum_probs=101.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
..+|++.|+...+.|.|+|++|+||+.++ ..+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+ .
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~ 81 (123)
T cd08521 2 EIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLE 81 (123)
T ss_pred eEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhC
Confidence 35789999999999999999999999998 788999999999854 4689999999999999999999987432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
...|.|+|||++.++ +++||++.++|+++..+...+.||+|
T Consensus 82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 82 TRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 458999999999886 89999999999999888888999987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-18 Score=159.08 Aligned_cols=113 Identities=23% Similarity=0.406 Sum_probs=101.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~--~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|+||+. ..|.+||||+++++. ++++|+++++|+||.|||+|.|.+.. ..+.|.|+|||++..+ |++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~ 76 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF 76 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence 6799999999988 678999999999974 67899999999999999999999864 3468999999999987 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEec
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE 403 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~~ 403 (776)
||++.++|.++..+.....|++|.+. ..|+|++++.|.+.
T Consensus 77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 99999999999988878899999753 48999999999875
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=158.66 Aligned_cols=116 Identities=27% Similarity=0.401 Sum_probs=103.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~~ 347 (776)
..++++.|+...+.|.|+|++|+||+.++ ..+.+||||++++.+ +..+|+++++++||+|||+|.|.+..... ..
T Consensus 2 ~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~ 81 (123)
T cd08390 2 RLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRR 81 (123)
T ss_pred EEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhccc
Confidence 35789999999999999999999999998 688999999999854 56899999999999999999999874322 35
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++..+ +++||++.++|+++.....+..|++|++
T Consensus 82 ~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 82 TLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred EEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 7999999999986 9999999999999999888899999973
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-18 Score=157.46 Aligned_cols=112 Identities=29% Similarity=0.518 Sum_probs=100.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
.|+|+|++|++|+.++.++.+||||+++++.+.++|+++++|+||.|||+|.|.+... ....|.|+|||++..+ +++|
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL 79 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence 3899999999999999889999999999999999999999999999999999999763 2568999999999887 9999
Q ss_pred eEEEEecCcccCCCccceeeecCC---------CCceEEEEEE
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI 398 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~---------~~~GeI~LsL 398 (776)
|++.++|+++..+...+.|+.|.+ ...|.|+|.+
T Consensus 80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 999999999988777899999975 2368888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-17 Score=156.53 Aligned_cols=114 Identities=27% Similarity=0.433 Sum_probs=97.9
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
...|+|+|++|+||+.+ +.+||||+++++. +..+|++. +++||.|||+|.|.+...+ ...|.|.|||.+..+ |
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~-~~~l~v~v~d~~~~~~d 77 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD-VNSFTISLSNKAKRSKD 77 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC-cCEEEEEEEECCCCCCC
Confidence 35699999999999875 4789999999987 45789874 6899999999999865432 257999999999886 9
Q ss_pred CceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEe
Q 004056 362 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~ 402 (776)
++||++.++|+++..+...+.|++|.+. ..|+|+|+++|.+
T Consensus 78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999999999988888999999753 3599999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=157.11 Aligned_cols=110 Identities=31% Similarity=0.479 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCcee
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG 365 (776)
.|.|+|++|+||+.+ .+||||+++++.++.+|+++++++||+|||+|.|.+... ....|.|+|||++..++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence 389999999999987 789999999999999999999999999999999998653 356899999999988899999
Q ss_pred EEEEecCcccCCC-----ccceeeecCCCC----ceEEEEEEEE
Q 004056 366 DCTINISDLRDGQ-----RHDMWIPLQNIK----IGRLHLAITV 400 (776)
Q Consensus 366 ~v~I~L~~L~~~~-----~~~~W~~L~~~~----~GeI~LsL~~ 400 (776)
++.++|+++.... ....|++|.... .|+|+|++.|
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~ 119 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF 119 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence 9999999987532 356899998743 6999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=157.99 Aligned_cols=114 Identities=33% Similarity=0.469 Sum_probs=99.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH 358 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-------~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~ 358 (776)
.|+|+|++|++|+.+|..|.+||||++++.+. .++|+++++|+||.|||+|.|.+... ...|.|+|||++.
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~l~~~v~d~~~ 78 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR--EHRLLFEVFDENR 78 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC--CCEEEEEEEECCC
Confidence 38999999999999998899999999999653 57999999999999999999998752 4679999999999
Q ss_pred CC-CCceeEEEEecCcccCCCc------cceeeecCCC-----CceEEEEEEEEE
Q 004056 359 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 359 ~~-Dd~LG~v~I~L~~L~~~~~------~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
++ +++||++.+++.++..+.. ...|++|++. ..|+|+|++.|+
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 86 9999999999999886543 4689999852 489999999874
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=155.59 Aligned_cols=111 Identities=26% Similarity=0.505 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|.|+|++|++|+++|..|.+||||+++++.. .++|+++++++||.|||.|.|.+.. ..+.|.|.|||++..+ |++|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i 79 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI 79 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence 7899999999999999999999999999874 5799999999999999999999874 2468999999999986 9999
Q ss_pred eEEEEecCcccCC-CccceeeecCCC-----CceEEEEEEE
Q 004056 365 GDCTINISDLRDG-QRHDMWIPLQNI-----KIGRLHLAIT 399 (776)
Q Consensus 365 G~v~I~L~~L~~~-~~~~~W~~L~~~-----~~GeI~LsL~ 399 (776)
|++.+++..+... ...+.|++|++. ..|+|++.++
T Consensus 80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 9999999888754 347899999763 2799998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=152.56 Aligned_cols=112 Identities=30% Similarity=0.569 Sum_probs=99.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|.|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+.. ....|.|+|||++..+ +++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~ 78 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF 78 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence 6899999999999999999999999999999888999999999999999999999864 3578999999999865 999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
||++.++|.++..+ ...|+.|.+. ..|+|+|++.+
T Consensus 79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 99999999998754 3579999752 38999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=153.38 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=100.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd 362 (776)
|..+|+|+|++|++|+..|..|.+||||+++++++.++|+++++++||+|||.|.|.+.. ....|.|+|||++..+|+
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~ 78 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE 78 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence 457899999999999999999999999999999999999999999999999999998875 356899999999988899
Q ss_pred ceeEEEEecCcccCCCccceeeecCC-------CCceEEEEEEEEEe
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLE 402 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~-------~~~GeI~LsL~~~~ 402 (776)
+||++.+++..+.. ....|++|.. ...|+|.+++.+.+
T Consensus 79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99999999987643 3456777742 34899999987764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=153.06 Aligned_cols=117 Identities=24% Similarity=0.378 Sum_probs=100.4
Q ss_pred eeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 284 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~--~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
.|.|+|+|++|++|+..+ ..+.+||||++++++ ..++|+++++++||.|||.|.|.+.. ..+.|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence 478999999999999765 457799999999987 78999999999999999999999873 4578999999999886
Q ss_pred -CCceeEEEEecCcccCCCccc-eeeecC--CCCceEEEEEEEEEe
Q 004056 361 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE 402 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~~~-~W~~L~--~~~~GeI~LsL~~~~ 402 (776)
|++||++.++|.++..+.... .|..|. ++..|+|+++++|.|
T Consensus 79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence 999999999999998876654 344443 345899999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=154.26 Aligned_cols=114 Identities=32% Similarity=0.566 Sum_probs=101.0
Q ss_pred eeEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~----------G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
.|.|+|+|++|++|+..|.. |.+||||+++++++. .+|+++++|+||.|||+|.|.+.. ...|.|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~ 79 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT 79 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence 47899999999999988863 689999999998854 699999999999999999999973 4689999
Q ss_pred EeecCCCC-CCceeEEEEecCcccC--CCccceeeecCCCCceEEEEEEEEEe
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~--~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
|||.+..+ +++||++.++|.++.. +...+.|++|+ ..|+|+++++|..
T Consensus 80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~ 130 (132)
T cd04014 80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKG 130 (132)
T ss_pred EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEec
Confidence 99998876 8999999999999887 56689999998 4799999998864
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=161.99 Aligned_cols=97 Identities=34% Similarity=0.569 Sum_probs=89.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
..|.|+|+|++|.||..+|..+++||||.+.+++++.||+++.+++||+|||.|.|.+.+. ...|.+.|||+|.++ |
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~--~~~lkv~VyD~D~fs~d 81 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP--NTPLKVTVYDKDTFSSD 81 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC--CceEEEEEEeCCCCCcc
Confidence 5799999999999999999889999999999999999999999999999999999999863 468999999999998 9
Q ss_pred CceeEEEEecCcccCCCccc
Q 004056 362 DTLGDCTINISDLRDGQRHD 381 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~ 381 (776)
|+||.++|+|..+...+...
T Consensus 82 D~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 82 DFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred cccceeeeccHHHHHHhhhh
Confidence 99999999999988665443
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-17 Score=161.17 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=97.7
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..+|+|.|.+..+.|.|+|++|+||+.+|..|.+||||++++.+ .+.||+++++++||+|||+|.|.++..+ ..
T Consensus 3 ~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~ 82 (136)
T cd08406 3 EILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQD 82 (136)
T ss_pred EEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCC
Confidence 46799999999999999999999999999999999999999965 2668999999999999999999987533 34
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|.++ +++||++.++... .+...+.|..+..
T Consensus 83 ~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 83 LSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred cEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 57999999999886 9999999997664 4555677876654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.6e-17 Score=153.96 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC--------CCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW--------DSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~--------e~~~~L~V~VyD~D 357 (776)
.|+|+|++|++|+++|..|.+||||+++++.++++|+++++|+||.|||+|.|.+... +....|.|+|||+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d 81 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence 5899999999999999999999999999999999999999999999999999975321 11257999999999
Q ss_pred CCC-CCceeEEEE-ecCcccC---CCccceeeecCC--CCceEEEEEEEEEec
Q 004056 358 HFV-DDTLGDCTI-NISDLRD---GQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (776)
Q Consensus 358 ~~~-Dd~LG~v~I-~L~~L~~---~~~~~~W~~L~~--~~~GeI~LsL~~~~~ 403 (776)
..+ |++||++.+ ++..+.. .....+|++|.. ...|+|++++++.+.
T Consensus 82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV 134 (135)
T ss_pred CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence 987 899999987 4444443 456789999974 348999999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-17 Score=157.41 Aligned_cols=113 Identities=29% Similarity=0.445 Sum_probs=98.4
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
..++|.|....+.|.|+|++|+||+++|..|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ ...
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~ 81 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKK 81 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCC
Confidence 4688999999999999999999999999999999999999964 4689999999999999999999987432 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||+|..+ +++||++.+++.. .+.....|+++..
T Consensus 82 ~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 82 TLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 8999999999886 9999999999985 3455678988754
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=161.43 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=99.4
Q ss_pred ceeeeeecC------------ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeE
Q 004056 274 NWFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEF 336 (776)
Q Consensus 274 ~~fsL~y~~------------~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF 336 (776)
..|++.|.+ +.|.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|+||.|||+|
T Consensus 4 l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f 83 (162)
T cd04020 4 LKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTF 83 (162)
T ss_pred EEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEE
Confidence 457778877 5699999999999999999999999999999843 67899999999999999999
Q ss_pred EEeeccCC--CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 337 NIPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 337 ~f~V~~~e--~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.+...+ ....|.|+|||++.++ +++||++.+++.++......+.|+.|.+
T Consensus 84 ~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 84 VYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 99854221 2347999999999987 9999999999999988777889998864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-17 Score=160.09 Aligned_cols=114 Identities=19% Similarity=0.272 Sum_probs=96.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~--~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e 344 (776)
+...|+|.|.+..+.|.|+|++|+||+++|. .+.+||||++++.+ .+.||+++++++||+|||+|.|.++..+
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~ 81 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSEL 81 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHH
Confidence 3467999999999999999999999999983 35589999999976 3679999999999999999999998533
Q ss_pred C-CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 S-PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~-~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
. ...|.|+|||+|.++ +++||++.+++.. .+...+.|..+.
T Consensus 82 L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml 124 (138)
T cd08407 82 LAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML 124 (138)
T ss_pred hCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence 2 457999999999987 9999999999975 445566776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-17 Score=150.59 Aligned_cols=94 Identities=23% Similarity=0.366 Sum_probs=83.6
Q ss_pred eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 285 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~----G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
|+|.|+|++|++|++.+.. +.+||||+++++.+++||+++++++||+|||+|.|.+...+....|.|+|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 7899999999999998632 358999999999999999999999999999999999875444468999999999987
Q ss_pred -CCceeEEEEecCcccCCC
Q 004056 361 -DDTLGDCTINISDLRDGQ 378 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~ 378 (776)
|++||++.++|++|..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 999999999999988654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=148.73 Aligned_cols=100 Identities=26% Similarity=0.382 Sum_probs=90.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCcee
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 365 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG 365 (776)
.|.|+|++|++|+..+..+.+||||+++++++.++|+++++|+||.|||+|.|.+... ..+.|.|+|||++. +++||
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG 77 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG 77 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence 3899999999999999889999999999999999999999999999999999999864 34689999999987 89999
Q ss_pred EEEEecCcccCCC--ccceeeecCC
Q 004056 366 DCTINISDLRDGQ--RHDMWIPLQN 388 (776)
Q Consensus 366 ~v~I~L~~L~~~~--~~~~W~~L~~ 388 (776)
++.++|.++.... ..+.||+|.+
T Consensus 78 ~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 78 SLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EEEEEHHHhhccccceeeeeEecCC
Confidence 9999999987654 5789999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=149.82 Aligned_cols=114 Identities=28% Similarity=0.495 Sum_probs=99.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
.|+|+|++|++|+..+..|.+||||++++.+ ..++|+++++++||.|||+|.|.+... ....|.|+|||++..+ +
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH 80 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence 5899999999999999999999999999864 468999999999999999999999863 3568999999999885 9
Q ss_pred CceeEEEEecCcccC---CCccceeeecCCCCceEEEEEEEEEe
Q 004056 362 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~---~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
++||++.++|..+.. +...+.|++|.+ .|+|++.+++..
T Consensus 81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~ 122 (126)
T cd04043 81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEG 122 (126)
T ss_pred ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEee
Confidence 999999999997643 346789999985 799999998865
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=158.17 Aligned_cols=101 Identities=30% Similarity=0.360 Sum_probs=87.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeecc------------C-C-CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST------------W-D-SP 346 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~------------~-e-~~ 346 (776)
.|.|+|++|+||+. .+|.+||||++++.+ ++++|+++++|+||+|||+|.|.+.. . + ..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 578999999999976 67899999999999999999999841 1 1 12
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCC-CccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~-~~~~~W~~L~~ 388 (776)
..|.|.|||++..+ |++||++.|+|..+..+ .....||+|++
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 47999999999886 99999999999999987 67789999975
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=150.09 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=99.7
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccC-CCCCEEEEEEeecCCCC-CCceeEEE
Q 004056 291 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT 368 (776)
Q Consensus 291 VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~-e~~~~L~V~VyD~D~~~-Dd~LG~v~ 368 (776)
|++|++|+. ..|.+||||+++++..+++|+++++++||+|||+|.|.+... ...+.|.|+|||++..+ |++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999998 678999999999999999999999999999999999999753 24578999999999886 89999999
Q ss_pred EecCcccCCCccceeeecCCC----CceEEEEEEEEEec
Q 004056 369 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEE 403 (776)
Q Consensus 369 I~L~~L~~~~~~~~W~~L~~~----~~GeI~LsL~~~~~ 403 (776)
++|+++..+.....|++|.+. ..|+|+++++|.+.
T Consensus 80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP 118 (127)
T ss_pred EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence 999999988888999999742 26899999999987
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=149.36 Aligned_cols=102 Identities=27% Similarity=0.521 Sum_probs=90.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-eeeEEEeeccCC-CCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~~~~kTkvikkTlNP~W-nEtF~f~V~~~e-~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|++|++|+.++. .|.+||||+++++++++||+++++++||.| ||+|.|.+...+ ..+.|.|+|||++.++ ++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6899999999999884 789999999999999999999999999999 999999997533 2368999999999986 89
Q ss_pred ceeEEEEecCcccC---CCccceeeecCC
Q 004056 363 TLGDCTINISDLRD---GQRHDMWIPLQN 388 (776)
Q Consensus 363 ~LG~v~I~L~~L~~---~~~~~~W~~L~~ 388 (776)
+||++.++|.++.. +...+.||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999987 345789999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=150.28 Aligned_cols=109 Identities=32% Similarity=0.517 Sum_probs=95.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC------
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------ 359 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~------ 359 (776)
.|+|+|++|++|+.+|..|.+||||+++++.+.++|+++++++||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~--~~~l~i~v~d~d~~~~~~~~ 79 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS--SDRIKVRVWDEDDDIKSRLK 79 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC--CCEEEEEEEECCCCcccccc
Confidence 5899999999999999999999999999998899999999999999999999988642 46899999999852
Q ss_pred ------CCCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEE
Q 004056 360 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI 398 (776)
Q Consensus 360 ------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL 398 (776)
.+++||++.+++.++. ...+.|+.|++. ..|+|+|++
T Consensus 80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 4999999999999875 346799999852 278888864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.69 E-value=6e-17 Score=154.89 Aligned_cols=115 Identities=25% Similarity=0.412 Sum_probs=98.1
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
...+++.|.+..|.|.|+|++|++|+.++.+|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+. .
T Consensus 3 ~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~ 82 (136)
T cd08402 3 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQK 82 (136)
T ss_pred EEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCC
Confidence 35789999999999999999999999999999999999999953 46789999999999999999999874322 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
..|.|+|||++.++ |++||++.+++... +.....|+++...
T Consensus 83 ~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~ 124 (136)
T cd08402 83 VHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS 124 (136)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence 47999999999987 89999999999863 4456778877543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-17 Score=148.46 Aligned_cols=101 Identities=27% Similarity=0.531 Sum_probs=88.0
Q ss_pred eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeecCC
Q 004056 285 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH 358 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~ 358 (776)
|+|+|+|++|++|+..|.. |.+||||++++.+ ..++|+++++|+||.|||+|.|.+...+ ....|.|+|||+|.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 9999999999854 5689999999999999999999886432 24689999999999
Q ss_pred CC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 359 FV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 359 ~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
++ |++||++.++|.++.. ...|++++.
T Consensus 81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIE---DRNWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhc---CCCCCcccc
Confidence 87 9999999999999983 457887763
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=148.38 Aligned_cols=109 Identities=25% Similarity=0.447 Sum_probs=94.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC---CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg-~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~---Dd 362 (776)
|+|+|++|++|+.++..|.+||||+++++ .+.++|+++++++||.|||+|.|.+.. .+.|.|+|||++.++ |+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~ 78 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG 78 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence 79999999999999999999999999996 578999999999999999999999974 478999999999875 47
Q ss_pred ceeEEEEecCcccCCC-ccceeeecCCCC-------ceEEEEEE
Q 004056 363 TLGDCTINISDLRDGQ-RHDMWIPLQNIK-------IGRLHLAI 398 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~-~~~~W~~L~~~~-------~GeI~LsL 398 (776)
+||++.+++.++.... ....|++|+... .|+|.+++
T Consensus 79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 9999999999987544 347799996422 67777765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.1e-17 Score=154.51 Aligned_cols=114 Identities=25% Similarity=0.352 Sum_probs=98.9
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..++++.|....+.|.|+|++|+||+.+|..|.+||||++++.+ .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus 3 ~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~ 82 (136)
T cd08404 3 ELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELED 82 (136)
T ss_pred eEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCC
Confidence 45788999999999999999999999999999999999999854 3678999999999999999999987432 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|.++ +++||++.+++.. .+.....|+.|..
T Consensus 83 ~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 83 ISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 57999999999987 9999999999998 3556788998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=149.96 Aligned_cols=118 Identities=38% Similarity=0.566 Sum_probs=102.9
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCE
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~ 348 (776)
..+++.|.. +.|+|+|++|++|+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+...+..+.
T Consensus 4 ~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~ 81 (131)
T cd04026 4 IYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRR 81 (131)
T ss_pred EEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCE
Confidence 345666765 89999999999999998889999999999963 68899999999999999999999875434568
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
|.|+|||++..+ +++||++.++|.++... ..+.|++|.+.+.|+.
T Consensus 82 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~ 127 (131)
T cd04026 82 LSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY 127 (131)
T ss_pred EEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence 999999999876 99999999999999854 6789999999888874
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-17 Score=154.34 Aligned_cols=114 Identities=26% Similarity=0.398 Sum_probs=97.3
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..++++.|....+.|.|+|++|+||+.++..|.+||||++++.+ .+++|+++++++||.|||+|.|.+.... ..
T Consensus 3 ~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~ 82 (136)
T cd08405 3 ELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRE 82 (136)
T ss_pred EEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCC
Confidence 45789999999999999999999999999999999999999842 4679999999999999999999986322 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++.++ +++||++.+++.+. +...+.|++|..
T Consensus 83 ~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 83 TTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred CEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 57999999999987 99999999999976 444567776653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-17 Score=153.26 Aligned_cols=114 Identities=25% Similarity=0.436 Sum_probs=96.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
.++|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+ .+++|+++++++||.|||+|.|.+..... .
T Consensus 2 ~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~ 81 (134)
T cd08403 2 ELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDN 81 (134)
T ss_pred eEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCC
Confidence 35789999999999999999999999999999999999999853 36799999999999999999999864222 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++..+ +++||++.+++. ..+.....|+.+..
T Consensus 82 ~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~ 122 (134)
T cd08403 82 VSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLA 122 (134)
T ss_pred CEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHH
Confidence 46999999999987 999999999987 33445677887643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-17 Score=154.75 Aligned_cols=115 Identities=19% Similarity=0.349 Sum_probs=97.8
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+..++|.|+...+.|.|+|++|+||+.++..|.+||||++++.+ .++||+++++++||+|||+|.|.+...+ .
T Consensus 3 ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~ 82 (138)
T cd08408 3 ELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLS 82 (138)
T ss_pred eEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhC
Confidence 45789999999999999999999999999999999999999964 2579999999999999999999998533 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
...|.|.|||++.++ +++||++.+++..... ...+.|..+..
T Consensus 83 ~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~ 125 (138)
T cd08408 83 EVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE 125 (138)
T ss_pred ccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence 458999999999886 9999999999875432 23567877653
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=156.76 Aligned_cols=102 Identities=32% Similarity=0.559 Sum_probs=90.6
Q ss_pred ecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----------------------------eEEEeeeecCCCCC
Q 004056 280 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----------------------------YRFRTKTQRKTLSP 330 (776)
Q Consensus 280 y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----------------------------~~~kTkvikkTlNP 330 (776)
+.++.+.|.|+|++|+||+++|.+|.+||||++++.+ ..++|+++++|+||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4678999999999999999999999999999999864 23789999999999
Q ss_pred cceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeec
Q 004056 331 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
.|||+|.|.+... ..+.|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 9999999999753 3568999999998 9999999999999984 457999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=152.11 Aligned_cols=115 Identities=21% Similarity=0.294 Sum_probs=95.2
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
..+++|.|.+..|.|.|+|++|++|+.+|..|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+. .
T Consensus 2 ~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~ 81 (135)
T cd08410 2 ELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELEN 81 (135)
T ss_pred cEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCC
Confidence 35789999999999999999999999999999999999999843 46799999999999999999999864322 2
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|..+ +++||++.+....... ...+.|..|.+
T Consensus 82 ~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 82 VSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred CEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 47999999999886 9999999876533322 23577887765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=149.32 Aligned_cols=116 Identities=27% Similarity=0.417 Sum_probs=101.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
+.++++.|....+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+.... ..
T Consensus 2 ~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~ 81 (134)
T cd00276 2 ELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEE 81 (134)
T ss_pred eEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCC
Confidence 35788999999999999999999999999889999999999965 3679999999999999999999987532 24
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
..|.|+|||.+.++ +++||++.++|++ .+...+.|++|....
T Consensus 82 ~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 82 VSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred cEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 68999999999876 9999999999999 566789999998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=144.81 Aligned_cols=114 Identities=32% Similarity=0.420 Sum_probs=98.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeecc-CC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD-S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~-~e-~ 345 (776)
..++++.|++..+.|+|+|++|++|++.+..+.+||||++++.+ ..++|+++++++||.|||+|.|.... .+ .
T Consensus 3 ~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 3 TLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 45788999999999999999999999999889999999999843 47899999999999999999996332 11 2
Q ss_pred CCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeec
Q 004056 346 PNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
...|.|+|||++.+++++||++.++|+++..+..++.|+.|
T Consensus 83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 35899999999988899999999999999988777777654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.2e-16 Score=151.90 Aligned_cols=106 Identities=22% Similarity=0.355 Sum_probs=90.0
Q ss_pred EEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 287 ARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G--------------~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
|.|+|++|++|+.+|.++ .+||||++.+++++.+|+++++++||+|||+|.|.+......+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999998543 689999999999999999999999999999999997644445789999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCc-------cceeeecCCCCce
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG 392 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~-------~~~W~~L~~~~~G 392 (776)
|||+|..+ |++||++.++|.++...+. ...|+.|-+..+|
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 99999985 9999999999999876542 2567777654444
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=151.42 Aligned_cols=115 Identities=17% Similarity=0.231 Sum_probs=98.6
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
...++|.|.+..+.|.|+|++|+||++.+ .+.+||||++++.+ .+++|+++++++||+|||+|.|.+...+. .
T Consensus 3 ~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~ 81 (137)
T cd08409 3 DIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDT 81 (137)
T ss_pred EEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCc
Confidence 35688999999999999999999999998 78899999999865 36799999999999999999999974332 3
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|+|||++..+ +++||++.++......+...+.|..+..
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 82 ASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred cEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 58999999999876 9999999999776666666778877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=144.04 Aligned_cols=104 Identities=25% Similarity=0.360 Sum_probs=88.9
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCce
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~L 364 (776)
+.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||+|.|.+... ...|.|+|||+|..+||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~--~~~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRL--DLGLVIELWNKGLIWDTLV 75 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCC--CCEEEEEEEeCCCcCCCce
Confidence 67999999999997654 4599999999999999999988 4999999999999753 3459999999998889999
Q ss_pred eEEEEecCcccCCCcc--ceeeecCC---CCceEE
Q 004056 365 GDCTINISDLRDGQRH--DMWIPLQN---IKIGRL 394 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~--~~W~~L~~---~~~GeI 394 (776)
|++.++|+++..+... ..||+|.+ .+.|++
T Consensus 76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~ 110 (127)
T cd08394 76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQI 110 (127)
T ss_pred EEEEEEhHHcccCCCCCCCccEecChHHhccCCeE
Confidence 9999999999876554 89999985 234554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-16 Score=143.96 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=94.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCcceeeEEEeeccCC--CCCEEEEEEeecCCCC-
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikk-TlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~~~- 360 (776)
|.|.|+|++|++|+..+..+.+||||+++++.+.++|+++++ ++||.|||+|.|.+.... ..+.|.|+|||.+.++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 689999999999999998899999999999988899999875 999999999999998642 2468999999999986
Q ss_pred CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 361 DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
+++||++.++|.++..++..+.|+.|++.
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~ 109 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEPGTAELVPA 109 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence 99999999999999988888999999874
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-16 Score=147.86 Aligned_cols=103 Identities=27% Similarity=0.417 Sum_probs=91.8
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcceeeEEEeeccCC--
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvikkTlNP~WnEtF~f~V~~~e-- 344 (776)
..+++.|....+.|+|+|++|++|+.++..|.+||||++++.+ ..++|+++++|+||+|||+|.|.+...+
T Consensus 5 l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~ 84 (133)
T cd04009 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCS 84 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcc
Confidence 4678899999999999999999999999889999999999963 4789999999999999999999987421
Q ss_pred -CCCEEEEEEeecCCCC-CCceeEEEEecCcccC
Q 004056 345 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (776)
Q Consensus 345 -~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~ 376 (776)
....|.|+|||++.++ +++||++.++|+++..
T Consensus 85 ~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 85 VEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 2358999999999987 9999999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-17 Score=172.21 Aligned_cols=234 Identities=21% Similarity=0.259 Sum_probs=184.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
..||.+.|......+.++|..|++|++++.++..|||+++.+++ .+++|++..+++||.|||+-.......+ .
T Consensus 81 ~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 81 ALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred chhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 46899999999999999999999999999999999999999987 4689999999999999997665533211 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc--ceeeecCC----------CCceEEEEEEEEEec---------
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN----------IKIGRLHLAITVLEE--------- 403 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~--~~W~~L~~----------~~~GeI~LsL~~~~~--------- 403 (776)
.+.+++.|+|.+.+. .+++|+..++|..+...+.. ..|+.-.- ..+|+|.+++.|...
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~i 240 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTII 240 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEE
Confidence 357899999999987 89999999999988876543 33432211 247999988876543
Q ss_pred --------CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec-C-eee
Q 004056 404 --------SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE-G-QQE 473 (776)
Q Consensus 404 --------~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~-G-~~~ 473 (776)
..+..+|||++..+ ..+.++.-||||.++|++.||.|++.++++.+..++......+.+.+++ | ...
T Consensus 241 Rc~~l~ssDsng~sDpyvS~~l---~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d 317 (362)
T KOG1013|consen 241 RCSHLASSDSNGYSDPYVSQRL---SPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSND 317 (362)
T ss_pred EeeeeeccccCCCCCccceeec---CCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCcc
Confidence 23345899999988 3566777889999999999999999999999888888777777777776 3 222
Q ss_pred e--eEEE-ecCCcccccccccccCCCCCccceEeecCCc
Q 004056 474 T--GIWV-HQPGSEVAQTWEPRKGKNRRLDTLVRRVPNG 509 (776)
Q Consensus 474 ~--gv~~-~~pg~~~~~~W~~~~~~~r~~~~q~~~~~~~ 509 (776)
. |+-. ...-+++..||-.++..++.+...||++.+.
T Consensus 318 ~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 318 SIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred CCCcccccccccchhhcCccccccccccccccccccccc
Confidence 2 2221 1222356799999999999999999999865
|
|
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=144.44 Aligned_cols=94 Identities=27% Similarity=0.342 Sum_probs=83.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
....|.|+|+|++|++|+. +..|.+||||+|++++++++|+++++++||+|||+|.|........+.|.|+|||++.++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s 102 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW 102 (127)
T ss_pred cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence 4567999999999999984 677899999999999999999999999999999999997543334678999999999986
Q ss_pred -CCceeEEEEecCccc
Q 004056 361 -DDTLGDCTINISDLR 375 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~ 375 (776)
|++||++.++|....
T Consensus 103 ~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 103 DDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCeeEEEEEEecCCc
Confidence 999999999999665
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=139.42 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=87.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC---CCCEEEEEEeecCCCC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e---~~~~L~V~VyD~D~~~ 360 (776)
...|+|+|++|++|+ +|.+||||++++++++++|+++++++||.|||+|.|.+.... ....|.|+|||++.++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 357999999999998 578999999999999999999999999999999999975322 1357999999999886
Q ss_pred -CCceeEEEEecCcccCCC---ccceeeecCC
Q 004056 361 -DDTLGDCTINISDLRDGQ---RHDMWIPLQN 388 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~---~~~~W~~L~~ 388 (776)
+++||++.++|+++..+. ....|++|.+
T Consensus 79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999999997653 3578999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-16 Score=172.19 Aligned_cols=118 Identities=34% Similarity=0.517 Sum_probs=104.2
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEE
Q 004056 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (776)
Q Consensus 276 fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~ 350 (776)
.-++..-....|+|+|.+|+||.+||.+|.+||||++.+-| .+++|++++.||||+|||+|+|.+...+..+.|.
T Consensus 171 l~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls 250 (683)
T KOG0696|consen 171 LYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS 250 (683)
T ss_pred EEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeE
Confidence 33444556788999999999999999999999999999976 4789999999999999999999998777778999
Q ss_pred EEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 351 IEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 351 V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
|+|||+|+.+ +||+|...+.+++|... ..+.||.|.+...|+-
T Consensus 251 iEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGEy 294 (683)
T KOG0696|consen 251 IEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGEY 294 (683)
T ss_pred EEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCce
Confidence 9999999997 99999999999999864 4789999988777763
|
|
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=143.68 Aligned_cols=111 Identities=23% Similarity=0.372 Sum_probs=95.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCcceeeEEEeeccCC---CCCEEEEEEeecCCCC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV 360 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvik-kTlNP~WnEtF~f~V~~~e---~~~~L~V~VyD~D~~~ 360 (776)
.|+|+|++|++|+..+..+.+||||++++++ ++++|+++. ++.||.|||+|.|.+...+ ....|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 4899999999999999889999999999988 889999975 5899999999999997642 1568999999999865
Q ss_pred -CCceeEEEEecCcccCCCc-----cceeeecCC---CCceEEEE
Q 004056 361 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL 396 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~-----~~~W~~L~~---~~~GeI~L 396 (776)
|++||++.++|.++..+.. ...|+.|.. +..|.|+|
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 9999999999999987654 368999975 34788764
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-15 Score=145.73 Aligned_cols=119 Identities=22% Similarity=0.241 Sum_probs=96.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcceeeEEEeeccCC-------CCCEEEEE
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L-----g~~~~kTkvikkTlNP~WnEtF~f~V~~~e-------~~~~L~V~ 352 (776)
+.|.|....+.+|++.+.++.+||||++++ .++++||+++++|+||+|||+|.|.+.... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 445555555555888888889999999997 237999999999999999999999996431 13579999
Q ss_pred EeecCCC--CCCceeEEEEecCcccCCCccceeeecCC-C--CceEEEEEEEEEec
Q 004056 353 VRDKDHF--VDDTLGDCTINISDLRDGQRHDMWIPLQN-I--KIGRLHLAITVLEE 403 (776)
Q Consensus 353 VyD~D~~--~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-~--~~GeI~LsL~~~~~ 403 (776)
|||++.+ +|++||++.++|+.+........|++|.. . ..|+|++++...+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 9999986 49999999999999988777778999874 2 37999999988764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=140.08 Aligned_cols=107 Identities=30% Similarity=0.402 Sum_probs=94.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|+|++|++|+..+..|.+||||+++++. ..++|++++++.||.|||+|.|.+... .+.|.|+|||++.++ |+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~--~~~L~v~v~d~~~~~~d~ 78 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP--NQKITLEVMDYEKVGKDR 78 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 68999999999999999899999999999976 678999999999999999999988753 468999999999987 89
Q ss_pred ceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
+||++.++|.++..+ ..+.||.|-+...+.+
T Consensus 79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~ 109 (120)
T cd04045 79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL 109 (120)
T ss_pred eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence 999999999999876 5678888876555543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=138.61 Aligned_cols=100 Identities=24% Similarity=0.445 Sum_probs=88.3
Q ss_pred CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccC-CCc
Q 004056 302 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR 379 (776)
Q Consensus 302 ~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~-~~~ 379 (776)
.+|.+||||++++++ ..++|++++++.||.|||+|.|.+.+. ....|.|.|||.+.+++++||++.++|+++.. ...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 578999999999987 468999999999999999999999753 34679999999998889999999999999854 345
Q ss_pred cceeeecCCCCceEEEEEEEEEe
Q 004056 380 HDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 380 ~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
.+.|++|.+...|+|+++++|.|
T Consensus 88 ~~~w~~L~~~~~G~i~~~~~~~p 110 (111)
T cd04052 88 GQQWFPLSGNGQGRIRISALWKP 110 (111)
T ss_pred cceeEECCCCCCCEEEEEEEEec
Confidence 68999999878999999999987
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=137.43 Aligned_cols=101 Identities=39% Similarity=0.625 Sum_probs=91.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|+|+|++|++|+..+..|.+||||++++.+ ..++|+++.+++||.|||+|.|.+... ..+.|.|+|||++..+ +++|
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i 79 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL 79 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence 579999999999999889999999999976 568999999999999999999998753 3578999999999886 9999
Q ss_pred eEEEEecCcccCCCccceeeecCC
Q 004056 365 GDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 365 G~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|++.+++.++..+...+.|++|.+
T Consensus 80 G~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 80 GSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred EEEEEEHHHcCCCCcEEEEEECcC
Confidence 999999999998888899999985
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=143.68 Aligned_cols=102 Identities=28% Similarity=0.438 Sum_probs=91.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCcceeeEEEeeccCC--------------CCCE
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV 348 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg----~~~~kTkvikkTlNP~WnEtF~f~V~~~e--------------~~~~ 348 (776)
|+|+|++|++|+.+ ..|.+||||+++++ .+.++|+++.++.||.|||+|.|.+.... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78999999999998 67899999999999999999999987531 2458
Q ss_pred EEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 349 L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
|.|+|||++..+ +++||++.++|.++........|++|++.
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 999999999985 99999999999999877788999999874
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.1e-15 Score=174.03 Aligned_cols=119 Identities=24% Similarity=0.394 Sum_probs=104.7
Q ss_pred eeEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EEE
Q 004056 284 VAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RFR 320 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~------------------------------------------~G~sDPYVkv~Lg~~-~~k 320 (776)
.|.|.|+|.+|++|+.||+ .+++||||+|.++.+ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 5899999999999986432 246799999999874 679
Q ss_pred eeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCC------CceEE
Q 004056 321 TKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRL 394 (776)
Q Consensus 321 TkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI 394 (776)
|+++++++||+|||+|.|.+... ...|.|+|||+|.+++++||++.|||.++..+...+.|++|.+. ..|+|
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~--~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl 170 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP--FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI 170 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC--CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence 99999999999999999999863 35899999999999999999999999999999999999999652 36799
Q ss_pred EEEEEEEecC
Q 004056 395 HLAITVLEES 404 (776)
Q Consensus 395 ~LsL~~~~~~ 404 (776)
+|+|+|.+..
T Consensus 171 ~v~lqf~pv~ 180 (868)
T PLN03008 171 FIDMKFTPFD 180 (868)
T ss_pred EEEEEEEEcc
Confidence 9999999973
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-15 Score=143.71 Aligned_cols=94 Identities=31% Similarity=0.579 Sum_probs=85.6
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
.|.|+|+|++|++|+..+. +.+||||+++++++.++|+++++++||.|||+|.|.+... ...|.|+|||++.++ |+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~--~~~l~~~V~D~d~~~~dd 77 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP--MAPLKLEVFDKDTFSKDD 77 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC--CCEEEEEEEECCCCCCCC
Confidence 3789999999999999987 8999999999999999999999999999999999999863 578999999999987 99
Q ss_pred ceeEEEEecCcccCCCcc
Q 004056 363 TLGDCTINISDLRDGQRH 380 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~ 380 (776)
+||++.++|.++......
