Citrus Sinensis ID: 004063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770------
Protein Sequence
MASAQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccHHHHHHHccccHHHcccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcccccEccccccccccEEEEEccccccccccccccEEEcEEEEccccccccccccccccccccccccccccccccccHHcEEEEEEcccccccccccccccccccccccccccccccEcccccccccccEccccccccccccccccccccccccccEcEccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHccccccccccccccccccccccccccHcccccccccHcccccHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHHHHHHHcccccccccHcccccHHHHHHHHHHccccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccHHHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
masaqasdfslhdqhhleadrvrvtdldgagtsdgpdkavvslplvmhnddnKALKLAQQSQqvslsdkrinsncfendlnssSAYLAQTYsnnqetsgsagpvnvsnsqetkdvnndFVIYssgqgrlrdgimsnqflsllpeasqdydssnssksgfqgieesqskgndsfpkvptlvnsgpshdfvtkispqnsvstlfqskpsnaialgnghsfhsssegtahlttstggsasevglntpsttnfsdpvsfntgegkpsnsasglaslqstpfkrseysgynfdagnsfnhvpvssatnkftlgkSRASfldslnvprassgtlfeqteperdsfmsssslnsmdvlgsspaqnpsmekettgafsktttsnipsafdylgnptvstsdrgdirrlgsnessienqhgfystkhnEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAenssltdsynQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedlaitdttldnsnqdthddaslpridasgstllpesgrLALEGlavniphdqmRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNManenisfrqpdsasthdhtayadegDEVVERVLGWIMKlfpggpsrrrtskll
Flexible Loop (DISEMBL)
masaqasdfslhdqhhlEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSnsqetkdvnnDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESqskgndsfpkVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFldslnvprassgtlfeqteperDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAaenssltdsynqQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASevigleekalrlrsnelklerqlensqseisSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRkasgsgksidfgktaastvnaststedLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWImklfpggpsrrrtskll
Low Complexity Region (SEG)
MASAQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAsqdydssnssksGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERdsfmsssslnsmdvlgssPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQrsleasralseslaaensslTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENsqseissykkkisslekeRQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKtaastvnaststEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Disordered region (IsUnstruct)
*********************************************************************************************************************DFVIYSS************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE***************************************************************************************************************************LALEGLAVNIPHDQMRMIHNINALISELALEK*******************************************************************GDEVVERVLGWIMKLF*************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************EVVERVLGWIM****************
Disordered Region (DISEMBL)
***********HDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKL***********KRINSNCFENDLNSSSAYLAQTYS**************SNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEA**************************SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFN*****************STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFE**************LNSM**********************KTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE****************************STIEALQEE****************SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFR***********AYADEGDEVVERVLGWIMKLFPGG**********
Disordered Region (DISPRO)
*******************DRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNN********P*NV****ETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLP**************GFQ**E**QSKGNDSFPKVPTLVNSGPSHDFV*K****************NAIA*************TAHLTTSTGGSASE********TNFSDPVSFNTGEG**********************************************************************************************************************************TSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG***********************************************************ALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA*E******************ADEGDEVVERVLGWIMKLFPG***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASAQASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYxxxxxxxxxxxxxxxxxxxxxxxxxxxxLEASRALSESLAAENSSLTDSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKILASEVIGLEEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
225433351	804	PREDICTED: uncharacterized protein LOC10	0.966	0.932	0.532	0.0
356533381	784	PREDICTED: uncharacterized protein LOC10	0.934	0.924	0.491	1e-172
297831252	728	hypothetical protein ARALYDRAFT_898989 [	0.640	0.682	0.554	1e-143
255554298	713	conserved hypothetical protein [Ricinus	0.856	0.932	0.456	1e-142
145338880	714	protein BLISTER [Arabidopsis thaliana] g	0.694	0.754	0.520	1e-141
125528809	760	hypothetical protein OsI_04881 [Oryza sa	0.641	0.655	0.485	1e-109
242055353	770	hypothetical protein SORBIDRAFT_03g04350	0.568	0.572	0.487	1e-109
115441767	760	Os01g0911800 [Oryza sativa Japonica Grou	0.643	0.656	0.481	1e-109
414879058	748	TPA: hypothetical protein ZEAMMB73_30879	0.587	0.609	0.482	1e-109
147843847	443	hypothetical protein VITISV_004427 [Viti	0.377	0.661	0.679	1e-104

>gi|225433351|ref|XP_002282738.1| PREDICTED: uncharacterized protein LOC100251145 [Vitis vinifera] gi|297741880|emb|CBI33315.3| unnamed protein product [Vitis vinifera]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/785 (53%), Positives = 527/785 (67%), Gaps = 35/785 (4%)

Query: 5   QASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQV 64
           Q++D SL  Q  LE ++VRV D DGAG SDG  +AV  +     N+DNK +++ Q S+  
Sbjct: 42  QSADVSLCVQP-LENEQVRVMDSDGAGISDGVGEAVTKVI----NNDNKKIEIFQNSEPC 96

Query: 65  SLSDKRINSNCFENDLNSSSAYLAQTYSNNQ-----ETSGSAGPVNVSNSQETKDVNNDF 119
           S SD          D  + SA   QT  N+Q     + SG  G V     Q  K+ N+D 
Sbjct: 97  S-SDIYAKPPFSTKDYKAFSADSVQTQVNDQGFNRYDASGFLGLVG----QLAKEKNDDG 151

Query: 120 VIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTL 179
            I++  +G   + I+S+Q ++  P+A +D DSS SS+S F  +EE+Q K + S  K  T+
Sbjct: 152 GIHAGAEGSAYE-IVSDQSIAF-PQAIRDTDSS-SSQSNFHRMEETQQKDHKSSLKSFTV 208

Query: 180 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGN-GHSFHSSSEGTAHLTTSTGGSASE 238
           ++ G S   +   S +NS          NAI   N G++   SS  + H  T+   SA  
Sbjct: 209 IDPGISQVPLANASSENS---------GNAILPNNYGYANMKSSADSVHPITTAKQSAFG 259

Query: 239 VGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ-STPFK-RSEYSGYNFDAGNSFNHV 296
           VG + P + +F+  +  N  + K S+S   L S   ++P    S  + + FD   S NH+
Sbjct: 260 VGQDVPGSVDFNVHMLSNKEDKKLSSSFGYLPSTHGASPLASESSSTSFAFDVRGSSNHL 319

Query: 297 PVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDS--FMSSSSLNSMDVLGSS 354
           P+ S T +    +SR SFLDS+NVPR  S +    TEP +    F SSS +NSMDVLGSS
Sbjct: 320 PLYSVTPETNARRSRPSFLDSINVPRVPSASHLPLTEPGKAEPFFSSSSKVNSMDVLGSS 379

Query: 355 PAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFY 414
            +     E E    FSK   SN PS FD+  N +VS  +R ++ R G +++S+E +  F+
Sbjct: 380 ASTKSLAESENFEPFSKAGNSNGPSLFDHSINSSVSVGNRVEMLRHGLDQNSLERKFEFH 439

Query: 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 474
           S K NEDFAALEQHIEDLTQEKF+LQR+LEASRAL+ESLAAENSSLTDSYNQQ SVVNQL
Sbjct: 440 SQKQNEDFAALEQHIEDLTQEKFSLQRALEASRALAESLAAENSSLTDSYNQQGSVVNQL 499

Query: 475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534
           KS+MEKLQEEIK QLV+LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+E
Sbjct: 500 KSDMEKLQEEIKAQLVDLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSE 559

Query: 535 LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID 594
           LKLERQLENS +EISS+KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID
Sbjct: 560 LKLERQLENSNAEISSFKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSID 619

Query: 595 FGKTAASTVNASTSTEDLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLAL 651
             K+     + STST+DL   D      + S+ +  + AS+   + S   LLP+ G++  
Sbjct: 620 ASKSPTDRKDVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNF 679

Query: 652 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 711
           E  +VNIP DQMRMI NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE Q
Sbjct: 680 EVSSVNIPADQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQ 739

Query: 712 TQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRR 771
           TQRLELLT+Q+MANE I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RR
Sbjct: 740 TQRLELLTSQSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRR 799

Query: 772 TSKLL 776
           TSKLL
Sbjct: 800 TSKLL 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533381|ref|XP_003535243.1| PREDICTED: uncharacterized protein LOC100817279 [Glycine max]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 383/779 (49%), Positives = 507/779 (65%), Gaps = 54/779 (6%)

Query: 7   SDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVV-SLPLVMHNDDNKALKLAQQSQQVS 65
           SD SL+ +   E + VRV + DG  TSD    +V  +  L M ND N  L  +Q S Q S
Sbjct: 51  SDDSLNKKQSSEVENVRVNESDGVTTSDAVGGSVTDTSTLGMRNDKNLNL-FSQSSNQGS 109

Query: 66  LSDKRINSNCFENDLNSSSAYLAQTYSNNQE-----TSGSAGPVNVSNSQETKDVNNDFV 120
           L+          NDLN SS  L + +SN  E      S      + S + E   VN+ + 
Sbjct: 110 LAGSTF---LTRNDLNMSSTSLGEAHSNIDEGKRYNASSVTASADFSQNNERNKVNDIYG 166

Query: 121 IYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLV 180
           I++ G   +     ++Q + L  + SQ++D  N + S   G+ ++QS  ++S  K   + 
Sbjct: 167 IHAVGVDGIPYVTTNHQSVPLCSQESQEFD--NHATSSLHGVNDNQSNKSNSSLKDYAVT 224

Query: 181 NSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVG 240
           ++  S+ F +KI+PQNSV T  Q KP+N+    +G+S                 S    G
Sbjct: 225 DNFSSY-FPSKITPQNSVDTPLQIKPTNSSTFDSGYSH----------------SLLSGG 267

Query: 241 LNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSS 300
            +   ++ F + V+         +S + L SL      + + +GY  +A NS NH P+ S
Sbjct: 268 FSDSFSSKFRETVT---------SSDNNLPSLHGATMPKYDSTGY--EARNSSNHTPIHS 316

Query: 301 ATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSS---SSLNSMDVLGSSPAQ 357
              + +  +SR SFLDSLNV R S G+ F Q+E  +DS MS+   SS N  D+ GS+   
Sbjct: 317 LPTESSSRRSRPSFLDSLNVTRPSLGSPFHQSE--QDSLMSNYLESSSN--DISGSAYFH 372

Query: 358 NPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTK 417
            PS E +    FS  TT+N+ S+ + L  P+V  +D        + ES +E +H +YS+ 
Sbjct: 373 KPSEETKIMPLFSNFTTANVHSSLEPLTTPSVVDNDNQGALITSTRESGMEKKHDYYSSS 432

Query: 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 477
            NEDF ALEQHIEDLT+EKF+LQR+LEASR L+ESLA ENS+LTD+YNQQRSVVNQLKS+
Sbjct: 433 QNEDFTALEQHIEDLTKEKFSLQRALEASRTLAESLATENSTLTDNYNQQRSVVNQLKSD 492

Query: 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 537
           ME L E+IK +LVELE+ ++EY N +LECNAADERAK+LASEVIGLEEKALRLRS+ELKL
Sbjct: 493 MENLHEDIKARLVELEAIKSEYTNAQLECNAADERAKLLASEVIGLEEKALRLRSSELKL 552

Query: 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGK 597
           E+QLEN++ EISSY+KK+SSL+K+R D QSTIEALQEEKKM+ SKLRKASG GKSI+   
Sbjct: 553 EKQLENAKEEISSYRKKMSSLDKDRHDLQSTIEALQEEKKMLLSKLRKASGIGKSIE--- 609

Query: 598 TAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 657
              S  + STSTEDLA  D   ++SN + +D+A+    +AS  + + E+   +     VN
Sbjct: 610 NQTSKRDVSTSTEDLASEDPASNSSNPEINDNAA----EASSLSSVTETRHSSFGVSPVN 665

Query: 658 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 717
           IPHDQMRMI NINALISELALEKEEL++AL+SE ++ S++K++N ELSRKLE QTQRLEL
Sbjct: 666 IPHDQMRMIENINALISELALEKEELIKALTSESSECSRMKEINMELSRKLEVQTQRLEL 725

Query: 718 LTAQNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           LTAQ+M NENIS +QPDS + +++T+YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 726 LTAQSMVNENISAKQPDSRAMYENTSYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 784

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831252|ref|XP_002883508.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata] gi|297329348|gb|EFH59767.1| hypothetical protein ARALYDRAFT_898989 [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 288/519 (55%), Positives = 378/519 (72%), Gaps = 22/519 (4%)

Query: 261 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNV 320
           KP+ S+S L     T  + SE S ++    N  +  P++SA ++  + +SR SFLDSLN+
Sbjct: 229 KPTLSSSYLFRSPDTSSRPSESSDFSV---NFTSSSPLNSAKSEAIVKRSRPSFLDSLNI 285

Query: 321 PRASSGTLFEQTEPERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPS 379
            RA   T ++  E + D   SS S L   D  G S     S  +++ G    +  S+ P+
Sbjct: 286 SRAPE-TQYQHPEIKADLVTSSGSQLTGSDGFGPSYI---SGRRDSNGPSLTSGASDSPN 341

Query: 380 AFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFAL 439
            F+   +P    ++             +     F   K N+DF ALEQHIEDLTQEKF+L
Sbjct: 342 PFEKFRSPLYPAAN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSL 390

Query: 440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499
           QR L+ASRAL+ESLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+VQ+ ELES R EY
Sbjct: 391 QRDLDASRALAESLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQVQMGELESVRIEY 450

Query: 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 559
           AN +LECNAADER++ILASEVI LE+KALRLRSNELKLER+LEN+Q+E+ SYKKK+ SLE
Sbjct: 451 ANAQLECNAADERSQILASEVISLEDKALRLRSNELKLERELENAQAEMLSYKKKLQSLE 510

Query: 560 KERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTL 619
           K+RQD QSTI+ALQEEKK++Q+ ++KAS  GKS D  KT+ S  NASTSTE LAI+DTT 
Sbjct: 511 KDRQDLQSTIKALQEEKKVLQTMVQKASSGGKSTDLSKTSTSRKNASTSTEGLAISDTTP 570

Query: 620 DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE 679
            +SNQ+T D A+L   D+S + ++PE+G+L LEG ++++P DQMR+IHNIN LI+ELA+E
Sbjct: 571 KSSNQET-DSATLLESDSSNTAIIPETGQLTLEGFSLSVPADQMRVIHNINTLIAELAIE 629

Query: 680 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSAS 737
           KEELVQALSSEL++S+++++LN ELSRKLE QT+RLEL+TAQ MA +N+S   +Q DS  
Sbjct: 630 KEELVQALSSELSRSAQVQELNKELSRKLEAQTKRLELVTAQKMAIDNVSPEKQQLDSHV 689

Query: 738 THDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
             + T  ADEGDEVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 690 VQERTPIADEGDEVVERVLGWIMKMFPGGPSKRRTSKLL 728

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554298|ref|XP_002518189.1| conserved hypothetical protein [Ricinus communis] gi|223542785|gb|EEF44322.1| conserved hypothetical protein [Ricinus communis]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 353/773 (45%), Positives = 448/773 (57%), Gaps = 108/773 (13%)

Query: 6   ASDFSLHDQHHLEADRVRVTDLDGAGTSDGPDKAVVSLPLVMHNDDNKALKLAQQSQQVS 65
           +S  S++++  LE++ VR+TD DGAGTSDGP +  VS   +    D  A+  +    +  
Sbjct: 47  SSVVSVNEKQALESEIVRLTDSDGAGTSDGPIEVTVSGTTL---KDADAIPPSMSHYKAP 103

Query: 66  LSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDVNNDFVIYSSG 125
           L+D  +NS+ F    N+S A                   +     ET  +NND   YS  
Sbjct: 104 LADIHVNSHDFTRP-NASVA------------------ADAKYDIETDQMNNDTDTYSGS 144

Query: 126 Q-GRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGNDSFPKVPTLVNSGP 184
           Q G +   I+S++  S+ P + + +    S    FQ +E + S  + +F        + P
Sbjct: 145 QDGVVPYVILSSRHSSIPPPSQESF----SQSIPFQSMEYNTSLKDYAF--------TAP 192

Query: 185 SHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTP 244
           S    TKIS             SNA  L     F        H     G S     L   
Sbjct: 193 S-PLQTKIS-------------SNASTLVTDVDF------IQHNNNLRGSS-----LEVE 227

Query: 245 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNK 304
              +F+  +  + GE   S S  G  S      + S+  GY+ D+ +S NH  + S T++
Sbjct: 228 QDKHFNGSLRNDFGEANFSISLGGFPSAYGKSMQTSDTIGYDSDSKSSSNHTQLLSGTSE 287

Query: 305 FTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKE 364
               +SR SFLDSLNV RASSGT F+ TE +++SFM   S N M  L SS  QN S+E +
Sbjct: 288 PNSRRSRPSFLDSLNVTRASSGTSFQPTELQKESFMPGKS-NGMGALDSSTFQNLSVEAQ 346

Query: 365 TTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAA 424
           T G                  +P   ++    +     +E+S   +H FYS+KHNEDFAA
Sbjct: 347 TLG-----------------HHPMTFSASSNSVEMSNIDENSWGRKHEFYSSKHNEDFAA 389

Query: 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484
           LEQHIEDLTQEKF+LQR+LE+SRAL+ESLAAENSSLTD+YNQQRS VNQLKS+MEKLQEE
Sbjct: 390 LEQHIEDLTQEKFSLQRALESSRALAESLAAENSSLTDNYNQQRSAVNQLKSDMEKLQEE 449

Query: 485 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 544
           IKV LVELES + EY N +LEC+A+DERAKILASEVIGLEEK        + L       
Sbjct: 450 IKVHLVELESVKMEYGNAKLECDASDERAKILASEVIGLEEKVFNFF---VML------- 499

Query: 545 QSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 603
               S++  ++S  L      F  T      EKK++QSKLRKAS SGKS+D  + + +  
Sbjct: 500 ---FSTFTTQVSLVLCFNNCQFYDT------EKKLLQSKLRKASASGKSLDISQNSGNKK 550

Query: 604 NASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQM 663
           + STSTED       LD  N++T D  +L   D     + PE+G+  LE   V+IP DQM
Sbjct: 551 DMSTSTED-------LDPCNEETVDTTALIGNDI---PIHPENGQSNLEVSTVHIPADQM 600

Query: 664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM 723
           R+I NIN LISELALEKEEL+QALSSE +Q S+LKDLNNELSRKLE QTQRLELLTAQ+M
Sbjct: 601 RLIENINTLISELALEKEELMQALSSESSQCSRLKDLNNELSRKLEAQTQRLELLTAQSM 660

Query: 724 ANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           ANENI  R PDS +  + T YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL
Sbjct: 661 ANENIQARLPDSHAMQETTTYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 713

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145338880|ref|NP_189040.3| protein BLISTER [Arabidopsis thaliana] gi|9294667|dbj|BAB03016.1| unnamed protein product [Arabidopsis thaliana] gi|332643320|gb|AEE76841.1| protein BLISTER [Arabidopsis thaliana]

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 295/567 (52%), Positives = 393/567 (69%), Gaps = 28/567 (4%)

Query: 214 NGHSFHSSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQ 273
           +G    SS + +   TT   GS  EV  N   +      +       KP+ S+S L +  
Sbjct: 172 HGSGLTSSRKDSLQPTTRMAGSFDEVAKNQQGSGELGGSIV-----QKPTLSSSYLFNSP 226

Query: 274 STPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTE 333
            T  + SE S ++ +  +S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++  E
Sbjct: 227 DTSSRPSEPSDFSVNITSS---SPLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQHPE 282

Query: 334 PERDSFMSSSS-LNSMDVLGSSPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVST 391
            + D   SS S L+  D  G S     S  +++ G  S T+  S+ P+ F+   +     
Sbjct: 283 IQADLVTSSGSQLSGSDGFGPSYI---SGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPA 339

Query: 392 SDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSE 451
           ++             +     F   K N+DF ALEQHIEDLTQEKF+LQR L+ASRAL+E
Sbjct: 340 AN-----------GVMPGFTDFSMPKQNDDFTALEQHIEDLTQEKFSLQRDLDASRALAE 388

Query: 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 511
           SLA+ENSS+TD+YNQQR +VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADE
Sbjct: 389 SLASENSSMTDTYNQQRGLVNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADE 448

Query: 512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 571
           R++ILASEVI LE+KALRLRSNELKLER+LE +Q+E+ SYKKK+ SLEK+RQD QSTI+A
Sbjct: 449 RSQILASEVISLEDKALRLRSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKA 508

Query: 572 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDAS 631
           LQEEKK++Q+ ++KAS  GKS D  K + S  N STSTE LAI+DTT ++SNQ+T D  +
Sbjct: 509 LQEEKKVLQTMVQKASSGGKSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTT 567

Query: 632 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSEL 691
           L   D+S + ++PE+ +L LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL
Sbjct: 568 LLESDSSNTAIIPETRQLTLEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSEL 627

Query: 692 AQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGD 749
           ++S+ +++LN ELSRKLE QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGD
Sbjct: 628 SRSAHVQELNKELSRKLEAQTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGD 687

Query: 750 EVVERVLGWIMKLFPGGPSRRRTSKLL 776
           EVVERVLGWIMK+FPGGPS+RRTSKLL
Sbjct: 688 EVVERVLGWIMKMFPGGPSKRRTSKLL 714

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125528809|gb|EAY76923.1| hypothetical protein OsI_04881 [Oryza sativa Indica Group]

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 257/529 (48%), Positives = 339/529 (64%), Gaps = 31/529 (5%)

Query: 261 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 312
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 313 SFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKT 372
           SFLDS+ V RA + T     EP + S    +S NS       P Q  +   +  G+  K+
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNS-NSESSFFQPPNQQSAGSNDVDGSL-KS 361

Query: 373 TTSNIPSAFDYLGNPTVSTS-DRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED 431
                 +     GN   + S    D R L  +    +N   F     ++DFAALEQ IED
Sbjct: 362 GRQEYNNEKGSYGNSIRTDSFPSKDERNLHHSTQMFQN---FTIPGKDDDFAALEQLIED 418

Query: 432 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 491
           LT+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+ME+LQ EI+ QL+ 
Sbjct: 419 LTKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLA 478

Query: 492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551
           LES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY
Sbjct: 479 LESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSY 538

Query: 552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTED 611
           ++K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K +A   +AST+TED
Sbjct: 539 RRKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTATED 598

Query: 612 LAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGLAVNIPHDQMRMIH 667
           L   +++   +     D          G T +  S  +A    LE ++ +IPHDQ+RMI 
Sbjct: 599 LDTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEVSSSIPHDQLRMID 652

Query: 668 NINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANEN 727
           NIN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT RLELL++Q MANEN
Sbjct: 653 NINSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHRLELLSSQRMANEN 712

Query: 728 ISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           +  +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 713 VLPKPIDTRSINDATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 760

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242055353|ref|XP_002456822.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor] gi|241928797|gb|EES01942.1| hypothetical protein SORBIDRAFT_03g043500 [Sorghum bicolor]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/513 (48%), Positives = 331/513 (64%), Gaps = 72/513 (14%)

Query: 297 PVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSFMSS-------------- 342
           P  S+    T  +SR SFLDS+ V RA   T     EP + + +SS              
Sbjct: 297 PFLSSGYPTTYTRSRPSFLDSIGVQRAPPTTQASYREPAKTNQLSSNLNYQSPFLQQSNQ 356

Query: 343 --SSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL 400
             +  N+ D+  +S +Q  S EK + G+      SN P   D+                L
Sbjct: 357 QSTGSNATDISFASESQKYSHEKGSYGS------SNPP---DF---------------SL 392

Query: 401 GSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA 454
              E SI  QHG      F +   ++DFAALEQ IEDLT+EKF+LQR+++ S+ L+E+LA
Sbjct: 393 PKEERSI--QHGNQTFQNFTTHGKDDDFAALEQLIEDLTKEKFSLQRTVQKSQELAETLA 450

Query: 455 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 514
            +NS+LTD +NQQ  +++QL S+ME+LQEEI+ QL+ LES R EYAN +LECNAADERAK
Sbjct: 451 TDNSALTDKFNQQAHIISQLTSDMERLQEEIQAQLLALESVRTEYANAQLECNAADERAK 510

Query: 515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574
           +LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY++K+SSLEKERQ  QST+EALQE
Sbjct: 511 VLAAEVILLEDKALRLRSSELKLEKEIEGLHSEISSYRRKVSSLEKERQHLQSTVEALQE 570

Query: 575 EKKMMQSKLRKASGSGKSIDFGKTAASTV--------NASTSTEDL---AITDTTLDNSN 623
           EKK++ SKLR       +I   + A +TV        +AST+TEDL    ++ +    S 
Sbjct: 571 EKKLLYSKLR-------NIPMNERATTTVEKPSVEKRDASTATEDLDTGELSSSETLTST 623

Query: 624 QDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEEL 683
            DT +DA      ++  +  P     +LE ++ +IP DQ+RMI NIN+L+SELA+E+EEL
Sbjct: 624 VDTLEDAGTSVRRSNIMSDFP-----SLEEVSSSIPDDQLRMIDNINSLMSELAVEREEL 678

Query: 684 VQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSASTHDHTA 743
           ++AL  E +  SKLKDLN +L++KLE QT RLELLT+Q MANEN   +  D+ S +D   
Sbjct: 679 LRALRIESSNCSKLKDLNKDLTQKLEIQTHRLELLTSQRMANENALAKPIDTRSINDAAI 738

Query: 744 YADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 739 YADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 770

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441767|ref|NP_001045163.1| Os01g0911800 [Oryza sativa Japonica Group] gi|20161363|dbj|BAB90287.1| heavy meromyosin-like [Oryza sativa Japonica Group] gi|113534694|dbj|BAF07077.1| Os01g0911800 [Oryza sativa Japonica Group] gi|125573067|gb|EAZ14582.1| hypothetical protein OsJ_04505 [Oryza sativa Japonica Group]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 254/528 (48%), Positives = 335/528 (63%), Gaps = 29/528 (5%)

Query: 261 KPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVS--------SATNKFTLGKSRA 312
           K S+ A GLA   S    R   S +N ++ N+ N  PV         S+    T  +SR 
Sbjct: 250 KDSSQADGLAYASS----REYGSAFN-NSWNTSNSTPVCFDKQDPFMSSGYPTTYNRSRP 304

Query: 313 SFLDSLNVPRASSGTLFEQTEPERDSFMSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKT 372
           SFLDS+ V RA + T     EP + S    +S NS       P Q  +   +  G+    
Sbjct: 305 SFLDSIGVQRAPT-TEVPYVEPAKASKPFGNS-NSESSFFQPPNQQSAGSNDVDGSLKSG 362

Query: 373 TTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDL 432
                     Y  +    +    D R L  +    +N   F     ++DFAALEQ IEDL
Sbjct: 363 RQEYNNEKGSYGNSIRTDSFPSKDERNLHHSTQMFQN---FTIPGKDDDFAALEQLIEDL 419

Query: 433 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 492
           T+EKFALQR+LE S+ L+++LA +NS+LTD +NQQ  V++ L S+ME+LQ EI+ QL+ L
Sbjct: 420 TKEKFALQRTLEKSQELAQTLATDNSALTDKFNQQAQVISNLTSDMERLQNEIQAQLLAL 479

Query: 493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 552
           ES R EYAN +LECNAADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEISSY+
Sbjct: 480 ESVRTEYANAQLECNAADERAKVLAAEVILLEDKALRLRSSELKLEKEIEGLSSEISSYR 539

Query: 553 KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 612
           +K+SSLEKERQ  QST+EALQEEKK++ SKLR  S + K     K +A   +AST+TEDL
Sbjct: 540 RKVSSLEKERQHLQSTVEALQEEKKLLHSKLRNTSVTEKVNIIEKPSADKRDASTATEDL 599

Query: 613 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA----LEGLAVNIPHDQMRMIHN 668
              +++   +     D          G T +  S  +A    LE ++ +IPHDQ+RMI N
Sbjct: 600 DTGESSSSETLTSAIDTVE------DGETSVSRSNNVADFTYLEEVSSSIPHDQLRMIDN 653

Query: 669 INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI 728
           IN+L+SELA+E+EEL++AL  E +  SKLK+LN +L++KLE QT RLELL++Q MANEN+
Sbjct: 654 INSLMSELAVEREELLRALRIESSNCSKLKELNKDLTQKLEIQTHRLELLSSQRMANENV 713

Query: 729 SFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
             +  D+ S +D T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 714 LPKPIDTRSINDATLYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 760

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414879058|tpg|DAA56189.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879059|tpg|DAA56190.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays] gi|414879060|tpg|DAA56191.1| TPA: hypothetical protein ZEAMMB73_308793 [Zea mays]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 331/518 (63%), Gaps = 62/518 (11%)

Query: 284 GYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPER------- 336
           G NF+  +     P  S+    T  +SR SFLDS+ V R    T     EP +       
Sbjct: 268 GVNFERQD-----PFLSSGYPTTYTRSRPSFLDSIGVQRVPPTTQASYREPAKANQLSHN 322

Query: 337 ----DSFMSSS-----SLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNP 387
                SF+  S     S N+ D+  +S +Q  S EK + G      +SN P   D+    
Sbjct: 323 SNYQSSFVKQSNQQPTSSNAADISFASESQEYSHEKGSYG------SSNHP---DF---- 369

Query: 388 TVSTSDRGDIRRLGSNESSIENQHG------FYSTKHNEDFAALEQHIEDLTQEKFALQR 441
                       L   E SI  QHG      F +   ++DFA LEQ IEDLT+EKF+LQR
Sbjct: 370 -----------SLPKEERSI--QHGKQTFQNFATHGKDDDFATLEQLIEDLTKEKFSLQR 416

Query: 442 SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 501
           SL+ S+ L+E+LA +NS+LTD +NQQ  V++QL S+ME+LQEEI+ QL+ LES R EYAN
Sbjct: 417 SLQKSQELAETLATDNSALTDKFNQQAHVISQLTSDMERLQEEIQAQLLALESVRTEYAN 476

Query: 502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE 561
            +LEC+AADERAK+LA+EVI LE+KALRLRS+ELKLE+++E   SEIS+Y++K+SSLEKE
Sbjct: 477 AQLECSAADERAKVLAAEVILLEDKALRLRSSELKLEKEVEGLHSEISAYRRKVSSLEKE 536

Query: 562 RQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL---AITDTT 618
           RQ  QST+EALQEEKK++ SKLR    + ++    K +    +AST TEDL    I+ + 
Sbjct: 537 RQHLQSTVEALQEEKKLLYSKLRNIPVNERATTVEKPSVDKKDASTVTEDLDTGEISSSE 596

Query: 619 LDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELAL 678
              S  D  +DA    + ++  +  P S     E ++ +IP DQ+RMI NIN+L+SELA+
Sbjct: 597 TLTSTVDILEDAGTSVLRSNIVSDFPSS-----EQVSSSIPDDQLRMIDNINSLMSELAV 651

Query: 679 EKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPDSAST 738
           E+EEL++AL  E +  SKLK+LN +L++KLE QTQRLELLT+Q MANEN   +  D+   
Sbjct: 652 EREELLRALRIESSNCSKLKELNKDLTQKLEVQTQRLELLTSQRMANENALAKPIDTRPI 711

Query: 739 HDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           ++ T YADEGDEVVERVLGWIMKLFPGGP +RRTSKLL
Sbjct: 712 NEATMYADEGDEVVERVLGWIMKLFPGGP-KRRTSKLL 748

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843847|emb|CAN79450.1| hypothetical protein VITISV_004427 [Vitis vinifera]

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/296 (67%), Positives = 239/296 (80%), Gaps = 3/296 (1%)

Query: 484 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543
           E +  +V+LESF+ EYAN +LECNAADERAK+LASEVIGLEEKALRLRS+ELKLERQLEN
Sbjct: 148 EKRCLMVDLESFKIEYANAQLECNAADERAKLLASEVIGLEEKALRLRSSELKLERQLEN 207

Query: 544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTV 603
           + +EISS+KKK+SSLEKERQD Q TI+ALQEEKK++Q K+RKAS +GKSID  K+     
Sbjct: 208 TNAEISSFKKKVSSLEKERQDLQLTIDALQEEKKLLQKKVRKASANGKSIDASKSPTDRK 267

Query: 604 NASTSTEDLAITDTTL---DNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 660
           + STST+DL   D      + S+ +  + AS+   + S   LLP+ G++  E  +VNIP 
Sbjct: 268 DVSTSTDDLVNEDNACMIPETSSLEMLNSASVQANELSSFPLLPDGGQMNFEVSSVNIPA 327

Query: 661 DQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA 720
           DQMRMI NINALISELALEKEEL+QAL +E +QSSKLKDLN ELSRKLE QTQRLELLT+
Sbjct: 328 DQMRMIQNINALISELALEKEELMQALVTESSQSSKLKDLNKELSRKLEVQTQRLELLTS 387

Query: 721 QNMANENISFRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPSRRRTSKLL 776
           Q+MANE I  RQPDS   HD+ AYADEGDEVVERVLGWIM+LFPGGP++RRTSKLL
Sbjct: 388 QSMANEVIQARQPDSRIMHDNAAYADEGDEVVERVLGWIMRLFPGGPAKRRTSKLL 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	776
TAIR|locus:2076071	714	BLI "BLISTER" [Arabidopsis tha	0.743	0.808	0.437	1.8e-112
DICTYBASE|DDB_G0271670	374	DDB_G0271670 [Dictyostelium di	0.416	0.863	0.172	6.4e-06
POMBASE|SPBC215.13	534	SPBC215.13 "sequence orphan" [	0.463	0.674	0.194	0.00015
UNIPROTKB|O18515	534	O18515 "Nucleoporin p62" [Hydr	0.260	0.378	0.221	0.00044
CGD|CAL0006203	768	orf19.4906 [Candida albicans (	0.311	0.315	0.247	0.00091
UNIPROTKB|Q5APQ2	768	CaO19.4906 "Putative uncharact	0.311	0.315	0.247	0.00091
UNIPROTKB|I3LRD3	2501	CENPE "Uncharacterized protein	0.349	0.108	0.224	0.00094

TAIR|locus:2076071 BLI "BLISTER" [Arabidopsis thaliana (taxid:3702)]

 Score = 1088 (388.1 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
 Identities = 266/608 (43%), Positives = 359/608 (59%)

Query:   180 VNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEV 239
             VN+ P     + I  Q+S S    S      +L +G S     +G  H +  T      +
Sbjct:   127 VNTRPEVVPYSNIDKQSSESFDRASTLRETASLFSGTSMQM--DGFIHGSGLTSSRKDSL 184

Query:   240 GLNTPSTTNFSDPVSFNTGEG--------KPSNSASGLASLQSTPFKRSEYSGYNFDAGN 291
                T    +F +      G G        KP+ S+S L +   T  + SE S ++ +  +
Sbjct:   185 QPTTRMAGSFDEVAKNQQGSGELGGSIVQKPTLSSSYLFNSPDTSSRPSEPSDFSVNITS 244

Query:   292 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 351
             S    P++SA ++ T+ +SR SFLDSLN+ RA   T ++   PE                
Sbjct:   245 SS---PLNSAKSEATVKRSRPSFLDSLNISRAPE-TQYQH--PEIQADLVTSSGSQLSGS 298

Query:   352 XXXPAQNPSMEKETTGAFSKTT-TSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSIENQ 410
                     S  +++ G  S T+  S+ P+ F+   +     ++ G +   G  + S+  Q
Sbjct:   299 DGFGPSYISGRRDSNGPSSLTSGASDYPNPFEKFRSSLYPAAN-GVMP--GFTDFSMPKQ 355

Query:   411 HGFYSTKHNEDFAALEQHIEDLTQEKFALQXXXXXXXXXXXXXXXXXXXXTDSYNQQRSV 470
                     N+DF ALEQHIEDLTQEKF+LQ                    TD+YNQQR +
Sbjct:   356 --------NDDFTALEQHIEDLTQEKFSLQRDLDASRALAESLASENSSMTDTYNQQRGL 407

Query:   471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530
             VNQLK +ME+L ++I+ Q+ ELES R EYAN +LECNAADER++ILASEVI LE+KALRL
Sbjct:   408 VNQLKDDMERLYQQIQAQMGELESVRVEYANAQLECNAADERSQILASEVISLEDKALRL 467

Query:   531 RSNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSG 590
             RSNELKLER+LE                   RQD QSTI+ALQEEKK++Q+ ++KAS  G
Sbjct:   468 RSNELKLERELEKAQTEMLSYKKKLQSLEKDRQDLQSTIKALQEEKKVLQTMVQKASSGG 527

Query:   591 KSIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 650
             KS D  K            E LAI+DTT ++SNQ+T D  +L   D+S + ++PE+ +L 
Sbjct:   528 KSTDLSKNSTSRKNVSTSTEGLAISDTTPESSNQET-DSTTLLESDSSNTAIIPETRQLT 586

Query:   651 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH 710
             LEG ++++P DQMR+IHNIN LI+ELA+EKEELVQALSSEL++S+ +++LN ELSRKLE 
Sbjct:   587 LEGFSLSVPADQMRVIHNINTLIAELAIEKEELVQALSSELSRSAHVQELNKELSRKLEA 646

Query:   711 QTQRLELLTAQNMANENIS--FRQPDSASTHDHTAYADEGDEVVERVLGWIMKLFPGGPS 768
             QTQRLEL+TAQ MA +N+S   +QPD+    + T  ADEGDEVVERVLGWIMK+FPGGPS
Sbjct:   647 QTQRLELVTAQKMAIDNVSPEKQQPDTHVVQERTPIADEGDEVVERVLGWIMKMFPGGPS 706

Query:   769 RRRTSKLL 776
             +RRTSKLL
Sbjct:   707 KRRTSKLL 714

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0009908 "flower development" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IGI

GO:0010091 "trichome branching" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0048826 "cotyledon morphogenesis" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

DICTYBASE|DDB_G0271670 DDB_G0271670 [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 56/325 (17%), Positives = 128/325 (39%)

Query:    56 KLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQETKDV 115
             +L + ++   + D  + S  F N L++SS+  + + S++  +S S+   + S+S  +   
Sbjct:    41 QLEKTNKMAEVGDLGVAS--FLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 98

Query:   116 NNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGNDSFPK 175
             ++     SS          S+   S    +                   S S  + S   
Sbjct:    99 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 158

Query:   176 VPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGS 235
               +  +S  S    +  S  +S S+   S  S++ +  +  S  SSS  ++  ++S+  S
Sbjct:   159 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 218

Query:   236 ASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNH 295
             +S    ++ S+++ S   S ++     S+S+S  +S  S+    S  S  +  + +S + 
Sbjct:   219 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 278

Query:   296 VPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXXXXXP 355
                SS+++  +   S +S   S +   +SS +    +                       
Sbjct:   279 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 338

Query:   356 AQNPSMEKETTGAFSKTTTSNIPSA 380
             + + S    ++ + S +++S+  S+
Sbjct:   339 SSSSSSSSSSSSSSSSSSSSSSSSS 363

GO:0005576 "extracellular region" evidence=IEA

POMBASE|SPBC215.13 SPBC215.13 "sequence orphan" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 72/370 (19%), Positives = 143/370 (38%)

Query:    54 ALKLAQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNS--QE 111
             +++++  S  +S SD  + S+ F +  +S+S+      S +  T  SA P + S+S    
Sbjct:   154 SVEVSISSSSLSSSDP-LTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSS 212

Query:   112 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEAXXXXXXXXXXXXGFQGIEESQSKGND 171
             +  V++     SS    L    +S    S+   +                   S S  + 
Sbjct:   213 SSVVSSSSSPSSSSSSTLTSSSLSTS--SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS 270

Query:   172 SFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTS 231
             S     +  +S P+    T IS  +S S+   S  S   +  +  S  SS+  ++ +++S
Sbjct:   271 SIISSSSSSSSSPTSTSST-ISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS 329

Query:   232 TGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGN 291
             +  S+S    ++  +++ S P S +      S+ +S  +S  ST    S  S     + +
Sbjct:   330 SSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS--SSFSSTVSSSSSTSSSTLTSSS 387

Query:   292 SFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERXXXXXXXXXXXXXXX 351
             S +  P SS+++  +L   ++S     +    SS      T                   
Sbjct:   388 SSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447

Query:   352 XXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPT-VSTSDRGDIRRLGSNESSIENQ 410
                 A + S+   ++  + ++T   +       G+ T  S S +  I  +   +SS  + 
Sbjct:   448 PILTASSSSLLTSSSHTYERSTVYVVTVETVSSGSSTYASQSTQTSILLVIVGDSSSTDS 507

Query:   411 HGFYSTKHNE 420
              G  ST H++
Sbjct:   508 SGASST-HSK 516

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=NAS

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|O18515 O18515 "Nucleoporin p62" [Hydra vulgaris (taxid:6087)]

 Score = 106 (42.4 bits), Expect = 0.00044, Sum P(3) = 0.00044
 Identities = 49/221 (22%), Positives = 91/221 (41%)

Query:   185 SHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFHSSSEGTAHLTTSTGGSASEVGLNTP 244
             ++ F TK +     +    + P+ + +LG+G +   S    A  +++  G  S  G +  
Sbjct:     2 AYSFGTKPTTSTGFNFSTSATPAVSFSLGSGSTQPFSFTTPASQSSTASGGFSFGGPSVQ 61

Query:   245 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSAT-- 302
             ++T+ +    F+ GE KP+ + S L +  S   K+  +SG++F+   +    P S+ T  
Sbjct:    62 TSTSLT---GFSFGESKPAAANSSLGNQPSDASKQPVFSGFSFNTSTA-TIKPTSNITFG 117

Query:   303 NKFTLGKSRASFLDSLNVPRASSGTLFE--QTEPERXXXXXXXXXXXXXXXXXXPAQNPS 360
             +  +   S  +   +  +P +S+G       T+                     PA N  
Sbjct:   118 SNLSANSSFTAISTNAGIPASSAGGFSAPGSTKFSLSTPNSGFSLPALSTGVSLPASNVG 177

Query:   361 --MEKETTG-------AFSKTTTSNIPSAFDYLGNPTVSTS 392
               +   TTG        FS  ++S  P  F++ G P  STS
Sbjct:   178 FGLPASTTGFSLPASTGFSAGSSSQ-PGGFNF-GTPASSTS 216

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

CGD|CAL0006203 orf19.4906 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   160 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 218
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   219 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 277
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   278 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 337
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   338 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 397
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   398 RRLGSNESSIENQHGFYST 416
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

UNIPROTKB|Q5APQ2 CaO19.4906 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 64/259 (24%), Positives = 105/259 (40%)

Query:   160 QGIEESQ-SKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSF 218
             Q  ++SQ S+   S  + P+   S  +  FV+      SVS    S  S +       S 
Sbjct:   134 QQSQQSQPSQSPTSTSQAPSSTMSDNNTSFVSPSDTSLSVSATTTSSSSTS------SSS 187

Query:   219 HSSSEGTAHLTTSTGGSASEVGL-NTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPF 277
              SS+  T+ +TTS+  S+S     ++ S+T FS   +  T     S+S++  +S+ ST  
Sbjct:   188 SSSTPSTSDVTTSSSASSSPSSTTSSSSSTAFSSSTT-ETSSSATSSSSTTSSSISSTQS 246

Query:   278 KRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERX 337
               S  S  +F +  + +    SS ++ F+   S +S   S ++   SS   F  T     
Sbjct:   247 NTSSSSNTSFSSSTTASSSFSSSTSSSFS--PSPSSTTSSSSISSTSSS--F--TTSSDT 300

Query:   338 XXXXXXXXXXXXXXXXXPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDI 397
                               + N S    ++   S +TTS+IPS+ +     T ++S   D 
Sbjct:   301 SASSSSSSSVSPSSTTSSSSNFSSSSSSSTITSSSTTSSIPSSSEVSSTSTSASSSSSDS 360

Query:   398 RRLGSNESSIENQHGFYST 416
                 S  SS E      ST
Sbjct:   361 ST--STSSSSETDQSSSST 377

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3LRD3 CENPE "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 0.00094, P = 0.00094
 Identities = 65/289 (22%), Positives = 122/289 (42%)

Query:   472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531
             ++L  ++++  EEIK    E +  +     +++EC+   E  +   ++ I  EE+ L++ 
Sbjct:  1340 HRLTEKLQESHEEIKTITKERDDLKVTKEALQIECDQLKEEIRETLAKHIETEEE-LKVV 1398

Query:   532 SNELKLERQLENXXXXXXXXXXXXXXXXXXRQDFQSTIEALQEEKKMMQSKLRKASGSGK 591
                LK E++ E                   +Q+ + T + LQ++ + ++ K  +   S K
Sbjct:  1399 RGHLK-EKE-ETISKLTVDLSEKATELSSIQQELEMTNDELQKKTQELREKQEQLI-SIK 1455

Query:   592 SIDFGKXXXXXXXXXXXXEDLAITDTTLDNSNQDTHDDAS-LPRIDASGSTLLPESGRLA 650
              I   +            E L   D +L  +  +    A  L        T++ E   L 
Sbjct:  1456 EIS--ETQGKMSELEELKEHLKAKDASLQRTESERLSLAEKLQTSQEEVKTIIKERDELQ 1513

Query:   651 LEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSS-KLKDLNNELSRKLE 709
                 A+    DQ+R   NI  L++E+   +EE  Q    +++++  KL+++ N L ++LE
Sbjct:  1514 RAQEALQKERDQLR--ENIXELVAEIQELQEEEHQLKMKDVSETQEKLREIEN-LKKQLE 1570

Query:   710 HQTQRLELLTAQNMANENISFRQPDSASTHDHTAYADEGDEV--VERVL 756
              Q   LE     N   ENI   Q    +  + T+   E D++  VE  L
Sbjct:  1571 AQKSTLE-----NTEMENIRLTQRLHENLEEITSVTKERDDLRSVEETL 1614


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.124   0.334    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      776       696   0.00081  121 3  11 23  0.37    35
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  603 (64 KB)
  Total size of DFA:  301 KB (2155 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  70.80u 0.15s 70.95t   Elapsed:  00:00:04
  Total cpu time:  70.81u 0.15s 70.96t   Elapsed:  00:00:04
  Start:  Fri May 10 22:17:47 2013   End:  Fri May 10 22:17:51 2013

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0043515 "kinetochore binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000778 "condensed nuclear chromosome kinetochore" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_302959.1 annotation not avaliable (728 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	776
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-08
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-06
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	9e-06
PRK11281	1113	PRK11281, PRK11281, hypothetical protein; Provisio	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-05
COG2433	652	COG2433, COG2433, Uncharacterized conserved protei	2e-05
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	2e-05
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
PRK04863	1486	PRK04863, mukB, cell division protein MukB; Provis	7e-05
pfam04156	186	pfam04156, IncA, IncA protein	9e-05
COG3096	1480	COG3096, MukB, Uncharacterized protein involved in	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam00769	244	pfam00769, ERM, Ezrin/radixin/moesin family	3e-04
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-04
pfam13166	713	pfam13166, AAA_13, AAA domain	8e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.002
pfam13863	126	pfam13863, DUF4200, Domain of unknown function (DU	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.002
PRK10929	1109	PRK10929, PRK10929, putative mechanosensitive chan	0.002
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	0.003
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.003
pfam03962	188	pfam03962, Mnd1, Mnd1 family	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.7 bits (163), Expect = 3e-11
 Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 3/196 (1%)

Query: 394 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQ---HIEDLTQEKFALQRSLEASRALS 450
              +  L      +E Q      +       LEQ    +E+L +E   L+  LE  +   
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760

Query: 451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 510
           E L  E  SL ++  + +  + +L+ + + LQEE++    ELE        +  E  + +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLE 820

Query: 511 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570
           +R + L  E+  LEE+   L     +LE +LE  + E+   K+++  LE E+++ +  ++
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880

Query: 571 ALQEEKKMMQSKLRKA 586
            L+EEK+ ++ +LR+ 
Sbjct: 881 ELEEEKEELEEELREL 896

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 2e-10
 Identities = 45/166 (27%), Positives = 81/166 (48%)

Query: 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
                 LE+ ++ L  E  +L+  LE  R   E L  +   L          + QL+S +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 479 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538
           E+L+EE++    ELE  +     +  E  + +E    L  E+  LEEK   L+    +LE
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELE 799

Query: 539 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584
            +LE ++  + + ++++ SLE+ R+  +  IE L+EE + ++ KL 
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLD 845

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 63.9 bits (156), Expect = 2e-10
 Identities = 67/344 (19%), Positives = 136/344 (39%), Gaps = 34/344 (9%)

Query: 394  RGDIRRLGSNESSIENQHGFYSTKH---NEDFAALEQHIEDLTQEKFALQRSLEASRALS 450
               I  L    + +E        +     E+   L + +E+L+++  AL++ L    A  
Sbjct: 683  EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742

Query: 451  ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD 510
            E L    + L+    +  + + +L+  +E+ +EE+     E+E    +   ++ E  A  
Sbjct: 743  EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802

Query: 511  ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 570
            E    L +E+  L E+A  LR     LER++  ++  +   +++I  L ++ +   + IE
Sbjct: 803  EALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862

Query: 571  ALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-D 629
             L+E  + ++S+L        S++                +L      L        +  
Sbjct: 863  ELEELIEELESELEALLNERASLEEALALLR--------SELEELSEELRELESKRSELR 914

Query: 630  ASLPRIDASGSTLLPESGRLALEGLAVNIPH--DQMRMIHNINALISELALEKEELVQAL 687
              L  +    + L      L LEGL V I +  +++   +++     E A   E  ++  
Sbjct: 915  RELEELREKLAQL-----ELRLEGLEVRIDNLQERLSEEYSLTL---EEAEALENKIEDD 966

Query: 688  SSELAQSSKLKDLNNELSR----------KLEHQTQRLELLTAQ 721
              E  +  +LK L N++            + E   +R + LTAQ
Sbjct: 967  EEEARR--RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 63.6 bits (155), Expect = 3e-10
 Identities = 60/314 (19%), Positives = 124/314 (39%), Gaps = 12/314 (3%)

Query: 425 LEQHIEDLTQEKFALQRSLEASRALSE----SLAAENSSLTDSYNQQRSVVNQLKSEMEK 480
           LE+ +E L ++    +R  E    L E     L A+   L     +    +++L+ E+E+
Sbjct: 198 LEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEE 257

Query: 481 LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 540
           LQEE++    E+E  ++E   +R E     E    L  E+  LE +   LR    +LE +
Sbjct: 258 LQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317

Query: 541 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAA 600
           LE  +  +   K+KI +L++E ++ ++ +E L++    ++    +     + +       
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE---EKLSALLEEL 374

