Citrus Sinensis ID: 004077
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | no | no | 0.940 | 0.963 | 0.457 | 0.0 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.96 | 0.96 | 0.410 | 1e-151 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.887 | 0.941 | 0.370 | 1e-126 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.894 | 0.925 | 0.384 | 1e-125 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.554 | 0.533 | 0.265 | 5e-26 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.513 | 0.209 | 0.245 | 1e-09 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.509 | 0.207 | 0.246 | 3e-09 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.513 | 0.202 | 0.243 | 5e-09 | |
| Q02470 | 1902 | PII-type proteinase OS=La | N/A | no | 0.411 | 0.167 | 0.249 | 1e-08 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.114 | 0.201 | 0.382 | 4e-06 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/787 (45%), Positives = 482/787 (61%), Gaps = 58/787 (7%)
Query: 5 FIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEK-ALHEIQETHHSYLLSVKDNEEEARA 63
F L L SS+ + YIVH S LH + S L S+ D+ E
Sbjct: 11 FFLLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLH--SNWYDSSLRSISDSAE---- 64
Query: 64 SHLYSYKHSINGFSAVLTPDEAARLSEE--VVSVYPSHPEKYSLQTTRSWEFVGLDEVAK 121
LY+Y+++I+GFS LT +EA L + V+SV P H +Y L TTR+ F+GLDE
Sbjct: 65 -LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEH--RYELHTTRTPLFLGLDE--- 118
Query: 122 QNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF 181
DL +A DV+VG++D GVWPESKS+SDEG GP+P SWKG C+ G F
Sbjct: 119 -------HTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNF 171
Query: 182 NSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAF 241
+SLCN+K+IGAR++ +G+E GP++ +++ RSPRD DGHGTHT+ST AG V AS
Sbjct: 172 TASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLL 231
Query: 242 GGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301
G +A GTA G AP AR+A+YK CW CF +D+LAAID AI D V+VLS+S
Sbjct: 232 G-YASGTARGMAPRARVAVYKVCWL---------GGCFSSDILAAIDKAIADNVNVLSMS 281
Query: 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRD 361
+G + RDG+AIGA A++ ILV+CSAGN+GP+ SSLSN+APW+ TVGAG+LDRD
Sbjct: 282 LGGGMS-DYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRD 340
Query: 362 FVGPVVLGTGMEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV 419
F +LG G G ++ K+ P +YA + + N C+ G+L PEKV
Sbjct: 341 FPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNAS----NATNGNLCMTGTLIPEKV 396
Query: 420 KGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIK 479
KGKIV+C RG ++ KG VK AGGVG+IL N+ ANG E DAH LPAT V
Sbjct: 397 KGKIVMCDRGINARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDI 456
Query: 480 IHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 539
I Y+ + NPTA I TV+ +P+P +A F+SRGPN++ P ILKPD+ APG+NILAA
Sbjct: 457 IRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAA 516
Query: 540 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599
W+ A+ P+ LA D R V++ I SGTSMSCPHV+ AALLK++HP+WS AAIRSALMTTA+
Sbjct: 517 WTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAY 576
Query: 600 MKNNKALPITN-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN 658
P+ + A G +TPF G+GH PT A +PGL+YD + EDYL +LC+ ++T+
Sbjct: 577 KTYKDGKPLLDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCA--LNYTS 634
Query: 659 PVFRC---------PNKPPSALNLNYPSIAIPNLNGTVIVK--RTVTNVGGSKSVYFFSA 707
P R P+K S +LNYPS A+ N++G K RTVT+VGG+ +
Sbjct: 635 PQIRSVSRRNYTCDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAGTYSVKVT 693
Query: 708 KPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVR 767
GV + P++L F +KKS+T+T + S + FG W+DG H+V
Sbjct: 694 SETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKP----SGSNSFGSIEWSDGKHVVG 749
Query: 768 SPMAVSF 774
SP+A+S+
Sbjct: 750 SPVAISW 756
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 536 bits (1382), Expect = e-151, Method: Compositional matrix adjust.
Identities = 325/792 (41%), Positives = 451/792 (56%), Gaps = 48/792 (6%)
Query: 5 FIFFLFLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYL----LSVKDNEEE 60
F+ +FLL +SS QKQ YIV + K + H S+L L V++ EEE
Sbjct: 7 FLCIIFLLFCSSSSEILQKQTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEE 66
Query: 61 ARASHLYSYKHSINGFSAVLTPDEAA--RLSEEVVSVYPSHPEKYSLQTTRSWEFVGLDE 118
+ LYSY +I GF+A LT EA R S EVV+V P H +QTT S++F+GLD
Sbjct: 67 PSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDH--VLQVQTTYSYKFLGLDG 124
Query: 119 VAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTG 178
+ SK+R+GQ I+G++D GVWPES SF D GM +P+ WKGICQ G
Sbjct: 125 FGNSG---------VWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEG 175
Query: 179 VAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR---SPRDMDGHGTHTASTVAGRRV 235
+F+SS CN+K+IGAR++++G P + R S RD GHGTHTASTV G V
Sbjct: 176 ESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTASTVGGSSV 235
Query: 236 PNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 295
A+ G A G A G AP A +A+YK CW N C+ +D+LAAID AI+D V
Sbjct: 236 SMANVLGNGA-GVARGMAPGAHIAVYKVCWF---------NGCYSSDILAAIDVAIQDKV 285
Query: 296 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
VLS+S+G P D IAIG A++ I V C+AGN+GP SS++N APW+ T+GA
Sbjct: 286 DVLSLSLG-GFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGA 344
Query: 356 GSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLT 415
G+LDR F V L G + G+++ P K + +V+ + CL GSL
Sbjct: 345 GTLDRRFPAVVRLANGKLLYGESLYPG--KGIKNAGREVEVIYVTGGDKGSEFCLRGSLP 402
Query: 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYD 475
E+++GK+V+C RG + KG VK AGGV +IL N+ N E S D H LPAT + Y
Sbjct: 403 REEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPATLIGYT 462
Query: 476 DAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 535
+++ + Y+ +T P A I TV+ AP +A F++RGP+ +P ILKPD+ APG+N
Sbjct: 463 ESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVN 522
Query: 536 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALM 595
I+AAW + P+ L +D R V +T+ SGTSMSCPHV+ AL+++ +P+WS AAI+SALM
Sbjct: 523 IIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALM 582
Query: 596 TTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFS 655
TTA + + + I + + A F+ G+GH P KA +PGLVY+ DY+ YLC+ GF+
Sbjct: 583 TTADLYDRQGKAIKDGNKP-AGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFT 641
Query: 656 ------FTNPVFRCPN--KPPSALNLNYPSIAIPNLNG--TVIVKRTVTNVGGSKSVYFF 705
T+ C + +LNYPSIA+ G T ++ R VTNVG S+Y
Sbjct: 642 RSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSV 701
Query: 706 SAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHL 765
+ K P G+ V NP L F H+ Q S+ + L + R G + G W + +L
Sbjct: 702 NVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVL-KKKNRGGKVASFAQGQLTWVNSHNL 760
Query: 766 ---VRSPMAVSF 774
VRSP++V+
Sbjct: 761 MQRVRSPISVTL 772
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 286/771 (37%), Positives = 418/771 (54%), Gaps = 83/771 (10%)
Query: 18 SAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFS 77
S K +YIV+ G + H HH +L A S L++YK S NGF+
Sbjct: 26 SDDDGKNIYIVYMGRKLEDPDSAH----LHHRAMLEQVVGSTFAPESVLHTYKRSFNGFA 81
Query: 78 AVLTPDEAARLS--EEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLS 135
LT +EA +++ E VVSV+ + E L TTRSW+F+G +
Sbjct: 82 VKLTEEEAEKIASMEGVVSVFLN--EMNELHTTRSWDFLGFPLTVPR------------- 126
Query: 136 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARY 195
+++ +++VG++D G+WPES SF DEG P P WKG C+T F CN+KIIGAR
Sbjct: 127 RSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARS 183
Query: 196 YLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPL 255
Y G G +N PRD +GHGTHTAST AG V A+ +G GTA GG PL
Sbjct: 184 YHIGRPISPGDVNG------PRDTNGHGTHTASTAAGGLVSQANLYG-LGLGTARGGVPL 236
Query: 256 ARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGI 315
AR+A YK CW + C + D+LAA DDAI DGV ++S+S+G P + D I
Sbjct: 237 ARIAAYKVCW---------NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 287
Query: 316 AIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 375
AIG+ +AV+ IL + SAGN GP + ++L+PWL++V A ++DR FV V +G G
Sbjct: 288 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 347
Query: 376 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKL 434
G ++ ++ + +PLV D+ G ++ + C S+ P +KGKIV+C G +
Sbjct: 348 GVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 406
Query: 435 SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAII 494
K ++ G G+++ +N +Y+ D++ LP++ + +D + YI S +P A I
Sbjct: 407 FKSLD----GAAGVLM---TSNTRDYA-DSYPLPSSVLDPNDLLATLRYIYSIRSPGATI 458
Query: 495 KQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKR 554
++ T+L+ AP + +F+SRGPN ++KPDI+ PG+ ILAAW + + +R
Sbjct: 459 FKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGI---RR 514
Query: 555 IVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 614
+ I SGTSMSCPH+ A +K +P WS AAI+SALMTTA N + P
Sbjct: 515 NTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNP------- 567
Query: 615 IATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFR-------CPNKP 667
F++GSGH P KA PGLVYDA+ DY+ +LC G++ T V R C +
Sbjct: 568 -QAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYN-TQAVRRITGDYSACTSGN 625
Query: 668 PSAL-NLNYPSIAI---PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILF 723
+ +LNYPS + P+ RT+T+V S Y P G+++ NP++L
Sbjct: 626 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 685
Query: 724 FDHIGQKKSFTITVRLGSETTRQGLTKQYVF-GWYRWTDGLHLVRSPMAVS 773
F+ +G +KSFT+TVR G K +V W+DG+H VRSP+ ++
Sbjct: 686 FNGLGDRKSFTLTVR--------GSIKGFVVSASLVWSDGVHYVRSPITIT 728
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 297/772 (38%), Positives = 429/772 (55%), Gaps = 79/772 (10%)
Query: 20 QKQKQVYIVHFGGS-DNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSA 78
+ K YI++ G DN E+ + +TH + L S+ ++EEA+ +YSY + N F+A
Sbjct: 32 EHAKDFYIIYLGDRPDNTEETI----KTHINLLSSLNISQEEAKERKVYSYTKAFNAFAA 87
Query: 79 VLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSK 136
L+P EA ++ E EVVSV S + L TT+SW+FVGL AK++
Sbjct: 88 KLSPHEAKKMMEMEEVVSV--SRNQYRKLHTTKSWDFVGLPLTAKRHL------------ 133
Query: 137 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYY 196
+ +DVI+G++D G+ P+S+SF D G+GP P WKG C G N + CN KIIGA+Y+
Sbjct: 134 -KAERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSC--GPYKNFTGCNNKIIGAKYF 190
Query: 197 LKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 256
+ G + A E RSP D+DGHGTHT+STVAG V NAS +G A GTA G P A
Sbjct: 191 -----KHDGNVPAGEV-RSPIDIDGHGTHTSSTVAGVLVANASLYG-IANGTARGAVPSA 243
Query: 257 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIA 316
RLA+YK CWA + C + D+LA + AI DGV ++SISIG ++ D I+
Sbjct: 244 RLAMYKVCWAR--------SGCADMDILAGFEAAIHDGVEIISISIGGPIA-DYSSDSIS 294
Query: 317 IGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 376
+G+ +A++ IL SAGN GP+ +++N PW++TV A +DR F + LG G G
Sbjct: 295 VGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSG 354
Query: 377 KTVTPYNLK-KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLS 435
++ ++ K K +PLV D + C SL +KVKGK+++C G G
Sbjct: 355 MGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMGGG---- 410
Query: 436 KGME--VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 493
G+E +K GG G I+ + N + A PAT+V I+ YI ST + +A+
Sbjct: 411 -GVESTIKSYGGAGAIIVSDQYLDNAQIFMA---PATSVNSSVGDIIYRYINSTRSASAV 466
Query: 494 IKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDK 553
I++ R V T PAPF+A+F+SRGPN +LKPDI APG++ILAA++ S + L D
Sbjct: 467 IQKTRQV--TIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDT 524
Query: 554 RIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 613
+ K+TI SGTSM+CPHVA AA +K+ HPDW+ AAI+SA++T+A + + N D
Sbjct: 525 QFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRR----VNKDA 580
Query: 614 SIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN--PVFRCPNKPPSAL 671
F++G G P +AA PGLVYD Y+ +LC G++ T P+ + S++
Sbjct: 581 E----FAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSI 636
Query: 672 -------NLNYPSIAI----PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPS 720
+LNYP+I + + + +R VTNVG SVY + + P GV + P
Sbjct: 637 VPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQ 696
Query: 721 ILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 772
L F QK+SF + V+ +Q + V G W H VRSP+ +
Sbjct: 697 SLSFSKASQKRSFKVVVK-----AKQMTPGKIVSGLLVWKSPRHSVRSPIVI 743
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 134/505 (26%), Positives = 217/505 (42%), Gaps = 75/505 (14%)
Query: 174 ICQTGVAFNSSLCNKKIIGARYYLKGFEQL---YGPLNATEDDRSPR-DMDGHGTHTAST 229
I TGV +N K +Y KG++ + Y P D PR + HGTH A T
Sbjct: 187 IIDTGVEYNHPDLKKNF--GQY--KGYDFVDNDYDPKETPTGD--PRGEATDHGTHVAGT 240
Query: 230 VAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289
VA A GT G AP A L Y+ G + +++A ++
Sbjct: 241 VA-------------ANGTIKGVAPDATLLAYRVL--------GPGGSGTTENVIAGVER 279
Query: 290 AIRDGVHVLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNLAP 348
A++DG V+++S+G + N D AL+ A+ ++ S GNSGP
Sbjct: 280 AVQDGADVMNLSLGNS---LNNPDWATSTALDWAMSEGVVAVTSNGNSGPNG-------- 328
Query: 349 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQ 408
W TVG+ R+ + V T + + VT + + Y + V ++ E
Sbjct: 329 W--TVGSPGTSREAIS--VGATQLPLNEYAVTFGSYSSAKVMGYNKEDDVKALNNKEVEL 384
Query: 409 CLPG-----SLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYD 463
G + + GK+ + RGS + K K+AG +G+++ N+ + E +
Sbjct: 385 VEAGIGEAKDFEGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVP 444
Query: 464 AHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 523
+P + +D K+ +K+ T L Q +A+F+SRGP +D +
Sbjct: 445 GMSVPTIKLSLEDGEKLVSALKAGETKTTFKLTVSKALGEQ----VADFSSRGP-VMDTW 499
Query: 524 ILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 583