T Consensus 78 ~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 78 SMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEEEEEEHHHhhhhhhh
Confidence 999999999998765433
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=133.75 Aligned_cols=108 Identities=32% Similarity=0.450 Sum_probs=86.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCC-CCEEEEEEeecCCCC-CCc
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-DDT 363 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~-~~~L~V~VyD~D~~~-Dd~ 363 (776)
|.|+|++|++|+.. |.+||||+++++++ .++|+++++ +||.|||+|.|.+...+. ...|.|.+||.+... +.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999884 589999999 999999999999975332 246888888887654 555
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEE
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV 400 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~ 400 (776)
+|.+ +|..+..+...+.|++|++. ..|+|+|++.|
T Consensus 78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 6655 55555557778999999863 37999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=137.89 Aligned_cols=115 Identities=29% Similarity=0.379 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~--~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
+|+|+|++|++|+++|..|.+||||+++++++. .+|+++++++||.|||+|.|.+... ..+.|.|+|||+|.++ |+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~-~~~~L~~~V~d~d~~~~dd 79 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP-GNSILKISVMDYDLLGSDD 79 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCC-CCCEEEEEEEECCCCCCCc
Confidence 489999999999999999999999999998854 5788899999999999999988643 3568999999999986 99
Q ss_pred ceeEEEEecCcccCCCccceeeecCC--CCceEEEEEEEEEe
Q 004056 363 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE 402 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~L~~--~~~GeI~LsL~~~~ 402 (776)
+||++.++|++... ..+..|.-+.. .+.|.++..-.+.+
T Consensus 80 ~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 80 LIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKP 120 (124)
T ss_pred eeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCc
Confidence 99999999998764 22333333332 24677766554443
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=137.93 Aligned_cols=109 Identities=27% Similarity=0.365 Sum_probs=91.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-eeeEEEeeccCCCCCEEEE
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI 351 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------------~~~kTkvikkTlNP~W-nEtF~f~V~~~e~~~~L~V 351 (776)
+..|++++|+||+ ++..|++||||++++.+ ++++|+++++++||+| ||+|.|.+.. .+.|.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v 77 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI 77 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence 4678999999998 77889999999999954 3689999999999999 9999999863 368999
Q ss_pred EEeecCCCC----CCceeEEEEecCcccCCC---ccceeeecCCC-----CceEEEEEE
Q 004056 352 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI 398 (776)
Q Consensus 352 ~VyD~D~~~----Dd~LG~v~I~L~~L~~~~---~~~~W~~L~~~-----~~GeI~LsL 398 (776)
+|||++..+ +++||++.++|.++..+. ....|++|+.. -+|+|.+.+
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999986542 799999999999997553 36789999853 268887765
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-14 Score=134.90 Aligned_cols=110 Identities=24% Similarity=0.437 Sum_probs=91.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
..|.|+|++|+ |...+..+.+||||+++++.+ .++|+++++++||.|||+|.|.+.. .+.|.|+|||++..+ |+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~ 77 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV 77 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence 36899999998 555555789999999999886 8999999999999999999999863 468999999999986 99
Q ss_pred ceeEEEEecCcccCCCc-----cceeeecCCC------CceEEEEEE
Q 004056 363 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI 398 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~-----~~~W~~L~~~------~~GeI~LsL 398 (776)
+||++.++|.++..... ...|++|... ..|+|++.+
T Consensus 78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999999875432 2358888532 368887765
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9e-15 Score=166.33 Aligned_cols=162 Identities=27% Similarity=0.376 Sum_probs=138.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCc
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT 363 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~ 363 (776)
..|.|.|.+|+||++.+..|.+||||.|.+.. ..+||.++.+++.|.|.|+|+|.++. .-+.|.|-|||.|...|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRDLKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccccccccc
Confidence 45899999999999999999999999999987 68999999999999999999999985 3578999999999334999
Q ss_pred eeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEEecC-C-----------------CccCCCccccccccc
Q 004056 364 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEES-A-----------------KGVDSPCDGGTLNKE 420 (776)
Q Consensus 364 LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~~-~-----------------k~~~dP~vkv~L~~e 420 (776)
||.+.|.=.+|......+.|+.|... -+|+|||++.+.+.. . +..+|||+.+.+
T Consensus 83 IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~--- 159 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTL--- 159 (800)
T ss_pred cceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEee---
Confidence 99999998888877788999999863 289999999998761 1 123799999877
Q ss_pred CCCCcccccccceeecCCCceEEEecccccCC
Q 004056 421 GMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 421 ~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
.++-+.+.++|.+++++.||.|++.+-+.+-
T Consensus 160 -~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~ 190 (800)
T KOG2059|consen 160 -CGPSKLKEKKTKVKKKTTNPQFDEVFYFEVT 190 (800)
T ss_pred -cccchhhccccceeeeccCcchhhheeeeec
Confidence 3445556689999999999999987766653
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=134.14 Aligned_cols=97 Identities=20% Similarity=0.337 Sum_probs=85.0
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC----C
Q 004056 291 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F 359 (776)
Q Consensus 291 VieA~~L~~~D~~G~sDPYVkv~Lg~~-------~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~----~ 359 (776)
.++|++|++++..|.+||||++++.+. .++|+++++++||+|||+|.|.+.. +..+.|.|+|||+|. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence 479999999999999999999999764 4899999999999999999998653 234689999999997 5
Q ss_pred C-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
+ +++||++.+++.++..+.....|+.|..
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 4 9999999999999998877888999853
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-14 Score=135.49 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=96.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCC-C--
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F-- 359 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~-~-- 359 (776)
...|.|.|++|++|++++ +|||.+.|+... .||+++.++.||.|+|.|.|.... ....|.|.||+.+. .
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~ 82 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKK 82 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCcccc
Confidence 367999999999999865 899999999965 699999999999999999997654 23679999986543 2
Q ss_pred --CCCceeEEEEecCcccCCCccceeeecCCC-------------CceEEEEEEEEEec
Q 004056 360 --VDDTLGDCTINISDLRDGQRHDMWIPLQNI-------------KIGRLHLAITVLEE 403 (776)
Q Consensus 360 --~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-------------~~GeI~LsL~~~~~ 403 (776)
++++||.+.||+.++..+...+.||+|.+. ..+.|++++.|.+.
T Consensus 83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred ccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 479999999999999998889999999752 13689999999875
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.3e-14 Score=180.34 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=106.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVD 361 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~D 361 (776)
-.|.|+|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||+|+|.+..++..+.|+|+|||+|.+++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence 3699999999999998 44689999999999975 88999999999999999999888866555789999999999998
Q ss_pred CceeEEEEecCcccCCCccceeeecCC--CCceE---EEEEEEEEe
Q 004056 362 DTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE 402 (776)
Q Consensus 362 d~LG~v~I~L~~L~~~~~~~~W~~L~~--~~~Ge---I~LsL~~~~ 402 (776)
+.||++.|+|.++..++....||+|.+ .+.|+ |++.+.|.+
T Consensus 2056 d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2056 SSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence 899999999999999999999999986 57898 999998864
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=126.42 Aligned_cols=111 Identities=23% Similarity=0.486 Sum_probs=92.4
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 286 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 286 vL~V~VieA~~L~~~D--~~G~sDPYVkv~Lg------~~~~kTkvikkTl-NP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
.|+|+|++|++|+.++ ..+.+||||++++. ..+++|+++.++. ||.|||+|.|.+...+ ...|.|+|||.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~-~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE-LAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC-eEEEEEEEEeC
Confidence 6899999999999988 57889999999993 4678999988775 9999999999988533 35799999999
Q ss_pred CCCCCCceeEEEEecCcccCCCccceeeecCC-----CCceEEEEEEEE
Q 004056 357 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV 400 (776)
Q Consensus 357 D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~~ 400 (776)
+..++++||++.++|.++..+. .|++|.+ ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCCCcceeEEEEEEE
Confidence 9888999999999999996543 5778864 236788887764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=127.44 Aligned_cols=93 Identities=26% Similarity=0.381 Sum_probs=74.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec-----
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK----- 356 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~----- 356 (776)
|.|+|++|+||+ +.+||||++++.+ .+++|+++++|+||+|||+|+|.+.. .+.|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~ 72 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV 72 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence 689999999996 5689999999964 46899999999999999999999873 57999999998
Q ss_pred --CCCC-CCceeEEEEecCc--ccCCCccceeeecC
Q 004056 357 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387 (776)
Q Consensus 357 --D~~~-Dd~LG~v~I~L~~--L~~~~~~~~W~~L~ 387 (776)
|..+ |++||.+.+.|+. +.....+...+.|.
T Consensus 73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~ 108 (118)
T cd08686 73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN 108 (118)
T ss_pred cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence 3445 9999888887753 44444444445554
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-14 Score=136.84 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=90.2
Q ss_pred ceEEEEEEEEEecCCC-------------------ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC
Q 004056 391 IGRLHLAITVLEESAK-------------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 451 (776)
Q Consensus 391 ~GeI~LsL~~~~~~~k-------------------~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L 451 (776)
.|+|+|+|+|.+...+ ..+|||+|+++ +.++++.+|+||.+++++.||+||+.+.|++
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v 77 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWNEMIMFEL 77 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccccEEEEEC
Confidence 3888888888765211 22699999999 5667888999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEecCeeee---eE-EEe-cCCcccccccccccCCCCCccceEeec
Q 004056 452 SSEKSPKVADNFEPINIEGQQET---GI-WVH-QPGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 452 p~~~~~~~~d~~~vi~~~G~~~~---gv-~~~-~pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
|.+++...+..++++++++.... |- .++ ...+...+||.+|+.+||+|++|||..
T Consensus 78 ~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L 137 (138)
T cd08407 78 PSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQL 137 (138)
T ss_pred CHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEEC
Confidence 99889999999999999854333 33 232 223344699999999999999999963
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.7e-13 Score=123.10 Aligned_cols=89 Identities=25% Similarity=0.444 Sum_probs=75.6
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccC---CCCCEEEEEEeecCCC
Q 004056 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDHF 359 (776)
Q Consensus 289 V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~---e~~~~L~V~VyD~D~~ 359 (776)
+-.++|++|+.+|..|.+||||++++.+ ..++|+++++++||+|| +|.|.+... +..+.|.|+|||++..
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 3456999999999999999999999854 35899999999999999 788876432 2256899999999998
Q ss_pred C-CCceeEEEEecCcccCCC
Q 004056 360 V-DDTLGDCTINISDLRDGQ 378 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~ 378 (776)
+ |++||++.++|+++...+
T Consensus 83 ~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 83 GKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCcEEEEEEEEHHHHhcCC
Confidence 6 999999999999998543
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.3e-13 Score=147.66 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=137.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC-----
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----- 359 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~----- 359 (776)
..++++|+.|+||.++|..|++||||...++..+.||+++...+||+|||.|+|.+++ ....+.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHHH
Confidence 5689999999999999999999999999999999999999999999999999999997 457899999999862
Q ss_pred -------CCCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEEecCCCccCCCcccccc-cccCCCCcc
Q 004056 360 -------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKGVDSPCDGGTL-NKEGMGNKE 426 (776)
Q Consensus 360 -------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~~~k~~~dP~vkv~L-~~e~~~gkr 426 (776)
+|||+|+..|.+..+. +..+.||.|+.. -+|.|+|.|.+.-.. .....||-..+- +.|
T Consensus 373 rqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisveikg-eekvapyhvqytclhe------ 443 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG-EEKVAPYHVQYTCLHE------ 443 (1283)
T ss_pred HHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEEcC-ccccccceeeehhHhh------
Confidence 3999999999988765 568899999863 379888888776542 223345544332 000
Q ss_pred cccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeeeeEEEecCCcccccccccccCC---------CC
Q 004056 427 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGK---------NR 497 (776)
Q Consensus 427 lkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~gv~~~~pg~~~~~~W~~~~~~---------~r 497 (776)
| .|... .+. ..+..-+..|....++|..+.|.+....+..|+|. --
T Consensus 444 -------------n------lfh~~--~~~----~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthfa 498 (1283)
T KOG1011|consen 444 -------------N------LFHAH--TDD----GEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFA 498 (1283)
T ss_pred -------------h------hHHhh--hcc----cceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0 00000 000 01111123455555777777777777777777773 35
Q ss_pred CccceEeecCC
Q 004056 498 RLDTLVRRVPN 508 (776)
Q Consensus 498 ~~~~q~~~~~~ 508 (776)
|+-+.+.|.|-
T Consensus 499 cl~skymcpgv 509 (1283)
T KOG1011|consen 499 CLSSKYMCPGV 509 (1283)
T ss_pred HHhhcccCCCc
Confidence 77788888773
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=109.52 Aligned_cols=81 Identities=35% Similarity=0.644 Sum_probs=73.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|+|+|++|+||+..+..+..||||++++.. ..++|+++.++.+|.|||+|.|.+...+ .+.|.|+|||++..+ |+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence 789999999999988888999999999977 6799999999999999999999977543 345999999999998 99
Q ss_pred ceeEEE
Q 004056 363 TLGDCT 368 (776)
Q Consensus 363 ~LG~v~ 368 (776)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-12 Score=140.86 Aligned_cols=113 Identities=27% Similarity=0.428 Sum_probs=95.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~ 346 (776)
+...|+|.|.+..|.|+|.|++|++|+.++.++.+||||++++.. .+.+|.+.++++||+|||+|.|.|+.....
T Consensus 285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 357899999999999999999999999999999999999999854 578999999999999999999998853332
Q ss_pred -CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 347 -NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 347 -~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
-.|.|+|||+|.++ +++||.|.+.... .+.....|..+
T Consensus 365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m 404 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEM 404 (421)
T ss_pred eeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHH
Confidence 37999999999998 8899999988775 33334455544
|
|
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-12 Score=124.11 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred eEEEEEEEEEecC-----------------CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC
Q 004056 392 GRLHLAITVLEES-----------------AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 454 (776)
Q Consensus 392 GeI~LsL~~~~~~-----------------~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~ 454 (776)
|+|+++|+|.+.. ....+|||+++++ ...+++..|+||.+++++.||+||+.+.|+++..
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l---~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~ 78 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYL---LQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI 78 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEE---EeCCccccccCCccccCCCCCeeceeEEEECCHH
Confidence 7777777776542 1235799999999 4567777889999999999999999999999988
Q ss_pred CCCCCCCceEEEEecCe--eee-eEE-Ee--cCCcccccccccccCCCCCccceEee
Q 004056 455 KSPKVADNFEPINIEGQ--QET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~--~~~-gv~-~~--~pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+.......+.+++.+.. .+. |-. ++ ..| ...+||.+|+.+||+++++||.
T Consensus 79 ~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g-~~~~hW~~ml~~~~~~v~~WH~ 134 (136)
T cd08406 79 VLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASG-MGLSHWNQMLASLRKPVAMWHP 134 (136)
T ss_pred HhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCC-hhHHHHHHHHHCCCCeeeEeee
Confidence 88899999999999843 222 433 33 233 4469999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=102.79 Aligned_cols=99 Identities=44% Similarity=0.831 Sum_probs=87.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CCce
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL 364 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd~L 364 (776)
|.|+|++|++|......+..+|||.+.+.. ..++|.++.++.||.|||.|.|.+... ....|.|+||+.+... +.+|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i 79 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL 79 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence 578999999998877778899999999988 899999999999999999999999852 3468999999999887 9999
Q ss_pred eEEEEecCccc-CCCccceeeec
Q 004056 365 GDCTINISDLR-DGQRHDMWIPL 386 (776)
Q Consensus 365 G~v~I~L~~L~-~~~~~~~W~~L 386 (776)
|.+.+++..+. .......|++|
T Consensus 80 g~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 80 GEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEeHHHhhhcCCcCcceecC
Confidence 99999999998 66677888865
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-11 Score=102.98 Aligned_cols=94 Identities=39% Similarity=0.614 Sum_probs=82.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~---~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.... .+.|.|+|||.+..+ +.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~ 80 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD 80 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence 7899999999998876678899999999874 899999999999999999999998642 678999999999876 99
Q ss_pred ceeEEEEecCcccCCCccc
Q 004056 363 TLGDCTINISDLRDGQRHD 381 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~ 381 (776)
++|.+.++|.++..+..+.
T Consensus 81 ~~G~~~~~l~~~~~~~~~~ 99 (101)
T smart00239 81 FIGQVTIPLSDLLLGGRHE 99 (101)
T ss_pred eeEEEEEEHHHcccCcccc
Confidence 9999999999988765443
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.2e-11 Score=112.57 Aligned_cols=94 Identities=30% Similarity=0.465 Sum_probs=79.1
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CcceeeEEEeeccCC-------------
Q 004056 287 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTWD------------- 344 (776)
Q Consensus 287 L~V~VieA~~L~~~D--~~G--~sDPYVkv~Lg~---~~~kTkvikkTlN--P~WnEtF~f~V~~~e------------- 344 (776)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.|+.+++| |.||+.|.|++....
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966544 366 499999999975 6799999999999 999999999876411
Q ss_pred ---------CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc
Q 004056 345 ---------SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 345 ---------~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~ 380 (776)
....|.++|||+|.++ |++||++.++|..+..+...
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~~ 127 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAKT 127 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccccc
Confidence 2357999999999997 99999999999998876543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=137.76 Aligned_cols=109 Identities=35% Similarity=0.537 Sum_probs=97.5
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
-.+.|.|.|.+..|.||+..|.+|.+||||++.+.. ..|+|+++++|+||+|||.|.++|.+. ....|.+.|+|+|..
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r-~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNR-VKDVLTINVNDWDSG 1114 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeecc-ccceEEEEEeecccC
Confidence 346899999999999999999999999999999987 489999999999999999999999863 456899999999998
Q ss_pred C-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 360 V-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
. ++.||.+.++|..+..+.....-++|.+..
T Consensus 1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038 1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred CCccccccccccHhhcCcCCccceeeeccCcc
Confidence 6 999999999999999888777777777643
|
|
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.4e-11 Score=115.16 Aligned_cols=97 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eEE-Eec---
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GIW-VHQ--- 480 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv~-~~~--- 480 (776)
..|||+++++. ..+++.+++||.+++++.||+||+.+.++++.++.......+.+++.++.... |-. ++.
T Consensus 34 ~~d~yVkv~l~---~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 34 HTSVYVKVSLM---IHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCeEEEEEEE---ECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence 47999999983 34566678899999999999999999999988888888889999998843332 333 331
Q ss_pred CCcccccccccccCCCCCccceEeecC
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
..+....||.+|+.+||.++++||..|
T Consensus 111 ~~~~~~~hW~~~~~~p~~~i~~WH~l~ 137 (137)
T cd08409 111 ARGKELEHWNDMLSKPKELIKRWHALG 137 (137)
T ss_pred CCChHHHHHHHHHhCCCCceeEEEeCC
Confidence 223445999999999999999999754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.07 E-value=7e-11 Score=114.07 Aligned_cols=97 Identities=15% Similarity=0.098 Sum_probs=77.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---e-EEEe--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---G-IWVH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---g-v~~~--~ 480 (776)
...||||++++.. ..++++.++||.+++++.||+||+.+.+.++..+....+..+.++++++.... | +.++ .
T Consensus 34 ~~~dpyVkv~llp--~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 34 KAPDTYVKLTLLN--SDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCCeeEEEEEEe--CCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 3579999999842 24556678999999999999999999999998888888999999999842222 3 3333 3
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.|.+...||..|+.+||+|+++||.
T Consensus 112 ~~~~~~~hW~~~l~~~~~~v~~WH~ 136 (138)
T cd08408 112 SGEEEEEHWNEMKESKGQQVCRWHT 136 (138)
T ss_pred CCchHHHHHHHHHhCCCCEEeEeee
Confidence 4545569999999999999999995
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=129.06 Aligned_cols=118 Identities=18% Similarity=0.354 Sum_probs=102.3
Q ss_pred eeEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCcceeeEEEeeccC
Q 004056 284 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW 343 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D------------------~~G~sDPYVkv~Lg~-~~~kTkvikkT-lNP~WnEtF~f~V~~~ 343 (776)
.|.|.|+|.+|++|+.++ ..+++||||.+.++. ...||+++.+. .||.|||+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 589999999999998642 135789999999987 67899999884 6999999999999863
Q ss_pred CCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceeeecCCCC------ceEEEEEEEEEec
Q 004056 344 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK------IGRLHLAITVLEE 403 (776)
Q Consensus 344 e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~------~GeI~LsL~~~~~ 403 (776)
...+.|.|.|.|.++..+||.+.+|+.++..+...+.|+++.+.. .-+||++++|.+.
T Consensus 87 --~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 --ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred --cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 467999999999999999999999999999999999999996522 2389999999986
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=123.25 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=87.4
Q ss_pred eEEEEEEEEecCCCC-----CCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe
Q 004056 285 AYARVEVVEASDMKP-----SDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 285 GvL~V~VieA~~L~~-----~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy 354 (776)
..|.|+|+.|++++. .+.....||||+|.+.+ ..++|++..++.||+|||+|.|.+..++ -..|+|+||
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V~ 487 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEVY 487 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEEE
Confidence 579999999999751 12235689999999954 4678888888999999999999998654 347999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEE
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV 400 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~ 400 (776)
|+|... ++|+|++.+|+..|..|. ++++|.+.. .-.|.+++.|
T Consensus 488 D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 488 DYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred ecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCCceEEEEEEe
Confidence 999876 999999999999999887 345665432 2345555544
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5e-10 Score=127.86 Aligned_cols=101 Identities=29% Similarity=0.415 Sum_probs=90.3
Q ss_pred eeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCcceeeEEEeeccCC---C
Q 004056 276 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD---S 345 (776)
Q Consensus 276 fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvikkTlNP~WnEtF~f~V~~~e---~ 345 (776)
....|......|.|.|+.|+++.+.|.+|.+||||+|.++| ..++|+|+.+|+||+|+|+|+|.|+... .
T Consensus 938 vr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te 1017 (1103)
T KOG1328|consen 938 VRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTE 1017 (1103)
T ss_pred EEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccc
Confidence 44678888999999999999999999999999999999998 3579999999999999999999998532 1
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD 376 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~ 376 (776)
...|.|+|+|+|..+ +||-|++.+.|+++..
T Consensus 1018 ~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1018 TAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 347999999999997 9999999999998864
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=120.12 Aligned_cols=101 Identities=29% Similarity=0.392 Sum_probs=83.7
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~------D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
...|.|+|+.|++++.. +.....||||+|.+.+ .+.+|+++.++.||+|||+|.|.+..++. ..|+|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL-Allrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL-ALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc-cEEEEE
Confidence 46899999999987531 1123459999999853 57799999999999999999999886543 479999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|||+|..+ ++++|++.+||..|..|. +|++|.+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999886 999999999999999887 4888875
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-10 Score=106.93 Aligned_cols=95 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---e-EEEe--cC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---G-IWVH--QP 481 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---g-v~~~--~p 481 (776)
..|||+++++ ..+++..+++||.+++++.||+||+.+.+.++.++.......+.+.+.+..... | +.++ ..
T Consensus 34 ~~DPyV~v~l---~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 34 GSDPFVKIQL---VHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCeEEEEEE---EcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 5799999987 234556677999999999999999999999887777666778889988743322 3 3333 24
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
|.....||..|+.++++|+++||.
T Consensus 111 ~~~~~~~W~~l~~~~~~~~~~wh~ 134 (135)
T cd08410 111 GPSETNHWRRMLNSQRTAVEQWHS 134 (135)
T ss_pred CchHHHHHHHHHhCCCCEeeEeec
Confidence 444569999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-09 Score=125.04 Aligned_cols=120 Identities=27% Similarity=0.501 Sum_probs=98.4
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------e------------------EEEeeeecCCCCC
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------Y------------------RFRTKTQRKTLSP 330 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------------~------------------~~kTkvikkTlNP 330 (776)
.|.-.|.|.+.+|+||.++|.+|.+|||+.+.+.+ + .+-|.++++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 35556788899999999999999999999987643 0 1247788999999
Q ss_pred cceeeEEEeeccCCCCCEEEEEEeecCC---------------------------------C----CCCceeEEEEecCc
Q 004056 331 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------F----VDDTLGDCTINISD 373 (776)
Q Consensus 331 ~WnEtF~f~V~~~e~~~~L~V~VyD~D~---------------------------------~----~Dd~LG~v~I~L~~ 373 (776)
+|+|.|.|.|.+. ....+++.+||+|. . .|||+|.+.|||.+
T Consensus 191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999999875 35689999999982 0 17999999999999
Q ss_pred ccCCCccceeeecCCC-----CceEEEEEEEEEec
Q 004056 374 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE 403 (776)
Q Consensus 374 L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~~~ 403 (776)
+...+ .+.||.|++. -+|.++|.+-+...
T Consensus 270 iP~~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 270 IPPDG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred CCcch-HHHHhccCcccccccccceEEEEEEEeee
Confidence 98754 8899999873 38999999966554
|
|
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-09 Score=101.17 Aligned_cols=95 Identities=17% Similarity=0.143 Sum_probs=72.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-E--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-V--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~--~~ 480 (776)
..+|||+++++. .++++..++||.+.+++.||+||+.+.+.++..+.......+.+++.+... +- |-. + ..
T Consensus 34 g~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 34 GLSDPYVKIHLM---QNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred CCCCCeEEEEEE---ECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc
Confidence 357999999883 345566778999999999999999998888766666666778888887432 22 332 2 23
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.| ....||.+|+..|+.|++|||.
T Consensus 111 ~~-~~~~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 111 TG-AELRHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred CC-hHHHHHHHHHhCCCCeeeEEEE
Confidence 43 3459999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=115.47 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=82.1
Q ss_pred eeEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~------D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
..+|.|+|+.+++++.. +.....||||+|.+-+ .+.+|++..++.||.|||+|.|.+.-++ -..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence 46899999999987521 2234579999999843 4578999999999999999999988654 3579999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|+|+|... |+|+|++.+|+..|..|.++ ++|.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~---V~L~~ 580 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHA---VPLFN 580 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccce---EeccC
Confidence 99999865 99999999999999988753 56654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.7e-08 Score=112.34 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.6
Q ss_pred eeEEEEEEEEecCCC----CC--CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEE
Q 004056 284 VAYARVEVVEASDMK----PS--DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~----~~--D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~ 352 (776)
...|.|+|+.|++++ .. +.....||||+|.+.+ .+.+|+++.++.||.|||+|.|.+..++ -..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence 357999999998853 11 1234579999999953 5779999999999999999999987644 3579999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|||+|... ++++|++.+|+..|..|.+ .++|.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 99999876 9999999999999998875 356654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-08 Score=115.31 Aligned_cols=112 Identities=27% Similarity=0.495 Sum_probs=88.4
Q ss_pred EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCcceeeEEEeeccCCCCCEEEEEEee
Q 004056 286 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (776)
Q Consensus 286 vL~V~VieA~~L~~~D----~~G~sDPYVkv~Lg~-----~~~kTk-vikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD 355 (776)
+|.|.|+.++++++.- .+..+||||.|.+.+ ...+|+ +..++-||.|+|+|+|.+..++. ..|+|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL-AliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL-ALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce-eEEEEEEEe
Confidence 6999999999766542 235689999999854 467999 56679999999999999987654 579999999
Q ss_pred cCCCC-CCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEE
Q 004056 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 356 ~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
+|..+ |||+|+..+|+..|..|.++ ++|.+. ..-.|.+++.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGYRH---VPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCceee---eeecCCCCccccceeEEEEEEEe
Confidence 99998 99999999999999988765 455543 133455555554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=112.36 Aligned_cols=114 Identities=20% Similarity=0.311 Sum_probs=89.3
Q ss_pred eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-eeeEEEeeccCCCCCEEEEE
Q 004056 285 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~---~D---~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~W-nEtF~f~V~~~e~~~~L~V~ 352 (776)
..|.|+|+.|++|+. .+ .....||||+|.+.+ .+++|+++.++.||.| ||+|.|.+..++. ..|+|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL-A~lRf~ 509 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL-ALLWFK 509 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce-eEEEEE
Confidence 479999999998731 11 233479999999843 5689999999999999 9999999886543 479999
Q ss_pred EeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEEe
Q 004056 353 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLE 402 (776)
Q Consensus 353 VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~~ 402 (776)
|+|+|..+ ++++|++.+|+..|..|.++ ++|.+.. ...|.+++.+.+
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCCCCCCCCCeEEEEEEEEcC
Confidence 99999775 99999999999999987753 5665422 456777777655
|
|
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-09 Score=98.58 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=72.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--~ 480 (776)
...|||+++++. ..+++.+++||.+.+++.||+||+.+.+.++..........+.+++++. ..+- |-. +. .
T Consensus 33 g~~dpyvkv~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 33 GFSDPYVKVSLM---CEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCceEEEEEE---eCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 357999999983 3566667889999999999999999888887666655667788999873 2232 443 22 3
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+|. ...||.+++.++++|++|||-
T Consensus 110 ~~~-~~~~w~~~~~~~~~~~~~wh~ 133 (134)
T cd08403 110 DGQ-GREHWNEMLANPRKPIAQWHQ 133 (134)
T ss_pred CCc-hHHHHHHHHHCCCCeeeEeec
Confidence 332 358999999999999999994
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-08 Score=95.28 Aligned_cols=81 Identities=9% Similarity=0.015 Sum_probs=61.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee--e-eEE-EecC-
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE--T-GIW-VHQP- 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~--~-gv~-~~~p- 481 (776)
..+|||+|++| +...+ .+|+||.++++++||+||+.+.|++|.+++......+.++++|.-.. . |-. +.-.
T Consensus 30 g~sDPYVKv~L---~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~ 105 (118)
T cd08677 30 AGCECYISGCV---SVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLAD 105 (118)
T ss_pred CCCCeEEEEEE---cCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEcccc
Confidence 34799999999 33344 45779999999999999999999999999999999999999994333 2 433 2211
Q ss_pred --Cccccccccc
Q 004056 482 --GSEVAQTWEP 491 (776)
Q Consensus 482 --g~~~~~~W~~ 491 (776)
-+...+||.+
T Consensus 106 ~~~~~~~~~W~~ 117 (118)
T cd08677 106 VSMMLGAAQWVD 117 (118)
T ss_pred ccCCccccchhc
Confidence 1233578976
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-08 Score=98.08 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=73.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eE-EE--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GI-WV--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv-~~--~~ 480 (776)
..+|||+++++. .++++..++||.+++++.||+||+.+.+.++..........+.+++.+..... |- .+ ..
T Consensus 34 g~~Dpyv~v~l~---~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 34 GLADPYVKVNLY---YGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCeEEEEEEE---cCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 357999999883 34556678899999999999999999888887777666777888988743222 33 22 23
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.+ ....||.++...+++|+++||-
T Consensus 111 ~~-~~~~~w~~l~~~~~~~i~~Wh~ 134 (136)
T cd08404 111 SG-SGGHHWKEVCNPPRRQIAEWHM 134 (136)
T ss_pred CC-chHHHHHHHHhCCCCeeeEEEe
Confidence 33 4469999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-08 Score=88.57 Aligned_cols=84 Identities=24% Similarity=0.364 Sum_probs=72.0
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCC
Q 004056 287 ARVEVVEASDMKPSD---LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD 362 (776)
Q Consensus 287 L~V~VieA~~L~~~D---~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd 362 (776)
|.|+|..|+++.-.+ ..+.+||||.++++. ++.||++ +.||.|||+|.|.+. ....+.+.|||+.....-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence 678999999998877 578899999999988 5888887 589999999999995 357899999999766677
Q ss_pred ceeEEEEecCcccC
Q 004056 363 TLGDCTINISDLRD 376 (776)
Q Consensus 363 ~LG~v~I~L~~L~~ 376 (776)
.||-.-+.|+++..
T Consensus 75 Pi~llW~~~sdi~E 88 (109)
T cd08689 75 PVGLLWLRLSDIAE 88 (109)
T ss_pred ceeeehhhHHHHHH
Confidence 88988888888764
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-08 Score=96.75 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=71.7
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-E--ecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-V--HQP 481 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~--~~p 481 (776)
..|||+++++. ..+++..++||.+.+++.||+||+.+.+.++.++.......+.+++.+... +- |-. + ...
T Consensus 35 ~~dpyV~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 35 TSDPYVKVWLM---YKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCceEEEEEE---eCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 57999999883 344555678999999999999999998888766655566788888887432 22 333 2 234
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
| ...+||.+|+..|..|+++||.
T Consensus 112 ~-~~~~~w~~~~~~~~~~~~~wh~ 134 (136)
T cd08405 112 G-LELKHWKDMLSKPRQPVAQWHR 134 (136)
T ss_pred C-chHHHHHHHHhCCCCchhEEEe
Confidence 3 4469999999999999999995
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.9e-08 Score=108.27 Aligned_cols=115 Identities=23% Similarity=0.432 Sum_probs=96.9
Q ss_pred eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcce-eeEEEeeccCC-CCCEEEEEEeecCCCC-
Q 004056 285 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~~~~kTkvikkTlNP~Wn-EtF~f~V~~~e-~~~~L~V~VyD~D~~~- 360 (776)
|.|.|.|..|++||.||. ....|.||.++++...++|.+..+++||.|| +.|.|++.+.+ ....|.|++.|+|..+
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678999999999999995 4567999999999999999999999999999 57899998654 3457999999999998
Q ss_pred CCceeEEEEecCcccCC----------CccceeeecCCC---CceEEEEEEE
Q 004056 361 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAIT 399 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~----------~~~~~W~~L~~~---~~GeI~LsL~ 399 (776)
+|-||.+.|+++.|... .....|+++-+. -+|+|.+-+.
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk 134 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK 134 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence 99999999999987542 234679998763 4788876554
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=107.79 Aligned_cols=114 Identities=22% Similarity=0.276 Sum_probs=89.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcce-eeEEEeeccCCCCCEEEEEEeecC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~Wn-EtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
-.|.|.|+.|+.|+... .|-..|||.|.+.+ ..++|.|+.|++||+|| |+|+|.|.+++ -..|+|.|||.|
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe-~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE-FAFLRFVVYEED 1142 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc-eEEEEEEEeccc
Confidence 46889999999999544 35567999999854 34456668889999999 99999999764 357999999999
Q ss_pred CCC-CCceeEEEEecCcccCCCccceeeecCCCCc-----eEEEEEEEEEec
Q 004056 358 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----GRLHLAITVLEE 403 (776)
Q Consensus 358 ~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~-----GeI~LsL~~~~~ 403 (776)
.++ ..|||++.+|+..+..|- +.++|++.-+ ..|++.+...+.
T Consensus 1143 mfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdlELaSLLv~i~m~~~ 1191 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDLELASLLVFIEMRPV 1191 (1267)
T ss_pred ccCCcceeeeeecchhhhhccc---eeeecccCchhhhhhhhheeeeEeccc
Confidence 998 679999999999998765 3467877543 445555555544
|
|
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-08 Score=92.18 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=72.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE-Eec-C
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW-VHQ-P 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~~-p 481 (776)
...|||+++++. ..+.+..++||.+++++.||+||+.+.+.++..+.......+.+++.+.. .+- |-. +.- .
T Consensus 32 ~~~DpyV~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 32 GYSDPFVKLYLK---PDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCCCcEEEEEEE---cCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 457999999983 33444567899999999999999999998877666666778888888732 222 333 332 2
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.++...||.+|+.+|+.|+++||-
T Consensus 109 ~~~~~~~W~~~l~~~~~~~~~wh~ 132 (133)
T cd08384 109 KGERLRHWLDCLKNPDKKIEAWHT 132 (133)
T ss_pred CCchHHHHHHHHhCCCCChheeec
Confidence 224458999999999999999994
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-08 Score=114.19 Aligned_cols=114 Identities=21% Similarity=0.207 Sum_probs=96.0
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC--C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD--S 345 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e--~ 345 (776)
+...++.|. .|+|.|.|..|++|+-..-+..+||||+.++.| .+.||+++++|.||.|||.........+ .
T Consensus 1514 qV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~ 1591 (1639)
T KOG0905|consen 1514 QVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQ 1591 (1639)
T ss_pred eEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhh
Confidence 445677776 899999999999996655567799999999987 4789999999999999999887633222 3
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.+.|.+.||..+... +.++|.+.++|.++...+....||.|..
T Consensus 1592 qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1592 QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred hheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 467999999999887 9999999999999998888889999975
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-07 Score=87.21 Aligned_cols=95 Identities=16% Similarity=0.199 Sum_probs=71.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee--e-eEE---Eec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE--T-GIW---VHQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~--~-gv~---~~~ 480 (776)
...|||+++++. ..+.+..++||.+.+++.||.||+.+.+.++..+.......+.+++.+.... - |-. +..
T Consensus 33 ~~~dpyv~v~l~---~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 33 GLSDPYVKVSLL---QGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCcEEEEEEE---cCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 357999999883 3445556789999999999999999888887666555667788888764222 1 433 233
Q ss_pred CCcccccccccccCCCCCccceEee
Q 004056 481 PGSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
.+....||.+++..++.++++||+
T Consensus 110 -~~~~~~~W~~l~~~~~~~~~~wh~ 133 (134)
T cd00276 110 -GGEELEHWNEMLASPRKPIARWHK 133 (134)
T ss_pred -CCcHHHHHHHHHhCCCCceEEeee
Confidence 333459999999999999999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.3e-07 Score=104.02 Aligned_cols=118 Identities=23% Similarity=0.364 Sum_probs=92.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCC--------------CC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SP 346 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e--------------~~ 346 (776)
.-+++++++++++-+.+ ++.+|||+.+...+ +..+|+++++|.+|.|||.|+|.+...+ ..
T Consensus 131 ~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~ 209 (800)
T KOG2059|consen 131 SGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDM 209 (800)
T ss_pred CcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCce
Confidence 34566677777777765 56699999999865 3469999999999999999999987531 12
Q ss_pred CEEEEEEee-cCCCC-CCceeEEEEecCcccCCCccceeeecCCC----------CceEEEEEEEEEec
Q 004056 347 NVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI----------KIGRLHLAITVLEE 403 (776)
Q Consensus 347 ~~L~V~VyD-~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~----------~~GeI~LsL~~~~~ 403 (776)
-.|++++|+ .+... ++|+|++.+++..+........||.|++. ..|.+++.++|...
T Consensus 210 l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 210 LEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred eeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 368899998 44444 99999999999998877778899999752 25788999988764
|
|
| >PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1 | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.3e-07 Score=80.26 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHhCc-ccchHHHHHHhhccchHHHHhh-cCCcccceeeeeeeecCCCCCEEeeEEEEecCCCCCeEEEEEEEEEe
Q 004056 79 NHAIEKMWP-ICMEQIASQKLLLPIIPWFLEK-YKPWTAKKALVQHLYLGRNPPMLTEMRVLRQSNDDDHMVLELGMNFL 156 (776)
Q Consensus 79 N~iL~~~Wp-~~~e~~~s~~I~~~~l~~~l~~-~kP~~i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~~d~vilDldis~~ 156 (776)
|.+++|++- ++..+.+.+.+. ..+...|++ .+|++++.+.+++++||+.||.|+++++.. ...++++.+|+++.|.
