Citrus Sinensis ID: 004064
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LD37 | 764 | Probable cyclic nucleotid | yes | no | 0.949 | 0.964 | 0.643 | 0.0 | |
| Q9LDR2 | 729 | Putative cyclic nucleotid | no | no | 0.932 | 0.993 | 0.593 | 0.0 | |
| Q9SL29 | 678 | Putative cyclic nucleotid | no | no | 0.726 | 0.831 | 0.411 | 1e-120 | |
| Q9FXH6 | 753 | Putative cyclic nucleotid | no | no | 0.707 | 0.729 | 0.412 | 1e-118 | |
| O65717 | 716 | Cyclic nucleotide-gated i | no | no | 0.791 | 0.857 | 0.361 | 1e-116 | |
| Q9M0A4 | 733 | Putative cyclic nucleotid | no | no | 0.712 | 0.754 | 0.410 | 1e-116 | |
| Q9S9N5 | 738 | Putative cyclic nucleotid | no | no | 0.710 | 0.746 | 0.408 | 1e-115 | |
| Q9SJA4 | 726 | Probable cyclic nucleotid | no | no | 0.724 | 0.774 | 0.405 | 1e-115 | |
| Q8L7Z0 | 720 | Probable cyclic nucleotid | no | no | 0.706 | 0.761 | 0.393 | 1e-114 | |
| O82226 | 747 | Probable cyclic nucleotid | no | no | 0.815 | 0.847 | 0.379 | 1e-114 |
| >sp|Q9LD37|CNG20_ARATH Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/755 (64%), Positives = 596/755 (78%), Gaps = 18/755 (2%)
Query: 4 DEKDEMPML--SDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTG 61
+E D++PML SD S++ R + F SR+RS S+S +S + F+ ++G TG
Sbjct: 5 NENDDIPMLPISDPSSRT-------RARAFTSRSRSVSLSNPTSSIEGFDTSTVVLGYTG 57
Query: 62 PLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDD 121
PLR +RR +QMSGPL S RK + +F + V V ++ E++PSF+ ++ + +D
Sbjct: 58 PLRTQRRPPLVQMSGPLTSTRKHEPLFLPHPSSDSVG-VSSQPERYPSFAALEHKNSSED 116
Query: 122 RYEAKNEHLLRSGQLGMCNDPYCTTCPTYY--KATRSKHSKSSGIFDPKFHNALYGDAKG 179
+ K+ +LLRSGQLGMCNDPYCTTCP+YY KA + S+ S +FD FHNALY DAKG
Sbjct: 117 EFVLKHANLLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSALFDSTFHNALYDDAKG 176
Query: 180 WARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVI 239
WARRF SS+ RY+PGIMNPH + VQ W +FF ++CL+AIF+DPLFFFL+ VQ+ NKCI+I
Sbjct: 177 WARRFASSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMI 236
Query: 240 NWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYF 299
+WP TKA V VRS+TD+I+ +NILLQFRLAYVA ES VVGAG+LV HPKKIAL+YL+G F
Sbjct: 237 DWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYLKGKF 296
Query: 300 FIDFFVALPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST 359
F+D F+ +PLPQI+IL ++P LG+SGANYAKNLLRAA+L QYIP+LY+ LP AGQ+ T
Sbjct: 297 FLDLFIVMPLPQILILWIIPAHLGASGANYAKNLLRAAVLFQYIPKLYRLLPFLAGQTPT 356
Query: 360 GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCG 419
GFIFESAWANF INL TF L+GH+VGS WYLFGLQRVNQCLR+AC N ++C+ +DCG
Sbjct: 357 GFIFESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRNACGNFG-RECQDLIDCG 415
Query: 420 HGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWG 479
+GN S +W N A+ CF++D F YGIY +AV LT +++ TRY YSLFWG
Sbjct: 416 NGN-----SSVLVRATWKDNASANACFQEDGFPYGIYLKAVNLTNHSNLFTRYSYSLFWG 470
Query: 480 FQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRR 539
FQQISTLAGNQ PSYF+GEV FTM IIG+GLLLFA LIGNMQNFLQAL KR L+M+LRRR
Sbjct: 471 FQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRR 530
Query: 540 DVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKK 599
DVEQWM HRRLP+ +RR+VREAER+NWAATRGVNE++LF N+P+DLQR+IRRHLFKF+KK
Sbjct: 531 DVEQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKK 590
Query: 600 VRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCL 659
VRIF+LMDEPILDAI ERL+Q+TYI S +L+RGGL+EKMVFIVRG+MESIGEDG + L
Sbjct: 591 VRIFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESIGEDGSVLPL 650
Query: 660 SEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVT 719
EGD CGEELLTWCLE SSVN D R R+P + LL +R VRC+TNVEAFSL AD+E+VT
Sbjct: 651 YEGDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVT 710
Query: 720 SLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAW 754
SLF+RFLRS RVQGAIRY+SPYWR RAA IQVAW
Sbjct: 711 SLFSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAW 745
|
Probable cyclic nucleotide-gated ion channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LDR2|CNG19_ARATH Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|Q9SJA4|CNG14_ARATH Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2 | Back alignment and function description |
|---|
| >sp|Q8L7Z0|CNG17_ARATH Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1 | Back alignment and function description |
|---|
| >sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | ||||||
| 255567305 | 778 | Cyclic nucleotide-gated ion channel, put | 0.994 | 0.992 | 0.733 | 0.0 | |
| 224125770 | 785 | predicted protein [Populus trichocarpa] | 0.987 | 0.975 | 0.699 | 0.0 | |
| 359491793 | 783 | PREDICTED: probable cyclic nucleotide-ga | 0.987 | 0.978 | 0.692 | 0.0 | |