++KPDI+APG+NI++ + + GTSM+ PH+A A A++K P
Sbjct: 500 MIKPDISAPGVNIVSTIPTHDPDHPYGYGSK-------QGTSMASPHIAGAVAVIKQAKP 552
Query: 584 DWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKA--ADPGLVYDAS 641
WS I++A+M N A+ + ++DG + + G+G R A AD LV S
Sbjct: 553 KWSVEQIKAAIM-------NTAVTLKDSDGEVYPHNAQGAGSARIMNAIKADS-LVSPGS 604
Query: 642 YEDYLLYLCSHGFSFTNPVFRCPNK 666
Y Y +L +G N F N+
Sbjct: 605 YS-YGTFLKENGNETKNETFTIENQ 628
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 120/488 (24%), Positives = 196/488 (40%), Gaps = 90/488 (18%)
Query: 131 QDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGPVPKS----WKGICQTGVAFNS 183
Q + S +Y G+ +V ++D+G+ P K SD+ + KS + + G FNS
Sbjct: 198 QAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNS 257
Query: 184 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
+ GF Y N T D + + HG H A + A+ G
Sbjct: 258 KVP-----------YGFN--YADNNDTITDDTVDEQ--HGMHVAGIIG------ANGTGD 296
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
+ G AP A+L K + ++ T A +++AI+D+ + G VL++S+G
Sbjct: 297 DPAKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSATLVSAIEDSAKIGADVLNMSLG 351
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL--------------APW 349
++ D NA + SAGNSG + S+ + P
Sbjct: 352 SDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPG 411
Query: 350 L---ITVGAGSLDRDFVGPVVL---GTGMEIIGKTVT--------PYNLKKMHPLVYAAD 395
T A + + D + V GTG+++ +T+ ++ KK + + A+
Sbjct: 412 TSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSNDFTGSFDQKKFYVVKDASG 471
Query: 396 VVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455
+ G + T KGKI + RG K + AG GLI+ N+
Sbjct: 472 NLSKGKVADYTADA----------KGKIAIVKRGELTFADKQKYAQAAGAAGLIIVNNDG 521
Query: 456 NGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP--APFMAN 511
+ A P + K+ +++ + + + +K A T++ Q M++
Sbjct: 522 TATPVTSMALTTTFPTFGLSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTEDKMSD 581
Query: 512 FTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHV 571
FTS GP + KPDITAPG NI WS ++ YT SGTSM+ P +
Sbjct: 582 FTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG----------YTNMSGTSMASPFI 626
Query: 572 AAAAALLK 579
A + ALLK
Sbjct: 627 AGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 121/491 (24%), Positives = 191/491 (38%), Gaps = 96/491 (19%)
Query: 131 QDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGPVPKS----WKGICQTGVAFNS 183
Q + S +Y G+ +V ++D+G+ P K SD+ + KS + + G FNS
Sbjct: 198 QAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNS 257
Query: 184 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
+ GF Y N T D + + HG H A + A+ G
Sbjct: 258 KVP-----------YGFN--YADNNDTITDDTVDEQ--HGMHVAGIIG------ANGTGD 296
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
+ G AP A+L K + S G++ +++AI+D+ + G VL++S+G
Sbjct: 297 DPAKSVVGVAPEAQLLAMK-VFTNSDTSATTGSST----LVSAIEDSAKIGADVLNMSLG 351
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 363
++ D NA + SAGNSG + S+ + G D + V
Sbjct: 352 SDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYY----GLQDNEMV 407
Query: 364 GP---------VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSL 414
G V ++I + VT + + + PG Q +N GS
Sbjct: 408 GTPGTSRGATTVASAENTDVITQAVTITDGTGLQ--------LGPGTIQLSSND-FTGSF 458
Query: 415 TPEK----------------------VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452
+K KGKI + RG K + AG GLI+ N
Sbjct: 459 DQKKFYVVKDASGNLSKGALADYTADAKGKIAIVKRGELSFDDKQKYAQAAGAAGLIIVN 518
Query: 453 SPANGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP--APF 508
+ + A P + K+ +++ + + + +K A T++ Q
Sbjct: 519 NDGTATPVTSMALTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKIALTLVPNQKYTEDK 578
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
M++FTS GP + KPDITAPG NI WS ++ YT SGTSM+
Sbjct: 579 MSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG----------YTNMSGTSMAS 623
Query: 569 PHVAAAAALLK 579
P +A + ALLK
Sbjct: 624 PFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 119/488 (24%), Positives = 195/488 (39%), Gaps = 90/488 (18%)
Query: 131 QDLLSKARY-GQDVIVGLVDNGVWPESKS--FSDEGMGPVPKS----WKGICQTGVAFNS 183
Q + S +Y G+ +V ++D+G+ P K SD+ + KS + + G FNS
Sbjct: 198 QAVWSNYKYKGEGTVVSVIDSGIDPTHKDMRLSDDKDVKLTKSDVEKFTDTAKHGRYFNS 257
Query: 184 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
+ GF Y N T D + + HG H A + A+ G
Sbjct: 258 KVP-----------YGFN--YADNNDTITDDTVDEQ--HGMHVAGIIG------ANGTGD 296
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
+ G AP A+L K + ++ T A +++AI+D+ + G VL++S+G
Sbjct: 297 DPAKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSATLVSAIEDSAKIGADVLNMSLG 351
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL--------------APW 349
++ D NA + SAGNSG + S+ + +P
Sbjct: 352 SDSGNQTLEDPELAAVQNANESGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGSPG 411
Query: 350 L---ITVGAGSLDRDFVGPVVL---GTGMEIIGKTVT--------PYNLKKMHPLVYAAD 395
T A + + D + V GTG+++ +T+ ++ KK + + A+
Sbjct: 412 TSRGATTVASAENTDVITQAVTITDGTGLQLGPETIQLSSHDFTGSFDQKKFYIVKDASG 471
Query: 396 VVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455
+ G + T KGKI + RG K + AG GLI+ N+
Sbjct: 472 NLSKGALADYTADA----------KGKIAIVKRGEFSFDDKQKYAQAAGAAGLIIVNTDG 521
Query: 456 NGNEYSYDA--HYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP--APFMAN 511
+ A P + K+ +++ + + + +K +L Q M++
Sbjct: 522 TATPMTSIALTTTFPTFGLSSVTGQKLVDWVTAHPDDSLGVKITLAMLPNQKYTEDKMSD 581
Query: 512 FTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHV 571
FTS GP + KPDITAPG NI WS ++ YT SGTSM+ P +
Sbjct: 582 FTSYGP--VSNLSFKPDITAPGGNI---WSTQNNNG----------YTNMSGTSMASPFI 626
Query: 572 AAAAALLK 579
A + ALLK
Sbjct: 627 AGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q02470|P2P_LACPA PII-type proteinase OS=Lactobacillus paracasei GN=prtP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 152/393 (38%), Gaps = 74/393 (18%)
Query: 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEA 281
HG H A + A+ G + G AP A+L K + ++ T A
Sbjct: 281 HGMHVAGIIG------ANGTGDDPTKSVVGVAPEAQLLAMKVFTNSDTSA-----TTGSA 329
Query: 282 DMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS 341
+++AI+D+ + G VL++S+G++ D NA + SAGNSG + S
Sbjct: 330 TLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPEIAAVQNANESGTAAVISAGNSGTSGS 389
Query: 342 SLSNLAPWLITVGAGSLDRDFVGP---------VVLGTGMEIIGKTVTPYNLKKMHPLVY 392
+ + G D + VG V ++I + VT + K +
Sbjct: 390 ATQGVNKDYY----GLQDNEMVGTPGTSRGATTVASAENTDVISQAVTITDGKDLQ---- 441
Query: 393 AADVVVPGVHQNETNQCLPGSLTPEK----------------------VKGKIVLCMRGS 430
+ P Q +N GS +K KGKI + RG
Sbjct: 442 ----LGPETIQLSSND-FTGSFDQKKFYVVKDASGDLSKGAAADYTADAKGKIAIVKRGE 496
Query: 431 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYD--AHYLPATAVLYDDAIKIHEYIKSTN 488
K + AG GLI+ N+ + P + K+ +++ +
Sbjct: 497 LNFADKQKYAQAAGAAGLIIVNNDGTATPLTSIRLTTTFPTFGLSSKTGQKLVDWVTAHP 556
Query: 489 NPTAIIKQARTVLHTQP--APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSP 546
+ + +K A T+L Q M++FTS GP + KPDITAPG NI WS ++
Sbjct: 557 DDSLGVKIALTLLPNQKYTEDKMSDFTSYGP--VSNLSFKPDITAPGGNI---WSTQNNN 611
Query: 547 SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 579
YT SGTSM+ P +A + ALLK
Sbjct: 612 G----------YTNMSGTSMASPFIAGSQALLK 634
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactobacillus paracasei (taxid: 1597) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI-VKYTIFSGTSMS 567
+A+F+SRGP KPDI APG+NI++ S S KL R+ +Y SGTSM+
Sbjct: 329 VASFSSRGPTVYGKE--KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMSGTSMA 386
Query: 568 CPHVAAAAALLKAIHPDWSSAAIRSALM--TTAW 599
P A AAL+ +PD + ++ L T W
Sbjct: 387 TPICAGIAALILQQNPDLTPDEVKELLKNGTDKW 420
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | ||||||
| 255562582 | 776 | Xylem serine proteinase 1 precursor, put | 0.971 | 0.970 | 0.699 | 0.0 | |
| 224116492 | 775 | predicted protein [Populus trichocarpa] | 0.971 | 0.971 | 0.687 | 0.0 | |
| 225462458 | 778 | PREDICTED: subtilisin-like protease-like | 0.970 | 0.966 | 0.671 | 0.0 | |
| 359483572 | 777 | PREDICTED: subtilisin-like protease-like | 0.970 | 0.967 | 0.671 | 0.0 | |
| 297791157 | 791 | subtilase family protein [Arabidopsis ly | 0.978 | 0.958 | 0.636 | 0.0 | |
| 15242456 | 791 | subtilase family protein [Arabidopsis th | 0.978 | 0.958 | 0.638 | 0.0 | |
| 147784535 | 860 | hypothetical protein VITISV_036029 [Viti | 0.956 | 0.861 | 0.643 | 0.0 | |
| 297740588 | 740 | unnamed protein product [Vitis vinifera] | 0.921 | 0.964 | 0.634 | 0.0 | |
| 449434276 | 791 | PREDICTED: subtilisin-like protease-like | 0.972 | 0.953 | 0.586 | 0.0 | |
| 297740593 | 724 | unnamed protein product [Vitis vinifera] | 0.904 | 0.968 | 0.621 | 0.0 |
| >gi|255562582|ref|XP_002522297.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] gi|223538550|gb|EEF40155.1| Xylem serine proteinase 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/758 (69%), Positives = 620/758 (81%), Gaps = 5/758 (0%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
QK+VYIV+FG +G+KALHEI+ETH SYL SVK+ E EAR S LYSYK+SINGFSA+LT
Sbjct: 20 QKKVYIVYFG-EHSGDKALHEIEETHVSYLFSVKETEREARDSLLYSYKNSINGFSALLT 78
Query: 82 PDEAARLS--EEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK--QNWNHFNMGQDLLSKA 137
P++A++LS EEV SV SHP KYS+QTTRSWEFVGL+E + + +HF++ ++L +A
Sbjct: 79 PEQASKLSQLEEVKSVIESHPRKYSVQTTRSWEFVGLEEGEEVHHSNSHFDLERELPFRA 138
Query: 138 RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYL 197
YG+ VIVG++D+GVWPESKSFSDEGMGP+PKSWKGICQ G FNSS CNKKIIGARYY+
Sbjct: 139 GYGKRVIVGVMDSGVWPESKSFSDEGMGPIPKSWKGICQAGPGFNSSHCNKKIIGARYYI 198
Query: 198 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 257
K FEQ G LN +ED RSPRDMDGHGTHTASTVAG RV +A+A+GGFA GTASGGAPLA
Sbjct: 199 KAFEQDNGALNVSEDSRSPRDMDGHGTHTASTVAGNRVHDAAAYGGFARGTASGGAPLAH 258
Query: 258 LAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAI 317
LAIYKACWA P KA GNTC+EADMLAAIDDAI DGVHVLS+SIGT QP + +DGIAI
Sbjct: 259 LAIYKACWALPNQEKANGNTCYEADMLAAIDDAIADGVHVLSMSIGTTQPVPYEQDGIAI 318
Query: 318 GALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 377
GA +A K NI+VAC+AGN+GPAPS+LSN APW+ITVGA ++DR F+GP+VLG G I+G+
Sbjct: 319 GAFHAAKKNIVVACAAGNAGPAPSTLSNPAPWIITVGASTVDRAFLGPIVLGNGKTIMGQ 378
Query: 378 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 437
TVTP L KM+PLVYAAD+V PGV QNETNQCLP SL+P+KVKGKIVLCMRG+G ++ KG
Sbjct: 379 TVTPDKLDKMYPLVYAADMVAPGVLQNETNQCLPNSLSPDKVKGKIVLCMRGAGMRVGKG 438
Query: 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 497
MEVKRAGGVG ILGNSPANGN+ S DAH LP TAV D AI+I +YIKST NPTA I +A
Sbjct: 439 MEVKRAGGVGYILGNSPANGNDVSVDAHVLPGTAVTSDQAIEILKYIKSTENPTATIGKA 498
Query: 498 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 557
+TVLH PAP MA F+SRGPN +DP ILKPDI+APG+NILAAWS AS P+KL+ D R VK
Sbjct: 499 KTVLHYSPAPSMAAFSSRGPNVIDPNILKPDISAPGVNILAAWSGASPPTKLSTDNRTVK 558
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
+ I SGTSM+CPHVAAAAALLKAIHP WSSAAIRSA+MTTAWMKNNK PIT+ G AT
Sbjct: 559 FNIDSGTSMACPHVAAAAALLKAIHPTWSSAAIRSAIMTTAWMKNNKGQPITDPSGEPAT 618
Query: 618 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 677
PF FGSG FRP KAADPGLVYDA+Y+DY+ YLC++G +P ++CP + A NLNYPS
Sbjct: 619 PFQFGSGQFRPAKAADPGLVYDATYKDYVHYLCNYGLKDIDPKYKCPTELSPAYNLNYPS 678
Query: 678 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737
IAIP LNGTV +KR+V NVG S SVYFF+AKPPMG SVKA+PSIL F+H+ QKKSFTI +
Sbjct: 679 IAIPRLNGTVTIKRSVRNVGASNSVYFFTAKPPMGFSVKASPSILNFNHVNQKKSFTIRI 738
Query: 738 RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
E ++ +Y FGWY WTD H VRSP+AVS A
Sbjct: 739 TANPEMAKKHQKDEYAFGWYTWTDSFHYVRSPIAVSLA 776
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116492|ref|XP_002317314.1| predicted protein [Populus trichocarpa] gi|222860379|gb|EEE97926.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1057 bits (2734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/759 (68%), Positives = 606/759 (79%), Gaps = 6/759 (0%)
Query: 21 KQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVL 80
++KQVYIV+FG G+KALHEI+E H SYL VK EEEA AS LYSYKHSINGF+A+L
Sbjct: 19 EEKQVYIVYFG-EHKGDKALHEIEEFHQSYLYGVKQTEEEATASLLYSYKHSINGFAALL 77
Query: 81 TPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNH-FNMGQDLLSKA 137
PDEA++LSE EVVSV+ S+P KYS+QTTRSW F GL+E N NH F G+DLL +A
Sbjct: 78 NPDEASKLSELKEVVSVFKSNPRKYSVQTTRSWRFAGLEEEG-HNVNHGFGGGRDLLKRA 136
Query: 138 RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYL 197
YG+ VIVGL+D+GVWPES+SF DEGMGP+PKSWKGICQ G FNSS CNKKIIGARYY+
Sbjct: 137 GYGKQVIVGLLDSGVWPESQSFRDEGMGPIPKSWKGICQNGPDFNSSHCNKKIIGARYYI 196
Query: 198 KGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR 257
KGFE YGPLN TED RSPRD DGHGTHTAST G RV NA+A GGFA GTA+GGAPLA
Sbjct: 197 KGFENYYGPLNRTEDSRSPRDKDGHGTHTASTAVGSRVKNAAALGGFARGTATGGAPLAH 256
Query: 258 LAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAI 317
LAIYK CWA P KA GNTCFE DMLAAIDDAI DGVH++SISIGT +P DGIAI
Sbjct: 257 LAIYKVCWAIPNQEKADGNTCFEEDMLAAIDDAIGDGVHIMSISIGTREPTPLKEDGIAI 316
Query: 318 GALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGK 377
GA +A+K NI+VAC+AGN GPAPS+LSN +PW+ITVGA +DR F GP+VLG GM+I G+
Sbjct: 317 GAFHALKKNIVVACAAGNEGPAPSTLSNPSPWIITVGASGVDRAFFGPLVLGNGMKIEGQ 376
Query: 378 TVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 437
TVTPY L K PLV+AAD V V +N T+QCLP SL+P KVKGKIVLCMRGSG +++KG
Sbjct: 377 TVTPYKLDKDCPLVFAADAVASNVPENVTSQCLPNSLSPRKVKGKIVLCMRGSGMRVAKG 436
Query: 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 497
MEVKRAGG G ILGNS ANGN+ DAH LPAT+V Y+DA+KI YI+ST NP A I A
Sbjct: 437 MEVKRAGGFGFILGNSQANGNDVIVDAHVLPATSVGYNDAMKILNYIRSTKNPMARIGIA 496
Query: 498 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 557