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~-~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~-~~~~g~~~~~~dv~Y~ 78 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIK-EKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPD-LDPDGELWIEFDVSYS 78 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHH-HHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccc-cCCCCCEEEEEEEEEc
Confidence 677777555 333334444443 344445555 469999999999999999999999999953 3456679999999997
Q ss_pred eCCCcchhe
Q 004056 157 TADDMSAIL 165 (776)
Q Consensus 157 ~~~D~si~l 165 (776)
| ++.+.+
T Consensus 79 G--~~~l~l 85 (91)
T PF10296_consen 79 G--GFSLTL 85 (91)
T ss_pred C--CeEEEE
Confidence 5 444443
|
These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria []. |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-06 Score=100.85 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=87.9
Q ss_pred eeEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 284 VAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~----D~-~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
.|.|.++|.+|+-+... +. +...||||.+.++. ...|| .+.-||.|||+|.+++... ....+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~-- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT-- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec--
Confidence 58999999999833221 11 11239999999987 56788 5666999999999999863 22469999988
Q ss_pred CCCCCceeEEEEecCcccCCCc-cceeeecCCCC----ce-EEEEEEEEEec
Q 004056 358 HFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----IG-RLHLAITVLEE 403 (776)
Q Consensus 358 ~~~Dd~LG~v~I~L~~L~~~~~-~~~W~~L~~~~----~G-eI~LsL~~~~~ 403 (776)
+..+||.+.+|+.++..+.. .+.|+++.+.. .| +|+++++|.+.
T Consensus 83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 132 (758)
T PLN02352 83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPA 132 (758)
T ss_pred --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence 57899999999999998866 89999996522 34 89999999987
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.6e-07 Score=85.86 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.4
Q ss_pred CCCcccccccccCCCCcccccccceeecCCC-ceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Eec--C
Q 004056 409 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQ--P 481 (776)
Q Consensus 409 ~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~-nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~~--p 481 (776)
.|||||++| +..+++++||||.++++++ ||+|||.+.|++|..+ ..+...+.+.+.+. .++- |-+ ++. .
T Consensus 35 ~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 35 LSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCcEEEEEE---EECCCcceeecCccEECCCCCceecceEEEeCCchh-heeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 478999999 5678999999999999995 6999999999998764 45777777888864 3333 544 443 2
Q ss_pred CcccccccccccCCCCCccceEee
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRR 505 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~ 505 (776)
+++...||.+|+.+||+|++|||.
T Consensus 111 ~~~~~~hW~~m~~~pr~~ia~WH~ 134 (135)
T cd08692 111 SSEAVEQWKDTIANPEKVVTKWHS 134 (135)
T ss_pred CchhhhhHHHHHhCCCCeeeEeec
Confidence 445579999999999999999995
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=9.2e-07 Score=94.80 Aligned_cols=109 Identities=29% Similarity=0.483 Sum_probs=89.8
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
...++.|.....-|.|++++|..|..+|.+|.+||||..++.+ .+.+|++.++|+||.||+.|.|.+...+ ...
T Consensus 222 i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~ 301 (362)
T KOG1013|consen 222 ILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYK 301 (362)
T ss_pred eeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcc
Confidence 4567888888999999999999999999999999999999976 4678999999999999999999988644 345
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceee
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI 384 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~ 384 (776)
.+.|.|||++..+ .+++|-+...+- ..+..+..|+
T Consensus 302 kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 302 KVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred eEEEeecccCCCcCccCCCccccccc--ccchhhcCcc
Confidence 7999999999985 899987765433 3334444454
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-06 Score=104.49 Aligned_cols=88 Identities=39% Similarity=0.522 Sum_probs=78.1
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-C
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D 361 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~--~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-D 361 (776)
..++|.|++|.+|.+.|.+|.+|||+++.+|.+. -++..+.+|+||+|++.|++...- ...+.|.+.|||+|..+ |
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~~~d 691 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLEAQD 691 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeeccccc
Confidence 4567999999999999999999999999999855 577889999999999999988764 24578999999999998 9
Q ss_pred CceeEEEEecCc
Q 004056 362 DTLGDCTINISD 373 (776)
Q Consensus 362 d~LG~v~I~L~~ 373 (776)
+.||+..++|+.
T Consensus 692 ~~iget~iDLEn 703 (1105)
T KOG1326|consen 692 EKIGETTIDLEN 703 (1105)
T ss_pred chhhceehhhhh
Confidence 999999999874
|
|
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.4e-05 Score=75.87 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=50.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+.+..++||.+++++.||+||+.+.+.++..+.......+.+++++.
T Consensus 35 ~~~DpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd04029 35 KRSNPYVKTYLL---PDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDR 95 (125)
T ss_pred CCCCcEEEEEEE---cCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCC
Confidence 357999999983 3455566789999999999999999988888777777778899999874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.5e-05 Score=75.54 Aligned_cols=61 Identities=13% Similarity=0.076 Sum_probs=50.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ....+..++||.+++++.||+||+.+.+.++..+.......+.+++++.
T Consensus 35 g~~dpyVkv~l~---p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~ 95 (125)
T cd08393 35 QRSDPYVKTYLL---PDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDS 95 (125)
T ss_pred CCCCcEEEEEEE---cCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCC
Confidence 467999999993 3344456789999999999999999999888777777778899999873
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=97.84 E-value=2e-05 Score=74.93 Aligned_cols=62 Identities=8% Similarity=-0.120 Sum_probs=52.9
Q ss_pred ccCCCcccccccccCCCCcc-cccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkr-lkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+|++|+ ...++ ..++||.+++++.||+||+.+.++++.+++......+.+++++..
T Consensus 33 ~~~dpyVKv~Ll---p~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~ 95 (124)
T cd08680 33 ENSKVYVRVALL---PCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPD 95 (124)
T ss_pred CCCCeEEEEEEc---cCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCC
Confidence 457999999994 44444 357899999999999999999999999999999999999999843
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.4e-06 Score=80.63 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=63.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecCee--ee-eEE-EecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQ--ET-GIW-VHQP 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G~~--~~-gv~-~~~p 481 (776)
...|||+++++. ..+.+..++||.+.+++.||+||+.+.+.. +..+.......+.+++.+... +- |-. +.-.
T Consensus 46 g~~DPYVkv~l~---~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~ 122 (162)
T cd04020 46 GTSDSFVKCYLL---PDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLG 122 (162)
T ss_pred CCCCCEEEEEEE---cCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCC
Confidence 457999999883 344455678999999999999999887763 344455556678888876322 21 332 2211
Q ss_pred --------------CcccccccccccCCCCCccc
Q 004056 482 --------------GSEVAQTWEPRKGKNRRLDT 501 (776)
Q Consensus 482 --------------g~~~~~~W~~~~~~~r~~~~ 501 (776)
.++...||..|+.+|++++.
T Consensus 123 ~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~ 156 (162)
T cd04020 123 TGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVE 156 (162)
T ss_pred ccccCCCccccccCChHHHHHHHHHHhCCCCeEE
Confidence 23446899999999987764
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=97.83 E-value=2e-05 Score=75.32 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=50.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...||||++++. ...++..++||.+++++.||+||+.+.+.++..++......+.+++.+.
T Consensus 35 g~~dpYVkv~ll---p~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~ 95 (128)
T cd08392 35 KKCHPYVKVCLL---PDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRT 95 (128)
T ss_pred CCCCeEEEEEEE---eCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCC
Confidence 457999999984 3344455789999999999999999999998877777888999999874
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.4e-05 Score=72.85 Aligned_cols=62 Identities=10% Similarity=-0.041 Sum_probs=50.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.+.+ |..+.......+.+++.+..
T Consensus 31 ~~~DpyVkv~l~---~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~ 93 (122)
T cd08381 31 SDPDPYVKTYLL---PDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSL 93 (122)
T ss_pred CCCCCEEEEEEe---eCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence 467999999983 334455688999999999999999999887 76677777888999998743
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=83.86 Aligned_cols=104 Identities=28% Similarity=0.486 Sum_probs=87.3
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCcceeeEEEeeccCCCCC--EEEEEEe
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPN--VLVIEVR 354 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~L-g~------~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~--~L~V~Vy 354 (776)
...++|.|+.|.+|+-. ..|.--|||.+.+ || +++.|++..++-.|.|||+|.|.+.+...+. .|.|+|-
T Consensus 1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence 35678889999999754 3577789999997 44 5788999999999999999999987643333 6999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
|+...+ |..+|-+.++|.++...+....|++|..
T Consensus 1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence 998877 8999999999999998888999999974
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.4e-05 Score=89.54 Aligned_cols=92 Identities=21% Similarity=0.380 Sum_probs=76.8
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEE-EEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYV-KGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYV-kv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
+.-.|.+.+++++|+ |+ ..|||. .+++|.+.|||.+.++|+||+||+...|.+... .....+|.|||.+++
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKN-GPHLARISVFETNRL 121 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccC-CcceEEEEEEecCCC
Confidence 345689999999998 43 258875 577888999999999999999999999999864 345679999999999
Q ss_pred C-CCceeEEEEecCcccCCCcc
Q 004056 360 V-DDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~~~~~ 380 (776)
+ ++++|.|.++|.++...+..
T Consensus 122 s~n~lv~~~e~~~t~f~~kqi~ 143 (644)
T PLN02964 122 SKNTLVGYCELDLFDFVTQEPE 143 (644)
T ss_pred CHHHhhhheeecHhhccHHHHH
Confidence 8 99999999999888765543
|
|
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.1e-05 Score=72.55 Aligned_cols=56 Identities=14% Similarity=-0.015 Sum_probs=45.7
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEE-Eec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi-~~~ 469 (776)
.+|||+|++| +..+++..|+||.++++++||+||+.+.+.++ .......++++ +.+
T Consensus 50 ~sDPYVKv~L---lp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~ 106 (146)
T cd04028 50 LPAPYVKVYL---LEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYG 106 (146)
T ss_pred CcCCeEEEEE---ECCCccccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCC
Confidence 4799999999 34566677899999999999999999999886 45556778888 454
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00013 Score=79.94 Aligned_cols=104 Identities=24% Similarity=0.277 Sum_probs=86.1
Q ss_pred ceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe-e
Q 004056 283 PVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR-D 355 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy-D 355 (776)
..|.|.|.|++|++|..+.. ...++|||+|++.+ .+.+|+...+|++|.|.....|.-.. ....|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEecc
Confidence 57899999999999998753 33789999999965 36789999999999998877776543 4578999999 5
Q ss_pred cCCCC-CCceeEEEEecCcccCCC-ccceeeecCC
Q 004056 356 KDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQN 388 (776)
Q Consensus 356 ~D~~~-Dd~LG~v~I~L~~L~~~~-~~~~W~~L~~ 388 (776)
+.++- +.|+|.+.+-|.+|.... ....||+|.+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 66665 889999999999998876 6788999975
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00089 Score=77.00 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=101.4
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC----C-CCceeEEEEecCcccCCCccceeeecCC---
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQN--- 388 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~----~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~--- 388 (776)
...+|.++++.+||.|-+.|.+... ++..|.|++.+||.+.. . ++|+|++.+.+.++........-+.|++
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~ 119 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN 119 (529)
T ss_pred cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence 3458999999999999999988877 45678999999998875 2 8999999999999886554433334443
Q ss_pred CCceEEEEEEEEEecC-----------------CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC
Q 004056 389 IKIGRLHLAITVLEES-----------------AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV 451 (776)
Q Consensus 389 ~~~GeI~LsL~~~~~~-----------------~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L 451 (776)
...|.|.+...-.... .-..+|||-..+...+ .+....-++|++.+.++||.|..-.....
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~--d~s~~~~~~tEv~~n~l~p~w~~~~i~~~ 197 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVD--DGSTQMLYRTEVVKNTLNPQWAPFSISLQ 197 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecC--CCceeeccccceeccCCCCcccccccchh
Confidence 3467776665432211 0124678877666322 56666778999999999999975333221
Q ss_pred CCCC-CCCCCCceEEEEecCe
Q 004056 452 SSEK-SPKVADNFEPINIEGQ 471 (776)
Q Consensus 452 p~~~-~~~~~d~~~vi~~~G~ 471 (776)
.... ....+..+.+.+++..
T Consensus 198 ~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 198 SLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred hhcccCCCCceEEEEeccCCC
Confidence 1121 1133445566666543
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00021 Score=63.71 Aligned_cols=96 Identities=22% Similarity=0.436 Sum_probs=69.7
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEe--C-CeEEEeeeecCCCCCcceeeEEEeeccCCCC-CEEEEEEeecCCCCCC
Q 004056 288 RVEVVEASDMKPSDLNG-LADPYVKGQL--G-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSP-NVLVIEVRDKDHFVDD 362 (776)
Q Consensus 288 ~V~VieA~~L~~~D~~G-~sDPYVkv~L--g-~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~-~~L~V~VyD~D~~~Dd 362 (776)
-++++.+++|.-....| .+--|++--+ . +..+||.+.+...||.|+|+|.|.+.-+... -+|.|.||. ..-+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-~~~RKe 80 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-QTPRKR 80 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-cCCccc
Confidence 37889999987543322 3344766333 2 3678999999999999999999998854433 379999998 333488
Q ss_pred ceeEEEEecCcccCCCccceeee
Q 004056 363 TLGDCTINISDLRDGQRHDMWIP 385 (776)
Q Consensus 363 ~LG~v~I~L~~L~~~~~~~~W~~ 385 (776)
.||.|.+.|+++-. +..+.|.+
T Consensus 81 ~iG~~sL~l~s~ge-eE~~HW~e 102 (103)
T cd08684 81 TIGECSLSLRTLST-QETDHWLE 102 (103)
T ss_pred eeeEEEeecccCCH-HHhhhhhc
Confidence 99999999998764 33566764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00022 Score=66.87 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=45.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. .. .+++||.+.+++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 35 ~~~dpyv~v~l~~---~~--~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~ 93 (124)
T cd08385 35 GTSDPYVKVYLLP---DK--KKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR 93 (124)
T ss_pred CCCCCEEEEEEEc---CC--CCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 3579999998832 12 24678999999999999999888887655555667888888874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00036 Score=66.47 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=44.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccc-cCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFS-SVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~-~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+.. . +.+++||.+.+++.||+||+.+.+ .++..+.......+.+++.+.
T Consensus 36 ~~~DpyV~v~l~~---~--~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~ 95 (128)
T cd08388 36 GTSDPYVKLQLLP---E--KEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDR 95 (128)
T ss_pred CCcCCEEEEEEeC---C--cCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCC
Confidence 4579999998832 1 124578999999999999998887 566666555667788888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0001 Score=88.33 Aligned_cols=122 Identities=20% Similarity=0.202 Sum_probs=91.0
Q ss_pred eeeeeecC-ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEe---eccC-----CC
Q 004056 275 WFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP---ISTW-----DS 345 (776)
Q Consensus 275 ~fsL~y~~-~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~---V~~~-----e~ 345 (776)
.|+..+.. ....+++.|.+|+.|.+.|..+.+|||+.+....+...|.++.+|+||.||.+..|. +... ..
T Consensus 195 ~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ 274 (1105)
T KOG1326|consen 195 EFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKN 274 (1105)
T ss_pred ceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcC
Confidence 34444432 345689999999999999999999999999999999999999999999999998774 2211 12
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC--ceEEEEE
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK--IGRLHLA 397 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~--~GeI~Ls 397 (776)
...+.|+|||.++.+ ++++|.+.....-... .....|+++.... .|++.++
T Consensus 275 ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a 328 (1105)
T KOG1326|consen 275 PPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIA 328 (1105)
T ss_pred CCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHH
Confidence 347899999999987 9999998765433222 4556788875422 4554433
|
|
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00069 Score=63.38 Aligned_cols=61 Identities=10% Similarity=-0.033 Sum_probs=44.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+....++||.+.+++.||+||+.+.+.+ +..+.......+.+++.+.
T Consensus 35 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~ 96 (125)
T cd04031 35 SLRNPYVKVYLL---PDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDR 96 (125)
T ss_pred CCCCCEEEEEEc---cCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 357999999983 233344578999999999999999887774 3344445567788888774
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00024 Score=66.98 Aligned_cols=60 Identities=13% Similarity=-0.080 Sum_probs=45.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.++++..+... ...+.+++.++
T Consensus 30 g~~dpYVkv~l~---p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~-~l~v~V~~~~~ 89 (119)
T cd08685 30 GTCNSYVKISLS---PDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQK-RLLVTVWNKLS 89 (119)
T ss_pred CCCCeeEEEEEE---eCCCCcceEeCccccCCCCCccccEEEEEcChHHhCC-EEEEEEECCCC
Confidence 457999999994 3444556789999999999999999999887655433 34577777654
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00051 Score=64.51 Aligned_cols=61 Identities=15% Similarity=0.056 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. ..++...++||.+.+++.||+||+.+.+.++..+.......+.+.+.+.
T Consensus 35 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~ 95 (127)
T cd04030 35 DIPDPYVRLYLL---PDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKS 95 (127)
T ss_pred CCCCceEEEEEE---cCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCc
Confidence 457999999983 3444567789999999999999999888887666655566667776653
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00057 Score=64.20 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..++ +++||.+.+++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 35 g~~dpyv~v~l~---~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 93 (124)
T cd08387 35 GTADPYCKVRLL---PDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCCCCeEEEEEe---cCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence 357999999883 2222 3578999999999999999998887766666677888888864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0007 Score=64.59 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=74.4
Q ss_pred EEEEEEEecCCCCCCC-------------CCCCCcEEEEEeC--C--eEEEeeeecCCCCCcceeeEEEeecc------C
Q 004056 287 ARVEVVEASDMKPSDL-------------NGLADPYVKGQLG--P--YRFRTKTQRKTLSPKWHEEFNIPIST------W 343 (776)
Q Consensus 287 L~V~VieA~~L~~~D~-------------~G~sDPYVkv~Lg--~--~~~kTkvikkTlNP~WnEtF~f~V~~------~ 343 (776)
|.|.|++|.||+.... .-.-++||++.+. + ...+|+++.++..|.|+.+++|.++- .
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678889998875421 1124799999863 3 67899999999999999999998761 0
Q ss_pred C--------CCCEEEEEEeecCCC-----------CCCceeEEEEecCcccCC-Cccceeeec
Q 004056 344 D--------SPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDG-QRHDMWIPL 386 (776)
Q Consensus 344 e--------~~~~L~V~VyD~D~~-----------~Dd~LG~v~I~L~~L~~~-~~~~~W~~L 386 (776)
+ ....+.|+||+.... +|-.||.+.||+.+|... .....||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 123689999987643 255899999999998754 356789875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00081 Score=63.73 Aligned_cols=62 Identities=6% Similarity=-0.093 Sum_probs=47.6
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-CCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-~~~~~~d~~~vi~~~ 469 (776)
+.+|||+++++... ..+.+.+++||.++++++||+||+.+.|+++.+ ........+++.+++
T Consensus 18 g~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 18 GMFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred CCCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 46799999998421 123444567899999999999999999999865 455566788999886
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00052 Score=64.97 Aligned_cols=74 Identities=22% Similarity=0.151 Sum_probs=54.4
Q ss_pred ceEEEEEEEEEecC------------C-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CC
Q 004056 391 IGRLHLAITVLEES------------A-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VS 452 (776)
Q Consensus 391 ~GeI~LsL~~~~~~------------~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp 452 (776)
.|+|++++.|.+.. . ....|||+++.+.. . + ..++||.++++ .||+||+.+.+. ++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp---~-~-~~~~kTkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLP---S-K-KQRAKTKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEcc---C-C-cceeecccccC-CCCcccCEEEECCCC
Confidence 47777777666532 1 13468999987732 2 2 25678989888 999999999998 77
Q ss_pred CCCCCCCCCceEEEEecC
Q 004056 453 SEKSPKVADNFEPINIEG 470 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G 470 (776)
.++.......+.+++++.
T Consensus 76 ~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 76 PEELNNMALRFRLYGVER 93 (124)
T ss_pred HHHhccCEEEEEEEECCC
Confidence 777777888899999874
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00086 Score=62.53 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=46.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+....++||.+++++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 34 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~ 94 (123)
T cd08521 34 KRSNPYVKVYLL---PDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDR 94 (123)
T ss_pred CCCCcEEEEEEe---cCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence 357999999883 2333445789999999999999999888887666555566777777763
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0016 Score=64.53 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=57.2
Q ss_pred ceEEEEEEEEE---ec-CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC------CCCCCC
Q 004056 391 IGRLHLAITVL---EE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE------KSPKVA 460 (776)
Q Consensus 391 ~GeI~LsL~~~---~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~------~~~~~~ 460 (776)
.|+|.+..+-- +. ......|||+++++ .+.+.+..+.||.+++++.||+||+.+.+.++.. .....+
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l---~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEF---PYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEE---ecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 46666555432 12 22346899999988 4556667889999999999999999998888655 245677
Q ss_pred CceEEEEecC
Q 004056 461 DNFEPINIEG 470 (776)
Q Consensus 461 d~~~vi~~~G 470 (776)
..+++++.++
T Consensus 80 L~~~V~d~~~ 89 (155)
T cd08690 80 LKFEVYHKGG 89 (155)
T ss_pred EEEEEEeCCC
Confidence 8899999976
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0023 Score=70.98 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=93.3
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCC----------CCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SPN 347 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e----------~~~ 347 (776)
....|.+.|+++.+++.....--.|-|+++.+- .++.+|.++++|.+|.|+|.|.+.+.... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 456788888898888764322234678887752 26789999999999999999999887522 123
Q ss_pred EEEEEEeecCCCC--CCceeEEEEecCcccCCCccceeeecCCCC---ceEEEEEEEEEec
Q 004056 348 VLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNIK---IGRLHLAITVLEE 403 (776)
Q Consensus 348 ~L~V~VyD~D~~~--Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~---~GeI~LsL~~~~~ 403 (776)
.+.|++|.+..+- |.++|.+.+.|.-|...-.....++|.+.. .|.|.+.+.+...
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEecc
Confidence 6999999998873 999999999999888776677788887642 7889888877643
|
|
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.002 Score=60.16 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
...|||+++++. ..++ +++||.+++++.||+||+.+.+.++..+.......+.+++.++.
T Consensus 34 ~~~dpyV~v~l~---~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~ 93 (123)
T cd08390 34 AHCDPFVKVCLL---PDER--RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF 93 (123)
T ss_pred CCCCcEEEEEEe---eCCC--CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC
Confidence 356999999883 2222 35789999999999999999888877666666678888888753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0079 Score=59.07 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=34.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..+|||+++++. ...++..++||.+.+++.||+||+.+.|+++
T Consensus 17 g~sDPYV~V~l~---~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~ 59 (148)
T cd04010 17 GTCDPYASVTLI---YSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59 (148)
T ss_pred CCCCceEEEEEe---CCcccCcccCCccEeCCCCCccceEEEEEEe
Confidence 468999999983 3344456789999999999999999988874
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0047 Score=57.87 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=41.7
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. .+. .+.||.+.+++.||+||+.+.+. .+..........+.+.+.+.
T Consensus 35 ~~~dpyv~v~~~~---~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 35 GTSDPFVKIYLLP---DKK--HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCCCceEEEEECC---CCC--cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 3579999998731 122 35799999999999999988775 34434444556777888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0091 Score=68.95 Aligned_cols=87 Identities=26% Similarity=0.462 Sum_probs=69.5
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCcceeeEEEeecc---CCCCCEEEEEEeecCCC
Q 004056 289 VEVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIST---WDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 289 V~VieA~~L~~~D~~G~sDPYVkv~Lg--~----~~~kTkvikkTlNP~WnEtF~f~V~~---~e~~~~L~V~VyD~D~~ 359 (776)
.-..+|++|.++|..+++|||..++-- . ..++|.++++++||.|-+ |.+.... .+....+.+.+||++..
T Consensus 140 ~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 140 QFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred eeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCC
Confidence 334568999999999999999987742 2 478999999999999965 4444332 22346799999999998
Q ss_pred C-CCceeEEEEecCcccC
Q 004056 360 V-DDTLGDCTINISDLRD 376 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~ 376 (776)
+ +++||++..++.++..
T Consensus 219 ~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE 236 (529)
T ss_pred CCcCceeEecccHHHhcc
Confidence 7 7999999999998864
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0093 Score=56.96 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=42.7
Q ss_pred ccCCCcccccccccCCCCc--ccccccceeecCCCceEEEecccccCCCCC--CCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNK--EDQSNKEDIRESFANETTDKGSFSSVSSEK--SPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gk--rlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~--~~~~~d~~~vi~~~ 469 (776)
...|||+++++..+ .+ ...++||.+.+++.||+||+.+.+.++... .......+.+++.+
T Consensus 35 g~~dPyv~v~l~~~---~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d 98 (133)
T cd04009 35 GSSDPFVKVELLPR---HLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYD 98 (133)
T ss_pred CCCCCEEEEEEECC---CcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecC
Confidence 35799999988422 21 245789999999999999998888775432 23445566777765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.02 Score=53.97 Aligned_cols=55 Identities=5% Similarity=0.040 Sum_probs=40.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC---CCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE---KSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~---~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. +.......+.+++.+
T Consensus 18 g~~dpYv~v~l~-----~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 18 GTNDAYVIIQLG-----K---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred cCCCceEEEEEC-----C---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 467999999872 1 357899999999999999888877652 234445567777776
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.013 Score=54.89 Aligned_cols=61 Identities=10% Similarity=0.064 Sum_probs=42.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. .......++||.+.+++.||+||+.+.+. ++..+.......+.+++.+.
T Consensus 34 ~~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~ 95 (123)
T cd04035 34 GLSDPYVKLNLL---PGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDR 95 (123)
T ss_pred CCCCceEEEEEe---cCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCC
Confidence 357999999883 33344567899999999999999887664 44334444455666676653
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.016 Score=54.89 Aligned_cols=65 Identities=5% Similarity=-0.160 Sum_probs=46.8
Q ss_pred EEEEEec-CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEe
Q 004056 397 AITVLEE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI 468 (776)
Q Consensus 397 sL~~~~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~ 468 (776)
.+++..+ +++..+|||+++.+. ..++...+.||.+.++++||+||+.+.+.++. .....+.+++.
T Consensus 2 ~V~V~~A~~L~~~sDPYV~l~v~---~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~ 67 (118)
T cd08686 2 NVIVHSAQGFKQSANLYCTLEVD---SFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEK 67 (118)
T ss_pred EEEEEeCCCCCCCCCCEEEEEEc---CccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEc
Confidence 3445555 566779999999773 22333457899999999999999998887752 33566777776
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.012 Score=65.86 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=59.7
Q ss_pred CceEEEEEEEEEec---------------CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC
Q 004056 390 KIGRLHLAITVLEE---------------SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE 454 (776)
Q Consensus 390 ~~GeI~LsL~~~~~---------------~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~ 454 (776)
.+|+|.|.+..... ..++.+|||+++.| ....+...|+||...+.++||+||+.+.+.|.+.
T Consensus 167 ~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kl---iPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~ 243 (683)
T KOG0696|consen 167 RRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKL---IPDPKNESKQKTKTIKATLNPVWNETFTFKLKPS 243 (683)
T ss_pred hcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEe---ccCCcchhhhhhhhhhhhcCccccceeEEecccc
Confidence 47877776654322 23456899999999 4566777889999999999999999999998654
Q ss_pred CCCCCCCceEEEEecCeeee
Q 004056 455 KSPKVADNFEPINIEGQQET 474 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~~~~ 474 (776)
+.. -...++++|.+.+...
T Consensus 244 Dkd-rRlsiEvWDWDrTsRN 262 (683)
T KOG0696|consen 244 DKD-RRLSIEVWDWDRTSRN 262 (683)
T ss_pred ccc-ceeEEEEecccccccc
Confidence 432 2346788888866555
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.13 Score=50.96 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=85.6
Q ss_pred CceeEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCcceeeEEEeeccCC------------C
Q 004056 282 EPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------S 345 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~--~G~sDPYVk--v~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e------------~ 345 (776)
+....|.++|..++-...--. .+..+.-.. +.+++|+|+|+.+..+.+|.|+|.|-|++.... .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 345678999988874432111 134444444 445789999999999999999999999988532 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCcc--ceeeecCC------CCceEEEEEEEEEec
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEE 403 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~--~~W~~L~~------~~~GeI~LsL~~~~~ 403 (776)
.+.+++.|.--|..+ ..++|...++-..+...+.. ..-+.|.+ ...|-|.++++.+|.
T Consensus 86 ~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred CCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 346888888877775 68889998888877655443 33344433 147889999988875
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=57.07 Aligned_cols=114 Identities=11% Similarity=0.211 Sum_probs=90.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC------CCCEEEEEEeecCCC-
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHF- 359 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e------~~~~L~V~VyD~D~~- 359 (776)
+.|+|++|+|.+... .-.-.+..++.+....|..+..+-.|.||.....++.... ....|++++|-.|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 678999999998762 2345777889999999999999999999998888765321 345799999999833
Q ss_pred C-CCceeEEEEecCcc---cCC--CccceeeecCCC------CceEEEEEEEEEec
Q 004056 360 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEE 403 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L---~~~--~~~~~W~~L~~~------~~GeI~LsL~~~~~ 403 (776)
+ .+.||.+.++|... ..+ .....|++|-+. ..-+|.+.+.....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~ 134 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD 134 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence 3 89999999999998 444 457899999764 25688888887765
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.038 Score=66.31 Aligned_cols=90 Identities=23% Similarity=0.357 Sum_probs=68.7
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeec-CCCCCcceee-EEEeeccCCCCCEEEEEEe
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvik-kTlNP~WnEt-F~f~V~~~e~~~~L~V~Vy 354 (776)
.+.+.|+|++|+-|..++. ..||.|.+-+ ..+||+++. +++||+|+|. |.|.-.-.+.-..|+|.||
T Consensus 702 A~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy 777 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY 777 (1189)
T ss_pred EeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence 3678999999999987663 4799998833 468898865 5899999974 7775221112347999999
Q ss_pred ecCCCCCCceeEEEEecCcccCCCcc
Q 004056 355 DKDHFVDDTLGDCTINISDLRDGQRH 380 (776)
Q Consensus 355 D~D~~~Dd~LG~v~I~L~~L~~~~~~ 380 (776)
+.. ..+||+-.+|+..|..|..+
T Consensus 778 eEg---gK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 778 EEG---GKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred ccC---CceeeeeccchhcccCccee
Confidence 864 57999999999999987643
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.28 Score=48.93 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=68.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeec
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~ 356 (776)
..++|+|+.+.++...+ .+|-||.+.+ +.+ ...|+.+.. .++.|||...|++. +......|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 35889999999987643 4688888865 442 224444433 67999999888765 333445799999997
Q ss_pred CCCC-----CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEE
Q 004056 357 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 357 D~~~-----Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
...+ ...+|.+.++|-+... .| ++|...|.+-.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~ 121 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWP 121 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEc
Confidence 6421 2469999999887442 12 26777777654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.26 Score=49.72 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=67.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeec
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDK 356 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~ 356 (776)
..++|+|+.+.+|...+ ...+-||.+.| |.+ ...|+.+.-+..+.|||.+.|++. +.+....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 35899999999998622 34566777654 543 345655554567999999998765 333445799999997
Q ss_pred CCCC-----------------CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEE
Q 004056 357 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 357 D~~~-----------------Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
.... +..||.+.++|-+... .| .+|...|.+-
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW 134 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMW 134 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEec
Confidence 5321 3578888888776432 12 2577666663
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.055 Score=49.81 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=48.9
Q ss_pred eEEEEEEEEEec-CC-CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC--CCCCCCCCCCceEEEE
Q 004056 392 GRLHLAITVLEE-SA-KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPIN 467 (776)
Q Consensus 392 GeI~LsL~~~~~-~~-k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L--p~~~~~~~~d~~~vi~ 467 (776)
|+..|++.+..+ ++ ....|||+++.+. + +++||.+++++.||+||+.+.+.+ +..+.......+.+++
T Consensus 2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLVGGNIDPVVKVEVG-----G---QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCCCCCCCCEEEEEEC-----C---EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 344566666665 22 3568999999883 2 257899999999999999887764 3333344566777888
Q ss_pred ecC
Q 004056 468 IEG 470 (776)
Q Consensus 468 ~~G 470 (776)
.+.
T Consensus 74 ~~~ 76 (111)
T cd04011 74 SRS 76 (111)
T ss_pred Ccc
Confidence 764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.091 Score=48.49 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=42.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCC-CCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~-~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ..++ .++||.+.+++.||+||+.+.+.+...+. ......+.+++.+.
T Consensus 21 ~~~Dpyv~v~~~---~~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 21 GSSDPYVTASFA---KFGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CCCCccEEEEEc---cCCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 468999999883 2232 35789999999999999988776544432 23456777888763
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.19 Score=48.03 Aligned_cols=86 Identities=13% Similarity=0.035 Sum_probs=50.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CC-C---CC--CCCCCceEEEEecCeeee---eE
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS-E---KS--PKVADNFEPINIEGQQET---GI 476 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~-~---~~--~~~~d~~~vi~~~G~~~~---gv 476 (776)
...|||+++.+. + .++||.+.+++.||+||+.+.+.. .. . .. ......+.+++.+..... |-
T Consensus 20 g~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~ 91 (135)
T cd04017 20 GLSDPFARVSFL-----N---QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGR 91 (135)
T ss_pred CCCCCEEEEEEC-----C---eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceE
Confidence 468999999872 2 367899999999999999876652 11 1 11 112345777887743222 33
Q ss_pred EEecCCcccccccccccCCCCCccceEeec
Q 004056 477 WVHQPGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 477 ~~~~pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
..-.|.......| ++.+.+||+..
T Consensus 92 ~~i~~~~~~~~~~------~~~~~~~W~~L 115 (135)
T cd04017 92 SVAKPLVKLDLEE------DFPPKLQWFPI 115 (135)
T ss_pred EEeeeeeecccCC------CCCCCceEEEe
Confidence 2112221111111 67788899865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.12 Score=48.91 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=39.6
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..|||+++.+. ..+....++||.+.+++.||.||+.+.+.+...+ ......+.+++.+
T Consensus 33 ~~dpyv~v~~~---~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~ 90 (131)
T cd04026 33 LSDPYVKLKLI---PDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWD 90 (131)
T ss_pred CCCCcEEEEEE---cCCCCCceecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECC
Confidence 57999998873 2222345689999999999999998887765332 1233455566665
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.079 Score=52.30 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=54.6
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE------
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW------ 477 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~------ 477 (776)
..+|||+++.+ .++ +.||.+.+++.||+||+.+.+.+.... ......+++++.+.. .+- |-.
T Consensus 33 ~~~DPYV~V~~-----~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~-~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 33 ELVDPYVEVSF-----AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPP-LCERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CCcCcEEEEEE-----CCE---eeecceEcCCCCCCcceEEEEEeeCCC-cCCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 35799999976 233 458999999999999999888653222 123456788887743 222 433
Q ss_pred EecCCcc-----cccccccccCCCCC
Q 004056 478 VHQPGSE-----VAQTWEPRKGKNRR 498 (776)
Q Consensus 478 ~~~pg~~-----~~~~W~~~~~~~r~ 498 (776)
+...+.+ ...+|-.+.+.||.
T Consensus 104 l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 104 ISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred hccCCccccCCccCceEEEeecCccc
Confidence 2233322 24799999999875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.056 Score=66.66 Aligned_cols=81 Identities=15% Similarity=0.072 Sum_probs=65.8
Q ss_pred ceEEEEEEEEEecC-------C--------CccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCC
Q 004056 391 IGRLHLAITVLEES-------A--------KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSE 454 (776)
Q Consensus 391 ~GeI~LsL~~~~~~-------~--------k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~ 454 (776)
.|+|.|+|+|.... . ....|||||.+| ....++..|+||.+.++|.||+||+.-.++ .|.+
T Consensus 1512 ggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YL---lPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~ 1588 (1639)
T KOG0905|consen 1512 GGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYL---LPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKE 1588 (1639)
T ss_pred CceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEe---cCCchHhhhhhhccccccCCCchhhheeecCCchh
Confidence 57999999997542 1 123689999999 577888899999999999999999988877 7777
Q ss_pred CCCCCCCceEEEEecCeeee
Q 004056 455 KSPKVADNFEPINIEGQQET 474 (776)
Q Consensus 455 ~~~~~~d~~~vi~~~G~~~~ 474 (776)
..+.-...+.|+..+|--++
T Consensus 1589 ~l~qReLQ~sVls~~~~~en 1608 (1639)
T KOG0905|consen 1589 ILQQRELQVSVLSNGGLLEN 1608 (1639)
T ss_pred hhhhheeeeeeecccceeee
Confidence 77777778888888776665
|
|
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.14 Score=47.16 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=49.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee-eeEE---Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE-TGIW---VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~-~gv~---~~--~ 480 (776)
..+|||+++.+. ++ ++.||.++++ .||.||+.+.+.++..+.......+.+++.++... .++. +. .
T Consensus 16 ~~~dpyv~v~~~-----~~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 16 GTRDPYCTVSLD-----QV--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCCceEEEEEC-----CE--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 468999999872 22 2467888888 99999999888876544333333344444432222 2222 22 2
Q ss_pred CCcccccccccccCCC
Q 004056 481 PGSEVAQTWEPRKGKN 496 (776)
Q Consensus 481 pg~~~~~~W~~~~~~~ 496 (776)
. ++...+|-++.++.
T Consensus 88 ~-~~~~~~w~~L~~~~ 102 (117)
T cd08383 88 L-GQGKDEWFPLTPVD 102 (117)
T ss_pred C-CCcceeEEECccCC
Confidence 2 23458898887654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.32 Score=45.94 Aligned_cols=85 Identities=8% Similarity=-0.050 Sum_probs=51.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCee--ee-eEE-EecCC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ--ET-GIW-VHQPG 482 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~--~~-gv~-~~~pg 482 (776)
..+|||+++.+. +++ .++||.+.+++.||+||+.+.+.+... ......+.+++.+... +- |-. +.-..
T Consensus 19 g~~DPYv~v~~~-----~~~-~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 90 (124)
T cd04037 19 GKSDPYLKIKLG-----KKK-INDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLLGSDDLIGETVIDLED 90 (124)
T ss_pred CCCCcEEEEEEC-----Cee-ccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCCCCCceeEEEEEeecc
Confidence 468999999872 222 346777778899999998777654221 2334577788876332 22 433 22222
Q ss_pred cccccccccccCCCCCc
Q 004056 483 SEVAQTWEPRKGKNRRL 499 (776)
Q Consensus 483 ~~~~~~W~~~~~~~r~~ 499 (776)
-.-..||..+.-.+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~ 107 (124)
T cd04037 91 RFFSKHRATCGLPPTYE 107 (124)
T ss_pred cccchHHHhccCCCccc
Confidence 12247787777766544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.2 Score=48.00 Aligned_cols=53 Identities=11% Similarity=-0.002 Sum_probs=39.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+.+.+ ++ ++.||.+.+++.||+||+.+.+.+.. ......+.+++.+.