| 359491791 | 779 | PREDICTED: probable cyclic nucleotide-ga | 0.988 | 0.984 | 0.695 | 0.0 | |
| 296088025 | 775 | unnamed protein product [Vitis vinifera] | 0.978 | 0.979 | 0.694 | 0.0 | |
| 296088023 | 777 | unnamed protein product [Vitis vinifera] | 0.979 | 0.978 | 0.692 | 0.0 | |
| 356531094 | 781 | PREDICTED: probable cyclic nucleotide-ga | 0.985 | 0.979 | 0.68 | 0.0 | |
| 356560063 | 772 | PREDICTED: probable cyclic nucleotide-ga | 0.979 | 0.984 | 0.678 | 0.0 | |
| 356560069 | 778 | PREDICTED: probable cyclic nucleotide-ga | 0.992 | 0.989 | 0.667 | 0.0 | |
| 224118056 | 769 | predicted protein [Populus trichocarpa] | 0.963 | 0.972 | 0.689 | 0.0 |
| >gi|255567305|ref|XP_002524633.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223536102|gb|EEF37758.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1186 bits (3069), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/778 (73%), Positives = 646/778 (83%), Gaps = 6/778 (0%)
Query: 1 MAGDEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLT 60
MA +KDE+PMLSD + D N D R Q F SRT+SAS+SI MN+ +S+ EANLVG T
Sbjct: 1 MASYDKDEVPMLSDVHPQLLDENPDSRFQAFVSRTQSASISIPMNTMESYGNEANLVGYT 60
Query: 61 GPLRNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPD 120
GPLR+ERR Q QMSGP+YSNRK D FR N GV + E+KAEK PSFS MDQ+DW D
Sbjct: 61 GPLRSERRAQMNQMSGPIYSNRKADKNFRLNHGVPNRKVAESKAEKIPSFSKMDQHDWAD 120
Query: 121 DRYEAKNEHLLRSGQLGMCNDPYCTTCPTYY--KATRSKHSKSSGIFDPKFHNALYGDAK 178
D+Y KNEHLLRSGQLG+CNDPYCTTCPTYY K KH +S IFD KFHNALYGDAK
Sbjct: 121 DKYTGKNEHLLRSGQLGVCNDPYCTTCPTYYNFKPAEQKHLTASAIFDSKFHNALYGDAK 180
Query: 179 GWARRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIV 238
GWA RF S L+RY+PG+MNPHT++VQQW +F VI CLVAIFVDPLFFF+LSVQQ NKCIV
Sbjct: 181 GWATRFTSFLKRYIPGVMNPHTKVVQQWNKFCVICCLVAIFVDPLFFFMLSVQQENKCIV 240
Query: 239 INWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGY 298
INWP T I+V RSMTD IY LNILLQFRLAY+APESRVVGAGELVDHPKKIA+NYL GY
Sbjct: 241 INWPLTTTIIVFRSMTDFIYLLNILLQFRLAYIAPESRVVGAGELVDHPKKIAMNYLCGY 300
Query: 299 FFIDFFVALPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSS 358
F +D F+ LPLPQIIILLVLPN LGSSGANYAKNLL+AA+L+QY+PRLY+FLPL G S
Sbjct: 301 FLVDLFIMLPLPQIIILLVLPNGLGSSGANYAKNLLQAAVLVQYVPRLYRFLPLLVGVSP 360
Query: 359 TGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSI-QDCKKFLD 417
+GFIFE+AW+NFFINL TF LSGH+VG+ WYLFGLQRVN+CLRDAC +SSI +C +F+D
Sbjct: 361 SGFIFETAWSNFFINLLTFILSGHVVGALWYLFGLQRVNRCLRDACRHSSIWPECMQFID 420
Query: 418 CGHGNGGAEYSQDQTWKSWS-GNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSL 476
CGHGN + + WK+W+ N AS CF +D FSYGI+ QAV LTT +S++TRYVYSL
Sbjct: 421 CGHGNNVERNASNSKWKNWTQSNVNASACFTEDGFSYGIFIQAVNLTTRHSVVTRYVYSL 480
Query: 477 FWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSL 536
FWGFQQISTLAGNQTPSYFV EVLFTMAI+GVGLLLFAFLIGN+QNFLQAL +RRL+MSL
Sbjct: 481 FWGFQQISTLAGNQTPSYFVWEVLFTMAIVGVGLLLFAFLIGNIQNFLQALGRRRLEMSL 540
Query: 537 RRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKF 596
RRRDVEQWM HRRLP++LRR+V EAERYNWAATRGV E ML NLPEDLQR+IRRHLFKF
Sbjct: 541 RRRDVEQWMSHRRLPQELRRKVLEAERYNWAATRGVIEGMLLENLPEDLQRDIRRHLFKF 600
Query: 597 VKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIA 656
VKKV IFALMD LDAICERL+QK YI GS+ILY GGL+EKMVFIVRGK+ESIGEDG
Sbjct: 601 VKKVWIFALMDNHFLDAICERLKQKIYIKGSEILYHGGLVEKMVFIVRGKLESIGEDGTM 660
Query: 657 VCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIE 716
LSEG+ CGEELLTWCLE SSV++D + +IPGQRL+ +RTVRCL+NVEAFSLRAAD+E
Sbjct: 661 FPLSEGNVCGEELLTWCLERSSVSKDGVKVKIPGQRLISSRTVRCLSNVEAFSLRAADLE 720
Query: 717 EVTSLFARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHSLSNQS 774
EVT+LFAR LR RVQGAIRYESPYWR AA IQVAWRYR+KRL TS SNQS
Sbjct: 721 EVTNLFARNLRDSRVQGAIRYESPYWRGLAATRIQVAWRYRQKRLKHISTSR--SNQS 776
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125770|ref|XP_002329713.1| predicted protein [Populus trichocarpa] gi|222870621|gb|EEF07752.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|359491793|ref|XP_003634326.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|359491791|ref|XP_002270141.2| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296088025|emb|CBI35308.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|296088023|emb|CBI35306.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356531094|ref|XP_003534113.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356560063|ref|XP_003548315.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356560069|ref|XP_003548318.1| PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224118056|ref|XP_002317721.1| predicted protein [Populus trichocarpa] gi|222858394|gb|EEE95941.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 776 | ||||||