RT+L +PAP MA+FTSRGPN + P ILKPDITAPG+NILAAWS A++PSKL DKR+V+
Sbjct: 497 RTILQYRPAPVMASFTSRGPNVIHPSILKPDITAPGVNILAAWSGATAPSKLYEDKRLVR 556
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
Y I SGTSM+CPHVAAAAALL+AIHP+WSSAAIRSALMTTAWMKNN PI + G+ AT
Sbjct: 557 YNIISGTSMACPHVAAAAALLRAIHPEWSSAAIRSALMTTAWMKNNMGQPIADQSGNAAT 616
Query: 618 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 677
PF FGSGHFRP KAADPGLVYDASY DYLLYLCS+G P F+CP PS N NYPS
Sbjct: 617 PFQFGSGHFRPAKAADPGLVYDASYTDYLLYLCSYGVKNVYPKFKCPAVSPSIYNFNYPS 676
Query: 678 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737
+++P LNGT+ + RTVTNVG S SVYFFSA+PP+G +VKA+PS+LFF+H+GQKKSF IT+
Sbjct: 677 VSLPKLNGTLNITRTVTNVGASSSVYFFSARPPLGFAVKASPSVLFFNHVGQKKSFIITI 736
Query: 738 RLGSETTRQGLTK-QYVFGWYRWTDGLHLVRSPMAVSFA 775
+ ++ G K +Y FGWY W++G H VRSPMAVS A
Sbjct: 737 KAREDSMSNGHNKGEYAFGWYTWSNGHHYVRSPMAVSLA 775
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462458|ref|XP_002269375.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/761 (67%), Positives = 604/761 (79%), Gaps = 9/761 (1%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+FGG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYFGG-HSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDE-VAKQNWNHFNMGQDLLSKAR 138
P EA +LSE EVVSV+PS +K++L TTRSWEFVGL++ + ++ ++LL KAR
Sbjct: 79 PQEATKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKGLGREQLKKQKKTRNLLEKAR 138
Query: 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 198
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSDCNRKLIGARYYLK 198
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G+A GTASGGAPLARL
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSAL-GYAPGTASGGAPLARL 257
Query: 259 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 318
AIYK CW P +K GNTC+E DMLAAIDDAI DGVHVLSISIGT+ PF + +DGIAIG
Sbjct: 258 AIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAIADGVHVLSISIGTSTPFTYAKDGIAIG 317
Query: 319 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 378
AL+A K+NI+VACSAGNSGP PS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 318 ALHATKNNIVVACSAGNSGPGPSTLSNPAPWIITVGASSVDRAFVTPLVLGNGMKLMGES 377
Query: 379 VTPYNL-KKMHPLVYAADVVVPGVHQNET-NQCLPGSLTPEKVKGKIVLCMRGS-GFKLS 435
VTPY L KKM+PLV+AADVVVPGV +N T C GSL P+KVKGK+VLC+RG ++
Sbjct: 378 VTPYKLKKKMYPLVFAADVVVPGVPKNNTAANCNFGSLDPKKVKGKLVLCLRGGIALRIE 437
Query: 436 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 495
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 438 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 497
Query: 496 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 555
RTVLH +PAPFMA+FTSRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 498 PGRTVLHAKPAPFMASFTSRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 557
Query: 556 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 615
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 558 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 617
Query: 616 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 675
A PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F CP PS+ NLNY
Sbjct: 618 ANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFNCPKVSPSSNNLNY 677
Query: 676 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 735
PS+ I L V + RTVTNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 678 PSLQISKLKRKVTITRTVTNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFCI 737
Query: 736 TVRLGS-ETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
TV + + +++ ++Y FGWY W DG+H VRSPMAVS A
Sbjct: 738 TVEARNPKASKKNDAEEYAFGWYTWNDGIHNVRSPMAVSLA 778
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483572|ref|XP_002269555.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1014 bits (2622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/760 (67%), Positives = 597/760 (78%), Gaps = 8/760 (1%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+F G +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYF-GEHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLD-EVAKQNWNHFNMGQDLLSKAR 138
P E +LSE EVVSV+PS +K++L TTRSWEFVGL+ E+ ++ ++LL KAR
Sbjct: 79 PHEVTKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKELGREQLKKQKKTRNLLEKAR 138
Query: 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 198
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSHCNRKLIGARYYLK 198
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G+A GTASGGAPLARL
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSAL-GYAPGTASGGAPLARL 257
Query: 259 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 318
AIYK CW P +K GNTC+E DMLAAIDDAI DGVHVLSISIGT+QPF + +DGIAIG
Sbjct: 258 AIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAIADGVHVLSISIGTSQPFTYAKDGIAIG 317
Query: 319 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 378
AL+A K+NI+VACSAGNSGPAPS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 318 ALHATKNNIVVACSAGNSGPAPSTLSNPAPWIITVGASSIDRAFVTPLVLGNGMKLMGQS 377
Query: 379 VTPYNL-KKMHPLVYAADVVVPGVHQNET-NQCLPGSLTPEKVKGKIVLCMRGS-GFKLS 435
VTPY L KKM+PLV+AAD VVPGV +N T C GSL P+KVKGKIVLC+RG ++
Sbjct: 378 VTPYKLKKKMYPLVFAADAVVPGVPKNNTAANCNFGSLDPKKVKGKIVLCLRGGMTLRIE 437
Query: 436 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 495
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 438 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 497
Query: 496 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 555
RTVLH +PAPFMA+F SRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 498 PGRTVLHAKPAPFMASFISRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 557
Query: 556 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 615
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 558 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 617
Query: 616 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 675
PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F+CP PS+ NLNY
Sbjct: 618 TNPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFKCPKVSPSSNNLNY 677
Query: 676 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 735
PS+ I L V V RT TNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 678 PSLQISKLKRKVTVTRTATNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFDI 737
Query: 736 TVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
TV + + +Y FGWY W DG+H VRSPMAVS A
Sbjct: 738 TVEARNPKASKKNDTEYAFGWYTWNDGIHNVRSPMAVSLA 777
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297791157|ref|XP_002863463.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] gi|297309298|gb|EFH39722.1| subtilase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/775 (63%), Positives = 592/775 (76%), Gaps = 17/775 (2%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KALHEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKALHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNW---------N 125
+A LTPD+A++L + EVVS++ SHP KY TTRSWEFVGL+E + +
Sbjct: 77 AAELTPDQASKLEKLAEVVSIFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 126 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 185
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 186 CNKKIIGARYYLKGFEQLYGPLNATE--DDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
CN+KIIGARYY+KG+E+ +G N TE D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYFGAFNVTETKDFLSPRDPDGHGSHTASTAVGRRVYGASALGG 256
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
FA G+ASGGAPLARLAIYKACWA P K GNTC E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAMGSASGGAPLARLAIYKACWAKPNVEKIEGNTCLEEDMLAAIDDAIADGVHVISISIG 316
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 363
T++P+ F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSN+APW+ITVGA +LDR F+
Sbjct: 317 TSEPYPFLQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNMAPWIITVGASTLDRVFI 376
Query: 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 423
G +VLG G I ++T + + K PLVYAA+VVVPG+ N+++QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTNSITAFKMDKFAPLVYAANVVVPGIALNDSSQCLPNSLKPELVTGKV 436
Query: 424 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 483
VLC+RG+G ++ KG+EVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGTRIGKGIEVKRAGGAGMILGNVAANGNEIPTDSHFVPTAGVTPTVVDKILEY 496
Query: 484 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 543
IK+ NP A IK +TV Q AP M F+SRGPN LDP ILKPDITAPGLNILAAWS A
Sbjct: 497 IKTDKNPMAFIKPGKTVYKYQAAPSMTGFSSRGPNVLDPNILKPDITAPGLNILAAWSGA 556
Query: 544 SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 603
SPSK++ D+R+ Y I+SGTSMSCPHVA A ALLKAIHP WSSAAIRSALMT+AWM N+
Sbjct: 557 DSPSKMSVDQRVADYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTSAWMTND 616
Query: 604 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 663
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 664 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV--GGSKSVYFFSAKPPMGVSVKANPSI 721
P+K P N NYPSIA+PNLN TV VKRTVTNV G S S Y FSAKPP GVSVKA P++
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLNKTVTVKRTVTNVGNGNSTSTYLFSAKPPSGVSVKAIPNV 736
Query: 722 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
LFF+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LFFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15242456|ref|NP_199378.1| subtilase family protein [Arabidopsis thaliana] gi|9758669|dbj|BAB09208.1| subtilisin-like protease [Arabidopsis thaliana] gi|26451161|dbj|BAC42684.1| putative subtilisin-like protease [Arabidopsis thaliana] gi|28973549|gb|AAO64099.1| putative subtilisin [Arabidopsis thaliana] gi|332007897|gb|AED95280.1| subtilase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/775 (63%), Positives = 588/775 (75%), Gaps = 17/775 (2%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KA HEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKAFHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNW---------N 125
+A LTPD+A++L + EVVSV+ SHP KY TTRSWEFVGL+E + +
Sbjct: 77 AAELTPDQASKLEKLAEVVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 126 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 185
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 186 CNKKIIGARYYLKGFEQLYGPLNAT--EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
CN+KIIGARYY+KG+E+ YG NAT +D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGG 256
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
FA+G+ASGGAPLARLAIYKACWA P A K GN C E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG 316
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 363
T +PF F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSNLAPW+ITVGA +LDR FV
Sbjct: 317 TTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFV 376
Query: 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 423
G +VLG G I ++T + + K PLVYA++VVVPG+ NET+QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTDSITAFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKV 436
Query: 424 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 483
VLC+RG+G ++ KGMEVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGSRIGKGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEY 496
Query: 484 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 543
IK+ NP A IK +TV Q AP M F+SRGPN +DP ILKPDITAPGL ILAAWS A
Sbjct: 497 IKTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGA 556
Query: 544 SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 603
SPSK++ D+R+ Y I+SGTSMSCPHVA A ALLKAIHP WSSAAIRSALMTTAWM N+
Sbjct: 557 DSPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTND 616
Query: 604 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 663
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 664 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV--GGSKSVYFFSAKPPMGVSVKANPSI 721
P+K P N NYPSIA+PNL TV VKRTVTNV G S S Y FS KPP G+SVKA P+I
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNI 736
Query: 722 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
L F+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784535|emb|CAN61728.1| hypothetical protein VITISV_036029 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 982 bits (2539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/776 (64%), Positives = 587/776 (75%), Gaps = 35/776 (4%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+F G +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYF-GEHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLS-----------------------------EEVVSVYPSHPEKYSLQTTRSWE 112
P E +LS +EVVSV+PS +K++L TTRSWE
Sbjct: 79 PHEVTKLSGKTKRSNGSAFIFSLMANKSNSFSFPTEMDEVVSVFPSQRKKHTLHTTRSWE 138
Query: 113 FVGLD-EVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSW 171
FVGL+ E+ ++ ++LL KARYG +IVG+VDNGVWPESKSFSDEGMGP+PKSW
Sbjct: 139 FVGLEKELGREQLKKQKKTRNLLEKARYGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSW 198
Query: 172 KGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVA 231
KGICQTGVAFNSS CN+K+IGARYYLKG+E GPLN T D RSPRD DGHGTHTASTVA
Sbjct: 199 KGICQTGVAFNSSHCNRKLIGARYYLKGYESDNGPLNTTTDYRSPRDKDGHGTHTASTVA 258
Query: 232 GRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291
GRRV N SA G+A GTASGGAPLARLAIYK CW P +K GNTC+E DMLAAIDDAI
Sbjct: 259 GRRVHNVSAL-GYAPGTASGGAPLARLAIYKVCWPIPGQTKVKGNTCYEEDMLAAIDDAI 317
Query: 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLI 351
DGVHVLSISIGT+QPF + +DGIAIGAL+A K+NI+VACSAGNSGPAPS+LSN APW+I
Sbjct: 318 ADGVHVLSISIGTSQPFTYAKDGIAIGALHATKNNIVVACSAGNSGPAPSTLSNPAPWII 377
Query: 352 TVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNL-KKMHPLVYAADVVVPGVHQNET-NQC 409
TVGA S+DR FV P+VLG GM+++G++VTPY L KKM+PLV+AAD VVPGV +N T C