T Consensus 22 g~sDPYv~i~~-----g~---~~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~ 74 (126)
T cd08379 22 GSTDAYCVAKY-----GP---KWVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQ 74 (126)
T ss_pred CCCCeeEEEEE-----CC---EEeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEECCC
Confidence 57899999976 22 24678888999999999998887642 12367788888764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.64 Score=45.73 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=60.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD~D 357 (776)
.++|++....++...+ ....+-||.+.+ +.+ ...|+......++.|||...|++. +......|.|.||+.+
T Consensus 9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 4677788887776521 234566777655 442 234444443468999999988865 3334457999999987
Q ss_pred CCC---CCceeEEEEecCccc
Q 004056 358 HFV---DDTLGDCTINISDLR 375 (776)
Q Consensus 358 ~~~---Dd~LG~v~I~L~~L~ 375 (776)
..+ +..||.+.++|-+..
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred cCCCCcceEEEEEeEEeEccc
Confidence 653 589999999988754
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.14 Score=48.19 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=40.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-CCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-KSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. ........+.+++.+.
T Consensus 19 g~~dpyv~v~~~-----~---~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 19 GSSSAYVELDFD-----G---QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CCcCcEEEEEEC-----C---EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 467999999873 2 257899999999999999988877532 2333455677777653
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=91.99 E-value=2.3 Score=40.70 Aligned_cols=116 Identities=20% Similarity=0.292 Sum_probs=78.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeec-CCCCCcceeeEEEeeccC---C----CCCEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQR-KTLSPKWHEEFNIPISTW---D----SPNVLVIE 352 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~---~~kTkvik-kTlNP~WnEtF~f~V~~~---e----~~~~L~V~ 352 (776)
.-.+.|+|.+..+++. ...--||+...+.. ..+|.... .+-.-.|||+|.+.+.-. . ....+.|.
T Consensus 6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 4467889999998886 22345666666653 34554433 344579999998876521 1 23479999
Q ss_pred EeecCCCCC-CceeEEEEecCcccCC--CccceeeecCCC--CceEEEEEEEEEec
Q 004056 353 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEE 403 (776)
Q Consensus 353 VyD~D~~~D-d~LG~v~I~L~~L~~~--~~~~~W~~L~~~--~~GeI~LsL~~~~~ 403 (776)
|+.....+. ..+|.+.++|+++... .....-+.|... ....|+++|.+...
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSEL 137 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEEC
Confidence 998864443 5999999999999874 345566777654 35678888887764
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.26 Score=47.87 Aligned_cols=56 Identities=13% Similarity=-0.051 Sum_probs=39.7
Q ss_pred ccCCCcccccccccCCCCcc--------cccccceeecCCCceEE-EecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKE--------DQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkr--------lkKKKT~vkk~t~nP~~-n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ...+. .+++||.+.+++.||+| |+.+.+.++.. ....+++++.+
T Consensus 19 g~~DPyvki~~~---~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~ 83 (137)
T cd08691 19 FNPDPYVKISIQ---PGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKF 83 (137)
T ss_pred CCCCceEEEEEE---CCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecC
Confidence 357999999883 22222 24789999999999999 88888776432 24567777754
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.21 Score=46.24 Aligned_cols=54 Identities=9% Similarity=0.013 Sum_probs=39.5
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+. + ++.||.+.+++.||+||+.+.+.+.... ......+.+++.+.
T Consensus 25 ~~DPYv~v~~~-----~---~~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~ 78 (108)
T cd04039 25 DMDPFVIISFG-----R---RVFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDK 78 (108)
T ss_pred ccCceEEEEEC-----C---EeEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCC
Confidence 37999998771 1 3568999999999999998877764333 23455678888873
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.28 Score=47.03 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=39.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++ .++ ++||.+.+++.||+||+.+.+.+... .......+.+++.+.
T Consensus 46 g~~DPYVkV~~-----~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~ 100 (127)
T cd04032 46 TSTDGYVKVFF-----GGQ---EKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDN 100 (127)
T ss_pred CCCCeEEEEEE-----CCc---cccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCC
Confidence 35799999977 232 68999999999999998877653111 134456778888763
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.23 Score=46.84 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=50.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eEE-Ee---
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GIW-VH--- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv~-~~--- 479 (776)
..+|||+++.+. ++ +++||.+++++.||+||+.+.+.++... ....+.+++.+..... |.. +.
T Consensus 20 g~sDpYv~v~l~-----~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~~---~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 89 (121)
T cd08401 20 KMRDCYCTVNLD-----QE--EVFRTKTVEKSLCPFFGEDFYFEIPRTF---RHLSFYIYDRDVLRRDSVIGKVAIKKED 89 (121)
T ss_pred CCcCcEEEEEEC-----Cc--cEEEeeEEECCCCCccCCeEEEEcCCCC---CEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 357999999872 11 3478889999999999999988886431 3556667776643222 433 21
Q ss_pred cCCcccccccccccC
Q 004056 480 QPGSEVAQTWEPRKG 494 (776)
Q Consensus 480 ~pg~~~~~~W~~~~~ 494 (776)
....+....|.++..
T Consensus 90 l~~~~~~~~w~~L~~ 104 (121)
T cd08401 90 LHKYYGKDTWFPLQP 104 (121)
T ss_pred ccCCCCcEeeEEEEc
Confidence 122233477877754
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=91.48 E-value=0.25 Score=45.92 Aligned_cols=58 Identities=9% Similarity=-0.055 Sum_probs=40.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
...|||+++.+. ..+ ..++||.+.+++.||+||+.+.+.++... .....+.+++.+..
T Consensus 19 ~~~Dpyv~v~~~---~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~ 76 (119)
T cd04036 19 STPDCYVELWLP---TAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV 76 (119)
T ss_pred CCCCcEEEEEEc---CCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC
Confidence 457999998872 111 24678999999999999998887765432 22346777776643
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.41 E-value=0.37 Score=52.37 Aligned_cols=118 Identities=12% Similarity=0.016 Sum_probs=77.3
Q ss_pred ecCceeEEEEEEEEecCCCCCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 280 VKEPVAYARVEVVEASDMKPSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 280 y~~~~GvL~V~VieA~~L~~~D--~~G~sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
...-.|.|.+++.+++||.-.. .+-+-+-||.+.... .+.||.+.....-=.|.|+|...+.+ ...|.+-||.+
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvySW 122 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYSW 122 (442)
T ss_pred eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEeec
Confidence 3456799999999999997543 245678899988765 45566666566666899999998875 35799999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
+... +++.-.-.+.+..+.. +.-+.-+.|.-..+|++-+++.+.
T Consensus 123 ~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 123 PPQRRHKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPLA 167 (442)
T ss_pred Cchhhccccccchhhhhhhhh-cCCcceeeeecccCCCCceecccC
Confidence 8865 6543222333333332 222323333333478777776543
|
|
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.18 Score=46.38 Aligned_cols=56 Identities=9% Similarity=0.001 Sum_probs=43.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEE-EecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~-n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. + .++||.+.+++.||+| |+.+.+.++..+.......+.+++.+.
T Consensus 19 ~~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~ 75 (110)
T cd08688 19 DLTDAFVEVKFG-----S---TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT 75 (110)
T ss_pred CCCCceEEEEEC-----C---eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC
Confidence 457999999872 2 4688999999999999 888878777665555566777887763
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=91.05 E-value=0.22 Score=46.47 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCC-CcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMG-NKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~-gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++++... . ++...++||.+.+++.||+||+.+.+.+..+.. ....+++++++
T Consensus 19 g~~DPyv~v~~~~~--~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d 78 (120)
T cd04048 19 SKSDPFVVVYVKTG--GSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVD 78 (120)
T ss_pred CCCCcEEEEEEEcC--CCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEec
Confidence 45799999988422 1 244567899999999999999877765433222 23456677765
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.43 Score=45.08 Aligned_cols=59 Identities=20% Similarity=0.142 Sum_probs=40.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+... ..++...++||.+.+++.||+||+.+.+.++... ....+.+++.+
T Consensus 19 ~~~Dpyv~v~~~~~-~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~l~~~v~d~~ 77 (133)
T cd04033 19 GASDPYVKISLYDP-DGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE---HRLLFEVFDEN 77 (133)
T ss_pred CCcCcEEEEEEECC-CCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC---CEEEEEEEECC
Confidence 45799999988421 1233455679999999999999998877765421 23456667665
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.32 Score=45.50 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=39.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++++. + .+.||.+.+++.||.||+.+.+.++... .....+.+++.+
T Consensus 19 ~~~DPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~ 71 (123)
T cd04025 19 GTSDPFVRVFYN-----G---QTLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWD 71 (123)
T ss_pred CCcCceEEEEEC-----C---EEEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECC
Confidence 357999999872 2 2468999999999999998888775433 344567777765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.41 Score=45.33 Aligned_cols=89 Identities=19% Similarity=0.176 Sum_probs=49.7
Q ss_pred EEEEEEec-C--CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe-
Q 004056 396 LAITVLEE-S--AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ- 471 (776)
Q Consensus 396 LsL~~~~~-~--~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~- 471 (776)
|.+.+..+ + .+..+|||+++.+. +. ++.||.++ ++.||+||+.+.+........ ...+.+++.+..
T Consensus 6 L~V~Vi~A~~L~~~~~~DPYv~v~l~-----~~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~~~ 75 (126)
T cd08400 6 LQLNVLEAHKLPVKHVPHPYCVISLN-----EV--KVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAKRS 75 (126)
T ss_pred EEEEEEEeeCCCCCCCCCeeEEEEEC-----CE--eEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECCCCC
Confidence 44444544 2 23467999999882 21 23567764 579999999888764332222 223455554422
Q ss_pred -eee-eEE-Ee----cCCcccccccccccCC
Q 004056 472 -QET-GIW-VH----QPGSEVAQTWEPRKGK 495 (776)
Q Consensus 472 -~~~-gv~-~~----~pg~~~~~~W~~~~~~ 495 (776)
.+. |.. +. .+| ++..+|-++.+.
T Consensus 76 ~d~~iG~v~i~l~~l~~~-~~~~~W~~L~~~ 105 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNG-QETDEWYPLSSA 105 (126)
T ss_pred CCCeEEEEEEEHhHccCC-CcccEeEEcccC
Confidence 121 433 22 343 345788888764
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.53 Score=44.26 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=41.5
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
....|||+++++. + .++||.+.+++.||+||+.+.+.+...........+.+++.+.
T Consensus 12 ~g~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~ 68 (127)
T cd08373 12 KGKGDRIAKVTFR-----G---VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEK 68 (127)
T ss_pred CCCCCCEEEEEEC-----C---EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCC
Confidence 3468999999872 2 2578999999999999998887764332344556777787764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.97 E-value=1 Score=44.95 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=57.7
Q ss_pred CCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecCCCC-CCceeEEEEecCcc
Q 004056 304 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 374 (776)
Q Consensus 304 G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L 374 (776)
..+|-||.+.+ +.+ ..+|..+.-+..+.|||...|+|.- ......|.|+|||.+..+ ...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 34677777765 332 2355555545678999998888763 333457999999987664 77999999998875
Q ss_pred cCCCccceeeecCCCCceEEEEEEE
Q 004056 375 RDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 375 ~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
.. + | ++|...+.+-
T Consensus 108 ~g------~--L---r~G~~~l~lw 121 (159)
T cd08397 108 DG------T--L---RRGRQKLRVW 121 (159)
T ss_pred CC------c--E---ecCCEEEEEE
Confidence 31 1 2 3677777764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.42 Score=47.30 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec--CeeeeeEE-E--e
Q 004056 405 AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQETGIW-V--H 479 (776)
Q Consensus 405 ~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~gv~-~--~ 479 (776)
....+|||+++.+. +. +..||.+.+++.||+||+.+.+.++.. .....+.+.+.+ |...-|.. + .
T Consensus 54 ~~g~sDPYv~V~l~-----~~--~~~rT~v~~~~~nP~WnE~F~~~~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~ 123 (158)
T cd04015 54 GKITSDPYATVDLA-----GA--RVARTRVIENSENPVWNESFHIYCAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVE 123 (158)
T ss_pred CCCCcCeEEEEEEC-----Ce--EeeEEEEeCCCCCCccceEEEEEccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhH
Confidence 34568999999872 22 235888889999999999877655422 123456666654 22222433 1 1
Q ss_pred c-CCcccccccccccCCCCCc
Q 004056 480 Q-PGSEVAQTWEPRKGKNRRL 499 (776)
Q Consensus 480 ~-pg~~~~~~W~~~~~~~r~~ 499 (776)
. ..++...+|-++.+..++|
T Consensus 124 ~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 124 DLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred HccCCCCcceEEECcCCCCCC
Confidence 1 1233457898887765544
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.5 Score=43.56 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=39.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. + .+.||.+.+++.||+||+.+.+.+... ......+.+++.+.
T Consensus 19 ~~~dPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~ 72 (116)
T cd08376 19 GLSDPYVKFRLG-----N---EKYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDT 72 (116)
T ss_pred CCCCcEEEEEEC-----C---EeEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCC
Confidence 457999999872 2 357889999999999999877766533 23345666777664
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=89.65 E-value=0.58 Score=45.84 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=39.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. ..+..+.+++.+
T Consensus 20 ~~sDPYV~v~~g-----~---~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 20 TSSDPYVVLTLG-----N---QKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred CCcCcEEEEEEC-----C---EEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECC
Confidence 468999998772 2 368899999999999999887776532 344567777766
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.56 Score=42.71 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=39.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. + +++||.+.+++.||+||+.+.+.+..... ....+.+++.+.
T Consensus 19 ~~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~--~~l~v~v~d~~~ 72 (105)
T cd04050 19 KEPSPYVELTVG-----K---TTQKSKVKERTNNPVWEEGFTFLVRNPEN--QELEIEVKDDKT 72 (105)
T ss_pred CCCCcEEEEEEC-----C---EEEeCccccCCCCCcccceEEEEeCCCCC--CEEEEEEEECCC
Confidence 468999999872 2 46788899999999999988887754322 234566666654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.68 Score=43.91 Aligned_cols=77 Identities=8% Similarity=0.039 Sum_probs=48.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee---
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--- 479 (776)
...|||+++.+. +++ ..||.+++++.||.||+.+-+.++ ......+++++.+. ..+- |.+ +.
T Consensus 33 g~~dpyv~v~~~-----~~~--~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 33 QLLDPYVSIDVD-----DTH--IGKTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred cCcCcEEEEEEC-----CEE--EeEEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 357999999872 322 357888888999999998887775 22345566666542 1122 443 22
Q ss_pred -cC-CcccccccccccC
Q 004056 480 -QP-GSEVAQTWEPRKG 494 (776)
Q Consensus 480 -~p-g~~~~~~W~~~~~ 494 (776)
.. +++....|.++..
T Consensus 102 l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 102 LIQRGSGSFDLWVDLEP 118 (132)
T ss_pred hcccCCCcccEEEEccC
Confidence 23 2455688888863
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.27 Score=46.31 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=41.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
..+|||+++.+. + ..+++||.+.+++.||+||+.+.+.+... .....+.+++.+..
T Consensus 16 g~~dpyv~v~~~-----~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 16 GSSNPYCVLEMD-----E-PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CCcCCEEEEEEC-----C-CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCC
Confidence 468999999872 1 12457999999999999999888877432 23456777777654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.3 Score=44.44 Aligned_cols=104 Identities=23% Similarity=0.318 Sum_probs=69.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeec--C--CCCCcceeeEEEeec--cCCCCCEEEEE
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQR--K--TLSPKWHEEFNIPIS--TWDSPNVLVIE 352 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvik--k--TlNP~WnEtF~f~V~--~~e~~~~L~V~ 352 (776)
..+.|+|..+.+++........|-||.+.| +.+ ...|+... + ...+.|||...|++. +......|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 458899999999988664456788888765 443 23444321 1 235789999888875 22334579999
Q ss_pred EeecCCCC----------CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEE
Q 004056 353 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 399 (776)
Q Consensus 353 VyD~D~~~----------Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~ 399 (776)
+|+....+ +..||.+.++|-+... .| .+|...|.+-
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW 133 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLW 133 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEec
Confidence 99976543 4689999998876432 12 2577777664
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=89.23 E-value=3.1 Score=37.95 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=58.9
Q ss_pred CCcEEEEEeCC-eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCceeEEEEecCcccCCCccceee
Q 004056 306 ADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWI 384 (776)
Q Consensus 306 sDPYVkv~Lg~-~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~ 384 (776)
++-.+.+.+.+ ...+|.-... .+..|++.|.|.+.. .+.|.|.||-+|. ..+-|-..+.|.+. .+..-+
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~----~~~~~~ 78 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDE----RHEVQL 78 (98)
T ss_pred cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhh----ccccee
Confidence 67788888877 5666665433 478999999999874 5789999998876 34556666777763 233445
Q ss_pred ecCCCCceEEEEEEEE
Q 004056 385 PLQNIKIGRLHLAITV 400 (776)
Q Consensus 385 ~L~~~~~GeI~LsL~~ 400 (776)
+|+ .+|.+...++|
T Consensus 79 ~le--pqg~l~~ev~f 92 (98)
T cd08687 79 DME--PQLCLVAELTF 92 (98)
T ss_pred ccc--cccEEEEEEEe
Confidence 555 37888777776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.11 E-value=3.3 Score=42.16 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=44.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD 357 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~---~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D 357 (776)
.++|+|..+.. +..+......-||.+.| +.+ ..+|....-+.+|.|||...|++.- ......|.|.||+..
T Consensus 11 ~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 46777877763 33222222335666544 432 2356665567789999998888663 333457999999973
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=88.95 E-value=0.43 Score=43.60 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=39.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCC----CCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS----PKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~----~~~~d~~~vi~~~G 470 (776)
..+|||+++++..+ .++...++||.+.+++.||+|| .+ .++.... ......+.+++++.
T Consensus 19 ~~~DPyv~v~~~~~--~~~~~~~~kT~vi~~t~nP~Wn-~f--~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 19 GKSDPFLEISRQSE--DGTWVLVYRTEVIKNTLNPVWK-PF--TIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred CCCCeeEEEEEECC--CCCEEEEEeeeEeccCCCCceE-EE--EEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 46899999987422 2244567899999999999999 32 2322221 13456788888864
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.53 Score=44.32 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=39.0
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
.+|||+++.+. + .++||.+.+++.||+||+.+.+.+.. .......+.+++.+.
T Consensus 16 ~~Dpyv~v~l~-----~---~~~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~ 68 (121)
T cd08378 16 SNDPVVEVKLG-----N---YKGSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDK 68 (121)
T ss_pred cCCCEEEEEEC-----C---ccccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCC
Confidence 68999999873 1 36789999999999999988776532 233445677777654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.63 Score=43.01 Aligned_cols=78 Identities=9% Similarity=-0.005 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceee-cCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee--eEE-E--ec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-V--HQ 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vk-k~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~--gv~-~--~~ 480 (776)
..+|||+++.+. + .++||.+. +++.||+||+.+.+.++.. ......+.+++.+...+. |-. + ..
T Consensus 20 ~~~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~~~~iG~~~~~l~~ 89 (118)
T cd08681 20 DKQDPYCVLRIG-----G---VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDKRKPDLIGDTEVDLSP 89 (118)
T ss_pred CCCCceEEEEEC-----C---CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCCCCCcceEEEEEecHH
Confidence 357999999872 2 34667665 4579999999888877643 223456777777643222 433 1 11
Q ss_pred -CCcccccccccccC
Q 004056 481 -PGSEVAQTWEPRKG 494 (776)
Q Consensus 481 -pg~~~~~~W~~~~~ 494 (776)
.......+|-++..
T Consensus 90 ~~~~~~~~~w~~L~~ 104 (118)
T cd08681 90 ALKEGEFDDWYELTL 104 (118)
T ss_pred HhhcCCCCCcEEecc
Confidence 11223467776654
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=88.46 E-value=1.1 Score=41.79 Aligned_cols=55 Identities=13% Similarity=-0.040 Sum_probs=38.2
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
....|||+++.+. + .+.||.+.+++.||.||+.+.+.+.. .......+.+++.+.
T Consensus 21 ~~~~dPyv~v~~~-----~---~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~ 75 (128)
T cd04024 21 KGKSDPYAILSVG-----A---QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDR 75 (128)
T ss_pred CCCcCCeEEEEEC-----C---EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCC
Confidence 3467999988762 1 35789999999999999877665543 233445666676653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.65 Score=44.76 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=37.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. + .+.||.+.+++.||+||+.+.+.+.. .......+.+++.+
T Consensus 34 g~~DPYv~v~~~-----~---~~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d 86 (136)
T cd08375 34 GKSDPYCEVSMG-----S---QEHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRD 86 (136)
T ss_pred CCcCcEEEEEEC-----C---EeeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECC
Confidence 468999998872 1 35789999999999999987776532 22234456677765
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.99 Score=42.29 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=37.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+ .++ +..||.+.+++.||+||+.+.+.++.. .....+.+++.+
T Consensus 19 g~~DPYv~v~~-----~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~ 71 (121)
T cd04054 19 GSSDPYCIVKV-----DNE--VIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDED 71 (121)
T ss_pred CCCCceEEEEE-----CCE--eeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECC
Confidence 45799999876 222 236888889999999999888776432 134456666665
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.71 Score=43.86 Aligned_cols=77 Identities=14% Similarity=0.078 Sum_probs=48.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecC-CCceEEEecccccCCCCCCCCCCCceEEEEec--Ceeee-eEE-Ee--
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIE--GQQET-GIW-VH-- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~-t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~--G~~~~-gv~-~~-- 479 (776)
..+|||+++.+ ++ .+.||.+.++ +.||+||+.+.+.++.. .....+++++.+ +..+- |-. +.
T Consensus 20 g~sDPYv~i~l-----g~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~ 88 (121)
T cd04016 20 TRMDPYCRIRV-----GH---AVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFTMDERIAWTHITIP 88 (121)
T ss_pred CCCCceEEEEE-----CC---EEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCcCCceEEEEEEECc
Confidence 46899999987 22 2357777655 79999999988877542 234567777776 22222 322 21
Q ss_pred ---cCCcccccccccccCC
Q 004056 480 ---QPGSEVAQTWEPRKGK 495 (776)
Q Consensus 480 ---~pg~~~~~~W~~~~~~ 495 (776)
.+| .....|-++.++
T Consensus 89 ~~~~~g-~~~~~W~~L~~~ 106 (121)
T cd04016 89 ESVFNG-ETLDDWYSLSGK 106 (121)
T ss_pred hhccCC-CCccccEeCcCc
Confidence 233 335888887663
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=87.82 E-value=0.83 Score=42.70 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=38.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ++ ..++.||.+.+++.||.||+.+.+.++.. ......+.+++.+
T Consensus 20 ~~~Dpyv~v~~~----~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d 75 (126)
T cd04043 20 GLSDPYVTLVDT----NG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRS 75 (126)
T ss_pred CCCCceEEEEEC----CC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECC
Confidence 467999998752 11 12357888999999999999888776543 2234456667665
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=86.60 E-value=0.81 Score=44.13 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=41.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCC-------------CCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE-------------KSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~-------------~~~~~~d~~~vi~~~G 470 (776)
...|||+++++.. . .+..++||.+.+++.||+||+.+.+.+... +.......+.+++.+.
T Consensus 17 g~~dPyv~v~~~~---~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~ 89 (137)
T cd08675 17 GTCDPFARVTLNY---S-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASM 89 (137)
T ss_pred CCCCcEEEEEEec---C-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCc
Confidence 4579999998842 1 223468999999999999999887776433 2244455666666653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.92 Score=42.64 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=39.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++++. + ..++||.+.+++.||.||+.+.+.++. .....+.+++.+
T Consensus 19 ~~~dpyv~v~~~-----~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~ 70 (123)
T cd08382 19 RLPDPFAVITVD-----G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQK 70 (123)
T ss_pred CCCCcEEEEEEC-----C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECC
Confidence 357999998872 2 245789999999999999887777653 345667777765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=86.12 E-value=1 Score=42.02 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=38.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+ +++ ...||.+.+++.||+||+.+.+.+.. . .....+.+++.+.
T Consensus 19 g~~Dpyv~v~~-----~~~--~~~kT~~~~~t~nP~Wne~f~f~v~~--~-~~~l~~~v~D~d~ 72 (121)
T cd04042 19 GTSDPYVKFKY-----GGK--TVYKSKTIYKNLNPVWDEKFTLPIED--V-TQPLYIKVFDYDR 72 (121)
T ss_pred CCCCCeEEEEE-----CCE--EEEEeeeccCCCCCccceeEEEEecC--C-CCeEEEEEEeCCC
Confidence 46899999876 232 34678888899999999887776532 1 2346677777764
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=84.69 E-value=1.9 Score=40.73 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=37.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++... + .+.||.+.+++.||+||+.+.+.... ......+.+++.+
T Consensus 22 g~~dPyv~v~~~-----~---~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~ 73 (126)
T cd04046 22 GGADPYVIIKCE-----G---ESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSN 73 (126)
T ss_pred CCcCccEEEEEC-----C---EEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECC
Confidence 468999998762 2 24789999999999999987665431 2344567777765
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >KOG3532 consensus Predicted protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.42 E-value=2.7 Score=49.99 Aligned_cols=186 Identities=16% Similarity=0.131 Sum_probs=110.3
Q ss_pred cceeeeeeeecCCCCCEEeeEEEEecCCC----------C-------------CeEEEEEEEEEeeCCCcchheehhhhh
Q 004056 115 AKKALVQHLYLGRNPPMLTEMRVLRQSND----------D-------------DHMVLELGMNFLTADDMSAILAVKLRK 171 (776)
Q Consensus 115 i~~l~~~~ftLGs~PPrI~~Vrv~~~~~~----------~-------------d~vilDldis~~~~~D~si~l~v~l~~ 171 (776)
+..+.+.++-||.+-|.+++.+++.-+.. + .-+.+=+++.|.|..--++... +
T Consensus 146 L~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~--s-- 221 (1051)
T KOG3532|consen 146 LQEIRIRELELGTKFMTINSLRVHSVENLSEFLKYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVS--T-- 221 (1051)
T ss_pred hcccceehhhhccccccccceEEeecccHHHHHHhhhhhhhhcccCCcceecccccccccccccCCCcceecCCc--c--
Confidence 55677999999999999999999741110 0 1123344566654221111111 1
Q ss_pred hcCcceeEEEEEEEEEEEEEEEEEEeeccCCCccceeeEEEeCCceEEEEEeeccccCCccccCcchHHHHHHHHHHHhh
Q 004056 172 RLGFGMWAKMHVTGMHVEGKVLVGVKFLRRWPFIDRLRVCFAEPPYFQMTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFE 251 (776)
Q Consensus 172 rlG~G~~~~i~V~~l~~~G~lRV~L~L~~~~P~vg~v~vsFle~P~idf~lkpl~~~G~dV~~iPgLs~~I~~~I~~~l~ 251 (776)
-++.| ..+.|+-.+++|.+|+.+.-.+. - .-+++|+..|.+..+++.- ..++-| .--|.+.|...++.++.
T Consensus 222 ~~~kk--~S~~iKl~~l~Gm~r~~~~r~py-~---hw~~sf~G~P~~e~di~s~--~qg~qL-Q~~I~q~i~~~ir~~~~ 292 (1051)
T KOG3532|consen 222 IIAKK--ASLSVKITKLTGMVRVILSRQPY-H---HWTFSFVGQPIFETDINSQ--IQGHQL-QRLIPQIIKEAIRRSLQ 292 (1051)
T ss_pred ccccC--CceeEEEEEeccceeEEEEeccc-e---eeeeeeccCchhhhhhHHH--HHHHHH-HHHhHHHHHHHHHHHHH
Confidence 11112 24556778999999998753332 2 2378999999877766422 111111 11245566777777888
Q ss_pred hcccCCceeeecccccCC-CC--C-CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC
Q 004056 252 QTLVEPNMLVVDVDKFAS-PQ--P-GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP 316 (776)
Q Consensus 252 ~~LV~Pn~l~Idl~~~~s-~~--~-~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~ 316 (776)
....|||+. +.+-.++- +. . +.--++..-.+.|.+.|++.++..|.. .++...-||.+.+.+
T Consensus 293 rKhT~pnyK-~ry~pff~~~~~~a~~~~~s~~~i~~~G~~~V~~lE~srL~~--~~k~~e~Yct~T~e~ 358 (1051)
T KOG3532|consen 293 RKHTWPNYK-IRYRPFFPNPIFQASPPINSFTHIKMEGGIEVTVLECSRLKD--KNKNYEVYCTVTIES 358 (1051)
T ss_pred hhccCcchh-hhccccccCcccccCcchhhhhheeccCceeEeehhhhhhhc--cCCccceeeeccccC
Confidence 889999853 22222221 11 1 000112224467999999999988854 567888999999865
|
|
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=1.7 Score=43.66 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=38.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.++|||+.+.+ ++ ++-||.+.++..||+||+.+.+.++- ...+..+.|+|.|
T Consensus 25 ~sSDPyVVl~l-----g~---q~lkT~~v~~n~NPeWNe~ltf~v~d---~~~~lkv~VyD~D 76 (168)
T KOG1030|consen 25 GSSDPYVVLEL-----GN---QKLKTRVVYKNLNPEWNEELTFTVKD---PNTPLKVTVYDKD 76 (168)
T ss_pred cCCCCeEEEEE-----CC---eeeeeeeecCCCCCcccceEEEEecC---CCceEEEEEEeCC
Confidence 57899999877 23 35677789999999999988886642 2345566777776
|
|
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=83.82 E-value=1.7 Score=43.10 Aligned_cols=39 Identities=5% Similarity=-0.024 Sum_probs=28.2
Q ss_pred cccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 429 SNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 429 KKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.+||.+.+++.||+||+.+.+.+.. .......+.+++.+
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~v~~--~~~~~L~i~V~D~d 128 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFEVED--VSNDQLHLDIWDHD 128 (153)
T ss_pred cEecceecCCCCCccccEEEEEecc--CCCCEEEEEEEecC
Confidence 3689999999999999887776632 22345567777775
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=83.67 E-value=1.3 Score=43.47 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=35.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecC-CCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~-t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+. + ++.||.+.++ +.||+||+.+.+.++.. ......+.+.+.++
T Consensus 19 g~sDPYV~v~l~-----~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~--~~~~l~v~V~d~~~ 73 (150)
T cd04019 19 RVPEVFVKAQLG-----N---QVLRTRPSQTRNGNPSWNEELMFVAAEP--FEDHLILSVEDRVG 73 (150)
T ss_pred CCCCeEEEEEEC-----C---EEeeeEeccCCCCCCcccCcEEEEecCc--cCCeEEEEEEEecC
Confidence 468999999882 2 2456666655 69999999887766421 12344566666654
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=82.81 E-value=2.2 Score=39.50 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=38.4
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+.. . .+++||.+.+++.||.||+.+.+.+. .......+.+++.+.
T Consensus 23 ~~dpyv~v~~~~-----~-~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 23 TVDPYVTFSISN-----R-RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred CCCCeEEEEECC-----C-CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 479999998731 1 35688999999999999988776654 123345666777653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=82.79 E-value=4.2 Score=39.35 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=47.1
Q ss_pred EeeeecCC-CCCcceeeEEEeec--cCCCCCEEEEEEeecCCCC-C----CceeEEEEecCcccCCCccceeeecCCCCc
Q 004056 320 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (776)
Q Consensus 320 kTkvikkT-lNP~WnEtF~f~V~--~~e~~~~L~V~VyD~D~~~-D----d~LG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (776)
.|+...-+ .++.|||...|++. +......|.|.||..+... . ..||.+.++|-+... .| .+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~ 91 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ 91 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence 56655555 79999998888765 4444568999999988776 3 699999999887532 11 26
Q ss_pred eEEEEEE
Q 004056 392 GRLHLAI 398 (776)
Q Consensus 392 GeI~LsL 398 (776)
|...|.+
T Consensus 92 G~~~L~l 98 (142)
T PF00792_consen 92 GPQKLSL 98 (142)
T ss_dssp EEEEEE-
T ss_pred CCEEEEE
Confidence 8887777
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=82.75 E-value=1.9 Score=40.80 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=36.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. + .+.||.+.+++.||.||+.+.+.+... .....+.+++.+
T Consensus 20 g~~DPyv~v~~~-----~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d 71 (127)
T cd04027 20 GTSDPYVTVQVG-----K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDED 71 (127)
T ss_pred CCcCcEEEEEEC-----C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECC
Confidence 457999998772 1 246888889999999998877654311 224556677765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=82.31 E-value=1.6 Score=53.51 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=60.6
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee--eEE-Ee---
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-VH--- 479 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~--gv~-~~--- 479 (776)
..++|||+++.+- ++ ++.||.+.+++.||+||+.+.+.++- ......|+|.|.+.-... |.. +.
T Consensus 74 ~~tSDPYV~I~Lg-----~~--rv~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~gaD~IG~a~IPL~~ 143 (868)
T PLN03008 74 VITSDPYVTVVVP-----QA--TLARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVFGAQIIGTAKIPVRD 143 (868)
T ss_pred cCCCCceEEEEEC-----Cc--ceeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCccCCceeEEEEEEHHH
Confidence 3578999999882 22 24589999999999999988887653 234678888887733222 433 21
Q ss_pred -cCCcccccccccccCCCCCcc---ceEeec
Q 004056 480 -QPGSEVAQTWEPRKGKNRRLD---TLVRRV 506 (776)
Q Consensus 480 -~pg~~~~~~W~~~~~~~r~~~---~q~~~~ 506 (776)
.+| +....|.++++..++|. +++|.+
T Consensus 144 L~~G-e~vd~Wl~Ll~~~~kp~k~~~kl~v~ 173 (868)
T PLN03008 144 IASG-ERISGWFPVLGASGKPPKAETAIFID 173 (868)
T ss_pred cCCC-CceEEEEEccccCCCCCCCCcEEEEE
Confidence 244 33579999888655444 677765
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.2 Score=40.09 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=35.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. ++ .++||.+.+++.||.||+.+.+.+... .....+.+++.+
T Consensus 20 g~~DPYv~v~~~-----~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 20 GKIDPYVRVLVN-----GI--VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYE 72 (120)
T ss_pred CCcCCEEEEEEC-----CE--EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECC
Confidence 468999999872 22 457888889999999998776654322 123455556554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=81.65 E-value=2.2 Score=39.22 Aligned_cols=52 Identities=12% Similarity=-0.091 Sum_probs=35.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+. + .+.||.+.+++.||.|++.+.+.+... .....+.+++.+
T Consensus 20 ~~~dPyv~v~~~-----~---~~~~T~~~~~t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~ 71 (119)
T cd08377 20 GKSDPFCVLELV-----N---ARLQTHTIYKTLNPEWNKIFTFPIKDI---HDVLEVTVYDED 71 (119)
T ss_pred CCCCcEEEEEEC-----C---EeeecceecCCcCCccCcEEEEEecCc---CCEEEEEEEECC
Confidence 357999998773 1 136888889999999998877765321 233455566654
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=81.40 E-value=5.4 Score=40.36 Aligned_cols=75 Identities=12% Similarity=0.206 Sum_probs=43.3
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCCC----CCceeEEEEecCcccCCCccceeeecCCCCc
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV----DDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~~----Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (776)
..+.|.+...+.+|.|+|+|.+.++... ....|.|++|+..... ...+|.+.+||-+ . +.. + ..
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~-g~~------i---~d 127 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-N-GTI------I---QD 127 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--T-S-B-----------S
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-C-CeE------e---cC
Confidence 4578888888999999999999998532 3457999999976643 2689999999987 3 221 1 25
Q ss_pred eEEEEEEEEEe
Q 004056 392 GRLHLAITVLE 402 (776)
Q Consensus 392 GeI~LsL~~~~ 402 (776)
|+..|-+....
T Consensus 128 g~~~L~v~~~~ 138 (184)
T PF14429_consen 128 GEHELPVYKYD 138 (184)
T ss_dssp EEEEEEEEE--
T ss_pred CCEEEEEEEcc
Confidence 77777775444
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=81.39 E-value=13 Score=38.54 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=41.9
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCC--C---CCceeEEEEecC
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF--V---DDTLGDCTINIS 372 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~--~---Dd~LG~v~I~L~ 372 (776)
..++|-|...+.+|.|+|++.+.++... ....|.|++++.... + ...+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4688999888999999999999988532 345799999886543 1 246777777764
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=81.16 E-value=2 Score=39.55 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=46.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eeeeEE-Ee----
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QETGIW-VH---- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~gv~-~~---- 479 (776)
+.+|||+++.+. ++ ..+||.+++++.||+||+.+.+.++.. ......+.+++.+.- ..-|.. +.
T Consensus 11 G~~dPYv~v~v~-----~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l 81 (111)
T cd04052 11 GLLSPYAELYLN-----GK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCceEEEEEC-----CE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCCCCCeEEEEEecHHHH
Confidence 457999999872 22 236777888899999998877665422 233345666666542 111433 21
Q ss_pred cCCcccccccccccC
Q 004056 480 QPGSEVAQTWEPRKG 494 (776)
Q Consensus 480 ~pg~~~~~~W~~~~~ 494 (776)
...++....|-++.+
T Consensus 82 ~~~~~~~~~w~~L~~ 96 (111)
T cd04052 82 IDATSVGQQWFPLSG 96 (111)
T ss_pred HhhhhccceeEECCC
Confidence 122333467877765
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=81.15 E-value=7.6 Score=35.50 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=45.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCcceeeEEEeecc--CCCCCEEEEEEeecC
Q 004056 287 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD 357 (776)
Q Consensus 287 L~V~VieA~~L~~~D~~G~sDPYVkv~L--g~~----~~kTkvikkTlNP~WnEtF~f~V~~--~e~~~~L~V~VyD~D 357 (776)
+.+.+...++..-......++-||.+.+ +.+ ...|+.+.-...+.|||...|++.- .+....|.|.+|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566666666654433333578888866 442 3345554445568999998887653 233457999999864
|
Outlier of C2 family. |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=81.07 E-value=2.2 Score=40.32 Aligned_cols=53 Identities=11% Similarity=0.058 Sum_probs=37.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+ +++ .++||.+.+++.||.||+.+.+.+.. .....+.+++.+.