| TAIR|locus:2090572 | 764 | CNBT1 "cyclic nucleotide-bindi | 0.971 | 0.986 | 0.631 | 4.6e-263 | |
| TAIR|locus:2090562 | 729 | CNGC19 "cyclic nucleotide gate | 0.927 | 0.987 | 0.574 | 2.9e-222 | |
| TAIR|locus:2062814 | 678 | CNGC15 "cyclic nucleotide-gate | 0.725 | 0.830 | 0.399 | 4e-106 | |
| TAIR|locus:2013139 | 753 | CNGC8 "cyclic nucleotide gated | 0.706 | 0.727 | 0.404 | 9.5e-105 | |
| TAIR|locus:2118836 | 733 | CNGC9 "cyclic nucleotide gated | 0.711 | 0.753 | 0.404 | 1.4e-103 | |
| TAIR|locus:2118816 | 720 | CNGC17 "cyclic nucleotide-gate | 0.733 | 0.790 | 0.377 | 6e-103 | |
| TAIR|locus:2200502 | 738 | CNGC7 "cyclic nucleotide gated | 0.711 | 0.747 | 0.400 | 2e-102 | |
| TAIR|locus:2163776 | 716 | CNGC1 "cyclic nucleotide gated | 0.797 | 0.864 | 0.350 | 8.8e-102 | |
| TAIR|locus:2046703 | 726 | CNGC14 "cyclic nucleotide-gate | 0.771 | 0.825 | 0.383 | 6.2e-101 | |
| TAIR|locus:2061401 | 747 | CNGC6 "cyclic nucleotide-gated | 0.712 | 0.740 | 0.392 | 1.3e-100 |
| TAIR|locus:2090572 CNBT1 "cyclic nucleotide-binding transporter 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2531 (896.0 bits), Expect = 4.6e-263, P = 4.6e-263
Identities = 485/768 (63%), Positives = 591/768 (76%)
Query: 4 DEKDEMPMLSDSQSKSSDRNFDFRLQTFASRTRSASMSITMNSTDSFEPEANLVGLTGPL 63
+E D++PML S S R + F SR+RS S+S +S + F+ ++G TGPL
Sbjct: 5 NENDDIPMLPISDPSSRTR-----ARAFTSRSRSVSLSNPTSSIEGFDTSTVVLGYTGPL 59
Query: 64 RNERRTQFLQMSGPLYSNRKPDHIFRRNQGVTGVNLVETKAEKFPSFSGMDQNDWPDDRY 123
R +RR +QMSGPL S RK + +F + V V ++ E++PSF+ ++ + +D +
Sbjct: 60 RTQRRPPLVQMSGPLTSTRKHEPLFLPHPSSDSVG-VSSQPERYPSFAALEHKNSSEDEF 118
Query: 124 EAKNEHLLRSGQLGMCNDPYCTTCPTYY--KATRSKHSKSSGIFDPKFHNALYGDAKGWA 181
K+ +LLRSGQLGMCNDPYCTTCP+YY KA + S+ S +FD FHNALY DAKGWA
Sbjct: 119 VLKHANLLRSGQLGMCNDPYCTTCPSYYNRKAAQIPTSRVSALFDSTFHNALYDDAKGWA 178
Query: 182 RRFISSLQRYVPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINW 241
RRF SS+ RY+PGIMNPH + VQ W +FF ++CL+AIF+DPLFFFL+ VQ+ NKCI+I+W
Sbjct: 179 RRFASSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMIDW 238
Query: 242 PWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPESRVVGAGELVDHPKKIALNYLRGYFFI 301
P TKA V VRS+TD+I+ +NILLQFRLAYVA ES VVGAG+LV HPKKIAL+YL+G FF+
Sbjct: 239 PMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAGQLVSHPKKIALHYLKGKFFL 298
Query: 302 DFFVAXXXXXXXXXXXXXXXXGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSSTGF 361
D F+ G+SGANYAKNLLRAA+L QYIP+LY+ LP AGQ+ TGF
Sbjct: 299 DLFIVMPLPQILILWIIPAHLGASGANYAKNLLRAAVLFQYIPKLYRLLPFLAGQTPTGF 358
Query: 362 IFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHG 421
IFESAWANF INL TF L+GH+VGS WYLFGLQRVNQCLR+AC N ++C+ +DCG+G
Sbjct: 359 IFESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRNACGNFG-RECQDLIDCGNG 417
Query: 422 NGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQ 481
N TWK N A+ CF++D F YGIY +AV LT +++ TRY YSLFWGFQ
Sbjct: 418 NSSVLVRA--TWKD---NASANACFQEDGFPYGIYLKAVNLTNHSNLFTRYSYSLFWGFQ 472
Query: 482 QISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDV 541
QISTLAGNQ PSYF+GEV FTM IIG+GLLLFA LIGNMQNFLQAL KR L+M+LRRRDV
Sbjct: 473 QISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDV 532
Query: 542 EQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFKFVKKVR 601
EQWM HRRLP+ +RR+VREAER+NWAATRGVNE++LF N+P+DLQR+IRRHLFKF+KKVR
Sbjct: 533 EQWMSHRRLPDGIRRRVREAERFNWAATRGVNEELLFENMPDDLQRDIRRHLFKFLKKVR 592
Query: 602 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSE 661
IF+LMDEPILDAI ERL+Q+TYI S +L+RGGL+EKMVFIVRG+MESIGEDG + L E
Sbjct: 593 IFSLMDEPILDAIRERLKQRTYIGSSTVLHRGGLVEKMVFIVRGEMESIGEDGSVLPLYE 652
Query: 662 GDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSL 721
GD CGEELLTWCLE SSVN D R R+P + LL +R VRC+TNVEAFSL AD+E+VTSL
Sbjct: 653 GDVCGEELLTWCLERSSVNPDGTRIRMPSKGLLSSRNVRCVTNVEAFSLSVADLEDVTSL 712
Query: 722 FARFLRSPRVQGAIRYESPYWRCRAAIVIQVAWRYRKKRLNRADTSHS 769
F+RFLRS RVQGAIRY+SPYWR RAA IQVAWRYR++RL+R T S
Sbjct: 713 FSRFLRSHRVQGAIRYDSPYWRLRAARQIQVAWRYRRRRLHRLCTPQS 760
|
|
| TAIR|locus:2090562 CNGC19 "cyclic nucleotide gated channel 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2062814 CNGC15 "cyclic nucleotide-gated channel 15" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2118816 CNGC17 "cyclic nucleotide-gated channel 17" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2046703 CNGC14 "cyclic nucleotide-gated channel 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LD37 | CNG20_ARATH | No assigned EC number | 0.6437 | 0.9497 | 0.9646 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
 |
 |
 |
 |
 |
 |
 |
 |
 |
 | fgenesh4_pg.C_scaffold_122000082 | SubName- Full=Putative uncharacterized protein; (785 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 776 | |||