Query: 601 STVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPH 660
             +  +   E   +     +  N+       +  ++     L      L  E   +    
Sbjct: 375 EELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAEL 434

Query: 661 DQMRM-IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEH-QTQRLELL 718
           ++++  +  +N  + EL  + EEL   L        +L +L  EL R  +   +    L 
Sbjct: 435 EELQTELEELNEELEELEEQLEELRDRLK---ELERELAELQEELQRLEKELSSLEARLD 491

Query: 719 TAQNMANENISFRQ 732
             +     +   R 
Sbjct: 492 RLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.8 bits (153), Expect = 5e-10
 Identities = 42/167 (25%), Positives = 83/167 (49%)

Query: 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481
             +LE  +E+L ++   L+R LE  +    +L  E   L     +    + +L+ E+E+L
Sbjct: 697 LRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEEL 756

Query: 482 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 541
           QE ++    ELES     A ++ E    +E+ + L  E+  LEE+          LER+L
Sbjct: 757 QERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALEREL 816

Query: 542 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 588
           E+ +      +++I  LE+E ++ +  ++ L+EE + ++ +L +   
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 62.0 bits (151), Expect = 1e-09
 Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
              E  A L++ IE+L +++ ALQ  LE      E       +L            +L+ 
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           E+E+L+EEI+    ELE           + +  +E  + L  E+  L+E+   L + + +
Sbjct: 829 EIEELEEEIE----ELEE----------KLDELEEELEELEKELEELKEELEELEAEKEE 874

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
           LE +L+  + E    ++++  LE E  + +  IE L+E  + +++KL +
Sbjct: 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 61.6 bits (150), Expect = 1e-09
 Identities = 56/301 (18%), Positives = 111/301 (36%), Gaps = 43/301 (14%)

Query: 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 477
             E+   L++ +++  +E   L   L+      E L  E S L +   + +  +  L +E
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL 537
           + +L+++ ++    L +   +     LE    +  +K        L+E A  L   E KL
Sbjct: 297 ISRLEQQKQILRERLANLERQLE--ELEAQLEELESK--------LDELAEELAELEEKL 346

Query: 538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGK 597
           E   E  +S     + ++  LE E ++ +S +E L+E+ + ++SK+ +      S+    
Sbjct: 347 EELKEELESL----EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASL---- 398

Query: 598 TAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVN 657
                       E L                +    R+      LL +     L+ L   
Sbjct: 399 -NNEIERLEARLERL----------------EDRRERLQQEIEELLKKLEEAELKELQAE 441

Query: 658 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL 717
           +          +   + EL  E E L +AL     +  + +   +   R+L     RL+ 
Sbjct: 442 LE--------ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493

Query: 718 L 718
           L
Sbjct: 494 L 494

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.9 bits (148), Expect = 2e-09
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 18/189 (9%)

Query: 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN-------QQR 468
           ++  E+   L++ +E+  +E   L+  LE  R   E L  E   L +            R
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308

Query: 469 SVVNQLKSEMEKLQEEIKVQLVELESFRN----------EYANVRLECNAADERAKILAS 518
             + +L++E+E+L+E ++    ++E+ +           E   +  E   A E  +   S
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368

Query: 519 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577
            ++  LEE    LR    +LE +L   ++E+   K++I SLE+  +     +E L+EE K
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428

Query: 578 MMQSKLRKA 586
            ++++L + 
Sbjct: 429 ELEAELEEL 437

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 37/161 (22%), Positives = 75/161 (46%), Gaps = 7/161 (4%)

Query: 440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 499
           +RS  A +   + L  E + L     +    +  LK+E+  L++ ++    +LE    + 
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718

Query: 500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 559
             ++ E  A +E  + L S +  LEE+   L     +L+ +LE  + E+ S ++ ++ L+
Sbjct: 719 EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLK 778

Query: 560 KE-------RQDFQSTIEALQEEKKMMQSKLRKASGSGKSI 593
           +E       RQ  Q  +E L+EE +  + +L       +S+
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESL 819

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.2 bits (141), Expect = 1e-08
 Identities = 39/193 (20%), Positives = 83/193 (43%)

Query: 396 DIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA 455
           +I  L    S +  +      +  E    LE+  E +   K  L+        L + LA 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515
              +  +   +  +++ +L+   E L+EE+     EL   RNE   ++ E  + +ER + 
Sbjct: 356 LEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLER 415

Query: 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575
           L+  +  L+E+   L +   +L+ +LE    E+   ++++  L    ++ +  +  LQEE
Sbjct: 416 LSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEE 475

Query: 576 KKMMQSKLRKASG 588
            + ++ +L     
Sbjct: 476 LQRLEKELSSLEA 488

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 57.8 bits (140), Expect = 2e-08
 Identities = 37/165 (22%), Positives = 74/165 (44%)

Query: 423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 482
           A LE  I+ L  E   L+R +E  R   + L  E + L +     R+ + ++  E  + +
Sbjct: 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR 384

Query: 483 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 542
           +E+K    +LE  + E   ++ E +   E  + L+ E+  L      + +   +LE + E
Sbjct: 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

Query: 543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
           +   EI   + K+  L  +   ++  +  L+EE   ++ +L K  
Sbjct: 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 479
           ED ++LEQ IE++  E   L+  +E        L    + L    +  R  + ++++E+ 
Sbjct: 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR--IPEIQAELS 801

Query: 480 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539
           KL+EE+      L     +   + LE    ++  + L  + I L+E+   +      L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
           + E  + E+   +  +  LE    D +   + L+ + + ++ K+ +  
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 56.6 bits (137), Expect = 4e-08
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 21/182 (11%)

Query: 421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEME 479
             A+LE+ +E LT+E   L++ LE    L E L  +   L  +   + +  + +L++E+ 
Sbjct: 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA 304

Query: 480 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--NELK- 536
            L+  I  +  ELE      A +  E +      + L  E   +EE+  R      E   
Sbjct: 305 SLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE---IEEERKRRDKLTEEYAE 361

Query: 537 LERQLENSQSEI--------------SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582
           L+ +LE+ ++E+                Y++K+  L++E  + +  ++ LQEE + +  +
Sbjct: 362 LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

Query: 583 LR 584
           L 
Sbjct: 422 LA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 55.5 bits (134), Expect = 9e-08
 Identities = 60/319 (18%), Positives = 112/319 (35%), Gaps = 24/319 (7%)

Query: 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL- 474
               E  A LE+  E L + K  L           +    E   L     +    + +L 
Sbjct: 235 EALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLE 294

Query: 475 -----KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 529
                  E+E+  E ++  L ELE    +  ++       +E+ + L SE   LEE A  
Sbjct: 295 ELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE---LEELAEE 351

Query: 530 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 589
                  LE +L+  +  +   +K++    +  +  +  I+ L+EE   + + L +    
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEI--- 408

Query: 590 GKSIDFGKTAASTVNASTS--TEDLAITDTTLDNSNQDTHDDASLPRIDAS----GSTLL 643
            + ++  +     +        E++   +  ++         A L          G  L 
Sbjct: 409 QEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELP 468

Query: 644 PESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKL----KD 699
            E  +  LE   + +   +  +  +     +EL  E EEL + L     +  +L    + 
Sbjct: 469 EEHEKELLELYELELEELEEEL--SREKEEAELREEIEELEKELRELEEELIELLELEEA 526

Query: 700 LNNELSRKLEHQTQRLELL 718
           L  EL  KLE     LE L
Sbjct: 527 LKEELEEKLEKLENLLEEL 545

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 55.1 bits (133), Expect = 1e-07
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 420 EDFAALEQHIED-------LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN 472
            +   LE+ IE+       LT+E   L+  LE  RA  E +  E +   D     R  + 
Sbjct: 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

Query: 473 QLKSEME-------KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 525
           +LK E+        +LQEE++    EL       A +  + N  +E  +  A E+   E 
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455

Query: 526 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575
           K  +L ++  K E++L + + E    +K++S L++E  + ++   A +E 
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 27/216 (12%)

Query: 394  RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESL 453
              ++        ++E +      +       LEQ IE+L +E   L+  L+      E L
Sbjct: 799  EEELEEAERRLDALERELESLEQRRER----LEQEIEELEEEIEELEEKLDELEEELEEL 854

Query: 454  AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELESFRNEY----ANVRLEC 506
              E   L +   +  +   +L+ E+++L+EE +    +L ELES   E       +R   
Sbjct: 855  EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914

Query: 507  NAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSY------------- 551
               + + + L  E+  LEE+      + L  +LER++E  + EI +              
Sbjct: 915  EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974

Query: 552  -KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
             +++   L+ +R+D +   E L E  + +  + R+ 
Sbjct: 975  VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRER 1010

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 11/173 (6%)

Query: 416 TKHNEDFAALEQHIEDLTQEKFALQRSL----EASRALSESLAAENSSLTDSYNQQRSVV 471
            +       LEQ + +L + K  L+  L    E    L E+L  E + L     + R+ +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL 399

Query: 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531
            +LK E+E L+E ++     LE  + E   +  E        + L  E+  LEE+   LR
Sbjct: 400 EELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459

Query: 532 SNELKLER-------QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577
               +LER       +L+  + E+SS + ++  LE E++  Q     L+  + 
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 44/201 (21%), Positives = 87/201 (43%), Gaps = 22/201 (10%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           K  E++  L++ +  L  E  +L++ LE    L + LA     L +   +   ++ +L+ 
Sbjct: 522 KKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEE 581

Query: 477 EMEKLQEEIKVQLVELESFRNEY---ANVRLECNAADERAKILASEV------IGLEEKA 527
              +  EE++ +L ELE F NEY    +   E    ++  K L  E+      +   EK 
Sbjct: 582 LGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKR 641

Query: 528 LRLRSNEL-------------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574
           L     EL             +L  +      E++  + ++  LEK R++ + T+E L+E
Sbjct: 642 LEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701

Query: 575 EKKMMQSKLRKASGSGKSIDF 595
           E +  +   ++     K+++ 
Sbjct: 702 ELEEREKAKKELEKLEKALER 722

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 27/159 (16%), Positives = 63/159 (39%)

Query: 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485
            + IE+L ++   L+  +         L  E   L +   Q R  + +L  ++  L++++
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 486 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545
                E+E      A +  E    +   + L   +   EE+     +   +LE Q+E  +
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795

Query: 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584
            E+ + ++ +  L  E          L+E  + ++ ++ 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 82/435 (18%), Positives = 153/435 (35%), Gaps = 62/435 (14%)

Query: 160 QGIEESQSKGNDSFPKVPTLVNSGPSHDFVTKISPQNSVSTLFQSKPSNAIALGNGHSFH 219
           +   E+ SKG  S  ++  + NSG +H      S  +    L  S+        + H  H
Sbjct: 214 KEKSEASSKGLTSTKELVPVQNSGGNHS--LSKSSNSQTPELEYSEKGKDHHHSHNHQHH 271

Query: 220 SSSEGTAHLTTSTGGSASEVGLNTPSTTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKR 279
           S      H   +       + +   + +N S P S +T   K + S S  A+  S   K 
Sbjct: 272 SIGINNHHSKHADSKL-QTIEVIE-NHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKS 329

Query: 280 SEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRASSGTLFEQTEPERDSF 339
           S+                 S+  +      S      S N    SS     +++ +R S 
Sbjct: 330 SK-----------------SAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 340 MSSSSLNSMDVLGSSPAQNPSMEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRR 399
            SS + +S        A             S       PSA + L           DI++
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKIST------PSAIERL---------EQDIKK 417

Query: 400 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSS 459
           L +                 ++ + L   I  LT  + +L+  L   +  ++ L  + +S
Sbjct: 418 LQAELQQ-----------ARQNESELRNQISLLTSLERSLKSDLGQLKKENDMLQTKLNS 466

Query: 460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 519
           +  +  + +  +  ++   ++L+ E   + V  E    E    + E      RA   A+ 
Sbjct: 467 MVSAKQKDKQSMQSME---KRLKSEADSR-VNAEKQLAEEKKRKKEEEETAARAAAQAAA 522

Query: 520 VIGLEEKALRLRSNEL-----KLERQLENSQSEISSYKKKISSL------EKERQDFQST 568
                 ++L+    +L     KLE  L+  + E    +K+   L      EKE +   S 
Sbjct: 523 SREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKETEVLMSA 582

Query: 569 IEALQEEKKMMQSKL 583
           ++A+Q++  M+++ L
Sbjct: 583 LQAMQDKNLMLENSL 597

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 50.1 bits (120), Expect = 5e-06
 Identities = 40/197 (20%), Positives = 89/197 (45%), Gaps = 29/197 (14%)

Query: 419 NEDFAALEQHIEDLTQ-EKFALQR---SLEASRALSE-SLAAENSSLTDSYNQQR---SV 470
            +    L + I+DL + E+  ++     LEA  A  E S+A +   L D+  +     + 
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAE 330

Query: 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530
           +++L +E+E+L+ EI+ +    +    EYA ++      +E   +  +E+  ++++    
Sbjct: 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELK------EELEDLR-AELEEVDKEFAET 383

Query: 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEK 576
           R        +LE  + EI+  K+++  L++E Q                ++ I  L+EEK
Sbjct: 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443

Query: 577 KMMQSKLRKASGSGKSI 593
           +    +++K     + +
Sbjct: 444 EDKALEIKKQEWKLEQL 460

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 8e-06
 Identities = 44/253 (17%), Positives = 104/253 (41%), Gaps = 11/253 (4%)

Query: 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532
           +L+ ++E+L+E+I      L   R E   +  E     +  + L+ ++  L +   RL +
Sbjct: 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740

Query: 533 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 592
              +LE ++     E++  + +I  LE+  ++ +  +   + E + +++++ +     K+
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800

Query: 593 IDFGKTAASTVNASTSTEDLAITDTTLD-NSNQDTHDDASLPRIDASGSTLLPESGRLAL 651
           +   + A   + A  +  +    +      S +           D        E     +
Sbjct: 801 L---REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI---EELSEDI 854

Query: 652 EGLAVNIPH--DQMRMIHN-INALISELALEKEELVQALSSELAQSSKLKDLNNELSRKL 708
           E LA  I    + +  + + + AL++E A  +E L    S     S +L++L ++   +L
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR-SEL 913

Query: 709 EHQTQRLELLTAQ 721
             + + L    AQ
Sbjct: 914 RRELEELREKLAQ 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 13/143 (9%)

Query: 443 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 502
           L++  A+ + L  E   L     + R  + + K+E+E L + ++   +ELE   N+ +  
Sbjct: 6   LKSLLAIQK-LDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS-- 62

Query: 503 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 562
           +LE    + R +I          K    + + +K ER+L     EI   K++I+SLE E 
Sbjct: 63  QLESEIQEIRERI----------KRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112

Query: 563 QDFQSTIEALQEEKKMMQSKLRK 585
            +    IE L++E + ++ +L +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLER 135

Length = 239

>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 60/311 (19%)

Query: 430 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 489
           + L  E   +Q+ LE + AL + +  +         QQ   + Q  +++ + Q E++   
Sbjct: 52  KLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQ-LKQQ---LAQAPAKLRQAQAELE--- 104

Query: 490 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER---QLENSQS 546
                         L+ +  +E  + L++         L LR  E +L +   QL+N+Q+
Sbjct: 105 -------------ALKDDNDEETRETLST---------LSLRQLESRLAQTLDQLQNAQN 142

Query: 547 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNAS 606
           +++ Y  ++ SL+ + +  Q+ + A    +++ Q +     G        K     +  S
Sbjct: 143 DLAEYNSQLVSLQTQPERAQAALYANS--QRLQQIRNLLKGG--------KVGGKALRPS 192

Query: 607 TSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMI 666
                L      L+  N        L R    G+T L +  +   + L   I   +   +
Sbjct: 193 QRVL-LQAEQALLNAQN-------DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE-HQL 243

Query: 667 HNINALISE--LALEKEELVQALSSELAQSSKLKDL-------NNELSRKLEHQTQRLEL 717
             +   I+   L L ++ + +A S + A   +   L       N +LS++L   T++L  
Sbjct: 244 QLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303

Query: 718 LTAQNMANENI 728
           LT QN+  +N 
Sbjct: 304 LTQQNLRVKNW 314

Length = 1113

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
              E+   LE+ +E+  +   AL+R LE+     E L  E   L +   +       L+ 
Sbjct: 790 ALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE-------LEE 842

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           ++++L+EE+       E    E   ++ E    +   + L  E+  LEE+   L     +
Sbjct: 843 KLDELEEEL-------EELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577
           LE +L   + EI   ++++  LE + +  +  +  L+EE +
Sbjct: 896 LESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELE 936

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 2e-05
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 3/191 (1%)

Query: 397 IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 456
           I+ LG  E  +  +      +   + A+LE+ I +  +E    +  L    A  + L AE
Sbjct: 281 IKDLGEEEQ-LRVKEKIGELE--AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 516
              L     ++R   ++L  E  +L+EE++    ELE    E+A  R E     E+ + L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 517 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 576
             E+  L+ +  RL+    +L  +L +  + I+  + KI+ LE+E++D    I+  + + 
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457

Query: 577 KMMQSKLRKAS 587
           + + + L K  
Sbjct: 458 EQLAADLSKYE 468

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 485
           E   E+  +E    ++ ++      E L  ENS L     + +  + +L+SE+E+ + E+
Sbjct: 407 EGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466

Query: 486 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 545
           + ++ +             E  A D R + L  E   LEEK  R+   E KL    +  +
Sbjct: 467 RDKVRK-----------DREIRARDRRIERLEKE---LEEKKKRVEELERKLAELRKMRK 512

Query: 546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK---LRKASGSGKSI 593
            E+S     +  +EK   +    IE  +EE  + +     +   SG G   
Sbjct: 513 LELSGKGTPVKVVEKLTLE---AIEEAEEEYGIKEGDVILVEDPSGGGART 560

Length = 652

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 25/112 (22%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 523
           + ++  ++ Q + E+EK +EE++  L++ + F  E    R     A+++A+         
Sbjct: 23  FERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKR---RRAEKKAEE-------- 71

Query: 524 EEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574
           E+K  + +  E+K L+ +LE  ++EI   ++K+   +   +  +S +E   E
Sbjct: 72  EKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEEFLESVVERSPE 123

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 43/209 (20%)

Query: 390 STSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIED----LTQEKFALQRSLEA 445
           +T    D   L S    +E +            A  +  IE     L+ E  A+   ++ 
Sbjct: 76  ATDVEADAAELESQVLRLEAEVARLRA-----EADSQAAIEFPDDLLSAEDPAVPELIKG 130

Query: 446 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 505
            ++L     +  S+L       R+ +  + +++++L+ E+     +L++ R         
Sbjct: 131 QQSL---FESRKSTL-------RAQLELILAQIKQLEAELAGLQAQLQALR--------- 171

Query: 506 CNAADERAKILASEVIG---LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE- 561
                ++ ++++ E+     L+EK L  R   L+LER+   +Q E+   + ++  L+++ 
Sbjct: 172 -----QQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQI 226

Query: 562 ---RQDFQSTIEALQEEKKMMQSKLRKAS 587
              + + Q   +  +EE   +  +L +A 
Sbjct: 227 DELQLERQQIEQTFREE---VLEELTEAQ 252

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 6e-05
 Identities = 30/169 (17%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           K  E+ + +E  + ++ Q+   L    E      + L  +   L +        +  L  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNG 861

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           + E+L+EE++     L    +   +++ E +  + + + L  ++  LE +  + R    +
Sbjct: 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE 921

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
           L+ +LE  + E+S  +      E+  ++  S +E +Q E + ++ ++R 
Sbjct: 922 LKAKLEALEEELSEIEDPKGEDEEIPEEELS-LEDVQAELQRVEEEIRA 969

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional

 Score = 46.1 bits (110), Expect = 7e-05
 Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 24/171 (14%)

Query: 420  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 475
            +D+   +Q   D  Q+ FAL    QR    S   +  + A+NS L +   Q+      L+
Sbjct: 942  QDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQR------LE 995

Query: 476  SEMEKLQEEIKVQLVELESFRNEYANVRL----ECNAADERAKILASEV--IGL-----E 524
             + E+ +   + QL + ++   +Y  V        +A  +  + L  E+  +G+      
Sbjct: 996  -QAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGA 1054

Query: 525  EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 575
            E+  R R +EL    +L  ++S  +  +K+++  E E  +    +  L+ +
Sbjct: 1055 EERARARRDEL--HARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERD 1103

Length = 1486

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 7/132 (5%)

Query: 439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 498
           L           + L      L++   Q    +++L+ E+E L+E I     ELE  + +
Sbjct: 60  LLLKAPVQSVRPQKLEELQGELSELKQQ----LSELQEELEDLEERIAELESELEDLKED 115

Query: 499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 558
              +R    + +ER + L   +  L ++   LR     L  ++E  + E+   ++ +  L
Sbjct: 116 LQLLRELLKSLEERLESLEESIKELAKELRELRQ---DLREEVEELREELERLQENLQRL 172

Query: 559 EKERQDFQSTIE 570
           ++  Q+ QS +E
Sbjct: 173 QEAIQELQSLLE 184

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 9e-05
 Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 18/182 (9%)

Query: 420  EDFAALEQHIEDLTQEKFAL----QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 475
            ED+A  +Q      Q+ FAL    QR    S + S  + +ENS L +   + R  + Q +
Sbjct: 941  EDYAQAQQMQRQARQQAFALTEVVQRRAHFSYSDSAEMLSENSDLNE---KLRQRLEQAE 997

Query: 476  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI--------GLEEKA 527
            +E  + +E+++    +L  +    A+++   +   E    L  E+         G EE+A
Sbjct: 998  AERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERA 1057

Query: 528  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
             R+R +EL    QL  ++S  +  +K+++  E E  +    +  L+ +   M+ ++  A 
Sbjct: 1058 -RIRRDEL--HAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTAK 1114

Query: 588  GS 589
              
Sbjct: 1115 AG 1116

Length = 1480

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.4 bits (108), Expect = 1e-04
 Identities = 64/318 (20%), Positives = 127/318 (39%), Gaps = 42/318 (13%)

Query: 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 532
              +E+++L+E ++    EL S ++E   +    +   +     + ++  +E++  +L  
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 533 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR--KASGSG 590
            E KL+ +LE  + ++SS +++I +++ E ++ ++ IE L+E+   ++  L   +A  S 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 591 KSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLA 650
             I   +   S +    S  +  + +            +  L R      TL  E     
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREI-----------EQKLNR-----LTLEKEYLEKE 834

Query: 651 LEGLAVNIPHDQMRM------IHNINALISELALEKEEL---VQALSSEL---------- 691
           ++ L       + ++      I N+N    EL  E EEL   ++ L S L          
Sbjct: 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894

Query: 692 -AQSSKLKDLNNELSRKLEHQTQRLELLTA--QNMANENISFRQPDSASTHDHTAYADEG 748
            AQ  +L+    EL  ++E + +RL  L A  + +  E      P               
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954

Query: 749 D--EVVERVLGWIMKLFP 764
           D    ++RV   I  L P
Sbjct: 955 DVQAELQRVEEEIRALEP 972

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 40/173 (23%), Positives = 76/173 (43%), Gaps = 12/173 (6%)

Query: 415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 474
           S     +   L + +E L +E  +LQ  L       + L+ E S  +    +    + QL
Sbjct: 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQL 728

Query: 475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534
           + E EKL+E ++    +L S   E  NV+ E        K L + +  LEE   +L    
Sbjct: 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSE-------LKELEARIEELEEDLHKLEEAL 781

Query: 535 LKLER-----QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 582
             LE      ++   Q+E+S  ++++S +E   ++ +  +  L  EK+ ++ +
Sbjct: 782 NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 35/168 (20%), Positives = 74/168 (44%), Gaps = 13/168 (7%)

Query: 423  AALEQHIEDLTQEKFALQRSLE----ASRALSES---LAAENSSLTDSYNQQRSVVNQLK 475
             ++E+ IE+L  +K  L+  LE    A R L      L  E   L     +    + +L+
Sbjct: 850  KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909

Query: 476  SEMEKLQEEIKVQLVELESFRNEYANVR------LECNAADERAKILASEVIGLEEKALR 529
            +++EK ++ +     +LE+   E + +        E    +   + + +E+  +EE+   
Sbjct: 910  AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 530  LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 577
            L    +   ++ E     +   K+K + LE+ER+     IE  +++K+
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 39/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%)

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLE-----CNAADERAKILASEVIGLEEKALRLR 531
           E E+ Q+E++ ++ ++E      A   LE         +E+ K    E   LE+KA  L 
Sbjct: 2   EAEREQQELEERMEQMEE-DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELE 60

Query: 532 SNELKLERQLENS-------QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584
               +LE +   S       ++E+     +++ LE+ER+  ++    LQ+E +  Q    
Sbjct: 61  EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120

Query: 585 KASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRID 636
           +A           TA   V A  + E L   D   + S  D   D  +    
Sbjct: 121 RARQELLEAAAAPTAPPHVAAPVNGEQLEPDDNGEEAS-ADLETDPDMKDRS 171

This family of proteins contain a band 4.1 domain (pfam00373), at their amino terminus. This family represents the rest of these proteins. Length = 244

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 3e-04
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 21/187 (11%)

Query: 420 EDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSY---NQQRS 469
           E+   LE  IEDL +       E+  L   +   R   E L  E   L       +    
Sbjct: 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAE 310

Query: 470 VVNQLKSEMEK----LQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 525
            V   + E+E     L++ ++   V  ++   E  ++R + +  +ERA+        L E
Sbjct: 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE-------ELRE 363

Query: 526 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
           +A  L S   +    +E+ + EI   +++I  L +   D    +   ++  + ++ +  +
Sbjct: 364 EAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDE 423

Query: 586 ASGSGKS 592
                  
Sbjct: 424 LREREAE 430

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 35/188 (18%), Positives = 70/188 (37%), Gaps = 29/188 (15%)

Query: 418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 477
             +      + +ED  QE   L+  LE  R L          L +   + +  + +L+  
Sbjct: 553 QLQQLKEELRQLEDRLQE---LKELLEELRLLRTRKEELEE-LRERLKELKKKLKELEER 608

Query: 478 MEKLQE------------EIKVQLVELESFRNEY-ANVRLECNAADERAKI------LAS 518
           + +L+E            E++    ELES   +      LE        ++      L +
Sbjct: 609 LSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEA 668

Query: 519 EVIGLEEKALRL------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572
           E+    ++               +LE +LE  + E+    KK+  +E+  ++ +S    L
Sbjct: 669 EIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAEL 728

Query: 573 QEEKKMMQ 580
           +E KK ++
Sbjct: 729 EELKKELE 736

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 47/211 (22%), Positives = 83/211 (39%), Gaps = 38/211 (18%)

Query: 394 RGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSL---------E 444
           +G+I+ L   +  +E              A LE+ +++L +E   L + L         E
Sbjct: 538 KGEIKSL---KKELEKLEELKKKL-----AELEKKLDELEEELAELLKELEELGFESVEE 589

Query: 445 ASRALS--ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ-------------EEIKVQL 489
               L   E    E   L D+  +      +LK   E+L              EE++ +L
Sbjct: 590 LEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEL 649

Query: 490 VELESFRN--EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547
            ELE   +  EY  +R E          L +E+  LE++   ++    KL+ +LE    E
Sbjct: 650 EELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE----E 705

Query: 548 ISSYKKKISSLEKERQDFQSTIEALQEEKKM 578
               KK++  LEK  +  +   E +++ K +
Sbjct: 706 REKAKKELEKLEKALERVEELREKVKKYKAL 736

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 5e-04
 Identities = 48/251 (19%), Positives = 90/251 (35%), Gaps = 18/251 (7%)

Query: 496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 555
           R E   +  +    +E+   L   +  L ++   L     +L ++LE    +IS+ +K +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 556 SSLEKERQ-------DFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS 608
           + LE E +            +  L+ E + ++ +L +A       +              
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ-IEQL 794

Query: 609 TEDLAITDTTLDNSN---QDTHDDASLPRIDASGSTLLPESGRLALEGLA---VNIPHDQ 662
            E+L      LD         +++A+  R           +    LE L      +  D 
Sbjct: 795 KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854

Query: 663 MRMIHNINAL---ISELALEKEELVQALSSELAQSSKLKDLNNELSRKL-EHQTQRLELL 718
             +   I  L   I EL  E E L+   +S     + L+    ELS +L E +++R EL 
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914

Query: 719 TAQNMANENIS 729
                  E ++
Sbjct: 915 RELEELREKLA 925

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.8 bits (101), Expect = 7e-04
 Identities = 42/252 (16%), Positives = 100/252 (39%), Gaps = 41/252 (16%)

Query: 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 526
           Q+  + +L+ E+ +L+ +++    EL+S +NE  ++         + + L  ++  L+ +
Sbjct: 665 QKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRE 724

Query: 527 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
              L     +L+ +LE  + E+   ++++  L++  ++ +  +E+L+E    ++ ++ + 
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 587 SGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES 646
               +++                E+L   +  L+ + +          ++    +L    
Sbjct: 785 EEKRQAL---------------QEELEELEEELEEAERRLDA------LERELESLEQRR 823

Query: 647 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR 706
            RL  E                    I EL  E EEL + L     +  +L+    EL  
Sbjct: 824 ERLEQE--------------------IEELEEEIEELEEKLDELEEELEELEKELEELKE 863

Query: 707 KLEHQTQRLELL 718
           +LE      E L
Sbjct: 864 ELEELEAEKEEL 875

Length = 1163

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 42.7 bits (101), Expect = 8e-04
 Identities = 36/201 (17%), Positives = 86/201 (42%), Gaps = 27/201 (13%)

Query: 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
           +E++  L + +E+L  +    +  +E +    ES+       ++        V +LK+ +
Sbjct: 277 DEEYQELIEQLEELIDK---YESHIEKALEELESILDTEKENSEFKLD----VEELKALL 329

Query: 479 EKLQEEIKV-------------QLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 525
           E L+E ++                +ELES  +   ++    +A +E  +    ++  L++
Sbjct: 330 EALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKK 389

Query: 526 KALRLRSNELKLERQLENS-QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 584
           +  + +    KL   L    + +I +Y+K+   LEK     +  I+ L+ E K ++ +++
Sbjct: 390 EKNKAKK---KLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIK 446

Query: 585 KASGSGKSIDFGKTAASTVNA 605
           +      +I   +  A  +N 
Sbjct: 447 ELEKQLTNI---EPTADEINK 464

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 40/274 (14%)

Query: 471 VNQLKSEMEKLQEEI--------KVQLVELESFRNEYANVRLECNAADERAKILASEVIG 522
           V +   + EK  EE+        ++ L+ ++  R +   +R E   A ER + L  E   
Sbjct: 165 VAEFDRKKEKALEELEEVEENIERLDLI-IDEKRQQLERLRREREKA-ERYQALLKE--- 219

Query: 523 LEEKALRLRSNELK-LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581
             E        E + LERQ E  + +++S ++++  L +E  + +  +E +++  + +  
Sbjct: 220 KREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279

Query: 582 KLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD-DASLPRIDASGS 640
           K+ K  G  + +   +             ++A  + ++    ++  D +  L +++A   
Sbjct: 280 KI-KDLGEEEQLRVKEKIGEL------EAEIASLERSIAEKERELEDAEERLAKLEAEID 332

Query: 641 TLLPESGRLALEGLAVNIPHDQMRMIHNINALIS-------------ELALEKEELVQAL 687
            LL E     +E L   I  ++ R                       E+  E  E    L
Sbjct: 333 KLLAE-----IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL 387

Query: 688 SSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ 721
                +  KLK   NEL R+L+   + L+ L+ +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEELQRLSEE 421

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 50/201 (24%), Positives = 78/201 (38%), Gaps = 24/201 (11%)

Query: 402 SNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----N 457
           S E S E Q    ST   +D   L Q   +LT +   L+    A     E L A      
Sbjct: 604 SRELSPEQQLDILSTM--KDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQF 661

Query: 458 SSLTDSYNQQRSVVN------QLKSEMEKLQEEIKVQLVELES----FRNEYANVRLECN 507
             L+  +  QR  V       + +  +E   E  K    EL +     R E  ++  +C 
Sbjct: 662 IDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDL-FDCG 720

Query: 508 AADERAKILASEVIGLEEKALRLRSNELK-LERQLENSQS---EISSYKKKISSLEKERQ 563
            AD             EE+ L  R + L+ LE QLE   +   E+S+   +    E+E  
Sbjct: 721 TADTEDAFRE---AAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELA 777

Query: 564 DFQSTIEALQEEKKMMQSKLR 584
             +  I+AL EE + + +++ 
Sbjct: 778 LLEEAIDALDEEVEELHAQVA 798

Length = 984

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 41.2 bits (97), Expect = 0.002
 Identities = 37/191 (19%), Positives = 81/191 (42%), Gaps = 21/191 (10%)

Query: 397 IRRLGSNESSIENQHGFYSTKHNED-FAALEQHIEDLTQEKFALQRSLEASRALSESLAA 455
           + +      +IE        K  E     + + I +++ E   L+  LE      + L  
Sbjct: 181 LEKFIKRTENIEEL-----IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE 235

Query: 456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 515
               + +   +  S    L+    KL+E+I+    ELE    E   ++ E    +E+ K 
Sbjct: 236 LKEEIEELEKELES----LEGSKRKLEEKIR----ELEERIEE---LKKEIEELEEKVKE 284

Query: 516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE---KERQDFQSTIEAL 572
           L  E+    E+ ++L     +   +L   +  +S  +++I+ +E   KE ++ +  +E L
Sbjct: 285 L-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343

Query: 573 QEEKKMMQSKL 583
           +++ K ++ +L
Sbjct: 344 KKKLKELEKRL 354

Length = 880

>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200)

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 32/124 (25%)

Query: 473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR- 531
           + + EME++Q  +  +  E E                  R ++L      LE+K   L+ 
Sbjct: 4   EKRREMEEVQLALDAKREEFE-----------------RREELLKQREEELEKKEEELQE 46

Query: 532 ----------SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 581
                      NE K  R  + ++ E    KK     E+E ++ ++ +E L+ E + ++ 
Sbjct: 47  SLIKFDKFLKENEAKRRRAEKKAEEE----KKLRKEKEEEIKELKAELEELKAEIEKLEE 102

Query: 582 KLRK 585
           KL +
Sbjct: 103 KLEE 106

This family is found in eukaryotes. It is a coiled-coil domain of unknwon function. Length = 126

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 41.7 bits (99), Expect = 0.002
 Identities = 37/178 (20%), Positives = 57/178 (32%), Gaps = 34/178 (19%)

Query: 398 RRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 457
           +RLG  E+ IE           +    L + I  L      L+R LE             
Sbjct: 495 KRLGLPENIIEEAKKLIGEDKEK----LNELIASLE----ELERELE------------- 533

Query: 458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES-FRNEYANVRLECNAADERAKIL 516
                   Q+      L  E EKL+EE++ +  +L+            E   A + AK  
Sbjct: 534 --------QKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585

Query: 517 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 574
           A E+I    K LR          +            K     EK+++  +   E L+ 
Sbjct: 586 ADEII----KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639

Length = 782

>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 674 SELALEKEELVQALSSELAQS-SKLKDLNNELSRKLEHQTQRLELLTAQN--MANENISF 730
           +E ALE  EL+   S +L +S      +N ELS+ L  Q QR++L+ +Q    A++ +  
Sbjct: 239 AERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298

Query: 731 RQ 732
           RQ
Sbjct: 299 RQ 300

Length = 1109

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 475
              N+   ALE  +EDL  +   L+  ++  R   +    + S++ D           L 
Sbjct: 41  EALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL-----RALN 95

Query: 476 SEMEKLQEEIKVQLVELESFRNEYAN------------VRLECNAADERAKILASEVIGL 523
            E++  +E I     EL     E                RLE N A+  A++   EV  +
Sbjct: 96  IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL-EEEVAEI 154

Query: 524 EEKALRLRSNELKLERQLE 542
            E+   L S   +L+ +L+
Sbjct: 155 REEGQELSSKREELKEKLD 173

Length = 239

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 40/211 (18%), Positives = 67/211 (31%), Gaps = 23/211 (10%)

Query: 421 DFAALEQHIEDLTQEKFALQRSLEASRA-LSESLAA-----ENSSLT------DSYNQQR 468
           D   L + I DL     AL+      R  L+E LAA      N          D+    R
Sbjct: 88  DLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVR 147

Query: 469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 528
             +         L      ++  L++   + A VR E  A       L SE    + K  
Sbjct: 148 LAIY-----YGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA 202

Query: 529 RLRSNELKLERQLENS----QSEISSYKKKISSLEKE--RQDFQSTIEALQEEKKMMQSK 582
           +L     K   QL +     Q ++   +   S L+ E    +  +             + 
Sbjct: 203 QLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262

Query: 583 LRKASGSGKSIDFGKTAASTVNASTSTEDLA 613
             +A+ + ++ +  K  A      +ST    
Sbjct: 263 RARAAEAKRTGETYKPTAPEKMLISSTGGFG 293

Length = 420

>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 7/69 (10%)

Query: 526 KALRLRSNEL-KLERQLENSQSEISSYKKKISSLEKERQDFQST------IEALQEEKKM 578
           +AL      L KL+++LE  +  I+  + +I  L+K R++ +        ++ L++E K 
Sbjct: 62  QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121

Query: 579 MQSKLRKAS 587
           ++++L K  
Sbjct: 122 LKAELEKYE 130

This family of proteins includes MND1 from S. cerevisiae. The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair. Length = 188

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 57/336 (16%), Positives = 123/336 (36%), Gaps = 70/336 (20%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE----------NSSLTDSYNQ 466
           +  ++   LE+ +E+L +E   L+  +    +    +A               L + +  
Sbjct: 414 ELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEH-- 471

Query: 467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL------ASEV 520
           ++ ++   + E+E+L+EE+  +  E    R E   +  E    +E    L        E 
Sbjct: 472 EKELLELYELELEELEEELS-REKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 521 IGLEEKALRLRSNEL---KLERQLENSQSEISSYKKKISSLEKERQDF------QSTIEA 571
           +  + + L     EL   K + QL+  + E+   + ++  L++  ++       +  +E 
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590

Query: 572 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDAS 631
           L+E  K ++ KL++       +                E+L  +    +  N+       
Sbjct: 591 LRERLKELKKKLKELEERLSQL----------------EELLQSLELSEAENE------- 627

Query: 632 LPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSEL 691
              ++ +   L  E  +L L          Q  +   + A + EL  + EEL   +  EL
Sbjct: 628 ---LEEAEEELESELEKLNL----------QAELEELLQAALEELEEKVEELEAEIRREL 674

Query: 692 AQSSKLKDLNN------ELSRKLEHQTQRLELLTAQ 721
            +    + L        +L  +LE   + LE L  +
Sbjct: 675 QRIENEEQLEEKLEELEQLEEELEQLREELEELLKK 710

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	776
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.47
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.38
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.36
PRK02224	880	chromosome segregation protein; Provisional	98.31
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.31
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.1
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.07
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.0
PRK02224	880	chromosome segregation protein; Provisional	97.92
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.87
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.87
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.77
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.75
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.72
PRK11637	428	AmiB activator; Provisional	97.59
PRK03918	880	chromosome segregation protein; Provisional	97.52
PHA02562	562	46 endonuclease subunit; Provisional	97.43
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	97.35
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.32
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.3
PHA02562	562	46 endonuclease subunit; Provisional	97.25
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.24
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.23
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.17
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	97.12
PRK11637	428	AmiB activator; Provisional	97.11
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.11
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	97.1
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.07
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.07
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	97.02
PRK09039	343	hypothetical protein; Validated	96.99
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.94
PRK03918	880	chromosome segregation protein; Provisional	96.93
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.92
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.92
PRK04863	1486	mukB cell division protein MukB; Provisional	96.89
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.88
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	96.88
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	96.87
PRK04778	569	septation ring formation regulator EzrA; Provision	96.86
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.79
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.78
PRK04863	1486	mukB cell division protein MukB; Provisional	96.72
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	96.7
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.66
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.62
PRK09039	343	hypothetical protein; Validated	96.6
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.5
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.4
COG4372	499	Uncharacterized protein conserved in bacteria with	96.39
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	96.35
PF14662	193	CCDC155: Coiled-coil region of CCDC155	96.35
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.33
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.3
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.29
PRK10361	475	DNA recombination protein RmuC; Provisional	96.27
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.24
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	96.22
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	96.22
KOG0996	1293	consensus Structural maintenance of chromosome pro	96.19
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.19
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.17
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.15
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.07
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.06
cd07651	236	F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology	96.02
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.01
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.0
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.96
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	95.96
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.89
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.82
PRK11281	1113	hypothetical protein; Provisional	95.81
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.81
KOG0996	1293	consensus Structural maintenance of chromosome pro	95.81
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.81
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	95.78
PF13514	1111	AAA_27: AAA domain	95.77
KOG4673	961	consensus Transcription factor TMF, TATA element m	95.75
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.75
PRK04778	569	septation ring formation regulator EzrA; Provision	95.74
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	95.74
KOG0933	1174	consensus Structural maintenance of chromosome pro	95.73
PF13166	712	AAA_13: AAA domain	95.73
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.72
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.68
PF10186	302	Atg14: UV radiation resistance protein and autopha	95.62
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	95.61
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	95.52
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.51
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	95.51
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.48
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.48
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.37
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.35
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.28
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	95.14
cd07647	239	F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/	95.14
COG4942	420	Membrane-bound metallopeptidase [Cell division and	95.06
KOG0979	1072	consensus Structural maintenance of chromosome pro	95.02
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.0
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.94
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.87
cd07655	258	F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/	94.86
COG4942	420	Membrane-bound metallopeptidase [Cell division and	94.83
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	94.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	94.71
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.68
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	94.65
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	94.63
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.62
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	94.56
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.54
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	94.49
KOG1103	561	consensus Predicted coiled-coil protein [Function	94.47
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.43
COG5185	622	HEC1 Protein involved in chromosome segregation, i	94.42
cd07671	242	F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin	94.39
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.33
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	94.32
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.3
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	94.23
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.13
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	94.1
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	94.09
PF13514	1111	AAA_27: AAA domain	94.03
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	94.0
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	93.94
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	93.94
PRK10476	346	multidrug resistance protein MdtN; Provisional	93.84
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	93.79
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	93.69
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.63
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	93.63
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.62
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	93.6
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	93.58
KOG0243	1041	consensus Kinesin-like protein [Cytoskeleton]	93.5
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	93.49
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.42
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	93.32
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	93.28
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.28
PRK01156	895	chromosome segregation protein; Provisional	93.26
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	93.03
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.01
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	92.79
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.75
KOG4673	961	consensus Transcription factor TMF, TATA element m	92.73
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	92.7
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	92.69
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	92.67
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.65
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.61
KOG0288	459	consensus WD40 repeat protein TipD [General functi	92.57
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	92.35
PF05546	207	She9_MDM33: She9 / Mdm33 family; InterPro: IPR0088	92.34
COG4372	499	Uncharacterized protein conserved in bacteria with	92.31
KOG0018	1141	consensus Structural maintenance of chromosome pro	92.27
PRK10929	1109	putative mechanosensitive channel protein; Provisi	92.26
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	92.15
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	92.13
cd07658	239	F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin	92.04
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	92.02
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.97
cd07672	240	F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin	91.95
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	91.86
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	91.82
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	91.81
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	91.71
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	91.65
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	91.57
PF02050	123	FliJ: Flagellar FliJ protein; InterPro: IPR012823	91.52
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	91.5
PRK11281	1113	hypothetical protein; Provisional	91.44
PRK15422	79	septal ring assembly protein ZapB; Provisional	91.42
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	91.22
PRK10884	206	SH3 domain-containing protein; Provisional	91.09
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	91.09
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	91.06
KOG0249	916	consensus LAR-interacting protein and related prot	91.05
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.94
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	90.91
PRK10884	206	SH3 domain-containing protein; Provisional	90.85
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	90.78
PF13166	712	AAA_13: AAA domain	90.78
PRK10929	1109	putative mechanosensitive channel protein; Provisi	90.75
PRK10246	1047	exonuclease subunit SbcC; Provisional	90.7
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	90.69
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	90.5
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	90.44
KOG0249	916	consensus LAR-interacting protein and related prot	90.4
KOG0971	1243	consensus Microtubule-associated protein dynactin	90.37
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	90.37
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	90.28
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	90.25
PF04380	79	BMFP: Membrane fusogenic activity; InterPro: IPR00	90.21
cd07649	233	F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am	90.19
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.11
PRK10698	222	phage shock protein PspA; Provisional	89.93
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	89.86
KOG0963	629	consensus Transcription factor/CCAAT displacement	89.84
cd07680	258	F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin	89.84
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.63
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	89.56
KOG0964	1200	consensus Structural maintenance of chromosome pro	89.48
COG4477	570	EzrA Negative regulator of septation ring formatio	89.32
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	89.3
PRK10476	346	multidrug resistance protein MdtN; Provisional	89.21
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	89.11
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	88.94
cd07653	251	F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B	88.92
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	88.91
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	88.86
PF10234	267	Cluap1: Clusterin-associated protein-1; InterPro:	88.75
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.57
PF07200	150	Mod_r: Modifier of rudimentary (Mod(r)) protein; I	88.43
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.1
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	88.06
PRK03598	331	putative efflux pump membrane fusion protein; Prov	87.92
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	87.9
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	87.81
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.8
cd07622	201	BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S	87.72
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.59
PF14362	301	DUF4407: Domain of unknown function (DUF4407)	87.44
KOG4438	446	consensus Centromere-associated protein NUF2 [Cell	87.22
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.2
KOG2129	552	consensus Uncharacterized conserved protein H4 [Fu	87.19
cd07675	252	F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/	87.14
KOG2264	907	consensus Exostosin EXT1L [Signal transduction mec	86.87
TIGR02473	141	flagell_FliJ flagellar export protein FliJ. Member	86.85
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.84
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	86.81
cd07656	241	F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/A	86.75
PRK11519	719	tyrosine kinase; Provisional	86.7
PRK10869	553	recombination and repair protein; Provisional	86.65
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	86.62
cd07666	243	BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S	86.61
PRK10722	247	hypothetical protein; Provisional	86.46
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	86.29
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	86.2
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	86.07
PF15294	278	Leu_zip: Leucine zipper	86.06
PRK15178	434	Vi polysaccharide export inner membrane protein Ve	85.99
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	85.96
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	85.94
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	85.91
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	85.84
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	85.59
PF13942	179	Lipoprotein_20: YfhG lipoprotein	85.53
KOG0979	1072	consensus Structural maintenance of chromosome pro	85.52
TIGR02231	525	conserved hypothetical protein. This family consis	85.52
COG2433	652	Uncharacterized conserved protein [Function unknow	85.24
TIGR02231	525	conserved hypothetical protein. This family consis	85.17
KOG1962	216	consensus B-cell receptor-associated protein and r	85.14
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	85.02
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	84.82
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.73
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	84.48
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	84.01
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.79
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	83.67
cd07657	237	F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin	83.65
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	83.55
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.49
cd09234	337	V_HD-PTP_like Protein-interacting V-domain of mamm	83.47
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.36
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	83.33
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	83.24
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	83.19
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	82.88
cd07676	253	F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A	82.75
PF12777	344	MT: Microtubule-binding stalk of dynein motor; Int	82.68
cd07624	200	BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o	82.66
PRK10698	222	phage shock protein PspA; Provisional	82.63
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	82.61
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	82.36
KOG0244	913	consensus Kinesin-like protein [Cytoskeleton]	82.3
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	82.29
cd07652	234	F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am	82.24
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	82.21
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	82.17
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	81.92
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	81.57
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	81.55
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	81.51
PF08606	70	Prp19: Prp19/Pso4-like; InterPro: IPR013915 This r	81.49
COG2433	652	Uncharacterized conserved protein [Function unknow	81.46
PF13815	118	Dzip-like_N: Iguana/Dzip1-like DAZ-interacting pro	81.34
PRK15136	390	multidrug efflux system protein EmrA; Provisional	81.32
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	81.17
PF03938	158	OmpH: Outer membrane protein (OmpH-like); InterPro	81.01
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	80.96
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.72
PRK03598	331	putative efflux pump membrane fusion protein; Prov	80.62
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	80.11

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.47  E-value=0.00028  Score=81.21  Aligned_cols=165  Identities=18%  Similarity=0.318  Sum_probs=77.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .+...|++.++++..+--.+...+.....-.+++..+-..+..........+..++.++++++.++......++.+..+.
T Consensus       677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~  756 (1179)
T TIGR02168       677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL  756 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555554444455444444444444444455555555555555444444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      ..+..++....++...+..++..|+.++..++...-.++.++..+..++..++.++..+..+...++..+..|+.+.+.+
T Consensus       757 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l  836 (1179)
T TIGR02168       757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT  836 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444333322223334444444444444444444444444444444444444444


Q ss_pred             HHHHH
Q 004063          580 QSKLR  584 (776)
Q Consensus       580 qSKLR  584 (776)
                      +.++.
T Consensus       837 ~~~~~  841 (1179)
T TIGR02168       837 ERRLE  841 (1179)
T ss_pred             HHHHH
Confidence            44433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.38  E-value=0.00017  Score=82.85  Aligned_cols=100  Identities=25%  Similarity=0.311  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .+...|++.++++..+.-.+...++..+.-.+.+-.+-..+...++.....+..++.++++++.++......++.+..+.
T Consensus       684 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~  763 (1179)
T TIGR02168       684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI  763 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555555544444444444444555555555555555555555544444444444444444


Q ss_pred             HHHHHhhhHHHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILASE  519 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaE  519 (776)
                      +....+...+.+....+..+
T Consensus       764 ~~~~~~l~~~~~~~~~l~~~  783 (1179)
T TIGR02168       764 EELEERLEEAEEELAEAEAE  783 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444443333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.36  E-value=0.0003  Score=81.58  Aligned_cols=168  Identities=22%  Similarity=0.296  Sum_probs=115.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  498 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  498 (776)
                      ..++..|+.-|+.|..+--.+...+.....-.+.|..+-..+.....+-...+..++.+++.+..++..-...+..+..+
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~  752 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE  752 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888888888888888888888777777777777777777777777777777777766666655555666666


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH----h-hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          499 YANVRLECNAADERAKILASEVIGLEEKALRLRSN----E-LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~----e-LKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ...+..++.....+...+..++..|+.++..+...    . -+.+.++..+..++..+..++..+..+...+...++.|+
T Consensus       753 ~~~~~~el~~l~~~i~~l~~~i~~l~~el~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~  832 (1164)
T TIGR02169       753 IENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE  832 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666665555544321    1 113445666777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhh
Q 004063          574 EEKKMMQSKLRKA  586 (776)
Q Consensus       574 EEKklLqSKLR~a  586 (776)
                      .+...++.++...
T Consensus       833 ~e~~~l~~~~~~l  845 (1164)
T TIGR02169       833 KEIQELQEQRIDL  845 (1164)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777666644