T Consensus 20 ~~~dPyv~v~~-----~~~--~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~ 72 (125)
T cd04021 20 FKPDPYVEVTV-----DGQ--PPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT 72 (125)
T ss_pred CCCCeEEEEEE-----CCc--ccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence 35799999877 222 46789999999999999887776542 2345566666653
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=80.41 E-value=4.4 Score=39.10 Aligned_cols=52 Identities=6% Similarity=-0.107 Sum_probs=36.4
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
+...+||+.+.+- + .|.||.+.++ .||.||+.++|.+.- ......+.+++.+
T Consensus 17 ~~~~dPYV~Ik~g-----~---~k~kT~v~~~-~nP~WnE~F~F~~~~---~~~~L~v~V~dkd 68 (127)
T cd08394 17 PDKFNTYVTLKVQ-----N---VKSTTIAVRG-SQPCWEQDFMFEINR---LDLGLVIELWNKG 68 (127)
T ss_pred CCCCCCeEEEEEC-----C---EEeEeeECCC-CCCceeeEEEEEEcC---CCCEEEEEEEeCC
Confidence 3456899998772 2 2567777777 599999999998742 2233677777765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 776 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 3e-09 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 5e-08 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 5e-08 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 5e-08 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-08 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 1e-07 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 1e-07 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 3e-07 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 4e-07 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 5e-07 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 9e-07 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 1e-06 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 1e-06 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 1e-06 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 2e-06 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 2e-06 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 2e-06 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 1e-05 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 1e-05 | ||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 1e-04 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 1e-04 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-04 | ||
| 1gmi_A | 136 | Structure Of The C2 Domain From Novel Protein Kinas | 2e-04 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 2e-04 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 2e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C Epsilon Length = 136 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 776 | |||
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 5e-33 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 1e-32 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 2e-28 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 3e-28 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 1e-26 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 2e-25 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 3e-24 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 3e-24 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 1e-22 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 2e-22 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 6e-22 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 6e-22 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 2e-21 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 3e-21 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 4e-21 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 4e-20 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 6e-20 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 1e-19 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 1e-19 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 3e-19 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 6e-19 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 7e-18 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 2e-18 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 6e-18 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 1e-17 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 5e-15 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 3e-17 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 3e-17 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 6e-17 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 1e-16 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 2e-16 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 2e-16 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 7e-16 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 8e-16 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 1e-15 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 4e-15 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 9e-15 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 2e-14 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 2e-14 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 3e-14 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 2e-12 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-07 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 7e-07 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 8e-07 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 2e-06 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 8e-06 |
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 5e-33
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 288 RVEVVEASDMK---PSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 341
V V+ A+ + D+ DPYV+ + R RT+ ++P W+E F +
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65
Query: 342 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
NVL I + D ++ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 66 PNQE-NVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-32
Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 336
S + V +V+V++A+D+ +D +G +DP+ +LG R +T T K L+P+W++ F
Sbjct: 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVF 64
Query: 337 NIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI---PLQNIKIG 392
PI D +VL + V D+D D LG I + +RDGQ + + L+ G
Sbjct: 65 TFPIK--DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKG 122
Query: 393 RLHLAITVL 401
++L + ++
Sbjct: 123 VIYLEMDLI 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-28
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 20/133 (15%)
Query: 288 RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEE 335
++++ EA +KP+ L DPY+ + R +T T++KT SP WH+E
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 336 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIG 392
F + + + + V DD + +CTI +L + WI L+ G
Sbjct: 69 FVTDVC---NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123
Query: 393 RLHLAITVLEESA 405
++++ I + S
Sbjct: 124 KVYVIIDLSGSSG 136
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 3e-28
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 340
+ A + VV A ++ D G +DPYV Q+G + RTKT L+P W E F+
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC 72
Query: 341 STWDSPNVLVIEVRDKDHFV------------DDTLGDCTINISDLRDGQRHDMWIPLQN 388
+S + + + V D+D + DD LG I + L D+W L
Sbjct: 73 H--NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDK 128
Query: 389 IKI-----GRLHLAITV 400
G + L I+V
Sbjct: 129 RTDKSAVSGAIRLHISV 145
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 21/148 (14%)
Query: 268 ASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPY 317
+ P S + Y RV + EA ++P+ + L DPY+ +
Sbjct: 12 SGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV 71
Query: 318 R-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLR 375
R +T T++KT P ++EEF ++ L + V + D + +CT+ +L
Sbjct: 72 RVGQTSTKQKTNKPTYNEEFCANVT---DGGHLELAVFHETPLGYDHFVANCTLQFQELL 128
Query: 376 DGQR----HDMWIPLQNIKIGRLHLAIT 399
+ W+ L+ G++ + IT
Sbjct: 129 RTTGASDTFEGWVDLE--PEGKVFVVIT 154
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 2e-25
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST--WDS 345
RV V AS++ P G DP V + +TK L+P W+E + D
Sbjct: 10 RVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDF 68
Query: 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-------IGRLHLA 397
+ L I V+D + + +G T+ + DL Q + L ++ + L
Sbjct: 69 SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLV 128
Query: 398 IT 399
I
Sbjct: 129 IG 130
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 3e-24
Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)
Query: 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEE 335
S P V +V A ++ +D DPYV+ ++ + +P+W+E
Sbjct: 2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 336 FNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQNIKI-- 391
F +S + L ++ DKD DD +G+ TI + + +G + +
Sbjct: 62 FIFTVS--EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119
Query: 392 GRLHLAIT 399
G + +A++
Sbjct: 120 GEIWVALS 127
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 3e-24
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 20/137 (14%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR------FRTKTQRKTLSPKWHE 334
+E RV V+ + D+ G +DPYV+ L +TKT +K+L+PKW+E
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 387
E + + L+ EV D++ DD LG + + L L
Sbjct: 76 EILFRVH--PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133
Query: 388 -----NIKIGRLHLAIT 399
+ G L L +T
Sbjct: 134 PRSHKSRVKGYLRLKMT 150
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-22
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
++ V+ A + PYV+ + +T+ T SPKW + + ++ +
Sbjct: 39 QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT---PVS 95
Query: 348 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQN-------IKIGRLHL 396
L V D LG ++I + + + ++ + LQ IG L +
Sbjct: 96 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 6e-22
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
Query: 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY------RFRTKTQRKTLSPKWHE 334
+ RV+V+ + D+ G +DPYV+ L +TKT +K+L+PKW+E
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 387
E + + ++ EV D++ DD LG + + L L
Sbjct: 64 EILFRVL--PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121
Query: 388 -----NIKIGRLHLAITVLEESAK 406
+ G L L +T L ++
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGS 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 6e-22
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V +A ++ P D NGL+DPYVK +L P + +TKT + +L+P+W+E F +
Sbjct: 34 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93
Query: 343 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
D L +E+ D D +D +G + IS+L D W L + + G
Sbjct: 94 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEG 143
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-21
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLS 329
FS+ + + + ++ A +KP D NGLADPYVK L P + RTKT R T +
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 330 PKWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPL 386
P W+E T + L I V D+D F ++ +G+ ++ L+ QR + I L
Sbjct: 79 PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
Query: 387 QN 388
+
Sbjct: 139 ER 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 3e-21
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P + F TK RKTL+P
Sbjct: 24 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 83
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 388
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 84 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-21
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P + F TK RKTL+P
Sbjct: 32 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 91
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNI 389
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 92 FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151
Query: 390 K 390
+
Sbjct: 152 E 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 94.6 bits (234), Expect = 4e-20
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 281 KEPVAYARVEVVEASD---MKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHE 334
+ V V+ A+ D+ DPYV+ + R RT+ ++P W+E
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 335 EFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394
F + VL I + D ++ +D+TLG T +S ++ G++ ++ + L
Sbjct: 74 TFEFILDPNQEN-VLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132
Query: 395 H 395
Sbjct: 133 E 133
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-20
Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDS 345
R+ V+ A ++ D L DP+ K + T T + TL PKW++ +++ +
Sbjct: 8 RLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV---GK 64
Query: 346 PNVLVIEVRDKDHFVDDT----LGDCTINISDLRDGQRHDMWIPLQNIKIGR 393
+ + I V + LG + + + + + L K+
Sbjct: 65 TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRLDLCKLNP 115
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 331
FSV + V++++A ++ D +G +DP+VK L P ++ TK +RK L+P
Sbjct: 16 QFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH 75
Query: 332 WHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
W+E F ++ +L ++V D D F +D +G+ +I ++ + Q W L+
Sbjct: 76 WNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 1e-19
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 333
+ +++A ++ P D NG +DP+VK L P Y+ RTK +K+L+P+W+
Sbjct: 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 334 EEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 388
+ + + L + V D D F +D LG+ I++S W PL+
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 3e-19
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 330
+ +D A V +EA + +G D YV+G + +T +++ L
Sbjct: 16 HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72
Query: 331 KWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
W E +P++ + P L + +R D F G+ + + W L+
Sbjct: 73 TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 6e-19
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPK 331
+S+D V +++A+++ D+ G +DPYVK L P +F TK RKTL+P
Sbjct: 9 QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 68
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 387
++E+F + + LV+ V D D F D +G+ + ++ + G + W LQ
Sbjct: 69 FNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 126
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 83.7 bits (207), Expect = 7e-18
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 19/174 (10%)
Query: 244 KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 303
+ ++ F E L + FS+ V ++EA ++K D+
Sbjct: 109 PMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG 168
Query: 304 GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKD 357
GL+DPYVK L + +T ++ TL+P ++E F+ + V +V+ V D D
Sbjct: 169 GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228
Query: 358 HFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNIKIGRLHLAI 398
+D +G + + RH W LQ + LA+
Sbjct: 229 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAV 282
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-18
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
+ ++E + G DPYVK L P +T+T P +HE F P+
Sbjct: 31 LHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89
Query: 344 DSPNVLVIEVRDKDHF--VDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGR-LHLAIT 399
D L++ V ++ +G + + L + W L +GR HL +
Sbjct: 90 DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 6e-18
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 11/109 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ A D+ + +PYVK P + RTKT +KTL PKW++ F
Sbjct: 22 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81
Query: 344 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 387
+L I + D+ + + LG+ I + W LQ
Sbjct: 82 REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 331
F++ V +++A D+ D NG +DPYVK L P +F+TK RKTL+P
Sbjct: 10 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 69
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTI-NISDLRDGQRH-DMWIPLQ 387
++E F + + L V D D F D +G + N+ +L + +W +
Sbjct: 70 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129
Query: 388 -----NIKIGRLHLAITVLEESAK 406
+G L+ ++ L +
Sbjct: 130 EGGSEKADLGELNFSLCYLPTAGL 153
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 5e-15
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V +++AS++K DL G +DPYVK L + +T ++ TL+P ++E ++
Sbjct: 155 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 214
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 387
NV L I V D D ++ +G C + + + W L
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 274
Query: 388 N 388
Sbjct: 275 E 275
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ A D+ + +PYVK P + RTKT +KTL PKW++ F
Sbjct: 25 VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84
Query: 344 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQN 388
+L I + D+ + + LG+ I + W LQ
Sbjct: 85 REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQT 133
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 341
V +++A ++K D+ G +DPYVK L + +T T+++ L+P ++E F+IP
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 387
++I V DKD +D +G ++ +H W L+
Sbjct: 80 KLRET-TIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 6e-17
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 19/129 (14%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 29 VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88
Query: 344 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNI 389
V +V+ V D D +D +G + + RH W LQ
Sbjct: 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148
Query: 390 KIGRLHLAI 398
+ LA+
Sbjct: 149 EEVDAMLAV 157
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-16
Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPIST 342
+ +++ S++ ++ + P FRT+ + + ++E F + +S
Sbjct: 47 ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106
Query: 343 WDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDMWIPLQN 388
L ++V D +++ LG I+++++ R G+R W L +
Sbjct: 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-16
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 289 VEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V E + +D ++PYVK L P + +T +R T++P + E I
Sbjct: 27 VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86
Query: 343 WDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
L V F + LG+ I + + ++ D +PL
Sbjct: 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH 133
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 2e-16
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V V ++ +G +DPYV+ L P R +T +KTL+P + + F+ +S
Sbjct: 28 VVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86
Query: 344 DSPN-VLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ L + V++ F+ LG + ++ + W L
Sbjct: 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 7e-16
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 341
V V++A + SD++GL+DPYVK L + +T ++ T + ++E F+IP
Sbjct: 34 VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
+ + + V D + ++ +G + + G H W L +
Sbjct: 94 SLEEI-SVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-16
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 41 VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 344 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
D L I V D D +D +G C + IS + +H + W LQN
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKP-------SDLNGLADPYVKGQLGPYR---FRTKTQ 324
FS + V V+EA D+ P ++PYVK L P + +T +
Sbjct: 16 HFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK 75
Query: 325 RKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 382
RKT P + E + I ++ L++ V D D F +G ++ + ++ +
Sbjct: 76 RKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135
Query: 383 WIPLQN 388
W L
Sbjct: 136 WKALIP 141
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 4e-15
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 9/119 (7%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 342
+A+ V A + D Y+K G FRT +P+W ++ +
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 343 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
+ L ++V D D+ DD LG C G H++ L + GR+ +
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSGF-HEVTCELNH---GRVKFSYHA 502
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 9e-15
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGL-ADPYVKGQLGPY---RFRTKTQRKTLSP 330
+FS++ V + EA + D + +DPY+K + P + +T+ RKTL P
Sbjct: 12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71
Query: 331 KWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ-RHDMWIPL 386
+ E F + L + D F DD +G+ I +S + + + M +
Sbjct: 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131
Query: 387 Q 387
Sbjct: 132 I 132
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-14
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 9/107 (8%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 343
+ V+ D+ D +PYVK L P + +TK RKT +P ++E +
Sbjct: 24 IMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82
Query: 344 DSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
++ L + V + + LG T+ + D + W L
Sbjct: 83 ETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-14
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD 344
+ V V +A + + YV ++ + T + P W ++F I+
Sbjct: 5 SLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEIN--R 58
Query: 345 SPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 387
L +EV +K D +G I + + + + W+ L
Sbjct: 59 LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 289 VEVVEASDMKPSDL-NGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 342
VEV+ A + PYVK L +T+ RKTL P + + S
Sbjct: 34 VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES- 92
Query: 343 WDSPNVLVIEV-RDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
VL + V D +G I + +L W L
Sbjct: 93 -PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF 138
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V +A + + YV ++ T + P W ++F I+ D
Sbjct: 18 VGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIA-VRGSQPSWEQDFMFEINRLDLG-- 71
Query: 349 LVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 387
L +EV +K D +G I + + + + W+ L
Sbjct: 72 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 112
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V+EA+++K NG ++PY + +G + T+T + TL+PKW+ I +V
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY-QDV 449
Query: 349 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 380
L + + D+D F DD LG I ++ +R Q
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 6e-07
Identities = 50/408 (12%), Positives = 108/408 (26%), Gaps = 134/408 (32%)
Query: 64 FQRRVLKDSETVRWLN--HAIEK----MWPICM--EQIASQ---KLLLPIIPWFLEKYKP 112
+ +L E + A+ W + E++ + ++L + + K
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 113 WTAKKALVQHLY------LGRNPPMLTEMRV------------LRQSNDDDHMVLELGM- 153
+ +++ +Y L + + + V L + +++++ G+
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-GVL 159
Query: 154 ----NFLTADDMSAILAVKLRKRLGFGM-WAKM-------HVTGM------HVEGKVLVG 195
++ D L+ K++ ++ F + W + V M ++
Sbjct: 160 GSGKTWVALD---VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 196 VKFLRRWPF-----IDRLRVCFAEPPYFQMTVKPIFTHGL----DVTEFPGIAGWLDKLL 246
LR PY + L +V K
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLLVLLNV--------QNAKAW 259
Query: 247 SIAFE---QTLV-EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVE----ASDMK 298
+ AF + L+ V D F S S+D + EV D +
Sbjct: 260 N-AFNLSCKILLTTRFKQVTD---FLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCR 314
Query: 299 PSDLNGLA---DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355
P DL +P + E ++TWD N +
Sbjct: 315 PQDLPREVLTTNPRRLSIIA------------------ESIRDGLATWD--NWKHVNCDK 354
Query: 356 KDHFVDDTLG------------DCTINISDLRDGQRHDMWIPLQNIKI 391
++ +L ++ IP + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV----FPP----SAHIPTILLSL 394
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 7e-07
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPK---WHEEF--NIPIS 341
++ ++EA ++ P Y + L RT ++ ++ S W E F N +
Sbjct: 14 KLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68
Query: 342 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
L + K +G T+ ++ L + W P+ +
Sbjct: 69 VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGS 128
Query: 401 LEESAKG 407
G
Sbjct: 129 GGGGGSG 135
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-07
Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 285 AYARVEVVEASDMKPSDLNG-LADPYV-----KGQLGPYRFRTKTQRKTLSPKWHEEFNI 338
+ R+ + G +PY + ++ T+ P W F+
Sbjct: 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGR 393
I + V+ I V+ K+ D + + T+ + L ++ + ++W+ L+ GR
Sbjct: 70 HI---NKGRVMQIIVKGKN---VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGR 121
Query: 394 LHLAITVLEESA 405
+ + E +
Sbjct: 122 MLMNARYFLEMS 133
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 2e-06
Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 285 AYARVEVVEASDMKPSDLNGLADPY----VKGQLGPYRFRTKTQR-KTLSPKWHEEFNIP 339
+ R+ + P+ +K L R +T Q+ T+ P+W F+
Sbjct: 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH 65
Query: 340 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGRL 394
I ++++ ++ + + T+ +S L ++ + + W+ LQ ++
Sbjct: 66 IYEGRVIQIVLM------RAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKV 117
Query: 395 HLAITVLEE 403
+++ E
Sbjct: 118 LMSVQYFLE 126
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 8/116 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSP-KWHEEFNIPISTWDSP 346
V + S+++ G AD K F ++ + E F P+++
Sbjct: 24 IVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78
Query: 347 N-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400
N VL I++ + F + +G + + + + R ++ L + + ++++
Sbjct: 79 NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSM 134
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.96 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.96 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.84 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.82 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.82 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.82 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.81 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.8 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.8 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.8 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.8 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.79 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.79 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.79 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.79 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.78 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.78 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.77 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.77 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.77 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.77 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.76 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.76 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.76 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.76 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.75 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.75 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.75 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.74 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.73 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.72 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.67 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.66 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.58 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.57 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.55 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.52 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.51 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.5 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.38 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.32 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.09 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.08 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.08 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.94 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.89 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 98.6 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 98.54 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 98.4 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 98.29 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 97.57 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 97.39 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 97.36 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 97.29 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 97.18 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 97.17 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 97.12 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 97.07 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 96.99 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 96.94 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 96.94 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 96.66 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 96.5 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 96.31 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 96.19 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 95.94 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 95.9 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 95.82 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 94.52 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 94.48 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 93.73 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 93.68 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 93.57 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 92.85 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 92.45 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 92.24 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 92.22 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 91.63 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 90.99 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 90.99 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 90.86 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 89.33 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 84.07 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 83.58 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 81.76 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 81.5 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 80.95 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-29 Score=262.79 Aligned_cols=234 Identities=23% Similarity=0.333 Sum_probs=193.2
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+..+|++.|....+.|.|+|++|++|+++|.+|.+||||++++++ +.++|+++++|+||.|||+|.|.+...+ ...
T Consensus 6 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~ 85 (284)
T 2r83_A 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGK 85 (284)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTC
T ss_pred eEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcC
Confidence 456899999999999999999999999999999999999999964 5889999999999999999999987533 246
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC------CceEEEEEEEEEecC------------C---
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEES------------A--- 405 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~------~~GeI~LsL~~~~~~------------~--- 405 (776)
.|.|+|||+|.++ |++||++.++|.++..+...+.|++|.+. ..|+|++.+.|.+.. +
T Consensus 86 ~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~ 165 (284)
T 2r83_A 86 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165 (284)
T ss_dssp EEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCCCC
T ss_pred EEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCCCc
Confidence 8999999999987 99999999999999988888999999752 469999999887641 1
Q ss_pred --CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee
Q 004056 406 --KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH 479 (776)
Q Consensus 406 --k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~ 479 (776)
...+|||+++++. ..+++..++||.+++++.||+||+.+.+.++..+.......+.+++.+. ..+- |-. +.
T Consensus 166 d~~~~~dpyv~v~~~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~ 242 (284)
T 2r83_A 166 DVGGLSDPYVKIHLM---QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 242 (284)
T ss_dssp STTSCCCEEEEEEEE---ETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEE
T ss_pred CCCCCcCeEEEEEEE---eCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEEC
Confidence 1347999999983 3466667899999999999999999988888776655567788888873 2222 443 33
Q ss_pred cCC-cccccccccccCCCCCccceEeecCC
Q 004056 480 QPG-SEVAQTWEPRKGKNRRLDTLVRRVPN 508 (776)
Q Consensus 480 ~pg-~~~~~~W~~~~~~~r~~~~q~~~~~~ 508 (776)
-.. ....+||.+|+.+||++.++||..-.
T Consensus 243 l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 243 YNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp TTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 222 23359999999999999999997653
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=263.31 Aligned_cols=235 Identities=21% Similarity=0.332 Sum_probs=189.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg---~~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...|++.|....+.|.|+|++|++|+++|.+|.+||||++++. .+.++|+++++|+||+|||+|.|.+...+ ...
T Consensus 7 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 86 (296)
T 1dqv_A 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQR 86 (296)
T ss_dssp CEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSC
T ss_pred eEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCC
Confidence 45689999999999999999999999999999999999999994 47899999999999999999999986432 235
Q ss_pred EEEEEEeecCCCC-CCceeEEEEe-cCcccC-CCccceeeecCCC-----CceEEEEEEEEEecC------------C--
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTIN-ISDLRD-GQRHDMWIPLQNI-----KIGRLHLAITVLEES------------A-- 405 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~-L~~L~~-~~~~~~W~~L~~~-----~~GeI~LsL~~~~~~------------~-- 405 (776)
.|+|+|||+|.++ |++||++.++ |.++.. ......|+.|... ..|+|++.++|.+.. +
T Consensus 87 ~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~ 166 (296)
T 1dqv_A 87 KLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKA 166 (296)
T ss_dssp CCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEESCCC
T ss_pred EEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccceeEEEEEEeecCCc
Confidence 7999999999987 9999999996 544443 3456789999642 369999999887642 1
Q ss_pred ---CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE-E
Q 004056 406 ---KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW-V 478 (776)
Q Consensus 406 ---k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~ 478 (776)
...+|||+++++ ..++++.+++||.+++++.||+||+.+.+.++..........+.+++++.. .+- |.. +
T Consensus 167 ~d~~g~~Dpyv~v~l---~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i 243 (296)
T 1dqv_A 167 MDLTGFSDPYVKASL---ISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRV 243 (296)
T ss_dssp CSSSSCCCEEEEECC---CTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCC
T ss_pred cCCCCCCCcEEEEEE---EeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEE
Confidence 134699999998 346777788999999999999999999888887766667788999998733 222 443 2
Q ss_pred e--cCCcccccccccccCCCCCccceEeecCCc
Q 004056 479 H--QPGSEVAQTWEPRKGKNRRLDTLVRRVPNG 509 (776)
Q Consensus 479 ~--~pg~~~~~~W~~~~~~~r~~~~q~~~~~~~ 509 (776)
. .-+....+||.+|+.+||++.++||..-..
T Consensus 244 ~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 244 GPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp SSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred CCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 2 223224599999999999999999987644
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=177.30 Aligned_cols=122 Identities=32% Similarity=0.487 Sum_probs=110.2
Q ss_pred eeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 277 SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 277 sL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
++.|..+.|.|+|+|++|++|+++|..|.+||||++++++++++|+++++++||.|||+|.|.+.. ....|.|+|||+
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~i~V~d~ 82 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDE 82 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecC--CCCEEEEEEEEC
Confidence 467888999999999999999999999999999999999999999999999999999999999985 347899999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCC-----CCceEEEEEEEEEe
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE 402 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~~~~ 402 (776)
|..+ |++||++.++|.++..+. ..|++|.+ ...|+|+|+++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 9986 999999999999997643 58999975 24799999999874
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.2e-20 Score=172.24 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=107.6
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCC--CCCEEEEEEeecCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV 360 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~~~L~V~VyD~D~~~ 360 (776)
..|.|.|+|++|++|+.+|. |.+||||++++++++++|+++++++||+|||+|.|.+...+ ....|.|+|||+|.++
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~ 83 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG 83 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence 56899999999999999998 99999999999999999999999999999999999997532 3578999999999986
Q ss_pred -CCceeEEEEecCcccCCCccceeee---cCCC----CceEEEEEEEEEec
Q 004056 361 -DDTLGDCTINISDLRDGQRHDMWIP---LQNI----KIGRLHLAITVLEE 403 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~~~~W~~---L~~~----~~GeI~LsL~~~~~ 403 (776)
|++||++.++|.++..+...+.|+. |.+. ..|+|+|+++|.+.
T Consensus 84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 9999999999999988888889988 6442 25999999999885
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=172.71 Aligned_cols=116 Identities=25% Similarity=0.426 Sum_probs=103.5
Q ss_pred eeEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 284 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~---D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
.|.|.|+|++|++|+++ |..|.+||||++++++ ++++|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence 47899999999999984 6678999999999986 789999999999999999999999643 3578999999999
Q ss_pred CCCCCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEE
Q 004056 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 400 (776)
Q Consensus 358 ~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~ 400 (776)
..+|++||++.++|.++..+.....|++|.+...|.|+|+++.
T Consensus 81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~ 123 (126)
T 1rlw_A 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEEC
T ss_pred CCCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEe
Confidence 9889999999999999998888999999998667777777654
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.3e-20 Score=181.14 Aligned_cols=115 Identities=26% Similarity=0.463 Sum_probs=102.4
Q ss_pred CceeEEEEEEEEecCCCCCCC----------CCCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEE
Q 004056 282 EPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~----------~G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~ 350 (776)
...|.|+|+|++|++|+++|. .|.+||||++++++++ ++|+++++|+||+|||+|.|.+.. .+.|.
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~~L~ 102 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GGHLE 102 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CCEEE
Confidence 467999999999999999883 3679999999998854 799999999999999999999874 36899
Q ss_pred EEEeecCCCC-CCceeEEEEecCcccCC----CccceeeecCCCCceEEEEEEEEE
Q 004056 351 IEVRDKDHFV-DDTLGDCTINISDLRDG----QRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 351 V~VyD~D~~~-Dd~LG~v~I~L~~L~~~----~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
|+|||+|.++ |++||++.|+|.++..+ ...+.|++|++ .|+|+|+++|.
T Consensus 103 ~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~ 156 (157)
T 2fk9_A 103 LAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT 156 (157)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred EEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence 9999999987 99999999999998754 66899999985 89999999874
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=173.44 Aligned_cols=121 Identities=21% Similarity=0.324 Sum_probs=108.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvik-kTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
..+.|.|+|+|++|++|+++|..|.+||||++++++++++|++++ +++||+|||+|.|.+.. ....|.|+|||++.+
T Consensus 6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVG 83 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSC
T ss_pred CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCC
Confidence 347899999999999999999999999999999999999999998 89999999999999986 457899999999998
Q ss_pred C-CCceeEEEEecCcc-cCCCccceeeecCC--CCceEEEEEEEEEec
Q 004056 360 V-DDTLGDCTINISDL-RDGQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L-~~~~~~~~W~~L~~--~~~GeI~LsL~~~~~ 403 (776)
+ |++||++.++|.++ ..+.....|++|.. ...|+|+|+++|.+.
T Consensus 84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeC
Confidence 6 99999999999998 44555788999962 347999999999986
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=171.29 Aligned_cols=115 Identities=32% Similarity=0.479 Sum_probs=103.7
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC---
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF--- 359 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~--- 359 (776)
..|.|+|+|++|++|+++|.+|.+||||+++++.++++|+++++|+||.|||+|.|.+... .+.|.|+|||+|..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~--~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS--SDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST--TCEEEEEEEECCCSHHH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC--CCEEEEEEEECCCCccc
Confidence 3699999999999999999999999999999999999999999999999999999999753 37899999999985
Q ss_pred ---------CCCceeEEEEecCcccCCCccceeeecCCC-----CceEEEEEEEEE
Q 004056 360 ---------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL 401 (776)
Q Consensus 360 ---------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~-----~~GeI~LsL~~~ 401 (776)
+|++||++.++|.++ ....+.|++|... ..|+|+|+++|.
T Consensus 93 ~~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 499999999999998 3456899999842 479999999985
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=174.02 Aligned_cols=120 Identities=30% Similarity=0.429 Sum_probs=99.3
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy 354 (776)
....+.|+|+|++|++|+.+|..|.+||||++++.+ ..++|+++++|+||+|||+|.|.+.. ....|.|+||
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~l~~~V~ 93 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP--QQHRLLFEVF 93 (153)
T ss_dssp CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT--TTCEEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC--CCCEEEEEEE
Confidence 456799999999999999999999999999999974 58899999999999999999999985 3468999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCcc------ceeeecCCC-----CceEEEEEEEEEe
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRH------DMWIPLQNI-----KIGRLHLAITVLE 402 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~------~~W~~L~~~-----~~GeI~LsL~~~~ 402 (776)
|+|.++ |++||++.++|.++..+... ..|++|... ..|+|+|+++|.|
T Consensus 94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999986 99999999999999876543 589999652 3799999999975
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=170.57 Aligned_cols=116 Identities=25% Similarity=0.423 Sum_probs=101.8
Q ss_pred ceeEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEeCCe-EEEeeeecCCCCCcceeeEEEeeccCCCCCEEE
Q 004056 283 PVAYARVEVVEASDMKPSDLNGL-----------ADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 350 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~-----------sDPYVkv~Lg~~-~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~ 350 (776)
..|.|+|+|++|++|+++|.++. +||||+++++.+ ..+|+++++|+||+|||+|.|.+... +.|.
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~---~~L~ 80 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG---RKIE 80 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE---CEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC---CEEE
Confidence 35899999999999999885443 999999999875 47999999999999999999999752 7899
Q ss_pred EEEeecCCCC-CCceeEEEEecCcccCCC--ccceeeecCCCCceEEEEEEEEEec
Q 004056 351 IEVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEE 403 (776)
Q Consensus 351 V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~--~~~~W~~L~~~~~GeI~LsL~~~~~ 403 (776)
|+|||+|.++ |++||++.++|.++..+. ..+.|++|++ .|+|+|+++|...
T Consensus 81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 81 LAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEec
Confidence 9999999987 999999999999988743 3489999985 8999999999764
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=170.51 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=100.6
Q ss_pred eeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCcceeeEEEe-eccCC-CCC
Q 004056 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SPN 347 (776)
Q Consensus 275 ~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~L-----g~~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~~~ 347 (776)
-|.+.|....+.|.|+|++|+||+. +.+|.+||||++++ ...+++|+++++|+||+|||+|.|. +...+ ...
T Consensus 10 ~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~ 88 (134)
T 2b3r_A 10 AVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQR 88 (134)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTC
T ss_pred EEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcC
Confidence 4678888889999999999999997 77899999999999 3368899999999999999999999 76322 346
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCc
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI 391 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~ 391 (776)
.|.|+|||+|.++ +++||++.++|.++..+...+.|++|.+...
T Consensus 89 ~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 89 ELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY 133 (134)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence 8999999999987 9999999999999998888899999987543
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-19 Score=175.30 Aligned_cols=121 Identities=28% Similarity=0.439 Sum_probs=99.6
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEe
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~Vy 354 (776)
....|.|+|+|++|++|+.++..|.+||||++++++ ++++|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~L~~~V~ 81 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP--QRHRILFEVF 81 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT--TTCEEEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC--CCCEEEEEEE
Confidence 456899999999999999999999999999999975 67899999999999999999999985 3468999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCcc-c-----eeeecCCC-----CceEEEEEEEEEec
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRH-D-----MWIPLQNI-----KIGRLHLAITVLEE 403 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~-~-----~W~~L~~~-----~~GeI~LsL~~~~~ 403 (776)
|+|.++ |++||++.|+|.++..+... + .|+.|... ..|+|+|+++|.+.
T Consensus 82 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred ECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 999986 99999999999999876443 2 79999752 37999999999986
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=169.83 Aligned_cols=119 Identities=28% Similarity=0.488 Sum_probs=105.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC--CC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e--~~ 346 (776)
+...+++.|....+.|+|+|++|++|+.+|..|.+||||++++.+ ++++|+++++|+||+|||+|.|.+...+ ..
T Consensus 13 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~ 92 (141)
T 2d8k_A 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQ 92 (141)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTT
T ss_pred eEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHccc
Confidence 456789999999999999999999999999999999999999953 6899999999999999999999853211 24
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
..|.|+|||+|.++ |++||++.++|.++..+...+.|++|.+..
T Consensus 93 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 93 RILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137 (141)
T ss_dssp SEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEECC
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCCC
Confidence 68999999999986 999999999999999888889999998643
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-20 Score=178.28 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=103.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCcceeeEEEeeccCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikkTlNP~WnEtF~f~V~~~e- 344 (776)
+..+|++.|....+.|+|+|++|+||+++|.+|.+||||++++.+ .++||+++++|+||+|||+|.|.+...+
T Consensus 30 G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l 109 (155)
T 2z0u_A 30 TRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPAL 109 (155)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHH
T ss_pred EEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHh
Confidence 456899999999999999999999999999999999999999976 3799999999999999999999987422
Q ss_pred CCCEEEEEEeecCCCC-CCceeEEEEecCcccC-CCccceeeecCC
Q 004056 345 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHDMWIPLQN 388 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~-~~~~~~W~~L~~ 388 (776)
....|.|+|||+|.++ +++||++.++|.++.. +.....|++|.+
T Consensus 110 ~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 110 HQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155 (155)
T ss_dssp HHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred CcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence 1358999999999987 9999999999999964 567889999863
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-19 Score=173.13 Aligned_cols=117 Identities=29% Similarity=0.476 Sum_probs=105.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg---~~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+..++++.|....+.|+|+|++|++|+.+|.+|.+||||++++. .++++|+++++|+||+|||+|.|.+...+ ...
T Consensus 29 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 108 (152)
T 1rsy_A 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 108 (152)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTC
T ss_pred eEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCC
Confidence 45689999999999999999999999999999999999999995 36899999999999999999999986422 246
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||+|.++ |++||++.++|.++..+...+.|++|.+
T Consensus 109 ~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 109 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred EEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 8999999999986 9999999999999988888899999986
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-19 Score=170.70 Aligned_cols=117 Identities=29% Similarity=0.476 Sum_probs=105.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg---~~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...+++.|....+.|.|+|++|++|+.+|.+|.+||||++++. .++++|+++++|+||+|||+|.|.+...+ ...
T Consensus 21 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~ 100 (143)
T 3f04_A 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 100 (143)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTC
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCC
Confidence 45678999999999999999999999999999999999999994 36899999999999999999999987422 236
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||+|.++ |++||++.++|.++..+...+.|++|++
T Consensus 101 ~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 8999999999986 9999999999999999888999999975
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=166.16 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=97.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCC--
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e-- 344 (776)
+...+++.|....+.|.|+|++|+||+++|.+|.+||||++++. ..+++|+++++|+||+|||+|.|.+...+
T Consensus 5 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 84 (129)
T 2bwq_A 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 84 (129)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred EEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHh
Confidence 34678899999999999999999999999999999999999993 47899999999999999999999953211
Q ss_pred CCCEEEEEEeecCCCC---CCceeEEEEecCcccCCCccceeeecC
Q 004056 345 SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~---Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
....|.|+|||+|.++ +++||++.++|.++.... .+.|++|+
T Consensus 85 ~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 85 RERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred cCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 2468999999999986 899999999999988755 88999985
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=171.30 Aligned_cols=122 Identities=20% Similarity=0.343 Sum_probs=105.8
Q ss_pred CCCCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC
Q 004056 270 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD 344 (776)
Q Consensus 270 ~~~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e 344 (776)
+.+...++|.|....+.|.|+|++|++|+++| +|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+
T Consensus 12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 90 (153)
T 3fbk_A 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED 90 (153)
T ss_dssp -CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH
Confidence 34567899999999999999999999999999 69999999999943 5799999999999999999999985433
Q ss_pred CCCEEEEEEeecCCCC--CCceeEEEEecCcccC-CCccceeeecCCCCce
Q 004056 345 SPNVLVIEVRDKDHFV--DDTLGDCTINISDLRD-GQRHDMWIPLQNIKIG 392 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~--Dd~LG~v~I~L~~L~~-~~~~~~W~~L~~~~~G 392 (776)
....|.|+|||+|.++ |++||++.++|.++.. +.....|++|.+...|
T Consensus 91 ~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g 141 (153)
T 3fbk_A 91 DQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG 141 (153)
T ss_dssp TTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred hCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence 4467999999999973 8999999999999984 6778899999876544
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.8e-19 Score=167.41 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=102.3
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
+..+|++.|....+.|+|+|++|+ ++|.+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+. .
T Consensus 13 G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~ 89 (138)
T 1wfm_A 13 PKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPT 89 (138)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTT
T ss_pred eEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCC
Confidence 456899999999999999999999 467889999999999953 46899999999999999999999875432 4
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
..|.|+|||+|.++ |++||++.++|.++..+...+.|++|.+..
T Consensus 90 ~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 90 ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp CEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred CEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCCC
Confidence 58999999999987 999999999999998777889999998743
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-19 Score=167.49 Aligned_cols=120 Identities=23% Similarity=0.284 Sum_probs=104.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCC--
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD-- 344 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e-- 344 (776)
+...+++.|....+.|.|+|++|++|+++|.+|.+||||++++. .++++|+++++|+||+|||+|.|.+...+
T Consensus 8 G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~ 87 (141)
T 1v27_A 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 87 (141)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGG
T ss_pred cEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHh
Confidence 45678999999999999999999999999999999999999993 36889999999999999999999953222
Q ss_pred CCCEEEEEEeecCCCC---CCceeEEEEecCcccCCCccceeeecCCCCce
Q 004056 345 SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392 (776)
Q Consensus 345 ~~~~L~V~VyD~D~~~---Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~G 392 (776)
....|.|+|||++.++ +++||++.++|.++.... ...|++|.+...|
T Consensus 88 ~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g 137 (141)
T 1v27_A 88 RERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG 137 (141)
T ss_dssp GTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred cCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence 2468999999999986 899999999999987654 7899999876554
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=172.54 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=105.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
+...+++.|....+.|.|+|++|++|+++| .+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+.
T Consensus 10 G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~ 89 (148)
T 3fdw_A 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLL 89 (148)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTG
T ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHh
Confidence 457899999999999999999999999988 689999999999974 48999999999999999999999875432
Q ss_pred -CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 346 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 -~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
...|.|+|||+|.++ |++||++.++|.++..+...+.|++|.++
T Consensus 90 ~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 135 (148)
T 3fdw_A 90 AQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK 135 (148)
T ss_dssp GGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred CceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence 357999999999987 99999999999999887788899999874
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-19 Score=167.69 Aligned_cols=117 Identities=34% Similarity=0.522 Sum_probs=104.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEe-eccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~-V~~~e~ 345 (776)
+...+++.|....+.|.|+|++|++|++++.+|.+||||++++.+ .+++|+++++|+||+|||+|.|. +...+.