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 2e-08 | |
| PLN03192 | 823 | PLN03192, PLN03192, Voltage-dependent potassium ch | 3e-07 | |
| smart00100 | 120 | smart00100, cNMP, Cyclic nucleotide-monophosphate | 0.001 |
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-08
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 24/122 (19%)
Query: 602 IFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESI-----GEDGIA 656
+F+ +D+ L+ + + L ++ + +G I+ +G + + ++ G +E G + I
Sbjct: 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60
Query: 657 VCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIE 716
L GD GE L S+ TVR LT+ E L +D
Sbjct: 61 GFLGPGDLFGELALLGNGPRSA-------------------TVRALTDSELLVLPRSDFR 101
Query: 717 EV 718
+
Sbjct: 102 RL 103
|
In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115 |
| >gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 100.0 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 100.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 100.0 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 100.0 | |
| KOG3713 | 477 | consensus Voltage-gated K+ channel KCNB/KCNC [Inor | 99.59 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.35 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.31 | |
| PF00520 | 200 | Ion_trans: Ion transport protein calcium channel s | 99.29 | |
| KOG1545 | 507 | consensus Voltage-gated shaker-like K+ channel KCN | 99.26 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.23 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.19 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.13 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.13 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.1 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.09 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.09 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.08 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.04 | |
| KOG1419 | 654 | consensus Voltage-gated K+ channel KCNQ [Inorganic | 99.03 | |
| PF08412 | 77 | Ion_trans_N: Ion transport protein N-terminal; Int | 99.0 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 98.99 | |
| KOG1420 | 1103 | consensus Ca2+-activated K+ channel Slowpoke, alph | 98.91 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 98.91 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 98.89 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 98.87 | |
| PF07885 | 79 | Ion_trans_2: Ion channel; InterPro: IPR013099 This | 98.84 | |
| KOG4390 | 632 | consensus Voltage-gated A-type K+ channel KCND [In | 98.82 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 98.8 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.56 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 98.11 | |
| KOG3684 | 489 | consensus Ca2+-activated K+ channel proteins (inte | 97.68 | |
| PF01007 | 336 | IRK: Inward rectifier potassium channel; InterPro: | 97.57 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.37 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 97.08 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.94 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 96.89 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 96.78 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 96.63 | |
| PLN03223 | 1634 | Polycystin cation channel protein; Provisional | 96.52 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 96.39 | |
| KOG3827 | 400 | consensus Inward rectifier K+ channel [Inorganic i | 96.23 | |
| KOG2302 | 1956 | consensus T-type voltage-gated Ca2+ channel, pore- | 96.09 | |
| KOG4404 | 350 | consensus Tandem pore domain K+ channel TASK3/THIK | 94.85 | |
| KOG3193 | 1087 | consensus K+ channel subunit [Inorganic ion transp | 93.85 | |
| KOG2301 | 1592 | consensus Voltage-gated Ca2+ channels, alpha1 subu | 92.45 | |
| KOG1418 | 433 | consensus Tandem pore domain K+ channel [Inorganic | 91.24 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 88.27 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 86.58 | |
| KOG3614 | 1381 | consensus Ca2+/Mg2+-permeable cation channels (LTR | 82.26 |
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-92 Score=809.18 Aligned_cols=506 Identities=42% Similarity=0.792 Sum_probs=452.1
Q ss_pred CCeeEcCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEE
Q 004064 192 VPGIMNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYV 271 (776)
Q Consensus 192 ~~~ii~P~S~~~~~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~ 271 (776)
..+||+|+|+++..||.+++++++|+++++|++++|+..+++..| +|......+.+++.++|++|++||++||+|||+
T Consensus 66 ~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv 143 (727)