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.31  E-value=0.00062  Score=78.55  Aligned_cols=12  Identities=25%  Similarity=0.069  Sum_probs=6.2

Q ss_pred             CCccccCCCCcc
Q 004063          207 SNAIALGNGHSF  218 (776)
Q Consensus       207 sn~~~~~~g~s~  218 (776)
                      -|.|.-.||+|=
T Consensus        25 ~~~i~G~Ng~GK   36 (880)
T PRK02224         25 VTVIHGVNGSGK   36 (880)
T ss_pred             eEEEECCCCCCH
Confidence            355555555554

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.31  E-value=0.0021  Score=74.81  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=31.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  466 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq  466 (776)
                      .++..++..+++++.+.-.+...++....-.+.+-.+-..+...++.
T Consensus       237 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  283 (1164)
T TIGR02169       237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKD  283 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34555666667777777777777777666666666666666666666

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.10  E-value=0.0046  Score=74.75  Aligned_cols=70  Identities=26%  Similarity=0.353  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  491 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~  491 (776)
                      -..|+..+..+..+.-.|...+...++-...+..+..++.+..+.....+.++...+.+++.++.....+
T Consensus       732 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  801 (1163)
T COG1196         732 LEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE  801 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555544444444444444444444444444444444444444443333333333333333

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.07  E-value=0.0013  Score=82.99  Aligned_cols=237  Identities=23%  Similarity=0.309  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 004063          444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL-------VELESFRNEYANVRLECNAADERAKIL  516 (776)
Q Consensus       444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~-------~~le~l~aErDaAq~E~n~A~ERaK~L  516 (776)
                      +.+.++-+.|..+...+-..+..-...+.++++....|+.+.....       ..++.+-..+..+++|.+.+..+.+.|
T Consensus       890 ~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l  969 (1930)
T KOG0161|consen  890 AEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNL  969 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555556666666666666655555555554444333333322       233333444556777777777777777


Q ss_pred             HHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 004063          517 ASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK  585 (776)
Q Consensus       517 AaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQ-------EEKklLqSKLR~  585 (776)
                      .-|+..+++.+-.|    .|..|++|.    +...+..-+.++..+.+-+..+...|+-|+       .-.+.++.+.|+
T Consensus       970 ~~e~~~~~e~~~kL----~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rk 1045 (1930)
T KOG0161|consen  970 EEEINSLDENISKL----SKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRK 1045 (1930)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777766644    333344433    333444444555555555555444444443       222344444454


Q ss_pred             hccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHH
Q 004063          586 ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRM  665 (776)
Q Consensus       586 asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~  665 (776)
                      ..+.-+..            ..+-+++.....-.   ...+.    ..+.++              +.- -.-.+|.-++
T Consensus      1046 le~el~~~------------~e~~~~~~~~~~el---~~~l~----kke~El--------------~~l-~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1046 LEGELKDL------------QESIEELKKQKEEL---DNQLK----KKESEL--------------SQL-QSKLEDEQAE 1091 (1930)
T ss_pred             HHHHHHHh------------hhHHHHHHHHHHHH---HHHHH----HHHHHH--------------HHH-HHHhhHHHHH
Confidence            44332221            11111110000000   00000    001111              000 1234566688


Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHH
Q 004063          666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELL  718 (776)
Q Consensus       666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELl  718 (776)
                      +..+--.|.+|.....+|-..|..+.....++.+.+.||.++|++++.+||.+
T Consensus      1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999988

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.00  E-value=0.0073  Score=73.13  Aligned_cols=242  Identities=22%  Similarity=0.327  Sum_probs=123.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS-------SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  493 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-------aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  493 (776)
                      +...|+.+|+++..+...+...+.....-...+-..-+       .+..++..-...+..++.+.++++..+...-..++
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  747 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE  747 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667777777776666666555555444444444433       33444444444444444444555555444444444


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063          494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  566 (776)
Q Consensus       494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~  566 (776)
                      .+..+.+..+.+.++..+....+......|++++..+.       ...-..+.++..++.++..+..++......+..+.
T Consensus       748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  827 (1163)
T COG1196         748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE  827 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444333       22233333444444444455555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCcc
Q 004063          567 STIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPES  646 (776)
Q Consensus       567 stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~  646 (776)
                      ..|+.++++...++.++......-...               ...+       +....+                     
T Consensus       828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~---------------~~~~-------~~~~~~---------------------  864 (1163)
T COG1196         828 QEIEELEEEIEELEEKLDELEEELEEL---------------EKEL-------EELKEE---------------------  864 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHH---------------HHHH-------HHHHHH---------------------
Confidence            566666666665555555322211100               0000       000000                     


Q ss_pred             cccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHH
Q 004063          647 GRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL  717 (776)
Q Consensus       647 g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL  717 (776)
                                  -......+.+++.-|..++.+++.+-..|+.......+++.....+..++..+..+++.
T Consensus       865 ------------l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  923 (1163)
T COG1196         865 ------------LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER  923 (1163)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        01112456677777777777777777777777777777777777777776655444433

>PRK02224 chromosome segregation protein; Provisional

Probab=97.92  E-value=0.018  Score=66.83  Aligned_cols=165  Identities=18%  Similarity=0.268  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY-------NQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~y-------NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      .++..|++.|.++..+.-.+...+.......+.|-.+.+.|....       ........+|..+.+.|+.++......+
T Consensus       258 ~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~~~~~~l  337 (880)
T PRK02224        258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAA  337 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555544444443322       2233334455555555666555555555


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063          493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  572 (776)
Q Consensus       493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  572 (776)
                      ..+..+....+....+..++.+.+..++..|+.++..++..-=.++++++.+..+++.++.++..+..+..++...|+.|
T Consensus       338 ~~~~~~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l  417 (880)
T PRK02224        338 QAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL  417 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHH
Confidence            55544444444455555555555555555555555444444444455555555555555555554454555555555666


Q ss_pred             HHHHHHHHHHHH
Q 004063          573 QEEKKMMQSKLR  584 (776)
Q Consensus       573 QEEKklLqSKLR  584 (776)
                      |+++..|+.++-
T Consensus       418 ~~~~~~l~~~~~  429 (880)
T PRK02224        418 REERDELREREA  429 (880)
T ss_pred             HHHHHHHHHHHH
Confidence            655555554443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.87  E-value=0.035  Score=63.54  Aligned_cols=153  Identities=24%  Similarity=0.279  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063          425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  504 (776)
Q Consensus       425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  504 (776)
                      ||..|+++-+||-.|+.....-.+-+++|-.+++.|-       ..+...+.++++|+++.+.-....+.+..|++....
T Consensus       141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~-------~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~  213 (546)
T PF07888_consen  141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLE-------AELEQEEEEMEQLKQQQKELTESSEELKEERESLKE  213 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999988777666555555555555554       455555566666666666666677888999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhhhHHHhhh--hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLEN--SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  577 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLR-----S~eLKleKElE~--l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk  577 (776)
                      +..++..|.+.|..++..|..+....-     -..++.+++-.+  ++.++..+..++.....++...+..+++|.++++
T Consensus       214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr  293 (546)
T PF07888_consen  214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR  293 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            999999999999999998888874321     122222222111  2333444444444444445566666677777777


Q ss_pred             HHHHHHH
Q 004063          578 MMQSKLR  584 (776)
Q Consensus       578 lLqSKLR  584 (776)
                      .++.+|.
T Consensus       294 ~~qe~lq  300 (546)
T PF07888_consen  294 SAQEQLQ  300 (546)
T ss_pred             HHHHHHH
Confidence            7777665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.87  E-value=0.0017  Score=82.04  Aligned_cols=159  Identities=22%  Similarity=0.291  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 004063          426 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL--------------QEEIKVQLVE  491 (776)
Q Consensus       426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~L--------------q~Ei~aQ~~~  491 (776)
                      .|+++++-++|--|+.-|+..++..+-+...+..|-...|+-.+.+.-+..++++.              ..-+.--.-.
T Consensus      1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999998555555555555443              3333333444


Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      .+.+..|+|+++.+.......++.|..++..+-+.+-+++...=+++.+++.+..-+....+.+..+++++-.+..+++.
T Consensus      1451 ~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~e 1530 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEE 1530 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55668889999999999999999999999888888877776666666666666655555555555555555555555555


Q ss_pred             HHHHHHHHHHHHH
Q 004063          572 LQEEKKMMQSKLR  584 (776)
Q Consensus       572 LQEEKklLqSKLR  584 (776)
                      ||..+..|+..|+
T Consensus      1531 lQ~aLeElE~~le 1543 (1930)
T KOG0161|consen 1531 LQAALEELEAALE 1543 (1930)
T ss_pred             HHHHHHHHHHHhh
Confidence            5544444444433

>TIGR00606 rad50 rad50

Probab=97.77  E-value=0.0053  Score=75.03  Aligned_cols=163  Identities=14%  Similarity=0.235  Sum_probs=97.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHH---HHhhHHHHHHHHHHHHHHHHHHHHHH--
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL---TDSY---NQQRSVVNQLKSEMEKLQEEIKVQLV--  490 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaL---t~~y---NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~--  490 (776)
                      ..++..|++.|.+++.+.-.+...|+......+.+..+-..+   ....   .+....+..|+.++++|..++..+..  
T Consensus       743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~  822 (1311)
T TIGR00606       743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDR  822 (1311)
T ss_pred             HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence            356777888888888887777777777777777776666433   2222   44455566777777776665554332  


Q ss_pred             -------HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH----------hhhhHHHHHHHHH
Q 004063          491 -------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ----------LENSQSEISSYKK  553 (776)
Q Consensus       491 -------~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE----------lE~l~~Er~S~~~  553 (776)
                             .+..+..+++.++.+.+...+....+..++..|+.++..++...+++.+.          ++.+..++..+..
T Consensus       823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~  902 (1311)
T TIGR00606       823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR  902 (1311)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   23344455555555555557777777777777877777777776665543          3334444444444


Q ss_pred             HHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          554 KISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       554 q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      ++.-+..+-..+...++.++.++..+..
T Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  930 (1311)
T TIGR00606       903 EIKDAKEQDSPLETFLEKDQQEKEELIS  930 (1311)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            4444444444444444444444443333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.75  E-value=0.14  Score=60.06  Aligned_cols=237  Identities=19%  Similarity=0.242  Sum_probs=119.1

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      ....+....||+-|+-       |...|+.+|.+=+.|=..-..|+..=..-...+.+|+.+.|+||..+       ..+
T Consensus       414 ~~~~~a~~rLE~dvkk-------LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl-------~~L  479 (697)
T PF09726_consen  414 NSEPDAISRLEADVKK-------LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL-------QNL  479 (697)
T ss_pred             ccChHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            3445666677766654       66777777777777766655565544456667777777777777643       233


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhh----HHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS----QSEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l----~~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      ..-+..=++.+....-|.+..+.-...||.++...|....+.+-...+.    ...|.   ---+.....|.+|..+|.+
T Consensus       480 ~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~---e~~e~~r~r~~~lE~E~~~  556 (697)
T PF09726_consen  480 VQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQ---ECAESCRQRRRQLESELKK  556 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccc---hhHHHHHHHHHHHHHHHHH
Confidence            2223332233333333333333334444444443333322211111110    00000   0111233445667777777


Q ss_pred             HHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCccccccc
Q 004063          572 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL  651 (776)
Q Consensus       572 LQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af  651 (776)
                      |+-|+|..+..++.+.........-.     ++   +-.|.+++--+.-                               
T Consensus       557 lr~elk~kee~~~~~e~~~~~lr~~~-----~e---~~~~~e~L~~aL~-------------------------------  597 (697)
T PF09726_consen  557 LRRELKQKEEQIRELESELQELRKYE-----KE---SEKDTEVLMSALS-------------------------------  597 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hh---hhhhHHHHHHHHH-------------------------------
Confidence            77777777776665444221100000     00   0011111111110                               


Q ss_pred             ccccccchhhHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          652 EGLAVNIPHDQMRMIHNINALISELALE---KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       652 ~~~~~~Ip~DQlR~IdsInaLisELa~E---ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                                  .|-|-=..|=..|..|   |=.|.+||-++.|++..+..+-..=.+++++++++|.-+.|
T Consensus       598 ------------amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a  657 (697)
T PF09726_consen  598 ------------AMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA  657 (697)
T ss_pred             ------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                        2222222222333333   45688899999999888888888888888889998865544

; GO: 0016021 integral to membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.72  E-value=0.004  Score=70.84  Aligned_cols=60  Identities=22%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063          664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM  723 (776)
Q Consensus       664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m  723 (776)
                      +.-|.=+-.|+|..+|..++-++|+-.-..=-+|.+.|.||.+-.+.+.+||+-.+.-.-
T Consensus       403 ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~~~~~  462 (546)
T PF07888_consen  403 KEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVADEKW  462 (546)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            444444457899999999999999999998899999999999999999999998865443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK11637 AmiB activator; Provisional

Probab=97.59  E-value=0.031  Score=60.74  Aligned_cols=79  Identities=13%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      ...++...|++-|+++-++.-.++..+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus        44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677777777777777776666666666666666666666777777776666666666666666665555444433

>PRK03918 chromosome segregation protein; Provisional

Probab=97.52  E-value=0.25  Score=57.37  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      .+.|++.|+.+..++-.+...++..+.          --+.|..+...+-.+|+.....+.+++.+++.|+++
T Consensus       202 ~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~  274 (880)
T PRK03918        202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKE  274 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555444433322          222333333344445555444455555554444444

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.43  E-value=0.11  Score=57.17  Aligned_cols=34  Identities=18%  Similarity=0.315  Sum_probs=15.0

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       462 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      ++|.+-...+..|+.+++.++.++......++.+
T Consensus       174 ~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~  207 (562)
T PHA02562        174 DKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ  207 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3333444444445555555554444333333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=97.35  E-value=0.22  Score=56.33  Aligned_cols=217  Identities=23%  Similarity=0.263  Sum_probs=137.0

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh-------h
Q 004063          463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------L  535 (776)
Q Consensus       463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e-------L  535 (776)
                      ........+.+.+..|+....|+..=...+++|+.|....+.+.+...++......+|..|+.++.++|+.-       -
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~  361 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE  361 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            356667777788888888888888888999999999999999999999999999999999999999988763       1


Q ss_pred             -------hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccc
Q 004063          536 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTS  608 (776)
Q Consensus       536 -------KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTS  608 (776)
                             .+...|+.+..|.+.+++.......|...+..+++...-..+-++.||+-+--.-.++        +.....+
T Consensus       362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa--------KasEa~A  433 (522)
T PF05701_consen  362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA--------KASEALA  433 (522)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
Confidence                   1334455556666666666666666666666666666666666666666322111111        1111123


Q ss_pred             cccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004063          609 TEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALS  688 (776)
Q Consensus       609 TdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa  688 (776)
                      ..+|    ++...+         .+.......+          .+..+.|+      ++--..|......=.+-+-...+
T Consensus       434 la~i----k~l~e~---------~~~~~~~~~~----------~~~~Vtls------~eEy~~L~~ka~e~ee~a~kkva  484 (522)
T PF05701_consen  434 LAEI----KALSES---------ESSSRASDSE----------SSSKVTLS------LEEYESLSKKAEEAEELAEKKVA  484 (522)
T ss_pred             HHHH----HHhhcc---------cccccccccC----------CCCCeeec------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333    111000         0000111101          11114455      33344555555555555555677


Q ss_pred             HHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063          689 SELAQSSKLKDLNNELSRKLEHQTQRLE  716 (776)
Q Consensus       689 ~esr~~~dLk~lN~ELsRKLE~qtQRLE  716 (776)
                      .+..++..++.-.++.-.|||.....+|
T Consensus       485 ~A~aqve~ak~se~e~l~kle~~~~e~~  512 (522)
T PF05701_consen  485 AAMAQVEAAKASEKEILEKLEEAMKEIE  512 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888999889888877655

Several sequences in this family are described as being myosin heavy chain-like.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.32  E-value=0.022  Score=60.25  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=22.5

Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHhhh----hHHHHHHHHHHHHHHHHHHH
Q 004063          538 ERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQEEKKMMQSKL  583 (776)
Q Consensus       538 eKElE~l~~Er~S~~~q~ssi~kER~----~l~stIdaLQEEKklLqSKL  583 (776)
                      ..+++.+..++..+..++..+++.+.    -=..+|.+|+.+.+.||...
T Consensus       243 ~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  243 EEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444433332    22356667777777666543

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.30  E-value=0.042  Score=66.61  Aligned_cols=140  Identities=18%  Similarity=0.288  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-------HHHHHHHHHhhhHHHHHHHHH
Q 004063          444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-------RNEYANVRLECNAADERAKIL  516 (776)
Q Consensus       444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-------~aErDaAq~E~n~A~ERaK~L  516 (776)
                      ...++-.+..-..++++..+++.--.++++++++.+.--.||+.-...+..+       +.++..++....+...+...|
T Consensus       298 ~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l  377 (1074)
T KOG0250|consen  298 DTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRL  377 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555556666776666666666666665555555554444444444       444444444445555555555


Q ss_pred             HHHHHHHHHHH-HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063          517 ASEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  583 (776)
Q Consensus       517 AaEVV~LEek~-lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  583 (776)
                      -.++..++++. ..+-+...+.+.+++.|..|+..++-++.+|..|++.|+..+...|||+-..+.++
T Consensus       378 ~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i  445 (1074)
T KOG0250|consen  378 EKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI  445 (1074)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            55555555555 44455556777888888888888888888888888888888888888875554433

>PHA02562 46 endonuclease subunit; Provisional

Probab=97.25  E-value=0.07  Score=58.58  Aligned_cols=75  Identities=19%  Similarity=0.208  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH---HHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          510 DERAKILASEVIGLEEKAL---RLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       510 ~ERaK~LAaEVV~LEek~l---qLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +++.+.|..+...|++.+.   +.+..--++.+.+++++.++...+..+..+..++..++..|+.|+++...+..+|+
T Consensus       305 ~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        305 KDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            3344445555555555544   22222333455555666666666666666666666666666666644333333333

>TIGR00606 rad50 rad50

Probab=97.24  E-value=0.036  Score=68.04  Aligned_cols=125  Identities=10%  Similarity=0.117  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 004063          458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL  537 (776)
Q Consensus       458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl  537 (776)
                      ..|...-++++..+..++.+++-|+.++..-...++.++.+.+....+........+....++..|..+|...  .....
T Consensus       891 ~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y--~~~~~  968 (1311)
T TIGR00606       891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK--IQDGK  968 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCC
Confidence            3344444444444444444444444444444444444443333333333333333333333333344444332  11222


Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      .++++.+..++..+...+..++.+...+...|+++..+...++..-|
T Consensus       969 ~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr 1015 (1311)
T TIGR00606       969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQER 1015 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444444444444444444433333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.23  E-value=0.091  Score=54.91  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----h
Q 004063          519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----A  586 (776)
Q Consensus       519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi--------~kER~~l~stIdaLQEEKklLqSKLR~----a  586 (776)
                      ++...+.++.+++.....++.++..++.++..++.++..+        ..++.++...+..++.+...++.+|.+    +
T Consensus       197 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A  276 (423)
T TIGR01843       197 ELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS  276 (423)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence            3444444444444444444444444444444444444332        233444555555555555555555553    3


Q ss_pred             ccCCCc
Q 004063          587 SGSGKS  592 (776)
Q Consensus       587 sa~gKa  592 (776)
                      +-.|.+
T Consensus       277 P~dG~V  282 (423)
T TIGR01843       277 PVDGTV  282 (423)
T ss_pred             CCCcEE
Confidence            445554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.17  E-value=0.66  Score=55.30  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=17.6

Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ..+..++..+.+++..+...++.+.++.+.++..+.
T Consensus       406 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~  441 (908)
T COG0419         406 EEIQEELEELEKELEELERELEELEEEIKKLEEQIN  441 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555555555555554444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=97.12  E-value=0.14  Score=53.47  Aligned_cols=63  Identities=22%  Similarity=0.351  Sum_probs=37.5

Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhh
Q 004063          524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~--------stIdaLQEEKklLqSKLR~a  586 (776)
                      +.+....+..-..++.++..++.++..++.++..+..+...+.        ..+..++.+++.++.++..+
T Consensus       195 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~  265 (423)
T TIGR01843       195 RLELLELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKA  265 (423)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666677777777777777777666655544322        23345556666666666643

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK11637 AmiB activator; Provisional

Probab=97.11  E-value=0.23  Score=54.07  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      .++..+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+
T Consensus        54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l  126 (428)
T PRK11637         54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL  126 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666666666666666666655555555555555555666666666666666666666655554443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.11  E-value=0.12  Score=63.46  Aligned_cols=56  Identities=20%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          665 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       665 ~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                      +.+-...|..+++.-+.++-.....-.....+++...+++.++++.+.+.++.+..
T Consensus       814 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~  869 (1201)
T PF12128_consen  814 LREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEE  869 (1201)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555554444444444444444555666666666666666665555444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=97.10  E-value=1.4  Score=55.12  Aligned_cols=111  Identities=16%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 004063          408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ  482 (776)
Q Consensus       408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq-----Q~~~v~qLk~~mE~Lq  482 (776)
                      +-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+...    -+.||+     ....+-..+.+++.++
T Consensus       208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~  282 (1353)
T TIGR02680       208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS  282 (1353)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999998887776665544333333 333322    344444     2223333344444444


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063          483 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  523 (776)
Q Consensus       483 ~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L  523 (776)
                      .++......++....+.+.++.++.....+...+..|...|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l  323 (1353)
T TIGR02680       283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL  323 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44444334444444444444444444444444444443333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.07  E-value=0.085  Score=63.33  Aligned_cols=107  Identities=26%  Similarity=0.383  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHh
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC-NAADERAKILASEVIGLEEKALRLR-------SNELKLERQL  541 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~-n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKEl  541 (776)
                      .+.-|+-++|.|++-+..-...||-+++|..+-=-.. +...-+-|.|...-+.|-+-+-|||       -...|+.|++
T Consensus       326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel  405 (1243)
T KOG0971|consen  326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL  405 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3445566666666666666666777777766532222 1223344444444455555554444       4567888888


Q ss_pred             hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          542 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       542 E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      |..+.|+.-+++.-+.+..+=+.+.++|.-|||..
T Consensus       406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV  440 (1243)
T KOG0971|consen  406 EKKNSELEELRRQKERLSRELDQAESTIADLKEQV  440 (1243)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888765

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.07  E-value=0.29  Score=56.87  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=32.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004063          664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN  702 (776)
Q Consensus       664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~  702 (776)
                      +|...+++.+..++.||++|...|......|-.|-.+-+
T Consensus       346 ~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va  384 (617)
T PF15070_consen  346 AMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVA  384 (617)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            678899999999999999999999888777766644433

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=97.02  E-value=0.23  Score=59.59  Aligned_cols=158  Identities=22%  Similarity=0.247  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063          424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  503 (776)
Q Consensus       424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq  503 (776)
                      ..+|..-+....|+.|-+.+..+|+..+++-.-+.+|-=.+++|.-...+-..+-|||++|.+-+++    .+.+-+.|+
T Consensus       334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a----~r~q~eka~  409 (980)
T KOG0980|consen  334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLA----SRTQLEKAQ  409 (980)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            4567777888899999999999999999999999999999999999998888888888887443322    222222222


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh----------------------------HHHhhhhHHHHHHHHHHH
Q 004063          504 LECNAADERAKILASEVIGLEEKALRLRSNELKL----------------------------ERQLENSQSEISSYKKKI  555 (776)
Q Consensus       504 ~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl----------------------------eKElE~l~~Er~S~~~q~  555 (776)
                      --..++.-.+.........|-++..+||....-+                            ...++++..+.....+++
T Consensus       410 ~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~  489 (980)
T KOG0980|consen  410 VLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKT  489 (980)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            2222222333333444455555555555543322                            233455555666666677


Q ss_pred             HhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          556 SSLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       556 ssi~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      +.+.+-=.++.-++..|++|.+.||.++-+
T Consensus       490 e~~~~~le~l~~El~~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  490 ESQAKALESLRQELALLLIELEELQRTLSN  519 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            766666666777777777777777777654

>PRK09039 hypothetical protein; Validated

Probab=96.99  E-value=0.091  Score=56.58  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      ...+..|+..|+.+...+.....+.+.+-.++..|++.|+..+.++..++.+++..-.+.+..|+.|+.++..+
T Consensus       111 ~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        111 GAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666655555555555555444333

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.94  E-value=0.082  Score=56.61  Aligned_cols=77  Identities=29%  Similarity=0.304  Sum_probs=36.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHHHHHHHHHHHHHHH
Q 004063          506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~stIdaLQEEKklLqS  581 (776)
                      +..+.+..+.+-.|+...-.++.+++.+.-++...++....++..+..++..+++.    |+-=.++|.+|+.+...||.
T Consensus       206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444333344444444444444444444444442    33334566677776666665


Q ss_pred             H
Q 004063          582 K  582 (776)
Q Consensus       582 K  582 (776)
                      .
T Consensus       286 l  286 (312)
T smart00787      286 L  286 (312)
T ss_pred             H
Confidence            3

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PRK03918 chromosome segregation protein; Provisional

Probab=96.93  E-value=0.26  Score=57.23  Aligned_cols=74  Identities=14%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          503 RLECNAADERAKILASEVIGLEEKALRLRSNELKL------ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl------eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      ...+..-.++.+.+..|+..|++++.+++...-+.      .+.++.+......+...+..+.+++..+...++.|++++
T Consensus       251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l  330 (880)
T PRK03918        251 EGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555555555555555443222111      111222333333444555555555555555555554444

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.92  E-value=0.04  Score=57.46  Aligned_cols=118  Identities=25%  Similarity=0.332  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------HhhhhHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS---------NELKLER  539 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS---------~eLKleK  539 (776)
                      ..+..|--++.+|...+.-+.-+|+.+++|..++.-.+.+.......|.-+|..+|.++..+|.         .-+|.++
T Consensus        10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~   89 (239)
T COG1579          10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER   89 (239)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            3444555555555555555555555555555555555555555555555555555555544443         4466677


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      ++..|..|+....++...++.|=.+|...++.|+++...++.++.++
T Consensus        90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~  136 (239)
T COG1579          90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERL  136 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999988888888753

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.32  Score=58.04  Aligned_cols=140  Identities=24%  Similarity=0.279  Sum_probs=76.5

Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCccccc
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHD  628 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~  628 (776)
                      -..+.++..+.+-|+-++++|+-||-+.|.+|.||.++.-. |.. .             ++-|    .+..+.+.+   
T Consensus       468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~E-kq~-l-------------~~ql----kq~q~a~~~---  525 (1118)
T KOG1029|consen  468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPE-KQE-L-------------NHQL----KQKQSAHKE---  525 (1118)
T ss_pred             chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHH-H-------------HHHH----HHhhhhccC---
Confidence            34456667777888888999999999999999999865432 111 0             0000    111000000   


Q ss_pred             ccCCcccCCCCCCCCCccc-ccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh------
Q 004063          629 DASLPRIDASGSTLLPESG-RLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN------  701 (776)
Q Consensus       629 ~as~qe~~vs~~p~~P~~g-~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN------  701 (776)
                                      .++ ...|..-   . ..--.+|.-|.+-++||+.|.+.-++.+-+--.++.+||+.-      
T Consensus       526 ----------------~~~~~s~L~aa---~-~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~la  585 (1118)
T KOG1029|consen  526 ----------------TTQRKSELEAA---R-RKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLA  585 (1118)
T ss_pred             ----------------cchHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence                            000 0001000   0 001145677888888888888877777666666666555421      


Q ss_pred             ------HHHHHHHHHHHhHHHHHHHHHhhhhcccc
Q 004063          702 ------NELSRKLEHQTQRLELLTAQNMANENISF  730 (776)
Q Consensus       702 ------~ELsRKLE~qtQRLELltsq~m~~e~~~a  730 (776)
                            ++-...-|.+|.+|||.--+.......++
T Consensus       586 ke~~yk~e~d~~ke~et~~lel~~~ke~e~~~asa  620 (1118)
T KOG1029|consen  586 KEELYKNERDKLKEAETKALELIGEKEAESAPASA  620 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhc
Confidence                  22233345667888887666654444333

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.89  E-value=0.69  Score=58.58  Aligned_cols=50  Identities=10%  Similarity=0.182  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCc
Q 004063          543 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKS  592 (776)
Q Consensus       543 ~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa  592 (776)
                      +|...+..|..++..++.++.++...++.++.+++-+..++.. ....|++
T Consensus       439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv  489 (1486)
T PRK04863        439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV  489 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3455555555566555555555555666666555555555543 3444554

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.88  E-value=0.18  Score=48.55  Aligned_cols=132  Identities=19%  Similarity=0.290  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063          444 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  523 (776)
Q Consensus       444 ~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L  523 (776)
                      +.+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..++.-.+..-...    ..+-.|..-|..|
T Consensus        10 d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~----~~~E~l~rriq~L   85 (143)
T PF12718_consen   10 DNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK----SNAEQLNRRIQLL   85 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhHHHHHhhHHHH
Confidence            334444455555555555555555555555555555555554444444443332222221111    1122566666666


Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      |+++-+.-..---+...|..+....+-+.+++..|+.+|+....-++.|....+.+
T Consensus        86 Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   86 EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            66666554433334455556667778888889888888888887777776655443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=96.88  E-value=0.23  Score=51.97  Aligned_cols=159  Identities=23%  Similarity=0.296  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 004063          429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY  499 (776)
Q Consensus       429 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-------~~~le~l--~aEr  499 (776)
                      |..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..++.++-+++.+|+.-       ...+.++  .-||
T Consensus        12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~   91 (239)
T COG1579          12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL   91 (239)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334555666665555555555555555555555555555555555555555555555433       3333333  5678


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH-
Q 004063          500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQE-  574 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQE-  574 (776)
                      .+...|...|.+|...|-.|++.|++++..+.-...-++..+..    +.+...+.+.++.-|..++..+.+..+.|-+ 
T Consensus        92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~  171 (239)
T COG1579          92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK  171 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888999999999998888888887776654333222222222    3333344445555555555555554444443 


Q ss_pred             ---HHHHHHHHHHhhc
Q 004063          575 ---EKKMMQSKLRKAS  587 (776)
Q Consensus       575 ---EKklLqSKLR~as  587 (776)
                         +.=....++|+..
T Consensus       172 l~~ell~~yeri~~~~  187 (239)
T COG1579         172 LDPELLSEYERIRKNK  187 (239)
T ss_pred             cCHHHHHHHHHHHhcC
Confidence               3344456666443

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=96.87  E-value=1.6  Score=51.87  Aligned_cols=168  Identities=22%  Similarity=0.295  Sum_probs=124.3

Q ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH-------------
Q 004063          411 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE-------------  477 (776)
Q Consensus       411 ~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~-------------  477 (776)
                      -|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..             
T Consensus       256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~  335 (717)
T PF09730_consen  256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE  335 (717)
T ss_pred             chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence            4667777788999999999999999999999999999988888888888888899888888888871             


Q ss_pred             ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 004063          478 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  539 (776)
Q Consensus       478 ------------------mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK  539 (776)
                                        ++-|+....+-..++..++.|..+.+.+++...++.+.   +...++.++..|......+++
T Consensus       336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek  412 (717)
T PF09730_consen  336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK  412 (717)
T ss_pred             cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence                              24455555555566666677777777766666664443   334455555555555555566


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      ....-.+.+..+++++..+..-.++-+..|...|+|+-.+--
T Consensus       413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE  454 (717)
T PF09730_consen  413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE  454 (717)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            666666777888888888888888888788888877654433

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.86  E-value=0.12  Score=58.76  Aligned_cols=146  Identities=19%  Similarity=0.277  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      +.+.|...++..+.|..|=+.|..+|-   .-...+.+++.+++.++.++..-...+..-...|..++-++.+..++...
T Consensus       315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee  394 (569)
T PRK04778        315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE  394 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            455667777777777777777777763   33555667777777777777766666667777788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh--HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss--i~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +..+.+.+.+.+..||..+..+++.++.++..+..+++.+..  +-.--.....-+..++++.+.|..+|.
T Consensus       395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~  465 (569)
T PRK04778        395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELE  465 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888888888888888888888888888777766665552  111123445555566666666655554

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.79  E-value=1  Score=54.99  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004063          441 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV  520 (776)
Q Consensus       441 R~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEV  520 (776)
                      |.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..-...|..++.|-.-+..+.+++...--.|.-++
T Consensus       230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~  309 (1200)
T KOG0964|consen  230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI  309 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45555555666666666666666677777788888888888888888888888888888888888888888887888888


Q ss_pred             HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCcc
Q 004063          521 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSI  593 (776)
Q Consensus       521 V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~  593 (776)
                      -.|++++..-+-++=-+...++++.+++..-..+++.|...+..+..+=+.+-+-...|+.+.+- ..-.|+..
T Consensus       310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s  383 (1200)
T KOG0964|consen  310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS  383 (1200)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            88888888877777778889999999999999999999999999999999999999999998886 44455543

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.78  E-value=0.74  Score=46.61  Aligned_cols=162  Identities=19%  Similarity=0.291  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.+....+---.+-..-+|.
T Consensus        19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el   98 (194)
T PF15619_consen   19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL   98 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999998877776666555555555555555544444445555566655555543332222222222222


Q ss_pred             HHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063          500 ANVRLECNAADERAKILAS-----EVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIE  570 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAa-----EVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stId  570 (776)
                      -.    .....-+.+.|..     |...|..++-.+...--...+.+..    +.-.-.++.+++..-.+--..++..+.
T Consensus        99 ~k----~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~  174 (194)
T PF15619_consen   99 LK----TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVK  174 (194)
T ss_pred             HH----HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22    2222222222222     2333333333332221111222222    222225666666666666778889999


Q ss_pred             HHHHHHHHHHHHHHh
Q 004063          571 ALQEEKKMMQSKLRK  585 (776)
Q Consensus       571 aLQEEKklLqSKLR~  585 (776)
                      .|++|...|+.+|+.
T Consensus       175 ~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  175 SLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999973

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.72  E-value=0.13  Score=64.78  Aligned_cols=146  Identities=18%  Similarity=0.246  Sum_probs=85.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      .+.++.|+.-++.|.+++-.+.+-++...+      -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus       313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL  392 (1486)
T PRK04863        313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV  392 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667777777777666555554443332      23345555566777777777777777777777776666666666


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063          493 ESFRNEYANVRLECNAADERAKILASEVIG------------------------LEEKALRLRSNELKLERQLENSQSEI  548 (776)
Q Consensus       493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~------------------------LEek~lqLRS~eLKleKElE~l~~Er  548 (776)
                      +.++.++...+.+...+..++..+...+..                        .++++.+++....+++.++..+..++
T Consensus       393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~l  472 (1486)
T PRK04863        393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH  472 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666655555555555444443                        34444444455555555555555555


Q ss_pred             HHHHHHHHhHHHhhhh
Q 004063          549 SSYKKKISSLEKERQD  564 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~  564 (776)
                      +.+++++.++.++-+.
T Consensus       473 eql~~~~~~l~~~~Gk  488 (1486)
T PRK04863        473 SQFEQAYQLVRKIAGE  488 (1486)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            5555555555544444

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=96.70  E-value=0.17  Score=62.19  Aligned_cols=169  Identities=24%  Similarity=0.294  Sum_probs=108.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHH---
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQL---  489 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq----Q~~~v~qLk~~mE~Lq~Ei~aQ~---  489 (776)
                      ...+.-+-|++.|+.++.+...|+|   ++.+|++.=..|+......-++    .-..+.+++++|+-+++..+.-+   
T Consensus       462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~  538 (1317)
T KOG0612|consen  462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL  538 (1317)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999998   4444444433333322222222    22344555555655555444332   


Q ss_pred             HHhhhhHHHHHHHHHhhhH-----------HHHHHHHHHHHHH---HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHH
Q 004063          490 VELESFRNEYANVRLECNA-----------ADERAKILASEVI---GLEEKALRLRSNELKLERQLENSQSEISSYKKKI  555 (776)
Q Consensus       490 ~~le~l~aErDaAq~E~n~-----------A~ERaK~LAaEVV---~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~  555 (776)
                      -.+.+++.+.+.+.+++.+           ..+-.+.++.|..   .+++++-.+-....|+.++..+++.+...++++.
T Consensus       539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~  618 (1317)
T KOG0612|consen  539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR  618 (1317)
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333445555555555553           3334444444444   7888888888888999999999999999999998


Q ss_pred             HhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          556 SSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       556 ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      ..+--++..+...|.-||+..+.+...++|+-.
T Consensus       619 ~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e  651 (1317)
T KOG0612|consen  619 TEISEIIAELKEEISSLEETLKAGKKELLKVEE  651 (1317)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence            888888888777777777666555555554433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.66  E-value=0.13  Score=53.07  Aligned_cols=48  Identities=27%  Similarity=0.288  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          673 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       673 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                      +..+..|=.++...+.....+++.|+..|..|.+.|..+.+++.-...
T Consensus       211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~  258 (312)
T PF00038_consen  211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE  258 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence            344444555555556666666666667777777777666666654433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.62  E-value=3  Score=51.61  Aligned_cols=57  Identities=18%  Similarity=0.194  Sum_probs=35.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                      ..++.|..-|..+..+.+++=..|.........++..-..+..+++-..+.|+-+..
T Consensus       607 ~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  663 (1201)
T PF12128_consen  607 ERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKN  663 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            445667777777777776666666666666666666666666665555555444433

>PRK09039 hypothetical protein; Validated

Probab=96.60  E-value=0.15  Score=55.05  Aligned_cols=108  Identities=14%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      +..+.+.+.|+..|.+|++ =++|.|      .-...|-.+-.+|..+|..-...-..|+...+.+......-...+..+
T Consensus        49 ~~~~~eL~~L~~qIa~L~e-~L~le~------~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l  121 (343)
T PRK09039         49 SGKDSALDRLNSQIAELAD-LLSLER------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGEL  121 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHH-HHHHHH------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHH
Confidence            4567777777777777542 122221      222333333344444444222222222222221111000111223334


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILASEVIGLEEKALRL  530 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL  530 (776)
                      ..+.++.+...+++.-+...|.+|+..|++++-.+
T Consensus       122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~l  156 (343)
T PRK09039        122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAAL  156 (343)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777777677777776666665544

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.50  E-value=0.11  Score=56.31  Aligned_cols=141  Identities=17%  Similarity=0.261  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063          435 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  514 (776)
Q Consensus       435 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK  514 (776)
                      ++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-...  ......+..|+......+.+|.++.+
T Consensus        66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~  143 (319)
T PF09789_consen   66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE  143 (319)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence            5667777788888888888888888888887766666666666655544332  22333445899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhh--------------hHHHHHHHHHHHHHHHH
Q 004063          515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ--------------DFQSTIEALQEEKKMMQ  580 (776)
Q Consensus       515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~--------------~l~stIdaLQEEKklLq  580 (776)
                      .|+.++..+-++..     +|+.+++  .+++...++..++.-+-....              -++.-|..+|||+.++.
T Consensus       144 qLe~d~qs~lDEke-----El~~ERD--~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k  216 (319)
T PF09789_consen  144 QLERDLQSLLDEKE-----ELVTERD--AYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLK  216 (319)
T ss_pred             HHHHHHHHHHHHHH-----HHHHHHH--HHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888765     4455555  566667777777665543322              23444555566666655


Q ss_pred             HHHH
Q 004063          581 SKLR  584 (776)
Q Consensus       581 SKLR  584 (776)
                      +.+-
T Consensus       217 ~~i~  220 (319)
T PF09789_consen  217 QTIN  220 (319)
T ss_pred             HHHH
Confidence            5443

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.40  E-value=0.00082  Score=77.21  Aligned_cols=163  Identities=28%  Similarity=0.386  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 004063          424 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF----  495 (776)
Q Consensus       424 aLqqhIeDLT~EKfaLqR~L~~s~~l~Es----La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l----  495 (776)
                      -|++.|.+|.+||-.|+-.+...+.-..+    ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+    
T Consensus       197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei  276 (713)
T PF05622_consen  197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI  276 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888888888887666544433222    2244555666777777777777777766655443333333332    


Q ss_pred             --------------------HHHHHHHHHhhhHHHH------H-------HHHHHHHHHHHHHHHHHHHhHhhhhHHHhh
Q 004063          496 --------------------RNEYANVRLECNAADE------R-------AKILASEVIGLEEKALRLRSNELKLERQLE  542 (776)
Q Consensus       496 --------------------~aErDaAq~E~n~A~E------R-------aK~LAaEVV~LEek~lqLRS~eLKleKElE  542 (776)
                                          +-|+|..+..+..+.-      +       ...|-.+|..|+++..-+.-..+.++.++.
T Consensus       277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~  356 (713)
T PF05622_consen  277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK  356 (713)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                3333333332222111      0       011223444455544444444555566665


Q ss_pred             h---hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          543 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       543 ~---l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      +   ++..+..|++++.-++.++......++.|+.|.+.|+.++..+
T Consensus       357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l  403 (713)
T PF05622_consen  357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL  403 (713)
T ss_dssp             -----------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   5566777777777777777777777777777777777776643

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.39  E-value=0.1  Score=58.21  Aligned_cols=104  Identities=17%  Similarity=0.299  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  549 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~  549 (776)
                      ++..+..+++.++.|+..-.-+...+..||.+++.|+.++.+       |-...+++...+|-+-+|+..++..+.....
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~-------e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q  147 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ-------EREAVRQELAAARQNLAKAQQELARLTKQAQ  147 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777888888777777778888888888888887765       4444556666777788888888888887777


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063          550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ  580 (776)
Q Consensus       550 S~~~q~ssi~kER~~l~stIdaLQEEKklLq  580 (776)
                      .+..++.-+..+|.+++-..+.||-+.|.||
T Consensus       148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888888888777

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=96.35  E-value=0.19  Score=48.67  Aligned_cols=66  Identities=26%  Similarity=0.396  Sum_probs=49.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      .....+.++..++.++++.+......+..++.++...+.......++.+.+..++..+++++.+++
T Consensus        85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~  150 (191)
T PF04156_consen   85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ  150 (191)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456667777777777777777778888888887777777777888888888888888877776

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=96.35  E-value=1.4  Score=45.39  Aligned_cols=126  Identities=21%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  498 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  498 (776)
                      ++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+=   +--.....|++++|.|+..       +..+-++
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~   82 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE   82 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence            44566666667788888999999999999999999988876553   2223334556666666553       2333344


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063          499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  554 (776)
Q Consensus       499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q  554 (776)
                      +....-.|-....-.+.|-++|..|+++-.++-...=++.+..+.|..+...+..+
T Consensus        83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q  138 (193)
T PF14662_consen   83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ  138 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence            44444444444444555566666666655555444444444444444444444433

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.33  E-value=0.43  Score=56.27  Aligned_cols=130  Identities=22%  Similarity=0.303  Sum_probs=66.6

Q ss_pred             HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHhh-hhHHHHHH--------HHH---------hhh
Q 004063          449 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---QLVELE-SFRNEYAN--------VRL---------ECN  507 (776)
Q Consensus       449 l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le-~l~aErDa--------Aq~---------E~n  507 (776)
                      -.++|-.||+.|-.+++.....-.+-|.-|..|++.++.   ++..+| .|.+|+-+        |+-         ||.
T Consensus       461 eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~  540 (697)
T PF09726_consen  461 ELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECA  540 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhH
Confidence            345566677777777766555555545444444433332   222222 33444433        222         333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +      .+-.-+-.||.++.+||.+--..+-++-.+..|+..++.....-.+|-..|.+.|-+|||+-.+|+.-|.
T Consensus       541 e------~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLs  611 (697)
T PF09726_consen  541 E------SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLS  611 (697)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3      2333344555666666543322233333344444333332122456777888889999998888876654

; GO: 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.30  E-value=0.5  Score=57.85  Aligned_cols=166  Identities=23%  Similarity=0.336  Sum_probs=100.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E-----NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      +..+...|+.+|+|+ +||+.-.+.++--.+.-++|-++     .=...+.||.|...+.-.+..+..|++.+.-+...+
T Consensus       233 ~~e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~  311 (1074)
T KOG0250|consen  233 KEEEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKI  311 (1074)
T ss_pred             HHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788899999887 56776555555444444444433     234567888888777776666666666666555544


Q ss_pred             hhh--------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHhHhhhhHHHhhhhHHH----
Q 004063          493 ESF--------------RNEYANVRLECNAADERAKILASEVIGLEEKALR-------LRSNELKLERQLENSQSE----  547 (776)
Q Consensus       493 e~l--------------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq-------LRS~eLKleKElE~l~~E----  547 (776)
                      +.+              +.|-++---||..|.+..+.+..|+..+++++..       +++.-=.++|++..++.+    
T Consensus       312 ~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~  391 (1074)
T KOG0250|consen  312 EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNE  391 (1074)
T ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            443              4566666677788888888888888777766543       333323334444444433    


Q ss_pred             ----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          548 ----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       548 ----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                          +...+.++.-|.+|.-.++..+..|.+|...++.+++
T Consensus       392 ~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~  432 (1074)
T KOG0250|consen  392 LGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK  432 (1074)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3444444455555555555555555555555566655

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.29  E-value=0.063  Score=57.21  Aligned_cols=115  Identities=20%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN  543 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~------aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~  543 (776)
                      .+.+|+.++++.+.|.+.+..-|..+.      .+.+....+..+....-+.|..|+..||.+..++..+.-+++++++.
T Consensus        10 l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~   89 (314)
T PF04111_consen   10 LLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEE   89 (314)
T ss_dssp             --------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777888888888888777776665      33444445555544555555555555555555555544445555555


Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +..+...+-+.+.....+..+++.+.+.|......++..|.
T Consensus        90 l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen   90 LDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55444455555544444444444444444444444444333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=96.27  E-value=0.59  Score=53.16  Aligned_cols=127  Identities=13%  Similarity=0.239  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Q 004063          447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA----DERAKILASEVIG  522 (776)
Q Consensus       447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A----~ERaK~LAaEVV~  522 (776)
                      +.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.+....+-    .+--+.|..|-..
T Consensus        39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~  117 (475)
T PRK10361         39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN  117 (475)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456666666655 55666666666666777777666666666666655544443333222    2222357778888


Q ss_pred             HHHHHHHHHhHhhhhHHH------hhhhHHHHHHHHHHHHhHH----HhhhhHHHHHHHHHH
Q 004063          523 LEEKALRLRSNELKLERQ------LENSQSEISSYKKKISSLE----KERQDFQSTIEALQE  574 (776)
Q Consensus       523 LEek~lqLRS~eLKleKE------lE~l~~Er~S~~~q~ssi~----kER~~l~stIdaLQE  574 (776)
                      |-.++++-++..+.....      |.=+++.+..+++++..+.    ++|..|...|..|++
T Consensus       118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~  179 (475)
T PRK10361        118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQ  179 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998888875444      3448899999999999877    457788888877765

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.24  E-value=0.056  Score=53.36  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .-.+.|++-+.++-..|-.++--|-....-.+.|-.+..+...+-+.....+..|+.++..|..+|+.....++.+..|+
T Consensus        74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~  153 (194)
T PF08614_consen   74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL  153 (194)
T ss_dssp             ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555677777766766677777777777788888888889999999999999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063          500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  535 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL  535 (776)
                      .+.+.+++.+.++.+.|..|=..|=+|.++.+..+-
T Consensus       154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA  189 (194)
T PF08614_consen  154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA  189 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997765543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.22  E-value=0.065  Score=57.11  Aligned_cols=120  Identities=23%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  501 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  501 (776)
                      +..|+++++++..|+-.+++-|.+-+               .=......+.++..+++.|++|...-..+|+.+..|++.
T Consensus        11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~   75 (314)
T PF04111_consen   11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE   75 (314)
T ss_dssp             ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999998776               000112334556666666666554444444444444443


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  577 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk  577 (776)
                                    |.+|...||++..++.       ++-+++-.+...+..++.....||+++..-++.++.++.
T Consensus        76 --------------l~~el~~le~e~~~l~-------~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~  130 (314)
T PF04111_consen   76 --------------LDQELEELEEELEELD-------EEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD  130 (314)
T ss_dssp             --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          3334444444444332       222244445555666666666666666666666666654

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=96.22  E-value=0.73  Score=57.02  Aligned_cols=131  Identities=11%  Similarity=0.122  Sum_probs=84.3

Q ss_pred             HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063          455 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE  534 (776)
Q Consensus       455 ~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e  534 (776)
                      .|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|+.++..|..-++.|+......+.-+.+-..-.
T Consensus      1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~ 1684 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGS 1684 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34444455667777889999999999999988888888888888899999998888888877765544333333222233


Q ss_pred             hhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH-------HHHHHHHHHHHHHHHHHHh
Q 004063          535 LKLERQLENSQSEISSYKKKISSLEKERQDFQ-------STIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       535 LKleKElE~l~~Er~S~~~q~ssi~kER~~l~-------stIdaLQEEKklLqSKLR~  585 (776)
                      +-++.-+|.|+.|.+.+-.+...-+..=++|+       --|+.++.|+.-|..+|+.
T Consensus      1685 ~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~ 1742 (1758)
T KOG0994|consen 1685 QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVES 1742 (1758)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Confidence            44444555666665555544443333333333       2345566666667777764

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.19  E-value=2.8  Score=52.16  Aligned_cols=59  Identities=19%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhh
Q 004063          666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMA  724 (776)
Q Consensus       666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~  724 (776)
                      ++.+-.-|..+..|...+...|.........|+.+-+.+++|+++.++.|.-..++.-+
T Consensus       544 l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV  602 (1293)
T KOG0996|consen  544 LDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV  602 (1293)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            33344444444446666666666666666667777777777777777766665555443

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.19  E-value=0.021  Score=56.35  Aligned_cols=131  Identities=24%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------------HHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063          457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEI----------------------KVQLVELESFRNEYANVRLECNAADERAK  514 (776)
Q Consensus       457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei----------------------~aQ~~~le~l~aErDaAq~E~n~A~ERaK  514 (776)
                      |..|...||+....+..|+..-..|+.+.                      ..-...+..+..|...++..+..-..|..
T Consensus        19 ~~~li~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~el~~~L~   98 (194)
T PF08614_consen   19 FAELIDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKGELAQQLV   98 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45677777777777777777776666531                      11122334455666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063          515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  587 (776)
Q Consensus       515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as  587 (776)
                      .+-.++..|+.++......--.+++++..+..++.....++....+-=+.|+.++.+||-+..+++.|++++.
T Consensus        99 ~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen   99 ELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666555554444444555555566666666666665555556677777777777777777777653