T Consensus 16 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 95 (142)
T 2chd_A 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDM 95 (142)
T ss_dssp CEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred ceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHc
Confidence 446789999999999999999999999999999999999999975 78999999999999999999998 543211
Q ss_pred -CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 -~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
...|.|+|||+|.++ |++||++.++|.++..+.....|+.|+.
T Consensus 96 ~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 96 QRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp HHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred cCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 258999999999987 8999999999999999888999999875
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-19 Score=171.53 Aligned_cols=120 Identities=31% Similarity=0.495 Sum_probs=103.3
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~ 346 (776)
+...+++.|. .+.|.|+|++|++|+++|..|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+..
T Consensus 20 G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~ 97 (149)
T 1a25_A 20 GRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD 97 (149)
T ss_dssp CEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGG
T ss_pred eEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCC
Confidence 3456677774 588999999999999999999999999999963 689999999999999999999998754334
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEE
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 394 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI 394 (776)
..|.|+|||+|.++ |++||++.++|.++..+ ..+.|++|.+.+.|++
T Consensus 98 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~ 145 (149)
T 1a25_A 98 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY 145 (149)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence 68999999999986 99999999999999875 4789999987655554
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=161.23 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=99.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~--~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
....|+|+|++|++|+++|..|.+||||++++.+ +.++|+++++|+||+|||+|.|.+... +.|.|+|||+|.++
T Consensus 3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~ 79 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIH 79 (132)
T ss_dssp SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTT
T ss_pred CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCC
Confidence 3568999999999999999999999999999975 889999999999999999999999753 35999999999875
Q ss_pred ----CCceeEEEEecCcc-cCCCccceeeecCCC-------CceEEEEEEEE
Q 004056 361 ----DDTLGDCTINISDL-RDGQRHDMWIPLQNI-------KIGRLHLAITV 400 (776)
Q Consensus 361 ----Dd~LG~v~I~L~~L-~~~~~~~~W~~L~~~-------~~GeI~LsL~~ 400 (776)
|++||++.++|..+ ........|++|... ..|+|++++++
T Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 79999999999988 333444678888653 27999999875
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=162.54 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=102.8
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEe-eccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~-G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~ 345 (776)
+...+++.|....+.|.|+|++|++|+++|.. |.+||||++++.+ ++++|+++++|+||+|||+|.|. +...+ .
T Consensus 9 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~ 88 (138)
T 1ugk_A 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ 88 (138)
T ss_dssp CEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGG
T ss_pred EEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhc
Confidence 45678999999999999999999999999985 8999999999964 79999999999999999999995 65422 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCc-cceeeecCCCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR-HDMWIPLQNIK 390 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~-~~~W~~L~~~~ 390 (776)
...|.|+|||+|.++ |++||++.++|.++..+.. ...|++|+..+
T Consensus 89 ~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 89 ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred cCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 358999999999986 9999999999999987644 46779998643
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.7e-19 Score=165.81 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=102.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+..++++.|....+.|.|+|++|++|+++|.+| +||||++++.+ .+++|+++++|+||+|||+|.|.+...+ .
T Consensus 11 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 89 (142)
T 2dmg_A 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQ 89 (142)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHH
T ss_pred ceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhC
Confidence 446789999999999999999999999999989 99999999953 6889999999999999999999986422 1
Q ss_pred CCEEEEEEeecCCCC---CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 346 PNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~---Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
...|.|+|||+|.++ +++||++.++|.++..+.....|++|.+.
T Consensus 90 ~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 90 RRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp HCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred cCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 248999999999874 46999999999999887788999999864
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=166.62 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCC-CCC------CCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeec
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPS-DLN------GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 341 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~-D~~------G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~ 341 (776)
+..++++.|.+..+.|.|+|++|++|+.+ |.+ |.+||||++++.+ ++++|+++++|+||+|||+|.|.+.
T Consensus 13 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 92 (147)
T 2enp_A 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIP 92 (147)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCC
T ss_pred eEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeC
Confidence 45689999999999999999999999984 443 5899999999974 6889999999999999999999986
Q ss_pred cCC-CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 342 TWD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 342 ~~e-~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
..+ ....|.|+|||+|.++ +++||++.++|.++........|+.|++.
T Consensus 93 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 142 (147)
T 2enp_A 93 FLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS 142 (147)
T ss_dssp HHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred hHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence 422 1258999999999987 89999999999999887777899999864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-19 Score=169.31 Aligned_cols=116 Identities=28% Similarity=0.469 Sum_probs=101.0
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe--------------EEEeeeecCCCCCcceeeEE
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY--------------RFRTKTQRKTLSPKWHEEFN 337 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~--------------~~kTkvikkTlNP~WnEtF~ 337 (776)
+...+++.|. .|.|.|+|++|++|+++|.+|.+||||++++.+. +++|+++++|+||+|||+|.
T Consensus 7 G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~ 84 (142)
T 1rh8_A 7 GEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84 (142)
T ss_dssp CEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEE
T ss_pred eEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEE
Confidence 3456788887 6899999999999999999999999999999762 57999999999999999999
Q ss_pred Ee-eccCC-CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 338 IP-ISTWD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 338 f~-V~~~e-~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
|. +...+ ....|.|+|||+|.++ +++||++.++|.++..+...+.|++|.+.
T Consensus 85 f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 85 YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp ECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred ECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 97 54211 2468999999999986 99999999999999877778899999874
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.3e-18 Score=168.22 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=100.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~-~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~ 345 (776)
+...+++.| ..+.|.|+|++|++|+++|. +|.+||||++++.+ .+++|+++++|+||+|||+|.|.+.. .
T Consensus 19 G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~ 94 (171)
T 2q3x_A 19 GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP--Q 94 (171)
T ss_dssp CEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC--T
T ss_pred cEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC--C
Confidence 456788888 68999999999999999995 79999999999964 38899999999999999999999864 3
Q ss_pred CCEEEEEEe-ecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 346 PNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 ~~~L~V~Vy-D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
...|.|+|| |+|.++ |++||++.++|.++..+...+.|++|.+.
T Consensus 95 ~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 95 GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 478999999 999987 89999999999999988889999999864
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=160.47 Aligned_cols=112 Identities=25% Similarity=0.396 Sum_probs=95.5
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
...+++.|....+.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus 4 ~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~ 83 (138)
T 3n5a_A 4 ELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRE 83 (138)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCc
Confidence 45788999999999999999999999999999999999999964 5789999999999999999999987532 13
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeec
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 386 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L 386 (776)
..|.|+|||+|.++ |++||++.++|.++. .....|++|
T Consensus 84 ~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l 122 (138)
T 3n5a_A 84 TTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDM 122 (138)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHH
T ss_pred eEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHH
Confidence 57999999999986 999999999999753 223445544
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-18 Score=163.73 Aligned_cols=118 Identities=25% Similarity=0.375 Sum_probs=101.4
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~- 345 (776)
+...+++.|.+..+.|.|+|++|+||+++|.+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+.
T Consensus 12 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 91 (159)
T 1tjx_A 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 91 (159)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhC
Confidence 456789999999999999999999999999999999999999963 47899999999999999999999874322
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcc------------cCCCccceeeecCCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDL------------RDGQRHDMWIPLQNI 389 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L------------~~~~~~~~W~~L~~~ 389 (776)
...|.|+|||+|.++ |++||++.++|..+ ..+.....|+.|.+.
T Consensus 92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 92 KVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred CcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 357999999999987 99999999999964 223456788888763
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.9e-18 Score=163.79 Aligned_cols=115 Identities=29% Similarity=0.406 Sum_probs=99.2
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+...+++.|....+.|.|+|++|++|+++|.+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+ .
T Consensus 24 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 103 (166)
T 2cm5_A 24 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA 103 (166)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred ceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcC
Confidence 456789999999999999999999999999999999999999975 6899999999999999999999987432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
...|.|+|||+|.++ |++||++.++|.++. .....|++|..
T Consensus 104 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~ 145 (166)
T 2cm5_A 104 KKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLK 145 (166)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHh
Confidence 458999999999987 999999999999863 23455666554
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-18 Score=167.54 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=100.6
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~- 360 (776)
...+.|+|+|++|++|++.+..+.+||||++++++++++|+++++|+||+|||+|.|.+.. ...|.|+|||+|.++
T Consensus 33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~~~~ 109 (173)
T 2nq3_A 33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKS 109 (173)
T ss_dssp SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSC
T ss_pred CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCCCCC
Confidence 3578999999999999944334459999999999999999999999999999999999853 578999999999986
Q ss_pred CCceeEEEEecCcccCCC-----ccceeeecCCC-----CceEEEEEEEEEec
Q 004056 361 DDTLGDCTINISDLRDGQ-----RHDMWIPLQNI-----KIGRLHLAITVLEE 403 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~~-----~~~~W~~L~~~-----~~GeI~LsL~~~~~ 403 (776)
|++||++.++|.++..+. ....|++|... ..|+|++.++|++.
T Consensus 110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 999999999999986432 13679999753 37999999999875
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-18 Score=161.64 Aligned_cols=115 Identities=21% Similarity=0.276 Sum_probs=92.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~- 345 (776)
+...+++.|.+..+.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+.
T Consensus 17 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 96 (153)
T 1w15_A 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLE 96 (153)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSST
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhC
Confidence 446788999999999999999999999999999999999999943 27899999999999999999999875432
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
...|.|+|||+|.++ |++||++.++|.+ .+.....|+.|..
T Consensus 97 ~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 138 (153)
T 1w15_A 97 EISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD 138 (153)
T ss_dssp TEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred ceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence 357999999999986 9999999999998 3344566666654
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=175.74 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=127.7
Q ss_pred Cc-eEEEEEeeccccCCccc-cCcchHHHHHHHHHHHhhhcccC-----C--ceeeecccccCCCCCCcee---------
Q 004056 215 PP-YFQMTVKPIFTHGLDVT-EFPGIAGWLDKLLSIAFEQTLVE-----P--NMLVVDVDKFASPQPGNWF--------- 276 (776)
Q Consensus 215 ~P-~idf~lkpl~~~G~dV~-~iPgLs~~I~~~I~~~l~~~LV~-----P--n~l~Idl~~~~s~~~~~~f--------- 276 (776)
.| .|+|.+.||. ++. ..+--...|+..|.+++...-.. | |-... +. +....+.
T Consensus 314 ~P~~I~~~l~PI~----~Lv~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~~~-l~----g~~C~C~C~~~~~t~~ 384 (540)
T 3nsj_A 314 NPGLVDYSLEPLH----TLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHK-SS----HDSCQCECQDSKVTNQ 384 (540)
T ss_dssp SCEEEEEEEEEGG----GGSCTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTEEE-CS----SCTTCEEESCTTTBCG
T ss_pred CCceEEEEEEEHH----HhcCCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCCcc-CC----CCceEeeCCCCCCccc
Confidence 55 4999999982 222 23556778888888888765433 3 11111 11 1111100
Q ss_pred -eeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEee
Q 004056 277 -SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (776)
Q Consensus 277 -sL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD 355 (776)
...-....|.|+|+|++|++|+. |.+|++||||+|+++.+++||+++++++||+|||+|.|.+...+..+.|+|+|||
T Consensus 385 ~~C~~~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D 463 (540)
T 3nsj_A 385 DCCPRQRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD 463 (540)
T ss_dssp GGCBSSTTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEE
T ss_pred ccccccCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEE
Confidence 01112347899999999999998 9999999999999999999999999999999999999986543346789999999
Q ss_pred cCCCC-CCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEE
Q 004056 356 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 356 ~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
+|..+ ||+||++.++|.. +.++.|+.|. .|.|++++++.
T Consensus 464 ~D~~~~dD~LG~~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~ 503 (540)
T 3nsj_A 464 ADYGWDDDLLGSCDRSPHS----GFHEVTCELN---HGRVKFSYHAK 503 (540)
T ss_dssp CCSSSCCEEEEEEEECCCS----EEEEEEEECS---SSEEEEEEEEE
T ss_pred CCCCCCCCEEEEEEEEeeC----CcEEEEEEcC---CeEEEEEEEEE
Confidence 99987 8999999999882 4477899877 59999988754
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=178.15 Aligned_cols=119 Identities=27% Similarity=0.491 Sum_probs=106.7
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~- 360 (776)
...|.|.|+|++|++|+++|.+|.+||||++++++++++|+++++|+||.|||+|.|.+... ....|.|+|||+|.++
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~-~~~~l~~~v~d~d~~~~ 462 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL-YQDVLCLTLFDRDQFSP 462 (510)
T ss_dssp --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCT-TTCEEEEEEEECCSSSS
T ss_pred CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCC-CCCEEEEEEEeCCCCCC
Confidence 45789999999999999999999999999999999999999999999999999999999753 3468999999999987
Q ss_pred CCceeEEEEecCcccCCCc----cceeeecCCCCceEEEEEEEEE
Q 004056 361 DDTLGDCTINISDLRDGQR----HDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~~~----~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
|++||++.++|.++..+.. ...|+.|.+...|+|++++.+.
T Consensus 463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ 507 (510)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence 9999999999999876543 6789999998899999988764
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=154.81 Aligned_cols=116 Identities=26% Similarity=0.390 Sum_probs=98.4
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-C
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-P 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~ 346 (776)
...+++.|.+..+.|.|+|++|++|+.+|.+|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+. .
T Consensus 138 ~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 217 (284)
T 2r83_A 138 DICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQK 217 (284)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGG
T ss_pred cEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCc
Confidence 34677888888999999999999999999999999999999853 47899999999999999999999875332 3
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCccc------------CCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~------------~~~~~~~W~~L~~ 388 (776)
..|.|+|||+|.++ +++||++.++|..+. .+....+|+.|.+
T Consensus 218 ~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 218 VQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred eEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 47999999999987 999999999998642 2345578888875
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=137.38 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=73.2
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvik-kTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~- 360 (776)
..+.|.|+|++|++|+. .|.+||||+++ .+..+|++++ +|+||.|||+|.|.+... ...|.|+|||+| ++
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-~~~ 74 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-LIW 74 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC--SSEEEEEEEECC-SSC
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC--CCeEEEEEEECC-CCC
Confidence 46899999999999853 68899999999 3445666655 699999999999999853 457999999999 65
Q ss_pred CCceeEEEEecCcccCC
Q 004056 361 DDTLGDCTINISDLRDG 377 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~ 377 (776)
|++||++.++|.++...
T Consensus 75 dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 75 DTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp EEEEEEEEEEGGGSCBC
T ss_pred CCeEEEEEEEHHHhhhc
Confidence 99999999999998654
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=138.95 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=101.5
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcceeeEEEeeccC-CCCCEEEEEEeecCCCC
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvik-kTlNP~WnEtF~f~V~~~-e~~~~L~V~VyD~D~~~ 360 (776)
..-.|+|+|.+|.||+ |++|||+++.+.+.+++|++++ +++||+|||.|+|++... +....|.|.|||+++++
T Consensus 19 ~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~ 93 (144)
T 3l9b_A 19 SHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF 93 (144)
T ss_dssp CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred CcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence 3457999999999998 5889999999999999999998 699999999999998853 34568999999999986
Q ss_pred -CCceeEEEEecCcccCCCccceeeecCCCC----ceEEEEEEEEEec
Q 004056 361 -DDTLGDCTINISDLRDGQRHDMWIPLQNIK----IGRLHLAITVLEE 403 (776)
Q Consensus 361 -Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~----~GeI~LsL~~~~~ 403 (776)
+.+||++.++|.++...+....+..|.+.+ .++|+|.++|.+.
T Consensus 94 ~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 94 SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA 141 (144)
T ss_dssp CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence 999999999999999877777777776533 5899999999986
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=139.70 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=74.0
Q ss_pred ceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-
Q 004056 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvik-kTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~- 360 (776)
..+.|+|+|++|++|+ ..|.+||||+++ .+.++|++++ +++||+|||+|.|.+... ...|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~--~~~L~~~V~D~d-~~~ 83 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL--DLGLTVEVWNKG-LIW 83 (167)
T ss_dssp CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT--TSEEEEEEEECC-SSC
T ss_pred ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC--CCEEEEEEEECC-CCC
Confidence 4689999999999884 268899999999 4456777765 699999999999999853 457999999999 65
Q ss_pred CCceeEEEEecCcccCC
Q 004056 361 DDTLGDCTINISDLRDG 377 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~ 377 (776)
|++||++.|+|.++...
T Consensus 84 dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 84 DTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CEEEEEEEEEGGGSCBC
T ss_pred CceEEEEEEEHHHhccc
Confidence 99999999999998654
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-15 Score=157.65 Aligned_cols=104 Identities=26% Similarity=0.390 Sum_probs=91.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~- 345 (776)
+...+++.|.+..|.|.|+|++|++|+++|..|.+||||++++.+ .+++|+++++|+||+|||+|.|.+...+.
T Consensus 139 G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 218 (296)
T 1dqv_A 139 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVE 218 (296)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGG
T ss_pred ceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHcc
Confidence 445688899999999999999999999999999999999999962 57899999999999999999999875321
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCccc
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLR 375 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~ 375 (776)
...|.|+|||+|.++ |++||++.+++..+.
T Consensus 219 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 219 NVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp SCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence 247999999999987 999999999999764
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=168.30 Aligned_cols=112 Identities=25% Similarity=0.431 Sum_probs=100.3
Q ss_pred CceeEEEEEEEEecCCCC---CCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEee
Q 004056 282 EPVAYARVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 355 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~---~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD 355 (776)
.+.+.|+|+|++|++|++ +|..|.+||||++++++ .++||+++++|+||+|||+|.|.+... ....|+|+|||
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D 93 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMD 93 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEE
Confidence 467999999999999999 88889999999999984 689999999999999999999999863 35689999999
Q ss_pred cCCCCCCceeEEEEecCcccCCCccceeeecCCCCceEEEE
Q 004056 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396 (776)
Q Consensus 356 ~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~L 396 (776)
+|.++|++||++.++|.++..+..++.|++|.+. +++.+
T Consensus 94 ~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l 132 (749)
T 1cjy_A 94 ANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL 132 (749)
T ss_dssp CCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred CCCCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence 9998899999999999999988888999999864 45444
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=159.77 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=98.0
Q ss_pred ceeEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCC-CCCcceeeEEEeeccCCCCCEEEEEEe
Q 004056 283 PVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVR 354 (776)
Q Consensus 283 ~~GvL~V~VieA~~L~~~D~--~G~sDPYVkv~Lg~-----~~~kTkvikkT-lNP~WnEtF~f~V~~~e~~~~L~V~Vy 354 (776)
..+.|+|+|++|++|+.++. +|.+||||+|.+.+ .++||++++++ +||+|||+|.|.+...+ ...|+|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e-l~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD-LALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG-GCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC-CCEEEEEEE
Confidence 46899999999999999883 78999999999943 68999999997 99999999999998543 358999999
Q ss_pred ecCCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEE
Q 004056 355 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (776)
Q Consensus 355 D~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~ 401 (776)
|+|.++ |++||++.++|..|..+. .|++|.+.. .|.|++.+++.
T Consensus 574 D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 999986 999999999999998764 588886532 46788887764
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-14 Score=160.24 Aligned_cols=113 Identities=16% Similarity=0.210 Sum_probs=21.5
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCC---CCCcceeeEEEeeccCCCCCEEEEEEeec-CC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKT---LSPKWHEEFNIPISTWDSPNVLVIEVRDK-DH 358 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~-~~kTkvikkT---lNP~WnEtF~f~V~~~e~~~~L~V~VyD~-D~ 358 (776)
.+.|+|+|++|++|+++| ||||+++++++ ..||+++++| +||+|||+|.|.+... ...|.|+|||. |.
T Consensus 10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~ 82 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDK 82 (483)
T ss_dssp EECC--------------------------------------------------CCEECC--------------------
T ss_pred ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCc
Confidence 578999999999999887 99999999874 6799999999 9999999999997532 36899999994 52
Q ss_pred ---C-CCCceeEEEEecCcccCCCccceeeecCCC---------------------------CceEEEEEEEEEec
Q 004056 359 ---F-VDDTLGDCTINISDLRDGQRHDMWIPLQNI---------------------------KIGRLHLAITVLEE 403 (776)
Q Consensus 359 ---~-~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~---------------------------~~GeI~LsL~~~~~ 403 (776)
. +|++||++.|++.++..+...+.|++|.+. ..|.|+|++.|.+.
T Consensus 83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~ 158 (483)
T 3bxj_A 83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTM 158 (483)
T ss_dssp ------------------------CCEECC--------------------------------------CEEEEEEC
T ss_pred cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeee
Confidence 3 499999999999999988888999999431 14889999999875
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=152.78 Aligned_cols=111 Identities=32% Similarity=0.498 Sum_probs=97.3
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
...+.|.|+|++|++|+++|.+|.+||||++++. ..+++|+++++|+||.|||+|.|.+...+....|.|+|||+
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred eccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 3468999999999999999999999999999993 36789999999999999999999998655556899999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCCCCceE
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGR 393 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~Ge 393 (776)
|..+ |++||++.++|.++.... .+.|+.|.....|+
T Consensus 249 d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g~ 285 (674)
T 3pfq_A 249 DLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEGE 285 (674)
T ss_dssp CSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGGG
T ss_pred ccccccccccccccchhhhccCC-cccceeecccccce
Confidence 9997 999999999999988654 58899997755443
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=138.20 Aligned_cols=108 Identities=20% Similarity=0.346 Sum_probs=88.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecC-CCCCccee-eEEEe-eccCCCCCEEEEEEee
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRK-TLSPKWHE-EFNIP-ISTWDSPNVLVIEVRD 355 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkvikk-TlNP~WnE-tF~f~-V~~~e~~~~L~V~VyD 355 (776)
..|.|+|++|++|+.. .+||||+|.+.+ .+++|+++++ ++||+||| +|.|. |...+ ...|+|+|||
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe-la~Lrf~V~D 799 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT-LASLRIAAFE 799 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG-GCEEEEEEEE
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC-cCEEEEEEEc
Confidence 4799999999999863 589999999954 3589999976 59999999 69998 65433 3579999999
Q ss_pred cCCCCCCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEEec
Q 004056 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEE 403 (776)
Q Consensus 356 ~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~~~ 403 (776)
+| +++||++.+||..|..+.+ +++|.+.. .|.|.+.+.+...
T Consensus 800 ~d---ddfiG~~~lpL~~L~~GyR---~vpL~~~~g~~l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 800 EG---GKFVGHRILPVSAIRSGYH---YVCLRNEANQPLCLPALLIYTEASDY 846 (885)
T ss_dssp TT---TEEEEEEEEETTTCCCEEE---EEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred CC---ccEEeeEEEEHHHcCCCce---EEEecCCCCCccCceEEEEEEEEEec
Confidence 87 8999999999999988754 46665532 5788888888764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=134.67 Aligned_cols=109 Identities=18% Similarity=0.342 Sum_probs=88.6
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecC-CCCCcceee-EEEe-eccCCCCCEEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRK-TLSPKWHEE-FNIP-ISTWDSPNVLVIEV 353 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-------~~~kTkvikk-TlNP~WnEt-F~f~-V~~~e~~~~L~V~V 353 (776)
.+.|.|+|++|++|+.+ .+||||+|.+.+ ++++|+++++ ++||+|||+ |.|. +...+ -..|+|.|
T Consensus 649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe-la~Lrf~V 723 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD-LAVVRIIV 723 (816)
T ss_dssp CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG-GCEEEEEE
T ss_pred ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC-ccEEEEEE
Confidence 37899999999999853 589999999954 5789999886 699999998 9998 76433 35899999
Q ss_pred eecCCCCCCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEEec
Q 004056 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEE 403 (776)
Q Consensus 354 yD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~~~ 403 (776)
||++ +++||++.+||..|..|.+ +++|.+.. .+.|.+.+.+...
T Consensus 724 ~D~d---ddfiG~~~ipL~~L~~GyR---~vpL~~~~g~~~~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 724 SEEN---GKFIGHRVMPLDGIKPGYR---HVPLRNESNRPLGLASVFAHIVAKDY 772 (816)
T ss_dssp EETT---SCEEEEEEEESTTCCCEEE---EEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred EecC---CCeeeEEEEEHHHcCCcce---EEEEeCCCCCCCCceEEEEEEEEEec
Confidence 9985 8999999999999998753 56776532 4678888877654
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-10 Score=136.47 Aligned_cols=107 Identities=21% Similarity=0.327 Sum_probs=84.8
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEee-eecC-CCCCccee-eEEE-eeccCCCCCEEEEEE
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTK-TQRK-TLSPKWHE-EFNI-PISTWDSPNVLVIEV 353 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTk-vikk-TlNP~WnE-tF~f-~V~~~e~~~~L~V~V 353 (776)
.+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ ++||+||| +|.| .+...+ -..|+|.|
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e-l~~Lr~~V 751 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVAV 751 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC-ccEEEEEE
Confidence 5789999999999985 4689999999932 368999 7764 69999999 7999 776433 34899999
Q ss_pred eecCCCCCCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEE
Q 004056 354 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (776)
Q Consensus 354 yD~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~ 401 (776)
||+| +++||++.+||..|..+. +|++|.+.. .+.|.+.+.+.
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCCceEEEEEEEEE
Confidence 9997 899999999999998765 466775532 35566666553
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.94 E-value=8e-09 Score=96.16 Aligned_cols=109 Identities=16% Similarity=0.345 Sum_probs=85.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe----EEEe-eeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY----RFRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~----~~kT-kvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
..|+|.+.++.--+-+......||||.+.+... ..+| .+.++|..|.|||+|.-.+.+ ++.|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT---TCEEEEEEEEETT-
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC---CEEEEEEEEcCCC-
Confidence 568888866553221223346899999998652 2355 677889999999999999985 5789999997655
Q ss_pred CCCceeEEEEecCccc-----CCCccceeeecCCCCceEEEEEEEEE
Q 004056 360 VDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVL 401 (776)
Q Consensus 360 ~Dd~LG~v~I~L~~L~-----~~~~~~~W~~L~~~~~GeI~LsL~~~ 401 (776)
+|+..|+|++.+|. .+...+.|++|++ .|+|++.+.|.
T Consensus 82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF 124 (126)
T ss_dssp --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence 99999999999997 4456799999996 89999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=96.40 Aligned_cols=111 Identities=17% Similarity=0.358 Sum_probs=87.8
Q ss_pred eeEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-e---EEEe-eeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 284 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-Y---RFRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D-~~G~sDPYVkv~Lg~-~---~~kT-kvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
.+.|+|.+.++.-.+-+. ..-..||||.+.+.. . ..+| .+.++|..|+|||+|.-.+.+ .+.|.|.||+..
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a 85 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK---GRVMQIIVKGKN 85 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS---SCEEEEEEECSS
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC---CeEEEEEEEcCC
Confidence 456888887766433222 134689999999865 2 2677 677789999999999999985 578999999655
Q ss_pred CCCCCceeEEEEecCccc-----CCCccceeeecCCCCceEEEEEEEEEe
Q 004056 358 HFVDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 358 ~~~Dd~LG~v~I~L~~L~-----~~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
. +|+..|+|++.+|. .+...+.|++|++ .|+|++.+.|.-
T Consensus 86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~~ 130 (138)
T 2enj_A 86 V---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYFL 130 (138)
T ss_dssp C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred C---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEEE
Confidence 4 99999999999998 4456799999996 899999999853
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-08 Score=94.84 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=72.5
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE-Ee-cCC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW-VH-QPG 482 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~-~pg 482 (776)
.+|||+++++. ..+++..++||.+.+++.||+||+.+.+.++..........+.+++.+.. .+- |-. +. ...
T Consensus 36 ~~dpyv~v~~~---~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 36 TSDPYVKVWLM---YKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112 (138)
T ss_dssp BCCEEEEEEEE---ETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred CcCeEEEEEEE---eCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence 57999999984 33445667899999999999999988888876665556678888888733 222 433 32 233
Q ss_pred cccccccccccCCCCCccceEeec
Q 004056 483 SEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 483 ~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
....+||.++..+++++.++||..
T Consensus 113 ~~~~~~W~~l~~~~~~~~~~Wh~L 136 (138)
T 3n5a_A 113 PGEVKHWKDMIARPRQPVAQWHQL 136 (138)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred ChHHHHHHHHHhCCCCeEEEEeec
Confidence 344599999999999999999964
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-08 Score=93.97 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee-cCC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH-QPG 482 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~-~pg 482 (776)
.+|||+++++. ..+++..++||.+.+++.||+||+.+.+.++..+.......+.+++.+. ..+- |-. +. ...
T Consensus 50 ~~dpyv~v~~~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~ 126 (153)
T 1w15_A 50 LSDPYVKVNLY---HAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 126 (153)
T ss_dssp CCCEEEEEEEE---ETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred CCCeEEEEEEE---eCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence 47999999883 3455556789999999999999999988888776666677888898873 2222 443 22 112
Q ss_pred cccccccccccCCCCCccceEeecC
Q 004056 483 SEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 483 ~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
.....||.+++.+|+.++++||..-
T Consensus 127 ~~~~~~W~~l~~~p~~~~~~Wh~L~ 151 (153)
T 1w15_A 127 GSGGGHWKEICDFPRRQIAKWHMLC 151 (153)
T ss_dssp SHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred chHHHHHHHHHhCCCCeeeeccccc
Confidence 2335999999999999999999754
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-07 Score=90.71 Aligned_cols=99 Identities=16% Similarity=0.124 Sum_probs=73.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCe--eee-eEE-Eec-C
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW-VHQ-P 481 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~~-p 481 (776)
..+|||+++++. ..+++..++||.+.+++.||+||+.+.+.++..+.......+.+++.+.. .+- |-. +.- .
T Consensus 44 g~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 44 GLSDPYVKIHLM---QNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp SCCCEEEEEEEE---ETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred CCCCeEEEEEEE---eCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCC
Confidence 357999999883 34555667899999999999999998888876665556677888888742 222 433 332 1
Q ss_pred CcccccccccccCCCCCccceEeecCC
Q 004056 482 GSEVAQTWEPRKGKNRRLDTLVRRVPN 508 (776)
Q Consensus 482 g~~~~~~W~~~~~~~r~~~~q~~~~~~ 508 (776)
-+...+||.+++..++.+.++||..-.
T Consensus 121 ~~~~~~~w~~l~~~~~~~~~~W~~L~~ 147 (159)
T 1tjx_A 121 TGAELRHWSDMLANPRRPIAQWHTLQV 147 (159)
T ss_dssp CHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence 123359999999999999999997654
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-07 Score=88.15 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=80.9
Q ss_pred CceEEEEEEEEEec------------CC-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 390 KIGRLHLAITVLEE------------SA-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 390 ~~GeI~LsL~~~~~------------~~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..|+|++++.|.+. ++ ...+|||+++++. ..+.+..++||.+.+++.||+||+.+.+.++
T Consensus 22 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 98 (166)
T 2cm5_A 22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLK---PDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98 (166)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE---TC---CCEEECCCCCSCSSCEEEEEEEEECC
T ss_pred ccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEE---CCCCccceEeCCcccCCCCCcccceEEEEcc
Confidence 35777777776543 11 2357999999984 2334456789999999999999999888887
Q ss_pred CCCCCCCCCceEEEEecCe--eee-eEE-Eec-CCcccccccccccCCCCCccceEeecC
Q 004056 453 SEKSPKVADNFEPINIEGQ--QET-GIW-VHQ-PGSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~~-pg~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
..+.......+.+++.+.. .+- |.. +.- .-....+||.++..+++.+.++||..-
T Consensus 99 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~ 158 (166)
T 2cm5_A 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ 158 (166)
T ss_dssp GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred hHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECC
Confidence 6665566778888888733 222 443 331 222345899999999999999999765
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=74.62 Aligned_cols=85 Identities=7% Similarity=-0.069 Sum_probs=57.7
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--~ 480 (776)
..+|||+++++... .+.+..++||.+++++.||+||+.+.+.++..+.......+.+++++. ..+- |-. +. .
T Consensus 62 g~sDPyVkv~l~~~--~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~ 139 (155)
T 2z0u_A 62 QDQKVNIRVAVLPC--SESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE 139 (155)
T ss_dssp CCSEEEEEEEEESC--SCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTT
T ss_pred CCCCEEEEEEEecC--CCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHH
Confidence 45899999998421 223344789999999999999999988887655555677889999983 3332 433 22 1
Q ss_pred --CCccccccccccc
Q 004056 481 --PGSEVAQTWEPRK 493 (776)
Q Consensus 481 --pg~~~~~~W~~~~ 493 (776)
+.+....+|.+++
T Consensus 140 l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 140 VCRSGERSTRWYNLL 154 (155)
T ss_dssp SCTTCCCEEEEEEEB
T ss_pred ccCCCCccccceEcc
Confidence 2234446776653
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0001 Score=69.06 Aligned_cols=61 Identities=10% Similarity=0.119 Sum_probs=48.4
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...+|||+++++.. .. ...++||.+++++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 41 ~g~sDPyv~v~l~~---~~-~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~ 101 (138)
T 1wfm_A 41 DGGCDCYVQGSVAN---RT-GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR 101 (138)
T ss_dssp SSCCCEEEEEEEEE---TT-EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred CCCcceEEEEEEEc---CC-CcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence 34689999998831 11 224678999999999999999998888777777778899999873
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00011 Score=68.66 Aligned_cols=85 Identities=15% Similarity=0.072 Sum_probs=59.0
Q ss_pred CCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--ee-e-e-eEE-Ee--c
Q 004056 409 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQ-E-T-GIW-VH--Q 480 (776)
Q Consensus 409 ~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~-~-~-gv~-~~--~ 480 (776)
+|||+++++. ..+++..++||.+.+++.||+||+.+.+.++..+.......+.+++.+. .. + - |-. +. .
T Consensus 44 ~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~ 120 (142)
T 2dmg_A 44 SDPYVRMYLL---PDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALAS 120 (142)
T ss_dssp CCEEEEEEEE---SCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCC
T ss_pred CCeeEEEEEE---cCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEeccc
Confidence 7999999983 3455567889999999999999999888876555444567788888873 21 2 2 443 22 1
Q ss_pred -CCcccccccccccCCC
Q 004056 481 -PGSEVAQTWEPRKGKN 496 (776)
Q Consensus 481 -pg~~~~~~W~~~~~~~ 496 (776)
.......+|.++....
T Consensus 121 ~~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 121 EELAKGWTQWYDLTEDS 137 (142)
T ss_dssp STTTTCBCCBCCCBCSC
T ss_pred ccccccccceeeccCCC
Confidence 1122457888887654
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00021 Score=67.51 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=49.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ..+++..++||.+++++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 43 ~~~dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~ 103 (148)
T 3fdw_A 43 KRSNPYVKTYLL---PDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGR 103 (148)
T ss_dssp TBCCEEEEEEEE---TCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECG
T ss_pred CCCCeEEEEEEE---cCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCC
Confidence 357999999983 3455566889999999999999999888888777666677888998873
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00035 Score=64.88 Aligned_cols=61 Identities=5% Similarity=-0.083 Sum_probs=46.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecCe
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G~ 471 (776)
.+|||+++++. ..+....++||.+.+++.||+||+.+.+. ++..+.......+.+++.+..
T Consensus 41 ~~dpyv~v~~~---~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~ 102 (141)
T 1v27_A 41 PRNPYVKIYFL---PDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 102 (141)
T ss_dssp CCCEEEECCCS---SCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSS
T ss_pred CCCCEEEEEEe---cCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCC
Confidence 47999999883 33344567899999999999999988887 455555566778888888743
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00052 Score=63.89 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=58.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecCe--eee-eEE-Ee--
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEGQ--QET-GIW-VH-- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G~--~~~-gv~-~~-- 479 (776)
..+|||+++++.. .++ .++||.+.+++.||+||+.+.+. ++..+.......+.+++.+.- .+- |-. +.
T Consensus 42 ~~~dpyv~v~~~~---~~~--~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~ 116 (138)
T 1ugk_A 42 MTSDPYIKMTILP---EKK--HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116 (138)
T ss_dssp TBCEEEEEEEEET---TTC--SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECT
T ss_pred CCCCCEEEEEEec---CCC--ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehh
Confidence 4579999998842 222 57899999999999999988874 777666666778888888732 222 433 22
Q ss_pred --cCCcccccccccccCCC
Q 004056 480 --QPGSEVAQTWEPRKGKN 496 (776)
Q Consensus 480 --~pg~~~~~~W~~~~~~~ 496 (776)
..+.+....|.+++.++
T Consensus 117 ~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 117 GIELSEGKMLMNREIISGP 135 (138)
T ss_dssp TCCCTTCCEEEEEECBSSS
T ss_pred HccCCCCcchhhhhhhcCC
Confidence 23334345667777665
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0002 Score=67.02 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=55.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC--eeee-eEE-Ee--
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG--QQET-GIW-VH-- 479 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~-- 479 (776)
..+|||+++.+. ..+.+..++||.+.+++.||+||+.+.+. ++..+.......+.+++.+. ..+- |-. +.
T Consensus 48 g~~dpyv~v~~~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~ 124 (142)
T 2chd_A 48 GLADPYVKLHLL---PGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK 124 (142)
T ss_dssp SCCCEEEEEEEE---SCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGG
T ss_pred CCCCCEEEEEEE---cCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHH
Confidence 357999999984 33445567899999999999999987776 55444434567788888873 2222 433 22
Q ss_pred cCCcccccccccccCCC
Q 004056 480 QPGSEVAQTWEPRKGKN 496 (776)
Q Consensus 480 ~pg~~~~~~W~~~~~~~ 496 (776)
.-..+...+|.-++.+|
T Consensus 125 ~l~~~~~~~~~~~L~~p 141 (142)
T 2chd_A 125 KLKANQRKNFNICLERV 141 (142)
T ss_dssp GCCTTCCEEEEEECBCC
T ss_pred HcCCCCccEEEEecccC
Confidence 11112246666655543
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00033 Score=66.69 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=55.4
Q ss_pred CceEEEEEEEEEecC------------C----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCC
Q 004056 390 KIGRLHLAITVLEES------------A----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 453 (776)
Q Consensus 390 ~~GeI~LsL~~~~~~------------~----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~ 453 (776)
..|+++|+|+|.+.. + ...+|||+++++. ..++...++||.+.+++.||+||+.+.+.++.
T Consensus 12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 88 (153)
T 3fbk_A 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLI---PEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88 (153)
T ss_dssp -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEE---SCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEE---cCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence 356676666665541 1 2357999999984 34445578899999999999999998888866
Q ss_pred CCCCCCCCceEEEEecC
Q 004056 454 EKSPKVADNFEPINIEG 470 (776)
Q Consensus 454 ~~~~~~~d~~~vi~~~G 470 (776)
.+.... ..+.+++.+.