T KOG0498|consen 66 RKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYV 143 (727)
T ss_pred cceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEE
Confidence 356999999999999999999999999999999999999888888 888889999999999999999999999999999
Q ss_pred cCCccccCCCeEeeCHHHHHHHHHhhhHHHHHHhhcCHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHhhhHHHHHHhh
Q 004064 272 APESRVVGAGELVDHPKKIALNYLRGYFFIDFFVALPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLP 351 (776)
Q Consensus 272 ~~~~~~~~~g~lV~d~k~Ia~~Ylk~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~lLRl~rll~~l~Rl~ri~~ 351 (776)
+++| .++|.||++||+||+++||++|++|++|+++|+++.++. ..........|..+.+++++|||.|+.+
T Consensus 144 ~~~s-----~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~rL~Rl~Rv~~ 214 (727)
T KOG0498|consen 144 DPSS-----YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQRLPRLRRVIP 214 (727)
T ss_pred CCCC-----ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9854 379999999999999999999999999999998876541 1111122223444555667789999999
Q ss_pred hhhccccc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCcccccccccCCCCCCCCccccC
Q 004064 352 LFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQD 430 (776)
Q Consensus 352 l~~~~~~~-~~~~~~~~~~~i~~l~~~ll~~H~~aCiwy~i~~~~~~~c~~~~c~~~~~~~C~~~~~~g~~~~~~~~~~~ 430 (776)
+++++++. +..++++|+.++++|+++++++||.||+||++|..+...||+++
T Consensus 215 l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------------------------- 267 (727)
T KOG0498|consen 215 LFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------------------------- 267 (727)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc---------------------------
Confidence 99999987 88999999998899999999999999999999999887787664
Q ss_pred ccccccccccc-CccccccCccccchhhhhhhcccCCcHHHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHH
Q 004064 431 QTWKSWSGNQQ-ASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVG 509 (776)
Q Consensus 431 ~~~~sWl~~~~-~~~c~~~~~~~ygiy~~~~~l~~~~~~~~~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G 509 (776)
+|+.... ...|. +..|+||+| ++..+|++|+||+++||||+|||+++++|..|++|+|++|++|
T Consensus 268 ----tw~~~l~~~~~~~-~~~~~fg~~----------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~G 332 (727)
T KOG0498|consen 268 ----TWLGSLGRLLSCY-NLSFTFGIY----------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFG 332 (727)
T ss_pred ----ccccccccccccC-cccccccch----------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHh
Confidence 2333211 01121 112567774 5566999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHH
Q 004064 510 LLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREI 589 (776)
Q Consensus 510 ~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI 589 (776)
+++||++||||+++++.+..+.++|+.+++++++||++++||++||+||++|++|.|..++|+||+++|++||+.||++|
T Consensus 333 llL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI 412 (727)
T KOG0498|consen 333 LLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDI 412 (727)
T ss_pred HHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCc----eEEEcCCCCe
Q 004064 590 RRHLFK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG----IAVCLSEGDA 664 (776)
Q Consensus 590 ~~~~~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g----~i~~l~~G~~ 664 (776)
..|+|. +++++|+|+++|++++.+|+.+++...|.|||+|++|||++++||||.+|.+++...+| ....|++||+
T Consensus 413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~ 492 (727)
T KOG0498|consen 413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDF 492 (727)
T ss_pred HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCc
Confidence 999999 99999999999999999999999999999999999999999999999999999998664 8899999999
Q ss_pred eechhhhhhccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccCHHHHHHHhhhChhhhh
Q 004064 665 CGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAIRYESPYWRC 744 (776)
Q Consensus 665 fGe~~ll~~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~r~~s~~~~~ 744 (776)
|||+.+.|+++ . ++++||+|+|.|+++.|+++||.+++++|| .+++..+++.+++++.+||.
T Consensus 493 ~GeEl~~~~~~------------~-----p~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~ 554 (727)
T KOG0498|consen 493 FGEELLTWCLD------------L-----PQTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRT 554 (727)
T ss_pred cchHHHHHHhc------------C-----CCCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhh
Confidence 99887777531 2 468999999999999999999999999996 67777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccC
Q 004064 745 RAAIVIQVAWRYRKKRLNRADTSH 768 (776)
Q Consensus 745 ~a~~~iq~~~~~~~~r~~~~~~~~ 768 (776)
+++..+|++|+++.+|+.....+.