Sbjct: 378 TVGASSIDRAFVTPLVLGNGMKLMGQSVTPYKLKKKMYPLVFAADAVVPGVPKNNTAANC 437
Query: 410 LPGSLTPEKVKGKIVLCMRGS-GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLP 468
GSL P+KVKGKIVLC+RG ++ KG+EVKRAGGVG ILGN+P NG + D H LP
Sbjct: 438 NFGSLDPKKVKGKIVLCLRGGMTLRIEKGIEVKRAGGVGFILGNTPENGFDLPADPHLLP 497
Query: 469 ATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528
ATAV +D KI YIKST P A I TVLH +PAPFMA+F SRGPN +DP ILKPD
Sbjct: 498 ATAVSSEDVTKIRNYIKSTKKPMATIIPGXTVLHAKPAPFMASFXSRGPNTIDPNILKPD 557
Query: 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 588
IT PGLNILAAWSE SSP++ D R+VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSA
Sbjct: 558 ITGPGLNILAAWSEGSSPTRSELDPRVVKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSA 617
Query: 589 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLY 648
AIRSALMTTA + NN PIT++ G+ A PF +GSGHFRPTKAADPGLVYD +Y DYLLY
Sbjct: 618 AIRSALMTTAGLVNNIGKPITDSSGNPANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLY 677
Query: 649 LCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAK 708
C+ G + F+CP PS+ NLNYPS+ I L V V RT TNVG ++S+YF S K
Sbjct: 678 HCNIGVKSLDSSFKCPKVSPSSNNLNYPSLQISKLKRKVTVTRTATNVGSARSIYFSSVK 737
Query: 709 PPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 764
P+G SV+ PSIL+F+H+GQKKSF ITV + + +Y FGWY W DG+H
Sbjct: 738 SPVGFSVRVEPSILYFNHVGQKKSFDITVEARNPKASKKNDTEYAFGWYTWNDGIH 793
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740588|emb|CBI30770.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/761 (63%), Positives = 575/761 (75%), Gaps = 47/761 (6%)
Query: 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
+++VYIV+FGG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+
Sbjct: 20 ERKVYIVYFGG-HSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLS 78
Query: 82 PDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDE-VAKQNWNHFNMGQDLLSKAR 138
P EA +LSE EVVSV+PS +K++L TTRSWEFVGL++ + ++ ++LL KAR
Sbjct: 79 PQEATKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKGLGREQLKKQKKTRNLLEKAR 138
Query: 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 198
YG +IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLK
Sbjct: 139 YGDQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSDCNRKLIGARYYLK 198
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
G+E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLA
Sbjct: 199 GYESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLA-- 255
Query: 259 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIG 318
+HVLSISIGT+ PF + +DGIAIG
Sbjct: 256 ------------------------------------LHVLSISIGTSTPFTYAKDGIAIG 279
Query: 319 ALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKT 378
AL+A K+NI+VACSAGNSGP PS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++
Sbjct: 280 ALHATKNNIVVACSAGNSGPGPSTLSNPAPWIITVGASSVDRAFVTPLVLGNGMKLMGES 339
Query: 379 VTPYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLS 435
VTPY LKK M+PLV+AADVVVPGV +N T C GSL P+KVKGK+VLC+RG ++
Sbjct: 340 VTPYKLKKKMYPLVFAADVVVPGVPKNNTAANCNFGSLDPKKVKGKLVLCLRGGIALRIE 399
Query: 436 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 495
KG+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 400 KGIEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATII 459
Query: 496 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 555
RTVLH +PAPFMA+FTSRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+
Sbjct: 460 PGRTVLHAKPAPFMASFTSRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRV 519
Query: 556 VKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 615
VKY IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 520 VKYNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNP 579
Query: 616 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNY 675
A PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F CP PS+ NLNY
Sbjct: 580 ANPFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFNCPKVSPSSNNLNY 639
Query: 676 PSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTI 735
PS+ I L V + RTVTNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF I
Sbjct: 640 PSLQISKLKRKVTITRTVTNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFCI 699
Query: 736 TVRLGS-ETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
TV + + +++ ++Y FGWY W DG+H VRSPMAVS A
Sbjct: 700 TVEARNPKASKKNDAEEYAFGWYTWNDGIHNVRSPMAVSLA 740
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434276|ref|XP_004134922.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] gi|449525046|ref|XP_004169531.1| PREDICTED: subtilisin-like protease-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/777 (58%), Positives = 584/777 (75%), Gaps = 23/777 (2%)
Query: 10 FLLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSY 69
+ ASS+ QK+ YIV+FG +GEK++ EI+E HHSYL+ VK++EE+A++ LY+Y
Sbjct: 23 LFIQQAASSSNNQKKAYIVYFG-EHHGEKSIEEIKERHHSYLMYVKESEEDAKSCLLYNY 81
Query: 70 KHSINGFSAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHF 127
KHSIN F+A+LTP +A++LS+ EVVSV S +KY ++TTRSWEF G++E K N
Sbjct: 82 KHSINAFAAILTPQQASKLSDLDEVVSVIES--KKYRMETTRSWEFSGVEE-DKPTIN-- 136
Query: 128 NMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCN 187
DL+S+A YG+DV++G++D+GVWP+SKSFSD+GMGP+PKSWKGICQTG AF S+ CN
Sbjct: 137 ----DLVSRANYGKDVVIGMLDSGVWPKSKSFSDKGMGPIPKSWKGICQTGPAFQSAHCN 192
Query: 188 KKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEG 247
+KIIGARYYLKG+E +G LN T D RSP D DGHG+HTAS GRRV N SAFGG A G
Sbjct: 193 RKIIGARYYLKGYEHHFGRLNKTADYRSPCDKDGHGSHTASIAGGRRVYNVSAFGGVAWG 252
Query: 248 TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQP 307
TASGGAP ARLAIYK CWA P KA GN CF+ DMLAA+DDAI DGV VLS+SIG ++P
Sbjct: 253 TASGGAPWARLAIYKVCWAIPNQMKALGNVCFDTDMLAAMDDAIADGVDVLSLSIGKSEP 312
Query: 308 FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVV 367
+ + DG+AIGAL+AVK +I+V+CSAGN GP PS+LSN+APW+ITVGA ++DR+F PV+
Sbjct: 313 YNYTDDGMAIGALHAVKKDIVVSCSAGNYGPTPSALSNVAPWIITVGASTVDREFYSPVI 372
Query: 368 LGTGMEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 425
LG G++I G +V P L KKM+PLVYA D++ P +N++ C+ GSL+ EK KGKIVL
Sbjct: 373 LGNGLKIKGLSVAPSKLERKKMYPLVYAGDIMNPHAPRNQSGLCVAGSLSHEKAKGKIVL 432
Query: 426 CMRGSGF-KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 484
C RG G + + +EV+R+GG G+ILGN PA G D H++PATAV Y+DA I +YI
Sbjct: 433 CFRGEGISRFAGSLEVQRSGGAGMILGNVPAVGRRPHADPHFVPATAVSYEDANIILKYI 492
Query: 485 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 544
KS NPTA I T+ ++PAP MANF+SRGPN +DP+ LKPDITAPG++ILAAWSE
Sbjct: 493 KSRKNPTATIVPPVTIYGSRPAPAMANFSSRGPNPIDPHFLKPDITAPGVDILAAWSEQD 552
Query: 545 SPSKLA--FDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKN 602
SP+KL D RIV+Y ++SGTSMSCPHV+AAAALL+AIHP WS AAIRSALMTT+ N
Sbjct: 553 SPTKLPKYLDPRIVQYNLYSGTSMSCPHVSAAAALLRAIHPTWSQAAIRSALMTTSTTNN 612
Query: 603 NKALPITN---ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNP 659
PIT+ D S ATPFSFGSGHFRP+KAADPGLVYD++Y DYL YLC + +P
Sbjct: 613 KYGQPITDDSTLDNSPATPFSFGSGHFRPSKAADPGLVYDSNYTDYLHYLCGLKMNSIDP 672
Query: 660 VFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNV-GGSKSVYFFSAKPPMGVSVKAN 718
F+CP + +LNYPSIA+P L V +KRTVTNV GG K+VYFF ++ P GV+V A+
Sbjct: 673 SFKCPPRALHPHDLNYPSIAVPQLRNVVRIKRTVTNVGGGGKNVYFFKSEAPRGVAVSAS 732
Query: 719 PSILFFDHIGQKKSFTITV--RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVS 773
P+IL+F+ +G++K FTIT+ ++ + + Y FGW+ W+DG+H VRSP+AVS
Sbjct: 733 PNILYFNRVGERKKFTITISRKVNNNNRSSKKGEDYSFGWFAWSDGIHYVRSPIAVS 789
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740593|emb|CBI30775.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/758 (62%), Positives = 550/758 (72%), Gaps = 57/758 (7%)
Query: 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPD 83
QVYIV+FG +G+KALHEI++ HHSYLLSVK +EEEAR S LYSYKHSINGF+AVL+P
Sbjct: 18 QVYIVYFG-EHSGQKALHEIEDYHHSYLLSVKASEEEARDSLLYSYKHSINGFAAVLSPH 76
Query: 84 EAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLD-EVAKQNWNHFNMGQDLLSKARYG 140
E +LSE EVVSV+PS +K++L TTRSWEFVGL+ E+ ++ ++LL KARYG
Sbjct: 77 EVTKLSEMDEVVSVFPSQRKKHTLHTTRSWEFVGLEKELGREQLKKQKKTRNLLEKARYG 136
Query: 141 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGF 200
+IVG+VDNGVWPESKSFSDEGMGP+PKSWKGICQTGVAFNSS CN+K+IGARYYLKG+
Sbjct: 137 DQIIVGMVDNGVWPESKSFSDEGMGPIPKSWKGICQTGVAFNSSHCNRKLIGARYYLKGY 196
Query: 201 EQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAI 260
E GPLN T D RSPRD DGHGTHTASTVAGRRV N SA G +A GTASGGAPLARLAI
Sbjct: 197 ESDNGPLNTTTDYRSPRDKDGHGTHTASTVAGRRVHNVSALG-YAPGTASGGAPLARLAI 255
Query: 261 YKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL 320
YK CW P +K GNTC+E D+
Sbjct: 256 YKVCWPIPGQTKVKGNTCYEEDI------------------------------------- 278
Query: 321 NAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380
AGNSGPAPS+LSN APW+ITVGA S+DR FV P+VLG GM+++G++VT
Sbjct: 279 ------------AGNSGPAPSTLSNPAPWIITVGASSIDRAFVTPLVLGNGMKLMGQSVT 326
Query: 381 PYNLKK-MHPLVYAADVVVPGVHQNETN-QCLPGSLTPEKVKGKIVLCMRGS-GFKLSKG 437
PY LKK M+PLV+AAD VVPGV +N T C GSL P+KVKGKIVLC+RG ++ KG
Sbjct: 327 PYKLKKKMYPLVFAADAVVPGVPKNNTAANCNFGSLDPKKVKGKIVLCLRGGMTLRIEKG 386
Query: 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQA 497
+EVKRAGGVG ILGN+P NG + D H LPATAV +D KI YIKST P A I
Sbjct: 387 IEVKRAGGVGFILGNTPENGFDLPADPHLLPATAVSSEDVTKIRNYIKSTKKPMATIIPG 446
Query: 498 RTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVK 557
RTVLH +PAPFMA+F SRGPN +DP ILKPDIT PGLNILAAWSE SSP++ D R+VK
Sbjct: 447 RTVLHAKPAPFMASFISRGPNTIDPNILKPDITGPGLNILAAWSEGSSPTRSELDPRVVK 506
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
Y IFSGTSMSCPHVAAA ALLKAIHP+WSSAAIRSALMTTA + NN PIT++ G+
Sbjct: 507 YNIFSGTSMSCPHVAAAVALLKAIHPNWSSAAIRSALMTTAGLVNNIGKPITDSSGNPTN 566
Query: 618 PFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPS 677
PF +GSGHFRPTKAADPGLVYD +Y DYLLYLC+ G + F+CP PS+ NLNYPS
Sbjct: 567 PFQYGSGHFRPTKAADPGLVYDTTYTDYLLYLCNIGVKSLDSSFKCPKVSPSSNNLNYPS 626
Query: 678 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737
+ I L V V RT TNVG ++S+YF S K P+G SV+ PSIL+F+H+GQKKSF ITV
Sbjct: 627 LQISKLKRKVTVTRTATNVGSARSIYFSSVKSPVGFSVRVEPSILYFNHVGQKKSFDITV 686
Query: 738 RLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
+ + +Y FGWY W DG+H VRSPMAVS A
Sbjct: 687 EARNPKASKKNDTEYAFGWYTWNDGIHNVRSPMAVSLA 724
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 775 | ||||||
| TAIR|locus:2171938 | 791 | AT5G45650 "AT5G45650" [Arabido | 0.978 | 0.958 | 0.630 | 2.1e-260 | |
| TAIR|locus:2172018 | 754 | AT5G45640 "AT5G45640" [Arabido | 0.890 | 0.915 | 0.563 | 3.8e-204 | |
| UNIPROTKB|Q6H733 | 799 | P0026H03.20-1 "Putative subtil | 0.945 | 0.917 | 0.452 | 2.6e-166 | |
| TAIR|locus:2050215 | 772 | AIR3 "AT2G04160" [Arabidopsis | 0.940 | 0.944 | 0.444 | 1.1e-165 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.801 | 0.820 | 0.477 | 2.2e-153 | |
| TAIR|locus:2168057 | 778 | SBT5.4 "AT5G59810" [Arabidopsi | 0.858 | 0.854 | 0.449 | 1.1e-149 | |
| UNIPROTKB|Q0J050 | 769 | Os09g0530800 "Os09g0530800 pro | 0.930 | 0.937 | 0.426 | 3.4e-148 | |
| UNIPROTKB|Q8H4X8 | 762 | OJ1136_A10.113 "Putative subti | 0.930 | 0.946 | 0.414 | 3.1e-147 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.689 | 0.698 | 0.480 | 4.2e-145 | |
| TAIR|locus:2091010 | 775 | AT3G14240 "AT3G14240" [Arabido | 0.938 | 0.938 | 0.414 | 2.3e-142 |
| TAIR|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2506 (887.2 bits), Expect = 2.1e-260, P = 2.1e-260
Identities = 489/775 (63%), Positives = 583/775 (75%)
Query: 17 SSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGF 76
+S ++KQVYIV+FG G+KA HEI+E HHSYL SVK++EE+ARAS LYSYKHSINGF
Sbjct: 18 ASCAEEKQVYIVYFG-EHKGDKAFHEIEEHHHSYLQSVKESEEDARASLLYSYKHSINGF 76
Query: 77 SAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVA-------KQNW--N 125
+A LTPD+A++L + EVVSV+ SHP KY TTRSWEFVGL+E ++N +
Sbjct: 77 AAELTPDQASKLEKLAEVVSVFKSHPRKYEAHTTRSWEFVGLEEEETDSDVPRRKNDADD 136
Query: 126 HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSL 185
F +G++ L KA++G +IVG++D+GVWPESKSF+D+GMGPVPKSWKGICQTGVAFNSS
Sbjct: 137 RFRVGRNFLKKAKHGDGIIVGVLDSGVWPESKSFNDKGMGPVPKSWKGICQTGVAFNSSH 196
Query: 186 CNKKIIGARYYLKGFEQLYGPLNAT--EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
CN+KIIGARYY+KG+E+ YG NAT +D SPRD DGHG+HTAST GRRV ASA GG
Sbjct: 197 CNRKIIGARYYVKGYERYYGAFNATANKDFLSPRDPDGHGSHTASTAVGRRVLGASALGG 256
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
FA+G+ASGGAPLARLAIYKACWA P A K GN C E DMLAAIDDAI DGVHV+SISIG
Sbjct: 257 FAKGSASGGAPLARLAIYKACWAKPNAEKVEGNICLEEDMLAAIDDAIADGVHVISISIG 316
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 363
T +PF F +DGIA+GAL+AVK NI+VA SAGNSGP P +LSNLAPW+ITVGA +LDR FV
Sbjct: 317 TTEPFPFTQDGIAMGALHAVKRNIVVAASAGNSGPKPGTLSNLAPWIITVGASTLDRAFV 376
Query: 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 423
G +VLG G I ++T + + K PLVYA++VVVPG+ NET+QCLP SL PE V GK+
Sbjct: 377 GGLVLGNGYTIKTDSITAFKMDKFAPLVYASNVVVPGIALNETSQCLPNSLKPELVSGKV 436
Query: 424 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 483
VLC+RG+G ++ KGMEVKRAGG G+ILGN ANGNE D+H++P V KI EY
Sbjct: 437 VLCLRGAGSRIGKGMEVKRAGGAGMILGNIAANGNEVPSDSHFVPTAGVTPTVVDKILEY 496
Query: 484 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEA 543
IK+ NP A IK +TV Q AP M F+SRGPN +DP ILKPDITAPGL ILAAWS A
Sbjct: 497 IKTDKNPKAFIKPGKTVYKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGA 556
Query: 544 SSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNN 603
SPSK++ D+R+ Y I+SGTSMSCPHV IHP WSSAAIRSALMTTAWM N+
Sbjct: 557 DSPSKMSVDQRVAGYNIYSGTSMSCPHVAGAIALLKAIHPKWSSAAIRSALMTTAWMTND 616
Query: 604 KALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRC 663
K PI + G A PF+ GSGHFRPTKAADPGLVYDASY YLLY CS + +P F+C