T Consensus 89 ~~~~~~-L~i~V~d~d~ 104 (153)
T 3fbk_A 89 EDDQKR-LLVTVWNRAS 104 (153)
T ss_dssp GGTTSE-EEEEEEECCS
T ss_pred HHhCCE-EEEEEEeCCC
Confidence 555433 7788888874
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00043 Score=63.39 Aligned_cols=61 Identities=3% Similarity=-0.111 Sum_probs=44.5
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecCe
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ 471 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G~ 471 (776)
.+|||+++.+. ..+....++||.+.+++.||+||+.+.+.+ +..+.......+.+++.+..
T Consensus 38 ~~dpyv~v~~~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~ 99 (129)
T 2bwq_A 38 PRNPYVKIYFL---PDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 99 (129)
T ss_dssp CBCEEEEEEEE---SSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC---
T ss_pred CCCCEEEEEEe---cCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcC
Confidence 47999999884 334445678999999999999999888874 44444556677888888743
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0004 Score=65.92 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=54.2
Q ss_pred CceEEEEEEEEEec------------CC-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 390 KIGRLHLAITVLEE------------SA-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 390 ~~GeI~LsL~~~~~------------~~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..|+|++++.|.+. ++ ...+|||+++++.. .++ .++||.+.+++.||+||+.+.+.++
T Consensus 27 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~--~~~kT~v~~~t~nP~wne~f~f~v~ 101 (152)
T 1rsy_A 27 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP---DKK--KKFETKVHRKTLNPVFNEQFTFKVP 101 (152)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEET---TCC--SCEECCCCTTCSSCEEEEEEEECCC
T ss_pred CceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEc---CCC--ceEeccccCCCCCCcCcccEEEeec
Confidence 35777777766442 11 23479999998842 222 4688999999999999998888877
Q ss_pred CCCCCCCCCceEEEEecC
Q 004056 453 SEKSPKVADNFEPINIEG 470 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G 470 (776)
..+.......+.+++.+.
T Consensus 102 ~~~l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 102 YSELGGKTLVMAVYDFDR 119 (152)
T ss_dssp HHHHTTCEEEEEEEECCS
T ss_pred HHHcCCCEEEEEEEECCC
Confidence 555455667788888874
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00082 Score=62.83 Aligned_cols=58 Identities=9% Similarity=-0.036 Sum_probs=44.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
.+|||+++++. ..++ +++||.+.+++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 54 ~~dpyv~v~l~---~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~ 111 (143)
T 3f04_A 54 TSDPYVKVFLL---PDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR 111 (143)
T ss_dssp CCCEEEEEEEE---SCCS--CCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred CcCcEEEEEEE---CCCC--ccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence 57999999883 2222 4789999999999999998888877655555667788888874
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0014 Score=61.01 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=48.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ..++...++||.+.+++.||+||+.+.+. ++..+.......+.+++.+.
T Consensus 38 g~~DPyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~ 99 (134)
T 2b3r_A 38 ADPNPYVKTYLL---PDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAES 99 (134)
T ss_dssp CCCCEEEEEEEE---SCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCS
T ss_pred CCCCeEEEEEEE---cCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCC
Confidence 467999999984 34445677899999999999999988887 76655556677888888873
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00062 Score=64.06 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=43.2
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.+|||+++++.. .++ .++||.+++++.||+||+.+.+.++..+.......+.+++.+
T Consensus 53 ~~dpyv~v~l~~---~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d 109 (147)
T 2enp_A 53 HSNPYVKICLLP---DQK--NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD 109 (147)
T ss_dssp CCCCEEEEEEET---CCS--SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCS
T ss_pred CCCcEEEEEEEe---CCC--cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECC
Confidence 579999998842 222 467999999999999999888887654444445677888876
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0014 Score=60.98 Aligned_cols=64 Identities=11% Similarity=0.016 Sum_probs=45.5
Q ss_pred ccCCCcccccccccCC------CCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGM------GNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~------~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++..... ++.+..++||.+.+++.||+||+.+.+. ++.++.......+.+++.+.
T Consensus 37 g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~ 107 (142)
T 1rh8_A 37 GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDR 107 (142)
T ss_dssp SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECS
T ss_pred CCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCC
Confidence 4579999998842200 0112356899999999999999988876 66555455667888888874
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0019 Score=60.24 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=42.8
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccC-CCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~L-p~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++.. .++ .++||.+.+++.||+||+.+.+.+ +.++.......+.+++.+.
T Consensus 45 g~~dpyv~v~~~~---~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 104 (141)
T 2d8k_A 45 GTSDPFVKIYLLP---DKK--HKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR 104 (141)
T ss_dssp SCCCEEEEEEEES---CCS--SEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred CCCCcEEEEEEEC---CCC--ccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence 3579999998842 122 467899999999999999888774 4444445566788888873
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0051 Score=59.63 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=43.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEE-Eec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi-~~~ 469 (776)
..+|||+++++. ..+++..++||.+++++.||+||+.+.+.++.. .....+.++ +.+
T Consensus 50 g~~DPyv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~L~~~V~~d~d 107 (171)
T 2q3x_A 50 STPAPYVKVYLL---ENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ---GKVLQVIVWGDYG 107 (171)
T ss_dssp CCCEEEEEEEEE---ETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT---TEEEEEEEEEECS
T ss_pred CCCCceEEEEEE---CCCccccceeCccCCCCCCCCCCcEEEEEecCC---CCEEEEEEEEcCC
Confidence 457999999984 345555688999999999999999888887532 345677778 776
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0063 Score=57.27 Aligned_cols=60 Identities=12% Similarity=0.004 Sum_probs=44.5
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++++. ..++...++||.+.+++.||+||+.+.+.+...+. .....+.+++.+.
T Consensus 50 g~~dpyv~v~~~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~d~ 109 (149)
T 1a25_A 50 GLSDPYVKLKLI---PDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDL 109 (149)
T ss_dssp SCCCEEEEEEEE---SCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEECCS
T ss_pred CCcCeEEEEEEE---CCCCCcceEecceeCCCCCCcCCcEEEEEeccccC-CCEEEEEEEECCC
Confidence 457999999984 23444567899999999999999988888764332 2346777888763
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=94.52 E-value=0.06 Score=48.66 Aligned_cols=57 Identities=5% Similarity=-0.052 Sum_probs=42.0
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++.+. +....++||.+.+++.||+||+.+.+.+.... .....+.+++.+.
T Consensus 25 g~~dpyv~v~~~-----~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 25 DTPDPYVELFIS-----TTPDSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLMDANY 81 (126)
T ss_dssp CCCCEEEEEECT-----TSTTCCEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEEEECCS
T ss_pred CCCCCEEEEEEc-----cCCCceEEccccCCCCCCcccceEEEEecCCC--CCEEEEEEEECCC
Confidence 457999999883 21235789999999999999998888774332 3456777888763
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.055 Score=49.93 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=49.6
Q ss_pred CceEEEEEEEEEec----CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCC-CCCCCceE
Q 004056 390 KIGRLHLAITVLEE----SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKS-PKVADNFE 464 (776)
Q Consensus 390 ~~GeI~LsL~~~~~----~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~-~~~~d~~~ 464 (776)
..|.|++.+.--.. .. ...|||+++.+. + .++||.+.+++.||+||+.+.+.+..... ......+.
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~ 75 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFK-----D---EKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGII 75 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECS-----S---CEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEE
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC-----C---EeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEE
Confidence 35777666532211 22 568999999883 2 25899999999999999998888765433 34556777
Q ss_pred EEEec
Q 004056 465 PINIE 469 (776)
Q Consensus 465 vi~~~ 469 (776)
+++.+
T Consensus 76 V~d~d 80 (140)
T 2dmh_A 76 VKDFE 80 (140)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 88876
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.1 Score=48.31 Aligned_cols=102 Identities=13% Similarity=0.030 Sum_probs=50.4
Q ss_pred eEEEEEEEEEec-CCCccCCCcccccccccCCCCcccccccce-eecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 392 GRLHLAITVLEE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKED-IRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 392 GeI~LsL~~~~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~-vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
|.|++.+.--.. .....+|||+++.. .+.||. +++++.||+||+.+.+.++.. .....+.++|.+
T Consensus 5 ~~L~V~V~~A~~l~~~g~~DPYv~v~~----------~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d 71 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGAQEKFNTYVTLKV----------QNVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG 71 (131)
T ss_dssp EEEEEEEEEEECSSCGGGCEEEEEEEE----------TTEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEECC
T ss_pred eEEEEEEEEeECCCCCCCcCeEEEEEe----------cCEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEECC
Confidence 555554432111 12356899999862 123343 345789999999988887632 234677888876
Q ss_pred Ceeee--eEE-Ee-----cCCcccccccccccCCCCCccceEeec
Q 004056 470 GQQET--GIW-VH-----QPGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 470 G~~~~--gv~-~~-----~pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
...+. |-. +. ..+.+...+|.++.-+.++++.++.++
T Consensus 72 ~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~ 116 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGT 116 (131)
T ss_dssp SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CC
T ss_pred CCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcce
Confidence 22222 433 21 222222246776665555555444444
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.074 Score=48.67 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=46.6
Q ss_pred EEEEEEEEEec-CC-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEE
Q 004056 393 RLHLAITVLEE-SA-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 466 (776)
Q Consensus 393 eI~LsL~~~~~-~~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi 466 (776)
.+.|.+++..+ ++ ...+|||+++++... + .++||.+.+++.||+||+.+.+.+...+ ...+.++
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~---~~~kT~v~~~t~nP~wne~f~f~v~~~~----~l~~~v~ 73 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---G---QCHSTDTVKNTLDPKWNQHYDLYVGKTD----SITISVW 73 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---C---CEEECCCCSSCSSCEEEEEEEEEEETTC----CEEEEEE
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---C---ceEECCccCCCCCCCccCEEEEEeCCCC----EEEEEEE
Confidence 34556665655 22 235799999988321 1 4689999999999999998777664322 3677788
Q ss_pred EecC
Q 004056 467 NIEG 470 (776)
Q Consensus 467 ~~~G 470 (776)
+.+.
T Consensus 74 d~d~ 77 (132)
T 3pyc_A 74 NHKK 77 (132)
T ss_dssp EGGG
T ss_pred ECCC
Confidence 8763
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.09 Score=50.79 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=50.1
Q ss_pred CceEEEEEEEEEec----CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEE
Q 004056 390 KIGRLHLAITVLEE----SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP 465 (776)
Q Consensus 390 ~~GeI~LsL~~~~~----~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~v 465 (776)
..|.|++.+.--.. .....+|||+++.+.. ..++...++||.+.+++.||+||+.+.+.+.... ....+.+
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~--~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~L~~~V 80 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYD--PMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQR---HRILFEV 80 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEE--TTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTT---CEEEEEE
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEEC--CCCCcccceeCceECCCCCCcccceEEEEEcCCC---CEEEEEE
Confidence 46777666532111 1224689999998842 2333446789999999999999998888776322 3456777
Q ss_pred EEec
Q 004056 466 INIE 469 (776)
Q Consensus 466 i~~~ 469 (776)
++.+
T Consensus 81 ~d~d 84 (176)
T 3m7f_B 81 FDEN 84 (176)
T ss_dssp EECC
T ss_pred EECC
Confidence 7765
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.059 Score=51.99 Aligned_cols=52 Identities=6% Similarity=0.024 Sum_probs=38.1
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+. +. +..||.+++++.||+||+.+.+.++. .....+.+++.+
T Consensus 58 g~sDPYv~v~l~-----~~--~~~kT~v~~ktlnP~WNE~F~f~v~~----~~~L~~~V~D~d 109 (157)
T 2fk9_A 58 QLLDPYLTVSVD-----QV--RVGQTSTKQKTNKPTYNEEFCANVTD----GGHLELAVFHET 109 (157)
T ss_dssp CCCCEEEEEEET-----TE--EEEECCCCSSCSSCEEEEEEEEEEEE----ECEEEEEEEECC
T ss_pred CCCCeEEEEEEC-----CE--eeEEeeecCCCCCCccCcEEEEEcCC----CCEEEEEEEECC
Confidence 357999999873 22 23578889999999999998887642 234567777765
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.1 Score=49.78 Aligned_cols=68 Identities=15% Similarity=0.029 Sum_probs=53.1
Q ss_pred EEEEEEEEec-CCCccCCCcccccccccCCCCcccccccceeec-CCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 394 LHLAITVLEE-SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 394 I~LsL~~~~~-~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk-~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.-|++++..+ ++....||+++++... .|+||.+.+ +..||+||+.+-.++...........+++.+++
T Consensus 21 msL~V~l~~a~~Lpg~~Dp~akv~FRg--------~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~ 90 (144)
T 3l9b_A 21 MALIVHLKTVSELRGRADRIAKVTFRG--------QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYS 90 (144)
T ss_dssp EEEEEEEEEEESCCSCEEEEEEEEETT--------EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEEC
T ss_pred EEEEEEEEEecCCCCCCCCeEEEEEec--------cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECc
Confidence 3344444544 5667899999998832 478898887 799999999999998877777778889999987
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.18 Score=46.97 Aligned_cols=69 Identities=4% Similarity=0.056 Sum_probs=46.9
Q ss_pred ceEEEEEEEEEec----CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEE
Q 004056 391 IGRLHLAITVLEE----SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI 466 (776)
Q Consensus 391 ~GeI~LsL~~~~~----~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi 466 (776)
.|.|++.+.--.. .....+|||+++.+. + .++||.+.+++.||+||+.+.+.+.... ....+.++
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~l~~~v~ 84 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----K---TKKRTKTIYGNLNPVWEENFHFECHNSS---DRIKVRVL 84 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----T---EEEECCCCCSCSSCEEEEEEEEEECSTT---CEEEEEEE
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----C---EEEECCccCCCCCCCcccEEEEEecCCC---CEEEEEEE
Confidence 5777666532111 223468999999872 1 3578999999999999998877765332 34567777
Q ss_pred EecC
Q 004056 467 NIEG 470 (776)
Q Consensus 467 ~~~G 470 (776)
+.+.
T Consensus 85 d~d~ 88 (148)
T 3kwu_A 85 DEDD 88 (148)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 7764
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=92.22 E-value=0.083 Score=48.73 Aligned_cols=50 Identities=4% Similarity=-0.003 Sum_probs=37.6
Q ss_pred CCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 409 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 409 ~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
+|||+++.+. +. +..||.+++++.||+||+.+.+.++.. ....+.+++.+
T Consensus 38 ~DPyv~v~l~-----~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~----~~L~~~V~d~d 87 (136)
T 1gmi_A 38 LDPYIALNVD-----DS--RIGQTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDA 87 (136)
T ss_dssp CCEEEEEEET-----TE--EEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECC
T ss_pred cCcEEEEEEC-----Ce--EeeeeeEECCCcCCccCCEEEEEecCC----CEEEEEEEeCC
Confidence 8999999873 22 345788889999999999888876532 45567777776
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.16 Score=46.51 Aligned_cols=70 Identities=13% Similarity=0.056 Sum_probs=47.9
Q ss_pred CceEEEEEEEEEec----CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEE
Q 004056 390 KIGRLHLAITVLEE----SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP 465 (776)
Q Consensus 390 ~~GeI~LsL~~~~~----~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~v 465 (776)
..|.|++.+.--.. .....+|||+++.+. + .+.||.+.+++.||+||+.+.+.+... .....+.+
T Consensus 11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~---~~~kT~~~~~t~nP~wne~f~f~~~~~---~~~l~i~V 79 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELG-----N---DRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLEVTV 79 (133)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET-----T---EEEECCCCSSCSSCCCCEEEEEEESCT---TCEEEEEE
T ss_pred CceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC-----C---EEEEeeeecCCCCCccccEEEEEecCC---CCEEEEEE
Confidence 36777776632211 223468999999873 2 257899999999999999888877532 24467777
Q ss_pred EEecC
Q 004056 466 INIEG 470 (776)
Q Consensus 466 i~~~G 470 (776)
++.+.
T Consensus 80 ~d~d~ 84 (133)
T 2ep6_A 80 FDEDG 84 (133)
T ss_dssp EEEET
T ss_pred EECCC
Confidence 87764
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=90.99 E-value=0.21 Score=45.70 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=44.4
Q ss_pred ceEEEEEEEEEe-c---CCCccCCCcccccccccCCCCcccccccceeec-CCCceEEEecccccCCCCCCCCCCCceEE
Q 004056 391 IGRLHLAITVLE-E---SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEP 465 (776)
Q Consensus 391 ~GeI~LsL~~~~-~---~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk-~t~nP~~n~~~a~~Lp~~~~~~~~d~~~v 465 (776)
.|.|++.+.--. . ......|||+++.+. + .+.||.+.+ ++.||+||+.+.+.+.. ......+.+
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~-----~---~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V 77 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----T---QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKI 77 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----S---CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEE
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEEC-----C---ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEE
Confidence 577766652211 1 122468999999873 2 146888888 89999999988887653 333455666
Q ss_pred EEec
Q 004056 466 INIE 469 (776)
Q Consensus 466 i~~~ 469 (776)
++.+
T Consensus 78 ~d~~ 81 (136)
T 1wfj_A 78 FDKD 81 (136)
T ss_dssp CCSS
T ss_pred EECC
Confidence 6665
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=90.99 E-value=0.13 Score=48.14 Aligned_cols=74 Identities=14% Similarity=0.038 Sum_probs=48.5
Q ss_pred CceEEEEEEEEEec-CC-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCce
Q 004056 390 KIGRLHLAITVLEE-SA-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNF 463 (776)
Q Consensus 390 ~~GeI~LsL~~~~~-~~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~ 463 (776)
..|.|++.+ ..+ ++ ...+|||+++.+.. ...+...++||.+.+++.||+||+.+.+.+... .....+
T Consensus 18 ~~~~L~V~v--~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~ 90 (153)
T 3b7y_A 18 NSRIVRVRV--IAGIGLAKKDILGASDPYVRVTLYD--PMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLF 90 (153)
T ss_dssp TCEEEEEEE--EEEESCC-------CCEEEEEEEEE--TTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEE
T ss_pred CccEEEEEE--EEeeCCCCCCCCCCCCcEEEEEEEC--CCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEE
Confidence 467766655 333 22 24679999998842 122234678999999999999999888776542 234567
Q ss_pred EEEEecC
Q 004056 464 EPINIEG 470 (776)
Q Consensus 464 ~vi~~~G 470 (776)
.+++.+.
T Consensus 91 ~V~d~d~ 97 (153)
T 3b7y_A 91 EVFDENR 97 (153)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 7888763
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=90.86 E-value=0.18 Score=49.05 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=39.3
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
.+|||+++++. + .++||.+.+++.||+||+.+.+.+. ......+.++|.+
T Consensus 56 ~sDPYv~v~~~-----~---~~~kT~v~~~tlnP~Wne~f~f~v~----~~~~L~~~V~D~d 105 (173)
T 2nq3_A 56 GPSPYVEVTVD-----G---QSKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQ 105 (173)
T ss_dssp CCCEEEEEEET-----T---EEEECCCCSSCSSCEEEEEEEEEEC----TTCEEEEEEEECC
T ss_pred CCCeEEEEEEC-----C---EEeEccccCCCCCCeECCEEEEEeC----CCCEEEEEEEECC
Confidence 38999999873 2 4689999999999999998888763 2445677888876
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=89.33 E-value=0.3 Score=47.36 Aligned_cols=50 Identities=6% Similarity=-0.126 Sum_probs=34.8
Q ss_pred ccCCCcccccccccCCCCcccccccceee-cCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vk-k~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.. .+.||.+. +++.||+||+.+.+.+... .....+.++|.+
T Consensus 30 g~~DPYV~v~~----------~~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d 80 (167)
T 2cjs_A 30 EKFNTYVTLKV----------QNVESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG 80 (167)
T ss_dssp GGCEEEEEEEE----------TTEEEECCCEESSSCEEEEEEEEECCCT---TSEEEEEEEECC
T ss_pred CCCCeEEEEEe----------cceEEEEecCCCCCCCCCCEEEEEeeCC---CCEEEEEEEECC
Confidence 46799999862 12344444 4689999999988887632 234677888876
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=84.07 E-value=1.3 Score=52.04 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=45.6
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..+|||+++.+. ..++...++||.+.+++.||+||+.+.+.+...+. .....+.+++.+.
T Consensus 191 g~sDPyvkv~l~---p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~-~~~L~v~v~d~d~ 250 (674)
T 3pfq_A 191 GLSDPYVKLKLI---PDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDL 250 (674)
T ss_dssp SSCCEEEEEEEE---SCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTT-TCEEEEEEEECCS
T ss_pred cccCcccccccc---cCccccccccccccccccCCCccceeeeecccCCc-cceeeeEEeeccc
Confidence 468999999983 34555667899999999999999988887765443 2346778888773
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.58 E-value=7.3 Score=39.54 Aligned_cols=56 Identities=13% Similarity=0.290 Sum_probs=42.2
Q ss_pred eEEEeeeecCCCCCcceeeEEEeeccCC-CCCEEEEEEeecCCC----C-CCceeEEEEecC
Q 004056 317 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF----V-DDTLGDCTINIS 372 (776)
Q Consensus 317 ~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~~L~V~VyD~D~~----~-Dd~LG~v~I~L~ 372 (776)
..++|-|...+.+|.|+|++.+.++... ....|.|++|+.... + ...+|.+.+||-
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 4678889998999999999999998543 234799999986543 1 346677777764
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=81.76 E-value=1.5 Score=52.22 Aligned_cols=97 Identities=6% Similarity=-0.054 Sum_probs=61.5
Q ss_pred CceEEEEEEEEEec-CCC--------ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCC
Q 004056 390 KIGRLHLAITVLEE-SAK--------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVA 460 (776)
Q Consensus 390 ~~GeI~LsL~~~~~-~~k--------~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~ 460 (776)
..|.|++.+ ..+ ++. ..+|||+++.+. +....++||.+++++.||+||+.+.+.+... ....
T Consensus 16 ~~g~L~V~V--i~A~nL~~~~~~D~~g~sDPYV~V~l~-----~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~--~~~~ 86 (749)
T 1cjy_A 16 YSHKFTVVV--LRATKVTKGAFGDMLDTPDPYVELFIS-----TTPDSRKRTRHFNNDINPVWNETFEFILDPN--QENV 86 (749)
T ss_dssp CCEEEEEEE--EEEECCCSCHHHHHHCCCCEEEEEECT-----TSTTCCEECCCCTTCSSCEEEEEEEEEECTT--SCCB
T ss_pred CccEEEEEE--EEEECCCCccccCCCCCcCeEEEEEEe-----cCCCCeEecceEcCCCCCeeeeEEEEEecCC--CCCE
Confidence 457766665 332 222 358999999873 2223678999999999999999888877543 3346
Q ss_pred CceEEEEecCeeee--eEE-Ee--c-CCcccccccccccCC
Q 004056 461 DNFEPINIEGQQET--GIW-VH--Q-PGSEVAQTWEPRKGK 495 (776)
Q Consensus 461 d~~~vi~~~G~~~~--gv~-~~--~-pg~~~~~~W~~~~~~ 495 (776)
..+.+++.+..... |-. +. . ..+....+|.++.+.
T Consensus 87 L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 87 LEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV 127 (749)
T ss_dssp CEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred EEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence 78888888732222 443 11 1 222334778877654
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=81.50 E-value=4.3 Score=49.59 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=67.1
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CC----eEEEeeeecCCCCCcceeeEEEeec--cCCCCCEEEEEEee
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQL--GP----YRFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRD 355 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~L--g~----~~~kTkvikkTlNP~WnEtF~f~V~--~~e~~~~L~V~VyD 355 (776)
...+.|+|..+.++... ...+-||.+.+ |. ....|..+.-..+|.|||...|++. +.+....|.|.||+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 36799999999998754 34677888766 44 2345555555678999998888765 44455689999999
Q ss_pred cCCC-------------CCCceeEEEEecCcccCCCccceeeecCCCCceEEEEEE
Q 004056 356 KDHF-------------VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 398 (776)
Q Consensus 356 ~D~~-------------~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL 398 (776)
.... .+..||.+.++|-+... .| ..|...+.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~--------~l---~~G~~~l~l 337 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYKD--------QL---KTGERCLYM 337 (940)
T ss_dssp EC----------------CEEEEEEEEESBCTTS--------BB---CCEEEEEEC
T ss_pred ecCCccCccccccccccccceEEEEeeeEECCcC--------cc---ccCCEEEEE
Confidence 6331 13488888888876442 11 257776666
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=80.95 E-value=1.3 Score=50.87 Aligned_cols=76 Identities=8% Similarity=-0.152 Sum_probs=48.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee--e-eEEEecCCc
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE--T-GIWVHQPGS 483 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~--~-gv~~~~pg~ 483 (776)
..+|||+++.+. + .+.||.+.++++||+||+.+.+.+... ....+..+.++|.|.... - |...-....
T Consensus 412 g~sDPYV~v~l~-----~---~~~kTkvik~tlNP~Wne~f~f~~~~~-~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~~ 482 (540)
T 3nsj_A 412 TATDAYLKVFFG-----G---QEFRTGVVWNNNNPRWTDKMDFENVLL-STGGPLRVQVWDADYGWDDDLLGSCDRSPHS 482 (540)
T ss_dssp SCCCEEEEEEET-----T---EEEECCCBCSCSSCBCCCCEEEEEEET-TTCCCEEEEEEECCSSSCCEEEEEEEECCCS
T ss_pred CCcCeEEEEEEC-----C---EeeeeeeecCCCCCCCCeEEEEEEecC-CCCCEEEEEEEECCCCCCCCEEEEEEEEeeC
Confidence 357999999882 2 248999999999999999777653211 134566788999884322 2 544222223
Q ss_pred cccccccc
Q 004056 484 EVAQTWEP 491 (776)
Q Consensus 484 ~~~~~W~~ 491 (776)
+....|-+
T Consensus 483 g~~~~~~~ 490 (540)
T 3nsj_A 483 GFHEVTCE 490 (540)
T ss_dssp EEEEEEEE
T ss_pred CcEEEEEE
Confidence 33456654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 776 | ||||
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 8e-22 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-20 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-20 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-20 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-18 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-16 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-16 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-15 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-15 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 2e-14 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-14 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 2e-13 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-13 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 4e-12 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 4e-12 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-11 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-11 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-11 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 9e-10 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 7e-08 |
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.4 bits (221), Expect = 8e-22
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 288 RVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 341
V V+ A+ + D+ DPYV+ + R RT+ ++P W+E F I
Sbjct: 6 TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE-FIL 64
Query: 342 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 401
+ NVL I + D ++ +D+TLG T +S ++ G++ ++ + L +++ V
Sbjct: 65 DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 279 DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 338
DVK V +V+V++A+D+ +D +G +DP+ +LG R +T T K L+P+W++ F
Sbjct: 1 DVK-DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 339 PISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----G 392
PI D +VL + V D+D D LG I + +RDGQ + L+N + G
Sbjct: 60 PI--KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN--CYVLKNKDLEQAFKG 115
Query: 393 RLHLAITVL 401
++L + ++
Sbjct: 116 VIYLEMDLI 124
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 86.7 bits (214), Expect = 1e-20
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD 344
V +++A+++ D+ G +DPYVK L P +F TK RKTL+P ++E+F + +
Sbjct: 37 LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 345 SPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
LV+ V D D F D +G+ + ++ + G + W LQ+
Sbjct: 97 LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 84.4 bits (208), Expect = 5e-20
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 342
V V +A ++ P D NGL+DPYVK +L P +TKT + +L+P+W+E F +
Sbjct: 18 IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 77
Query: 343 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392
D L +E+ D D +D +G + IS+L+ D W L + + G
Sbjct: 78 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEG 127
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (192), Expect = 7e-18
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPI-- 340
V ++ A D+ + +PYVK P R RTKT +KTL PKW++ F
Sbjct: 17 IVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 76
Query: 341 STWDSPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+L I + D+ + LG+ I + W LQ
Sbjct: 77 RREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 125
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 74.8 bits (183), Expect = 1e-16
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 283 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNIPIS 341
P V +V A ++ +D DPYV+ ++ + +P+W+E F +S
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67
Query: 342 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQ--NIKIGRLHLA 397
+ L ++ DKD DD +G+ TI + + +G + G + +A
Sbjct: 68 --EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVA 125
Query: 398 IT 399
++
Sbjct: 126 LS 127
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 74.9 bits (183), Expect = 2e-16
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 333
+ +++A ++ P D NG +DP+VK L P Y+ RTK +K+L+P+W+
Sbjct: 21 IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80
Query: 334 EEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388
+ + + L + V D D F +D LG+ I++S W PL+
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.7 bits (175), Expect = 1e-15
Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 10/127 (7%)
Query: 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEF 336
P E ++ + + P+ ++ ++ T+ P+W F
Sbjct: 2 APFLRISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTF 59
Query: 337 NIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 396
+ I +++ +D + T+G + ++ + + W+ LQ ++ +
Sbjct: 60 DAHIYEGRVIQIVL-MRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLM 116
Query: 397 AITVLEE 403
+ E
Sbjct: 117 CVQYFLE 123
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 72.1 bits (176), Expect = 1e-15
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V V++A + SD++GL+DPYVK L + +T ++ T + ++E F I
Sbjct: 18 TVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77
Query: 343 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 387
+ V D + ++ +G + + G H W L
Sbjct: 78 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 68.4 bits (166), Expect = 2e-14
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 288 RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYRF-RTKTQRKTLSPKWHEE 335
++++ EA +KP+ L DPY+ + R +T T++KT SP WH+E
Sbjct: 9 KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 336 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQNIKIG 392
F + + V DD + +CTI +L + + WI L+ G
Sbjct: 69 FVTDVCNGRKI---ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123
Query: 393 RLHLAITVLEESA 405
++++ I + S
Sbjct: 124 KVYVIIDLSGSSG 136
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.1 bits (168), Expect = 2e-14
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPIST 342
V ++EA ++K D+ GL+DPYVK L + +T ++ TL+P ++E F+ +
Sbjct: 28 TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
V +V+ V D D +D +G + + RH W LQ
Sbjct: 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147
Query: 389 IKIGRLHLAI 398
+ LA+
Sbjct: 148 EEEVDAMLAV 157
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.5 bits (159), Expect = 2e-13
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Query: 289 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 348
V V +A + + YV ++ + T + P W ++F I+ D
Sbjct: 6 VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLG-- 59
Query: 349 LVIEVRDKDHFVDDTLGDCTINISDLR--DGQRHDMWIPLQ 387
L +EV +K D +G I + +R + + W+ L
Sbjct: 60 LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 100
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (158), Expect = 3e-13
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 342
V ++ + D NG +DP+VK L P + +T+ ++KTL+P+++EEF I
Sbjct: 18 IVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77
Query: 343 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 388
D + L I V D D +D +G C + IS + +H + W LQN
Sbjct: 78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 137
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (150), Expect = 4e-12
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 330
+ +D A V +EA + +G D YV+G + +T +++ L
Sbjct: 16 HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72
Query: 331 KWHEEFNIPISTWDSP-NVLVIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDMWIPLQ 387
W E +P++ + P L + +R D F ++ G+ + + W L+
Sbjct: 73 TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 4e-12
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 347
++ V+ A + PYV+ + +T+ T SPKW + + ++ +
Sbjct: 9 QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV---S 65
Query: 348 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQ-------NIKIGRLHL 396
L V D LG ++I + + + ++ + LQ IG L +
Sbjct: 66 KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125
Query: 397 AITVLE 402
+ L+
Sbjct: 126 CLDGLQ 131
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 1e-11
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLGP---YRFRTKTQRKTLSP 330
+FS++ V + EA + D +DPY+K + P ++ +T+ RKTL P
Sbjct: 12 FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71
Query: 331 KWHEEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387
+ E F + L + D F DD +G+ I +S + + M + +
Sbjct: 72 AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK-MLMNRE 130
Query: 388 NIK 390
I
Sbjct: 131 IIS 133
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.8 bits (144), Expect = 2e-11
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 288 RVEVVEASDMKP--SDLNGLADPYVKGQLGPYRFRTKTQRKT------LSPKWHEEFNIP 339
RV ++ + + N + DP V ++ T +++ +P+W EF
Sbjct: 7 RVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 66
Query: 340 ISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
+ T ++ V D D + +G TI + L+ G R + L + + A
Sbjct: 67 V-TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQHPSA 121
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (142), Expect = 5e-11
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPIST 342
V +++AS++K DL G +DPYVK L + +T ++ TL+P ++E ++
Sbjct: 23 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 82
Query: 343 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 387
NV L I V D D ++ +G C + + + W L
Sbjct: 83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 142
Query: 388 NIK 390
K
Sbjct: 143 EEK 145
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.3 bits (132), Expect = 9e-10
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 275 WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 331
F++ V +++A D+ D NG +DPYVK L P R F+TK RKTL+P
Sbjct: 8 SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 67
Query: 332 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 387
++E F + + L V D D F D +G ++ +W +
Sbjct: 68 FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (118), Expect = 7e-08
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)
Query: 288 RVEVVEASDMKPSDLNGLADPYVKGQLGP--------YRFRTKTQRKTLSPKWHEEFNI- 338
+ V+ + YV+ +L YR + +++P W EE +
Sbjct: 4 SITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59
Query: 339 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 397
L + V ++ + LG I I+ L G H + L + L +
Sbjct: 60 EKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGYHH---LCLHSESNMPLTMP 112
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 776 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.84 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.82 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.82 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.79 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.79 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.77 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.76 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.75 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.75 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.72 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.71 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.71 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.7 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.66 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.66 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.59 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 98.93 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 98.91 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 98.76 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 98.7 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 97.62 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 97.42 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 97.32 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 97.29 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 97.07 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 96.85 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.35 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 94.06 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 93.14 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 92.13 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 92.01 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 91.96 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 91.34 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 90.38 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 89.23 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 86.94 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 82.85 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=4e-21 Score=177.49 Aligned_cols=117 Identities=32% Similarity=0.518 Sum_probs=104.3
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV- 360 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~- 360 (776)
.+.|.|+|+|++|+||+++|..|.+||||++++++++++|+++++|+||.|||+|.|.+... .+.|.|+|||++.++
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~--~~~L~i~V~d~~~~~~ 80 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI--HDVLEVTVFDEDGDKP 80 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT--TCEEEEEEEEEETTEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc--CceeEEEEEEccCCcC
Confidence 47899999999999999999999999999999999999999999999999999999999853 468999999999987
Q ss_pred CCceeEEEEecCcccCCCccceeeecCC-----CCceEEEEEEEEEe
Q 004056 361 DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE 402 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~~~~~~~~W~~L~~-----~~~GeI~LsL~~~~ 402 (776)
|++||++.++|+++..+. ..|+.|.. ..+|+|+|+++|+.
T Consensus 81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEEE
Confidence 899999999999997654 45776653 34799999999874
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.1e-20 Score=174.12 Aligned_cols=118 Identities=25% Similarity=0.416 Sum_probs=105.9
Q ss_pred eeEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecC
Q 004056 284 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 357 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~---D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D 357 (776)
.+.|+|+|++|+||+.. |..|.+||||++++++ ++++|+++.+++||.|||+|.|.+... ....|.|+|||++
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~-~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCc-ccCcEEEEEEECC
Confidence 36899999999999974 4568999999999976 688999999999999999999999753 3568999999999
Q ss_pred CCCCCceeEEEEecCcccCCCccceeeecCCCCceEEEEEEEEEe
Q 004056 358 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 358 ~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
..+|++||++.++|+++..+...+.|++|.+...|+|++++++.+
T Consensus 81 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS 125 (126)
T ss_dssp SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred CCCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence 888999999999999999988899999999888899999998764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.82 E-value=2.3e-20 Score=174.44 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=106.1
Q ss_pred cCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCcceeeEEEeeccCCCCCEEEEEEeecCCC
Q 004056 281 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF 359 (776)
Q Consensus 281 ~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvik-kTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~ 359 (776)
..|.|+|+|+|++|++|+.+|..|++||||+++++++.++|++++ +++||.|||+|.|.+... ...|+|+|||+|.+
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~--~~~L~v~V~d~d~~ 83 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG--TTELKAKIFDKDVG 83 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS--CCEEEEEECCSSSC
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc--cceEEEEEEEecCC
Confidence 468899999999999999999999999999999999999999987 599999999999999853 45799999999998
Q ss_pred C-CCceeEEEEecCcccC-CCccceeeecCC--CCceEEEEEEEEEec
Q 004056 360 V-DDTLGDCTINISDLRD-GQRHDMWIPLQN--IKIGRLHLAITVLEE 403 (776)
Q Consensus 360 ~-Dd~LG~v~I~L~~L~~-~~~~~~W~~L~~--~~~GeI~LsL~~~~~ 403 (776)
+ |++||++.|+|.++.. +.....|+.|.. ...|+|+|+++|.|.
T Consensus 84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS 131 (136)
T ss_dssp TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence 6 8999999999998754 344577888854 237999999999985
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=1.2e-19 Score=171.13 Aligned_cols=117 Identities=29% Similarity=0.476 Sum_probs=104.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCcceeeEEEeeccCC-CCC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 347 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg---~~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~~ 347 (776)
+...+++.|+...+.|+|+|++|+||++++..|.+||||++++. .+.++|+++++|.||.|||+|.|.+...+ ...
T Consensus 21 G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~ 100 (143)
T d1rsya_ 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGK 100 (143)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTC
T ss_pred eEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCc
Confidence 45678999999999999999999999999999999999999994 36789999999999999999999886432 346
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
.|.|+|||++.++ +++||++.|+|.++..+...+.|++|+.
T Consensus 101 ~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 101 TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 8999999999987 8899999999999998888899999975
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=8.1e-20 Score=169.91 Aligned_cols=110 Identities=33% Similarity=0.492 Sum_probs=96.0
Q ss_pred CceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 282 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 282 ~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg-----~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
...+.|.|+|++|+||+++|.+|.+||||++++. ..+++|+++++|+||+|||+|.|.+...+....|.|+|||+
T Consensus 12 ~~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 12 IDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp ESSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred ecCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 3568999999999999999999999999999993 36889999999999999999999987544456899999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCCCCce
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 392 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~~G 392 (776)
|.++ |++||++.|+|.++..+ ..+.|++|.+.+.|
T Consensus 92 d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g 127 (132)
T d1a25a_ 92 DLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG 127 (132)
T ss_dssp CSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred CCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence 9987 89999999999998765 46789999875444
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=4.6e-19 Score=164.58 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=100.2
Q ss_pred CCCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 271 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 271 ~~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~---~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
-+..++++.|.+..+.|.|+|++|+||+.++.+|.+||||++++.+ ++++|+++++|.||.|||+|.|.+...+ ..