T Consensus 555 ~aa~~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 555 WAACFIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred hhhhhHHHHHHHHHHhhccchhhh
Confidence 999999999999999886554444
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins | Back alignment and domain information |
|---|
| >KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] | Back alignment and domain information |
|---|
| >KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
| >KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03223 Polycystin cation channel protein; Provisional | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 776 | ||||
| 1wgp_A | 137 | Solution Structure Of The Cnmp-Binding Domain From | 2e-18 | ||
| 3ukn_A | 212 | Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN | 3e-09 | ||
| 3etq_A | 204 | X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 | 6e-06 | ||
| 3u0z_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 8e-06 | ||
| 3u10_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 2e-05 | ||
| 1q3e_A | 207 | Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | 2e-05 | ||
| 3ffq_A | 202 | Hcn2i 443-640 Apo-State Length = 202 | 3e-05 | ||
| 2q0a_A | 200 | Structure And Rearrangements In The Carboxy-Termina | 3e-05 | ||
| 2ptm_A | 198 | Structure And Rearrangements In The Carboxy-Termina | 3e-05 | ||
| 3u11_A | 210 | Tetramerization Dynamics Of The C-Terminus Underlie | 4e-05 | ||
| 3otf_A | 220 | Structural Basis For The Camp-Dependent Gating In H | 5e-05 | ||
| 3bpz_A | 202 | Hcn2-I 443-460 E502k In The Presence Of Camp Length | 8e-05 | ||
| 4hbn_A | 205 | Crystal Structure Of The Human Hcn4 Channel C-termi | 2e-04 |
| >pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 | Back alignment and structure |
|
| >pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212 | Back alignment and structure |
| >pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204 | Back alignment and structure |
| >pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207 | Back alignment and structure |
| >pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202 | Back alignment and structure |
| >pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200 | Back alignment and structure |
| >pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198 | Back alignment and structure |
| >pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210 | Back alignment and structure |
| >pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human Hcn4 Channel Length = 220 | Back alignment and structure |
| >pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202 | Back alignment and structure |
| >pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 7e-61
Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 17/205 (8%)
Query: 524 LQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPE 583
Q + RR R +D++ ++R RLP+ L +++ E + W+ G++ L + P+
Sbjct: 4 DQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPD 63
Query: 584 DLQREIRRHLFKFVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIV 643
+L+ +I HL K + ++ +F L ++ ++ G ++ +G ++ + F+
Sbjct: 64 ELRADIAMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVC 123
Query: 644 RGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLT 703
G ME + ++ + L +GD G + LT + K N V+ LT
Sbjct: 124 SGSMEVLKDNTVLAILGKGDLIGSDSLTK-------EQVIKT----------NANVKALT 166
Query: 704 NVEAFSLRAADIEEVTSLFARFLRS 728
+ + + EV L+ + +
Sbjct: 167 YCDLQYISLKGLREVLRLYPEYAQK 191
|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.98 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.97 | |
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.96 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.96 | |
| 1orq_C | 223 | Potassium channel; voltage-dependent, KVAP, FAB co | 99.87 | |
| 2r9r_B | 514 | Paddle chimera voltage gated potassium channel KV; | 99.8 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.76 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.67 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.58 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.57 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.56 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.56 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.55 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.53 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.52 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.52 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.52 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.52 | |
| 2a9h_A | 155 | Voltage-gated potassium channel; potassium channel | 99.51 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.5 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.49 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.48 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.48 | |
| 3vou_A | 148 | ION transport 2 domain protein, voltage-gated SOD | 99.48 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.47 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.46 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.45 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.45 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.43 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.43 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.42 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.41 | |
| 4h33_A | 137 | LMO2059 protein; bilayers, KVLM, lipidic cubic pha | 99.41 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.4 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.4 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.39 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.39 | |
| 2ih3_C | 122 | Voltage-gated potassium channel; ION channel D-ami | 99.37 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.36 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.35 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.33 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.33 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.33 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.32 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.31 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.31 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.29 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.27 | |