Sbjct: 617 KKKPIQDTTGLPANPFALGSGHFRPTKAADPGLVYDASYRAYLLYGCSVNITNIDPTFKC 676
Query: 664 PNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVG--GSKSVYFFSAKPPMGVSVKANPSI 721
P+K P N NYPSIA+PNL TV VKRTVTNVG S S Y FS KPP G+SVKA P+I
Sbjct: 677 PSKIPPGYNHNYPSIAVPNLKKTVTVKRTVTNVGTGNSTSTYLFSVKPPSGISVKAIPNI 736
Query: 722 LFFDHIGQKKSFTITVR-LGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
L F+ IGQK+ F I ++ L ++ QY FGW+ WTD +H+VRSP+AVS A
Sbjct: 737 LSFNRIGQKQRFKIVIKPLKNQVMNATEKGQYQFGWFSWTDKVHVVRSPIAVSLA 791
|
|
| TAIR|locus:2172018 AT5G45640 "AT5G45640" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
Identities = 410/728 (56%), Positives = 503/728 (69%)
Query: 72 SINGFSAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWN---- 125
SINGF+A LTPD+A+RL E EVVSV+ S P KY + TTRSWEFVGL E +++
Sbjct: 37 SINGFAAELTPDQASRLKELKEVVSVFKSDPRKYKIHTTRSWEFVGLKEEEGEDYRSDGD 96
Query: 126 ---H-------FNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGIC 175
H F +G+ L A++G VIVGL+D+GVWPES+SF D+GMGP+P+SWKGIC
Sbjct: 97 APRHKYDVNDRFRVGRKFLKNAKHGDGVIVGLIDSGVWPESRSFDDKGMGPIPESWKGIC 156
Query: 176 QTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA--TEDDRSPRDMDGHGTHTASTVAGR 233
QTGVAFNSS CN RYY +G+E+ YGP NA +D SPRD DGHG+HTAST GR
Sbjct: 157 QTGVAFNSSHCN------RYYARGYERYYGPFNAEANKDFLSPRDADGHGSHTASTAVGR 210
Query: 234 RVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 293
RV SA GG A GTASGGA LARLA+YKACWA P K A NTCF+ DMLAA DDAI D
Sbjct: 211 RVDGVSALGGIAMGTASGGASLARLAVYKACWAVPNKEKYATNTCFDEDMLAAFDDAIAD 270
Query: 294 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITV 353
GV+V+SISIGT +P + DGIAIGAL+AVK +I+VA SAGN GPA +LSN APW+ITV
Sbjct: 271 GVNVISISIGTVEPHTYLEDGIAIGALHAVKRDIVVAASAGNDGPARETLSNPAPWIITV 330
Query: 354 GAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGS 413
GA SLDR FVG + LG G ++T + PLVYA DVVVPGV +N+ CLP +
Sbjct: 331 GASSLDRFFVGRLELGDGYVFESDSLTTLKMDNYAPLVYAPDVVVPGVSRNDAMLCLPNA 390
Query: 414 LTPEKVKGKIVLCMRG--SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATA 471
L+P+ V+GK+VLC+RG SG + KG+EVKRAGGVG+IL NS N + + ++H++P TA
Sbjct: 391 LSPDHVRGKVVLCLRGYGSGSTIGKGLEVKRAGGVGMILANSRDN-DAFDVESHFVP-TA 448
Query: 472 VLYDDAI-KIHEYIKSTNNPTAIIKQARTVLH-TQPAPFMANFTSRGPNALDPYILKPDI 529
+++ + +I +YI +T P A IK A TVL+ QP + + P + ++ PDI
Sbjct: 449 LVFSSTVDRILDYIYNTYEPVAFIKPAETVLYRNQPEDSVYPYKP-AP-FMTSFL--PDI 504
Query: 530 TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAA 589
APGLNILAAWS A S SK + D+R++ Y + SGTSMSCPHV +HP WSSAA
Sbjct: 505 IAPGLNILAAWSGADSASKDSIDRRVLDYNLDSGTSMSCPHVAGAIALLKSMHPTWSSAA 564
Query: 590 IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYL 649
IRSALMTTA M N PI + DGS A PF+ GS HFRPTKAA PGLVYDASY+ YLLY
Sbjct: 565 IRSALMTTASMTNEDNEPIQDYDGSPANPFALGSRHFRPTKAASPGLVYDASYQSYLLYC 624
Query: 650 CSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVG---GSKSVYFFS 706
CS G + +P F+CP++ P NLNYPSI+IP L+GTV V RTVT VG S SVY F+
Sbjct: 625 CSVGLTNLDPTFKCPSRIPPGYNLNYPSISIPYLSGTVTVTRTVTCVGRTGNSTSVYVFN 684
Query: 707 AKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS-ETTRQGLTKQYVFGWYRWTDGLHL 765
A+PP GV VKA P++L FD IGQKK F I E T + +Y FGW+ WTDG H+
Sbjct: 685 AQPPNGVLVKAEPNVLVFDKIGQKKRFNIIFTTQRYEFTGEARRDRYRFGWFSWTDGHHV 744
Query: 766 VRSPMAVS 773
VRS +AVS
Sbjct: 745 VRSSIAVS 752
|
|
| UNIPROTKB|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1618 (574.6 bits), Expect = 2.6e-166, P = 2.6e-166
Identities = 356/786 (45%), Positives = 475/786 (60%)
Query: 16 ASSAQKQKQVYIVHFGGSDNGEK------------AL-HEIQETHHSYLLSVKDNEEEAR 62
A++ +KQ Y+V+ G +GE+ AL + +++H L V ++E+AR
Sbjct: 30 AAAGGGEKQSYVVYLGEHAHGERLGAAAAADVDVEALARQAEDSHCELLAGVLGDKEKAR 89
Query: 63 ASHLYSYKHSINGFSAVLTPDEAARLSEE--VVSVYPSHPEKYSLQTTRSWEFVGLDEVA 120
+ YSY INGF+A L AA+++E+ VVSV+P+ K L TTRSW+F+GL V
Sbjct: 90 EAIFYSYTRHINGFAANLDAAAAAKIAEKPGVVSVFPNRGHK--LHTTRSWQFLGLAGVG 147
Query: 121 KQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVA 180
G KAR+G+D I+G +D GVWPES+SF D+G+GP+P W+G CQ G
Sbjct: 148 GAP-----TGA-AWKKARFGEDTIIGNLDTGVWPESESFRDDGLGPIPSWWRGECQKGQD 201
Query: 181 FNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASA 240
++ CN+K+IGAR++ KG+ G LN + D +PRD DGHGTHT ST G V AS
Sbjct: 202 -DAFSCNRKLIGARFFNKGYASAVGNLNTSLFD-TPRDTDGHGTHTLSTAGGAPVAGASV 259
Query: 241 FGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSI 300
FG + GTASGG+P+AR+A Y+ C+ TP G+ CF+AD+LAA D AI DGVHVLS+
Sbjct: 260 FG-YGNGTASGGSPMARVAAYRVCY-TP----VNGSECFDADILAAFDAAIHDGVHVLSV 313
Query: 301 SIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDR 360
S+G + F DG+AIG+ +AV+H I V CSAGNSGPAP ++SN+APWL T A ++DR
Sbjct: 314 SLGGDAGDYF-ADGLAIGSFHAVRHGIAVVCSAGNSGPAPGTVSNVAPWLFTAAASTMDR 372
Query: 361 DFVGPVVLGT----GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTP 416
+F VV G + ++P + P++ ++ P QNE+ C GSL P
Sbjct: 373 EFPAYVVFNDTKLKGQSLSASALSPAS--SSFPMIDSSLAASPNRTQNESQLCFLGSLDP 430
Query: 417 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDD 476
EKVKGKIV+C+RG ++ KG V AGG G++L N GNE DAH LPAT + + D
Sbjct: 431 EKVKGKIVVCLRGVNPRVEKGEAVLEAGGAGMVLANDVTTGNEIIADAHVLPATHIKFSD 490
Query: 477 AIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 536
+ Y+K+T +P I + T L T+PAPFMA F+S+GPN + P ILKPDITAPG+++
Sbjct: 491 GQILFSYLKNTKSPAGTITRPETRLGTKPAPFMAAFSSQGPNTVTPGILKPDITAPGVSV 550
Query: 537 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMT 596
+AAW+ AS+P+ LAFDKR V + SGTSMSCPHV + PDWS AAIRSALMT
Sbjct: 551 VAAWTRASAPTDLAFDKRRVAFNSESGTSMSCPHVAGVVGLLRTLRPDWSPAAIRSALMT 610
Query: 597 TAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSF 656
TA +N+ I N+ + A PF FG+GH P +A +PGLVYD + DYL +LCS ++
Sbjct: 611 TAVEVDNERHAILNSSFAAANPFGFGAGHVSPARAMNPGLVYDLAAVDYLNFLCSLSYNA 670
Query: 657 TNPV----------FRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFS 706
T FRCP PP +LNYPSI + NL + V+RTV NVG VY
Sbjct: 671 TVMAMFAGGGGAAPFRCPASPPKVQDLNYPSITVVNLTSSATVRRTVKNVG-KPGVYKAY 729
Query: 707 AKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLV 766
P GV V +P L F G+KK+F VR E T L Y FG WT+G V
Sbjct: 730 VTSPAGVRVTVSPDTLPFLLKGEKKTFQ--VRF--EVTNASLAMDYSFGALVWTNGKQFV 785
Query: 767 RSPMAV 772
RSP+ V
Sbjct: 786 RSPLVV 791
|
|
| TAIR|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1612 (572.5 bits), Expect = 1.1e-165, P = 1.1e-165
Identities = 343/771 (44%), Positives = 469/771 (60%)
Query: 19 AQKQKQVYIVHFGGSDN-GE---KALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSIN 74
A K Y+V+FG + GE A+ ++ETH+ +L S + E A + YSY IN
Sbjct: 25 ASKDSSSYVVYFGAHSHVGEITEDAMDRVKETHYDFLGSFTGSRERATDAIFYSYTKHIN 84
Query: 75 GFSAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQD 132
GF+A L D A +S+ EVVSV+P+ K L TTRSW+F+GL+ N +
Sbjct: 85 GFAAHLDHDLAYEISKHPEVVSVFPNKALK--LHTTRSWDFLGLEH------NSYVPSSS 136
Query: 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQT--GVAFNSSLCNKKI 190
+ KAR+G+D I+ +D GVWPESKSF DEG+GP+P WKGICQ F+ CN+K+
Sbjct: 137 IWRKARFGEDTIIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATFH---CNRKL 193
Query: 191 IGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTAS 250
IGARY+ KG+ G LN++ D SPRD+DGHG+HT ST AG VP S FG GTA
Sbjct: 194 IGARYFNKGYAAAVGHLNSSFD--SPRDLDGHGSHTLSTAAGDFVPGVSIFGQ-GNGTAK 250
Query: 251 GGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAF 310
GG+P AR+A YK CW K GN C++AD+LAA D AI DG V+S+S+G +P +F
Sbjct: 251 GGSPRARVAAYKVCWPPVK-----GNECYDADVLAAFDAAIHDGADVISVSLG-GEPTSF 304
Query: 311 NRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGT 370
D +AIG+ +A K I+V CSAGNSGPA S++SN+APW ITVGA ++DR+F +VLG
Sbjct: 305 FNDSVAIGSFHAAKKRIVVVCSAGNSGPADSTVSNVAPWQITVGASTMDREFASNLVLGN 364
Query: 371 GMEIIGKTVTPYNLK--KMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 428
G G++++ L K +P++ + + + C GSL P K KGKI++C+R
Sbjct: 365 GKHYKGQSLSSTALPHAKFYPIMASVNAKAKNASALDAQLCKLGSLDPIKTKGKILVCLR 424
Query: 429 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTN 488
G ++ KG V GG+G++L N+ GN+ D H LPAT + D+ + YI T
Sbjct: 425 GQNGRVEKGRAVALGGGIGMVLENTYVTGNDLLADPHVLPATQLTSKDSFAVSRYISQTK 484
Query: 489 NPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSK 548
P A I +RT L +PAP MA+F+S+GP+ + P ILKPDITAPG++++AA++ A SP+
Sbjct: 485 KPIAHITPSRTDLGLKPAPVMASFSSKGPSIVAPQILKPDITAPGVSVIAAYTGAVSPTN 544
Query: 549 LAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPI 608
FD R + + SGTSMSCPH+ +P WS AAIRSA+MTTA + ++ PI
Sbjct: 545 EQFDPRRLLFNAISGTSMSCPHISGIAGLLKTRYPSWSPAAIRSAIMTTATIMDDIPGPI 604
Query: 609 TNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFS------FTNPVFR 662
NA ATPFSFG+GH +P A +PGLVYD +DYL +LCS G++ F+ F
Sbjct: 605 QNATNMKATPFSFGAGHVQPNLAVNPGLVYDLGIKDYLNFLCSLGYNASQISVFSGNNFT 664
Query: 663 CPNKPPSALNLNYPSIAIPNLNGT-VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSI 721
C + S +NLNYPSI +PNL + V V RTV NVG S+Y P GV V P+
Sbjct: 665 CSSPKISLVNLNYPSITVPNLTSSKVTVSRTVKNVG-RPSMYTVKVNNPQGVYVAVKPTS 723
Query: 722 LFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 772
L F +G++K+F + + ++ + K YVFG W+D H VRSP+ V
Sbjct: 724 LNFTKVGEQKTFKVIL----VKSKGNVAKGYVFGELVWSDKKHRVRSPIVV 770
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
Identities = 314/657 (47%), Positives = 417/657 (63%)
Query: 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKII 191
DL +A DV+VG++D GVWPESKS+SDEG GP+P SWKG C+ G F +SLCN+K+I
Sbjct: 122 DLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLI 181
Query: 192 GARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASG 251
GAR++ +G+E GP++ +++ RSPRD DGHGTHT+ST AG V AS G +A GTA G
Sbjct: 182 GARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLG-YASGTARG 240
Query: 252 GAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFN 311
AP AR+A+YK CW G CF +D+LAAID AI D V+VLS+S+G +
Sbjct: 241 MAPRARVAVYKVCWL--------GG-CFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYY 290
Query: 312 RDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371
RDG+AIGA A++ ILV+CSAGN+GP+ SSLSN+APW+ TVGAG+LDRDF +LG G
Sbjct: 291 RDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNG 350
Query: 372 MEIIGKTVTPYNL--KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRG 429
G ++ K+ P +YA + + N C+ G+L PEKVKGKIV+C RG
Sbjct: 351 KNFTGVSLFKGEALPDKLLPFIYAGNAS----NATNGNLCMTGTLIPEKVKGKIVMCDRG 406
Query: 430 SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 489
++ KG VK AGGVG+IL N+ ANG E DAH LPAT V I Y+ + N
Sbjct: 407 INARVQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPN 466
Query: 490 PTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKL 549
PTA I TV+ +P+P +A F+SRGPN++ P ILKPD+ APG+NILAAW+ A+ P+ L
Sbjct: 467 PTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGL 526
Query: 550 AFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPIT 609
A D R V++ I SGTSMSCPHV +HP+WS AAIRSALMTTA+ P+
Sbjct: 527 ASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLL 586
Query: 610 N-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFR------ 662
+ A G +TPF G+GH PT A +PGL+YD + EDYL +LC+ ++T+P R
Sbjct: 587 DIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCA--LNYTSPQIRSVSRRN 644
Query: 663 --C-PNKPPSALNLNYPSIAIPNLNGTVIVK--RTVTNVGGSKSVYFFSAKPPMGVSVKA 717
C P+K S +LNYPS A+ N++G K RTVT+VGG+ + GV +
Sbjct: 645 YTCDPSKSYSVADLNYPSFAV-NVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISV 703
Query: 718 NPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSF 774
P++L F +KKS+T+T + S G FG W+DG H+V SP+A+S+
Sbjct: 704 EPAVLNFKEANEKKSYTVTFTVDSSKP-SGSNS---FGSIEWSDGKHVVGSPVAISW 756
|
|
| TAIR|locus:2168057 SBT5.4 "AT5G59810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
Identities = 318/707 (44%), Positives = 425/707 (60%)
Query: 85 AARLSEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQD-------LLSKA 137
AA L E + HP+ S+ + G +WN + ++ L +KA
Sbjct: 97 AAILDENEAAEIAKHPDVVSVFPNK-----GRKLHTTHSWNFMLLAKNGVVHKSSLWNKA 151
Query: 138 RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYL 197
YG+D I+ +D GVWPESKSFSDEG G VP WKG C V CN+K+IGARY+
Sbjct: 152 GYGEDTIIANLDTGVWPESKSFSDEGYGAVPARWKGRCHKDVP-----CNRKLIGARYFN 206
Query: 198 KGFEQLYG-PLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 256
KG+ G P NA+ + + RD DGHG+HT ST AG VP A+ FG GTASGG+P A
Sbjct: 207 KGYLAYTGLPSNASYE--TCRDHDGHGSHTLSTAAGNFVPGANVFG-IGNGTASGGSPKA 263
Query: 257 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIA 316
R+A YK CW P G CF+AD+LAAI+ AI DGV VLS S+G + + DGIA
Sbjct: 264 RVAAYKVCW--PPVD---GAECFDADILAAIEAAIEDGVDVLSASVGGDAG-DYMSDGIA 317
Query: 317 IGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 376
IG+ +AVK+ + V CSAGNSGP ++SN+APW+ITVGA S+DR+F V L G G
Sbjct: 318 IGSFHAVKNGVTVVCSAGNSGPKSGTVSNVAPWVITVGASSMDREFQAFVELKNGQSFKG 377
Query: 377 KTVT-PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLS 435
+++ P +KM+ L+ AAD V + + C GSL P+KVKGKI++C+RG ++
Sbjct: 378 TSLSKPLPEEKMYSLISAADANVANGNVTDALLCKKGSLDPKKVKGKILVCLRGDNARVD 437
Query: 436 KGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 495
KGM+ AG G++L N A+GNE DAH LPA+ + Y D + Y+ ST +P IK
Sbjct: 438 KGMQAAAAGAAGMVLCNDKASGNEIISDAHVLPASQIDYKDGETLFSYLSSTKDPKGYIK 497
Query: 496 QARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRI 555
L+T+PAPFMA+F+SRGPN + P ILKPDITAPG+NI+AA++EA+ P+ L D R
Sbjct: 498 APTATLNTKPAPFMASFSSRGPNTITPGILKPDITAPGVNIIAAFTEATGPTDLDSDNRR 557
Query: 556 VKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 615
+ SGTSMSCPH+ +HP WS AAIRSA+MTT+ +NN+ P+ +
Sbjct: 558 TPFNTESGTSMSCPHISGVVGLLKTLHPHWSPAAIRSAIMTTSRTRNNRRKPMVDESFKK 617
Query: 616 ATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT-------NPVFRCPNKPP 668
A PFS+GSGH +P KAA PGLVYD + DYL +LC+ G++ T +P + C +
Sbjct: 618 ANPFSYGSGHVQPNKAAHPGLVYDLTTGDYLDFLCAVGYNNTVVQLFAEDPQYTC-RQGA 676