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.17  E-value=1.8  Score=44.17  Aligned_cols=45  Identities=16%  Similarity=0.208  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ  466 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq  466 (776)
                      ++.|++-||+.-..--.++..|..+..-++.+-.|..+|.++...
T Consensus         3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~   47 (237)
T PF00261_consen    3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL   47 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777777777777777777777777777777777777766543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.15  E-value=1.2  Score=49.01  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhh------------HHHHHHHHHHHH-hHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          519 EVIGLEEKALRLRSNELKLERQLENS------------QSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       519 EVV~LEek~lqLRS~eLKleKElE~l------------~~Er~S~~~q~s-si~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      ++..|+.++.+++.+--.++.++.++            ...+.+++.+.. .+..+...++..++.++++++.++.+|.+
T Consensus       237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~  316 (457)
T TIGR01000       237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQK  316 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444444444444444444444443            233333333332 44555556666666666666666666653


Q ss_pred             ----hccCCCc
Q 004063          586 ----ASGSGKS  592 (776)
Q Consensus       586 ----asa~gKa  592 (776)
                          ++-.|.+
T Consensus       317 ~~I~AP~dG~V  327 (457)
T TIGR01000       317 GVIKAPEDGVL  327 (457)
T ss_pred             CEEECCCCeEE
Confidence                4555554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.07  E-value=1.2  Score=45.18  Aligned_cols=104  Identities=17%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HhHhhhhHHHhhhhHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL---RSNELKLERQLENSQS  546 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL---RS~eLKleKElE~l~~  546 (776)
                      .+..||++|+.++.......-.+..+..|-....--+..|.+....|..++...+.....|   ++.--.+++++..++-
T Consensus        28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~  107 (201)
T PF13851_consen   28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKW  107 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555444444443334444444444444444444444444444444443333322   2222233566666666


Q ss_pred             HHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          547 EISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       547 Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      |-+....++..++.||+.|...++..-
T Consensus       108 e~evL~qr~~kle~ErdeL~~kf~~~i  134 (201)
T PF13851_consen  108 EHEVLEQRFEKLEQERDELYRKFESAI  134 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666766665555443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.06  E-value=1.2  Score=47.93  Aligned_cols=9  Identities=11%  Similarity=0.342  Sum_probs=5.9

Q ss_pred             ccccccCCc
Q 004063          410 QHGFYSTKH  418 (776)
Q Consensus       410 ~~~F~s~~~  418 (776)
                      |.+||+.+.
T Consensus       101 F~EY~~a~~  109 (312)
T smart00787      101 FKEYFSASP  109 (312)
T ss_pred             HHHHHcCCH
Confidence            777776543

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins

Probab=96.02  E-value=0.89  Score=45.93  Aligned_cols=134  Identities=20%  Similarity=0.266  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  506 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  506 (776)
                      |.+++..-..-++.+|..+..+......            +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus        58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~  137 (236)
T cd07651          58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI  137 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3444444444444445444444444432            3334455566777888888888889999999999988888


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH--HHHHH
Q 004063          507 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKKM  578 (776)
Q Consensus       507 n~A~ERaK~-LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ--EEKkl  578 (776)
                      +.+..+... ...|+.-++.++.+....--+++.+.+.+..+...++..+.      ..+....+.||  ||.+.
T Consensus       138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~Ri  206 (236)
T cd07651         138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEERI  206 (236)
T ss_pred             HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence            887776433 34788899999999888888888888888888888888776      44677888888  44443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.01  E-value=0.76  Score=56.15  Aligned_cols=167  Identities=20%  Similarity=0.282  Sum_probs=92.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  496 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~  496 (776)
                      .-.++...+..-|+++-++=-..+|++-..++-..+|.   ..+.+.++.++..+++|+.+++.+.+.++++...++.-.
T Consensus       738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~  814 (1174)
T KOG0933|consen  738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRE  814 (1174)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566666555556666666655555553   356777888888888888888777777777776666666


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHHHHHHHhHhhhhHHHhhhhHH--------------HH
Q 004063          497 NEYANVRLECNAADERAKILASEV--------------IGLEEKALRLRSNELKLERQLENSQS--------------EI  548 (776)
Q Consensus       497 aErDaAq~E~n~A~ERaK~LAaEV--------------V~LEek~lqLRS~eLKleKElE~l~~--------------Er  548 (776)
                      -||.+.++|+.+-..--+.+..+.              ..|+.++...-.+.-|++.++...+.              +.
T Consensus       815 ~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~  894 (1174)
T KOG0933|consen  815 NEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQ  894 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHH
Confidence            666666666655444334444444              44443333333333333333333222              22


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      +.|.++.+..+.+|+.+.-.+++++.|++.+-.+++..
T Consensus       895 e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l  932 (1174)
T KOG0933|consen  895 EKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKL  932 (1174)
T ss_pred             HHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence            23333334444555555555566666655555555543

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.00  E-value=0.31  Score=56.10  Aligned_cols=129  Identities=24%  Similarity=0.286  Sum_probs=69.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHH----------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063          448 ALSESLAAENSSLTDSYNQQRSV----------------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  505 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~----------------------v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  505 (776)
                      +=|-.|.+||..|.-++|-..+.                      |.+-.++..+++.+|..-..+++.++.=|+-+..+
T Consensus        56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~  135 (546)
T KOG0977|consen   56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE  135 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33556667777777776655433                      33334455555555555555555565555555555


Q ss_pred             hhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          506 CNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       506 ~n~A~ERaK-------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      +..|.+..+       .+.+|...+-.++..+....-.+.+|..++..++..+++++..-..-|.+++..+..|-||+
T Consensus       136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel  213 (546)
T KOG0977|consen  136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL  213 (546)
T ss_pred             HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            555555554       44455554444444444444444555555555555555555544445555554444444443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.96  E-value=1.1  Score=47.65  Aligned_cols=72  Identities=18%  Similarity=0.223  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH----HHHHHHHHHHH
Q 004063          513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ----EEKKMMQSKLR  584 (776)
Q Consensus       513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ----EEKklLqSKLR  584 (776)
                      ...+..|+..+..++...|-.--.++.+++.+..++.....+...+..+=.++...++.++    .|...|+.+++
T Consensus       211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~  286 (325)
T PF08317_consen  211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD  286 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            3333444444444444333333333344444444443333333333333333333333222    34455555544

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.96  E-value=0.066  Score=46.43  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      ....+..|+..+.++.+.+.++..++..+..|||.+...+..|-+.+..|.+|+..|..++-..|
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r   67 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR   67 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34678899999999999999999999999999999999999999999999999999999865554

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=95.96  E-value=1.1  Score=56.08  Aligned_cols=95  Identities=16%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      +++..++.+|++|.++.-+|.+=+..-+..++-...   ..+..|-.....+.+++.+++.++.++..-..+++.+..++
T Consensus       230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (1353)
T TIGR02680       230 EQLDEYRDELERLEALERALRNFLQRYRRYARTMLR---RRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDART  306 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888887777777766666653332   33455666666666666666666666666666666666666


Q ss_pred             HHHHHhhhHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILA  517 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LA  517 (776)
                      +.+..+...++++...|.
T Consensus       307 ~~le~~~~~l~~~~~~l~  324 (1353)
T TIGR02680       307 EALEREADALRTRLEALQ  324 (1353)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            666666666666655554

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.89  E-value=1.1  Score=43.31  Aligned_cols=127  Identities=19%  Similarity=0.297  Sum_probs=98.3

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHH
Q 004063          451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE---VIGLEEKA  527 (776)
Q Consensus       451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE---VV~LEek~  527 (776)
                      +.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++..+..|.+.+-....-   +..|..+|
T Consensus         3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri   82 (143)
T PF12718_consen    3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI   82 (143)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence            567778899999999999999999999999999999999999999999999988888887776665543   33455544


Q ss_pred             HHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          528 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       528 lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ..|       +.+|+....-+..+..++.-+...-+++..-+.+|..+..-+..|+-
T Consensus        83 q~L-------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e  132 (143)
T PF12718_consen   83 QLL-------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE  132 (143)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence            433       77777777777777777777777777777777777766666655554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.82  E-value=6.1  Score=47.30  Aligned_cols=122  Identities=22%  Similarity=0.370  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  518 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa  518 (776)
                      |+-.|.+.+......-.||+-|....++.+.....|.-+..+|+.||+-+-..=.-+-.+|       .       .|..
T Consensus        39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy-------s-------elEe  104 (717)
T PF09730_consen   39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY-------S-------ELEE  104 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------H-------HHHH
Confidence            3444555555555555666666665555555555555555555555444333222222222       2       2556


Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH-------HHHhHHHhhh----hHHHHHHHHHHHHHH
Q 004063          519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKK-------KISSLEKERQ----DFQSTIEALQEEKKM  578 (776)
Q Consensus       519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~-------q~ssi~kER~----~l~stIdaLQEEKkl  578 (776)
                      |-|.|++.|--||++++    |.|++++|+.+..-       ++.-+.+-|.    +|.-.+++||.|...
T Consensus       105 ENislQKqvs~Lk~sQv----efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReq  171 (717)
T PF09730_consen  105 ENISLQKQVSVLKQSQV----EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQ  171 (717)
T ss_pred             HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777888888888    45566666665554       4444444343    577788999988754

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK11281 hypothetical protein; Provisional

Probab=95.81  E-value=0.25  Score=60.79  Aligned_cols=49  Identities=14%  Similarity=0.168  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA  517 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA  517 (776)
                      ..+.++..++.+.|+++...-..+......-++||....+|..|...+.
T Consensus       128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~  176 (1113)
T PRK11281        128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR  176 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444445555556666666666655444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.81  E-value=0.92  Score=52.61  Aligned_cols=58  Identities=22%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH-------HHHHHHhHHHHHHHHHh
Q 004063          666 IHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR-------KLEHQTQRLELLTAQNM  723 (776)
Q Consensus       666 IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR-------KLE~qtQRLELltsq~m  723 (776)
                      +++.+++|.|+...-..+-..|....+.|-..|+.+-|+.+       +||...+.|.|..=+.|
T Consensus       448 ~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m  512 (581)
T KOG0995|consen  448 FSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSM  512 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777888888887777878888888888888877777654       46667776666555554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.81  E-value=1.3  Score=54.84  Aligned_cols=149  Identities=20%  Similarity=0.284  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  501 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  501 (776)
                      ..-|+.-||..-.+|+.+.-+++.++..-+.+-.|++.|...-+.-...+.   +.+..|+++-.+-..+...+..|+.-
T Consensus       414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~---e~~~~l~~~t~~~~~e~~~~ekel~~  490 (1293)
T KOG0996|consen  414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD---EILDSLKQETEGIREEIEKLEKELMP  490 (1293)
T ss_pred             HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            344556677777778888888888887777777777777766655443332   22223333333333333344444444


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLE-------EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LE-------ek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      .....+.|..+.+....|..-|.       .++..+...-++++..+++-+.+++++...+.+..-|+.++.+.+..|.
T Consensus       491 ~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~  569 (1293)
T KOG0996|consen  491 LLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR  569 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence            44444444444444444444333       2333344444444444444444444444444444444444444444333

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.81  E-value=9.8  Score=49.58  Aligned_cols=213  Identities=23%  Similarity=0.250  Sum_probs=142.3

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      +..--..||+-||.-    ..++.+|+.+.-||.-....|..|..|...-.-.+..+++....+.-++..|.+++...+.
T Consensus       379 ~~~~~~sLtk~ys~~----~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q  454 (1822)
T KOG4674|consen  379 LIRPGSSLTKLYSKY----SKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQ  454 (1822)
T ss_pred             hcccchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333345566666654    3456666666667777777788888888888888888888888888899999999999999


Q ss_pred             HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccc
Q 004063          533 NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL  612 (776)
Q Consensus       533 ~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDL  612 (776)
                      ...+++++++.++.-+..+.++..       .+..++..|+.++.+|--.|+-+-.+.+.... .+         +|.  
T Consensus       455 ~~~~~e~~~~~l~~~~~~~~renk-------~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~-s~---------~~~--  515 (1822)
T KOG4674|consen  455 KIQKLEKELESLKKQLNDLERENK-------LLEQQISDLSRQVNVLLLELDELRKGSKITVS-SD---------STE--  515 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC-cc---------ccc--
Confidence            999999999999888888888888       45566777777777776666654443333211 00         000  


Q ss_pred             cccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHH----------HHHHHHHHH
Q 004063          613 AITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALI----------SELALEKEE  682 (776)
Q Consensus       613 ai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLi----------sELa~ERer  682 (776)
                            .++                                .+..|+-++|-...||+-|.          .+|+..+|.
T Consensus       516 ------~es--------------------------------~S~~iIse~Lv~F~nI~eLqekN~eLL~~vR~Lae~lE~  557 (1822)
T KOG4674|consen  516 ------NES--------------------------------DSEEIISERLVEFSNINELQEKNVELLNAVRELAEKLEA  557 (1822)
T ss_pred             ------cCc--------------------------------cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  000                                11456666666666666553          333333333


Q ss_pred             HHH-----HHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH-HHHHHHhhhh
Q 004063          683 LVQ-----ALSSELAQSSKLKDLNNELSRKLEHQTQRLE-LLTAQNMANE  726 (776)
Q Consensus       683 avs-----aLa~esr~~~dLk~lN~ELsRKLE~qtQRLE-Lltsq~m~~e  726 (776)
                      ...     -.-+....|..+.+.=++|...|+.+.||++ |++.+.|.++
T Consensus       558 ~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e  607 (1822)
T KOG4674|consen  558 AEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKE  607 (1822)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222     2333445677788888899999999999998 5566667543

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.78  E-value=1.6  Score=44.48  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=38.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hHhhhhHHHhhhhHHHHHHHHHHH-------HhHHHhhhhHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLR-------SNELKLERQLENSQSEISSYKKKI-------SSLEKERQDFQS  567 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLR-------S~eLKleKElE~l~~Er~S~~~q~-------ssi~kER~~l~s  567 (776)
                      ...++..|.+|+..+...+..||+++..+.       ..+-|+....+.+...+..+..++       ..++..=..|+.
T Consensus       125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~  204 (237)
T PF00261_consen  125 LEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEK  204 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555554432       222222222233334444444444       444444444555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 004063          568 TIEALQEEKKMMQSKLR  584 (776)
Q Consensus       568 tIdaLQEEKklLqSKLR  584 (776)
                      .|+.|.+++.-...+.+
T Consensus       205 ~id~le~eL~~~k~~~~  221 (237)
T PF00261_consen  205 EIDRLEDELEKEKEKYK  221 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555544444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF13514 AAA_27: AAA domain

Probab=95.77  E-value=0.8  Score=55.76  Aligned_cols=42  Identities=19%  Similarity=0.218  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHh
Q 004063          672 LISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQ  713 (776)
Q Consensus       672 LisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQ  713 (776)
                      -|..++.++.++.+.++....++.++...-..+..+|+.+.+
T Consensus       453 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  494 (1111)
T PF13514_consen  453 TVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAA  494 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555666666666666666666666655555555555544

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=95.75  E-value=3.7  Score=49.06  Aligned_cols=243  Identities=22%  Similarity=0.247  Sum_probs=118.6

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063          456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--CNAADERAKILASEVIGLEEKALRLRSN  533 (776)
Q Consensus       456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E--~n~A~ERaK~LAaEVV~LEek~lqLRS~  533 (776)
                      +|+.|.+.|-|   .|.+|.+++--+-.|..+-+-...+++.|.+++...  +-+-+|....|.+|=..|-.+.+.- |.
T Consensus       399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~q-s~  474 (961)
T KOG4673|consen  399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQ-SA  474 (961)
T ss_pred             cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HH
Confidence            34455555544   467777777777777777777777788887777654  4456667777777777776665522 22


Q ss_pred             hhhh----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCccccccccccc
Q 004063          534 ELKL----ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTST  609 (776)
Q Consensus       534 eLKl----eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTST  609 (776)
                      .+|-    .|+.+.+.   ...-.++..+.+|-..|...++.--|=-|.++..+.++.+.-+-. -..+..++.+    .
T Consensus       475 iIkKLRAk~ke~etl~---~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq-~~~~~~sr~~----~  546 (961)
T KOG4673|consen  475 IIKKLRAKIKEAETLE---EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQ-KDYYSNSRAL----A  546 (961)
T ss_pred             HHHHHHHHhhhhhHHH---HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHH----H
Confidence            2221    01111111   111123334444444444333332222222222222222211110 0000001111    1


Q ss_pred             ccccccccccccCCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004063          610 EDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSS  689 (776)
Q Consensus       610 dDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~  689 (776)
                      +||.---.+    -+-+.+++          .     ||....-+   +--|.+|..++  .|..-+..=|..|...=..
T Consensus       547 ~~le~~~~a----~qat~d~a----------~-----~Dlqk~nr---lkQdear~~~~--~lvqqv~dLR~~L~~~Eq~  602 (961)
T KOG4673|consen  547 AALEAQALA----EQATNDEA----------R-----SDLQKENR---LKQDEARERES--MLVQQVEDLRQTLSKKEQQ  602 (961)
T ss_pred             HHHHHHHHH----HHHhhhhh----------h-----hhHHHHhh---hhhhHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            111000000    00011111          1     11111111   11344444443  4555555556666666666


Q ss_pred             HHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhhhccccCCCC
Q 004063          690 ELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENISFRQPD  734 (776)
Q Consensus       690 esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~~e~~~a~~~d  734 (776)
                      +-++-+-|+.++-+|.|+|++...|-|-++.+-=+.--++.|+|.
T Consensus       603 aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE  647 (961)
T KOG4673|consen  603 AARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIE  647 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHH
Confidence            777888999999999999999999999888775544444555553

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.75  E-value=0.7  Score=53.35  Aligned_cols=274  Identities=19%  Similarity=0.258  Sum_probs=150.9

Q ss_pred             HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------
Q 004063          423 AALEQHIEDL--------TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------  487 (776)
Q Consensus       423 aaLqqhIeDL--------T~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a-------  487 (776)
                      .+|+.-|+.|        +.=|..+.-.|..++.+.+.-+.+-..+-..+......+++|+..++..++++.+       
T Consensus        66 ~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~  145 (546)
T KOG0977|consen   66 RKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD  145 (546)
T ss_pred             HHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            4566666655        3447778888999999999999999999999999999999999988888665544       


Q ss_pred             HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHH
Q 004063          488 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS  567 (776)
Q Consensus       488 Q~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~s  567 (776)
                      ++..+..+.+|+.-+......-.+-.+.|-+|...|.+.+.++|       ++++....-+..+..+++       .|..
T Consensus       146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r-------~~ld~Etllr~d~~n~~q-------~Lle  211 (546)
T KOG0977|consen  146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR-------KQLDDETLLRVDLQNRVQ-------TLLE  211 (546)
T ss_pred             HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHhHHH-------HHHH
Confidence            44444555555555555555545555555555555555544443       333333333333333333       2233


Q ss_pred             HHHHHH----HHHHHHHHHHHhhccCCCc--cC------CCCCcccccccc-cccccccc-ccccc-------cc-----
Q 004063          568 TIEALQ----EEKKMMQSKLRKASGSGKS--ID------FGKTAASTVNAS-TSTEDLAI-TDTTL-------DN-----  621 (776)
Q Consensus       568 tIdaLQ----EEKklLqSKLR~asa~gKa--~~------~ek~~a~~kDAS-TSTdDLai-~d~~~-------es-----  621 (776)
                      .|+-|+    .|.+.++.+++.-.-++.-  ..      +.+..+.-+..+ +.=+|++. .....       +.     
T Consensus       212 el~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~  291 (546)
T KOG0977|consen  212 ELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ  291 (546)
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence            344444    4555555555542211110  00      000000000001 11111211 00000       00     


Q ss_pred             --CCcccccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004063          622 --SNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKD  699 (776)
Q Consensus       622 --Sn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~  699 (776)
                        ...|+.    ..-..+..++     +.++.      +.--=..+..-|.+|=..|..++..--+.|.+....+.+|++
T Consensus       292 ~~~rEEl~----~~R~~i~~Lr-----~klse------lE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mRe  356 (546)
T KOG0977|consen  292 NYAREELR----RIRSRISGLR-----AKLSE------LESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMRE  356 (546)
T ss_pred             HHHHHHHH----HHHhcccchh-----hhhcc------ccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence              001111    0111121222     11111      110111445567788888889999999999999999999999


Q ss_pred             HhHHHHHHHHHH-----HhHHHHHHHHHhhh
Q 004063          700 LNNELSRKLEHQ-----TQRLELLTAQNMAN  725 (776)
Q Consensus       700 lN~ELsRKLE~q-----tQRLELltsq~m~~  725 (776)
                      +=..|+-+|+.+     +=+.|+..=+.|..
T Consensus       357 ec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLe  387 (546)
T KOG0977|consen  357 ECQQLSVELQKLLDTKISLDAEIAAYRKLLE  387 (546)
T ss_pred             HHHHHHHHHHHhhchHhHHHhHHHHHHHHhc
Confidence            999999988864     45678888888876

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=95.74  E-value=1.1  Score=51.07  Aligned_cols=158  Identities=14%  Similarity=0.227  Sum_probs=101.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR  496 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~  496 (776)
                      +-..++..|++.|.+.-.-=-.|  .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+.
T Consensus       253 ~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~  330 (569)
T PRK04778        253 DIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELK  330 (569)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            34778888888888733111111  3567777788888888888888877777777777788888888877777888888


Q ss_pred             HHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          497 NEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       497 aErDaAq~E~n---~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      .|.+...+.+.   .-.++.+.+..++..|++++..+...--+.....+.+.++......++..+++++..+...|..|.
T Consensus       331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr  410 (569)
T PRK04778        331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR  410 (569)
T ss_pred             HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877732   235566666667776666666443322222333444555555555555555555555555555555


Q ss_pred             HHH
Q 004063          574 EEK  576 (776)
Q Consensus       574 EEK  576 (776)
                      .+-
T Consensus       411 k~E  413 (569)
T PRK04778        411 KDE  413 (569)
T ss_pred             HHH
Confidence            433

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=95.74  E-value=0.69  Score=59.29  Aligned_cols=257  Identities=20%  Similarity=0.226  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063          423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  502 (776)
Q Consensus       423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  502 (776)
                      -.|+|-.++++.+.-.+.-.+...+.=-+++-.++..+...+=.-+..+.+|++.+..++.+-..-.-.++..++|..+-
T Consensus        62 ~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l  141 (1822)
T KOG4674|consen   62 LRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEAL  141 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777666667777777788888878888888888888777755444444445555566666


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH--------------HHHHHHHhHHHh----hhh
Q 004063          503 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS--------------SYKKKISSLEKE----RQD  564 (776)
Q Consensus       503 q~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~--------------S~~~q~ssi~kE----R~~  564 (776)
                      +.+...-.++.+.+-.-+-.||.+..+..+..+-.+..++++..|.+              .+..+|..+..+    =.+
T Consensus       142 ~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~  221 (1822)
T KOG4674|consen  142 ESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQ  221 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            66655555555555555555565555555555555554444444443              333344433333    334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCC
Q 004063          565 FQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLP  644 (776)
Q Consensus       565 l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P  644 (776)
                      |...|..+++++.+++.+..-+...-+-  .+      +-..-...+|--.+++..++-.++              .   
T Consensus       222 L~~~L~~~~~~~~~~q~~~~~l~q~~~e--Ls------~~ie~~~~~ls~~k~t~~s~~~kf--------------~---  276 (1822)
T KOG4674|consen  222 LEEKLSDLKESLAELQEKNKSLKQQNEE--LS------KKIESLNLELSKLKDTAESSEEKF--------------E---  276 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHhhhHHHHHHH--------------H---
Confidence            5555555555555555555422110000  00      000001111111112221111111              1   


Q ss_pred             cccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063          645 ESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE  716 (776)
Q Consensus       645 ~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE  716 (776)
                                  +=..-|-+|-+=-...|.++..+..++.++|....+-++++...++|..-.|++..|-|+
T Consensus       277 ------------~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~  336 (1822)
T KOG4674|consen  277 ------------KELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLS  336 (1822)
T ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                        011223355566667788888899888888888888888888888877666666666554

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.73  E-value=0.63  Score=56.83  Aligned_cols=164  Identities=16%  Similarity=0.236  Sum_probs=98.6

Q ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004063          415 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  494 (776)
Q Consensus       415 s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  494 (776)
                      -+.+......|+..|+.+-+.=-+--+.+++.....+.|--|.++|.+-----...+.++...++-|..++..+.+.+..
T Consensus       782 ~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~  861 (1174)
T KOG0933|consen  782 KANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK  861 (1174)
T ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556666666666655555566667777777777777777777655555566777777777888888888888888


Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  574 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  574 (776)
                      +..+.+.++.+.+.-...-+..--|+-++.-++-...+.--..+-+.+++.+|+.++.+.-....++=..|....+-+-+
T Consensus       862 ~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~  941 (1174)
T KOG0933|consen  862 VEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGD  941 (1174)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhH
Confidence            88888888888777777777766666433333332222222222233344555555544444444443344444444444


Q ss_pred             HHHH
Q 004063          575 EKKM  578 (776)
Q Consensus       575 EKkl  578 (776)
                      ||.+
T Consensus       942 ek~~  945 (1174)
T KOG0933|consen  942 EKRL  945 (1174)
T ss_pred             HHHh
Confidence            4443

>PF13166 AAA_13: AAA domain

Probab=95.73  E-value=1.3  Score=50.65  Aligned_cols=119  Identities=22%  Similarity=0.347  Sum_probs=54.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH-------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          464 YNQQRSVVNQLKSEMEKLQEEIKVQLVE-------------LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  530 (776)
Q Consensus       464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~-------------le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL  530 (776)
                      +.+-...+.+++..++.+.+.+..-...             +..+....+.+...+.+..+....+..+...|..++...
T Consensus       324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~  403 (712)
T PF13166_consen  324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH  403 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555544443211             122233333333444444444555555555565555443


Q ss_pred             HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       531 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      .-..  ...+++.+..++..+.+++..+.++...+...+..++.+.+.|+.++.
T Consensus       404 ~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  455 (712)
T PF13166_consen  404 LIAK--LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK  455 (712)
T ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222  223333444444555555555555555555555555555444444433

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=95.72  E-value=4.1  Score=44.56  Aligned_cols=41  Identities=37%  Similarity=0.528  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004063          423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS  463 (776)
Q Consensus       423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~  463 (776)
                      -.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~   63 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA   63 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777888887788888888888888888888877553

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.68  E-value=1.5  Score=44.22  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=17.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEA  445 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~  445 (776)
                      .+..++..|.++-.++-.|++.++.
T Consensus        21 ~L~~~~~~l~~~~~~~~~l~~~i~~   45 (302)
T PF10186_consen   21 RLLELRSELQQLKEENEELRRRIEE   45 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777777776665554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=95.62  E-value=1.3  Score=44.49  Aligned_cols=9  Identities=22%  Similarity=0.102  Sum_probs=3.8

Q ss_pred             cccccccch
Q 004063          651 LEGLAVNIP  659 (776)
Q Consensus       651 f~~~~~~Ip  659 (776)
                      +.|+...|+
T Consensus       225 ~~gs~s~i~  233 (302)
T PF10186_consen  225 PSGSRSTII  233 (302)
T ss_pred             cCccccchh
Confidence            344444444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=95.61  E-value=1.5  Score=45.45  Aligned_cols=115  Identities=23%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  500 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  500 (776)
                      -+..|+|+|.|+-.+       |.+++.-+.++-+.--.+-++||+....+..++..-+          .+|..=..+.+
T Consensus        25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~----------~Al~~g~E~LA   87 (225)
T COG1842          25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAE----------LALQAGNEDLA   87 (225)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence            348999999998655       5555444444444555566677765555544443321          11111112222


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                            .+|-++-+.|...+..++..+.+++....|+++.+..+...+..++.+...+
T Consensus        88 ------r~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l  139 (225)
T COG1842          88 ------REALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEAL  139 (225)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  3455566666666666666666676666666776666666666666665533

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=95.52  E-value=1.1  Score=45.66  Aligned_cols=165  Identities=19%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  493 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l----~EsLa-~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  493 (776)
                      ..+-+.|++.|++...+--.+++.|++-..-    .+.++ .--+.|..+.++.-..+.+++..+-.+..++..+....+
T Consensus        37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~  116 (240)
T PF12795_consen   37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE  116 (240)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence            3455677788888888777777777765432    11111 012467777888888888888888888888888888888


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          494 SFRNEYANVRLECNAADERAKILASE--VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       494 ~l~aErDaAq~E~n~A~ERaK~LAaE--VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      .+......++....+++.+...+...  ...-+.+...|....--+.-++.-+..|..+......++...|+-+...++.
T Consensus       117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~  196 (240)
T PF12795_consen  117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888777777776653000  1111222222222222223333334444444444455555555555555666


Q ss_pred             HHHHHHHHHHHH
Q 004063          572 LQEEKKMMQSKL  583 (776)
Q Consensus       572 LQEEKklLqSKL  583 (776)
                      ++.+...||..|
T Consensus       197 l~~~l~~Lq~~l  208 (240)
T PF12795_consen  197 LQQQLQALQNLL  208 (240)
T ss_pred             HHHHHHHHHHHH
Confidence            665555555443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.51  E-value=2.6  Score=50.55  Aligned_cols=55  Identities=24%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  502 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  502 (776)
                      .=++-|-+++++|.-++=.--..+++.+..++.+++|..-+..+++-++..+|..
T Consensus       336 ~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~  390 (775)
T PF10174_consen  336 QEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK  390 (775)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444443334444444444444444444434444443333333

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=95.51  E-value=4.4  Score=49.13  Aligned_cols=150  Identities=27%  Similarity=0.336  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063          426 EQHIEDLTQEKFALQRSLEASRALSESLAAENS-----SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  500 (776)
Q Consensus       426 qqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENs-----aLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  500 (776)
                      |.-|.||-.||++|+-.|---+-+.++.-.|-+     .+|+.|   +-.|..|.+++.+++.+|..-...+-.+..|..
T Consensus        47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriy---Rrdv~llEddlk~~~sQiriLQn~c~~lE~ekq  123 (1265)
T KOG0976|consen   47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIY---RRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQ  123 (1265)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999776555556666555543     245555   346677777777777777666666666666666


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH----HHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          501 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~----~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      +.|--...+.++.|.-.-|++.+-.++-       |++++|..-.+||-+.    ..+-..|..-+-+++..+..--+|+
T Consensus       124 ~lQ~ti~~~q~d~ke~etelE~~~srlh-------~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en  196 (1265)
T KOG0976|consen  124 KLQDTIQGAQDDKKENEIEIENLNSRLH-------KLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREK  196 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHH
Confidence            6666666666666655555554444333       2344444433443322    2222333444444555555555566


Q ss_pred             HHHHHHHHh
Q 004063          577 KMMQSKLRK  585 (776)
Q Consensus       577 klLqSKLR~  585 (776)
                      +.+.-|+.+
T Consensus       197 ~~le~k~~k  205 (1265)
T KOG0976|consen  197 KALEEKLEK  205 (1265)
T ss_pred             HHHHHHHHH
Confidence            666555554

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.48  E-value=1  Score=48.90  Aligned_cols=163  Identities=20%  Similarity=0.291  Sum_probs=95.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH--
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR--  496 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~--  496 (776)
                      -.|+.|+-.++++       -.|.|+=+-+|-+.|-..|..|+.++..-...++...+.|.+|+-|+..----|--+.  
T Consensus        61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~  133 (306)
T PF04849_consen   61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSND  133 (306)
T ss_pred             hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence            3566666666665       4688999999999999999999999999999999999999999888654333322222  


Q ss_pred             HHHHHHHHhh-------------------hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHH-----------hhhhHH
Q 004063          497 NEYANVRLEC-------------------NAADERAKILASEVIGLEEKALRLRSNELKLERQ-----------LENSQS  546 (776)
Q Consensus       497 aErDaAq~E~-------------------n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKE-----------lE~l~~  546 (776)
                      .|-....-.+                   ..-.++.|.|..|-..|.+++.+|+......+.+           +..++.
T Consensus       134 ~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~  213 (306)
T PF04849_consen  134 DEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQ  213 (306)
T ss_pred             hhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcch
Confidence            1111111111                   2334455555555555555555555333322222           222222


Q ss_pred             HHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          547 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       547 Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      .+..+..++..-.-|=...+.+|-.|+.+.-.||.|+++...
T Consensus       214 qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~  255 (306)
T PF04849_consen  214 QIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAA  255 (306)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222222222222222234456777777777888888886543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.48  E-value=0.84  Score=50.13  Aligned_cols=34  Identities=18%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA  454 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa  454 (776)
                      ....+.+.|.++.++...++..+...++..+.|-
T Consensus       198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~  231 (498)
T TIGR03007       198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK  231 (498)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777666666555544443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.37  E-value=0.0043  Score=71.51  Aligned_cols=55  Identities=31%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063          667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  721 (776)
Q Consensus       667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq  721 (776)
                      .....+|.+|+.|+..+..-+.........++..+..|.|++-..+.-.+.+-++
T Consensus       367 ~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~  421 (722)
T PF05557_consen  367 RELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQ  421 (722)
T ss_dssp             -------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556777777777766666666666666666666665555555555555444

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.35  E-value=0.78  Score=47.60  Aligned_cols=108  Identities=24%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063          471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  550 (776)
Q Consensus       471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S  550 (776)
                      |.++++++++.++++..+.-...-|..+       +..|.+-+..|+.+...+++...+|+..-.+..++-+.|..++..
T Consensus        14 L~q~eee~~~a~~~L~e~e~~a~~Leek-------~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e   86 (246)
T PF00769_consen   14 LRQMEEEMRRAQEALEESEETAEELEEK-------LKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE   86 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544443333332223222       344555556777777778888888887777777777777777777


Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      +..++..+..++..-..+.+.||.+...++..+++
T Consensus        87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~  121 (246)
T PF00769_consen   87 AEAEIARLEEESERKEEEAEELQEELEEAREDEEE  121 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777777777777666666554

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.35  E-value=4.2  Score=48.92  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063          450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  529 (776)
Q Consensus       450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq  529 (776)
                      -..|.++.++++..++....-+.-||..+...+++..--...++.|+.+++.+...|++++.+.-.++.|.-.+..++..
T Consensus       303 ~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~  382 (775)
T PF10174_consen  303 LEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED  382 (775)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHH
Q 004063          530 LRSNELKLERQLENSQSEISSYK  552 (776)
Q Consensus       530 LRS~eLKleKElE~l~~Er~S~~  552 (776)
                      +|...=+.+.++..++..++.+.
T Consensus       383 l~d~~d~~e~ki~~Lq~kie~Le  405 (775)
T PF10174_consen  383 LRDMLDKKERKINVLQKKIENLE  405 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666666665555544443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.28  E-value=1.8  Score=47.13  Aligned_cols=151  Identities=17%  Similarity=0.246  Sum_probs=87.1

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004063          414 YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE  493 (776)
Q Consensus       414 ~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le  493 (776)
                      .+......+.+||+-|.+|-+|-..|--...+-..-+.++-..-..|+...   ..++......|..|.+|+.-..-...
T Consensus       154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~  230 (306)
T PF04849_consen  154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENR  230 (306)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHH
Confidence            344455678899999999888888776655554444444444444444322   11222223344444444444444444


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ....|....+.+..+...|.|.++.|.+.|...+...+-.+-.+       ..|+.-++.+|.       ++...+...|
T Consensus       231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L-------~aEL~elqdkY~-------E~~~mL~EaQ  296 (306)
T PF04849_consen  231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQL-------QAELQELQDKYA-------ECMAMLHEAQ  296 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------HHHHHHHHHH
Confidence            44555555555556666777777777777766555554444444       344444445555       5667788888


Q ss_pred             HHHHHHHH
Q 004063          574 EEKKMMQS  581 (776)
Q Consensus       574 EEKklLqS  581 (776)
                      ||.|.+.+
T Consensus       297 EElk~lR~  304 (306)
T PF04849_consen  297 EELKTLRK  304 (306)
T ss_pred             HHHHHhhC
Confidence            88887654

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=95.14  E-value=5.7  Score=45.29  Aligned_cols=147  Identities=22%  Similarity=0.263  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH-------H
Q 004063          440 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE-------R  512 (776)
Q Consensus       440 qR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~E-------R  512 (776)
                      ...|+..+..-+....|-..|.....-....+...|.++.++++....--..+.+|..|...++.++..+.+       -
T Consensus       287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~  366 (522)
T PF05701_consen  287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA  366 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence            344556666666666666666666666667777777777777776666666666666666666666654433       3


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      .-.|...+..|..++.++|...-.++.++.+++.|+..++..+..++..=..++..+++-..--..+...++.+
T Consensus       367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l  440 (522)
T PF05701_consen  367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL  440 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34466666666666666666666666677777777777777777666665666666666665555666666643

Several sequences in this family are described as being myosin heavy chain-like.

>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins

Probab=95.14  E-value=3.3  Score=42.28  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  506 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  506 (776)
                      .|..++..-..-++.+|.-+..|..+.+.....+           ..+...|+.++...+.+...|.-.+.-|.++-.+.
T Consensus        57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~  136 (239)
T cd07647          57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK  136 (239)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555556666666666665555543333           34445666666666667777777777777777666


Q ss_pred             hHHHHHHHHH-----HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          507 NAADERAKIL-----ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       507 n~A~ERaK~L-----AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ..|.......     ..|+.-++.++.+.+..--++..+-.....+...++.++.      ..+....+.+|
T Consensus       137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~------~~~~~~~~~~Q  202 (239)
T cd07647         137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWE------SEHATACQVFQ  202 (239)
T ss_pred             HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            6665332222     3577788888887777777777776666666666666665      34556777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=95.06  E-value=8  Score=43.88  Aligned_cols=61  Identities=13%  Similarity=0.023  Sum_probs=42.7

Q ss_pred             HHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          524 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       524 Eek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      .++++.+++.+..-++.+..+..|+..+.+++..-.+.++.=..++-+...+++-+..+++
T Consensus       184 q~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         184 QAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3455556666666677777788888888888887777777666666666666666666666

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.02  E-value=2.5  Score=51.90  Aligned_cols=177  Identities=24%  Similarity=0.344  Sum_probs=92.4

Q ss_pred             cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 004063          409 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ  467 (776)
Q Consensus       409 ~~~~F~s~~~~~~faaL-------------------qqhIe--DLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ  467 (776)
                      +.--|...++-.+||.|                   ++|++  ||-++--+|++.+....+--+.|-+++++|....+.-
T Consensus       142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~  221 (1072)
T KOG0979|consen  142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV  221 (1072)
T ss_pred             chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45569999999999965                   45554  5566667788888877777777777777776555543


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh------------
Q 004063          468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL------------  535 (776)
Q Consensus       468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL------------  535 (776)
                      ... ...++.+|.|+.-  --.+..+....||.+..+....|.+..+.|-.++..++.+.-.|++..=            
T Consensus       222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~  298 (1072)
T KOG0979|consen  222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRE  298 (1072)
T ss_pred             HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHH
Confidence            322 1233333333210  1112233345555555555555555555555555444444444433110            


Q ss_pred             ------hhHHHh---hhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          536 ------KLERQL---ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       536 ------KleKEl---E~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                            |...-.   .....++.....+++.+.+.+.+.+..|..+.+..-.+|..|.++..
T Consensus       299 ~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~~~~  360 (1072)
T KOG0979|consen  299 LNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQETED  360 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence                  111111   11333444445555555555555555555555555555555554433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.00  E-value=5.2  Score=41.45  Aligned_cols=242  Identities=21%  Similarity=0.266  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004063          423 AALEQHIEDLTQE--------KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES  494 (776)
Q Consensus       423 aaLqqhIeDLT~E--------KfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~  494 (776)
                      ..|+..|..+..-        +-.|.+.|...+...+.++.|+..|.-..+.....+..++...+.....+..-...+..
T Consensus        28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~  107 (312)
T PF00038_consen   28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELES  107 (312)
T ss_dssp             HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3456666666554        45578888888888888888888887777777777777777777776666666666666


Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHhH-------hhh------hHHHhh-----------hhHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLE----EKALRLRSN-------ELK------LERQLE-----------NSQS  546 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LE----ek~lqLRS~-------eLK------leKElE-----------~l~~  546 (776)
                      ++.+.+.+-....+...+...|..|+.-|.    +++..||..       +++      +..-|.           ..+.
T Consensus       108 lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~  187 (312)
T PF00038_consen  108 LRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNRE  187 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhh
Confidence            666666666666666666666665554432    233333321       111      011111           1222


Q ss_pred             HH-HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcc
Q 004063          547 EI-SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD  625 (776)
Q Consensus       547 Er-~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E  625 (776)
                      +. ..|..++..+......-...+..+++|.+.+..++..+..  +..                 .|   ....    ..
T Consensus       188 e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~--el~-----------------~l---~~~~----~~  241 (312)
T PF00038_consen  188 ELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQA--ELE-----------------SL---RAKN----AS  241 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH-----------------HH---HHHH----HH
T ss_pred             hhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhh--hhh-----------------cc---ccch----hh
Confidence            22 2344566666666666677888888888888887764332  110                 00   0000    00


Q ss_pred             cccccCCcccCCCCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 004063          626 THDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELS  705 (776)
Q Consensus       626 ~~~~as~qe~~vs~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELs  705 (776)
                      +       +..+                  ..+-..--..++.....|..|+.|...+...+..-.+.+.+|-+.+--|.
T Consensus       242 L-------e~~l------------------~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld  296 (312)
T PF00038_consen  242 L-------ERQL------------------RELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALD  296 (312)
T ss_dssp             H-------HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-------hhhH------------------HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            0       0000                  00001111344556666777777777777777777777777777776666


Q ss_pred             HHHHHHHhHH
Q 004063          706 RKLEHQTQRL  715 (776)
Q Consensus       706 RKLE~qtQRL  715 (776)
                      .++..-..=|
T Consensus       297 ~EIatYR~LL  306 (312)
T PF00038_consen  297 AEIATYRKLL  306 (312)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6555444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.94  E-value=6.2  Score=46.16  Aligned_cols=158  Identities=23%  Similarity=0.313  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063          429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL---KSEMEKLQEEIKVQLVELESFRNEYANVRLE  505 (776)
Q Consensus       429 IeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qL---k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  505 (776)
                      |+.+..+.-.|.-.+.+..+-.+....++..+-..|--..-.+.=|   ..-|++|+.-+++-...+..|..+|+.++..
T Consensus       344 i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~p  423 (594)
T PF05667_consen  344 IEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAP  423 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3333344444444444444444445555555555544333332222   3456777777777777788888888777765


Q ss_pred             hhHHHHHHH------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH--HHHHHHHHHH----hHHHh
Q 004063          506 CNAADERAK------------------ILASEVIGLEEKALRLRSNELKLERQLENSQS--EISSYKKKIS----SLEKE  561 (776)
Q Consensus       506 ~n~A~ERaK------------------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~--Er~S~~~q~s----si~kE  561 (776)
                      +-+--++.+                  .+-.++..+++++..---..=++.++++++..  -|..|.+.+-    -|.|-
T Consensus       424 L~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQ  503 (594)
T PF05667_consen  424 LIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQ  503 (594)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHH
Confidence            554444433                  22333333333333221111133344444322  2445555443    33445


Q ss_pred             hhhHHHH---HHHHHHHHHHHHHHHHhh
Q 004063          562 RQDFQST---IEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       562 R~~l~st---IdaLQEEKklLqSKLR~a  586 (776)
                      +.++.+.   ...||.|...++-||.++
T Consensus       504 k~eI~KIl~DTr~lQkeiN~l~gkL~Rt  531 (594)
T PF05667_consen  504 KEEIEKILSDTRELQKEINSLTGKLDRT  531 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            5554444   356788888888888853

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.87  E-value=5.4  Score=44.02  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=17.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILASEVIGLEEKAL  528 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l  528 (776)
                      ..++..+...+..---+.+.+.+++..|+.++.
T Consensus       260 ~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~  292 (498)
T TIGR03007       260 EKQLDALRLRYTDKHPDVIATKREIAQLEEQKE  292 (498)
T ss_pred             HHHHHHHHHHhcccChHHHHHHHHHHHHHHHHH
Confidence            444444444444444555666666666666543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

Probab=94.86  E-value=4.4  Score=42.05  Aligned_cols=130  Identities=15%  Similarity=0.207  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~--------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      .|..++..-..=++.+|..+..|.++...+-.                    ....+...++.+|..+..+...|+..+.
T Consensus        61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk  140 (258)
T cd07655          61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK  140 (258)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45555555555666666666666666554422                    2334455566666666677777888888


Q ss_pred             HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063          498 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  570 (776)
Q Consensus       498 ErDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId  570 (776)
                      -|+.+=.+...|..+....       ..|+.-++.++.+....--+++++-.........+...|.      ..+-.+++
T Consensus       141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~------~~m~~~~~  214 (258)
T cd07655         141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYM------EDMEQVFD  214 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------HHHHHHHH
Confidence            8888877777777665432       3677777777777766666666665555555555444444      34667888


Q ss_pred             HHH
Q 004063          571 ALQ  573 (776)
Q Consensus       571 aLQ  573 (776)
                      .||
T Consensus       215 ~~Q  217 (258)
T cd07655         215 KCQ  217 (258)
T ss_pred             HHH
Confidence            888

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=94.83  E-value=5.9  Score=44.87  Aligned_cols=36  Identities=36%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 004063          422 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAEN  457 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L-~~s~~l~EsLa~EN  457 (776)
                      ...+++-|+|+...+-.|+-.. ++.+.|++.|++-+
T Consensus        89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~  125 (420)
T COG4942          89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ  125 (420)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555444444444 55556666666543

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=94.74  E-value=9.1  Score=46.67  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=38.6

Q ss_pred             chhhHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHhhh
Q 004063          658 IPHDQMRMIHNINALISELALEK------EELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMAN  725 (776)
Q Consensus       658 Ip~DQlR~IdsInaLisELa~ER------eravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m~~  725 (776)
                      -.+.+-.||+-|++|++.|+-.|      +.+-.++.-+-.+|..|++         |.|+-+|++--+.+.+-
T Consensus       457 aIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkE---------eiQethldyR~els~lA  521 (1265)
T KOG0976|consen  457 AIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKE---------EIQETHLDYRSELSELA  521 (1265)
T ss_pred             HHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHh
Confidence            45788899999999999887655      4444555555556666654         34555666655555443

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=94.71  E-value=1.8  Score=42.03  Aligned_cols=30  Identities=23%  Similarity=0.422  Sum_probs=12.3

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q 004063          453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQ  482 (776)
Q Consensus       453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq  482 (776)
                      |..|-+.+-++.+.....+..++++...++
T Consensus        93 l~~el~~l~~~~~~~~~~l~~~~~~~~~~~  122 (191)
T PF04156_consen   93 LQEELDQLQERIQELESELEKLKEDLQELR  122 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            333333344444444444444444443333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.68  E-value=4.4  Score=44.00  Aligned_cols=102  Identities=18%  Similarity=0.284  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          420 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKf-------aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      ..+.-||+.+|-|..||-       +|.-+|++++.-++.--.|-.+|-+----.....+.|.....+|..++++-..-+
T Consensus        18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv   97 (307)
T PF10481_consen   18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV   97 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence            456778888888988874       4566777777777666555555554433333344445555555555554444444


Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 004063          493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKAL  528 (776)
Q Consensus       493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~l  528 (776)
                      .-+-.-.       +.+..+...|..|+-.+..++-
T Consensus        98 ~~lEgQl-------~s~Kkqie~Leqelkr~KsELE  126 (307)
T PF10481_consen   98 NFLEGQL-------NSCKKQIEKLEQELKRCKSELE  126 (307)
T ss_pred             HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333322       3333444455555554444444

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.65  E-value=7  Score=45.74  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHH
Q 004063          544 SQSEISSYKKKISSLEKERQDFQS  567 (776)
Q Consensus       544 l~~Er~S~~~q~ssi~kER~~l~s  567 (776)
                      .+.|+..+.+.+--|.++++.+.+
T Consensus       337 mn~Er~~l~r~l~~i~~~~d~l~k  360 (581)
T KOG0995|consen  337 MNLERNKLKRELNKIQSELDRLSK  360 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.63  E-value=3  Score=42.76  Aligned_cols=63  Identities=19%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  501 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  501 (776)
                      ..+.=.++++-.+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus        33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~   95 (251)
T PF11932_consen   33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ   95 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344446677788889999999999999988899999999988888888888888877665554

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.62  E-value=5.3  Score=46.71  Aligned_cols=91  Identities=27%  Similarity=0.305  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHhh
Q 004063          430 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR---NEYANVRLEC  506 (776)
Q Consensus       430 eDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~---aErDaAq~E~  506 (776)
                      ++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-..+-+.   .=..-.+.-|
T Consensus       324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v  403 (594)
T PF05667_consen  324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV  403 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3334445555666666666677777777777777777777777777777777777665544433332   1112222334


Q ss_pred             hHHHHHHHHHHHHH
Q 004063          507 NAADERAKILASEV  520 (776)
Q Consensus       507 n~A~ERaK~LAaEV  520 (776)
                      .+..+|...|+.+-
T Consensus       404 ~~s~~rl~~L~~qW  417 (594)
T PF05667_consen  404 EASEQRLVELAQQW  417 (594)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445555555443

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=94.56  E-value=2.1  Score=45.50  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      ..+.-++++++++++++..-..+|..|+.+..-.-.  +.....+....|..+...++.++..+|+
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~  235 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRS  235 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566666777777766666666666665433221  2234455666677777777777766664

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.54  E-value=4.6  Score=44.13  Aligned_cols=68  Identities=21%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH-hhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK-ERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k-ER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      .|..|..+|.+|+......+.+++.++.|.=-.+..+..=.. -=.-|++-++.|-.||+.||.+|-+.
T Consensus       136 ~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~  204 (310)
T PF09755_consen  136 LVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQP  204 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            355566666666555555556666665554444444331100 00123455556667888888887653

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=94.49  E-value=14  Score=46.72  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=22.7

Q ss_pred             HHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063          695 SKLKDLNNELSRKLEHQTQRLELLTAQNM  723 (776)
Q Consensus       695 ~dLk~lN~ELsRKLE~qtQRLELltsq~m  723 (776)
                      +++.++++.+-++|.+.++++|..-+|--
T Consensus       789 ~~~Ekq~~~~~~~l~~~K~~~e~~~~q~~  817 (1317)
T KOG0612|consen  789 KMLEKQLKKLLDELAELKKQLEEENAQLR  817 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66788888888888888888887666543

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=94.47  E-value=8  Score=43.47  Aligned_cols=68  Identities=19%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063          437 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  504 (776)
Q Consensus       437 faLqR~L~-~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  504 (776)
                      .+|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-.......+..+-|-.-.
T Consensus       106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~  174 (561)
T KOG1103|consen  106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEM  174 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444443 578889999999988877776667788899999999999998777666655444444333