| 3eff_K | 139 | Voltage-gated potassium channel; FULL length KCSA, | 99.26 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.26 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.26 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.21 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.19 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.18 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.17 | |
| 3rvy_A | 285 | ION transport protein; tetrameric ION channel, vol | 99.13 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.13 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.13 | |
| 2q67_A | 114 | Potassium channel protein; inverted teepee, helix | 99.06 | |
| 2k1e_A | 103 | Water soluble analogue of potassium channel, KCSA; | 99.04 | |
| 3ouf_A | 97 | Potassium channel protein; ION channel, membrane, | 98.98 | |
| 3ldc_A | 82 | Calcium-gated potassium channel MTHK; transmembran | 98.91 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 98.85 | |
| 3pjs_K | 166 | KCSA, voltage-gated potassium channel; ION channel | 98.76 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 98.76 | |
| 1xl4_A | 301 | Inward rectifier potassium channel; integral membr | 98.65 | |
| 1p7b_A | 333 | Integral membrane channel and cytosolic domains; t | 98.56 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.52 | |
| 2qks_A | 321 | KIR3.1-prokaryotic KIR channel chimera; G-protein | 98.46 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 98.3 | |
| 3sya_A | 340 | G protein-activated inward rectifier potassium CH; | 98.3 | |
| 4dxw_A | 229 | Navrh, ION transport protein; tetrameric, voltage- | 98.24 | |
| 3spc_A | 343 | Inward-rectifier K+ channel KIR2.2; PIP, membrane | 98.21 | |
| 3um7_A | 309 | Potassium channel subfamily K member 4; potassium | 98.19 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.16 | |
| 3ukm_A | 280 | Potassium channel subfamily K member 1; membrane p | 98.08 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.88 | |
| 2kyh_A | 147 | KVAP, voltage-gated potassium channel; ION channel | 97.75 | |
| 1ors_C | 132 | Potassium channel; voltage-dependent, voltage sens | 97.47 |
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-33 Score=306.68 Aligned_cols=329 Identities=19% Similarity=0.191 Sum_probs=130.2
Q ss_pred EcCCChHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCceeeecCccchhHHHHHHHHHHHHHHHHHHhcceeEEcCCc
Q 004064 196 MNPHTRIVQQWKQFFVITCLVAIFVDPLFFFLLSVQQNNKCIVINWPWTKAIVVVRSMTDLIYFLNILLQFRLAYVAPES 275 (776)
Q Consensus 196 i~P~S~~~~~Wd~~~~i~~l~~~~~iPl~~~f~~~~~~~~~~~~~~~~~~~~~~~~~i~d~if~lDI~l~F~tay~~~~~ 275 (776)
++|+|+.. +.+++++++++++++.+.. .+. ........+..++.++-++|++|+++++..+. +
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~t-~~~---------~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~-~--- 65 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAALT-IPD---------MSGRSRLALAALLAVIWGAYLLQLAATLLKRR-A--- 65 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHHT-SSS---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-S---
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHHc-ccc---------hhhhHHHHHHHHHhHHHHHHHHHHHHhccccc-c---
Confidence 46777753 5555566666666655542 111 11111223445556666678999999884321 1
Q ss_pred cccCCCeEeeCHHHHHHHHHhh-hHHHHHHhh-cCHHHHHHHHhcCccCCCcchhHHHHHHHHHHHHhhhHHHHHHhhhh
Q 004064 276 RVVGAGELVDHPKKIALNYLRG-YFFIDFFVA-LPLPQIIILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLF 353 (776)
Q Consensus 276 ~~~~~g~lV~d~k~Ia~~Ylk~-~F~~Dlis~-lP~~~i~~~~~~~~~~~~~~~~~~~~lLRl~rll~~l~Rl~ri~~l~ 353 (776)
...|.+. |.++|++++ +|+..++. + .... .|++|++|++ |+.|..+.+
T Consensus 66 ---------------~~~~~~~~~~i~Dl~~i~~p~~~~~~----~----~~~~---~r~lr~~R~l----rl~r~~~~~ 115 (355)
T 3beh_A 66 ---------------GVVRDRTPKIAIDVLAVLVPLAAFLL----D----GSPD---WSLYCAVWLL----KPLRDSTFF 115 (355)
T ss_dssp ---------------CSSCCCHHHHHHHHHHHHHHHHHHHS----C----CSGG---GGGGGGGGGS----HHHHTCSSH
T ss_pred ---------------cceeccCcchHHHHHHHHHHHHHHHh----c----cchh---HHHHHHHHHH----HHHHHHHHH
Confidence 1124434 899999999 68854321 1 1112 2233333222 333333332
Q ss_pred hcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccCCcccccccccCCCCCCCCccccCccc
Q 004064 354 AGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTW 433 (776)
Q Consensus 354 ~~~~~~~~~~~~~~~~~i~~l~~~ll~~H~~aCiwy~i~~~~~~~c~~~~c~~~~~~~C~~~~~~g~~~~~~~~~~~~~~ 433 (776)
+.+.. ........++..++++++++|+.||++|.+..
T Consensus 116 ~~l~~---~l~~~~~~l~~~~~~~~~~~~~~a~~~~~~e~---------------------------------------- 152 (355)
T 3beh_A 116 PVLGR---VLANEARNLIGVTTLFGVVLFAVALAAYVIER---------------------------------------- 152 (355)
T ss_dssp HHHHH---HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------------------------------
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------
Confidence 22211 11112233444555566788999999998752
Q ss_pred ccccccccCccccccCccccchhhhhhhcccCCcHHHHHHHHHHHHhhhhccccCCCccccchhhhHHHHHHHHHHHHHH
Q 004064 434 KSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLF 513 (776)
Q Consensus 434 ~sWl~~~~~~~c~~~~~~~ygiy~~~~~l~~~~~~~~~Yl~slYwa~~t~tTvGygdi~~~~~~E~i~~i~i~i~G~~~f 513 (776)
|.. ++.+..|..|+||+++||||+||||+.|.+..|++++++++++|++++
T Consensus 153 --~~~---------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~ 203 (355)
T 3beh_A 153 --DIQ---------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIF 203 (355)
T ss_dssp --TTC---------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred --CCC---------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 110 122346899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHH
Q 004064 514 AFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHL 593 (776)
Q Consensus 514 a~iig~i~~il~~~~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~ 593 (776)
++.+|.+++.+.+..+++ ++.+
T Consensus 204 ~~~~~~i~~~~~~~~~~~----------------------------~~~~------------------------------ 225 (355)
T 3beh_A 204 GLWAGILATGFYQEVRRG----------------------------DFVR------------------------------ 225 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------------HHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH----------------------------hhcc------------------------------
Confidence 999999988775321110 0000
Q ss_pred HH-hhhhhhhcccCCHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhh
Q 004064 594 FK-FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTW 672 (776)
Q Consensus 594 ~~-~l~~~~~F~~ls~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~ 672 (776)
.. .++++++|++++++.+++++..++.+.|+|||.|+++||.++++|||.+|.|+++..+ ...+.+|++|||.+++.