Query: 669 SALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIG 728
+ L+ NYPSI +PNL G++ V R + NVG + Y + P+GV V P L F+ G
Sbjct: 677 NLLDFNYPSITVPNLTGSITVTRKLKNVG-PPATYNARFREPLGVRVSVEPKQLTFNKTG 735
Query: 729 QKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSFA 775
+ K F +T+R T G YVFG WTD H VRSP+ V +
Sbjct: 736 EVKIFQMTLR-PLPVTPSG----YVFGELTWTDSHHYVRSPIVVQLS 777
|
|
| UNIPROTKB|Q0J050 Os09g0530800 "Os09g0530800 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1447 (514.4 bits), Expect = 3.4e-148, P = 3.4e-148
Identities = 329/772 (42%), Positives = 448/772 (58%)
Query: 19 AQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSA 78
+ + VYIV+ G +G + +QE HH L +V +E+ A + LYSY+H +GF+A
Sbjct: 20 SSSRSNVYIVYMGERHHGLRP-ELVQEAHHGMLAAVLGSEQAAMDAILYSYRHGFSGFAA 78
Query: 79 VLTPDEAARLSEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKAR 138
VLT +AARLS+ V L TTRSW+F+G+ N G +L ++R
Sbjct: 79 VLTGGQAARLSDWPGVVRVVRNRVLDLHTTRSWDFMGV--------NPSPSGGGILLESR 130
Query: 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 198
+G+D I+G++D G+WPES SF D+G+G VP+ WKG C G FN+S CN+KIIGA++Y+K
Sbjct: 131 FGEDSIIGVLDTGIWPESASFRDDGIGEVPRRWKGQCVAGEKFNASNCNRKIIGAKWYVK 190
Query: 199 GFEQLYGPLNATE--DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 256
G+E YG +N ++ + S RD GHGTHTAST AG V NAS F G A+G A GGA A
Sbjct: 191 GYEAEYGKMNTSDIYEFMSARDAVGHGTHTASTAAGALVANAS-FRGLAKGVARGGAQRA 249
Query: 257 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF-AFNRDGI 315
RLA+YK CWAT G+ C AD+LAA DDAI DGV V+S+S+G P A+ D +
Sbjct: 250 RLAVYKVCWAT-------GD-CTAADILAAFDDAIHDGVDVISVSLGQAPPLPAYVDDVL 301
Query: 316 AIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 375
+IG+ +AV ++V CSAGNSGP ++ N APW++TV AG++DR F+ ++LG +
Sbjct: 302 SIGSFHAVAKGVVVVCSAGNSGPYSETVINSAPWIVTVAAGTIDRIFLAKIILGNNSTYV 361
Query: 376 GKTVTPYNLKKMHP-----LVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430
G+T+ Y+ K HP +VYA D+ + C GSL VKG +VLC +
Sbjct: 362 GQTL--YSGK--HPSKSVRIVYAEDISSDNADDTDARSCTAGSLNATLVKGNVVLCFQTR 417
Query: 431 GFK-LSKGME-VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTN 488
+ S +E VK+A GVG+I S D +P V Y I Y S
Sbjct: 418 AQRSASVAVETVKKARGVGVIFAQFLTKDIASSLD---IPCVQVDYQVGTAILAYTTSMR 474
Query: 489 NPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSK 548
NP A +T++ AP +A F+SRGP++L P ILKPDI APG+NILAAWS A++ S
Sbjct: 475 NPVAQFSFPKTIVGELVAPEVAYFSSRGPSSLSPSILKPDIAAPGVNILAAWSPAAAISS 534
Query: 549 LAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPI 608
A V + I SGTSMSCPH+ +HP+WS AA++SAL+TTA + + +
Sbjct: 535 -AIGS--VNFKIDSGTSMSCPHISGVVALLKSMHPNWSPAAVKSALVTTANVHDAYGFEM 591
Query: 609 TN--ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGF------SFTNPV 660
+ A + A PF +G GH P +AA PGLVYD DY+ +LCS G+ S T
Sbjct: 592 VSEAAPYNDANPFDYGGGHVNPNRAAHPGLVYDMGVSDYMRFLCSMGYNTSAISSMTQQQ 651
Query: 661 FRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPS 720
C + P S LNLN PSI IP L G + V RTVTNVG + S Y + P GV V +PS
Sbjct: 652 TTCQHTPKSQLNLNVPSITIPELRGKLTVSRTVTNVGPALSKYRARVEAPPGVDVTVSPS 711
Query: 721 ILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAV 772
+L F+ +K F +T + ++ +G +Y FG W DG H VR P+ V
Sbjct: 712 LLTFNSTVRKLPFKVTFQ--AKLKVKG---RYTFGSLTWEDGTHTVRIPLVV 758
|
|
| UNIPROTKB|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1438 (511.3 bits), Expect = 3.1e-147, P = 3.1e-147
Identities = 318/768 (41%), Positives = 457/768 (59%)
Query: 26 YIVHFGGSDNGEKALHE----IQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLT 81
YIV+ G G A E ++HH L SV +++ A+ + LYSY +INGF+A L
Sbjct: 19 YIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLE 78
Query: 82 PDEAARLSE--EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARY 139
+ A +++ +VV+V S K L TTRSW+F+ ++ + + + R+
Sbjct: 79 EEVATQIARHPDVVTVMASTMLK--LHTTRSWDFMDMERDGQI------LPDSIWKHGRF 130
Query: 140 GQDVIVGLVDNGVWPESKSFSDEGM-GPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLK 198
GQDVI+ +D+GVWPES SF+DE + G VPK WKG C + S CNKK+IGARY+ K
Sbjct: 131 GQDVIIANLDSGVWPESNSFTDEEVVGEVPKRWKGSCSDTAKYGVS-CNKKLIGARYFNK 189
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
+ L A + + S RD +GHGTHT ST GR VP AS FG +A GTA GGAP AR+
Sbjct: 190 --DMLLSNPGAVDGNWS-RDTEGHGTHTLSTAGGRFVPRASLFG-YANGTAKGGAPRARV 245
Query: 259 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFA----FNRDG 314
A YK CW+ G C AD+LA + AI DG V+S+S G + P A F ++
Sbjct: 246 AAYKVCWS--------GE-CAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEP 296
Query: 315 IAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 374
+ +G+L+A + + V CSAGNSGP ++ N APW+ TV A ++DRDF V LG +
Sbjct: 297 VTLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHM 356
Query: 375 IGKTV--TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 432
G ++ T + +++ ++ A+D + + C PG+L PEKVK KIV+C+RG
Sbjct: 357 TGMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDI 416
Query: 433 -KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPT 491
+++KGM V AGG G+IL N +G++ D H LPAT + Y +A+ +++Y+ S+ NP
Sbjct: 417 PRVTKGMTVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPV 476
Query: 492 AIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAF 551
A I ++T + + +P +A F+SRGP+ P +LKPDI APG++ILAA++E SP+++
Sbjct: 477 ANISPSKTEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPN 536
Query: 552 DKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611
D+R +Y I SGTSM+CPH+ P+WS AA+RSA+MTTA ++N P+ +
Sbjct: 537 DERRSEYAILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDH 596
Query: 612 DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPV------FRCPN 665
DG AT F+FG+G+ P +A DPGLVYD S EDY ++LCS GF+ ++ F CP
Sbjct: 597 DGREATAFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPE 656
Query: 666 KPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFD 725
K P +LNYPSI +P L T V R + VG + Y + + P GV++ P+ L F
Sbjct: 657 KVPPMEDLNYPSIVVPALRHTSTVARRLKCVG-RPATYRATWRAPYGVNMTVEPAALEFG 715
Query: 726 HIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVS 773
G+ K F +T + SE + G K YVFG W+DG H VRSP+ V+
Sbjct: 716 KDGEVKEFKVTFK--SEKDKLG--KGYVFGRLVWSDGTHHVRSPVVVN 759
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| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 4.2e-145, Sum P(2) = 4.2e-145
Identities = 273/568 (48%), Positives = 355/568 (62%)
Query: 130 GQD-LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNK 188
G D L ++ DV+VG++D GVWPES+S+ D G+G VP WKG C G FNSS CN+
Sbjct: 113 GNDGLFPQSGTAGDVVVGVLDTGVWPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNR 172
Query: 189 KIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 248
K++GAR++ +G+E GP++ T + RSPRD DGHGTHT+ST AG V AS G FA GT
Sbjct: 173 KLVGARFFNRGYEAAMGPMDTTRESRSPRDDDGHGTHTSSTAAGAAVSGASLLG-FASGT 231
Query: 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF 308
A G AP AR+A+YK CW G CF +D+LA +D A+ DG VLS+S+G
Sbjct: 232 ARGMAPRARVAVYKVCWL--------GG-CFSSDILAGMDAAVADGCGVLSLSLGGGAA- 281
Query: 309 AFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 368
+ RD +AIGA A++ N+LV+CSAGN+GP S+LSN+APW+ TVGAG+LDRDF V L
Sbjct: 282 DYARDSVAIGAFAAMEQNVLVSCSAGNAGPGTSTLSNVAPWITTVGAGTLDRDFPAYVSL 341
Query: 369 GTGMEIIGKTVTPYNLKKMH----PLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIV 424
G G G V+ Y K + P+VYAA+ + N C+PG+LTPEKV GKIV
Sbjct: 342 GNGKNYTG--VSLYAGKALPSTPLPIVYAANAS----NSTAGNLCMPGTLTPEKVAGKIV 395
Query: 425 LCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 484
+C RG ++ KG V+ AGG G++L N+ NG E DAH LPA V + I Y+
Sbjct: 396 VCDRGVSARVQKGFVVRDAGGAGMVLSNTATNGEELVADAHLLPAAGVGAKEGAAIKAYV 455
Query: 485 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 544
S +PTA I A T + +P+P +A F+SRGPN L P ILKPDI APG+NILAAW+ +
Sbjct: 456 ASDPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLTPEILKPDIIAPGVNILAAWTGKA 515
Query: 545 SPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKN-- 602
P+ +A D R V + I SGTSMSCPHV HP+WS AA+RSALMTTA+
Sbjct: 516 GPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSAHPEWSPAAVRSALMTTAYSTYAG 575
Query: 603 -NKALPITNA-DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT--- 657
A P+ +A G+ ATPF +G+GH P A DPGLVYD DY+ +LC+ ++ T
Sbjct: 576 AGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLVYDLGTADYVDFLCALNYTSTMIA 635
Query: 658 ----NPVFRCPN-KPPSALNLNYPSIAI 680
+ + C K S NLNYPS A+
Sbjct: 636 AVARSKSYGCTEGKAYSVYNLNYPSFAV 663
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| TAIR|locus:2091010 AT3G14240 "AT3G14240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 325/784 (41%), Positives = 442/784 (56%)
Query: 16 ASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSING 75
+S++ YIVH D+ K I TH + S + + S +++Y +G
Sbjct: 18 SSASSSNSLTYIVHV---DHEAKP--SIFPTHFHWYTSSLASLTSSPPSIIHTYDTVFHG 72
Query: 76 FSAVLTPDEAARLSEE--VVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDL 133
FSA LT +A++L + V+SV P L TTRS EF+GL K L
Sbjct: 73 FSARLTSQDASQLLDHPHVISVIPEQVRH--LHTTRSPEFLGLRSTDKAG---------L 121
Query: 134 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGA 193
L ++ +G D+++G++D GVWPE SF D G+GPVP WKG C F S CN+K++GA
Sbjct: 122 LEESDFGSDLVIGVIDTGVWPERPSFDDRGLGPVPIKWKGQCIASQDFPESACNRKLVGA 181
Query: 194 RYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGA 253
R++ G+E G +N T + RSPRD DGHGTHTAS AGR V AS G +A G A+G A
Sbjct: 182 RFFCGGYEATNGKMNETTEFRSPRDSDGHGTHTASISAGRYVFPASTLG-YAHGVAAGMA 240
Query: 254 PLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRD 313
P ARLA YK CW + C+++D+LAA D A+ DGV V+S+S+G + D
Sbjct: 241 PKARLAAYKVCW---------NSGCYDSDILAAFDTAVADGVDVISLSVG-GVVVPYYLD 290
Query: 314 GIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 373
IAIGA A+ I V+ SAGN GP +++N+APW+ TVGAG++DRDF V LG G
Sbjct: 291 AIAIGAFGAIDRGIFVSASAGNGGPGALTVTNVAPWMTTVGAGTIDRDFPANVKLGNGKM 350
Query: 374 IIGKTVT--P-YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430
I G +V P + +M+PLVY ++ G ++ CL GSL P VKGKIVLC RG
Sbjct: 351 ISGVSVYGGPGLDPGRMYPLVYGGSLL--GGDGYSSSLCLEGSLDPNLVKGKIVLCDRGI 408
Query: 431 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI------ 484
+ +KG V++ GG+G+I+ N +G D H LPAT+V +I YI
Sbjct: 409 NSRATKGEIVRKNGGLGMIIANGVFDGEGLVADCHVLPATSVGASGGDEIRRYISESSKS 468
Query: 485 KSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEAS 544
+S+ +PTA I T L +PAP +A+F++RGPN P ILKPD+ APGLNILAAW +
Sbjct: 469 RSSKHPTATIVFKGTRLGIRPAPVVASFSARGPNPETPEILKPDVIAPGLNILAAWPDRI 528
Query: 545 SPSKLAFDKRIVKYTIFSGTSMSCPHVXXXXXXXXXIHPDWSSAAIRSALMTTAWMKNNK 604
PS + D R ++ I SGTSM+CPHV HPDWS AAIRSAL+TTA+ +N
Sbjct: 529 GPSGVTSDNRRTEFNILSGTSMACPHVSGLAALLKAAHPDWSPAAIRSALITTAYTVDNS 588
Query: 605 ALPITN-ADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTN--PVF 661
P+ + + G+ ++ +GSGH PTKA DPGLVYD + DY+ +LC+ ++ TN +
Sbjct: 589 GEPMMDESTGNTSSVMDYGSGHVHPTKAMDPGLVYDITSYDYINFLCNSNYTRTNIVTIT 648
Query: 662 R----CPN--KPPSALNLNYPSIAI------PNLNGTVIVKRTVTNVGGSKSVYFFSAKP 709
R C + NLNYPS ++ + T + RTVTNVG S SVY +P
Sbjct: 649 RRQADCDGARRAGHVGNLNYPSFSVVFQQYGESKMSTHFI-RTVTNVGDSDSVYEIKIRP 707
Query: 710 PMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSP 769
P G +V P L F +GQK SF + V+ G T G W+DG V SP
Sbjct: 708 PRGTTVTVEPEKLSFRRVGQKLSFVVRVKTTEVKLSPGATNVET-GHIVWSDGKRNVTSP 766
Query: 770 MAVS 773
+ V+
Sbjct: 767 LVVT 770
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XI000523 | hypothetical protein (775 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 775 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-111 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 4e-35 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 8e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-28 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 4e-21 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-17 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 6e-16 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-15 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-14 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-14 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-14 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-14 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-14 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-13 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 4e-13 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 5e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 5e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-11 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 4e-11 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-10 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-10 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 6e-10 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-09 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-09 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 7e-09 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 8e-09 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 5e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 7e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 8e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-06 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 8e-06 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 1e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-05 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 4e-05 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 5e-05 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 7e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 8e-05 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 9e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 9e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 1e-04 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 1e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 1e-04 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 3e-04 | |