T Consensus 4 ~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~ 83 (130)
T d1dqva1 4 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 83 (130)
T ss_dssp SCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSS
T ss_pred cEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCC
Confidence 3457899999999999999999999999999999999999999954 6799999999999999999999987433 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcc-cC-CCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDL-RD-GQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L-~~-~~~~~~W~~L~~ 388 (776)
..|.|+|||++.++ |++||++.|++... .. ......|++|.+
T Consensus 84 ~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 84 RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp CCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred CeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 57999999999986 99999999986543 22 234567999985
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.76 E-value=1.9e-18 Score=161.98 Aligned_cols=115 Identities=27% Similarity=0.477 Sum_probs=100.9
Q ss_pred eeEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEeCCeE-EEeeeecCCCCCcceeeEEEeeccCCCCCEEEE
Q 004056 284 VAYARVEVVEASDMKPSD-----------LNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI 351 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D-----------~~G~sDPYVkv~Lg~~~-~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V 351 (776)
.|.|+|+|++|++|++.+ ..+.+||||+++++.+. .+|+++.++.||.|||+|.|.+.+ .+.|.|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~---~~~l~i 81 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIEL 81 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec---CCceEE
Confidence 599999999999999754 35788999999999854 689999999999999999999975 368999
Q ss_pred EEeecCCCC-CCceeEEEEecCcccCCC--ccceeeecCCCCceEEEEEEEEEec
Q 004056 352 EVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEE 403 (776)
Q Consensus 352 ~VyD~D~~~-Dd~LG~v~I~L~~L~~~~--~~~~W~~L~~~~~GeI~LsL~~~~~ 403 (776)
+|||++.++ |++||++.|+|+++..+. ..+.|++|++ .|+|++.+++.+.
T Consensus 82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGS 134 (136)
T ss_dssp EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEE
T ss_pred EEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeC
Confidence 999999987 899999999999987553 4678999985 7999999998874
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=1.7e-19 Score=169.07 Aligned_cols=116 Identities=28% Similarity=0.495 Sum_probs=99.7
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--------------eEEEeeeecCCCCCcceeeEE
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWHEEFN 337 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~--------------~~~kTkvikkTlNP~WnEtF~ 337 (776)
+...+++.|+ .|.|.|+|++|+||+++|..|.+||||++++.+ +++||+++++|+||.|||+|.
T Consensus 7 G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~ 84 (142)
T d1rh8a_ 7 GEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84 (142)
T ss_dssp CEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEE
T ss_pred eEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEE
Confidence 4567888885 589999999999999999999999999999853 235799999999999999999
Q ss_pred EeeccCC--CCCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 338 IPISTWD--SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 338 f~V~~~e--~~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
|.+...+ ....|.|+|||+|.++ |++||++.|+|.++..+.....||+|++.
T Consensus 85 f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 85 YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp ECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred EeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 9743211 3458999999999887 89999999999999888888999999874
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=3.6e-18 Score=160.20 Aligned_cols=115 Identities=20% Similarity=0.339 Sum_probs=101.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
+.++++++|+...+.|.|+|++|++|+. .|.+||||++++.+ ..++|++++++.||+|||+|.|.+...+ ..
T Consensus 13 ~~l~~sl~y~~~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~ 89 (138)
T d1wfma_ 13 PKLHYCLDYDCQKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPT 89 (138)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTT
T ss_pred CEEEEEEEECCCCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccc
Confidence 4578999999999999999999999953 57899999999954 4678999999999999999999987543 34
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI 389 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~ 389 (776)
..|.|+|||++.++ +++||++.|+|.++......+.|++|++.
T Consensus 90 ~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 90 ATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp CEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred eEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence 68999999999987 89999999999999888888999999874
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.3e-18 Score=156.67 Aligned_cols=113 Identities=25% Similarity=0.351 Sum_probs=94.1
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEe-eccCC-CC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP 346 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~~ 346 (776)
..+++.|.+..+.|+|+|++|+||++++.++.+||||++++.+ .+++|+++++++||.|||+|.|. +...+ ..
T Consensus 3 l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~ 82 (125)
T d2bwqa1 3 LSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRE 82 (125)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGG
T ss_pred EEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCC
Confidence 4578999999999999999999999999999999999999943 57899999999999999999996 44322 23
Q ss_pred CEEEEEEeecCCCC---CCceeEEEEecCcccCCCccceeeecC
Q 004056 347 NVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 347 ~~L~V~VyD~D~~~---Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
..|.|+|||++.++ +++||++.++|+++.... ...||+|+
T Consensus 83 ~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~ 125 (125)
T d2bwqa1 83 RMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 125 (125)
T ss_dssp CEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred CEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence 57999999999863 569999999999987655 45799985
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=7.2e-18 Score=157.47 Aligned_cols=116 Identities=19% Similarity=0.245 Sum_probs=95.4
Q ss_pred eeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC-CC
Q 004056 284 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD 362 (776)
Q Consensus 284 ~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~-Dd 362 (776)
.+.|.|+|++|++++.++..+.+||||++.++++.++|+++++|+||.|||.|.|.+.. .+.|.|+|||+|.++ |+
T Consensus 5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~~~~d~ 81 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKSDV 81 (133)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSCCE
T ss_pred ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccCCCCCc
Confidence 37899999999999998888899999999999999999999999999999999999874 368999999999997 99
Q ss_pred ceeEEEEecCcccC---CCcc--ceeeecCC-----CCceEEEEEEEEEe
Q 004056 363 TLGDCTINISDLRD---GQRH--DMWIPLQN-----IKIGRLHLAITVLE 402 (776)
Q Consensus 363 ~LG~v~I~L~~L~~---~~~~--~~W~~L~~-----~~~GeI~LsL~~~~ 402 (776)
+||++.++|.++.. +... ..|+.|.. ...|+|++.|.++.
T Consensus 82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence 99999999998743 2222 33444432 23699998887654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.3e-17 Score=153.49 Aligned_cols=116 Identities=24% Similarity=0.318 Sum_probs=96.9
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCC-CCCcEEEEEeC---CeEEEeeeecCCCCCcceeeEEEe-eccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G-~sDPYVkv~Lg---~~~~kTkvikkTlNP~WnEtF~f~-V~~~e-~ 345 (776)
+..+|+|.|....+.|.|+|++|+||+.++..+ .+||||++++. .++++|+++++++||.|||+|.|. +...+ .
T Consensus 9 G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~ 88 (138)
T d1ugka_ 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQ 88 (138)
T ss_dssp CEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGG
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcc
Confidence 557899999999999999999999999988665 47999999994 368899999999999999999996 44322 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCC-ccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~-~~~~W~~L~ 387 (776)
...|+|+|||+|.++ |++||++.|+|+++...+ ....|..+.
T Consensus 89 ~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 89 ELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp GCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred cceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 357999999999987 999999999999986543 445666654
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=2.8e-17 Score=152.84 Aligned_cols=114 Identities=29% Similarity=0.414 Sum_probs=96.1
Q ss_pred CceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-CC
Q 004056 273 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 346 (776)
Q Consensus 273 ~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~~ 346 (776)
..++++.|.+..+.|.|+|++|+||+.++..+.+||||++++.+ .+++|++++++.||.|||+|.|.+...+ ..
T Consensus 3 ~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~ 82 (137)
T d2cm5a1 3 KILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAK 82 (137)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGG
T ss_pred EEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccc
Confidence 35688999999999999999999999999999999999999843 5789999999999999999999987533 23
Q ss_pred CEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecCC
Q 004056 347 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 388 (776)
Q Consensus 347 ~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~ 388 (776)
..|.|.|||++..+ +++||++.++|..+. .....|+.|.+
T Consensus 83 ~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~ 123 (137)
T d2cm5a1 83 KSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLK 123 (137)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHH
T ss_pred cEEEEEeeeCCCCCCCCEEEEEEeCccccC--cchhhhhhHhh
Confidence 57999999999886 999999999998653 23345666543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=2.7e-17 Score=157.43 Aligned_cols=117 Identities=26% Similarity=0.382 Sum_probs=99.6
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS- 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~- 345 (776)
+..++++.|.+..+.|.|+|++|+||+.++..+.+||||++++.+ ..++|++++++.||+|||+|.|.+...+.
T Consensus 12 G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~ 91 (157)
T d1uowa_ 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 91 (157)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred eEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcC
Confidence 346899999999999999999999999999999999999999854 35689999999999999999999875432
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCccc------------CCCccceeeecCC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQN 388 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~------------~~~~~~~W~~L~~ 388 (776)
...|.|.|||++.++ +++||++.|++.... ......+|+.|+.
T Consensus 92 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 92 KVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp GCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred ccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 347999999999997 999999999997642 2234568888875
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=3.2e-17 Score=153.40 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=83.8
Q ss_pred ceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCC-CC
Q 004056 274 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-PN 347 (776)
Q Consensus 274 ~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~-~~ 347 (776)
..++|.|.+..+.|.|+|++|+||++++.++.+||||++++.+ .+++|++++++.||.|||+|.|.+...+. ..
T Consensus 4 l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~ 83 (138)
T d1w15a_ 4 LLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEI 83 (138)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTE
T ss_pred EEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCcc
Confidence 5688999999999999999999999999999999999999832 46789999999999999999999875443 34
Q ss_pred EEEEEEeecCCCC-CCceeEEEEecCcc
Q 004056 348 VLVIEVRDKDHFV-DDTLGDCTINISDL 374 (776)
Q Consensus 348 ~L~V~VyD~D~~~-Dd~LG~v~I~L~~L 374 (776)
.|.|.|||++.++ +++||++.++|...
T Consensus 84 ~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 84 SVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 6999999999987 99999999999864
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=2.3e-16 Score=146.73 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=86.2
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCCCCce
Q 004056 285 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 364 (776)
Q Consensus 285 GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~Dd~L 364 (776)
+.|.|+|.+|++|+++| ..||||+++++.++.+|++++ +.||.|||+|.|.+... ...|.|+|||++..+|++|
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~--~~~L~v~V~d~~~~~d~~l 75 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL--DLGLTVEVWNKGLIWDTMV 75 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC--SSEEEEEEEECCSSCEEEE
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc--cceEEEEEEeCCCcCCcce
Confidence 68999999999999876 679999999999999999986 55999999999999864 4689999999998889999
Q ss_pred eEEEEecCcccCC--CccceeeecCC
Q 004056 365 GDCTINISDLRDG--QRHDMWIPLQN 388 (776)
Q Consensus 365 G~v~I~L~~L~~~--~~~~~W~~L~~ 388 (776)
|++.|+|+++... .....|++|..
T Consensus 76 G~~~I~L~~l~~~~~~~~~~W~~L~~ 101 (128)
T d2cjta1 76 GTVWIPLRTIRQSNEEGPGEWLTLDS 101 (128)
T ss_dssp EEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred EEEEEEehhhccCCCCCCCeeEECCc
Confidence 9999999998643 34578999964
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.5e-16 Score=146.17 Aligned_cols=113 Identities=20% Similarity=0.339 Sum_probs=88.7
Q ss_pred eEEEEEEEEecCCCCC--CCCCCCCcEEEEEeC-----CeEEEeeeecC-CCCCcceeeEEEeeccCCCCCEEEEEEeec
Q 004056 285 AYARVEVVEASDMKPS--DLNGLADPYVKGQLG-----PYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDK 356 (776)
Q Consensus 285 GvL~V~VieA~~L~~~--D~~G~sDPYVkv~Lg-----~~~~kTkvikk-TlNP~WnEtF~f~V~~~e~~~~L~V~VyD~ 356 (776)
..|+|+|++|++|+.. +.+|.+||||++++. .++++|+++++ ++||.|||+|.|.+... ....|+|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence 4799999999999754 567889999999983 37889998765 58999999999988753 345799999999
Q ss_pred CCCC-CCceeEEEEecCcccCCCccceeeecCCCC-----ceEEEEEEEEE
Q 004056 357 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVL 401 (776)
Q Consensus 357 D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~-----~GeI~LsL~~~ 401 (776)
|.++ |++||++.++|.++..+. .|++|.+.. .+.|.+++++.
T Consensus 83 d~~~~d~~iG~~~i~l~~l~~g~---~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 83 DSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp CTTTCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCcEEEEEEEEEeccCCCC---EEEECCCCCcCCCCCCEEEEEEEEE
Confidence 9997 899999999999997653 578886532 45666776654
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=2.1e-17 Score=155.81 Aligned_cols=115 Identities=24% Similarity=0.394 Sum_probs=96.8
Q ss_pred CCceeeeeecCceeEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCC-C
Q 004056 272 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S 345 (776)
Q Consensus 272 ~~~~fsL~y~~~~GvL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e-~ 345 (776)
+...|+|.|.+..|.|.|+|++|+||+.++..|.+||||++++.+ .+++|+++++++||.|||+|.|.+...+ .
T Consensus 7 G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~ 86 (145)
T d1dqva2 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVE 86 (145)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGG
T ss_pred eEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcC
Confidence 456899999999999999999999999999999999999999965 3679999999999999999999887432 2
Q ss_pred CCEEEEEEeecCCCC-CCceeEEEEecCcccCCCccceeeecC
Q 004056 346 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 387 (776)
Q Consensus 346 ~~~L~V~VyD~D~~~-Dd~LG~v~I~L~~L~~~~~~~~W~~L~ 387 (776)
...|.|.|||++.++ +++||++.|+|..+... ....|++|.
T Consensus 87 ~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 87 NVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp SCCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred CCEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 357999999999987 89999999999876422 234566554
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=2.3e-15 Score=138.68 Aligned_cols=107 Identities=15% Similarity=0.352 Sum_probs=88.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcceeeEEEeeccCCCCCEEEEEEeecCCCC
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV 360 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~-----~~~kTkvikkTlNP~WnEtF~f~V~~~e~~~~L~V~VyD~D~~~ 360 (776)
.+.|.++++..++. .++.+||||+|++.+ ...+|+++++|+||+|||+|+|.+.. .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~---~~~l~i~V~d~d--- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT---TCEEEEEEEEET---
T ss_pred EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc---ccEEEEEEEEcc---
Confidence 45555566666554 478999999999954 24679999999999999999999974 468999999986
Q ss_pred CCceeEEEEecCccc-----CCCccceeeecCCCCceEEEEEEEEEe
Q 004056 361 DDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVLE 402 (776)
Q Consensus 361 Dd~LG~v~I~L~~L~-----~~~~~~~W~~L~~~~~GeI~LsL~~~~ 402 (776)
++++|.+.+++..+. .+...+.|++|+ +.|+|+++++|..
T Consensus 78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL 122 (123)
T ss_dssp TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence 789999999999874 355678999998 4899999999875
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4e-12 Score=116.59 Aligned_cols=94 Identities=24% Similarity=0.348 Sum_probs=71.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeee--ecCCCCCcceee-EEEe-eccCCCCCEEEEEEee
Q 004056 286 YARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKT--QRKTLSPKWHEE-FNIP-ISTWDSPNVLVIEVRD 355 (776)
Q Consensus 286 vL~V~VieA~~L~~~D~~G~sDPYVkv~Lg~------~~~kTkv--ikkTlNP~WnEt-F~f~-V~~~e~~~~L~V~VyD 355 (776)
+|.|+|++|++|+.+ ..||||++++.+ .+++|++ ..+++||.|||+ |.|. +... .-..|+|.|||
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~-~l~~L~f~V~D 76 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP-ELASLRVAVME 76 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG-GGCEEEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC-cccEEEEEEEC
Confidence 689999999999865 479999999831 4455555 467899999976 4443 3332 23489999999
Q ss_pred cCCCCCCceeEEEEecCcccCCCccceeeecCCCC
Q 004056 356 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIK 390 (776)
Q Consensus 356 ~D~~~Dd~LG~v~I~L~~L~~~~~~~~W~~L~~~~ 390 (776)
+| |++||++.+||+.+..|. +|++|.+..
T Consensus 77 ~d---~~~lG~~~ipl~~l~~Gy---R~vpL~~~~ 105 (122)
T d2zkmx2 77 EG---NKFLGHRIIPINALNSGY---HHLCLHSES 105 (122)
T ss_dssp TT---TEEEEEEEEEGGGBCCEE---EEEEEECTT
T ss_pred CC---CCEEEEEEEEcccCcCCc---eEEEccCCC
Confidence 86 899999999999998775 556776643
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.93 E-value=2.3e-10 Score=106.03 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=85.8
Q ss_pred ceEEEEEEEEEecCCC-----------------ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCC
Q 004056 391 IGRLHLAITVLEESAK-----------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 453 (776)
Q Consensus 391 ~GeI~LsL~~~~~~~k-----------------~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~ 453 (776)
+|+|+++|+|.+.+.+ ...|||+++++ ...+++..++||.+++++.||.||+.+.|.++.
T Consensus 1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l---~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~ 77 (138)
T d1w15a_ 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNL---YHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEE---EETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEE---eCCcccCccccceeECCCCCCeECcEEEEEecH
Confidence 4788888887765211 24689999998 345666778899999999999999999999988
Q ss_pred CCCCCCCCceEEEEecCee--ee-eE-EEec-CCcccccccccccCCCCCccceEeecCC
Q 004056 454 EKSPKVADNFEPINIEGQQ--ET-GI-WVHQ-PGSEVAQTWEPRKGKNRRLDTLVRRVPN 508 (776)
Q Consensus 454 ~~~~~~~d~~~vi~~~G~~--~~-gv-~~~~-pg~~~~~~W~~~~~~~r~~~~q~~~~~~ 508 (776)
.+.......+.+++.+... +- |- .+.- ..+....||.+|+..||+|++|||..-+
T Consensus 78 ~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 78 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred HHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence 8887777888999987432 22 43 3332 2223348999999999999999997643
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.91 E-value=3.7e-10 Score=105.36 Aligned_cols=115 Identities=15% Similarity=0.227 Sum_probs=85.3
Q ss_pred CceEEEEEEEEEecC------------C-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 390 KIGRLHLAITVLEES------------A-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 390 ~~GeI~LsL~~~~~~------------~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..|+|+|+|+|.+.. . ....|||+++++ ..++++..++||.+++++.||+||+.+.|.++
T Consensus 5 ~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l---~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~ 81 (145)
T d1dqva2 5 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL---ISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81 (145)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECC---CTTCCTTSCEECCCCCSCSSCEEEECCCCCCC
T ss_pred cceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEE---ccCCccceeecCEEEeCCCCceecceEEEEEe
Confidence 367777777776542 1 134689999998 45667777889999999999999999888888
Q ss_pred CCCCCCCCCceEEEEecCeeee---eEE-Ee--cCCcccccccccccCCCCCccceEeecC
Q 004056 453 SEKSPKVADNFEPINIEGQQET---GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G~~~~---gv~-~~--~pg~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
..+.......+.+.+.+..... |-. +. ........||.+|+.+||.|++|||...
T Consensus 82 ~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~ 142 (145)
T d1dqva2 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 142 (145)
T ss_dssp SGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCB
T ss_pred hhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECC
Confidence 7777777888899988743322 432 22 2222334899999999999999999654
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=1.3e-09 Score=103.27 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=85.3
Q ss_pred ceEEEEEEEEEecC-----------------CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCC
Q 004056 391 IGRLHLAITVLEES-----------------AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 453 (776)
Q Consensus 391 ~GeI~LsL~~~~~~-----------------~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~ 453 (776)
.|+|.++++|.+.. .....|||+++++ ...+++..++||.+++++.||+||+.+.|.++.
T Consensus 11 ~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l---~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~ 87 (157)
T d1uowa_ 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHL---MQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (157)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE---EETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred eeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEE---ecCCccccceecccccCCCCcccCCeEEEEecH
Confidence 56777776666542 1235799999998 456777778899999999999999999999988
Q ss_pred CCCCCCCCceEEEEecCeeee---e-EEEecC-CcccccccccccCCCCCccceEeecC
Q 004056 454 EKSPKVADNFEPINIEGQQET---G-IWVHQP-GSEVAQTWEPRKGKNRRLDTLVRRVP 507 (776)
Q Consensus 454 ~~~~~~~d~~~vi~~~G~~~~---g-v~~~~p-g~~~~~~W~~~~~~~r~~~~q~~~~~ 507 (776)
.+.......+.+++++.-... | +++.-. -....+||.+|+.+||.|.++||..-
T Consensus 88 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~ 146 (157)
T d1uowa_ 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ 146 (157)
T ss_dssp GGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred HHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCC
Confidence 877777788888888743222 4 334421 22335999999999999999999754
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=2.9e-09 Score=97.72 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=81.0
Q ss_pred ceEEEEEEEEEecC------------C-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCC
Q 004056 391 IGRLHLAITVLEES------------A-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSS 453 (776)
Q Consensus 391 ~GeI~LsL~~~~~~------------~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~ 453 (776)
+|+|+|+++|.+.. + ....|||+++++ ...++...++||.+++++.||.||+.+.+.++.
T Consensus 1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l---~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~ 77 (137)
T d2cm5a1 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWL---KPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77 (137)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEE---ETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEE---EcCCccceeecCEeEcCCCCCccceEEEEEeEH
Confidence 47777777776542 1 134789999998 345666778899999999999999999999887
Q ss_pred CCCCCCCCceEEEEecC--eeee-e-EEEec-CCcccccccccccCCCCCccceEeec
Q 004056 454 EKSPKVADNFEPINIEG--QQET-G-IWVHQ-PGSEVAQTWEPRKGKNRRLDTLVRRV 506 (776)
Q Consensus 454 ~~~~~~~d~~~vi~~~G--~~~~-g-v~~~~-pg~~~~~~W~~~~~~~r~~~~q~~~~ 506 (776)
.+.......+.+++.+. ..+- | +.+.- .-.....||.+++.+++.|.++||..
T Consensus 78 ~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L 135 (137)
T d2cm5a1 78 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 135 (137)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred HHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceec
Confidence 77777777788887762 2222 3 33442 22233489999999999999999964
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.62 E-value=2.9e-05 Score=70.12 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=46.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. ..+ .+++||.+++++.||+||+.+.+.++..+.......+.+++.+.
T Consensus 37 g~~dpyv~v~l~---~~~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~ 95 (130)
T d1dqva1 37 GFSDPYVKIYLL---PDR--KKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR 95 (130)
T ss_dssp SCCCEEEEEECT---TST--TSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred CCcceEEEEEEc---cCC--CceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC
Confidence 357999999883 222 24688999999999999999888888777777778899999873
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=5.7e-05 Score=68.86 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=60.2
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeeee---eEE-Eec--
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET---GIW-VHQ-- 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~~---gv~-~~~-- 480 (776)
...|||+++++. ..++..++||.+++++.||+||+.+.+.++..++......+.+++.+.-... |-. +.-
T Consensus 42 g~~dpyVkv~l~----~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~ 117 (138)
T d1wfma_ 42 GGCDCYVQGSVA----NRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117 (138)
T ss_dssp SCCCEEEEEEEE----ETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSS
T ss_pred CCcCcEEEEEEC----CCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccccceeeeEEEEEhHH
Confidence 457999999984 2233456789999999999999999999988888888888999998743322 433 331
Q ss_pred -CCcccccccccccCC
Q 004056 481 -PGSEVAQTWEPRKGK 495 (776)
Q Consensus 481 -pg~~~~~~W~~~~~~ 495 (776)
..+....+|.++..+
T Consensus 118 l~~~~~~~~W~~L~~~ 133 (138)
T d1wfma_ 118 TSVPLGAAQWGELKTS 133 (138)
T ss_dssp SSSCTTCCEEEECCCC
T ss_pred ccCCCCceEeEeCCCC
Confidence 222334778877654
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.32 E-value=5.8e-05 Score=67.44 Aligned_cols=61 Identities=5% Similarity=-0.080 Sum_probs=45.9
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEecC
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~G 470 (776)
...|||+++++. .......++||.+++++.||+||+.+.+. ++..+.......+.+++.+.
T Consensus 33 ~~~dpyVkv~l~---~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~~ 94 (125)
T d2bwqa1 33 RPRNPYVKIYFL---PDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQAR 94 (125)
T ss_dssp CCBCEEEEEEEE---SSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC--
T ss_pred CCCCEEEEEEEe---CCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECCC
Confidence 357899999983 33344567899999999999999988875 66666666677788888763
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.29 E-value=0.0001 Score=67.38 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=64.8
Q ss_pred CceEEEEEEEEEecC------------C-----CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCC
Q 004056 390 KIGRLHLAITVLEES------------A-----KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVS 452 (776)
Q Consensus 390 ~~GeI~LsL~~~~~~------------~-----k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp 452 (776)
..|+|+++++|.+.. + ...+|||+++++. ..++ +++||.+.+++.||+||+.+.+.++
T Consensus 19 ~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~---~~~~--~~~kT~~~~~t~~P~wne~f~f~i~ 93 (143)
T d1rsya_ 19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL---PDKK--KKFETKVHRKTLNPVFNEQFTFKVP 93 (143)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE---TTCC--SCEECCCCTTCSSCEEEEEEEECCC
T ss_pred cceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEc---CCCC--eeEEEEEeccccCcceeeeeEEEEE
Confidence 357777777665431 1 2357999999883 2222 4578999999999999999888877
Q ss_pred CCCCCCCCCceEEEEecC--eeee-eEE-Ee--c-CCcccccccccccC
Q 004056 453 SEKSPKVADNFEPINIEG--QQET-GIW-VH--Q-PGSEVAQTWEPRKG 494 (776)
Q Consensus 453 ~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--~-pg~~~~~~W~~~~~ 494 (776)
..+.......+.+++.+. .... |-. +. . +.+....||.+++.
T Consensus 94 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp HHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eeccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 666666667888888863 2222 432 32 1 22233467877653
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.07 E-value=0.00016 Score=65.03 Aligned_cols=85 Identities=11% Similarity=0.060 Sum_probs=54.4
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC--eeee-eEE-Ee--c
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH--Q 480 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G--~~~~-gv~-~~--~ 480 (776)
..+|||+++++. ..+....++||.+.+++.||+||+.+.+.++.... .....+.+++.+. ..+- |-. +. .
T Consensus 34 g~~DpYv~v~l~---~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 109 (132)
T d1a25a_ 34 GLSDPYVKLKLI---PDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISE 109 (132)
T ss_dssp SCCCEEEEEEEE---SCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred CCcCeEEEEEEc---cCCCCccccEEeeecCCCCCccceEEEEEeEcccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHH
Confidence 357999999983 34445567899999999999999988887764332 2245677777763 2222 333 22 1
Q ss_pred -CCcccccccccccCCC
Q 004056 481 -PGSEVAQTWEPRKGKN 496 (776)
Q Consensus 481 -pg~~~~~~W~~~~~~~ 496 (776)
+..+ ..+|-++...+
T Consensus 110 l~~~~-~~~W~~L~~~~ 125 (132)
T d1a25a_ 110 LQKAG-VDGWFKLLSQE 125 (132)
T ss_dssp HTTCC-EEEEEECBCHH
T ss_pred cCCCC-CCeEEECCCCC
Confidence 2222 36787776543
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.00057 Score=61.95 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=53.6
Q ss_pred ceEEEEEEEEEec------------CC------CccCCCcccccccccCCCCcccccccceeecCCCceEEEeccccc-C
Q 004056 391 IGRLHLAITVLEE------------SA------KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSS-V 451 (776)
Q Consensus 391 ~GeI~LsL~~~~~------------~~------k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~-L 451 (776)
.|+|+++|+|.+. ++ ...+|||+++++.. . +..+.||.+++++.||+||+.+.+. +
T Consensus 8 ~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~---~--~~~~~kT~v~~~t~nP~wne~f~f~~~ 82 (138)
T d1ugka_ 8 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP---E--KKHKVKTRVLRKTLDPAFDETFTFYGI 82 (138)
T ss_dssp CCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEET---T--TCSEEECCCCSSCSSCEEEEEEEEECC
T ss_pred CEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcC---C--CCEeEeCeeEeCCCCCceeeEEEEeee
Confidence 5777777777543 11 12368999999842 2 2245789999999999999988774 6
Q ss_pred CCCCCCCCCCceEEEEecC
Q 004056 452 SSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 452 p~~~~~~~~d~~~vi~~~G 470 (776)
+..+.......+.+++.+.
T Consensus 83 ~~~~l~~~~L~~~V~d~d~ 101 (138)
T d1ugka_ 83 PYTQIQELALHFTILSFDR 101 (138)
T ss_dssp CSTTGGGCEEEEEEEEECS
T ss_pred CHHHcccceEEEEEEECCC
Confidence 6666667777888888873
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.35 E-value=0.00074 Score=60.96 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=44.3
Q ss_pred ccCCCcccccccccCCC------CcccccccceeecCCCceEEEeccccc-CCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMG------NKEDQSNKEDIRESFANETTDKGSFSS-VSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~------gkrlkKKKT~vkk~t~nP~~n~~~a~~-Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++++...... +....++||.+.+++.||+||+.+.+. ++..+.......+.+++++
T Consensus 37 g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 106 (142)
T d1rh8a_ 37 GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYD 106 (142)
T ss_dssp SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEEC
T ss_pred CCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCCEEEEEEEEec
Confidence 45799999988422111 112235689899999999999988775 5555556667788899887
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.011 Score=52.38 Aligned_cols=74 Identities=12% Similarity=-0.076 Sum_probs=43.3
Q ss_pred EEEEEEec-C-CCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 396 LAITVLEE-S-AKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 396 LsL~~~~~-~-~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
|+++++.+ . .+...|||+++.+.....+.++..++++.+++++.||+||+..++........-....|+|++.+
T Consensus 3 l~V~Visaq~L~~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d 78 (122)
T d2zkmx2 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 78 (122)
T ss_dssp EEEEEEEEESCCSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred EEEEEEEeeCCCCCCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence 44444544 1 23457999999885221223333445555567789999998644443323333345678888875
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.068 Score=46.46 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=39.9
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecC
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG 470 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G 470 (776)
..|||+++.+ .+...+++||.+.+++.||.||+.+.+.+. ........+.+++.+.
T Consensus 26 ~~Dpyv~v~l-----~~~~~~~~~T~~~~~t~nP~wne~f~f~i~--~~~~~~L~v~V~d~d~ 81 (126)
T d1rlwa_ 26 TPDPYVELFI-----STTPDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMDANY 81 (126)
T ss_dssp CCCEEEEEEC-----TTSTTCCEECCCCTTCSSCEEEEEEEEEEC--TTSCCEEEEEEEECCS
T ss_pred CCCcEEEEEE-----CCcccceeEeeecCCCccceeceeeeeccc--CcccCcEEEEEEECCC
Confidence 5799999877 233345688999999999999998776653 2233345677777763
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.13 E-value=0.045 Score=48.23 Aligned_cols=57 Identities=4% Similarity=-0.073 Sum_probs=38.4
Q ss_pred CccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 406 KGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 406 k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...+|||+++++... ....++++|.+++++.||+||+.+-+.+.. .....+.+.+.+
T Consensus 21 ~~~~dPY~~v~l~~~---~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d 77 (123)
T d1bdya_ 21 DDASQPFCAVKMKEA---LTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA 77 (123)
T ss_dssp CCSCCCEEEEEEEEE---CCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET
T ss_pred CCCCCCEEEEEEcCc---cccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc
Confidence 346899999998422 112234678889999999999877665532 224566666665
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.063 Score=46.88 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=45.3
Q ss_pred ceEEEEEEEEEec------CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceE
Q 004056 391 IGRLHLAITVLEE------SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFE 464 (776)
Q Consensus 391 ~GeI~LsL~~~~~------~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~ 464 (776)
-|.|.+.+ ..+ .....+|||+++.+. + .++||.+.+++.||+||+.+.+.++.. .....+.
T Consensus 5 ~G~L~V~v--~~A~~L~~~d~~g~~Dpyv~v~~~-----~---~~~~T~~~~~t~nP~wne~f~f~v~~~---~~~L~i~ 71 (126)
T d2ep6a1 5 VGILQVKV--LKAADLLAADFSGKSDPFCLLELG-----N---DRLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLEVT 71 (126)
T ss_dssp SEEEEEEE--EEEESCCCSSSSSCCCEEEEEEET-----T---EEEECCCCSSCSSCCCCEEEEEEESCT---TCEEEEE
T ss_pred cEEEEEEE--EEeECCCCCCCCCCcCeEEEEEcC-----C---eEEEEEeeCCceeEEEEEEEEEEEecc---CceeEEE
Confidence 57665555 333 223467999999873 2 257889999999999999888877532 2345677
Q ss_pred EEEec
Q 004056 465 PINIE 469 (776)
Q Consensus 465 vi~~~ 469 (776)
+++.+
T Consensus 72 V~d~~ 76 (126)
T d2ep6a1 72 VFDED 76 (126)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 77765
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.061 Score=47.78 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=37.6
Q ss_pred cCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 408 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 408 ~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..|||+++.+. + +++||.+++++.||+||+.+.+.+... ....+.+++.+
T Consensus 26 ~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~wne~f~f~~~~~----~~l~~~V~d~d 75 (133)
T d2nq3a1 26 GPSPYVEVTVD-----G---QSKKTEKCNNTNSPKWKQPLTVIVTPV----SKLHFRVWSHQ 75 (133)
T ss_dssp CCCEEEEEEET-----T---EEEECCCCSSCSSCEEEEEEEEEECTT----CEEEEEEEECC
T ss_pred CcCeEEEEEEC-----C---eEEeeEEEEecccEEEcceEEEEEEec----ceeEEEEEEcc
Confidence 57999999772 2 247888999999999999877766432 34667788876
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.34 E-value=0.12 Score=45.92 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=49.6
Q ss_pred EEEEEec---CCCccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEecCeee
Q 004056 397 AITVLEE---SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE 473 (776)
Q Consensus 397 sL~~~~~---~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~G~~~ 473 (776)
.+++..+ ..+...|||+.+.+. + .+.+|.+.++ .||+||+.+.+.+... .....+.+++.+-..+
T Consensus 5 ~V~v~~a~~l~~~~~~dpYv~l~~~-----~---~k~~T~~~k~-~nP~Wne~f~f~v~~~---~~~L~v~V~d~~~~~d 72 (128)
T d2cjta1 5 CVGVKKAKFDGAQEKFNTYVTLKVQ-----N---VKSTTIAVRG-SQPSWEQDFMFEINRL---DLGLTVEVWNKGLIWD 72 (128)
T ss_dssp EEEEEEEECSSCGGGCEEEEEEEET-----T---EEEECCCEES-SSCEEEEEEEEEECCC---SSEEEEEEEECCSSCE
T ss_pred EEEEEEEECCCCCCCcCeEEEEEeC-----C---EEEEEEEecC-CCCeEEEEEEEeeccc---cceEEEEEEeCCCcCC
Confidence 3444444 334567999998772 1 2567777765 4999999988887432 2234677777653233
Q ss_pred e--eEE-Ee-----cCCcccccccccccCCC
Q 004056 474 T--GIW-VH-----QPGSEVAQTWEPRKGKN 496 (776)
Q Consensus 474 ~--gv~-~~-----~pg~~~~~~W~~~~~~~ 496 (776)
. |.. +. ..+.+...+|-++..+.
T Consensus 73 ~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~ 103 (128)
T d2cjta1 73 TMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA 103 (128)
T ss_dssp EEEEEEEEEGGGSCBCSSCCCCEEEECBC--
T ss_pred cceEEEEEEehhhccCCCCCCCeeEECCccc
Confidence 3 432 22 12222335677665544
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.23 E-value=0.13 Score=45.27 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=36.7
Q ss_pred ccCCCcccccccccCCCCcccccccceee-cCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vk-k~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
..+|||+++.+.. .. ....++||.+. +++.||.||+.+.+.+..... ....+.+++.+
T Consensus 25 ~~~DPyV~v~l~g--~~-~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~--~~L~~~V~D~d 83 (131)
T d1qasa2 25 SIVDPKVIVEIHG--VG-RDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVEDYD 83 (131)
T ss_dssp -CCCEEEEEEEES--ST-TTCEEEECCCCSSCSSSCEEEEEEEEEESCGGG--CEEEEEEEECC
T ss_pred CCcCeEEEEEEcc--CC-CCcEEEEEEEEecccCCceEEEEEEEEEEcchh--ceEEEEEEEec
Confidence 3479999998841 11 12245667755 455899999987776543332 23467888887
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.94 E-value=0.26 Score=43.24 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=41.4
Q ss_pred CceEEEEEEEEEec----CCCccCCCcccccccccCCCCcccccccceeec-CCCceEEEecccccCCCCCCCCCCCceE
Q 004056 390 KIGRLHLAITVLEE----SAKGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFE 464 (776)
Q Consensus 390 ~~GeI~LsL~~~~~----~~k~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk-~t~nP~~n~~~a~~Lp~~~~~~~~d~~~ 464 (776)
..|.|.+.+.--.. +....+|||+++.+. ++ +.+|.+.+ ++.||+||+.+.+.+.... ....+.
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~-----~~---~~~t~~~~~~~~nP~Wne~f~f~v~~~~---~~L~v~ 76 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR-----TQ---DQKSNVAEGMGTTPEWNETFIFTVSEGT---TELKAK 76 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS-----SC---EEECCCCTTCCSSCEEEEEEEEEEESSC---CEEEEE
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe-----ee---eEEEEEEecCCCcEEEeeEEEEEEcCcc---ceEEEE
Confidence 35766666522111 223568999999773 21 34555554 6899999998777765321 224566
Q ss_pred EEEec
Q 004056 465 PINIE 469 (776)
Q Consensus 465 vi~~~ 469 (776)
+++.+
T Consensus 77 V~d~d 81 (136)
T d1wfja_ 77 IFDKD 81 (136)
T ss_dssp ECCSS
T ss_pred EEEec
Confidence 66665
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=82.85 E-value=0.35 Score=42.71 Aligned_cols=52 Identities=4% Similarity=-0.036 Sum_probs=36.3
Q ss_pred ccCCCcccccccccCCCCcccccccceeecCCCceEEEecccccCCCCCCCCCCCceEEEEec
Q 004056 407 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE 469 (776)
Q Consensus 407 ~~~dP~vkv~L~~e~~~gkrlkKKKT~vkk~t~nP~~n~~~a~~Lp~~~~~~~~d~~~vi~~~ 469 (776)
...|||+++.+.. . ..+||.+++++.||+||+.+.++++.. ....+.+++.+
T Consensus 36 ~~~DPYv~v~l~~-----~--~~~~T~~~~~t~~P~Wne~f~f~v~~~----~~l~i~V~d~~ 87 (136)
T d1gmia_ 36 FLLDPYIALNVDD-----S--RIGQTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDA 87 (136)
T ss_dssp CCCCEEEEEEETT-----E--EEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECC
T ss_pred CCcCcEEEEEeCC-----C--cCcEeeEEcCCCCccCccEEEEEEecC----CceEEEEEEec
Confidence 3579999998832 1 345788889999999999888877532 23455566555
|