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.43  E-value=14  Score=43.68  Aligned_cols=121  Identities=26%  Similarity=0.392  Sum_probs=78.0

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHHhhhHHHHHHHHH
Q 004063          451 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL  516 (776)
Q Consensus       451 EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--------------~aErDaAq~E~n~A~ERaK~L  516 (776)
                      |+|-.|-.+=-.-||++   |-.|+-++.|+++++.--..+++.+              ..+|-..+-|+-+-..|-..|
T Consensus        92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl  168 (772)
T KOG0999|consen   92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL  168 (772)
T ss_pred             HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666666777765   3445555555555555444444433              456666667777777777666


Q ss_pred             HHHH-------HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh-----h------hhHHHHHHHHHHHHHH
Q 004063          517 ASEV-------IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE-----R------QDFQSTIEALQEEKKM  578 (776)
Q Consensus       517 AaEV-------V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE-----R------~~l~stIdaLQEEKkl  578 (776)
                      -+|-       |.|+..+-.||.+++    |-|++++|+.++.-++..+-.-     |      .+|.-.++.||.|...
T Consensus       169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReq  244 (772)
T KOG0999|consen  169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQ  244 (772)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            6555       455556777888887    6789999999998887765332     2      2345567777776643

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=94.42  E-value=3.4  Score=47.59  Aligned_cols=42  Identities=26%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004063          665 MIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSR  706 (776)
Q Consensus       665 ~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsR  706 (776)
                      -|++.+.+|.||--+=+-+-..|..+.+.|-.+|+.|.+.-+
T Consensus       488 ~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~  529 (622)
T COG5185         488 DIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELV  529 (622)
T ss_pred             HhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            356778888888888888888888888888888877765544

>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

Probab=94.39  E-value=3.9  Score=42.53  Aligned_cols=120  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH-----HHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI-----LASEVIG  522 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~-----LAaEVV~  522 (776)
                      .|++.|-.+-..|..=.+.|......+...|+++|.-...+...|+.-+..|.++-.+...|......     -..|+.-
T Consensus        78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK  157 (242)
T cd07671          78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEK  157 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence            46666766666677777888889999999999999999999999999999999888888777543221     2357778


Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ++.++.+.+.+--+++++-+....+...++..+.      ..+....+.+|
T Consensus       158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~------~~~~~~~~~~Q  202 (242)
T cd07671         158 SQNKAKQCRDAATEAERVYKQNIEQLDKARTEWE------TEHILTCEVFQ  202 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence            8888887777777777777766666666666666      33556667777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.33  E-value=8.3  Score=45.38  Aligned_cols=107  Identities=21%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh
Q 004063          478 MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS  557 (776)
Q Consensus       478 mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss  557 (776)
                      +-.|+.|++.-+.+|+..++|.++.-....+-.+-...+..+...|-.++..++--|-++-.+-..|.+|-=++.++++.
T Consensus       109 I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~  188 (772)
T KOG0999|consen  109 ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSN  188 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44455556655666666666666665555555555555666666666666555555555555555666666666666665


Q ss_pred             HHH---hhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          558 LEK---ERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       558 i~k---ER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +-.   |=..+.-+|.+|-||..+|-+.+-
T Consensus       189 LR~sQVEyEglkheikRleEe~elln~q~e  218 (772)
T KOG0999|consen  189 LRQSQVEYEGLKHEIKRLEEETELLNSQLE  218 (772)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            521   122345567888888888876554

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.32  E-value=7.5  Score=46.41  Aligned_cols=110  Identities=23%  Similarity=0.292  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh----------hhhHHHhhhh
Q 004063          475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS  544 (776)
Q Consensus       475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e----------LKleKElE~l  544 (776)
                      .+-+-.++.++..|-.++..+..+.++..-+++.-..|++..+.++..++++..++ +.+          |.+.-|++.+
T Consensus       164 dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~-~~~~qq~a~~~~ql~~~~ele~i  242 (716)
T KOG4593|consen  164 DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEER-ADHEQQNAELEQQLSLSEELEAI  242 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhhhHHHHH
Confidence            33344445555555555555555555555555555555555555555555544422 111          1122233332


Q ss_pred             HHHHHHHHHHHHhHH-------Hhhh---hHHHHHHHHHHHHHHHHHHHHh
Q 004063          545 QSEISSYKKKISSLE-------KERQ---DFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       545 ~~Er~S~~~q~ssi~-------kER~---~l~stIdaLQEEKklLqSKLR~  585 (776)
                      ...+..+..++.-+.       .|=-   +..-++.-||||++.||+||+.
T Consensus       243 ~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~  293 (716)
T KOG4593|consen  243 NKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR  293 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            222222222211111       1111   2234677899999999999985

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.30  E-value=0.042  Score=63.63  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      +++......+.|..++..|+.++.++...-.+++..++.+...+.+++++..++.+||+-|...|+..-.|-
T Consensus       358 k~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  358 KLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333444444445555555555555555555555666667777778888888888888888888777766554

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=94.23  E-value=0.013  Score=67.72  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063          501 NVRLECNAADERAKILASEVIGLEEKALR  529 (776)
Q Consensus       501 aAq~E~n~A~ERaK~LAaEVV~LEek~lq  529 (776)
                      -.+.....-.++++.|-...+.||+++.+
T Consensus       329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~  357 (713)
T PF05622_consen  329 DLKRQVKELEEDNAVLLETKAMLEEELKK  357 (713)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555555555555555543

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.13  E-value=10  Score=46.49  Aligned_cols=60  Identities=25%  Similarity=0.269  Sum_probs=36.8

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH--HhHHH-----HHHhHHHHHHH-----HHHHhHHHHHHHHHhhh
Q 004063          666 IHNINALISELALEKEELVQALSSELA--QSSKL-----KDLNNELSRKL-----EHQTQRLELLTAQNMAN  725 (776)
Q Consensus       666 IdsInaLisELa~EReravsaLa~esr--~~~dL-----k~lN~ELsRKL-----E~qtQRLELltsq~m~~  725 (776)
                      -|+|.+||-.+.+|=.+.+..|.++-.  ..+.+     --.|+.+..+|     ..++.-|+-++=+.||.
T Consensus       684 ~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~~lq~~~~~~eel~~~~~di~~e~l~~lld~ema~  755 (980)
T KOG0980|consen  684 SDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQYLQTLNQLGEELLPKELDIDQELLGNLLDIEMAE  755 (980)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHhHHhccccchhhHHHHHHHHHHHHHH
Confidence            578899999999998888888876532  22222     12234444444     34444445466666754

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=94.10  E-value=3.2  Score=51.20  Aligned_cols=135  Identities=29%  Similarity=0.320  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhhhHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          443 LEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       443 L~~s~~l~EsLa~ENsaL-------t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      +....+..++|..|-+++       ++.|+-|-..-..|+.+.++|+..++-...+++.+..|+.-++..+.+..+=.  
T Consensus       443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii--  520 (1041)
T KOG0243|consen  443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII--  520 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            333444455555555544       44444444455599999999999999999999999999988777655544322  


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                        .....+|.++.+.   ..++++.++....++.++.+++....+.=+.=+..++.++.+....-+-+-
T Consensus       521 --~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~  584 (1041)
T KOG0243|consen  521 --SQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLH  584 (1041)
T ss_pred             --HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHH
Confidence              2233444444433   677788888888888888888887777777777777777766654444333

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=94.09  E-value=5.7  Score=43.92  Aligned_cols=53  Identities=21%  Similarity=0.384  Sum_probs=35.5

Q ss_pred             hhHHHhhhhHHHHHHHHHHHHhH--------------------HHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          536 KLERQLENSQSEISSYKKKISSL--------------------EKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       536 KleKElE~l~~Er~S~~~q~ssi--------------------~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      .++.++..++.++..++.++..+                    ...+..+...++.++.++..++.+|..+..
T Consensus       240 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~  312 (457)
T TIGR01000       240 TIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE  312 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555433                    234557888999999999999999986544

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF13514 AAA_27: AAA domain

Probab=94.03  E-value=20  Score=44.14  Aligned_cols=48  Identities=19%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063          546 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI  593 (776)
Q Consensus       546 ~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~  593 (776)
                      ..+.++.++...+++.+..+...++.+.++...++.+++.+...|.++
T Consensus       452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  499 (1111)
T PF13514_consen  452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVP  499 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            568888888888999999999999999999999999999988888775

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=94.00  E-value=0.015  Score=68.95  Aligned_cols=122  Identities=20%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      .|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.........|..+...+.+++..++
T Consensus       353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le  432 (859)
T PF01576_consen  353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE  432 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            35555555555555555666666666666666666666777778888888888888887777777777777777777665


Q ss_pred             hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          532 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      -..-.+..++..+..-.+...+.+..+++.+-.|...++-|+
T Consensus       433 re~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~  474 (859)
T PF01576_consen  433 RENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQ  474 (859)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence            554444555555444444433333333333333333333333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=93.94  E-value=7.8  Score=39.15  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQR------------SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  505 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~------------~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  505 (776)
                      ++..+...-..-++.+|..+..+.+.++.+-            .....+..++++++.++......++..+.-|+.+-.+
T Consensus        62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke  141 (251)
T cd07653          62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE  141 (251)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666656666667777777777666332            2233344455555555566666666666666666555


Q ss_pred             hhHHHHHH
Q 004063          506 CNAADERA  513 (776)
Q Consensus       506 ~n~A~ERa  513 (776)
                      ...|....
T Consensus       142 ~~~a~~k~  149 (251)
T cd07653         142 AEKAKQKY  149 (251)
T ss_pred             HHHHHHHH
Confidence            55555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=93.94  E-value=5.7  Score=37.47  Aligned_cols=34  Identities=29%  Similarity=0.585  Sum_probs=22.1

Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          551 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       551 ~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ...+-..+.++...+..-++-|.+.=++|+..|-
T Consensus        96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333444555555667777777788888887765

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=93.84  E-value=1.9  Score=45.47  Aligned_cols=27  Identities=15%  Similarity=0.124  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063          566 QSTIEALQEEKKMMQSKLRK----ASGSGKS  592 (776)
Q Consensus       566 ~stIdaLQEEKklLqSKLR~----asa~gKa  592 (776)
                      +..+.+++.+++.++..|.+    ++-.|.+
T Consensus       189 ~a~~~~~~a~l~~a~~~l~~~~I~AP~dG~V  219 (346)
T PRK10476        189 VAQRAAREAALAIAELHLEDTTVRAPFDGRV  219 (346)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCEEECCCCcEE
Confidence            34455556666666666653    4555554

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=93.79  E-value=13  Score=46.81  Aligned_cols=38  Identities=24%  Similarity=0.242  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063          680 KEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  721 (776)
Q Consensus       680 ReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq  721 (776)
                      |+||...|..+-+.+++|+    ||+.+++...|+||...++
T Consensus      1695 ~~eA~~Ll~~a~~kl~~l~----dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1695 RTEAEKLLGQANEKLDRLK----DLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHH
Confidence            3444555555555555554    5667777777777776554

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=93.69  E-value=4.8  Score=41.92  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=9.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 004063          564 DFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       564 ~l~stIdaLQEEKklLqSKLR~  585 (776)
                      .++..+...|+..+....+|..
T Consensus       107 ~lq~el~~ar~~~~~ak~~L~~  128 (246)
T PF00769_consen  107 ELQEELEEAREDEEEAKEELLE  128 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445544444555544

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=15  Score=44.92  Aligned_cols=56  Identities=18%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHhHHHHHHHHHHHhHHHHHHHHHh
Q 004063          668 NINALISELALEKEELVQALSSE----------LAQSSKLKDLNNELSRKLEHQTQRLELLTAQNM  723 (776)
Q Consensus       668 sInaLisELa~EReravsaLa~e----------sr~~~dLk~lN~ELsRKLE~qtQRLELltsq~m  723 (776)
                      -.+..+..|.-||..+=.-|...          .+.+..+...+..+.+.|+++---|+-.+....
T Consensus       497 E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~  562 (1118)
T KOG1029|consen  497 ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKL  562 (1118)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555554443321          233344444455555566666655555555443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=93.63  E-value=4.1  Score=48.96  Aligned_cols=111  Identities=23%  Similarity=0.238  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063          425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  504 (776)
Q Consensus       425 LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  504 (776)
                      +.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+..+.--|+-|+.+..-+|+--..||+=-++
T Consensus        97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~  176 (769)
T PF05911_consen   97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR  176 (769)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33444445555555666665555555666666666666677777777777777777788888888888888888888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLRSNEL  535 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL  535 (776)
                      .+..|.-|=..=-.-|..||.+|.|||..-=
T Consensus       177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~r  207 (769)
T PF05911_consen  177 AAEAASKQHLESVKKIAKLEAECQRLRALVR  207 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888887766666778899999999998753

The function of this family is unknown.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.62  E-value=4.6  Score=38.36  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=29.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      ..++...+=..|-+|       ....++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus        29 ~~~~~~~vin~i~~L-------l~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere   88 (151)
T PF11559_consen   29 SEDNDVRVINCIYDL-------LQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE   88 (151)
T ss_pred             ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566554       334444555555555555555444444444444444444444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=11  Score=45.03  Aligned_cols=146  Identities=20%  Similarity=0.210  Sum_probs=74.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ  488 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR--~L~~s~~----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ  488 (776)
                      +.-.|-|++.+++++..+=.|  ++.-...          --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus       401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek  480 (698)
T KOG0978|consen  401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK  480 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555777777776555544  2222222          1112222233333333345666777777777777777777


Q ss_pred             HHHhhhhHHHHHHHHHhhhHHHH-------HHHHHHHH-------HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063          489 LVELESFRNEYANVRLECNAADE-------RAKILASE-------VIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  554 (776)
Q Consensus       489 ~~~le~l~aErDaAq~E~n~A~E-------RaK~LAaE-------VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q  554 (776)
                      .-+.=.++.|++.+.+..+...+       +...|..-       +..||++...+-+..=++.+++..+..-+..+.+.
T Consensus       481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~  560 (698)
T KOG0978|consen  481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK  560 (698)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence            77777777888777776655543       33333333       33444444444444444444444443333333333


Q ss_pred             HHhHHHhhhhHH
Q 004063          555 ISSLEKERQDFQ  566 (776)
Q Consensus       555 ~ssi~kER~~l~  566 (776)
                      ..-+......|+
T Consensus       561 ~~e~~~~~~~Lq  572 (698)
T KOG0978|consen  561 AQEAKQSLEDLQ  572 (698)
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=93.58  E-value=7.3  Score=45.80  Aligned_cols=94  Identities=23%  Similarity=0.316  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063          423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  502 (776)
Q Consensus       423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  502 (776)
                      -.|+.-|+.|-.|+-.|..-|+.+.+       +|+.|..-..+|...+.+|.+.+++++.+..-+..-|+.+..++.. 
T Consensus        83 ~~Lq~E~~~L~kElE~L~~qlqaqv~-------~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t-  154 (617)
T PF15070_consen   83 QQLQAEAEHLRKELESLEEQLQAQVE-------NNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKAT-  154 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH-
Confidence            46777777777777777766665444       4555555556888889999999999998877777777777777665 


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          503 RLECNAADERAKILASEVIGLEEKA  527 (776)
Q Consensus       503 q~E~n~A~ERaK~LAaEVV~LEek~  527 (776)
                         +..|..+++.|-..+.+|++..
T Consensus       155 ---~SRAlsQN~eLK~QL~Elq~~F  176 (617)
T PF15070_consen  155 ---ASRALSQNRELKEQLAELQDAF  176 (617)
T ss_pred             ---HHHHHHhHHHHHHHHHHHHHHH
Confidence               3557888888888888888743

>KOG0243 consensus Kinesin-like protein [Cytoskeleton]

Probab=93.50  E-value=1.3  Score=54.50  Aligned_cols=98  Identities=20%  Similarity=0.265  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh-------hhHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLRSNEL-------KLER  539 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~--E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL-------KleK  539 (776)
                      -.++.+-.++|+|.+++.|-+-..--+.+|=--.+.  |.++..++.+.|.-|+..+++++.+++..-.       .+.+
T Consensus       404 ~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~  483 (1041)
T KOG0243|consen  404 TLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE  483 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            578889999999999999888777666554333233  6788899999999999999999888877666       4455


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQ  566 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~  566 (776)
                      +++.++..+.....++....+|=++++
T Consensus       484 ~~~~~k~~L~~~~~el~~~~ee~~~~~  510 (1041)
T KOG0243|consen  484 EKEKLKSKLQNKNKELESLKEELQQAK  510 (1041)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555444444444433333

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.49  E-value=6.4  Score=47.82  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHhhhHHHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV---RLECNAADERAKI  515 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA---q~E~n~A~ERaK~  515 (776)
                      +.-.++.-+.....|--||+.|-..|-++-+...+|+++..-|+.++..-....-.+..++++.   --+.++|...+|.
T Consensus       669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~  748 (970)
T KOG0946|consen  669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKK  748 (970)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHH
Confidence            3334444455677788888888888888888888888888877777652111111121212211   1244556666666


Q ss_pred             HHHHHHHHHHHH
Q 004063          516 LASEVIGLEEKA  527 (776)
Q Consensus       516 LAaEVV~LEek~  527 (776)
                      |-.+-..|++++
T Consensus       749 l~~~q~~l~~~L  760 (970)
T KOG0946|consen  749 LENDQELLTKEL  760 (970)
T ss_pred             HHHHHHHHHHHH
Confidence            666666666666

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.42  E-value=20  Score=42.03  Aligned_cols=75  Identities=15%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063          466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ  545 (776)
Q Consensus       466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~  545 (776)
                      .......-|.+.+..+++++.....+++.|+.+..-.-.      +.......++..|+.++..+|.+...++..++.++
T Consensus       191 ~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~------~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~  264 (754)
T TIGR01005       191 SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMG------NNATLATQQLAELNTELSRARANRAAAEGTADSVK  264 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445556666666666666666666666665433211      11112225666666666666665555555544444


Q ss_pred             H
Q 004063          546 S  546 (776)
Q Consensus       546 ~  546 (776)
                      .
T Consensus       265 ~  265 (754)
T TIGR01005       265 K  265 (754)
T ss_pred             H
Confidence            3

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=93.32  E-value=15  Score=42.32  Aligned_cols=118  Identities=18%  Similarity=0.325  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yN---qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      +..-|...++.+..|..|-+.|..+|-   .-...+.++..+++.++..+..-...++.=..=|-..+-+..+..++...
T Consensus       311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~  390 (560)
T PF06160_consen  311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE  390 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence            344555555666666666666666652   12234445555555555555444444444455566666666777777788


Q ss_pred             HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063          516 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  556 (776)
Q Consensus       516 LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s  556 (776)
                      +..+...+-+.+..||..|.++++.+..++.++..+++.++
T Consensus       391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888877777776

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=93.28  E-value=9.7  Score=38.02  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          423 AALEQHIEDLTQEKFALQRSLEASRALSESLAAE  456 (776)
Q Consensus       423 aaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~E  456 (776)
                      ..|+|+|.||-..--.+.+++.+.......|..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~   59 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERK   59 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999888777777777776666555443

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.28  E-value=20  Score=41.65  Aligned_cols=72  Identities=26%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHhHhhhhHHH
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-----------ILASEVIGLEEKALRLRSNELKLERQ  540 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK-----------~LAaEVV~LEek~lqLRS~eLKleKE  540 (776)
                      ..+..+++.|+.++.......+.+..++.+.+.++..|..+..           .++.|...|+.++.+++...-+.+++
T Consensus       205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~  284 (650)
T TIGR03185       205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ  284 (650)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444433           34445555555555555544444444


Q ss_pred             hhh
Q 004063          541 LEN  543 (776)
Q Consensus       541 lE~  543 (776)
                      +.+
T Consensus       285 l~~  287 (650)
T TIGR03185       285 LRE  287 (650)
T ss_pred             HHH
Confidence            443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PRK01156 chromosome segregation protein; Provisional

Probab=93.26  E-value=21  Score=42.56  Aligned_cols=18  Identities=17%  Similarity=0.410  Sum_probs=9.4

Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 004063          420 EDFAALEQHIEDLTQEKF  437 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKf  437 (776)
                      .+...|..-|+++..++-
T Consensus       483 ~~i~~l~~~~~~l~~~~~  500 (895)
T PRK01156        483 EKIREIEIEVKDIDEKIV  500 (895)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            455555555555544443

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=93.03  E-value=2.6  Score=49.38  Aligned_cols=40  Identities=13%  Similarity=0.281  Sum_probs=23.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      +.+++-+....+.-|.++++++++++.....+++.|+.+.
T Consensus       258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~  297 (726)
T PRK09841        258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR  297 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3444444444555666666666666666666666666654

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=93.01  E-value=3.5  Score=39.38  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=37.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 004063          466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  513 (776)
Q Consensus       466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa  513 (776)
                      -....|+.|+..+.+++-|+.+-...++.+..+++.+..|....+.++
T Consensus        13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~   60 (120)
T PF12325_consen   13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN   60 (120)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678899999999999988888888888888888666666555554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=92.79  E-value=14  Score=42.08  Aligned_cols=29  Identities=34%  Similarity=0.578  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004063          420 EDFAALEQHIEDLTQ-EKFALQRSLEASRA  448 (776)
Q Consensus       420 ~~faaLqqhIeDLT~-EKfaLqR~L~~s~~  448 (776)
                      .++..|++-|.+|+. ++-.++++|+.+.+
T Consensus       258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~  287 (582)
T PF09731_consen  258 ERIDALQKELAELKEEEEEELERALEEQRE  287 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667776666665 45577788877764

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.75  E-value=13  Score=37.91  Aligned_cols=88  Identities=18%  Similarity=0.313  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHH
Q 004063          432 LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE  511 (776)
Q Consensus       432 LT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~E  511 (776)
                      |-+|--.+.+-.++....+..+..||..|+.---.....+.+|+.++..++.+           +.-..+++........
T Consensus        32 LKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd-----------K~~L~~~k~rl~~~ek  100 (201)
T PF13851_consen   32 LKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD-----------KQSLQNLKARLKELEK  100 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            33333333344444555666666666666655544444455555444444332           3334445555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004063          512 RAKILASEVIGLEEKALRL  530 (776)
Q Consensus       512 RaK~LAaEVV~LEek~lqL  530 (776)
                      ..+.|.||-..|+.++.++
T Consensus       101 ~l~~Lk~e~evL~qr~~kl  119 (201)
T PF13851_consen  101 ELKDLKWEHEVLEQRFEKL  119 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666543

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=92.73  E-value=29  Score=42.03  Aligned_cols=107  Identities=24%  Similarity=0.279  Sum_probs=64.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhH----HHHHHHHhhHHHHHHHHHHHHHHHH-HHHHH
Q 004063          418 HNEDFAALEQHIEDLTQEKFA---LQRSLEASRALSESLAAENSS----LTDSYNQQRSVVNQLKSEMEKLQEE-IKVQL  489 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfa---LqR~L~~s~~l~EsLa~ENsa----Lt~~yNqQ~~~v~qLk~~mE~Lq~E-i~aQ~  489 (776)
                      +++-+++|+..=+.|..+-++   ..+-|-..-+-+++|...|-.    |..--|....++ .=|.+||++++| |....
T Consensus       451 kdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il-~~Kee~Ek~~~E~I~k~~  529 (961)
T KOG4673|consen  451 KDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSIL-RDKEETEKLLQETIEKHQ  529 (961)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence            678899999888888877664   344555555556665554442    222333333322 235667766555 55566


Q ss_pred             HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063          490 VELESFRNEYANVRLECNAADERAKILASEVIGLEE  525 (776)
Q Consensus       490 ~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEe  525 (776)
                      +.+...+.+|.+.|-...+-.+|+..+++=..++-.
T Consensus       530 ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~  565 (961)
T KOG4673|consen  530 AELTRQKDYYSNSRALAAALEAQALAEQATNDEARS  565 (961)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            667777777777666666666666666666555544

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=92.70  E-value=0.73  Score=39.60  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHH---hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          480 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       480 ~Lq~Ei~aQ~~~---le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      -|+.||+|....   |..+++..-++...+.+|..|++.|..||..|++++-++|+
T Consensus         5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~   60 (61)
T PF08826_consen    5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            356677766554   44568888889999999999999999999999999988876

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=92.69  E-value=7.2  Score=48.26  Aligned_cols=86  Identities=24%  Similarity=0.296  Sum_probs=65.6

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      +-+.-...++.+-++.|..|-.-||+++..+|..-     |-..+..||-.|.+++--+..+|+-.++-++.|++|-.-|
T Consensus       260 ~fykdRveelkedN~vLleekeMLeeQLq~lrars-----e~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL  334 (1195)
T KOG4643|consen  260 DFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS-----EGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL  334 (1195)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc-----ccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33445566778888899999999999998876554     2233445566677888888899999999999999999988


Q ss_pred             HHHHHhhccCC
Q 004063          580 QSKLRKASGSG  590 (776)
Q Consensus       580 qSKLR~asa~g  590 (776)
                      |..-+++.++=
T Consensus       335 q~q~eqL~~~~  345 (1195)
T KOG4643|consen  335 QVQKEQLDGQM  345 (1195)
T ss_pred             HHHHHHhhhhh
Confidence            88877655543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=92.67  E-value=4.4  Score=41.89  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHh----hccCCCc
Q 004063          569 IEALQEEKKMMQSKLRK----ASGSGKS  592 (776)
Q Consensus       569 IdaLQEEKklLqSKLR~----asa~gKa  592 (776)
                      +..++.+.+.++..|.+    ++-.|.+
T Consensus       188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V  215 (334)
T TIGR00998       188 VQEAKERLKTAWLALKRTVIRAPFDGYV  215 (334)
T ss_pred             HHHHHHHHHHHHHHhhCcEEEcCCCcEE
Confidence            45555556666666653    5566654

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.67  E-value=9.5  Score=36.27  Aligned_cols=59  Identities=19%  Similarity=0.356  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  530 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL  530 (776)
                      ..|...+.+++.++......++.++...+.++.++..+.++-+.|..++..++..+..+
T Consensus        55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~  113 (151)
T PF11559_consen   55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE  113 (151)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444455555555555555555555555555555554444444

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.65  E-value=6.6  Score=46.83  Aligned_cols=81  Identities=20%  Similarity=0.260  Sum_probs=49.1

Q ss_pred             HHHHHHHhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          449 LSESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  527 (776)
Q Consensus       449 l~EsLa~ENsaLt~~y-NqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~  527 (776)
                      .-+-|..--.-|.+.| -.+..+-.++++.+..|+.+++.|+..+..+..|++..+....+..||-+..-.--..|+.|+
T Consensus       537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~  616 (717)
T PF10168_consen  537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV  616 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555 445556677888888888888888888888888777766555444454444444444444444


Q ss_pred             HH
Q 004063          528 LR  529 (776)
Q Consensus       528 lq  529 (776)
                      .+
T Consensus       617 ~~  618 (717)
T PF10168_consen  617 DR  618 (717)
T ss_pred             HH
Confidence            43

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.61  E-value=12  Score=40.87  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=17.4

Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          560 KERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       560 kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      .+...+...+..++.+...++..|.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~~~l~  251 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELENKLN  251 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666777777777777777774

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=92.57  E-value=3.5  Score=46.71  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHH
Q 004063          471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS  550 (776)
Q Consensus       471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S  550 (776)
                      ..+++.++++|..+++-+..+.+.+.++.+.-+.+..+...-......|.-.|+++..+++-..+.++-..       ..
T Consensus         8 ~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~-------~~   80 (459)
T KOG0288|consen    8 KSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE-------KT   80 (459)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence            34555666666666666666666666666666666666666666667777777777777776666532222       22


Q ss_pred             HHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          551 YKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       551 ~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      ...++.-++.+|-+++.+|-.|+|.+
T Consensus        81 ~t~~~~~~en~~~r~~~eir~~~~q~  106 (459)
T KOG0288|consen   81 LTVDVLIAENLRIRSLNEIRELREQK  106 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            23333444445555555555555443

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=92.35  E-value=6.6  Score=33.73  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=25.4

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          464 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-----NEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       464 yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~-----aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      +.+....+.+.+..+++|+..+......+....     .++-+...-+.....+...+..++..++.++.+.|
T Consensus         7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r   79 (123)
T PF02050_consen    7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAR   79 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444333333333222     33333333333333333334444444444433333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []

Probab=92.34  E-value=15  Score=38.42  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE  525 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEe  525 (776)
                      ..+++|-..-..+++.+|.-+|  .|.+||..++.++..       ++..+.+...|+..+..|..+--..|.||-.|=.
T Consensus         9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~-------l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLq   81 (207)
T PF05546_consen    9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDE-------LEAARQEVREAKAAYDDAIQQRSSSQREVNELLQ   81 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556666666778888898886  455555555555555       5555555555555555566666667788877644


Q ss_pred             H
Q 004063          526 K  526 (776)
Q Consensus       526 k  526 (776)
                      |
T Consensus        82 R   82 (207)
T PF05546_consen   82 R   82 (207)
T ss_pred             c
Confidence            3

The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=92.31  E-value=21  Score=40.72  Aligned_cols=24  Identities=25%  Similarity=0.094  Sum_probs=17.4

Q ss_pred             cccccccCcccchHHHHHHHHHHh
Q 004063          738 THDHTAYADEGDEVVERVLGWIMK  761 (776)
Q Consensus       738 ~~~~~~~~degdevvervlgwimk  761 (776)
                      +.-++.-.-.|-|-|-||++|--+
T Consensus       354 ~~~~t~q~~~Greyv~rv~sagny  377 (499)
T COG4372         354 RRPATRQSPSGREYVTRVTSAGNY  377 (499)
T ss_pred             hhhhhccCCCCCCeeEeecccCcc
Confidence            444556667888988999998544

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=92.27  E-value=36  Score=42.78  Aligned_cols=105  Identities=19%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063          475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  554 (776)
Q Consensus       475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q  554 (776)
                      .+++.++..+|..+.-..+....|...-+.+...+......+-.++-..|+++.. |-.-+|..-+....+..+....+.
T Consensus       233 ~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~  311 (1141)
T KOG0018|consen  233 NDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKD  311 (1141)
T ss_pred             hHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhh
Confidence            3344444444444443333333333333333334444444455555566666665 555555555555555666666666


Q ss_pred             HHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063          555 ISSLEKERQDFQSTIEALQEEKKMMQ  580 (776)
Q Consensus       555 ~ssi~kER~~l~stIdaLQEEKklLq  580 (776)
                      +..++++-+...++|++|+.+++.+.
T Consensus       312 i~~~kk~~~~~~~~ie~~ek~l~av~  337 (1141)
T KOG0018|consen  312 IETAKKDYRALKETIERLEKELKAVE  337 (1141)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            66666666666667777766665443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=92.26  E-value=13  Score=46.44  Aligned_cols=62  Identities=16%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          510 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       510 ~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      ..|...|++|...|+.++..++...+-..+-.+=++..++=+.+++..++.+=+.++..|+.
T Consensus       172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~  233 (1109)
T PRK10929        172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS  233 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677777777777776665555444444444444555555555555554555554444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=92.15  E-value=0.042  Score=65.32  Aligned_cols=114  Identities=23%  Similarity=0.319  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  551 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~  551 (776)
                      ..+...+.+++..|+--...++-....++.++..+..+..|++.|..|+..|+..+..+-...=.++.++..+.+++..+
T Consensus       570 ~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l  649 (859)
T PF01576_consen  570 EEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNEL  649 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35556666677666666666666666666666666777777888888888888877776666667778888888888888


Q ss_pred             HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          552 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       552 ~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      ..+..++..++..|...|..|+.++...++-++.
T Consensus       650 ~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~  683 (859)
T PF01576_consen  650 TSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEA  683 (859)
T ss_dssp             ----------------------------------
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877888888888777777776663

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=92.13  E-value=11  Score=43.23  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      |.+.|+-|+..|-+.+.+||+..=|+..+..+..+.++.++-++.-.++.|-.+-..+-+-|+||
T Consensus       305 r~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek  369 (502)
T KOG0982|consen  305 RDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK  369 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            44555666666666666666666666666666666666666666555555555444444444444

>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN)

Probab=92.04  E-value=15  Score=38.01  Aligned_cols=131  Identities=13%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  504 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNq------------Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  504 (776)
                      ..|..++..-..-+|.+|.-+..|...-..            |...-..++..+++++.-+......+...+..|..+-.
T Consensus        58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k  137 (239)
T cd07658          58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR  137 (239)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355555555555556666666555554432            22233445555666666666666666667777777766


Q ss_pred             hhhHHHHHHH--------------------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063          505 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  564 (776)
Q Consensus       505 E~n~A~ERaK--------------------~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  564 (776)
                      |...|..+..                    .-..|..-|+.++.+.+....|++.+.......+..++.++.      ..
T Consensus       138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~  211 (239)
T cd07658         138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA  211 (239)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence            7666665442                    233566777777777777777777777776666666666665      34


Q ss_pred             HHHHHHHHH
Q 004063          565 FQSTIEALQ  573 (776)
Q Consensus       565 l~stIdaLQ  573 (776)
                      +...++.+|
T Consensus       212 ~~~~~~~~Q  220 (239)
T cd07658         212 LRKGLNQYE  220 (239)
T ss_pred             HHHHHHHHH
Confidence            566777777

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=92.02  E-value=8.7  Score=39.24  Aligned_cols=89  Identities=22%  Similarity=0.269  Sum_probs=55.3

Q ss_pred             HHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          454 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       454 a~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      --+|=+|+.+|-..  ..-..+|...+++|+.+++.+.-.++.+-.+|-..|.++   -...+.|...-..+-.+..++-
T Consensus       119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~---~~~L~~Le~~W~~~v~kn~eie  195 (221)
T PF05700_consen  119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEA---GEELRYLEQRWKELVSKNLEIE  195 (221)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677777433  335578888899999999999999999988888877653   3334444444444444444444


Q ss_pred             hHhhhhHHHhhhhH
Q 004063          532 SNELKLERQLENSQ  545 (776)
Q Consensus       532 S~eLKleKElE~l~  545 (776)
                      .-+.+++.|+..++
T Consensus       196 ~a~~~Le~ei~~l~  209 (221)
T PF05700_consen  196 VACEELEQEIEQLK  209 (221)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444433333

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.97  E-value=18  Score=43.44  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=21.6

Q ss_pred             HHhhhhHHHHHHHHHHHH-------HHHHHHHHh
Q 004063          559 EKERQDFQSTIEALQEEK-------KMMQSKLRK  585 (776)
Q Consensus       559 ~kER~~l~stIdaLQEEK-------klLqSKLR~  585 (776)
                      +.||..|..+|..|||++       .+||+|+..
T Consensus       241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqS  274 (739)
T PF07111_consen  241 EPEREELLETVQHLQEDRDALQATAELLQVRVQS  274 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578899999999999998       566667664

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2

Probab=91.95  E-value=18  Score=37.76  Aligned_cols=114  Identities=12%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH-----HHHHHHHH
Q 004063          447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA-----KILASEVI  521 (776)
Q Consensus       447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa-----K~LAaEVV  521 (776)
                      ..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+.     -....|+.
T Consensus        78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~  157 (240)
T cd07672          78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQE  157 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHH
Confidence            3466666666554555557777788888999999999988899888888888887666666665442     12256888


Q ss_pred             HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063          522 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK  560 (776)
Q Consensus       522 ~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~k  560 (776)
                      -++.++.+.+..--|++++-+....+...++..+..-|+
T Consensus       158 K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~  196 (240)
T cd07672         158 KLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV  196 (240)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999888888888888888888888887775444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=91.86  E-value=28  Score=42.10  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=17.5

Q ss_pred             HHHHHhhhHHHHHHHHhhHHHHHHHH
Q 004063          451 ESLAAENSSLTDSYNQQRSVVNQLKS  476 (776)
Q Consensus       451 EsLa~ENsaLt~~yNqQ~~~v~qLk~  476 (776)
                      +.|..+.+++.+++......+.++.+
T Consensus       228 ~~l~~e~e~l~~~~~el~~~~~~~~~  253 (908)
T COG0419         228 EELEQEIEALEERLAELEEEKERLEE  253 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34667777777777776666666666

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=91.82  E-value=7.4  Score=44.63  Aligned_cols=28  Identities=32%  Similarity=0.259  Sum_probs=16.4

Q ss_pred             cCCCCCCcCCcccccccccCCCCCCCCc
Q 004063          149 YDSSNSSKSGFQGIEESQSKGNDSFPKV  176 (776)
Q Consensus       149 ~~s~~~s~s~~~~~~~~Qs~~~~sslK~  176 (776)
                      |-|.|++..-=||+.-+=.+-.-+++|.
T Consensus        43 ~~sgnp~ve~t~GiiHLyk~n~~~s~~~   70 (493)
T KOG0804|consen   43 YSSGNPSVEETHGIIHLYKKNSHSSLKN   70 (493)
T ss_pred             ccCCCCceeeeceeEEEEecCccccccc
Confidence            4455666666677666655555555543

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=91.81  E-value=22  Score=38.66  Aligned_cols=17  Identities=18%  Similarity=0.501  Sum_probs=10.2

Q ss_pred             hhhhHHHHHHHHHHHHH
Q 004063          561 ERQDFQSTIEALQEEKK  577 (776)
Q Consensus       561 ER~~l~stIdaLQEEKk  577 (776)
                      ||..+.-.+.+|.+|-+
T Consensus       158 Eke~llesvqRLkdEar  174 (333)
T KOG1853|consen  158 EKEVLLESVQRLKDEAR  174 (333)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45555566666666643

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=91.71  E-value=23  Score=38.68  Aligned_cols=42  Identities=14%  Similarity=0.310  Sum_probs=17.5

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      ++..++.+++-|-.++--+.+..++++..+..+|.+.+-+..
T Consensus       201 ~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         201 EADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            333333333444444443444444444444444444444433

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=91.65  E-value=1.6  Score=38.07  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      .|.+|+..|.+++.++-..-=+.+-++..+..|++++.+++..+-.+=+.|..++++|+.|.+..
T Consensus         2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen    2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47778888888887775555556667777888888888888877666677777777777665543

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=91.57  E-value=15  Score=36.16  Aligned_cols=80  Identities=25%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  551 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~  551 (776)
                      .-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+..-.+..+.-.|+.++--+|+.--.+.++++..+..++.+
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555666666666666666666666666666666666555555555554444433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway

Probab=91.52  E-value=8.3  Score=33.13  Aligned_cols=46  Identities=24%  Similarity=0.305  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  514 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK  514 (776)
                      ..+.....-+..|...|..+...++.+..++..++..+.+|.-+.|
T Consensus        45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k   90 (123)
T PF02050_consen   45 AQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK   90 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444444444444444444444444444443333

Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=91.50  E-value=15  Score=41.82  Aligned_cols=85  Identities=26%  Similarity=0.284  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH-------hHHHHHHHHHhhh----hccc-------cCCCC
Q 004063          673 ISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQT-------QRLELLTAQNMAN----ENIS-------FRQPD  734 (776)
Q Consensus       673 isELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qt-------QRLELltsq~m~~----e~~~-------a~~~d  734 (776)
                      +.+-+.|+..++.+|+..-    .... ..|+..+|-.+|       ..||.+++.+-+-    |.+.       +....
T Consensus       364 ~~~ke~E~q~lr~~l~~~~----~~s~-~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~~~~~~~~~  438 (511)
T PF09787_consen  364 LKEKESEIQKLRNQLSARA----SSSS-WNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLKEEASNNRP  438 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHh----ccCC-cHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHhhccCCCC
Confidence            3344555555555555533    1112 357777777776       4456666554432    1111       11222


Q ss_pred             ccccccccccCcccchHHHHHHHHHHhhcCCC
Q 004063          735 SASTHDHTAYADEGDEVVERVLGWIMKLFPGG  766 (776)
Q Consensus       735 ~~~~~~~~~~~degdevvervlgwimklfpgg  766 (776)
                      ++   -...|.+.+|.+-.| +-+.|+..|+.
T Consensus       439 ~~---~~~~~~~~~~d~~~r-~~~~~~~~~~d  466 (511)
T PF09787_consen  439 SS---ILMKYSNSEDDAESR-VPLLMKDSPHD  466 (511)
T ss_pred             ch---hhHhhccCCCchhhh-hhhhccCCCcc
Confidence            22   234566677777777 77777777665

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PRK11281 hypothetical protein; Provisional

Probab=91.44  E-value=49  Score=41.81  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=22.7

Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +.........+.|+-+...++.+|.+.+.||..+-
T Consensus       217 ~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in  251 (1113)
T PRK11281        217 GNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAIN  251 (1113)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455556666677777777777777777665

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=91.42  E-value=1.7  Score=39.37  Aligned_cols=66  Identities=18%  Similarity=0.297  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      ||.||.++=-.--=++-+++.++++-..+..++..+..-|..|..+.+.|++|...-|.|||.+.+
T Consensus         9 LE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG   74 (79)
T PRK15422          9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   74 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444432222223444444555555556666667777888899999999999999999996543

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=91.22  E-value=5  Score=39.99  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=67.0

Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH-HHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ-SEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~-~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      ++.+.|++..+.|+.+-......+..||..|+.+..+.|..-....+...++. .++..++.+..-++-+=.-++..-.-
T Consensus        23 E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~q  102 (159)
T PF05384_consen   23 EQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQ  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66789999999999999999999999999999999999888877788877754 34555555555444444444444445


Q ss_pred             HHHHHHHHHHHHHh
Q 004063          572 LQEEKKMMQSKLRK  585 (776)
Q Consensus       572 LQEEKklLqSKLR~  585 (776)
                      |+.....|+-+|++
T Consensus       103 Lr~rRD~LErrl~~  116 (159)
T PF05384_consen  103 LRERRDELERRLRN  116 (159)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555554

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.09  E-value=2.8  Score=42.99  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=10.7

Q ss_pred             HHHHHhHHHhhhhHHHHHHHHHHH
Q 004063          552 KKKISSLEKERQDFQSTIEALQEE  575 (776)
Q Consensus       552 ~~q~ssi~kER~~l~stIdaLQEE  575 (776)
                      ..++..+.++.+.+...++++|+.
T Consensus       145 ~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        145 KNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333443444444444455555543

>TIGR02977 phageshock_pspA phage shock protein A

Probab=91.09  E-value=19  Score=36.56  Aligned_cols=50  Identities=22%  Similarity=0.311  Sum_probs=25.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063          507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  556 (776)
Q Consensus       507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s  556 (776)
                      ....+.+..|..++..+...+.+|+...-++++.++.++.....+..++.
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~  144 (219)
T TIGR02977        95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ  144 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555444444443

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=91.06  E-value=8.8  Score=38.19  Aligned_cols=111  Identities=25%  Similarity=0.348  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  527 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~  527 (776)
                      .||-.+..|-+.|.++|=.-  +|..|==.+          -.+||.|    |++.       .++.....|+..|.+..
T Consensus         3 ~lA~~Ig~EfE~lId~~G~e--~v~~LmP~V----------V~vLE~L----e~~~-------~~n~~~~~e~~~L~~d~   59 (158)
T PF09744_consen    3 DLASSIGKEFERLIDRYGEE--AVKGLMPKV----------VRVLELL----ESLA-------SRNQEHEVELELLREDN   59 (158)
T ss_pred             HHHHHHHHHHHHHHHHhChh--HHHHHHHHH----------HHHHHHH----HHHH-------HhhhhhhhHHHHHHHHH
Confidence            57788888888888888542  333332222          1122222    2211       12233334555555555


Q ss_pred             HHHHhHhhhhHHHhhhhHHHHHHHHHHHH----hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          528 LRLRSNELKLERQLENSQSEISSYKKKIS----SLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       528 lqLRS~eLKleKElE~l~~Er~S~~~q~s----si~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      .+|..+.- .+|+      .+..+..++.    ....|+.++..-|+.||++.+.|+.++++.+.
T Consensus        60 e~L~~q~~-~ek~------~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~  117 (158)
T PF09744_consen   60 EQLETQYE-REKE------LRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD  117 (158)
T ss_pred             HHHHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            55433221 1222      2233333333    56688889999999999999999999997544

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.05  E-value=5.8  Score=47.66  Aligned_cols=38  Identities=34%  Similarity=0.384  Sum_probs=20.9

Q ss_pred             CCCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHH
Q 004063          638 SGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEK  680 (776)
Q Consensus       638 s~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~ER  680 (776)
                      +.-++.|+.|.|+ .-.+-.|+    --++-|++=|..+.+|+
T Consensus       350 s~~dl~~psG~~a-~~lAmmlq----~~ldain~eirliqeEk  387 (916)
T KOG0249|consen  350 SSADLLSPSGASA-QTLAMMLQ----EQLDAINKEIRLIQEEK  387 (916)
T ss_pred             ccccccCcchhhh-hhhhhhcc----cCCCcccchhhHhHhhh
Confidence            3446677889882 11111333    12456777676766666

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.94  E-value=22  Score=38.54  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=12.6

Q ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 004063          409 NQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ  440 (776)
Q Consensus       409 ~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLq  440 (776)
                      ..++.++.....++.  .+-+.+|..+....+
T Consensus       199 ~~~~i~~~~~~~~~~--~~~l~~l~~~l~~~~  228 (444)
T TIGR03017       199 QEKGIVSSDERLDVE--RARLNELSAQLVAAQ  228 (444)
T ss_pred             HHcCCcccCcccchH--HHHHHHHHHHHHHHH
Confidence            345555554433332  133444544444433

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=90.91  E-value=17  Score=35.55  Aligned_cols=124  Identities=17%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 004063          428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLT-DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC  506 (776)
Q Consensus       428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt-~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~  506 (776)
                      -|+++--+-..|+..+.+.+.-..+.-+=.+.|. -+|=+..-...+|.+.+|.       --.+|..++.=+.+..+-+
T Consensus         7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeE-------Rn~eL~~Lk~~~~~~v~~L   79 (177)
T PF13870_consen    7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEE-------RNKELLKLKKKIGKTVQIL   79 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555544444333333333 3444443344444444433       3344555555566666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      ++-.|....+..|...+..++....-..-+++.++..++.+++.++++...+
T Consensus        80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777666666666666666666666666666666666665543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=90.85  E-value=2.7  Score=43.13  Aligned_cols=73  Identities=18%  Similarity=0.317  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063          474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  553 (776)
Q Consensus       474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~  553 (776)
                      ++..+.+|++|++.=..+|+.+..++          +.+...|+..+..++..+.+|+.+-=++.++++.++.|++.++.
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~~----------~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~  160 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNTW----------NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANL  160 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666666544444444333332          24555555555555555555444444444555555555555444


Q ss_pred             HHH
Q 004063          554 KIS  556 (776)
Q Consensus       554 q~s  556 (776)
                      ++.
T Consensus       161 ~~~  163 (206)
T PRK10884        161 QLD  163 (206)
T ss_pred             HHH
Confidence            444

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=90.78  E-value=14  Score=40.11  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS  546 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~  546 (776)
                      -+..|+..|..+++-++--++.+++|-.|..+..-       +...|--.+..||+.+.+++-.-.+.-++++.+++
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y-------qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~  147 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY-------QVDLLKDKLEELEETLAQLQREYREKIRELERQKR  147 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888888888888888888776433       44556666677777776665544444444444443

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF13166 AAA_13: AAA domain

Probab=90.78  E-value=37  Score=39.21  Aligned_cols=42  Identities=26%  Similarity=0.467  Sum_probs=20.9

Q ss_pred             HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          538 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       538 eKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      ++++..+..++....+++..++..-......++.+-++++.+
T Consensus       430 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~  471 (712)
T PF13166_consen  430 EKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL  471 (712)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            344444444455555555444444444445555555555555

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=90.75  E-value=21  Score=44.93  Aligned_cols=44  Identities=7%  Similarity=0.041  Sum_probs=27.5

Q ss_pred             hhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          541 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       541 lE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ++.++.|..+.........+.|+-+...++.+|.+.+.||..+-
T Consensus       189 ~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in  232 (1109)
T PRK10929        189 VDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLN  232 (1109)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555566666666677777777777777666666553

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=90.70  E-value=51  Score=40.80  Aligned_cols=167  Identities=14%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHH-----------------HHHHHHHHHH
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------------NQLKSEMEKL  481 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v-----------------~qLk~~mE~L  481 (776)
                      ...+..+.+.+..+..+.-.+...+.+.+...+.+......+.+.+-+....+                 .++..++..+
T Consensus       536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  615 (1047)
T PRK10246        536 EKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLL  615 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH----------------------------HHHHHH---HHHHHHHHHHHH
Q 004063          482 QEEIKVQLVELESFRNEYANVRLECNAADER----------------------------AKILAS---EVIGLEEKALRL  530 (776)
Q Consensus       482 q~Ei~aQ~~~le~l~aErDaAq~E~n~A~ER----------------------------aK~LAa---EVV~LEek~lqL  530 (776)
                      ++ +......++.+..+....+..+..+..+                            ...+..   +...+++++..+
T Consensus       616 ~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1047)
T PRK10246        616 SQ-RHELQGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQSWQQRQNELTALQNRIQQL  694 (1047)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       531 RS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      +...-.+.+..+.++.........+..+......+...+..+.+....++.++..+
T Consensus       695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  750 (1047)
T PRK10246        695 TPLLETLPQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKA  750 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=90.69  E-value=28  Score=37.79  Aligned_cols=35  Identities=11%  Similarity=0.217  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004063          467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN  501 (776)
Q Consensus       467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa  501 (776)
                      ......-|.++++++++++.....++..|+.+..-
T Consensus       169 ~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       169 AQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            33456667777777777777777778888776543

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=90.50  E-value=25  Score=41.19  Aligned_cols=12  Identities=0%  Similarity=-0.044  Sum_probs=7.0

Q ss_pred             HHhhHHHHHHHH
Q 004063          665 MIHNINALISEL  676 (776)
Q Consensus       665 ~IdsInaLisEL  676 (776)
                      ..|.++.|...|
T Consensus       526 ~~Ea~r~lr~~l  537 (754)
T TIGR01005       526 AEEELRVKEEAV  537 (754)
T ss_pred             chHHHHHHHHHH
Confidence            456666665555

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=90.44  E-value=32  Score=37.92  Aligned_cols=150  Identities=20%  Similarity=0.358  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          423 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  491 (776)
Q Consensus       423 aaLqqhIeDLT~EKfaLqR~L~~s~~-----------l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~  491 (776)
                      ||++.|=+-.|.+ --|.++++++++           =+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus       102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~  180 (305)
T PF14915_consen  102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA  180 (305)
T ss_pred             HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444443 345666666665           3446778888888888888888889999988888888888888


Q ss_pred             hhhhHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063          492 LESFRNEYANVRLECNAA-------DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  564 (776)
Q Consensus       492 le~l~aErDaAq~E~n~A-------~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  564 (776)
                      |+.+..+..-++...-+.       .+....--.--..+|+|+-++-|.-+=++.+|+.+..+.+.-++-+.-|   -++
T Consensus       181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~Vini---Q~~  257 (305)
T PF14915_consen  181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINI---QDQ  257 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHH
Confidence            888776666655444332       2233333345577899999999999999999999998877766666655   566


Q ss_pred             HHHHHHHHHHHH
Q 004063          565 FQSTIEALQEEK  576 (776)
Q Consensus       565 l~stIdaLQEEK  576 (776)
                      ++.+|..||-|.
T Consensus       258 f~d~~~~L~ae~  269 (305)
T PF14915_consen  258 FQDIVKKLQAES  269 (305)
T ss_pred             HHHHHHHHHHHH
Confidence            778888888443

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=90.40  E-value=5.4  Score=47.91  Aligned_cols=83  Identities=20%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  574 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  574 (776)
                      +.+|...|++...--.|-++.|...|.+-..-.++.|+.-|   .+.+.|..|.++++++|..+.++++.+..-+++|.-
T Consensus       175 ~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~  251 (916)
T KOG0249|consen  175 LNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRG  251 (916)
T ss_pred             HHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            34455555554444455555555555533333344444333   233456666666666666666666666666666665


Q ss_pred             HHHHHH
Q 004063          575 EKKMMQ  580 (776)
Q Consensus       575 EKklLq  580 (776)
                      |.+.|.
T Consensus       252 e~~qL~  257 (916)
T KOG0249|consen  252 ELDQLR  257 (916)
T ss_pred             HHHHHH
Confidence            555444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.37  E-value=57  Score=40.78  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             ccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          650 ALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQS  694 (776)
Q Consensus       650 af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~  694 (776)
                      .++++ +++-+|...-++-.+.|=..|.+-..++.-+|+.+...+
T Consensus       459 nlEek-VklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~  502 (1243)
T KOG0971|consen  459 NLEEK-VKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA  502 (1243)
T ss_pred             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555 666666666666666666666666666777777666544

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=90.37  E-value=17  Score=43.31  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=66.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      ....|....++.+.|+.++..|+.++..++-...++.++++....+..-.   ...+...+..+.... +=+++.+.|+.
T Consensus       232 l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N  307 (670)
T KOG0239|consen  232 LEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHN  307 (670)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            34445556666889999999999999999999999999888877665444   555556677777666 66788888888


Q ss_pred             HHHhhccCCCc
Q 004063          582 KLRKASGSGKS  592 (776)
Q Consensus       582 KLR~asa~gKa  592 (776)
                      .+..+-++-++
T Consensus       308 ~i~eLkGnIRV  318 (670)
T KOG0239|consen  308 EILELKGNIRV  318 (670)
T ss_pred             HHHHhhcCceE
Confidence            88888887776

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=90.28  E-value=30  Score=43.34  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=13.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHH
Q 004063          561 ERQDFQSTIEALQEEKKMMQSKL  583 (776)
Q Consensus       561 ER~~l~stIdaLQEEKklLqSKL  583 (776)
                      |=+.++..+++|+-+|+.|.-+.
T Consensus       579 elkk~idaL~alrrhke~LE~e~  601 (1195)
T KOG4643|consen  579 ELKKYIDALNALRRHKEKLEEEI  601 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666553

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=90.25  E-value=4.3  Score=35.78  Aligned_cols=55  Identities=20%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  556 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s  556 (776)
                      .....+.|.+....|+.|+..|.++-..|....-.++.+.++++.|+......+.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~   63 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344567788888888888888888887776655556666666655555554444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS

Probab=90.21  E-value=1.8  Score=38.20  Aligned_cols=66  Identities=17%  Similarity=0.318  Sum_probs=47.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004063          461 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK  526 (776)
Q Consensus       461 t~~yNqQ~~~v~qLk~~mE~-Lq~Ei~aQ~~~le~l-~aErDaAq~E~n~A~ERaK~LAaEVV~LEek  526 (776)
                      .+..++--...+.+++++++ ++..++..+..+.-+ +.|||+.+..+..++++...|.+.|..||++
T Consensus        12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~   79 (79)
T PF04380_consen   12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ   79 (79)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34444444444556666654 344555555555555 9999999999999999999999999999864

BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.