T Consensus 226 ~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~--~~~l~~G~~fGe~~~l~ 303 (355)
T 3beh_A 226 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN--PVELGPGAFFGEMALIS 303 (355)
T ss_dssp HHC-----------------------------------------------------------------------------
T ss_pred cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC--eeEECCCCEEeehHHhC
Confidence 23 6788999999999999999999999999999999999999999999999999998755 46899999999998874
Q ss_pred hccccccccccccccCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHh
Q 004064 673 CLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLF 722 (776)
Q Consensus 673 ~~~~~~~~~~~~k~~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~ 722 (776)
+ . ++.++++|.++|+++.|++++|.++++++
T Consensus 304 ~--------------~-----~~~~~~~A~~~~~l~~i~~~~f~~ll~~~ 334 (355)
T 3beh_A 304 G--------------E-----PRSATVSAATTVSLLSLHSADFQMLCSSS 334 (355)
T ss_dssp --------------------------------------------------
T ss_pred C--------------C-----CcceEEEECccEEEEEEeHHHHHHHHHHC
Confidence 2 1 47899999999999999999999999999
|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A | Back alignment and structure |
|---|
| >2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A | Back alignment and structure |
|---|
| >2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A | Back alignment and structure |
|---|
| >3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A | Back alignment and structure |
|---|
| >3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* | Back alignment and structure |
|---|
| >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} | Back alignment and structure |
|---|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
| >3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* | Back alignment and structure |
|---|
| >4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} | Back alignment and structure |
|---|
| >3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* | Back alignment and structure |
|---|
| >3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} | Back alignment and structure |
|---|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
| >2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} | Back alignment and structure |
|---|
| >1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 776 | ||||
| d1wgpa_ | 137 | b.82.3.2 (A:) Probable cyclic nucleotide-gated ion | 5e-15 | |
| d1q3ea_ | 193 | b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu | 2e-11 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 5e-05 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 2e-04 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 2e-04 | |
| d1lnqa2 | 80 | f.14.1.1 (A:19-98) Potassium channel-related prote | 5e-04 | |
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 0.003 |
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Probable cyclic nucleotide-gated ion channel 6 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.4 bits (171), Expect = 5e-15
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 16/135 (11%)
Query: 596 FVKKVRIFALMDEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDG- 654
V++V +F MDE +LDAICERL+ + S ++ G + +M+FI+RG++ES+ DG
Sbjct: 7 GVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGG 66
Query: 655 -----IAVCLSEGDACGEELLTWCLEHSSVNRDAKRYRIPGQRLLCNRTVRCLTNVEAFS 709
L EGD CG+ELLTW L+ S + RTV+ LT VEAF+
Sbjct: 67 RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPS----------STRTVKALTEVEAFA 116
Query: 710 LRAADIEEVTSLFAR 724
L A +++ V S F R
Sbjct: 117 LIADELKFVASQFRR 131
|
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193 | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80 | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 776 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.96 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.72 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.67 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.64 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.63 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.63 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.62 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.61 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.6 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.55 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.5 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.44 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.39 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.35 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.34 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.32 | |
| d1r3jc_ | 103 | Potassium channel protein {Streptomyces coelicolor | 99.23 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.2 | |
| d1xl4a2 | 116 | Inward rectifier potassium channel kirbac3.1 {Magn | 99.06 | |
| d1p7ba2 | 116 | Inward rectifier potassium channel Kirbac1.1 {Burk | 98.9 | |
| d1lnqa2 | 80 | Potassium channel-related protein MthK {Archaeon M | 98.55 | |
| d1orsc_ | 132 | Potassium channel KVAP {Archaeon Aeropyrum pernix | 97.11 | |
| d2h8pc1 | 57 | Potassium channel protein {Streptomyces coelicolor | 96.12 | |
| d1yhfa1 | 112 | Hypothetical protein SPy1581 {Streptococcus pyogen | 80.78 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=7.2e-29 Score=246.43 Aligned_cols=182 Identities=24% Similarity=0.364 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcCCChhHHHhcCChhhHHHHHHHHHH-hhhhhhhcccC
Q 004064 528 VKRRLDMSLRRRDVEQWMRHRRLPEQLRRQVREAERYNWAATRGVNEDMLFTNLPEDLQREIRRHLFK-FVKKVRIFALM 606 (776)
Q Consensus 528 ~~~~~~~~~~~~~v~~ym~~~~lp~~L~~rV~~y~~y~w~~~~~~~e~~il~~Lp~~Lr~eI~~~~~~-~l~~~~~F~~l 606 (776)
++.+.+|+++++.+++||+.++||.+|+.||++||+|.|. .++.+++++++.||+.|+.++..+++. +++++|+|+++
T Consensus 1 ds~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~ 79 (193)
T d1q3ea_ 1 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANA 79 (193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTS
T ss_pred ChhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh-cccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhh
Confidence 3578899999999999999999999999999999999995 578899999999999999999999999 99999999999
Q ss_pred CHHHHHHHHhHceeeEecCCCEEEccCCccCEEEEEEeeEEEEEecCceEEEcCCCCeeechhhhhhccccccccccccc
Q 004064 607 DEPILDAICERLRQKTYISGSKILYRGGLIEKMVFIVRGKMESIGEDGIAVCLSEGDACGEELLTWCLEHSSVNRDAKRY 686 (776)
Q Consensus 607 s~~~l~~L~~~l~~~~y~~ge~I~~~Ge~~~~lyfI~~G~V~v~~~~g~i~~l~~G~~fGe~~ll~~~~~~~~~~~~~k~ 686 (776)
+++++.+|+..++...|.||++|+++|+.++.+|||.+|.|+++.+++....+.+|++|||.+++.+
T Consensus 80 ~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~~~~l~~G~~fGe~~~~~~------------- 146 (193)
T d1q3ea_ 80 DPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKEMKLSDGSYFGEICLLTR------------- 146 (193)
T ss_dssp CHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCCEEEECTTCEECHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcceeeeccceeeeeeeccCC-------------
Confidence 9999999999999999999999999999999999999999999987777888999999999999853
Q ss_pred cCCCCcccceeEEEEcCeEEEEEeeHHHHHHHHHHhHhhccCHHHHHHH
Q 004064 687 RIPGQRLLCNRTVRCLTNVEAFSLRAADIEEVTSLFARFLRSPRVQGAI 735 (776)
Q Consensus 687 ~~p~~~~~~~~tv~Alt~~el~~L~~~df~~ll~~~~~~l~~p~~~~~~ 735 (776)
. ++.++++|+++|+++.|++++|.++++.| |.+.+.+
T Consensus 147 ----~--~~~~~~~a~~~~~l~~l~~~~f~~ll~~~------p~~~~~~ 183 (193)
T d1q3ea_ 147 ----G--RRTASVRADTYCRLYSLSVDNFNEVLEEY------PMMRRAF 183 (193)
T ss_dssp ----S--BCSSEEEESSCEEEEEEEHHHHHHHHHHS------GGGHHHH
T ss_pred ----C--cccccceecCceEEEEEeHHHHHHHHHHC------HHHHHHH
Confidence 1 47899999999999999999999999999 7655544
|
| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
| >d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} | Back information, alignment and structure |
|---|
| >d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} | Back information, alignment and structure |
|---|
| >d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
| >d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|