| cd00538 | 126 | cd00538, PA, PA: Protease-associated (PA) domain | 5e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 7e-04 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 7e-04 | |
| cd02133 | 143 | cd02133, PA_C5a_like, PA_C5a_like: Protease-associ | 0.001 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.001 | |
| PTZ00262 | 639 | PTZ00262, PTZ00262, subtilisin-like protease; Prov | 0.001 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 0.003 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 341 bits (876), Expect = e-111
Identities = 134/265 (50%), Positives = 162/265 (61%), Gaps = 20/265 (7%)
Query: 103 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDE 162
Y L TTRS +F+GL G LL A G+ +I+G++D G+WPE SF+D
Sbjct: 1 YQLHTTRSPDFLGLPGA---------WGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADV 51
Query: 163 GMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222
G GP P +W G C TG FN CN K+IGARY+ G++ YG N+ + RSPRD DGH
Sbjct: 52 GGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDA-YGGFNSDGEYRSPRDYDGH 110
Query: 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 282
GTHTAST AG V NAS GGFA GTASG AP AR+A+YK CW CF +D
Sbjct: 111 GTHTASTAAGNVVVNAS-VGGFAFGTASGVAPRARIAVYKVCW--------PDGGCFGSD 161
Query: 283 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 342
+LAAID AI DGV V+S SIG P D IAI L+AV+ I VA SAGNSGP S+
Sbjct: 162 ILAAIDQAIADGVDVISYSIGGGSPD-PYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220
Query: 343 LSNLAPWLITVGAGSLDRDFVGPVV 367
+ N+APW+ TV A +L D P V
Sbjct: 221 VPNVAPWVTTVAASTLKPDIAAPGV 245
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-35
Identities = 64/130 (49%), Positives = 77/130 (59%), Gaps = 6/130 (4%)
Query: 366 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 425
V LG G I+G+++ P NLK +PLVY + + CLPGSL P KVKGKIVL
Sbjct: 2 VTLGNGKTIVGQSLYPGNLK-TYPLVY----KSANSGDVDASLCLPGSLDPSKVKGKIVL 56
Query: 426 CMRGSGFKL-SKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYI 484
C RG +KG VK AGG G+IL N P +G + DAH LPA V Y+D I YI
Sbjct: 57 CDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
Query: 485 KSTNNPTAII 494
ST+NPTA I
Sbjct: 117 NSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 8e-33
Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Query: 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 584
LKPDI APG++ILAAW+ D R + SGTSM+ PHVA AALLK+ HPD
Sbjct: 236 LKPDIAAPGVDILAAWT---PEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 585 WSSAAIRSALMTTAW 599
WS AAI+SALMTTA+
Sbjct: 293 WSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 53/144 (36%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 488 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPS 547
P+AI A TV A + +SRGP +KPDI APG++I++ + +
Sbjct: 171 TAPSAITVGASTVADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAPGSGT-- 227
Query: 548 KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 607
Y SGTSM+ PHVA AAALLK HPDWS A I++ALM T A P
Sbjct: 228 ---------GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNT-------AKP 271
Query: 608 ITNADGSIATPFSFGSGHFRPTKA 631
+ ++DG + G+G +A
Sbjct: 272 LYDSDGVVYPVSRQGAGRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 4e-21
Identities = 55/147 (37%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 211 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKA 270
D S D GHGTH A +AG G GT G AP A L YK
Sbjct: 53 LGDASAGDATGHGTHVAGIIAGN---------GVNVGTIKGVAPKADLYAYKVL------ 97
Query: 271 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 330
G + ++AAI+ A+ DG+ V+++S+G++ + D IAI NAVK ++V
Sbjct: 98 --GPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNGPDDPDAIAIN--NAVKAGVVVV 153
Query: 331 CSAGNSGPAPSSLSN--LAPWLITVGA 355
+AGNSGPAP ++ + AP ITVGA
Sbjct: 154 AAAGNSGPAPYTIGSPATAPSAITVGA 180
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
++ F+SRGP +KPD+ APG NI++ S +P Y SGTSM+
Sbjct: 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSG----YFEMSGTSMAT 233
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHV+ A ALL +P + ++ L TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 6e-16
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVA 572
P++ KPD+ APG+++ +A A+ +YT SGTSM+ PHVA
Sbjct: 177 LVSAPDSPPDEYTKPDVAAPGVDVYSARQGANG---------DGQYTRLSGTSMAAPHVA 227
Query: 573 AAAALLKAIHPDWSSAAIRSALMTTAW 599
AALL A HPD S I+ AL TA+
Sbjct: 228 GVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 23/156 (14%)
Query: 204 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 263
+ P D +GHGTH A +A G G AP A+L K
Sbjct: 28 NDDDDNENGPTDPDDGNGHGTHVAGIIAASANN----------GGGVGVAPGAKLIPVKV 77
Query: 264 CWATPKASKAAGNTCFEADMLAAIDDAIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNA 322
S +D+ AAID A D G V+++S+G + AI
Sbjct: 78 LDGDGSGS--------SSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYA-L 128
Query: 323 VKHNILVACSAGNSGPAPSSLSN---LAPWLITVGA 355
K +LV +AGN GP + +P +I VGA
Sbjct: 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGA 164
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 508 FMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 567
+A+F++ G KPDI APG NIL++ Y SGTSM+
Sbjct: 176 TIADFSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLGG----------YDSHSGTSMA 222
Query: 568 CPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
P VA AAALL + +P + +R+ L+TTA
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTA 253
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 49/129 (37%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 510 ANFTSRGP-NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+ F+S GP N L LKPD+ APG NIL+ + A Y + SGTSM+
Sbjct: 189 SYFSSWGPTNELY---LKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMAT 234
Query: 569 PHVAAAAALLK-AIHPDWSSAAIRSALMTTAWMKNNKALPI---TNADGSIATPFSFGSG 624
P+VA AAALL A H S A +R L +TA K LP T+A +A G+G
Sbjct: 235 PYVAGAAALLIQARHGKLSPAELRDLLASTA-----KPLPWSDGTSALPDLAPVAQQGAG 289
Query: 625 HFRPTKAAD 633
KA
Sbjct: 290 LVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 44/206 (21%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
N +P D +GHGTH A +AG G + G G AP A L K +
Sbjct: 32 NTVNGRTTPYDDNGHGTHVAGIIAGS--------GRASNGKYKGVAPGANLVGVKVLDDS 83
Query: 268 PKASKAAGNTCFEADMLAAIDDAI----RDGVHVLSISIGTNQPFAFNRDGIAIGALNAV 323
S E+D++A ID + + + V+++S+G ++ D +
Sbjct: 84 GSGS--------ESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLW 135
Query: 324 KHNILVACSAGNSGPAPSSLS---NLAPWLITVGAGSLDRDFVGPVVLGTGMEII----G 376
I+V +AGNSGP P +++ N +P +ITVGA +D + G + I
Sbjct: 136 DAGIVVVVAAGNSGPGPGTITSPGN-SPKVITVGA--VDDN-------GPHDDGISYFSS 185
Query: 377 KTVTPYNLKKMHPLVYAADVVVPGVH 402
+ T K P DVV PG +
Sbjct: 186 RGPTGDGRIK--P-----DVVAPGEN 204
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDE 84
YIV F + + +H S+ S K EE A AS LYSYKH NGF+A LT +E
Sbjct: 1 TYIVKFKDGV----SKAAVFSSHKSWHASSK--EEAAGASILYSYKHGFNGFAAKLTEEE 54
Query: 85 AARLSE--EVVSVYPSHP 100
A +L + +V V P
Sbjct: 55 AEKLRKHPDVEYVEPDQV 72
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 8e-14
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 510 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 569
A+F+S GP ++ APG++IL+ + Y SGTSM+ P
Sbjct: 163 ASFSSTGPE--------VELAAPGVDILSTY-------------PNNDYAYLSGTSMATP 201
Query: 570 HVAAAAALLKAIHPDWSSAAIRSALMTT 597
HVA AAL+ + P+ ++A +R AL T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 18/102 (17%)
Query: 507 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSM 566
+A+F+SRGP +KPD+ APG IL+A S + YT SGTSM
Sbjct: 199 DTVASFSSRGPT--YDGRIKPDLVAPGTGILSARSGGGGIGDTSDSA----YTSKSGTSM 252
Query: 567 SCPHVAAAAALL----------KAIHPDWSSAAIRSALMTTA 598
+ P VA AAALL +P S+A +++ L+ +A
Sbjct: 253 ATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 40/118 (33%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 483 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 542
+ N P A ++ V T +A+F+SRGP+ +KPDI+APG+NI +A
Sbjct: 161 RCSTLNAPPANYPESFAVGATDRNDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG 218
Query: 543 ASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA--AIRSALMTTA 598
Y SGTSM+ PHVA AALL + +P A + L TA
Sbjct: 219 GG-------------YGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETA 263
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Query: 526 KPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 585
DI APG +IL++ + Y SGTSM+ P VA AALL + +PD
Sbjct: 181 GVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVAGVAALLLSANPDL 229
Query: 586 SSAAIRSALMTT 597
+ A +++AL++T
Sbjct: 230 TPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 20/100 (20%)
Query: 499 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKY 558
+V T +A+F++ G +D + APG++IL+ Y
Sbjct: 179 SVAATDSNDALASFSNYGKKTVD-------LAAPGVDILSTSPGGG-------------Y 218
Query: 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
SGTSM+ PHVA AAALL +++P+ ++A I+ A++++A
Sbjct: 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 5e-12
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
DI APG++IL+AW + + SGTSM+ PHVA AA L ++ PD S
Sbjct: 194 DIFAPGVDILSAWIGSDT-----------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 588 AAIRSALMTTA 598
A +++ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 48/163 (29%), Positives = 62/163 (38%), Gaps = 45/163 (27%)
Query: 451 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTV------LHTQ 504
GN +G+ S + T A TV +
Sbjct: 184 GNDGNSGSGTSKPLAT--------------NNPDTGTVGSPATADDVLTVASANKKVPNP 229
Query: 505 PAPFMANFTSRGPNA-LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSG 563
M+ F+S GP LD LKPDITAPG NI S + + Y SG
Sbjct: 230 NGGQMSGFSSWGPTPDLD---LKPDITAPGGNIY---------STVNDNT----YGYMSG 273
Query: 564 TSMSCPHVAAAAAL----LKAIHPDWSSA----AIRSALMTTA 598
TSM+ PHVA A+AL LK +P S +++ LM TA
Sbjct: 274 TSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTA 316
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 8e-12
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 33/155 (21%)
Query: 208 NATEDDRS-PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC-- 264
N T DD + +D +GHGTH A +A N G G AP A L K
Sbjct: 27 NFTGDDNNDYQDGNGHGTHVAGIIAAL--DN--GVGV------VGVAPEADLYAVKVLND 76
Query: 265 --WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA 322
T +D++A I+ AI +G+ ++++S+G R+ I A
Sbjct: 77 DGSGT------------YSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIK----KA 120
Query: 323 VKHNILVACSAGNSGPAPSSLSNLA--PWLITVGA 355
ILV +AGNSG SS A P +I VGA
Sbjct: 121 YAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGA 155
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-11
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 21/96 (21%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+A F+ RGP +KPDI APG+NIL A SP YT SGTS++
Sbjct: 359 IAIFSGRGPTR--DGRIKPDIAAPGVNILTA-----SPGG--------GYTTRSGTSVAA 403
Query: 569 PHVAAAAALL--KAIH----PDWSSAAIRSALMTTA 598
VA A ALL I P I++ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 56/237 (23%), Positives = 77/237 (32%), Gaps = 75/237 (31%)
Query: 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG 199
G V VG++D+G+ F+ ++ A YY
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG---------------------------RVSEASYY--- 31
Query: 200 FEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLA 259
+A S D D HGTH A +A R GG G A A L
Sbjct: 32 ----VAVNDAG--YASNGDGDSHGTHVAGVIAAARD------GGGMHGVAPD----ATLY 75
Query: 260 IYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTN------------QP 307
+A + AG+T +AD+ AA D GV +++ S G N
Sbjct: 76 SARASAS-------AGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSA 128
Query: 308 FAFNRDGIAIGALNAVKHNILVACSAGNSGPA-PSSLSNLAPWL--------ITVGA 355
+A A L +AGN G A PS + P+L I V A
Sbjct: 129 ATQGNTLLAA-LARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVA 184
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 31/159 (19%)
Query: 204 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 263
YG N +D P D +GHGTH A + A G G A G A ++ K
Sbjct: 48 YGW-NFVNNDNDPMDDNGHGTHVAGIIG--------AVGNNGIGIA-GVAWNVKIMPLKF 97
Query: 264 CWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAV 323
+ +G T +D + AID A+ G +++ S G P RD IA A+
Sbjct: 98 L-----GADGSGTT---SDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAI 145
Query: 324 KHNILVACSAGNSG------PA-PSSLSNLAPWLITVGA 355
IL +AGN G P P+S +I+V A
Sbjct: 146 DAGILFVAAAGNDGTNNDKTPTYPASYDL--DNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F+S GP A D LKPD+ A G I + + T +GTS SC
Sbjct: 186 KASFSSIGPTA-DGR-LKPDVMALGTGIYVINGDGN-------------ITYANGTSFSC 230
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
P +A A L HP+W++ I+ A++ +A
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 6e-10
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 397 VVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456
+V + ++ C P L VKGKIVL RG + K +RAG G+I+ N+
Sbjct: 10 LVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTG 69
Query: 457 GNE---YSYDAHYLPATAVLYDDA 477
G +P + Y+D
Sbjct: 70 GLGGTVGDPSDVTIPVVFISYEDG 93
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 26/173 (15%)
Query: 191 IGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTAS 250
+ RY + Y ++ D D +GHGTH A +A G
Sbjct: 16 LSGRYIGLAYRNGYDFVDNDPDPTPDDDNNGHGTHVAGIIAA---------GDNNGSGGV 66