>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7

Probab=90.19  E-value=19  Score=37.51  Aligned_cols=61  Identities=13%  Similarity=0.227  Sum_probs=40.8

Q ss_pred             HHHHHHHHhhhH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhH
Q 004063          448 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA  508 (776)
Q Consensus       448 ~l~EsLa~ENsa-Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~  508 (776)
                      .+++.|.+++.. |..=...+...+..++..|+.++..++....++...+..|..+-.+...
T Consensus        78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~  139 (233)
T cd07649          78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEG  139 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666633 3333344566778888888888888888888888887777665544444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.11  E-value=7.5  Score=46.36  Aligned_cols=77  Identities=14%  Similarity=0.226  Sum_probs=42.6

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      +.|++-|-..+.-=..+++.|+.-|..+|-.-+..|+..++--+.|.+.-+.|.+||-+-...-+.|...++++-+.
T Consensus       546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~  622 (717)
T PF10168_consen  546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL  622 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444344444444556666666666666666666666666666665555666666655555544554444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK10698 phage shock protein PspA; Provisional

Probab=89.93  E-value=26  Score=36.17  Aligned_cols=121  Identities=14%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  500 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  500 (776)
                      -..+|.|.|.||-..--.+.+++++..+.-..+..       +|.+....       ++.++..  |. ++|..=..+.+
T Consensus        25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~-------~~~~e~k--A~-~Al~~G~EdLA   87 (222)
T PRK10698         25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQ-------QVEWQEK--AE-LALRKEKEDLA   87 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH-------HHHHHHH--HH-HHHHCCCHHHH
Confidence            45799999999999888887777765544433322       22222222       2222221  00 11111111111


Q ss_pred             -HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          501 -NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       501 -aAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                       .|..+-..+.+++..|..+....+..+.+|+....+++..++.++..++.+..++..+
T Consensus        88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A  146 (222)
T PRK10698         88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAA  146 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1233444456666777777777777777777777777777777777776666666654

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=89.86  E-value=4  Score=39.50  Aligned_cols=64  Identities=31%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC--NAADERAKILASEVIGLEEKALRLRSN  533 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~--n~A~ERaK~LAaEVV~LEek~lqLRS~  533 (776)
                      .+.++..++.+|++++......+..+.+|+.+.....  .++......|..|+..|++++..||+.
T Consensus        73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~  138 (169)
T PF07106_consen   73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSG  138 (169)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4555566666666666666666666666666655554  566777778888888888888888863

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=89.84  E-value=51  Score=39.39  Aligned_cols=141  Identities=23%  Similarity=0.278  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004063          446 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAADERAKILASEVIG  522 (776)
Q Consensus       446 s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l---~aErDaAq~E~n~A~ERaK~LAaEVV~  522 (776)
                      =+++-++|-.=|.+|++-=|+|.. |..|++.+.++.+.+.-..-....+   ..++..+-.+. .-.++...++..+..
T Consensus       123 ~~~lk~~lee~~~el~~~k~qq~~-v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~-~L~~~~~~~~~q~~~  200 (629)
T KOG0963|consen  123 NEELKEELEEVNNELADLKTQQVT-VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREA-GLKDEEQNLQEQLEE  200 (629)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            456777788888888877776654 4556666666655544333322222   12222222111 123455667888888


Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHH----HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          523 LEEKALRLRSNELKLERQLENSQSE----ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~E----r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      ||+++..+-+..+...+++..++.-    ...--.+|.+||.|=...+.-|..||+|...|...|..+..
T Consensus       201 le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~  270 (629)
T KOG0963|consen  201 LEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANS  270 (629)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999988877777788887765544    77778899999999999999999999999999888875443

>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1)

Probab=89.84  E-value=30  Score=36.79  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhhhHHHhhhh
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENS  544 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK-------~LAaEVV~LEek~lqLRS~eLKleKElE~l  544 (776)
                      .++...++++|.-.....-.++.-+..|..+-.+...|..|..       ....|+.-+..++.+.+-.--+++.+-+..
T Consensus       115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~  194 (258)
T cd07680         115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKV  194 (258)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467788888888888888888888888888887778876633       234667777777666655555555554444


Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          545 QSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       545 ~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ..+++.+...|.      ..+....|.+|
T Consensus       195 l~~ln~~~~~y~------~~m~~vfd~~Q  217 (258)
T cd07680         195 LDDVGKTTPQYM------ENMEQVFEQCQ  217 (258)
T ss_pred             HHHHHHhhHHHH------HHHHHHHHHHH
Confidence            444444444444      24667888888

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.63  E-value=34  Score=37.07  Aligned_cols=161  Identities=18%  Similarity=0.231  Sum_probs=121.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      ..+.+++|.+-..|+-.|...++|.+...+.-++.|..|...+....|    .....++.+|.|=+|++.|--   .++.
T Consensus        20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~----k~~~~k~KLE~LCRELQk~Nk---~lke   92 (309)
T PF09728_consen   20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELS----KAILAKSKLESLCRELQKQNK---KLKE   92 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            367899999999999999999999999999999999999999988887    445677777888777776653   3444


Q ss_pred             HHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          498 EYANVRLECNAAD-ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       498 ErDaAq~E~n~A~-ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      |.-....+....+ +=...++.-+-....++-+-.....|+..+-+.++....++..+|..-   =.++.+.+....-|.
T Consensus        93 E~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~r---E~~~~~~~k~keLE~  169 (309)
T PF09728_consen   93 ESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELR---EEHFEKLLKQKELEV  169 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHH
Confidence            4443333322222 223456666677777777777778888888888999999999999843   246777888888899


Q ss_pred             HHHHHHHHhhcc
Q 004063          577 KMMQSKLRKASG  588 (776)
Q Consensus       577 klLqSKLR~asa  588 (776)
                      +++..||-++..
T Consensus       170 Ql~~AKl~q~~~  181 (309)
T PF09728_consen  170 QLAEAKLEQQQE  181 (309)
T ss_pred             HHHHHHHHHHHH
Confidence            999999986544

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=89.56  E-value=23  Score=38.29  Aligned_cols=113  Identities=19%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHH
Q 004063          458 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-------AKILASEVIGLEEKALRL  530 (776)
Q Consensus       458 saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ER-------aK~LAaEVV~LEek~lqL  530 (776)
                      .+|..+|.+.-..+..++.++..++.       ....+.-|+|.++.|.+.|..-       .+.|+.+--.|.+++.++
T Consensus        25 ~~L~kk~~ell~e~k~~~k~~~~~~K-------k~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~   97 (309)
T PF09728_consen   25 EALCKKYAELLEEMKRLQKQLKKLQK-------KQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR   97 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556665555555555555555554       4455555555555555544432       344455555566666655


Q ss_pred             HhHhhhhHHHhhh-hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHH
Q 004063          531 RSNELKLERQLEN-SQSEISSYKKKISSLEKERQDFQSTIEALQEEKK  577 (776)
Q Consensus       531 RS~eLKleKElE~-l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKk  577 (776)
                      -..+-..++++.. +..-+..+..++..-...|..+....+.|.+..+
T Consensus        98 ~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK  145 (309)
T PF09728_consen   98 AREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLK  145 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence            5555444555433 4444444444444444444444444444444444

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=89.48  E-value=64  Score=40.60  Aligned_cols=168  Identities=23%  Similarity=0.337  Sum_probs=98.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY  464 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~-----------------------------------L~~s~~l~EsLa~ENsaLt~~y  464 (776)
                      .+..-|+--+.-|-.||-.+++.                                   |+.-..-.+.--.|-+++--+|
T Consensus       272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky  351 (1200)
T KOG0964|consen  272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY  351 (1200)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            46677777777777777666554                                   1111222333345666777788


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHH---HHHHhhh----------hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          465 NQQRSVVNQLKSEMEKLQEEIKV---QLVELES----------FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       465 NqQ~~~v~qLk~~mE~Lq~Ei~a---Q~~~le~----------l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      |.+...-+.++..+..|++....   -...-.+          ++.|+.......+.-.++-..|+.|...|+.+.... 
T Consensus       352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~-  430 (1200)
T KOG0964|consen  352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEK-  430 (1200)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-
Confidence            88888888888888777763221   1111222          255555566667777777778888877777655432 


Q ss_pred             hHhh-hhHHHhh-------hhHHHHHHHHHHHHhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          532 SNEL-KLERQLE-------NSQSEISSYKKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       532 S~eL-KleKElE-------~l~~Er~S~~~q~ssi~kER-------~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      -.++ +++..+.       .+.++.-+..+++..+...|       ..+++.|+++.+.+...+..||.+..
T Consensus       431 ~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~  502 (1200)
T KOG0964|consen  431 LEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN  502 (1200)
T ss_pred             HHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2222 2222222       23233333333343333333       34677888888888999999986554

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=89.32  E-value=12  Score=43.80  Aligned_cols=111  Identities=21%  Similarity=0.319  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  514 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK  514 (776)
                      -|-+.|.++++..+.|.+|-+.+...|==-..   .+-+.+.+++.|...+..=....+.=+-=|-.+|-.+..-.....
T Consensus       313 ~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~  392 (570)
T COG4477         313 ILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALT  392 (570)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            45677888888888888888888888843222   233334444333333222222222222234445555566666666


Q ss_pred             HHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063          515 ILASEVIGLEEKALRLRSNELKLERQLENSQSEI  548 (776)
Q Consensus       515 ~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er  548 (776)
                      ....+-+.+.+.++.||-.+++++-.+++++..+
T Consensus       393 ~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l  426 (570)
T COG4477         393 DIEDEQEKVQEHLTSLRKDELEARENLERLKSKL  426 (570)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777778888888888887766666655443

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=89.30  E-value=17  Score=41.79  Aligned_cols=73  Identities=21%  Similarity=0.132  Sum_probs=32.2

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063          461 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  535 (776)
Q Consensus       461 t~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL  535 (776)
                      +.+|++  ++++..+...+.+-.|...-..++..+.++..++-..+..-+.+.++++.|...++|.-.-|+.++.
T Consensus       341 ~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~  413 (493)
T KOG0804|consen  341 MSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD  413 (493)
T ss_pred             HHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            334444  3333333333333333333233334444444555445555555555555555555444444444443

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=89.21  E-value=14  Score=39.12  Aligned_cols=19  Identities=21%  Similarity=0.328  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHhhc
Q 004063          569 IEALQEEKKMMQSKLRKAS  587 (776)
Q Consensus       569 IdaLQEEKklLqSKLR~as  587 (776)
                      ++.++.+.+.++..|.++.
T Consensus       185 ~~~~~a~~~~~~a~l~~a~  203 (346)
T PRK10476        185 VDALVAQRAAREAALAIAE  203 (346)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            3455556666666666543

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=89.11  E-value=31  Score=35.93  Aligned_cols=22  Identities=14%  Similarity=0.074  Sum_probs=13.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHh
Q 004063          564 DFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       564 ~l~stIdaLQEEKklLqSKLR~  585 (776)
                      .....+..++...+.++.+|.+
T Consensus       183 ~~~~~~~~~~~~l~~a~~~l~~  204 (327)
T TIGR02971       183 LAQAEVKSALEAVQQAEALLEL  204 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            3445566666666666666663

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=88.94  E-value=19  Score=39.33  Aligned_cols=21  Identities=10%  Similarity=0.216  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 004063          567 STIEALQEEKKMMQSKLRKAS  587 (776)
Q Consensus       567 stIdaLQEEKklLqSKLR~as  587 (776)
                      ..+..++.+.+.++..|.++.
T Consensus       227 ~~~~~~~~~l~~~~~~l~~~~  247 (421)
T TIGR03794       227 KELETVEARIKEARYEIEELE  247 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666433

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins

Probab=88.92  E-value=28  Score=35.21  Aligned_cols=14  Identities=14%  Similarity=0.375  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHH
Q 004063          432 LTQEKFALQRSLEA  445 (776)
Q Consensus       432 LT~EKfaLqR~L~~  445 (776)
                      +=.|+-++.+.-++
T Consensus        27 f~keRa~iE~eYak   40 (251)
T cd07653          27 FVKERAAIEQEYAK   40 (251)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33455555444433

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=88.91  E-value=63  Score=39.24  Aligned_cols=65  Identities=28%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          520 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       520 VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      |.-|+.+|..||.+-=--.|-++.+..+-..+.+++.+-.+-=..+.--|++||+|.+-++.+..
T Consensus       589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e  653 (786)
T PF05483_consen  589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE  653 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            33455566666554333355566677777777777776666666677778888888877776554

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>TIGR00634 recN DNA repair protein RecN

Probab=88.86  E-value=50  Score=37.94  Aligned_cols=60  Identities=20%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          521 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       521 V~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ..+++|+..++.-.-|-..+++.+...+..+++++..+...    ...++.|+++++.++.++.
T Consensus       304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~----~~~le~L~~el~~l~~~l~  363 (563)
T TIGR00634       304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDS----DESLEALEEEVDKLEEELD  363 (563)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHHH
Confidence            34555555554433333345555555555555555544321    1234445555555555444

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin

Probab=88.75  E-value=17  Score=39.04  Aligned_cols=75  Identities=25%  Similarity=0.392  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH----HHHhh
Q 004063          512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS----KLRKA  586 (776)
Q Consensus       512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS----KLR~a  586 (776)
                      ..+.+..++..++..+..+.++|-.++-.+++-+.|.++.++.++++++-|=-...+.++|.+|++.+..    |.||.
T Consensus       170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl  248 (267)
T PF10234_consen  170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNL  248 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3456677888888888888888888888889999999999999999999999999999999999988764    55553

Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.57  E-value=17  Score=34.73  Aligned_cols=88  Identities=18%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF  495 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-~~~le~l  495 (776)
                      ..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+--..   +. .+...-.
T Consensus        13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~---ak~~l~~r~~   89 (107)
T PF09304_consen   13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQ---AKLELESRLL   89 (107)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4566789999999998887777766666667778888888888888888887777777777654211   11 2222234


Q ss_pred             HHHHHHHHHhhh
Q 004063          496 RNEYANVRLECN  507 (776)
Q Consensus       496 ~aErDaAq~E~n  507 (776)
                      ++|-|.|..|+-
T Consensus        90 k~~~dka~lel~  101 (107)
T PF09304_consen   90 KAQKDKAILELK  101 (107)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHH
Confidence            666666666553

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins

Probab=88.43  E-value=21  Score=33.82  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA  527 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~  527 (776)
                      ...+.|-.+|..|.+.+=.....+.+++.++..+..+++.-.........+++.+...++-.. =...|...+..+|+++
T Consensus        34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~-l~~~L~~~~~e~eeeS  112 (150)
T PF07200_consen   34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDA-LLARLQAAASEAEEES  112 (150)
T ss_dssp             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHHHHH
Confidence            333444444444444433333333333333333333322222233333334444433333222 2345777888888888


Q ss_pred             HHH
Q 004063          528 LRL  530 (776)
Q Consensus       528 lqL  530 (776)
                      -.+
T Consensus       113 e~l  115 (150)
T PF07200_consen  113 EEL  115 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.10  E-value=14  Score=37.93  Aligned_cols=67  Identities=24%  Similarity=0.340  Sum_probs=45.1

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST  568 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st  568 (776)
                      +|...++-.++.+.|..|+..|+.++..|+...=++++.+.....++.+..+++..++.-|.+|.-.
T Consensus        40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~  106 (251)
T PF11932_consen   40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL  106 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555566666666666666666666666666667777777777777777777777777766553

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=88.06  E-value=31  Score=35.79  Aligned_cols=15  Identities=20%  Similarity=0.275  Sum_probs=6.3

Q ss_pred             hhHHHHHHHHHHHHH
Q 004063          420 EDFAALEQHIEDLTQ  434 (776)
Q Consensus       420 ~~faaLqqhIeDLT~  434 (776)
                      .++..++..++.+..
T Consensus        80 ~~l~~a~a~l~~~~~   94 (334)
T TIGR00998        80 LALAKAEANLAALVR   94 (334)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334444444444333

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=87.92  E-value=7.2  Score=40.83  Aligned_cols=22  Identities=23%  Similarity=0.219  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILA  517 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LA  517 (776)
                      +.||+.++.++..|..+.+...
T Consensus       144 ~~~~~~~~~~~~~a~~~~~~a~  165 (331)
T PRK03598        144 ANDLENARSSRDQAQATLKSAQ  165 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666666555555444443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=87.90  E-value=32  Score=41.49  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      |.|++...++....-.|-.|-+.|...-=+-+..+..+.-.+-+|+.+
T Consensus       485 fklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq  532 (698)
T KOG0978|consen  485 FKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ  532 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777776666666666655555544455555555555444444

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=87.81  E-value=35  Score=34.94  Aligned_cols=66  Identities=20%  Similarity=0.225  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      -+..|--.|.+|+..|+.++..++-..+-.-.--+=++..++-+..++..+..+.+.|+..|+...
T Consensus       147 l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R  212 (240)
T PF12795_consen  147 LSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKR  212 (240)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777665444433332233455566666777777777777777776654

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.80  E-value=5.4  Score=35.95  Aligned_cols=64  Identities=22%  Similarity=0.310  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA  586 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~a  586 (776)
                      ||+|+.+.--.---++-+++.|+++-.++..+++.+..-|..|..+.+.|++|-..-|.|||..
T Consensus         9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL   72 (79)
T COG3074           9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL   72 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444332222234445555555555566666666667777788888888888888888843

>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4

Probab=87.72  E-value=35  Score=34.83  Aligned_cols=149  Identities=11%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      +..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-+++.=+-+......++.+
T Consensus        10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~   89 (201)
T cd07622          10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG   89 (201)
T ss_pred             CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567898888888888765444555555544444556677778888888777666666666555554444444333332


Q ss_pred             ----------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhH
Q 004063          496 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF  565 (776)
Q Consensus       496 ----------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l  565 (776)
                                --||...-..+..+..+-...+.+.+.+++.+.+.+..   ++++++..+.+.+.+..++          
T Consensus        90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~----------  156 (201)
T cd07622          90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKA----------  156 (201)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----------
Confidence                      23455555555555556666777888888877777544   5666666666555555444          


Q ss_pred             HHHHHHHHHHHH
Q 004063          566 QSTIEALQEEKK  577 (776)
Q Consensus       566 ~stIdaLQEEKk  577 (776)
                      ..++++-|++|.
T Consensus       157 ~~E~~rF~~~K~  168 (201)
T cd07622         157 LEDVERFKKQKV  168 (201)
T ss_pred             HHHHHHHHHHHH
Confidence            467777777763

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.59  E-value=17  Score=38.03  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063          513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  582 (776)
Q Consensus       513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK  582 (776)
                      .+.+..|+..|..+=+    ..   ..+|..++.+|..++.-+..+..||...+..|.++++|..-|...
T Consensus        34 L~e~~kE~~~L~~Er~----~h---~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~   96 (230)
T PF10146_consen   34 LEEYRKEMEELLQERM----AH---VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDE   96 (230)
T ss_pred             HHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555544433    22   234456777888888888888888888888888888887666543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PF14362 DUF4407: Domain of unknown function (DUF4407)

Probab=87.44  E-value=41  Score=35.30  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063          544 SQSEISSYKKKISSLEKERQDFQSTIEALQE  574 (776)
Q Consensus       544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  574 (776)
                      +...+....++.+.....-+.+...++||++
T Consensus       223 l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~  253 (301)
T PF14362_consen  223 LDEARQAKVAEFQAIISANDGFLARLEALWE  253 (301)
T ss_pred             HHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence            3333333333333333444444444444443

>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]

Probab=87.22  E-value=63  Score=37.25  Aligned_cols=99  Identities=22%  Similarity=0.282  Sum_probs=76.4

Q ss_pred             hhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHh----hhhHHHH
Q 004063          494 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKE----RQDFQST  568 (776)
Q Consensus       494 ~l~aErDaAq~E~n~-A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kE----R~~l~st  568 (776)
                      .+.+||+..+..... -..+...|.--|+.|++...-|+++=+-.=-.|.++.+|.+-+-.+-+++|.+    +--++..
T Consensus       198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek  277 (446)
T KOG4438|consen  198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK  277 (446)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            446777777665544 67788888889999999999999998888888888888888777777777655    4557778


Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCc
Q 004063          569 IEALQEEKKMMQSKLRKASGSGKS  592 (776)
Q Consensus       569 IdaLQEEKklLqSKLR~asa~gKa  592 (776)
                      |+.||.=.+.++.-++.+...+-.
T Consensus       278 v~~~qti~~e~~~~lk~i~~~~~e  301 (446)
T KOG4438|consen  278 VTNLQTIEKELKALLKKISSDGVE  301 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhh
Confidence            888887777777777777776643

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.20  E-value=38  Score=34.67  Aligned_cols=89  Identities=13%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 004063          443 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG  522 (776)
Q Consensus       443 L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~  522 (776)
                      |.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++...-.++-.+.++.-+.+....|+..
T Consensus        21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k  100 (194)
T PF15619_consen   21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK  100 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444667889999988888888888888777777777777788888888888888888888888888888888888


Q ss_pred             HHHHHHHHH
Q 004063          523 LEEKALRLR  531 (776)
Q Consensus       523 LEek~lqLR  531 (776)
                      +.+++..|.
T Consensus       101 ~~~~l~~L~  109 (194)
T PF15619_consen  101 TKDELKHLK  109 (194)
T ss_pred             HHHHHHHHH
Confidence            888887763

>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]

Probab=87.19  E-value=64  Score=37.34  Aligned_cols=65  Identities=23%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      |+-+-..++|..+-+.-+--+-|||-.-+.++..+|.-.+.   +          =-.|-+-+|+|-.||+-||.||-
T Consensus       161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEa---l----------vN~LwKrmdkLe~ekr~Lq~KlD  225 (552)
T KOG2129|consen  161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEA---L----------VNSLWKRMDKLEQEKRYLQKKLD  225 (552)
T ss_pred             HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHH---H----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence            44455555555555554544556666666555555443311   1          12466888999999999999993

>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like

Probab=87.14  E-value=25  Score=37.36  Aligned_cols=120  Identities=12%  Similarity=0.172  Sum_probs=63.0

Q ss_pred             HHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       452 sLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      +++.+-..+...|..++   ...-.+-..++.++..+...|+..+..|+.|-.+...|+.+.....++.-.-.+.+-++|
T Consensus        92 ~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k  168 (252)
T cd07675          92 RVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAK  168 (252)
T ss_pred             HHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHH
Confidence            33444444444444422   222255577788888888888888999998888888887774443322211111122222


Q ss_pred             hHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH--HHHH
Q 004063          532 SNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK  577 (776)
Q Consensus       532 S~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ--EEKk  577 (776)
                      ..-=+-..++++.+   ..|..++.-+-+.-     ..|-..++.||  +|++
T Consensus       169 ~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~R  218 (252)
T cd07675         169 QQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERR  218 (252)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Confidence            22222222333222   33444444443332     33777888999  4444

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]

Probab=86.87  E-value=3.8  Score=48.14  Aligned_cols=80  Identities=16%  Similarity=0.297  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHH
Q 004063          435 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK  514 (776)
Q Consensus       435 EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK  514 (776)
                      +-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|-....+|++++.|...||....++++++.
T Consensus        73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~  152 (907)
T KOG2264|consen   73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN  152 (907)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence            44556666666677777776666666666666667788888888888888888889999999999999999999888864

>TIGR02473 flagell_FliJ flagellar export protein FliJ

Probab=86.85  E-value=25  Score=32.21  Aligned_cols=47  Identities=17%  Similarity=0.214  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      .|++-|.-...-.+....+-......++.....+.+|...+..+.++
T Consensus         3 ~L~~vl~lr~~~ed~a~~~la~~~~~~~~~~~~l~~l~~~~~~~~~~   49 (141)
T TIGR02473         3 RLQKLLDLREKEEEQAKLELAKAQAEFERLETQLQQLIKYREEYEQQ   49 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444433334333333333444444455555555555444443

Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.84  E-value=34  Score=33.77  Aligned_cols=13  Identities=38%  Similarity=0.521  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHH
Q 004063          567 STIEALQEEKKMM  579 (776)
Q Consensus       567 stIdaLQEEKklL  579 (776)
                      ..++.||.+++.|
T Consensus       126 ~~ve~L~~ql~~L  138 (140)
T PF10473_consen  126 SAVEMLQKQLKEL  138 (140)
T ss_pred             HHHHHHHHHHhhh
Confidence            4445555555444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=86.81  E-value=43  Score=34.87  Aligned_cols=105  Identities=13%  Similarity=0.208  Sum_probs=66.5

Q ss_pred             HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063          454 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEE----IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR  529 (776)
Q Consensus       454 a~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E----i~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq  529 (776)
                      -...+.+...+.+.+.+|.++...+-++-.+    .......+..+..|+|.+..+++.....--.|-.-...+-+-+.-
T Consensus        29 ~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~  108 (207)
T PF05010_consen   29 KKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEG  108 (207)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3333344444444444555444444333222    222233455667777877777777766666777777777777788


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          530 LRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       530 LRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      +|.++=++.+.++.+...+.....+|.++
T Consensus       109 ~k~NEE~Lkk~~~ey~~~l~~~eqry~aL  137 (207)
T PF05010_consen  109 YKKNEETLKKCIEEYEERLKKEEQRYQAL  137 (207)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887777777777765

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins

Probab=86.75  E-value=41  Score=35.25  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      .=++.+|.....+.+.|+-+ ...+           ....+...++++|+....-+|...+-.|+.+..++..|.+-.+.
T Consensus        77 ~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~  156 (241)
T cd07656          77 VQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE  156 (241)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33566777777777777653 1222           23344455666777777777777777777777777777666665


Q ss_pred             HHHHH
Q 004063          516 LASEV  520 (776)
Q Consensus       516 LAaEV  520 (776)
                      .....
T Consensus       157 ae~~~  161 (241)
T cd07656         157 AEKQE  161 (241)
T ss_pred             HHHHH
Confidence            55443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PRK11519 tyrosine kinase; Provisional

Probab=86.70  E-value=28  Score=41.17  Aligned_cols=13  Identities=31%  Similarity=0.393  Sum_probs=8.0

Q ss_pred             HHhhHHHHHHHHH
Q 004063          665 MIHNINALISELA  677 (776)
Q Consensus       665 ~IdsInaLisELa  677 (776)
                      ..|.++.|.+.|.
T Consensus       506 ~~Ea~r~lrt~l~  518 (719)
T PRK11519        506 AIEAIRSLRTSLH  518 (719)
T ss_pred             HHHHHHHHHHHhh
Confidence            4566666666653

>PRK10869 recombination and repair protein; Provisional

Probab=86.65  E-value=69  Score=37.13  Aligned_cols=39  Identities=15%  Similarity=0.054  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          520 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       520 VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      ...+|+|+..++.=.-|--..++.+..-++..++++..+
T Consensus       298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L  336 (553)
T PRK10869        298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL  336 (553)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence            356677777665555554545566666666666666544

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=86.62  E-value=29  Score=32.82  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK  475 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk  475 (776)
                      |+-.+.......+.....-..+...-..|...+...+
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq   44 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQ   44 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7

Probab=86.61  E-value=47  Score=35.22  Aligned_cols=121  Identities=20%  Similarity=0.252  Sum_probs=71.9

Q ss_pred             cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhhHHHH--
Q 004063          410 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN--  472 (776)
Q Consensus       410 ~~~F~s-~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsLa------~E----NsaLt~~yNqQ~~~v~--  472 (776)
                      |.-|-. +..+++|..+.++|+.|.+-==.    .+|-..+..++.+.++      ..    .+.|.+-++.-++.+.  
T Consensus        43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~  122 (243)
T cd07666          43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC  122 (243)
T ss_pred             HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            444432 77899999999999988653222    3444444445544432      22    4448888998888888  


Q ss_pred             --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHHHHH
Q 004063          473 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADERA-------KILASEVIGLEEKALRL  530 (776)
Q Consensus       473 --qLk~~mE~Lq~Ei-------~aQ~~~le~l~aErDaAq~E~n~A~ERa-------K~LAaEVV~LEek~lqL  530 (776)
                        .+...+..+...+       ..+..++.++-.+|+.+|+++....|-.       -.+..||..||+++.+.
T Consensus       123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a  196 (243)
T cd07666         123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA  196 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence              6666555554432       2333344455567777777766554422       24445555566665555

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PRK10722 hypothetical protein; Provisional

Probab=86.46  E-value=1.8  Score=45.91  Aligned_cols=51  Identities=29%  Similarity=0.289  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHHH
Q 004063          671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQ  721 (776)
Q Consensus       671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELltsq  721 (776)
                      .|+-.|+.||.|--+-.-+.-.+++.|+.++++|.++|+.++.+||-+|.=
T Consensus       155 ~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdI  205 (247)
T PRK10722        155 ALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDI  205 (247)
T ss_pred             HHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677788876655556666799999999999999999999999999863

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=86.29  E-value=26  Score=36.38  Aligned_cols=41  Identities=20%  Similarity=0.314  Sum_probs=29.0

Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ....-...+.+..+|..||...+.-|+.||.....||...-
T Consensus       145 va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~  185 (192)
T PF11180_consen  145 VAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN  185 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344556677777777788888888888888888876543

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=86.20  E-value=37  Score=33.58  Aligned_cols=7  Identities=29%  Similarity=0.311  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q 004063          516 LASEVIG  522 (776)
Q Consensus       516 LAaEVV~  522 (776)
                      |..|+..
T Consensus        85 L~~eie~   91 (177)
T PF07798_consen   85 LQREIEK   91 (177)
T ss_pred             HHHHHHH
Confidence            3333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=86.07  E-value=60  Score=35.92  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHH-------HHHHHHHHHH
Q 004063          506 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQST-------IEALQEEKKM  578 (776)
Q Consensus       506 ~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~st-------IdaLQEEKkl  578 (776)
                      ++...||.+ |-.+.+.+.+++.+|-.+---.--|.+.+..||+.|+-++.-+-.|=..+..-       ||+|=.|-+-
T Consensus       122 ~~~~~ere~-lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRy  200 (319)
T PF09789_consen  122 RHFPHERED-LVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRY  200 (319)
T ss_pred             cccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHH
Confidence            344455544 33456667777776655544445556678888888888888776666666655       8888888888


Q ss_pred             HHHHHHhhcc
Q 004063          579 MQSKLRKASG  588 (776)
Q Consensus       579 LqSKLR~asa  588 (776)
                      |+.||.++-.
T Consensus       201 L~erl~q~qe  210 (319)
T PF09789_consen  201 LKERLKQLQE  210 (319)
T ss_pred             HHHHHHHHHH
Confidence            8888886543

>PF15294 Leu_zip: Leucine zipper

Probab=86.06  E-value=36  Score=37.00  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 004063          422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       422 faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m--E~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      -+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+...  ---.+++..=...++.++.|+
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~  206 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL  206 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence            477899999999999999999999999999999999999998888777555444310  000111111112345556777


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      ..+.....   ++.+.|...|..--.++++.+-.---+++++++--.+    ..+|.       .|...+..-.++.|.|
T Consensus       207 ek~~~d~~---~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq----T~ay~-------NMk~~ltkKn~QiKeL  272 (278)
T PF15294_consen  207 EKALQDKE---SQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ----TAAYR-------NMKEILTKKNEQIKEL  272 (278)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc----cHHHH-------HhHHHHHhccHHHHHH
Confidence            66644333   3566666666665555555544433445555553333    22222       3344555556777777


Q ss_pred             HHHHHh
Q 004063          580 QSKLRK  585 (776)
Q Consensus       580 qSKLR~  585 (776)
                      ..||++
T Consensus       273 Rkrl~k  278 (278)
T PF15294_consen  273 RKRLAK  278 (278)
T ss_pred             HHHhcC
Confidence            777653

>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional

Probab=85.99  E-value=46  Score=38.09  Aligned_cols=142  Identities=11%  Similarity=0.168  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhhhHHHHHHHHHHHH
Q 004063          444 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--VRLECNAADERAKILASE  519 (776)
Q Consensus       444 ~~s~~l~EsLa~ENsaLt~~yNqQ--~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDa--Aq~E~n~A~ERaK~LAaE  519 (776)
                      +-++++++.|-.+=+.+...-|++  ...|.-.+.++++-++.+..-+.+|..|+....-  -..+........-.|..|
T Consensus       215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~q  294 (434)
T PRK15178        215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQ  294 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHH
Confidence            568889999999999999988875  4678888889998888888888888888765532  123334455666677778


Q ss_pred             HHHHHHHHHHHHhHhh-------hhHHHhhhhHHHHHHHHHHHHhHH--HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          520 VIGLEEKALRLRSNEL-------KLERQLENSQSEISSYKKKISSLE--KERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       520 VV~LEek~lqLRS~eL-------KleKElE~l~~Er~S~~~q~ssi~--kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      .+.++-++..|++.--       -++.+++.|..++...+.++..-.  .--.....+.++|.-|.+.++..+.-
T Consensus       295 La~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s  369 (434)
T PRK15178        295 LAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES  369 (434)
T ss_pred             HHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888777777766422       223333344444444444432100  00122445558888888888777754

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=85.96  E-value=24  Score=35.73  Aligned_cols=55  Identities=25%  Similarity=0.329  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  553 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~  553 (776)
                      +.|-.+...-++.--.|.-.|=.||+.|--.+..+|+..   +++|..++.|.-++-+
T Consensus       126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r  180 (182)
T PF15035_consen  126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSR  180 (182)
T ss_pred             HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHc
Confidence            333333333344444555566699999999999998865   6889999888766543

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=85.94  E-value=94  Score=38.03  Aligned_cols=268  Identities=15%  Similarity=0.210  Sum_probs=159.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---Hhh-----hHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEA----SRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK  486 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~----s~~l~EsLa---~EN-----saLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  486 (776)
                      ..+.++|.+++|+.|+.|.++..-+..    -++-+++|-   .|.     ++++..-.+.-..-.+|..++..+..++.
T Consensus        23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~  102 (769)
T PF05911_consen   23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA  102 (769)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999988764321    233444332   222     33443334444444455566666666555


Q ss_pred             HHHHHhhhhH---HHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHH
Q 004063          487 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE  559 (776)
Q Consensus       487 aQ~~~le~l~---aErDaAq~E~n~A~ERa----K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~  559 (776)
                      .-.++..++.   .|+++...++.+...++    ..|..-+..+|.++.-||-.-.=++|||+=-..|++=-++....+-
T Consensus       103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~  182 (769)
T PF05911_consen  103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS  182 (769)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4444444443   36666666666555554    4677788888888888888888889999988888888888888777


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCC
Q 004063          560 KERQDFQSTIEALQEEKKMMQSKLRK-ASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDAS  638 (776)
Q Consensus       560 kER~~l~stIdaLQEEKklLqSKLR~-asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs  638 (776)
                      |--.+-++-|-+|..|=+.|..-+|+ .++  .++ .-+|-   --....+.|-...|.-           +     ..+
T Consensus       183 kqhle~vkkiakLEaEC~rLr~l~rk~lpg--paa-~a~mk---~ev~~~~~~~~~~r~r-----------~-----~~~  240 (769)
T PF05911_consen  183 KQHLESVKKIAKLEAECQRLRALVRKKLPG--PAA-LAQMK---NEVESLGRDSGENRRR-----------R-----SPS  240 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--hHH-HHHhH---HHHHHhccccccccCC-----------C-----CCC
Confidence            76667778899999999999999985 222  211 11110   0111111111100000           0     000


Q ss_pred             CCCCCCcccccccccccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063          639 GSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLE  716 (776)
Q Consensus       639 ~~p~~P~~g~~af~~~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLE  716 (776)
                      .-+ .|.  ..+ ...+..-.    +.++..-.=+-.++.|=..|..+|+..-..+.-.+-.=++...||-...-+|+
T Consensus       241 ~~~-~~~--~~~-~~~~~~~~----~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~  310 (769)
T PF05911_consen  241 RPS-SPH--DFS-PQNPQKRS----KESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLK  310 (769)
T ss_pred             ccc-ccc--ccc-ccccccch----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000 000  000 00101111    22222222334567788888888888888888888888888889988888874

The function of this family is unknown.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=85.91  E-value=75  Score=36.85  Aligned_cols=56  Identities=11%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063          468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL  523 (776)
Q Consensus       468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~L  523 (776)
                      ...+.++.++++.|...+.....+-..+...++....-.+++.++++.|..|+..|
T Consensus       277 ~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v  332 (560)
T PF06160_consen  277 EEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERV  332 (560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555544444444445555555555555555555555555555544

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=85.84  E-value=14  Score=40.81  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063          471 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  549 (776)
Q Consensus       471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE-rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~  549 (776)
                      |.+.+..++.|+.++..+.+.+++.++. ++.|+.++    +|-..|+..-+.=.+++.+.+..--+++-.+....   .
T Consensus       100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~---~  172 (352)
T COG1566         100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSREELDRARAALQAAEAALAAAQ---A  172 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH---H
Confidence            4445555666666666666666666663 66655544    35555664444445556666665555555555544   5


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh----hccCCCc
Q 004063          550 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKS  592 (776)
Q Consensus       550 S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~----asa~gKa  592 (776)
                      ..++...++++++...+..|..++..++.+.--|.+    ++..|.+
T Consensus       173 ~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V  219 (352)
T COG1566         173 AQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV  219 (352)
T ss_pred             HHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence            667788888888889899999998888888877774    5555554

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=85.59  E-value=40  Score=35.28  Aligned_cols=97  Identities=20%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----HHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL-----ERQLENSQSEISSYKKKISSLEKERQDFQSTI  569 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKl-----eKElE~l~~Er~S~~~q~ssi~kER~~l~stI  569 (776)
                      +..+...+++..-.+..+-|.|..++..++.++-.+.+.-..+     +.=+..+-.++-++...+..+...-+.+...+
T Consensus        36 ~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~  115 (225)
T COG1842          36 MESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV  115 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555666555555555555444433222     11122355667778888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHhhccCCC
Q 004063          570 EALQEEKKMMQSKLRKASGSGK  591 (776)
Q Consensus       570 daLQEEKklLqSKLR~asa~gK  591 (776)
                      ++|......|+.|+.++-....
T Consensus       116 ~~l~~~~~~Le~Ki~e~~~~~~  137 (225)
T COG1842         116 EKLKKQLAALEQKIAELRAKKE  137 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888876555333

>PF13942 Lipoprotein_20: YfhG lipoprotein

Probab=85.53  E-value=2.8  Score=42.75  Aligned_cols=50  Identities=24%  Similarity=0.288  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                      .|.-.|++||-|--+--.+.-.+++.|+.++..|..+|+.++..||-+|-
T Consensus       109 ~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTD  158 (179)
T PF13942_consen  109 VLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTD  158 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            46678899999988888888899999999999999999999999999985

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=85.52  E-value=64  Score=40.53  Aligned_cols=147  Identities=22%  Similarity=0.255  Sum_probs=89.2

Q ss_pred             cCCCccccccccccccCCchhhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH
Q 004063          400 LGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQ---------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV  470 (776)
Q Consensus       400 ~~~dE~~~e~~~~F~s~~~~~~faaLqqhIeDLT~---------EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~  470 (776)
                      ...||.+++..-++-..    -.-.|++.|+.|-.         -|.+..|-|.+.+..++     -..-++.||+-...
T Consensus       186 lr~~e~~Le~~~~~~~~----~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~-----y~~~~~ey~~~k~~  256 (1072)
T KOG0979|consen  186 LREDEKSLEDKLTTKTE----KLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVE-----YKKHDREYNAYKQA  256 (1072)
T ss_pred             HHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hHhhhHHHHHHHHH
Confidence            44566666555544332    22334444443322         13344455555555553     34568899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHhhhHHHHHHHHHHH-------HHHHHHHHHHHHHhHhhh
Q 004063          471 VNQLKSEMEKLQEEIKVQLVELES-------FRNEYANVRLECNAADERAKILAS-------EVIGLEEKALRLRSNELK  536 (776)
Q Consensus       471 v~qLk~~mE~Lq~Ei~aQ~~~le~-------l~aErDaAq~E~n~A~ERaK~LAa-------EVV~LEek~lqLRS~eLK  536 (776)
                      +.-++.+++.|..+++-=.-..+.       ..+++.-++.+|++|..+.+....       +|+.+-.+..-++-.+.+
T Consensus       257 ~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~  336 (1072)
T KOG0979|consen  257 KDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEK  336 (1072)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888876543333322       345566778888888887766554       455555555556666666


Q ss_pred             hHHHhhhhHHHHHHHHHHH
Q 004063          537 LERQLENSQSEISSYKKKI  555 (776)
Q Consensus       537 leKElE~l~~Er~S~~~q~  555 (776)
                      .++.+++++..+...+.++
T Consensus       337 rq~~i~~~~k~i~~~q~el  355 (1072)
T KOG0979|consen  337 RQKRIEKAKKMILDAQAEL  355 (1072)
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            6777777666666555544

>TIGR02231 conserved hypothetical protein

Probab=85.52  E-value=6.5  Score=44.25  Aligned_cols=49  Identities=16%  Similarity=0.184  Sum_probs=35.7

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG  588 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa  588 (776)
                      .++.+..-...|..++..+..++..+...+..|++++..|+.+|.++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~  173 (525)
T TIGR02231       125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT  173 (525)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4455555566666777777777777778888888888888888887655

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.24  E-value=23  Score=42.09  Aligned_cols=37  Identities=27%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh
Q 004063          519 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER  562 (776)
Q Consensus       519 EVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER  562 (776)
                      |+..++.++.+|       +++|++-+.+++.+++++..+.+-|
T Consensus       475 ei~~~~~~I~~L-------~~~L~e~~~~ve~L~~~l~~l~k~~  511 (652)
T COG2433         475 EIRARDRRIERL-------EKELEEKKKRVEELERKLAELRKMR  511 (652)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444555433       5666666666666666666554433

>TIGR02231 conserved hypothetical protein

Probab=85.17  E-value=11  Score=42.44  Aligned_cols=30  Identities=10%  Similarity=0.197  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .+.+|+.++++|+.+++.....++.+.+..
T Consensus        72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~  101 (525)
T TIGR02231        72 RLAELRKQIRELEAELRDLEDRGDALKALA  101 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777777777776665555555554443

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.14  E-value=10  Score=39.82  Aligned_cols=62  Identities=31%  Similarity=0.476  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ||++...+.-.--|++.+++....+.+....++..+.|-=+.+..+.|+|=||-..||.++-
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            44444433333344444444444444444455554444445666667777777555555543

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=85.02  E-value=6.3  Score=45.21  Aligned_cols=67  Identities=25%  Similarity=0.367  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHh-HHHhhhhHHHHHHHHHHHHHHH
Q 004063          513 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS-LEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       513 aK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ss-i~kER~~l~stIdaLQEEKklL  579 (776)
                      .+.|.+++-.++.++..+.++-=++.+|-++|+..-.....++.. +..+|.+++.+.+.|++|+..+
T Consensus        61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~  128 (472)
T TIGR03752        61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQL  128 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444433334333332 2244444444444444444333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=84.82  E-value=15  Score=42.97  Aligned_cols=139  Identities=23%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHH-------hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh------------HHHHHH
Q 004063          441 RSLEASRALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF------------RNEYAN  501 (776)
Q Consensus       441 R~L~~s~~l~EsLa~-------ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l------------~aErDa  501 (776)
                      |+|+-+-++-+.|-.       .|+.|-++.|+--..|.+|+-++-|--.-+..+-.+.+-=            -.+|.+
T Consensus        76 ~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~  155 (596)
T KOG4360|consen   76 RDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSA  155 (596)
T ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhhhheeeeccccccccccccCCCccCcchhh
Confidence            556666666555544       4444555566666666666655544433333333222211            234555


Q ss_pred             HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhh----hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          502 VRLECNA-ADERAKILASEVIGLEEKALRLRSNELKLERQLEN----SQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       502 Aq~E~n~-A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~----l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      -|.+..+ -.++.|.+-.|.+.|-.||..+|..++--+-.-..    ...+.+-+..++.++.+|=++.-+.+.++|||.
T Consensus       156 ~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~  235 (596)
T KOG4360|consen  156 FQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN  235 (596)
T ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555444 47888888888888888888887766532211000    122334445555555555555555555555554


Q ss_pred             HHH
Q 004063          577 KMM  579 (776)
Q Consensus       577 klL  579 (776)
                      -.|
T Consensus       236 skL  238 (596)
T KOG4360|consen  236 SKL  238 (596)
T ss_pred             HHH
Confidence            333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.73  E-value=3.2  Score=40.17  Aligned_cols=28  Identities=32%  Similarity=0.506  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 004063          564 DFQSTIEALQEEKKMMQSKLRKASGSGK  591 (776)
Q Consensus       564 ~l~stIdaLQEEKklLqSKLR~asa~gK  591 (776)
                      ++...|+.|++|.+.++.||..+-.+..
T Consensus       113 el~~~i~~l~~e~~~l~~kL~~l~~~~~  140 (169)
T PF07106_consen  113 ELREEIEELEEEIEELEEKLEKLRSGSK  140 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4667777788888888888776555333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=84.48  E-value=36  Score=35.53  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=9.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      +.|+=||-.+...|.||..-..++
T Consensus        10 GEIsLLKqQLke~q~E~~~K~~Ei   33 (202)
T PF06818_consen   10 GEISLLKQQLKESQAEVNQKDSEI   33 (202)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHH
Confidence            334444444444444433333333

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=84.01  E-value=1.4e+02  Score=38.51  Aligned_cols=83  Identities=20%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       416 ~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      .+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+...+.+..++..+-.+..+...-+.+.+.+
T Consensus       846 ~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~  925 (1294)
T KOG0962|consen  846 QKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEEL  925 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHH
Confidence            34455666666666666666666665555555555666666666666666666666665555544444444444444444


Q ss_pred             HHH
Q 004063          496 RNE  498 (776)
Q Consensus       496 ~aE  498 (776)
                      +++
T Consensus       926 k~~  928 (1294)
T KOG0962|consen  926 KNE  928 (1294)
T ss_pred             HHH
Confidence            444

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.79  E-value=11  Score=33.19  Aligned_cols=56  Identities=27%  Similarity=0.290  Sum_probs=23.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      |-.+|++--..+..|+.++++|+++-.+-....+.++.|-...+.+.++..+|.+.
T Consensus         9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~   64 (72)
T PF06005_consen    9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS   64 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444433333333333333433333444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=83.67  E-value=89  Score=35.82  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=35.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH-HHHHHH-HHHHH------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEE-IKVQL------VELESFRNEYANVRLECNAADERAKILASE  519 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~m-E~Lq~E-i~aQ~------~~le~l~aErDaAq~E~n~A~ERaK~LAaE  519 (776)
                      +++..+...+.+-...|.+-+..+-+-|+++ +.|+.. .....      ++++.++.|++.++.+++....+...|-.|
T Consensus       224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e  303 (511)
T PF09787_consen  224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE  303 (511)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555566665544444444433 223331 11011      125555555555555555555555444444


Q ss_pred             HHHHHH
Q 004063          520 VIGLEE  525 (776)
Q Consensus       520 VV~LEe  525 (776)
                      ...+|.
T Consensus       304 ~~d~e~  309 (511)
T PF09787_consen  304 LQDLEA  309 (511)
T ss_pred             HHHHHH
Confidence            444443

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases

Probab=83.65  E-value=60  Score=33.88  Aligned_cols=49  Identities=18%  Similarity=0.264  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILAS  518 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAa  518 (776)
                      ......++-.+|++++.....+|+..+..|+.+..++..|+......-.
T Consensus       106 ~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~  154 (237)
T cd07657         106 AKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVV  154 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344455566778888888888888999999998888888888766544

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=83.55  E-value=76  Score=34.93  Aligned_cols=88  Identities=20%  Similarity=0.342  Sum_probs=43.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      +|.+..+-.+.+-.++.+.|+.|.-.-=+++..+...-=++++++.+++.++--+..++..+-.+...++..|.-++...
T Consensus       165 aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i  244 (294)
T COG1340         165 AEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI  244 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444555544444444444444444444455555555555555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 004063          577 KMMQSKLR  584 (776)
Q Consensus       577 klLqSKLR  584 (776)
                      +.|..+.+
T Consensus       245 k~l~~~~~  252 (294)
T COG1340         245 KALRAKEK  252 (294)
T ss_pred             HHHHHHHH
Confidence            54444444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.49  E-value=61  Score=33.82  Aligned_cols=32  Identities=34%  Similarity=0.519  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          424 ALEQHIEDLTQEKFALQRSLEASRALSESLAA  455 (776)
Q Consensus       424 aLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~  455 (776)
                      .|..-|.+|-..=-++|-+|+.+..+-+.|.+
T Consensus        40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled   71 (193)
T PF14662_consen   40 QLAEEITDLRKQLKSLQQALQKAKALEEELED   71 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34344444444444555555555544444443

>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=83.47  E-value=71  Score=34.55  Aligned_cols=226  Identities=15%  Similarity=0.215  Sum_probs=138.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF  495 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~---~v~qLk~~mE~Lq~Ei~aQ~~~le~l  495 (776)
                      .+.+..|++-+++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++..   ....|+.++.+++.-+..-...-..+
T Consensus        71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l  150 (337)
T cd09234          71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL  150 (337)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            477889999999999999999999999988888888889999999987621   24456666655555444333333333


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHH
Q 004063          496 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE  575 (776)
Q Consensus       496 ~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEE  575 (776)
                      ..-|+.       ...-.+.|......|+..+-..+.  +-.. +.       +...++++       .+...|+.|..|
T Consensus       151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~~~-~~-------~~~v~~Lr-------~ll~kl~~lk~e  206 (337)
T cd09234         151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LDRP-ED-------EAIEKELK-------RILNKVNEMRKQ  206 (337)
T ss_pred             HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cCCc-cc-------HHHHHHHH-------HHHHHHHHHHHH
Confidence            333332       223344555555555555432111  1000 11       11222222       334456666677


Q ss_pred             HHHHHHHHHhhccCCCccCCCCCcccccccccccccccccccccccCCcccccccCCcccCCCCCCCCCccccccccccc
Q 004063          576 KKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLA  655 (776)
Q Consensus       576 KklLqSKLR~asa~gKa~~~ek~~a~~kDASTSTdDLai~d~~~esSn~E~~~~as~qe~~vs~~p~~P~~g~~af~~~~  655 (776)
                      ++.+...||....                    ++|+          .+.+++..                |. .|    
T Consensus       207 R~~l~~~Lk~k~~--------------------~DDI----------~~~ll~~~----------------~~-~~----  235 (337)
T cd09234         207 RRSLEQQLRDAIH--------------------EDDI----------TSKLVTTT----------------GG-DM----  235 (337)
T ss_pred             HHHHHHHHHHHhh--------------------cCCc----------hHHHHHhc----------------ch-hH----
Confidence            7777777774221                    2333          12222111                00 12    


Q ss_pred             ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHH
Q 004063          656 VNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLT  719 (776)
Q Consensus       656 ~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlt  719 (776)
                      -.|=+.+|..-+.....|...-..++.++.+|..+-......+....+..++-+..-|+|+.+-
T Consensus       236 e~lf~~eL~k~~~~~~~l~~~~~~Q~~ll~~i~~an~~f~~~r~~~~~~~~~Re~~l~~L~~ay  299 (337)
T cd09234         236 EDLFKEELKKHDQLVNLIEQNLAAQENILKALTEANAKYAPVRKALSETKQKRESTISSLIASY  299 (337)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            2355677888888888888888888999999988888887766665667777777777777654

This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.36  E-value=38  Score=40.21  Aligned_cols=164  Identities=19%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004063          408 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV  487 (776)
Q Consensus       408 e~~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~a  487 (776)
                      +-||+=|=-.++-=-+++|.||.-|-..|-.-...|+-.++=-+.+-.--+.|.+||-+-.-.-+-|...|.+|.+-.  
T Consensus       569 ~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~--  646 (741)
T KOG4460|consen  569 QVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSF--  646 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc--
Confidence            446665555555555667777777765554433344444444444444445566666544333333333333333311  


Q ss_pred             HHHHhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHH
Q 004063          488 QLVELES-FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ  566 (776)
Q Consensus       488 Q~~~le~-l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~  566 (776)
                       ...+-. ..+|||= .+|..-+-...+.|++-++.+..+..+-|+-   ..+-++.      .-+.+|+.-++.|..++
T Consensus       647 -~~~lp~l~~AErdF-k~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H---~~~v~~a------l~K~~Y~l~~~Q~~~iq  715 (741)
T KOG4460|consen  647 -HSELPVLSDAERDF-KKELQLIPDQLRHLGNAIETVTMKKDKQQQH---MEKVLSA------LPKPTYILSAYQRKCIQ  715 (741)
T ss_pred             -cccCCcchhHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh------ccCCcccccHHHHHHHH
Confidence             111122 2677775 4566777777777877777776666553221   1222222      22566777788888999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 004063          567 STIEALQEEKKMMQSKLR  584 (776)
Q Consensus       567 stIdaLQEEKklLqSKLR  584 (776)
                      +++..|-++....-.+++
T Consensus       716 siL~~L~~~i~~~~k~VK  733 (741)
T KOG4460|consen  716 SILKELGEHIREMVKQVK  733 (741)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988888766555544

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=83.33  E-value=14  Score=33.50  Aligned_cols=72  Identities=24%  Similarity=0.282  Sum_probs=59.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL  492 (776)
Q Consensus       417 ~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~l  492 (776)
                      .+-.++..||+-|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++    ++.++..++..+
T Consensus        21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~   92 (96)
T PF08647_consen   21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNL   92 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHh
Confidence            455789999999999999998877777788888999999999999999999999999988    555555554443

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=83.24  E-value=11  Score=34.35  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      .|......++.+..+.+..+..+...||+++.++              ..|+....++|-++|+..+.+...+..|.
T Consensus         3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl--------------~~Ek~kadqkyfa~mr~~d~l~~e~k~L~   65 (96)
T PF08647_consen    3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRL--------------EAEKAKADQKYFAAMRSKDALDNEMKKLN   65 (96)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4555666667778888999999999999999866              34456667777777777777776665554

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=83.19  E-value=34  Score=32.84  Aligned_cols=95  Identities=25%  Similarity=0.328  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      .-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+.    ..+..++..|+.+       ++.+...|
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry   84 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence            456778888888888888888888888887788888877777665333    2222333333332       35566678


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 004063          500 ANVRLECNAADERAKILASEVIGLEE  525 (776)
Q Consensus       500 DaAq~E~n~A~ERaK~LAaEVV~LEe  525 (776)
                      +++..=+.+=.|+.-.|.+.|..|-+
T Consensus        85 ~t~LellGEK~E~veEL~~Dv~DlK~  110 (120)
T PF12325_consen   85 QTLLELLGEKSEEVEELRADVQDLKE  110 (120)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            88888888888888777777776654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=82.88  E-value=9.2  Score=38.62  Aligned_cols=70  Identities=23%  Similarity=0.395  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL  516 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~L  516 (776)
                      +++++.|.......+.|..||++|.+.-.+....+.+|+.+++.|+.+       +..+..+|..    +-..++|++.|
T Consensus        86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~----L~~Im~RARkl  154 (161)
T TIGR02894        86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQT----LIDIMDRARKL  154 (161)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHH
Confidence            456667777777788899999998876666555555555555555554       5677777776    34567777776


Q ss_pred             H
Q 004063          517 A  517 (776)
Q Consensus       517 A  517 (776)
                      +
T Consensus       155 ~  155 (161)
T TIGR02894       155 A  155 (161)
T ss_pred             H
Confidence            5

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17

Probab=82.75  E-value=68  Score=33.81  Aligned_cols=134  Identities=14%  Similarity=0.198  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHH-H-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV-V-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRL  504 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~-v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~  504 (776)
                      +.+.++-.-.-.=++.+|++++.+.+..+-+-.. +           ..+-.+.+.++.++......|+..+..|+.+-.
T Consensus        63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack  142 (253)
T cd07676          63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK  142 (253)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444556677777776666543211 1           112234567788888888888888999999888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhh-----hhHHHHHHHHH
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ  573 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER-----~~l~stIdaLQ  573 (776)
                      +...|..+.....+....=..++.++|..--+...+++..+   ..|..++.-+.+.-     ..|-..++.||
T Consensus       143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ  213 (253)
T cd07676         143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQ  213 (253)
T ss_pred             HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            88888876654433211111122222222222222333322   33444444443332     44777888888

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.

>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases

Probab=82.68  E-value=6.1  Score=42.53  Aligned_cols=50  Identities=22%  Similarity=0.298  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063          507 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  556 (776)
Q Consensus       507 n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s  556 (776)
                      ..+.++.+....++..|++++..|+..-=+..++...+..++..+..++.
T Consensus       231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~  280 (344)
T PF12777_consen  231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE  280 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33333333444444444444444433333333333334444444444333

The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.

>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30

Probab=82.66  E-value=57  Score=32.84  Aligned_cols=40  Identities=10%  Similarity=0.103  Sum_probs=23.9

Q ss_pred             ccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 004063          414 YSTKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESL  453 (776)
Q Consensus       414 ~s~~~~~~faaLqqhIeDLT~EKfa----LqR~L~~s~~l~EsL  453 (776)
                      --+..+.+|..+...|+.|..-==.    .+|-+.+.++++..+
T Consensus         8 ~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~   51 (200)
T cd07624           8 LLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDEL   51 (200)
T ss_pred             hhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677899999999888643222    234444444444444

BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.

>PRK10698 phage shock protein PspA; Provisional

Probab=82.63  E-value=64  Score=33.40  Aligned_cols=15  Identities=20%  Similarity=0.488  Sum_probs=8.6

Q ss_pred             hHHHHHHHHHHHhHH
Q 004063          701 NNELSRKLEHQTQRL  715 (776)
Q Consensus       701 N~ELsRKLE~qtQRL  715 (776)
                      ..++..+|+.++.++
T Consensus       203 ~~~ve~ELa~LK~~~  217 (222)
T PRK10698        203 DDEISEQLAALKAKM  217 (222)
T ss_pred             cchHHHHHHHHHHHh
Confidence            345666666666553

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=82.61  E-value=64  Score=33.45  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhH-HHHHHHHHhhhhc
Q 004063          664 RMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR-LELLTAQNMANEN  727 (776)
Q Consensus       664 R~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQR-LELltsq~m~~e~  727 (776)
                      .+..+|...|.+....=..|..+|..+.....+..++|..-...|+..+.+ .++..-+.++.+.
T Consensus       178 ~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~  242 (264)
T PF06008_consen  178 SLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSET  242 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445889999999999989999999999988888888988888888765544 3444444454433

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=82.36  E-value=60  Score=38.90  Aligned_cols=18  Identities=28%  Similarity=0.383  Sum_probs=10.3

Q ss_pred             ccchhhHHHHHhhHHHHHHHHH
Q 004063          656 VNIPHDQMRMIHNINALISELA  677 (776)
Q Consensus       656 ~~Ip~DQlR~IdsInaLisELa  677 (776)
                      --||    |.|+-|-..+.++.
T Consensus       419 Giip----ral~~lF~~~~~~~  436 (670)
T KOG0239|consen  419 GIIP----RALEKLFRTITSLK  436 (670)
T ss_pred             CccH----HHHHHHHHHHHhhc
Confidence            4567    66666655555443

>KOG0244 consensus Kinesin-like protein [Cytoskeleton]

Probab=82.30  E-value=37  Score=41.95  Aligned_cols=97  Identities=20%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 004063          456 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL  535 (776)
Q Consensus       456 ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL  535 (776)
                      +|..++.+ +.....|.-||.++++|+.++....  -..                     +.+|+..|-+++.++-+..=
T Consensus       318 knk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~--~~~---------------------~~~ei~sl~~e~~~l~~~~d  373 (913)
T KOG0244|consen  318 KNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA--GDE---------------------LDAEINSLPFENVTLEETLD  373 (913)
T ss_pred             cccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc--ccc---------------------chhHHhhhhhhhhhhhhhHH
Confidence            45555554 5566667777777777777654443  000                     33334333333333333322


Q ss_pred             hhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          536 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       536 KleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      ++..+.....+.+.+--.+..-.+++++.++.+++.+++.+
T Consensus       374 ~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~  414 (913)
T KOG0244|consen  374 ALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLL  414 (913)
T ss_pred             HHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            33333334444445555666677888888888888777554

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.29  E-value=49  Score=34.84  Aligned_cols=31  Identities=23%  Similarity=0.402  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      ..+.+++.+|+.|.+|..++.-+|-.+...+
T Consensus        32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DI   62 (230)
T PF10146_consen   32 KCLEEYRKEMEELLQERMAHVEELRQINQDI   62 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666555555555544443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins

Probab=82.24  E-value=66  Score=33.31  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE  491 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~  491 (776)
                      ..|..+...-....+.+|..+..+....|+-...+..|..+|++.+..+..+...
T Consensus        61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k  115 (234)
T cd07652          61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR  115 (234)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            4677777777888888888888888888877777777778887777766555443

F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=82.21  E-value=29  Score=35.07  Aligned_cols=57  Identities=14%  Similarity=0.255  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHH--------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063          444 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  500 (776)
Q Consensus       444 ~~s~~l~EsLa~ENsaLt~~--------------yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  500 (776)
                      ..-.++.++|.+|+=--+++              .++....+..|+.+++.++.+|..-...++..+.+|.
T Consensus        30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~  100 (188)
T PF03962_consen   30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGRE  100 (188)
T ss_pred             hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            44578899999987554443              4455555556666666665555544444444444443

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=82.17  E-value=54  Score=36.08  Aligned_cols=26  Identities=31%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             HHHhHHHHHHhHHHHHHHHHHHhHHH
Q 004063          691 LAQSSKLKDLNNELSRKLEHQTQRLE  716 (776)
Q Consensus       691 sr~~~dLk~lN~ELsRKLE~qtQRLE  716 (776)
                      +.-++.||.+|-||..|..++..||-
T Consensus       277 s~l~dQLK~qNQEL~ski~ELE~rLq  302 (307)
T PF10481_consen  277 SQLLDQLKAQNQELRSKINELELRLQ  302 (307)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            44578999999999999999888874

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=81.92  E-value=1.1e+02  Score=35.78  Aligned_cols=25  Identities=32%  Similarity=0.324  Sum_probs=14.2

Q ss_pred             CCCcccccCCcc-ccccccCCCCCCC
Q 004063          301 ATNKFTLGKSRA-SFLDSLNVPRASS  325 (776)
Q Consensus       301 ~~~et~~~rSRp-SFLDSlnV~Ra~~  325 (776)
                      +.-+++.+-+-| |||.-=||.|--.
T Consensus       192 ~a~esaLn~~QpqSFl~~en~~~~ve  217 (527)
T PF15066_consen  192 TAKESALNPSQPQSFLYKENVCRDVE  217 (527)
T ss_pred             hhhhhccCCCCCcchhhhcccccccc
Confidence            333444444443 6888777776554

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.57  E-value=1.5e+02  Score=36.95  Aligned_cols=86  Identities=17%  Similarity=0.289  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH----------HHHHHHHHHHHHHHhHhhhhHHH
Q 004063          471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA----------SEVIGLEEKALRLRSNELKLERQ  540 (776)
Q Consensus       471 v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA----------aEVV~LEek~lqLRS~eLKleKE  540 (776)
                      ..+|+-+.|+|+.+++-+...-.+++.+++..+-++..+..-...+.          .|.-.+..+..++.-++--+.++
T Consensus       680 ~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~  759 (970)
T KOG0946|consen  680 EKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLTKE  759 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555566666655555553332222222          23333344444444344444555


Q ss_pred             hhhhHHHHHHHHHHHH
Q 004063          541 LENSQSEISSYKKKIS  556 (776)
Q Consensus       541 lE~l~~Er~S~~~q~s  556 (776)
                      +++...-+.+..+..+
T Consensus       760 L~k~~~~~es~k~~~~  775 (970)
T KOG0946|consen  760 LNKKNADIESFKATQR  775 (970)
T ss_pred             HHhhhHHHHHHHHHHh
Confidence            5544444455444444

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=81.55  E-value=85  Score=35.00  Aligned_cols=39  Identities=21%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          492 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL  530 (776)
Q Consensus       492 le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqL  530 (776)
                      ++.+..||..++.++.++.++-+.+..-|-.+..++.++
T Consensus       268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I  306 (359)
T PF10498_consen  268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI  306 (359)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            466677888888888888888888877777666665543

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=81.51  E-value=9.5  Score=40.22  Aligned_cols=42  Identities=26%  Similarity=0.391  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH-------HHHHHHh
Q 004063          544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM-------MQSKLRK  585 (776)
Q Consensus       544 l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl-------LqSKLR~  585 (776)
                      +...|++++++...++.|-..+..++..||.|.+.       |..|+|=
T Consensus        84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy  132 (248)
T PF08172_consen   84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRY  132 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788888887777777777777777666654       4557773

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein

Probab=81.49  E-value=8.9  Score=34.21  Aligned_cols=51  Identities=22%  Similarity=0.258  Sum_probs=38.7

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ++-+..+||.+--..++||.-.--+.+...+=+--+.|||++.+..+..||
T Consensus        20 ~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l~   70 (70)
T PF08606_consen   20 LMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAELQ   70 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhcC
Confidence            333445566666666788888777788888888889999999998887765

The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=81.46  E-value=20  Score=42.66  Aligned_cols=68  Identities=24%  Similarity=0.431  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHh---HhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Q 004063          518 SEVIGLEEKALRLRS---NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSI  593 (776)
Q Consensus       518 aEVV~LEek~lqLRS---~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~asa~gKa~  593 (776)
                      +|+..|+++|-++|-   .+++-.++++.+..++..+++++.--.+.+.+|...++.|.        |+|.+...|+..
T Consensus       450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~--------k~~~lE~sG~g~  520 (652)
T COG2433         450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR--------KMRKLELSGKGT  520 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhcCCCc
Confidence            555666666655543   34455667777777777777777755544444444433332        355555566653

>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal

Probab=81.34  E-value=11  Score=35.09  Aligned_cols=81  Identities=22%  Similarity=0.337  Sum_probs=46.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 004063          418 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK  486 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfa-----------LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~  486 (776)
                      ..-||++||.||..+|-=++.           +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|+..++
T Consensus        25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~  104 (118)
T PF13815_consen   25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK  104 (118)
T ss_pred             hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999977643322           223344445555555555555555555555555555555555555555


Q ss_pred             HHHHHhhhhHHH
Q 004063          487 VQLVELESFRNE  498 (776)
Q Consensus       487 aQ~~~le~l~aE  498 (776)
                      .+..++..++.|
T Consensus       105 ~~~~~~k~lk~E  116 (118)
T PF13815_consen  105 KQKEEIKKLKKE  116 (118)
T ss_pred             HHHHHHHHHHHh
Confidence            555555555444

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=81.32  E-value=36  Score=37.25  Aligned_cols=7  Identities=14%  Similarity=0.145  Sum_probs=3.9

Q ss_pred             hccCCCc
Q 004063          586 ASGSGKS  592 (776)
Q Consensus       586 asa~gKa  592 (776)
                      ++..|.+
T Consensus       220 AP~dG~V  226 (390)
T PRK15136        220 SPMTGYV  226 (390)
T ss_pred             CCCCeEE
Confidence            5555654

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=81.17  E-value=44  Score=30.55  Aligned_cols=52  Identities=23%  Similarity=0.269  Sum_probs=23.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063          466 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA  517 (776)
Q Consensus       466 qQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA  517 (776)
                      .+...+..+...+.+-+.++......|..-...|+....++.+-..||..-+
T Consensus        18 ~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a   69 (126)
T PF13863_consen   18 TKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRA   69 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3333344444444444444444444444444455555555554444444333

>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others

Probab=81.01  E-value=47  Score=31.28  Aligned_cols=46  Identities=13%  Similarity=0.259  Sum_probs=33.3

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004063          457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV  502 (776)
Q Consensus       457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaA  502 (776)
                      .+.+...|+.-......|+...+.++.+++....++..+..++...
T Consensus        24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~   69 (158)
T PF03938_consen   24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ   69 (158)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777888888888887777777777776666654

OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.

>TIGR00618 sbcc exonuclease SbcC

Probab=80.96  E-value=1.5e+02  Score=36.62  Aligned_cols=27  Identities=11%  Similarity=0.126  Sum_probs=11.8

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 004063          497 NEYANVRLECNAADERAKILASEVIGL  523 (776)
Q Consensus       497 aErDaAq~E~n~A~ERaK~LAaEVV~L  523 (776)
                      .+.......+..+..+...+..+...+
T Consensus       386 ~~~~~~~~~~~~~~~~l~~l~~~~~~~  412 (1042)
T TIGR00618       386 QQKTTLTQKLQSLCKELDILQREQATI  412 (1042)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.72  E-value=1.4e+02  Score=35.94  Aligned_cols=128  Identities=16%  Similarity=0.213  Sum_probs=76.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK  526 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v-~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek  526 (776)
                      +--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-...||...+-....--+|-.+..---+.|+.+
T Consensus       559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~  638 (741)
T KOG4460|consen  559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR  638 (741)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333444455555666676666555 5789999999999999999998888887765444443344443333334567778


Q ss_pred             HHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063          527 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM  578 (776)
Q Consensus       527 ~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl  578 (776)
                      |.+||+.-=   .++-.+...-.-+.+++..|-++=++|+..||++.--++.
T Consensus       639 ~~~L~~~~~---~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~K  687 (741)
T KOG4460|consen  639 MKKLLHSFH---SELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDK  687 (741)
T ss_pred             HHHHHhccc---ccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            888876311   1111222222335566666666666667777666644433

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=80.62  E-value=42  Score=35.29  Aligned_cols=28  Identities=14%  Similarity=0.230  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhccCCCcc
Q 004063          566 QSTIEALQEEKKMMQSKLR----KASGSGKSI  593 (776)
Q Consensus       566 ~stIdaLQEEKklLqSKLR----~asa~gKa~  593 (776)
                      ...++.++.+.+.++.+|.    .++-.|.+.
T Consensus       184 ~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~  215 (331)
T PRK03598        184 KASLAQAQAALAQAELNLQDTELIAPSDGTIL  215 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCEEECCCCeEEE
Confidence            3444445555555555554    355666653

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=80.11  E-value=1.2e+02  Score=35.42  Aligned_cols=18  Identities=28%  Similarity=0.434  Sum_probs=13.0

Q ss_pred             ccccccCCCCCccccccc
Q 004063          187 DFVTKISPQNSVSTLFQS  204 (776)
Q Consensus       187 ~~~~~is~q~s~~~~~q~  204 (776)
                      -|.++-.|.-+..|-.|+
T Consensus        12 ~F~Ny~gp~~~~~t~~~i   29 (489)
T PF05262_consen   12 EFINYSGPHASIETAQQI   29 (489)
T ss_pred             EEEecCCCCcchhHHHHH
Confidence            577777777777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	776
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-10
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-09
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	3e-08
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	4e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	9e-07
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	1e-06
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	2e-05
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	5e-04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	9e-08
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	2e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	4e-05
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	4e-05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	5e-05
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	9e-05
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.0 bits (191), Expect = 6e-15
 Identities = 67/528 (12%), Positives = 142/528 (26%), Gaps = 156/528 (29%)

Query: 361 MEKETTGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRL-----GSNESSIENQHGFYS 415
           ++       SK    +I      + +    +       RL        E  ++    F  
Sbjct: 38  VQDMPKSILSKEEIDHI------IMSKDAVSG----TLRLFWTLLSKQEEMVQK---FVE 84

Query: 416 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-SVVNQL 474
                ++  L   I+   ++   + R     R   + L  +N      YN  R     +L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAK-YNVSRLQPYLKL 140

Query: 475 KSEMEKLQEEIKV----------QLVELESFRNE-----------YANVRLECNAADERA 513
           +  + +L+    V            V L+   +            + N++  CN+ +   
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVL 199

Query: 514 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ---------- 563
           ++L      L     ++  N         N +  I S + ++  L K +           
Sbjct: 200 EMLQK----L---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 564 ----------DFQSTI----------EAL--QEEKKMMQSKLRKASGSGKSID-FGKTAA 600
                     +    I          + L       +            +      K   
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--- 309

Query: 601 STVNASTSTEDL-----------------AITD--TTLDNSNQDTHDDASLPR-IDASGS 640
                    +DL                 +I D   T DN      D   L   I++S +
Sbjct: 310 ---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK--LTTIIESSLN 364

Query: 641 TLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALE------KEELVQALSSELAQS 694
            L P   R   + L+V  P           A I  + L        +  V  + ++L + 
Sbjct: 365 VLEPAEYRKMFDRLSV-FPPS---------AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 695 SKLKDLNNELSRKLEHQTQRLELLTAQNMA--NENI--SFRQPDSASTHD---------- 740
           S ++    E +  +         +  +N    + +I   +  P +  + D          
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 741 --HTAY----ADEGDEVVE--RV---LGWI-MKLFPGGPSRRRTSKLL 776
             H  +     +  + +     V     ++  K+     +   +  +L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 2e-11
 Identities = 93/709 (13%), Positives = 194/709 (27%), Gaps = 265/709 (37%)

Query: 8   DFSLHDQHHLEADRVRV------TDLDGAGTSDGPDKAVVSLPLVMH-----NDDNKALK 56
           DF   +  +   D + V       + D     D P K+++S   + H     +  +  L+
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVSGTLR 66

Query: 57  L-----AQQSQQVSLSDKRINSNCFENDLNSSSAYLAQTYSNNQETSGSAGPVNVSNSQE 111
           L     ++Q + V    ++      E  L  +  +L                       E
Sbjct: 67  LFWTLLSKQEEMV----QKF----VEEVLRINYKFLMSPIKT-----------------E 101

Query: 112 TKDVNNDFVIYSSGQGRLRDGIMSNQFLSLLPEASQDYDSSNSSKSGFQGIEESQSKGND 171
            +  +    +Y   + RL +                                      N 
Sbjct: 102 QRQPSMMTRMYIEQRDRLYND-------------------------------------NQ 124

Query: 172 SFPKVPTLVNSGPSHDFVTKISPQNSVST-LFQSKPSNAIAL----GNG----------- 215
            F K             V+++ P   +   L + +P+  + +    G+G           
Sbjct: 125 VFAK-----------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 216 HSFHSSSEGTAH-LTTSTGGSASEV-----GLNTPSTTNFSDPVSFNTGEGKPSNSASGL 269
           +      +     L      S   V      L      N++     ++      +S    
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 270 AS--LQSTPFKRS-------------EYSGYNFD------------------AGNSFNHV 296
               L+S P++                     F+                  +  +  H+
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 297 PVSSATNKFTLGKSRASFLDSLNV-------------PRASS--GTL----------FEQ 331
            +   +   T  + ++  L  L+              PR  S               ++ 
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 332 TEPERDSFMSSSSLNSMDVLGSSPAQNPSMEK---ETTGAFSKTTTSNIPSA------FD 382
              ++ + +  SSLN ++         P+  +   +    F  +   +IP+       FD
Sbjct: 350 VNCDKLTTIIESSLNVLE---------PAEYRKMFDRLSVFPPSA--HIPTILLSLIWFD 398

Query: 383 YLGNPTVSTSDRGDIRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRS 442
                 V  SD   +       S +E        K  ++       I  +  E   L+  
Sbjct: 399 ------VIKSDVMVVVNKLHKYSLVE--------KQPKESTI---SIPSIYLE---LKVK 438

Query: 443 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE--------------MEKLQEEIKVQ 488
           LE   AL       + S+ D YN  ++  +                   ++ ++   ++ 
Sbjct: 439 LENEYAL-------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 489 LVELESFRNEYANVR-LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 547
           L     FR  + + R LE        KI           A     + L   +QL+  +  
Sbjct: 492 L-----FRMVFLDFRFLE-------QKIRHDST------AWNASGSILNTLQQLKFYKPY 533

Query: 548 IS----SYKKKISSLEKERQDFQSTIEA---LQEEKKMMQSKLRKASGS 589
           I      Y++ ++++     DF   IE      +   +++  L     +
Sbjct: 534 ICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 1e-06
 Identities = 52/351 (14%), Positives = 96/351 (27%), Gaps = 129/351 (36%)

Query: 408 ENQHGF------YSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLT 461
           E+Q+ +      +     ++F    + ++D+ +   +     E    +            
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILS---KEEIDHIIMSK--------- 58

Query: 462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY----ANVRLECNAADERAKILA 517
           D+ +    +   L S+    QEE+  + VE E  R  Y    + ++ E            
Sbjct: 59  DAVSGTLRLFWTLLSK----QEEMVQKFVE-EVLRINYKFLMSPIKTEQR---------- 103

Query: 518 SEVIGLEEKALRLRSNELKLERQLENSQSEISSY----KKKISSLEKERQDFQSTIEALQ 573
                  + ++  R    + +R L N     + Y     +    L +          AL 
Sbjct: 104 -------QPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQ----------ALL 145

Query: 574 EEKKMMQSKLRKAS--------GSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 625
           E        LR A         GSGK+                   +A+ D  L    Q 
Sbjct: 146 E--------LRPAKNVLIDGVLGSGKTW------------------VAL-DVCLSYKVQC 178

Query: 626 THDDA----SLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKE 681
             D      +L                        N P   + M+  +   I        
Sbjct: 179 KMDFKIFWLNL--------------KN-------CNSPETVLEMLQKLLYQIDP------ 211

Query: 682 ELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTAQNMANENI--SF 730
                         ++  +  EL R L+ +     LL   N+ N     +F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.9 bits (184), Expect = 7e-14
 Identities = 58/325 (17%), Positives = 114/325 (35%), Gaps = 46/325 (14%)

Query: 422  FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV---------- 471
               LEQ    L +EK  LQ  L+A   L          L     +   ++          
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEE 939

Query: 472  ----NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 527
                 QL++E +K+Q+++     +LE        ++LE   AD + K +  +++ +E++ 
Sbjct: 940  EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999

Query: 528  LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL-----QEEKKMMQSK 582
             +L      LE ++ +  + ++  ++K  +L K +   +S I  L     +EEK   + +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059

Query: 583  LRKASGSGKSIDFGKTAASTVNASTSTED-LAITDTTLDNSNQDTHDDASLPRIDASGST 641
              K    G+S D  +  A         +  LA  +  L  +     D+ S          
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN------- 1112

Query: 642  LLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLN 701
                               + ++ I  + + IS+L  + E    A +    Q   L +  
Sbjct: 1113 -------------------NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153

Query: 702  NELSRKLEHQTQRLELLTAQNMANE 726
              L  +LE              ++ 
Sbjct: 1154 EALKTELEDTLDTTATQQELRGSDY 1178

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 72.6 bits (178), Expect = 3e-13
 Identities = 25/171 (14%), Positives = 63/171 (36%)

Query: 416  TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 475
             K   +    +  I+ +  +   ++          + L    S LT +  ++      L 
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 476  SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 535
                K +  I    V L+        +       +  +  L  ++  L+ +   L++   
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

Query: 536  KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            K E +L+ + + +     + ++  K+ ++ +S I  LQE+ +  ++   KA
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.7 bits (168), Expect = 5e-12
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 397  IRRLGSNESSIENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE 456
            I+++  +   +E+Q+     K  ++   LE+ + DLT      +   +    L     + 
Sbjct: 985  IKKMEDDILIMEDQN----NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 457  NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 516
             S L     ++     +L+    KL+ E      ++   + + A ++ +    +E  +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 517  ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE- 575
             + +     +         +LE  + + Q ++ S K   +  EK+++D    +EAL+ E 
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160

Query: 576  -----KKMMQSKLRK 585
                     Q +LR 
Sbjct: 1161 EDTLDTTATQQELRG 1175

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 7e-11
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 3/161 (1%)

Query: 419  NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
             E    L +           L+  L+      + L      L    +     + +L++++
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 479  EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538
             +L+ ++  +  EL++      +   + N A ++ + L S +  L+E     ++   K E
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 539  RQLENSQSEISSYKKKISSLEKE---RQDFQSTIEALQEEK 576
            +Q  +   E+ + K ++         +Q+ + +     ++K
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 53/324 (16%), Positives = 113/324 (34%), Gaps = 36/324 (11%)

Query: 415  STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQL 474
             T+  E+  A ++ ++   + +   +  L+        L  E + L     ++     +L
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ----EKLQAETEL 907

Query: 475  KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 534
             +E E+++  +  +  ELE   +E             R +        L+ +  +++   
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEME----------ARIEEEEERSQQLQAEKKKMQQQM 957

Query: 535  LKLERQLE-------NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
            L LE QLE         Q E  +   KI  +E +    +     L +E+K+++ ++   +
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 588  GSGKSIDFGKTAASTVNAS--TSTEDLAITDTTLDNSNQDTHD------------DASLP 633
             +    +      + +     +   +L +     + S Q+                  + 
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077

Query: 634  RIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNI-NALISELALEKEELVQALSSELA 692
             + A  + L  +  +   E  A     +      N     I EL     +L + L SE A
Sbjct: 1078 ELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKA 1137

Query: 693  QSSKLKDLNNELSRKLEHQTQRLE 716
              +K +    +LS +LE     LE
Sbjct: 1138 ARNKAEKQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 58.7 bits (142), Expect = 7e-09
 Identities = 52/312 (16%), Positives = 110/312 (35%), Gaps = 27/312 (8%)

Query: 432  LTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 491
            L      L +       +      E     +   +  + + +L+ +  +L EE  +   +
Sbjct: 842  LFFXIXPLLKVTRQEEEMQA-KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900

Query: 492  LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 551
            L++    YA        A+E    LA++   LEE    + +   + E + +  Q+E    
Sbjct: 901  LQAETELYAE-------AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953

Query: 552  KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID------------FGKTA 599
            ++++  LE++ ++ ++  + LQ EK     K++K       ++              +  
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERV 1013

Query: 600  ASTVNASTSTEDLAITDTTLDNSNQDTHDD--ASLPRIDASGSTLLPESGRLALEG---L 654
            +         E+ A   T L N ++    +    L + + S   L  E  +  LEG    
Sbjct: 1014 SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQEL--EKIKRKLEGESSD 1071

Query: 655  AVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQR 714
                  +    I  + A +++   E +  +  L  E +Q +       EL   +    + 
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131

Query: 715  LELLTAQNMANE 726
            LE   A     E
Sbjct: 1132 LESEKAARNKAE 1143

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 25/159 (15%), Positives = 57/159 (35%), Gaps = 12/159 (7%)

Query: 425  LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484
            L++ I++  +E  +L   +        +   +  S  +             + +  LQEE
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992

Query: 485  IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 544
            I     EL   + E   +    +      + L SE   L+E+   L++ + +L R++ + 
Sbjct: 993  IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE---LKEQNTLLKTEKEELNRRIHDQ 1049

Query: 545  QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583
              EI+         E   +      + L+ +    + + 
Sbjct: 1050 AKEIT---------ETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 24/149 (16%), Positives = 54/149 (36%), Gaps = 3/149 (2%)

Query: 438  ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 497
               RS+E  + L   L  +   L    ++Q      L  +M  L+     +  +L S   
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 498  EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 557
                   E   A  R   L  E+  L ++  + ++ +  +E   +  + E    ++ +S 
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET---EQLVSE 1027

Query: 558  LEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            L+++    ++  E L         ++ + 
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITET 1056

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 12/164 (7%)

Query: 423  AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 482
              LE  I  L ++       ++      +SL  + ++L  +Y+ +   +      +   +
Sbjct: 924  IGLENKIMQLQRK-------IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976

Query: 483  EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 542
            EE K     + S + E A +R E +      K +       + +         +L+ Q  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNT 1033

Query: 543  NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
              ++E     ++I    KE  +     + L EE K ++  L   
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETME--KKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.7 bits (137), Expect = 3e-08
 Identities = 39/242 (16%), Positives = 82/242 (33%), Gaps = 35/242 (14%)

Query: 480  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539
             +Q+ ++  L  +   R   A V L+C      AK    ++        R +   + LE 
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN 928

Query: 540  QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTA 599
            ++   Q +I    K+  SL ++  + + T     E+ +    +LR +          +  
Sbjct: 929  KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS--------EEEAK 980

Query: 600  ASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIP 659
             +T    +  E++A     L  +  +                         +E  A    
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKT----------------------IEEWADKYK 1018

Query: 660  HDQMRMIHNINALISELALEKEELVQALSSEL-----AQSSKLKDLNNELSRKLEHQTQR 714
            H+  +++  +    + L  EKEEL + +  +          KL +   +L   L  +  R
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

Query: 715  LE 716
             +
Sbjct: 1079 YQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 426  EQHIEDLTQEKFALQRSLEASRALSE--SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483
              H     +    LQ       A  E   L  E  S+     + + +   L++++ +LQ 
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV----ERYKKLHIGLENKIMQLQR 935

Query: 484  EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543
            +I  Q  E +S   +  N  LE   + E  K+ +       E+             ++ +
Sbjct: 936  KIDEQNKEYKSLLEKMNN--LEITYSTETEKLRS-----DVERLRMSEEEAKNATNRVLS 988

Query: 544  SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
             Q EI+  +K++   + E++  +   +  + E + + S+L++ 
Sbjct: 989  LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 423  AALEQHIEDLTQEKFALQRSLEASRALSE---SLAAENSSLTDSYNQQRSVVNQLKSEME 479
                   E L  +   L+ S E ++  +    SL  E + L    +Q ++    ++   +
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWAD 1015

Query: 480  KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539
            K + E +  + EL+    +   ++ E    + R    A E+    EK L   + +L+L+ 
Sbjct: 1016 KYKHETEQLVSELKE---QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072

Query: 540  QLENSQSE 547
              E  + +
Sbjct: 1073 NDERLRYQ 1080

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 23/171 (13%), Positives = 66/171 (38%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           +  E  A   Q +E+  +     +R ++   + ++    +         + + +      
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           + E++  ++ +   +LE           +C   +E  K + + +  LE +A +    E K
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDK 220

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
            E +++    ++   + +    E+     + +I+ L++E    + K +  S
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS 271

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 24/168 (14%), Positives = 64/168 (38%)

Query: 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
            E     E+   D   +  +L R ++      +      ++      +     ++ +  M
Sbjct: 68  QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGM 127

Query: 479 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538
           + ++   +    ++E    +    +     AD + + +A +++ +E    R        E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187

Query: 539 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            +    + EI +    + SLE + + +    +  +EE K++  KL++A
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 20/158 (12%), Positives = 60/158 (37%)

Query: 429 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 488
           ++ + ++   L+   E +   ++   A+  +  D   Q    +  L+ +++  ++E+   
Sbjct: 1   MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60

Query: 489 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 548
              L+  + +      +   A+     L   +   EE+  R +       ++LE ++   
Sbjct: 61  SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120

Query: 549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
              ++ +  +E   Q  +  +E  + + K  +     A
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDA 158

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 21/173 (12%), Positives = 61/173 (35%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           +  ++  +L++ ++    E      +L+ ++   E    + +            +   + 
Sbjct: 38  QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           E+++ QE +   L +LE                + RA+    ++   E +    +     
Sbjct: 98  ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 589
            +R+ E    ++   +  +   E+  +  +     L+EE K + + L+     
Sbjct: 158 ADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQ 210

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 19/164 (11%), Positives = 64/164 (39%)

Query: 424 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 483
           A+++ ++ L  +K       + + A  ++    +  L D     +  +   + E++K  E
Sbjct: 3   AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSE 62

Query: 484 EIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLEN 543
            +K    +LE    +  +   +  + + R ++   E+   +E+         + E+  + 
Sbjct: 63  ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122

Query: 544 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
           S+  +   + +    E++ +  +  ++  +   +    K  + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVA 166

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 17/167 (10%), Positives = 60/167 (35%)

Query: 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 479
           ++     + ++D  ++    ++    + A   SL        +  ++ +  +     ++E
Sbjct: 55  DELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114

Query: 480 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539
           + ++        ++   +       +    + + K         + K   +    + +E 
Sbjct: 115 EAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIES 174

Query: 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            LE ++      + K + LE+E +   + +++L+ + +    K  K 
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKY 221

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 26/170 (15%), Positives = 64/170 (37%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           +   D  A E   + L  E  +LQ+ L+A+    +  +       +            ++
Sbjct: 24  EAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA 83

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           ++  L   I++   EL+  +   A    +   A++ A      +  +E +A +       
Sbjct: 84  DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            E QL+ ++       +K   + ++    +S +E  +E  ++ + K  + 
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL 193

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 18/168 (10%), Positives = 57/168 (33%)

Query: 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
            +     E+  ++  +    ++   +      E    +                ++  ++
Sbjct: 110 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKL 169

Query: 479 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538
             ++ +++      E    + A +  E        K L ++     +K  +       L 
Sbjct: 170 VIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLS 229

Query: 539 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 586
            +L+ +++     ++ ++ LEK   D +  + A + + K +  +L  A
Sbjct: 230 DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA 277

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 22/164 (13%), Positives = 60/164 (36%)

Query: 420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 479
           +     E+ ++ +       +  +E      +            Y +    +  ++S++E
Sbjct: 118 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177

Query: 480 KLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 539
           + +E  ++   +      E   V     + + +A+  + +    EE+   L     + E 
Sbjct: 178 RAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAET 237

Query: 540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 583
           + E ++  ++  +K I  LE E    +   +A+ EE     + +
Sbjct: 238 RAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 6/250 (2%)

Query: 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 531
           + +K +M+ L+ + +  L   +    +           ++    L  ++   E++  +  
Sbjct: 2   DAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYS 61

Query: 532 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 591
                 + +LE ++ + +  +  ++SL +  Q F+  ++  QE       KL +A    K
Sbjct: 62  EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAE---K 118

Query: 592 SIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLAL 651
           + D  +     + +    ++  +    +         + +  + +     L+     L  
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER 178

Query: 652 EGLAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQ 711
                            +   I  +    + L         +  K ++    LS KL+  
Sbjct: 179 AEERAE---LSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEA 235

Query: 712 TQRLELLTAQ 721
             R E     
Sbjct: 236 ETRAEFAERS 245

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 21/156 (13%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 417 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS 476
           K  E     E  +++         R  E        + ++     +          +L+ 
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           E++ +   +K    + E +  +           +E  K+L+ ++   E +A     +  K
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDK-------YEEEIKVLSDKLKEAETRAEFAERSVTK 248

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 572
           LE+ +++ + E+ + K K  ++ +E     + + ++
Sbjct: 249 LEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256

 Score = 53.2 bits (127), Expect = 9e-08
 Identities = 18/117 (15%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530
           ++ L+  + + ++++   L + E+      N+  E  A   +       +     K   +
Sbjct: 20  IDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI 79

Query: 531 RS--NELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
           +   +E+K ER+L +   E    K++ +   +E ++ Q+ I+   E+++ ++ ++ +
Sbjct: 80  QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLE 136

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 28/170 (16%), Positives = 67/170 (39%), Gaps = 11/170 (6%)

Query: 419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM 478
           NE  + L++ +E+          +    R     ++   S L     + +     L++  
Sbjct: 5   NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSK 64

Query: 479 EKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLE 538
            +  ++       LE+        R +     E    L + +  L+E+   L+ N  K+E
Sbjct: 65  SQTDKDYYQLQAILEA-------ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

Query: 539 RQLENSQSEISSYKKKISSLEKER----QDFQSTIEALQEEKKMMQSKLR 584
            + + +Q  ++  +K+ ++LE +     +  Q  +E    E K+ +++L 
Sbjct: 118 GERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKVTKARLT 167

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 20/111 (18%), Positives = 49/111 (44%)

Query: 477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK 536
           ++ +LQ++++     L +  +    +R       +    L S    L+E+   L +++ +
Sbjct: 7   KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66

Query: 537 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
            ++     Q+ + + ++      +   D Q+ I +LQEE K ++  L K  
Sbjct: 67  TDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVE 117

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Length = 129

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 16/115 (13%), Positives = 49/115 (42%)

Query: 471 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 530
           +  +K E  +L+E ++      +    +  ++  E N    + +     +   EE+  +L
Sbjct: 15  MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL 74

Query: 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
             N+++LE +++     +   ++  + L  +++  +     L+ +   ++  L K
Sbjct: 75  IKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAK 129

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 27/163 (16%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 425 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 484
           LE  +E+L  + + L+  +   + L E                       + +  +L+EE
Sbjct: 5   LEDKVEELLSKNYHLENEVARLKKLLERAEER--------------AELSEGKSAELEEE 50

Query: 485 IKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 544
           +K     L+S   +      + +  +E  K+L+ ++   E +A     +  KLE+ +++ 
Sbjct: 51  LKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110

Query: 545 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 587
           + E+ + K K  ++ +E +  +  +E L  +   +++++ +  
Sbjct: 111 EDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Length = 409

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 1/115 (0%)

Query: 472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 530
             +     K +     +L+E+E    +  N         +  K I  SE   L +   +L
Sbjct: 23  CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQL 82

Query: 531 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
                K+  ++   ++ I +++  I  L        + I  L+++   ++S  ++
Sbjct: 83  TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQE 137

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 7/139 (5%)

Query: 452 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 511
           SL  E +   +   + +    + + E+ + QE  +    ELE+   +      +  A ++
Sbjct: 7   SLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQ 66

Query: 512 RAKILASEVIGLEEKALRLRSNELK----LERQLENSQSEISSYKKKISSLEKERQDFQS 567
           R   L  EV  L+EK     +   K    LE  L  +++      K +  LE+   D + 
Sbjct: 67  R---LKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 123

Query: 568 TIEALQEEKKMMQSKLRKA 586
              A     +  + +L +A
Sbjct: 124 AKRATIMSLEDFEQRLNQA 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	776
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.41
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.31
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.3
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.09
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.49
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.24
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.16
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.16
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.15
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.01
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.91
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.6
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	96.47
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.4
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	95.68
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.62
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.61
3abh_A	312	Pacsin2, protein kinase C and casein kinase substr	95.4
2x3v_A	337	Syndapin I, protein kinase C and casein kinase sub	95.03
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.91
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.77
3aco_A	350	Pacsin2, protein kinase C and casein kinase substr	94.74
4dyl_A	406	Tyrosine-protein kinase FES/FPS; structural genomi	94.56
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	94.53
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	94.24
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.15
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	94.07
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	93.44
2v0o_A	276	FCHO2, FCH domain only protein 2; lipid-binding pr	93.16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	92.93
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	92.79
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.74
2efl_A	305	Formin-binding protein 1; EFC domain, structural g	92.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	92.3
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.0
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	91.65
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	91.23
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	91.05
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.05
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	90.46
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	90.31
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	90.02
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	89.96
3m3w_A	320	Pacsin3, protein kinase C and casein kinase II sub	89.82
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	89.43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	89.31
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	89.09
3i2w_A	290	Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt	88.04
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	87.61
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	86.74
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	86.44
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	85.2
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	85.19
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	85.07
3ibp_A	302	Chromosome partition protein MUKB; structural main	84.91
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	84.62
2i1j_A	575	Moesin; FERM, coiled-coil, C-ermad, ERM, radixin,	84.36
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	84.23
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	83.75
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	83.59
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	83.47
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	82.85
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.8
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	81.75
2wt7_B	90	Transcription factor MAFB; transcription, transcri	81.72
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	80.1
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	80.06

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.41  E-value=3.3e-07  Score=107.35  Aligned_cols=54  Identities=30%  Similarity=0.273  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHHHHH
Q 004063          667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLELLTA  720 (776)
Q Consensus       667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLELlts  720 (776)
                      ..+..-+.+|+.+.+++...|..+.....++.....+|.++|+.++++||-+-.
T Consensus      1112 ~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~ 1165 (1184)
T 1i84_S         1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLD 1165 (1184)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333344455555555555555555555666666667777777777777765433

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.31  E-value=1.7e-06  Score=101.40  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHhHHHH
Q 004063          667 HNINALISELALEKEELVQALSSELAQSSKLKDLNNELSRKLEHQTQRLEL  717 (776)
Q Consensus       667 dsInaLisELa~EReravsaLa~esr~~~dLk~lN~ELsRKLE~qtQRLEL  717 (776)
                      ..+..-+.+++.+.+.+...|........+++...++|..+++.+..+|+-
T Consensus      1084 ~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee 1134 (1184)
T 1i84_S         1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134 (1184)
T ss_dssp             ---------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444444444444455555555555555555444443

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.30  E-value=0.0021  Score=58.92  Aligned_cols=19  Identities=11%  Similarity=0.025  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 004063          424 ALEQHIEDLTQEKFALQRS  442 (776)
Q Consensus       424 aLqqhIeDLT~EKfaLqR~  442 (776)
                      +|+.-|+.+..+.-.|...
T Consensus        10 ~l~~~~~~~~~~~~~l~~~   28 (284)
T 1c1g_A           10 MLKLDKENALDRADEAEAD   28 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHH
Confidence            3444444443333333333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.09  E-value=0.006  Score=55.84  Aligned_cols=110  Identities=7%  Similarity=0.044  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004063          421 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA  500 (776)
Q Consensus       421 ~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErD  500 (776)
                      ....|+..|+++..+.-.+...+...+.-.+.+..+-..+....+.....+..+...+.+++.++......+..+..+..
T Consensus        21 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (284)
T 1c1g_A           21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELD  100 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555566666666666666666666666666665555566666666655555555555555555555


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          501 NVRLECNAADERAKILASEVIGLEEKALRL  530 (776)
Q Consensus       501 aAq~E~n~A~ERaK~LAaEVV~LEek~lqL  530 (776)
                      ....++..+.++...+..++..++.++..+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  130 (284)
T 1c1g_A          101 RAQERLATALQKLEEAEKAADESERGMKVI  130 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444444444444444444444333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.49  E-value=0.02  Score=56.99  Aligned_cols=128  Identities=13%  Similarity=0.145  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHH
Q 004063          427 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRL  504 (776)
Q Consensus       427 qhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l--~aErDaAq~  504 (776)
                      ..|+.|..++-.|...|+...+-...|.+.-.++...+......+..++.+++.++.-|+.....+.++  .-||++...
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            344555555555544444444444444444444444444444444444444444444444444444444  458888888


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHH
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK  554 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q  554 (776)
                      +...+..+...|..++..+++++-.++...-.++.+++.+..++...+++
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~  147 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESL  147 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888766555444555555544444433333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.24  E-value=0.024  Score=73.58  Aligned_cols=152  Identities=16%  Similarity=0.253  Sum_probs=102.1

Q ss_pred             cccccccCCchhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhhHHHHHHHH
Q 004063          409 NQHGFYSTKHNEDFAA-----LEQHIEDLTQEKFALQRSLEASRALSESLA-----------------AENSSLTDSYNQ  466 (776)
Q Consensus       409 ~~~~F~s~~~~~~faa-----LqqhIeDLT~EKfaLqR~L~~s~~l~EsLa-----------------~ENsaLt~~yNq  466 (776)
                      +-|+|.++..==+|=.     |.+..+++...+--|+.||+|=.+.+++++                 .|.+++...--.
T Consensus      1887 ~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A         1887 GRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778777666643     567778888888888888888665554443                 233444444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004063          467 QRSVVNQLKSEMEKLQEEIKVQLVELESF-----------------RNEYANVRLECNAADERAKILASEVIGLEEKALR  529 (776)
Q Consensus       467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l-----------------~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lq  529 (776)
                      ....+++-|..+++.+.++++|..+.+..                 +.+.+.|+.++.+|.++.+...+++..||+++.+
T Consensus      1967 ~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~ 2046 (3245)
T 3vkg_A         1967 DQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIAT 2046 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555556666666655555544443                 4566777888888888888888888888888888


Q ss_pred             HHhHhhhhHHHhhhhHHHHHHHHHHHHhHHH
Q 004063          530 LRSNELKLERQLENSQSEISSYKKKISSLEK  560 (776)
Q Consensus       530 LRS~eLKleKElE~l~~Er~S~~~q~ssi~k  560 (776)
                      |+.+-=++-+|.+.++.|++.+.+++..+++
T Consensus      2047 L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~ 2077 (3245)
T 3vkg_A         2047 YKEEYATLIRETEQIKTESSKVKNKVDRSIA 2077 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8777666666777777777777777665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.16  E-value=0.069  Score=53.12  Aligned_cols=131  Identities=11%  Similarity=0.112  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HhhhHHHH
Q 004063          434 QEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--LECNAADE  511 (776)
Q Consensus       434 ~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq--~E~n~A~E  511 (776)
                      .+-..|...+..-.+-.+.|.++-..+.+++..-...+..++.++.+++.+|..-...++..+.-.+++.  .++.+...
T Consensus        18 ~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~k   97 (256)
T 3na7_A           18 KEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNI   97 (256)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            3444444444444555666666666666666666666666666666666666665555555544444322  23444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063          512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD  564 (776)
Q Consensus       512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~  564 (776)
                      ....+..++..||++++++.-..=.++.+++.+..++...+.++..+..+++.
T Consensus        98 Eie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~  150 (256)
T 3na7_A           98 EEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVEN  150 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555554444444555555555555555555555444444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.16  E-value=0.014  Score=75.60  Aligned_cols=152  Identities=13%  Similarity=0.196  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------------HH
Q 004063          428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-----------------LV  490 (776)
Q Consensus       428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ-----------------~~  490 (776)
                      -|++|..|=-.++-.|++.++-++.+-.+-..=+...+++...|.+++.+++.-+.++++.                 +.
T Consensus      1935 ~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~ 2014 (3245)
T 3vkg_A         1935 QVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLRE 2014 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHH
Confidence            3444544444455555555555555555555555555666666665555555544444432                 24


Q ss_pred             HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063          491 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  570 (776)
Q Consensus       491 ~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId  570 (776)
                      +|+.+.+|.+.|+.++.++.+..+.|..++..|+++..++....-+++.+++.....+.++.+=+..+..|+..=...++
T Consensus      2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~ 2094 (3245)
T 3vkg_A         2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSE 2094 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence            56777777788888888888888888888888888877777777777777777777777888888877777777777777


Q ss_pred             HHHHHHHHH
Q 004063          571 ALQEEKKMM  579 (776)
Q Consensus       571 aLQEEKklL  579 (776)
                      .|+++.+.|
T Consensus      2095 ~l~~~~~~L 2103 (3245)
T 3vkg_A         2095 NFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777666544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.15  E-value=0.0033  Score=66.96  Aligned_cols=50  Identities=20%  Similarity=0.218  Sum_probs=24.1

Q ss_pred             HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004063          450 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY  499 (776)
Q Consensus       450 ~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aEr  499 (776)
                      ....+..++.+.+..|+....+..|+.++.+.++.++.+..+++..+.++
T Consensus       444 ~~~~~~~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~  493 (597)
T 3oja_B          444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRY  493 (597)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            33334466666666666666666666666666666666655555544433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.01  E-value=0.13  Score=50.15  Aligned_cols=156  Identities=19%  Similarity=0.211  Sum_probs=102.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063          419 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE  498 (776)
Q Consensus       419 ~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  498 (776)
                      ++-+..||.-|+||...=-+-..+.++.++..-.|......+       -..+.+|++.+-.|+....+-.-.+..|.+.
T Consensus         5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~-------E~~~rELq~~~~~L~~~k~~Leke~~~LQa~   77 (168)
T 3o0z_A            5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQL-------ESLNRELQERNRILENSKSQTDKDYYQLQAI   77 (168)
T ss_dssp             -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677888888887654444556666666655555444444       4444455555555555544444556777777


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063          499 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM  578 (776)
Q Consensus       499 rDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKkl  578 (776)
                      ++.=+..+..+.++.+.|..-|..|++++-++|..+-|++-+...|.+.+...+++..+++         || |-=|+|.
T Consensus        78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e---------id-~~~eLKa  147 (168)
T 3o0z_A           78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE---------ID-LNYKLKS  147 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HH-HHHHHHH
Confidence            7777788899999999999999999999999999999988888888877777777666552         11 1135666


Q ss_pred             HHHHHHhhccCCC
Q 004063          579 MQSKLRKASGSGK  591 (776)
Q Consensus       579 LqSKLR~asa~gK  591 (776)
                      ||.++-+=...++
T Consensus       148 lQ~~~eqE~~~H~  160 (168)
T 3o0z_A          148 LQQRLEQEVNEHK  160 (168)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            6666665433333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.91  E-value=0.013  Score=62.47  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=29.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Q 004063          463 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN  507 (776)
Q Consensus       463 ~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n  507 (776)
                      ...+....+++++.++.+|++++..+...+..+..+.++-+....
T Consensus       450 ~~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~  494 (597)
T 3oja_B          450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR  494 (597)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence            334444577777788888888887777777777777777655544

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.60  E-value=0.051  Score=64.38  Aligned_cols=37  Identities=16%  Similarity=0.085  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLR  531 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLR  531 (776)
                      ...+....+.+..+.++....+..|...||+++.++.
T Consensus       982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A          982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444455444443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=96.47  E-value=0.072  Score=52.61  Aligned_cols=98  Identities=15%  Similarity=0.230  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          483 EEIKVQLVELESFRNEYANVRLECNAADERAKILASE----VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       483 ~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaE----VV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      .+|.-.......++.+|+.++.++++=.+-+|.|-+|    +..+|.++..|++..-++..       |+++++.+|...
T Consensus        10 ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~-------E~e~~k~K~~~~   82 (189)
T 2v71_A           10 EETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY-------EVEALKEKLEHQ   82 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            3444444455566667777788888888888877655    45566666666555555444       445555555544


Q ss_pred             HHh----hhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063          559 EKE----RQDFQSTIEALQEEKKMMQSKLRKAS  587 (776)
Q Consensus       559 ~kE----R~~l~stIdaLQEEKklLqSKLR~as  587 (776)
                      .++    =..|+..|..|++++..|+.+||.+.
T Consensus        83 ~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE  115 (189)
T 2v71_A           83 YAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE  115 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444    44677788888899999999999553

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.40  E-value=0.068  Score=63.35  Aligned_cols=69  Identities=16%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          502 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       502 Aq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      ...|..++.++.+.|..|+..|++++.++...--.++...+.++   +....++..+++|-..|+..++.|.
T Consensus       975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555544333222222222232   2333555555555555555555544

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=95.68  E-value=0.6  Score=50.11  Aligned_cols=102  Identities=15%  Similarity=0.120  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hH-------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RS-------------------VVNQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~-------------------~v~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      .|..+...-..-++.+|..+..+......+ -.                   .-..++..+++++++++.+...|+..+.
T Consensus        78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk  157 (486)
T 3haj_A           78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  157 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555666777777766666322 11                   1344555677888888888888999999


Q ss_pred             HHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHH
Q 004063          498 EYANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLER  539 (776)
Q Consensus       498 ErDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleK  539 (776)
                      .|..+-.+...|..+.+..       ..++..++.++.+.+..--++++
T Consensus       158 ~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~  206 (486)
T 3haj_A          158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKE  206 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888888887665553       24555555555544443333333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.62  E-value=0.6  Score=42.72  Aligned_cols=59  Identities=14%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          523 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       523 LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      .|+++-+|......++..+..+.............++.++..++..+..|.+....+..
T Consensus        67 ~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~  125 (129)
T 2fxo_A           67 AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL  125 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555555566666666666666666666666655543

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.61  E-value=0.37  Score=42.77  Aligned_cols=97  Identities=18%  Similarity=0.270  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  548 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er  548 (776)
                      +-|..+|.+|..|+.+       .+.....++.+...+-.+..++..+-.||..|..|+..+       +.+++.+....
T Consensus         2 ~~MdaIKkKm~~lk~e-------~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l-------E~eld~~ee~L   67 (101)
T 3u1c_A            2 GHMDAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT-------EDSRDQVLEEL   67 (101)
T ss_dssp             CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            4578888888666554       233344444444555555555555566666665555533       66777777777


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklL  579 (776)
                      ..+..++....+-+......+.+|+--..+|
T Consensus        68 ~ea~~kLee~ek~~~~aE~ev~~L~Rriqll   98 (101)
T 3u1c_A           68 HKSEDSLLFAEENAAKAESEVASLNRRIQLV   98 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777776666777776555554

>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A

Probab=95.40  E-value=0.53  Score=46.85  Aligned_cols=75  Identities=15%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~KaK~  164 (312)
T 3abh_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666666666666666665332 222                   23444556666666666666777777


Q ss_pred             HHHHHHHhhhHHHHH
Q 004063          498 EYANVRLECNAADER  512 (776)
Q Consensus       498 ErDaAq~E~n~A~ER  512 (776)
                      .|+.+-.+...|..+
T Consensus       165 ~Y~~~c~e~e~a~~~  179 (312)
T 3abh_A          165 AHHAACKEEKLAISR  179 (312)
T ss_dssp             HHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777766666665544

>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A

Probab=95.03  E-value=3.3  Score=41.60  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004063          439 LQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-------------------NQLKSEMEKLQEEIKVQLVELESFRNE  498 (776)
Q Consensus       439 LqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~aE  498 (776)
                      |..+...-..-++.+|..+..+.+.+..+ ...+                   ..+...+++++.++..+...++..+..
T Consensus        77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~  156 (337)
T 2x3v_A           77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKA  156 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666677777777777666432 1222                   334445677888888888888989988


Q ss_pred             HHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHH
Q 004063          499 YANVRLECNAADERAKIL-------ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA  571 (776)
Q Consensus       499 rDaAq~E~n~A~ERaK~L-------AaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIda  571 (776)
                      |+.+-.+...|..+....       ..++.-++.++.+++..--++..+-.........++..|..      .+...++.
T Consensus       157 Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~------~~~~~~~~  230 (337)
T 2x3v_A          157 YHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYME------GMEQVFEQ  230 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHH
Confidence            988888877765543322       24455555554444444444443333333333333333321      24455566


Q ss_pred             HH--HHH--HHHHHHHHh
Q 004063          572 LQ--EEK--KMMQSKLRK  585 (776)
Q Consensus       572 LQ--EEK--klLqSKLR~  585 (776)
                      ||  ||.  ..+...|..
T Consensus       231 ~Q~le~~Rl~~lk~~l~~  248 (337)
T 2x3v_A          231 CQQFEEKRLVFLKEVLLD  248 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            65  222  344444554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.91  E-value=0.71  Score=40.68  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  549 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~  549 (776)
                      .|..+|..|..|+.+       .+......+.+...+-.|..++..+-.||..|..++..+       +.+++.+.....
T Consensus         3 ~md~iKkKm~~lk~e-------~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l-------E~eld~~~e~l~   68 (101)
T 3u59_A            3 SMEAIKKKMQMLKLD-------KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT-------EDEVEKYSESVK   68 (101)
T ss_dssp             THHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            467788888555554       233333344444444455555555555555555555433       555666666666


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063          550 SYKKKISSLEKERQDFQSTIEALQEEKKM  578 (776)
Q Consensus       550 S~~~q~ssi~kER~~l~stIdaLQEEKkl  578 (776)
                      .+..++....+.+......+.+|+--..+
T Consensus        69 ~a~~kLe~~ek~~~~AE~evasLnRriql   97 (101)
T 3u59_A           69 EAQEKLEQAEKKATDAEAEVASLNRRIQL   97 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666655555555544443

>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}

Probab=94.74  E-value=1  Score=45.78  Aligned_cols=130  Identities=15%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      .|..+...-..-++.+|..+..+.+..+.+- ..+                   ..+...+++++.++..+...++..+.
T Consensus        85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaKk  164 (350)
T 3aco_A           85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK  164 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHHHHHHHHHHHTSHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555666667777777766665432 111                   34555666677777777778888888


Q ss_pred             HHHHHHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHH
Q 004063          498 EYANVRLECNAADERAKI-------LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE  570 (776)
Q Consensus       498 ErDaAq~E~n~A~ERaK~-------LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stId  570 (776)
                      .|+.+-.+...|..+...       .+.|+.-++.++.+++..--++.++-.....+...++..|.      ..+...++
T Consensus       165 ~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~------~~~~~~~~  238 (350)
T 3aco_A          165 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYM------ENMEQVFE  238 (350)
T ss_dssp             THHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence            888877777766654311       14666777777776666666665555444444444444443      23566667


Q ss_pred             HHH
Q 004063          571 ALQ  573 (776)
Q Consensus       571 aLQ  573 (776)
                      .||
T Consensus       239 ~~Q  241 (350)
T 3aco_A          239 QCQ  241 (350)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            666

>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}

Probab=94.56  E-value=5.5  Score=41.94  Aligned_cols=48  Identities=4%  Similarity=0.073  Sum_probs=37.7

Q ss_pred             ccccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 004063          654 LAVNIPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKLKDLNN  702 (776)
Q Consensus       654 ~~~~Ip~DQlR~IdsInaLisELa~EReravsaLa~esr~~~dLk~lN~  702 (776)
                      .|..+..|.++ .+.|...++.+..+=.++...+....+.+..|+....
T Consensus       293 ~~~~~~~~e~~-~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~  340 (406)
T 4dyl_A          293 EPGELQLNELT-VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELR  340 (406)
T ss_dssp             -TTCCCCSTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666655 7899999999999999999998888888888776654

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=94.53  E-value=0.46  Score=45.84  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             HHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          453 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       453 La~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      +...|....+.-+.....+.+|+.++.+|+.+++...-.++.+..|+.+.+++++.+.++.+.|..|=..|=+|.++-+.
T Consensus        59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~  138 (152)
T 3a7p_A           59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE  138 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445566677778888889999999999999999999999999999999999999999999999999999999886544


Q ss_pred             H
Q 004063          533 N  533 (776)
Q Consensus       533 ~  533 (776)
                      .
T Consensus       139 q  139 (152)
T 3a7p_A          139 K  139 (152)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=94.24  E-value=0.33  Score=45.50  Aligned_cols=83  Identities=18%  Similarity=0.181  Sum_probs=58.1

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE  574 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQE  574 (776)
                      +-.++-+....+|-|+|-.+ +..+...|+.++..       ..+++..|++|+-++.-++..+.++-..++..++.||+
T Consensus        53 l~~~r~aVLaALNiadEl~k-~~~~~~~L~~~l~~-------~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~  124 (138)
T 3hnw_A           53 MSAELRTDMMYLNIADDYFK-AKKMADSLSLDIEN-------KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK  124 (138)
T ss_dssp             SCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555566655443 33444555544443       37777788888888888888888888888999999999


Q ss_pred             HHHHHHHHHHh
Q 004063          575 EKKMMQSKLRK  585 (776)
Q Consensus       575 EKklLqSKLR~  585 (776)
                      ++.-|++.|..
T Consensus       125 ~~~~le~~~~~  135 (138)
T 3hnw_A          125 NIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.15  E-value=0.37  Score=42.33  Aligned_cols=66  Identities=17%  Similarity=0.258  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 004063          522 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS  587 (776)
Q Consensus       522 ~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~as  587 (776)
                      .||.||.++=-.=--++-+++.|+.+-..+..+...+...|..+...++.|++|...-+.|||.+.
T Consensus        10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466666655333333455666677777777778888888888999999999999999999999654

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=94.07  E-value=4.8  Score=39.31  Aligned_cols=78  Identities=13%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE  505 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v-----------~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E  505 (776)
                      .+.++...-..-++.+|..+..+.+.++.+ ...+           ...+..+++++.++..+...++..+..|+.+-.+
T Consensus        66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e  145 (301)
T 2efk_A           66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE  145 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555566666666666666322 3333           3444555666666666666677777777776666


Q ss_pred             hhHHHHHHHH
Q 004063          506 CNAADERAKI  515 (776)
Q Consensus       506 ~n~A~ERaK~  515 (776)
                      ...|......
T Consensus       146 ~e~a~~~~~~  155 (301)
T 2efk_A          146 AEKAAQTAER  155 (301)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6666555443

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=93.44  E-value=0.61  Score=41.10  Aligned_cols=71  Identities=14%  Similarity=0.252  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004063          511 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL  583 (776)
Q Consensus       511 ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKL  583 (776)
                      ++.+.|.++--.||.++..++...-  .+.-.-+..++..+++++..+..|+..+...|+.|+++...+..||
T Consensus        23 dKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL   93 (93)
T 3s4r_A           23 DKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL   93 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            3444444444455555555543321  2222347788999999999999999999999999999999988875

>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}

Probab=93.16  E-value=4  Score=39.39  Aligned_cols=36  Identities=19%  Similarity=0.147  Sum_probs=22.1

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE  483 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~  483 (776)
                      ..++.+|..+..+.+..|+-...+..+..++++.+.
T Consensus        80 ~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK  115 (276)
T 2v0o_A           80 TSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHK  115 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777776555555555555554433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.93  E-value=2.7  Score=44.16  Aligned_cols=55  Identities=18%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 004063          410 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN  465 (776)
Q Consensus       410 ~~~F~s~~~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yN  465 (776)
                      ...|+++... ++..+++....+.++|..|...+.+.++.-+....+......++.
T Consensus       344 L~gyC~s~~~-~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~e  398 (487)
T 3oja_A          344 LKEQYRTVID-QVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE  398 (487)
T ss_dssp             HHHHTCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhchhh
Confidence            4456665544 788888888889999999988888888777777776666655555

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=92.79  E-value=2.9  Score=37.00  Aligned_cols=75  Identities=20%  Similarity=0.273  Sum_probs=35.9

Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          494 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       494 ~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      .++.|-..+..++.+...--..|..|+..|+.++.+|.-.+-+       +-.+.+.+..++-..+.||++|..-++-.|
T Consensus        15 ~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~-------~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~   87 (96)
T 3q8t_A           15 ELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQ-------YQREYSEFKRQQLELDDELKSVENQMRYAQ   87 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444444444566666666666655444433       333444555555555555555444444444


Q ss_pred             HH
Q 004063          574 EE  575 (776)
Q Consensus       574 EE  575 (776)
                      -.
T Consensus        88 ~q   89 (96)
T 3q8t_A           88 MQ   89 (96)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.74  E-value=8.4  Score=38.15  Aligned_cols=36  Identities=14%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      +.+.++.+.+..=-.++.+-++..=|...+|++=|.
T Consensus       119 DdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          119 DDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444455566666666666666666665

>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4

Probab=92.60  E-value=8.1  Score=37.59  Aligned_cols=46  Identities=17%  Similarity=0.099  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI  515 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~  515 (776)
                      ....++..+++++.++..+...++..+..|+.+-.++..|......
T Consensus       117 ~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~  162 (305)
T 2efl_A          117 ERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEK  162 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555566666777777777777777777777777766665443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.30  E-value=2.6  Score=38.08  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHH
Q 004063          470 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS  549 (776)
Q Consensus       470 ~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~  549 (776)
                      ..+.|+.++.+|+.++..--.++..+..++...+..+..|..+.+.+..||..|-.-+..                    
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe--------------------   65 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD--------------------   65 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            345556666666665555555555566666666666666666666666666666554441                    


Q ss_pred             HHHHHHHhHHHhhhhHHHHHHHHHHHHHH
Q 004063          550 SYKKKISSLEKERQDFQSTIEALQEEKKM  578 (776)
Q Consensus       550 S~~~q~ssi~kER~~l~stIdaLQEEKkl  578 (776)
                      .+.+-|....++|..+..-++.|+++++-
T Consensus        66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~d   94 (97)
T 2eqb_B           66 EANNMVADARKEKYAIEILNKRLTEQLRE   94 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            22333444456666677777777776653

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.00  E-value=1  Score=42.19  Aligned_cols=9  Identities=11%  Similarity=0.220  Sum_probs=5.0

Q ss_pred             CCccccccC
Q 004063          393 DRGDIRRLG  401 (776)
Q Consensus       393 n~v~~~~~~  401 (776)
                      |+|.|.+.|
T Consensus         8 ~~V~V~I~G   16 (138)
T 3hnw_A            8 NTAEVILGG   16 (138)
T ss_dssp             -CEEEEETT
T ss_pred             CeeEEEECC
Confidence            556666666

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=91.65  E-value=1.3  Score=37.68  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          545 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       545 ~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      -.|+.++.++++       .+...+|+.++....++.+|..
T Consensus        40 E~ev~~L~kKiq-------~lE~eld~~ee~l~~a~~kLee   73 (81)
T 1ic2_A           40 EDELVALQKKLK-------GTEDELDKYSESLKDAQEKLEL   73 (81)
T ss_dssp             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666       3445666667777777777764

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=91.23  E-value=0.15  Score=56.58  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=4.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004063          509 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK  585 (776)
Q Consensus       509 A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR~  585 (776)
                      |.+-+..|+.+...+|+...+|+....+..++-+.|..++..+..++..+..++..=-.+-..||+|...++..+++
T Consensus       375 ~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~  451 (575)
T 2i1j_A          375 LQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDE  451 (575)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444555555555555555554455445555555555555555444444444444555555555544443

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=91.05  E-value=4.1  Score=36.08  Aligned_cols=91  Identities=21%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHH
Q 004063          469 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI  548 (776)
Q Consensus       469 ~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er  548 (776)
                      ..+.+|+.++..|+.+=..-+..|..+..|++..-.++.+....++.|-.+=...-.       ..=...+++-.+..|+
T Consensus         4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~-------eyn~~~~ql~e~~dE~   76 (96)
T 3q8t_A            4 SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQR-------EYSEFKRQQLELDDEL   76 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            345667777777777666666666666666666555555444444444333332222       2333345555677777


Q ss_pred             HHHHHHHHhHHHhhhhHHHHHHHHH
Q 004063          549 SSYKKKISSLEKERQDFQSTIEALQ  573 (776)
Q Consensus       549 ~S~~~q~ssi~kER~~l~stIdaLQ  573 (776)
                      +|+..+|.       ..+.-+++|+
T Consensus        77 ~Sl~~q~~-------~~~~qLdkL~   94 (96)
T 3q8t_A           77 KSVENQMR-------YAQMQLDKLK   94 (96)
T ss_dssp             HHHHHHHH-------HHHHHHHHHH
T ss_pred             HHHHHHHH-------HHHHHHHHhh
Confidence            77777776       3344555554

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.05  E-value=12  Score=36.20  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=37.5

Q ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHH
Q 004063          493 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL  572 (776)
Q Consensus       493 e~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaL  572 (776)
                      ..+..++...+..+.+|-.+.+.+..||..|-.-++.-=      -+=+...+-++..++.+..-+.+.=.+....|+.|
T Consensus        61 ~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEA------N~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~l  134 (154)
T 2ocy_A           61 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEA------NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTL  134 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444445555555556666665554443210      01111122222333333333333333444566666


Q ss_pred             HHHHHHHHHHHH
Q 004063          573 QEEKKMMQSKLR  584 (776)
Q Consensus       573 QEEKklLqSKLR  584 (776)
                      |+++..|..-+-
T Consensus       135 q~ql~~LK~v~~  146 (154)
T 2ocy_A          135 TLQLKNLKKVMH  146 (154)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHH
Confidence            666666654433

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=90.46  E-value=13  Score=35.77  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          512 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       512 RaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      +.|.|....-..|.|+-..=...-|+++++..+-+++...+.+|..+
T Consensus        78 qIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i  124 (155)
T 2efr_A           78 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAI  124 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333344444444444444444444433

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=90.31  E-value=0.77  Score=42.42  Aligned_cols=61  Identities=25%  Similarity=0.224  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063          477 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  547 (776)
Q Consensus       477 ~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E  547 (776)
                      .+++|++||......++.|+.|...+..          .|-..|..||.++..-|...-++.-|.+.|+.|
T Consensus        16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~----------ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e   76 (120)
T 3i00_A           16 LIERLYREISGLKAQLENMKTESQRVVL----------QLKGHVSELEADLAEQQHLRQQAADDCEFLRAE   76 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666655555556667666544322          233445555555554443333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=90.02  E-value=4.5  Score=37.33  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHH
Q 004063          497 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK  576 (776)
Q Consensus       497 aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEK  576 (776)
                      .|++.....++.|.+-...-+.++..|.+++.+++-..    -+++=|+..++-|+.-..+=-.+|..++.+++.|++++
T Consensus        24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql   99 (110)
T 2v4h_A           24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL   99 (110)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence            35666666667777777777777777777776632111    12334666666666666666677888999999999999


Q ss_pred             HHHHHHHHh
Q 004063          577 KMMQSKLRK  585 (776)
Q Consensus       577 klLqSKLR~  585 (776)
                      ..||..+.+
T Consensus       100 ~~Lq~q~~~  108 (110)
T 2v4h_A          100 EQLQREFNK  108 (110)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999887654

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=89.96  E-value=1.3  Score=38.97  Aligned_cols=57  Identities=26%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHH---HhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          476 SEMEKLQEEIKVQLV---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       476 ~~mE~Lq~Ei~aQ~~---~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      ..-..|+.||++..+   +|..+++.--+++-++.+|..|++.|..||..|++++..||+
T Consensus        14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~   73 (81)
T 1wt6_A           14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334456778887765   456668888888999999999999999999999999988764

>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A

Probab=89.82  E-value=2.2  Score=43.42  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh-HHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQR-SVV-------------------NQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~-~~v-------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      .|..++..-..-++.+|..+..+.+++..+- ..+                   ..+...+++++..+..+...|+..+.
T Consensus        76 sl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk  155 (320)
T 3m3w_A           76 TLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKK  155 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455555556666666666666554421 111                   22223444555555555555665665


Q ss_pred             HHHHHHHh
Q 004063          498 EYANVRLE  505 (776)
Q Consensus       498 ErDaAq~E  505 (776)
                      .|+.+-.+
T Consensus       156 ~Y~~~c~e  163 (320)
T 3m3w_A          156 SYHTARKD  163 (320)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55554444

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=89.43  E-value=4.8  Score=37.12  Aligned_cols=102  Identities=13%  Similarity=0.189  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHH
Q 004063          468 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE  547 (776)
Q Consensus       468 ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~E  547 (776)
                      ...++.|+....+|+.++...       ++|++-..-..+   +....-..+|-.|.+++..-=+.-..+++....+   
T Consensus         5 ~~~~~~lq~~~~ql~~qL~k~-------~~~r~~Le~~w~---~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~---   71 (112)
T 1x79_B            5 RDQVKKLQLMLRQANDQLEKT-------MKDKQELEDFIK---QSSEDSSHQISALVLRAQASEILLEELQQGLSQA---   71 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            456677777776666653332       222222222223   2333456788888887775433333333333333   


Q ss_pred             HHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004063          548 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK  582 (776)
Q Consensus       548 r~S~~~q~ssi~kER~~l~stIdaLQEEKklLqSK  582 (776)
                      .+.+..++.-|+.+|..|...|.+||.|-.-|.-|
T Consensus        72 q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk  106 (112)
T 1x79_B           72 KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK  106 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            36677888889999999999999999887665533

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=89.31  E-value=13  Score=39.14  Aligned_cols=12  Identities=42%  Similarity=0.493  Sum_probs=5.0

Q ss_pred             eEeecCCCCCCC
Q 004063           22 VRVTDLDGAGTS   33 (776)
Q Consensus        22 vr~~d~dgag~s   33 (776)
                      ++..|..|-++.
T Consensus        36 L~~L~Ls~n~l~   47 (487)
T 3oja_A           36 VKELDLSGNPLS   47 (487)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccEEEeeCCcCC
Confidence            344444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=89.09  E-value=6.1  Score=34.73  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=16.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 004063          447 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE  484 (776)
Q Consensus       447 ~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~E  484 (776)
                      .+-++++-.+.-.+-++..+-...|..|+..+..|+.+
T Consensus        22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e   59 (101)
T 3u59_A           22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE   59 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444

>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}

Probab=88.04  E-value=9.3  Score=37.56  Aligned_cols=134  Identities=14%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-hHHH------------------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004063          437 FALQRSLEASRALSESLAAENSSLTDSYNQQ-RSVV------------------NQLKSEMEKLQEEIKVQLVELESFRN  497 (776)
Q Consensus       437 faLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ-~~~v------------------~qLk~~mE~Lq~Ei~aQ~~~le~l~a  497 (776)
                      ..|..+...-..-++.+|..+..+.+.+..+ ...+                  ..+...+++++..+..+...++..+.
T Consensus        63 gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk  142 (290)
T 3i2w_A           63 GTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKA  142 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556555666667777777776666332 1222                  34445667777777888888888888


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhh----HHHHHHHHH
Q 004063          498 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ  573 (776)
Q Consensus       498 ErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~----l~stIdaLQ  573 (776)
                      .|+.+-.+...|..+..........-..++.+++...-|+...++..+   ..|...+..+.+.|.+    +-..++.||
T Consensus       143 ~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~---~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q  219 (290)
T 3i2w_A          143 DYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCR---EKYEQAIAEITKYNSVYIEDMTSVFEKCQ  219 (290)
T ss_dssp             HHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            888877776666544332111111112333334333333333333333   4444445555444444    334556666

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=86.74  E-value=5.1  Score=34.83  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=13.5

Q ss_pred             HhhhhHHHHHHHHHHHHHHH
Q 004063          560 KERQDFQSTIEALQEEKKMM  579 (776)
Q Consensus       560 kER~~l~stIdaLQEEKklL  579 (776)
                      --|-+|..-|+.|++|..-|
T Consensus        63 l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           63 LARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34556777777888877554

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=86.44  E-value=19  Score=32.80  Aligned_cols=28  Identities=29%  Similarity=0.349  Sum_probs=22.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          505 ECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       505 E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      -|.+|.+|...|.+.-+.||.++..+..
T Consensus        63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~   90 (129)
T 2fxo_A           63 NLADAEERCDQLIKNKIQLEAKVKEMNK   90 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3678888888888888888888887743

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=85.20  E-value=21  Score=32.21  Aligned_cols=97  Identities=16%  Similarity=0.194  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--hhH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004063          428 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ--QRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR  503 (776)
Q Consensus       428 hIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNq--Q~~--~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq  503 (776)
                      ||+=| ++.-...+-|..++...+.+..+-..|.+++.+  +..  ...+-...|+.|++||.....+|..|+..++...
T Consensus         3 Hi~LL-RK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~   81 (107)
T 2no2_A            3 HADLL-RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSA   81 (107)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433 234445556666666666666666666666655  111  1222334455566666666666666777777766


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHH
Q 004063          504 LECNAADERAKILASEVIGLEE  525 (776)
Q Consensus       504 ~E~n~A~ERaK~LAaEVV~LEe  525 (776)
                      ++--.-..+...|.+|...|+.
T Consensus        82 ~~~~~l~~~~~~l~~Ek~~L~~  103 (107)
T 2no2_A           82 QSEANWAAEFAELEKERDSLVS  103 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666554

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=85.19  E-value=20  Score=31.78  Aligned_cols=62  Identities=13%  Similarity=0.102  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHH
Q 004063          448 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA  509 (776)
Q Consensus       448 ~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A  509 (776)
                      +=++.|-.|.+...+++.+--..+.++....+++++||.+-.-.+..+..|+|.++..+..|
T Consensus         9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea   70 (101)
T 3u1c_A            9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS   70 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555555554444444445555444444333

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=85.07  E-value=45  Score=35.82  Aligned_cols=13  Identities=15%  Similarity=0.294  Sum_probs=9.5

Q ss_pred             hhHHHHHHHHHHH
Q 004063          420 EDFAALEQHIEDL  432 (776)
Q Consensus       420 ~~faaLqqhIeDL  432 (776)
                      ..|..|-+|+++-
T Consensus        22 ~G~~~L~~r~~~g   34 (486)
T 3haj_A           22 GNYKRTVKRIDDG   34 (486)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH
Confidence            6788888777653

>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}

Probab=84.91  E-value=43  Score=35.45  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 004063          671 ALISELALEKEELVQALSSELAQSSKLKDLNNELSR  706 (776)
Q Consensus       671 aLisELa~EReravsaLa~esr~~~dLk~lN~ELsR  706 (776)
                      ..|..|+.||+++....+...-.+.++.++...+++
T Consensus       224 ~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~  259 (302)
T 3ibp_A          224 SRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSR  259 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            478889999999997777776688888888888887

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=84.62  E-value=13  Score=31.59  Aligned_cols=77  Identities=22%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHH
Q 004063          472 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY  551 (776)
Q Consensus       472 ~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~  551 (776)
                      ..+|..|-.|+.+       .+......+.+...+..+..++..+-.||..|..++..+       +-+++.+...+..+
T Consensus         2 ~~ikkKm~~lk~e-------~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l-------E~eld~~ee~l~~a   67 (81)
T 1ic2_A            2 DAIKKKMQMLKLD-------KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT-------EDELDKYSESLKDA   67 (81)
T ss_dssp             CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence            4577777666654       344445555555566666666666667777776666654       66666777666666


Q ss_pred             HHHHHhHHHhh
Q 004063          552 KKKISSLEKER  562 (776)
Q Consensus       552 ~~q~ssi~kER  562 (776)
                      ..++....+-+
T Consensus        68 ~~kLeeaek~~   78 (81)
T 1ic2_A           68 QEKLELADKKA   78 (81)
T ss_dssp             HHHHHHHGGGC
T ss_pred             HHHHHHHHHHh
Confidence            66666554443

>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A

Probab=84.36  E-value=3.2  Score=46.14  Aligned_cols=99  Identities=16%  Similarity=0.178  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHH
Q 004063          473 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK  552 (776)
Q Consensus       473 qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~  552 (776)
                      +++.++|+-+.|+..   .|..+.+|...|+.++..+.+.+..|+.+.-.+|++...|-...-.++.+.++|..+.....
T Consensus       328 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~  404 (575)
T 2i1j_A          328 AARERAEKKQQEYQD---RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEA  404 (575)
T ss_dssp             CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred             HHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            445555555555443   34566678888888888888888888888888888887776666666666555555444444


Q ss_pred             HHHHhHHHhhhhHHHHHHHHHH
Q 004063          553 KKISSLEKERQDFQSTIEALQE  574 (776)
Q Consensus       553 ~q~ssi~kER~~l~stIdaLQE  574 (776)
                      .+-..++.+.......+.+|.+
T Consensus       405 ~e~~~l~~~~~~~~~~~~~~~~  426 (575)
T 2i1j_A          405 AERQKLEDEIRAKQEEVSRIQQ  426 (575)
T ss_dssp             ----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444443

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A

Probab=84.23  E-value=16  Score=40.90  Aligned_cols=98  Identities=17%  Similarity=0.344  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHH
Q 004063          474 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKK  553 (776)
Q Consensus       474 Lk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~  553 (776)
                      -+.++..+|.|++.=..+.+..+++|+.+..+..+..++   +.+|-+.+..+.-..+.   +-+.+|+++..++..|++
T Consensus         7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~---i~aeNeaikkrNa~aka---~Ye~~l~kY~~dlakY~~   80 (497)
T 3iox_A            7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAA---LTAENTAIKKRNADAKA---DYEAKLAKYQADLAKYQK   80 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            344555555555555556666666666666555543333   44455444444433311   223344455555544444


Q ss_pred             HHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          554 KISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       554 q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ++-       +-+..+.+-|+|++.-+..|-
T Consensus        81 ~~A-------eY~~kl~aYe~~~~~~~k~la  104 (497)
T 3iox_A           81 DLA-------DYPVKLKAYEDEQTSIKAALA  104 (497)
T ss_dssp             HHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            422       333445555555554444444

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=83.75  E-value=19  Score=32.68  Aligned_cols=63  Identities=16%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      -...+.+|++.+..|+-||..+..-.+++..-..-+...+..+   .+.++.-+..||+++.++|.
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~---l~~~q~~i~~lE~eL~~~r~   96 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA---LKDARNKLAELEEALQKAKQ   96 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH
Confidence            3455667777777777776666555555543333333333222   22333444455555554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=83.59  E-value=35  Score=33.40  Aligned_cols=41  Identities=22%  Similarity=0.415  Sum_probs=27.9

Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHH
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ  580 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLq  580 (776)
                      .+..|..|+++.+..++.+..|+..++.-|..|.-|+..+.
T Consensus        98 ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           98 RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34446677777777777777777777777777776666665

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=83.47  E-value=33  Score=33.07  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=74.0

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004063          457 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN  533 (776)
Q Consensus       457 NsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~---l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~  533 (776)
                      |..|..-||.|..    |.+.+-+++.++..+...+..   ++.+++.       +..+.+..-.|+..|.+++.+.|..
T Consensus         5 StKLI~Ain~qs~----LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-------l~~~~~~~~~e~~~L~~~l~~E~~~   73 (154)
T 2ocy_A            5 STQLIESVDKQSH----LEEQLNKSLKTIASQKAAIENYNQLKEDYNT-------LKRELSDRDDEVKRLREDIAKENEL   73 (154)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            4456666776653    455555555555544444333   3444433       3344556777777777777777777


Q ss_pred             hhhhHHHhhhhHHHHHHH--------HHHHHhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004063          534 ELKLERQLENSQSEISSY--------KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR  584 (776)
Q Consensus       534 eLKleKElE~l~~Er~S~--------~~q~ssi~kER~~l~stIdaLQEEKklLqSKLR  584 (776)
                      ...++++..++..|++-+        .+-|....++|..+..-++.|++..+....+|.
T Consensus        74 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A           74 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777666666666543        444566778888899888999887766666555

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=82.85  E-value=1.7  Score=39.48  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=54.9

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 004063          462 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--FRNEYANVR-----LECNAADERAKILASEVIGLEEKALRLRSNE  534 (776)
Q Consensus       462 ~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~--l~aErDaAq-----~E~n~A~ERaK~LAaEVV~LEek~lqLRS~e  534 (776)
                      +.||.-+..|..|..+.++|+++++...+.|+.  ++.+|+...     .--|=|.+--+....+|..|+.+|-+||.--
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v   91 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999888888877  567776632     2233344444445688888888888887544


Q ss_pred             hh
Q 004063          535 LK  536 (776)
Q Consensus       535 LK  536 (776)
                      -+
T Consensus        92 ~~   93 (100)
T 1go4_E           92 RA   93 (100)
T ss_dssp             TT
T ss_pred             HH
Confidence            43

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.80  E-value=23  Score=32.16  Aligned_cols=100  Identities=15%  Similarity=0.259  Sum_probs=47.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 004063          460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  539 (776)
Q Consensus       460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK  539 (776)
                      |.......+..+..-|.++-.|++.|+.-..++++++.-.++....+.++..|   ...++..+..++..       ++.
T Consensus        20 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~-------lE~   89 (129)
T 3tnu_B           20 LQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAE-------LEE   89 (129)
T ss_dssp             --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHH
Confidence            33344455566666677777777776666666666665554433333333332   23444444444443       356


Q ss_pred             HhhhhHHHHHHHHHHHHhHHHhhhhHHHHH
Q 004063          540 QLENSQSEISSYKKKISSLEKERQDFQSTI  569 (776)
Q Consensus       540 ElE~l~~Er~S~~~q~ssi~kER~~l~stI  569 (776)
                      ++..++.++.+.-++|+.++--.-.|--+|
T Consensus        90 eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EI  119 (129)
T 3tnu_B           90 ALQKAKQDMARLLREYQELMNTKLALDVEI  119 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666665554444443333

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.75  E-value=18  Score=32.92  Aligned_cols=63  Identities=21%  Similarity=0.263  Sum_probs=27.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004063          467 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS  532 (776)
Q Consensus       467 Q~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS  532 (776)
                      -...+.+|++.+..|+-||+.+..-.+++..-..-+...+..+.   +.++..+..||.++.++|.
T Consensus        36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l---~~~q~~i~~lE~eL~~~r~   98 (131)
T 3tnu_A           36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQL---AQIQEMIGSVEEQLAQLRC   98 (131)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence            34456666667767776666655554444333333333222222   2333344445555544443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=81.72  E-value=9.1  Score=34.13  Aligned_cols=50  Identities=24%  Similarity=0.243  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhH
Q 004063          508 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL  558 (776)
Q Consensus       508 ~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi  558 (776)
                      |+.=|.|.+ .+...||.+...|..+--++.+|+..+..|++.|+.+|+.+
T Consensus        39 Aq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           39 AQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456688888 57789999999888888888888888888888888888754

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=80.10  E-value=23  Score=32.79  Aligned_cols=16  Identities=13%  Similarity=0.125  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHHH
Q 004063          511 ERAKILASEVIGLEEK  526 (776)
Q Consensus       511 ERaK~LAaEVV~LEek  526 (776)
                      |+...|.++|.--.+-
T Consensus        62 E~I~vLkaQv~IY~~D   77 (110)
T 2v4h_A           62 ETVPVLKAQADIYKAD   77 (110)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444333333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=80.06  E-value=10  Score=33.18  Aligned_cols=51  Identities=10%  Similarity=0.163  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhH
Q 004063          495 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ  545 (776)
Q Consensus       495 l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleKElE~l~  545 (776)
                      +.+|++.+.+...++-.|++.|...|-.||.++..-|..+-.++.++..+.
T Consensus         4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~   54 (79)
T 3cvf_A            4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA   54 (79)
T ss_dssp             ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666777777777766666666666666666665555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	776
d1f5na1	300	a.114.1.1 (A:284-583) Interferon-induced guanylate	0.002

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 300

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 21/172 (12%), Positives = 50/172 (29%), Gaps = 9/172 (5%)

Query: 422 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 481
                +  ++ + ++ +          L E + A   S    Y      +  LK +  + 
Sbjct: 109 RDDFCKQNQEASSDRCS-GLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEE 167

Query: 482 QEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 541
             +       L+++     ++       D+       E+     KA   +++   L    
Sbjct: 168 PRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQ 227

Query: 542 ENSQSEISSY--------KKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 585
             ++  +           K+    +E +R       E     K   Q +L K
Sbjct: 228 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 279

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	776
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	95.72
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.81
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	94.66
d1f5na1	300	Interferon-induced guanylate-binding protein 1 (GB	87.78
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	86.42
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	85.83
d2efka1	279	CDC42-interacting protein 4, CIP4 {Human (Homo sap	84.43
d1i4da_	200	Arfaptin, Rac-binding fragment {Human (Homo sapien	81.51

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.58  Score=42.02  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=57.8

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhHH
Q 004063          460 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER  539 (776)
Q Consensus       460 Lt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eLKleK  539 (776)
                      |..-..++......++.++.+++.++......++..+..|+.+..+...|..+...+......-..++.+++...-+...
T Consensus        93 l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~  172 (279)
T d2efka1          93 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSH  172 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            33344455666777788888888998888889999999999998888888877666654433334444444444444444


Q ss_pred             HhhhhH
Q 004063          540 QLENSQ  545 (776)
Q Consensus       540 ElE~l~  545 (776)
                      ++++++
T Consensus       173 ~~~~~~  178 (279)
T d2efka1         173 MAEESK  178 (279)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=1.3  Score=39.68  Aligned_cols=39  Identities=21%  Similarity=0.175  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Q 004063          475 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA  513 (776)
Q Consensus       475 k~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERa  513 (776)
                      ..++.+++.++......++..+..|..+..++..|....
T Consensus       117 ~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~  155 (288)
T d2efla1         117 FHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF  155 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444444444444444333

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=1.4  Score=39.43  Aligned_cols=91  Identities=9%  Similarity=0.109  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Q 004063          438 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA  517 (776)
Q Consensus       438 aLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~~v~qLk~~mE~Lq~Ei~aQ~~~le~l~aErDaAq~E~n~A~ERaK~LA  517 (776)
                      .+.++...-..-++.+|..+..+....+.+  ++..|+.-++.+++.++........+..++.....++.++..+-....
T Consensus        68 ~~~~~~~~~~~~~~~~a~~h~~~a~~l~~~--i~~~l~~~~~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~  145 (288)
T d2efla1          68 TSCKAFISNLNEMNDYAGQHEVISENMASQ--IIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDC  145 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666777888888888887653  445555555555555555555666777788888888888888888788


Q ss_pred             HHHHHHHHHHHHH
Q 004063          518 SEVIGLEEKALRL  530 (776)
Q Consensus       518 aEVV~LEek~lqL  530 (776)
                      .|+..+..++.++
T Consensus       146 ~e~e~~~~~~~~~  158 (288)
T d2efla1         146 KEADRAQQYFEKM  158 (288)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            8887777766654

>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
superfamily: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
family: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
domain: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=8.2  Score=34.67  Aligned_cols=20  Identities=10%  Similarity=0.182  Sum_probs=11.7

Q ss_pred             HHHHHhhhHHHHHHHHhhHH
Q 004063          451 ESLAAENSSLTDSYNQQRSV  470 (776)
Q Consensus       451 EsLa~ENsaLt~~yNqQ~~~  470 (776)
                      ..+..+...+...|++....
T Consensus       151 ~~~~~~~~~~~~~~~~~~~k  170 (300)
T d1f5na1         151 RLFVQKLQDLKKKYYEEPRK  170 (300)
T ss_dssp             HHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            34555556677777766543

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.42  E-value=6.5  Score=31.12  Aligned_cols=68  Identities=10%  Similarity=0.076  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004063          514 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS  581 (776)
Q Consensus       514 K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~ssi~kER~~l~stIdaLQEEKklLqS  581 (776)
                      ..+......+..++..+....-.+...+..+..++..+..++..+......+...++.+.+..+.+..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  179 (185)
T d2ap3a1         112 KEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQK  179 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444433334444444455555556666666666666666666665555554443

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.83  E-value=6.9  Score=30.93  Aligned_cols=34  Identities=9%  Similarity=0.202  Sum_probs=15.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004063          420 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL  453 (776)
Q Consensus       420 ~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsL  453 (776)
                      .+...|+..++.+-...-.+.....+-..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~e~~~   38 (185)
T d2ap3a1           5 KEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKK   38 (185)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666555554444444444433333333

>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: CDC42-interacting protein 4, CIP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.43  E-value=13  Score=32.84  Aligned_cols=43  Identities=12%  Similarity=-0.016  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhHhhhhHHHhhhhHHHHHHHHHHHH
Q 004063          514 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS  556 (776)
Q Consensus       514 K~LAaEVV~LEek~lqLRS~eLKleKElE~l~~Er~S~~~q~s  556 (776)
                      |.+..++-.++.++....+.-.|+.+.......+.+++..++.
T Consensus       105 k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~  147 (279)
T d2efka1         105 KMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE  147 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444433333333333333333

>d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: Arfaptin, Rac-binding fragment
domain: Arfaptin, Rac-binding fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=14  Score=31.11  Aligned_cols=157  Identities=13%  Similarity=0.050  Sum_probs=68.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhH-------HHHHHH---HHHHHHHHHHHH
Q 004063          418 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS-------VVNQLK---SEMEKLQEEIKV  487 (776)
Q Consensus       418 ~~~~faaLqqhIeDLT~EKfaLqR~L~~s~~l~EsLa~ENsaLt~~yNqQ~~-------~v~qLk---~~mE~Lq~Ei~a  487 (776)
                      .|.+|....+.+.++-+.=-.|++...+-..-...|......+...++..+.       .+..+.   +.|+.....+..
T Consensus         4 ~D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   83 (200)
T d1i4da_           4 VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLG   83 (200)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666655444445555555445555555555555555444432       222222   233332222211


Q ss_pred             H-HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhHHHhhhhHHHHHHHHHHHHhHHHhhhh
Q 004063          488 Q-LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL--KLERQLENSQSEISSYKKKISSLEKERQD  564 (776)
Q Consensus       488 Q-~~~le~l~aErDaAq~E~n~A~ERaK~LAaEVV~LEek~lqLRS~eL--KleKElE~l~~Er~S~~~q~ssi~kER~~  564 (776)
                      . ...+..+...+..+..+..++..+-...-.+....-.++.+++...-  +....++.+..+.+.++.++..+   +.+
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~~~~~~kl~~ae~~~~~a~~~fe~~---~~~  160 (200)
T d1i4da_          84 AVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKL---RGD  160 (200)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH---HHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHH---HHH
Confidence            1 11112222233333333333333332223333333333332221111  11123555666666666666654   667


Q ss_pred             HHHHHHHHHHHHH
Q 004063          565 FQSTIEALQEEKK  577 (776)
Q Consensus       565 l~stIdaLQEEKk  577 (776)
                      +...|+.|++.+.
T Consensus       161 ~~~~l~~l~~~r~  173 (200)
T d1i4da_         161 VAIKLKFLEENKI  173 (200)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhH
Confidence            8888888887654