Query: 251 GGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR--DGVHVLSISIGTN-QP 307
G AP A+L K + G +++ AI+ A + + V+++S+G P
Sbjct: 67 GVAPNAKLESVKVL------PGSGGTD---SELAGAIEWAAERPNDIRVINMSLGPVDGP 117
Query: 308 FAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGA 355
+ I A+N A L +AGN G + A +ITVGA
Sbjct: 118 PSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNPVSDPASANNIITVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 23/149 (15%)
Query: 189 KIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 248
K+ G Y G Y N D P D GHGTH A +A PNA F
Sbjct: 40 KVAGG-YDFVG--DDYDGTNPPVPDDDPMDCQGHGTHVAGIIAAN--PNAYGF------- 87
Query: 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPF 308
+G AP A L Y+ + ++ E ++AA A DG V++ S+G P
Sbjct: 88 -TGVAPEATLGAYRV-FGCSGST-------TEDTIIAAFLRAYEDGADVITASLGG--PS 136
Query: 309 AFNRDGIAIGALNAVKHNILVACSAGNSG 337
++ D A+ A V ++V +AGN G
Sbjct: 137 GWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 14/71 (19%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
D++APG IL+ + Y SGTSM+ PHVA AALL + P S+
Sbjct: 200 DVSAPGGGILSTTPDGD-------------YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 588 AAIRSALMTTA 598
+ +R AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 25/156 (16%)
Query: 207 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 266
N D GHGTH + T+ GG A+G G AP A L K
Sbjct: 30 ENRRISATEVFDAGGHGTHVSGTIG----------GGGAKGVYIGVAPEADLLHGKVL-- 77
Query: 267 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG-TNQPFAFNRDGIAIGALNAVKH 325
+ ++A ++ A+ V+S+S+G T + A+ AL+ +
Sbjct: 78 -------DDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEE--AVEALSN-QT 127
Query: 326 NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRD 361
L SAGN G S A ++VGA +DRD
Sbjct: 128 GALFVVSAGNEGHGTSGSPGSAYAALSVGA--VDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 40/210 (19%)
Query: 209 ATEDDRSPRDMDG--HGTHTASTVAGRRVPNAS--AFGGFAEGTASGGAPLARLAIYKAC 264
A +D + DG HG H A VAG N G +G A P A+L K
Sbjct: 69 ADNNDDILDEDDGSSHGMHVAGIVAG----NGDEEDNGEGIKGVA----PEAQLLAMKV- 119
Query: 265 WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVK 324
S G + ++ AI+DA++ G V+++S+G+ F D A +
Sbjct: 120 -----FSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRARE 174
Query: 325 HNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRD------FVGPVVLGTGMEI 374
++V +AGN G + S L+ P TVG+ + D V G ++
Sbjct: 175 AGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPNPNGGQM 234
Query: 375 IGKT---VTP-YNLKKMHPLVYAADVVVPG 400
G + TP +LK P D+ PG
Sbjct: 235 SGFSSWGPTPDLDLK---P-----DITAPG 256
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 505 PAPFMANFTSRGPNALDPYILKPDITAP-GLNILAAWSEASSPSKLAFDKRIVKYTIFSG 563
R P KPD+TAP G+N P+ F G
Sbjct: 171 TPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDGDGPPN-------------FFG 215
Query: 564 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
TS + PH A AAL+ + +P + A IR AL +TA
Sbjct: 216 TSAAAPHAAGVAALVLSANPGLTPADIRDALRSTA 250
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 7e-07
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 510 ANFTSRGPNALDPYILKPDITAPGLNIL-------AAWSEASSPSKLAFDKRIVKYTIFS 562
A++++ GP D++APG + S + S Y
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGS-----TYGFLQ 250
Query: 563 GTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597
GTSM+ PHVA AAL+K+++P + A I S L +T
Sbjct: 251 GTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 588
+ APG NI + + + Y SGTS + PHV+ AAALL P ++
Sbjct: 208 LAAPGENIYSTDPDGGN-----------GYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 589 AIRSALMTTA 598
+R L+TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 43/158 (27%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ D D +GHGTH A TV G+ G A A L K
Sbjct: 52 DFVGGD-PDSDCNGHGTHVAGTVGGKTY---------------GVAKKANLVAVKVLDCN 95
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAIGALNA 322
+ + ++A ++ D V ++S+G A + A+ A A
Sbjct: 96 GSGT--------LSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDA---AVAA--A 142
Query: 323 VKHNILVACSAGNSG-PA----PSSLSNLAPWLITVGA 355
V ++V +AGNS A P+S AP ITVGA
Sbjct: 143 VNAGVVVVVAAGNSNQDACNYSPAS----APEAITVGA 176
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 20/89 (22%)
Query: 510 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 569
++F+ GP D+ APG NI++ SGTS + P
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSL------------SPGGDGLATTSGTSFAAP 230
Query: 570 HVAAAAALLKAIHPDWSSAAIRSALMTTA 598
V+ AAL+++ PD ++A +R + TA
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATA 259
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 19/151 (12%)
Query: 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLAR-LAIYK--ACWATPKASKAA 274
D DGHGT A +AGR GF SG AP AR L I + A + + +
Sbjct: 49 DCDGHGTLVAGIIAGRPGEG----DGF-----SGVAPDARILPIRQTSAAFEPDEGTSGV 99
Query: 275 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL--NAVKHNILVACS 332
G+ + AI A G V++IS+ P D +GA A+ ++V +
Sbjct: 100 GDL---GTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYALDKGVVVVAA 156
Query: 333 AGNSGPAPSSLSNLAP-WLITV-GAGSLDRD 361
AGN+G + + P W V GS+DRD
Sbjct: 157 AGNTGGDGQKTTVVYPAWYPGVLAVGSIDRD 187
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 45/174 (25%), Positives = 62/174 (35%), Gaps = 41/174 (23%)
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
+ Y + + P D +GHGTHT T+ G +G G AP AR
Sbjct: 31 SADHDYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDG----------DGQQIGVAPGARW 80
Query: 259 AIYKACWATPKASKAAGNTCFEAD-------MLAAIDDAIRD-----GVHVLSISIGTNQ 306
+A N +AD MLA D A V++ S G
Sbjct: 81 IACRAL---------DRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS 131
Query: 307 PFAFNRDGI--AIGALNAVKHNILVACSAGNSGPAPSSL-SNLA--PWLITVGA 355
+ + + A+ A A I +AGN GP S+L + A P VGA
Sbjct: 132 G---DNEWLQPAVAAWRAA--GIFPVFAAGNDGPRCSTLNAPPANYPESFAVGA 180
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 29/156 (18%)
Query: 206 PLNATEDDRSPR-DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC 264
PL HGTH AS + G+ P +S G APL R
Sbjct: 35 PLFTYAAAACQDGGASAHGTHVASLIFGQ--PCSSVEGI---------APLCRGLN---- 79
Query: 265 WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGAL-NAV 323
P ++ C + D+ AI+ A+ G H+++IS G + G A L NAV
Sbjct: 80 --IPIFAEDRRG-CSQLDLARAINLALEQGAHIINISGG-----RLTQTGEADPILANAV 131
Query: 324 K----HNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
+N+L+ +AGN G A + P ++ VGA
Sbjct: 132 AMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGA 167
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.4 bits (114), Expect = 1e-05
Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 23/174 (13%)
Query: 190 IIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTA 249
+ + L G G + + D +GHGTH A T+A N + G A G
Sbjct: 153 VDASHPDLAGSAVAGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNGAGVAGVAPGAK 212
Query: 250 SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG--VHVLSISIGTNQP 307
+ +G +D+ I+ A G V+++S+G +
Sbjct: 213 LLLVK------------VLGSGGGSGEL---SDVAEGIEGAANLGGPADVINLSLGGSLS 257
Query: 308 FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW------LITVGA 355
+ + A A +++ +AGN G S P +I VGA
Sbjct: 258 DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGA 311
|
Length = 508 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 22/95 (23%)
Query: 527 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 586
DI APG++I++A Y SGTSM+ PHVA AAL W+
Sbjct: 213 VDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAAL-------WA 252
Query: 587 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 621
A ++ A +A A
Sbjct: 253 EALPKAGG--RALAALLQARLTAARTTQFAPGLDL 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (113), Expect = 2e-05
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 503 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS 562
+ +A+F++ G DI APG+NIL S + Y S
Sbjct: 312 LDLSDTVASFSNDGSPT------GVDIAAPGVNIL------SLSAVNTLPGDGADYVTLS 359
Query: 563 GTSMSCPHVAAAAALLKAIHP-DWSSAAIRSALMTTA 598
GTSM+ PHV+ AAL+ + +P + + A +R+ ++TTA
Sbjct: 360 GTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 32/129 (24%)
Query: 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNT 277
D GHGT A +A A G G AP + Y+ + +
Sbjct: 51 DKLGHGTAVAGQIA-------------ANGNIKGVAPGIGIVSYRVF--------GSCGS 89
Query: 278 CFEADMLAAIDDAIRDGVHVLSISIG---------TNQPFAFNRDGIAIGALNAVKHNIL 328
+ ++ AI DA DGV V+++S+G + +N AI A +
Sbjct: 90 AESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINY--AKSKGSI 147
Query: 329 VACSAGNSG 337
V +AGN G
Sbjct: 148 VVAAAGNDG 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 29/152 (19%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ ++D D +GHGTH A +A A+ G G A G AP A++ K A
Sbjct: 56 DFVDNDSDAMDDNGHGTHVAGIIA------AATNNG--TGVA-GVAPKAKIMPVKVLDAN 106
Query: 268 PKASKAAGNTCFEADMLAAIDDAIR----DGVHVLSISIGTNQPFAFNRDGIAIGALNAV 323
S LA I + IR G V+++S+G ++ I A
Sbjct: 107 GSGS------------LADIANGIRYAADKGAKVINLSLGGGLGSTALQEAINY----AW 150
Query: 324 KHNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
++V +AGN G + S P I V A
Sbjct: 151 NKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAA 182
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 7e-05
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 26/150 (17%)
Query: 214 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 273
+ D+DGHGTH A +AG+ ++S G AP A+L S
Sbjct: 48 DTKDDVDGHGTHVAGIIAGKGNDSSSI------SLYKGVAPKAKLYFQ----DIGDTSGN 97
Query: 274 AGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACS 332
+ + + + DA G + S S G+ + A A + +IL S
Sbjct: 98 LSSPPDLNKLFSPMYDA---GARISSNSWGSPVNNGYTLLARAYDQF-AYNNPDILFVFS 153
Query: 333 AGNSGP-------APSSLSNLAPWLITVGA 355
AGN G +P++ N ++TVGA
Sbjct: 154 AGNDGNDGSNTIGSPATAKN----VLTVGA 179
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 42/161 (26%), Positives = 60/161 (37%), Gaps = 20/161 (12%)
Query: 197 LKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA 256
L G +L N ++ D+DGHGT A A +G AP A
Sbjct: 17 LSGKPKLVPGWNFVSNNDPTSDIDGHGTACAGVAAAVGNNGLGV---------AGVAPGA 67
Query: 257 RLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGI- 315
+L + + A + +D+ AI A +G V+S S G + I
Sbjct: 68 KLMPVRIADSLGYA--------YWSDIAQAITWAADNGADVISNSWGGSDSTESISSAID 119
Query: 316 -AIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
A K +V +AGNSG + SS P +I V A
Sbjct: 120 NAATYGRNGK-GGVVLFAAGNSGRSVSSGYAANPSVIAVAA 159
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 49/195 (25%), Positives = 71/195 (36%), Gaps = 53/195 (27%)
Query: 180 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 239
AF N +I+G ++ ++ + D D HGT ST+AG
Sbjct: 19 AFKHLFKNLRILGEYDFVDN-----------SNNTNYTD-DDHGTAVLSTMAG------- 59
Query: 240 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADM-LAAIDDAIRDGVHVL 298
+ G G AP A + + A T E D +AA + A GV ++
Sbjct: 60 ----YTPGVMVGTAPNASYYLART-------EDVASETPVEEDNWVAAAEWADSLGVDII 108
Query: 299 SISIGTNQPFAFNR-------DG----IAIGALNAVKHNILVACSAGNSGP-------AP 340
S S+G DG I+ A A +LV SAGN G AP
Sbjct: 109 SSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAP 168
Query: 341 SSLSNLAPWLITVGA 355
+ A +++VGA
Sbjct: 169 AD----AENVLSVGA 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 508 FMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 567
+ANF++ G +D + APG I + + +Y SGTSM+
Sbjct: 220 LVANFSNYGKKNVD-------VFAPGERIYSTTPDN-------------EYETDSGTSMA 259
Query: 568 CPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
P V+ AAL+ + +P+ ++ ++ ++ +
Sbjct: 260 APVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 274
+D GHGTH A T+ GR VP G G A A +A+ K
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIG------KVLGDG 84
Query: 275 GNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGA 319
G + +LA I A+ +G V+S+S+G + P ++ G G
Sbjct: 85 GGG--DGGILAGIQWAVANGADVISMSLGADFPGLVDQ-GWPPGL 126
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 510 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCP 569
A++++ G Y+ D+ APG+ I + A D Y FSGTS + P
Sbjct: 167 ASYSNYGN-----YV---DLVAPGVGI----WTTGTGRGSAGDYPGGGYGSFSGTSFASP 214
Query: 570 HVAAAAALLKAIHPDWSSAAIRSALMTT 597
A AAL+ + +P+ + A + L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 13/71 (18%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
D APG+++ A Y SGTS + P V AA ALL P
Sbjct: 168 DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAALALLLQASPLAPD 214
Query: 588 AAIRSALMTTA 598
A T
Sbjct: 215 DARARLAATAK 225
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 27/134 (20%)
Query: 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGN 276
RD +GHGTH A AG G G AP A L + K K
Sbjct: 75 RDENGHGTHVAGIAAGN---------GDNNPDFKGVAPEAELIVVKL--KQAKKYLREFY 123
Query: 277 ---TCF-EADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAI--GALNAV-- 323
+ E D++ AI + V++IS+GTN + DG ++ ++A+
Sbjct: 124 EDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFG---SHDGTSLLERYIDAISR 180
Query: 324 KHNILVACSAGNSG 337
I V AGN G
Sbjct: 181 LRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 409 CLPGSLTPEK--VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY------ 460
C G+ VKGKIVL RG K ++AG +I+ N+ +
Sbjct: 33 CGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL 92
Query: 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNN 489
+P + Y D + +++
Sbjct: 93 ESTDPSIPTVGISYADGEALLSLLEAGKT 121
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 510 ANFTSRGPNALDPYILKPDITAPGLN-ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F++ G DI APG+ IL+ + Y SGTSM+
Sbjct: 199 ASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDGG-------GNYEYLSGTSMAA 243
Query: 569 PHVAAAAALLKAIHPDWSSA 588
PHV+ AAL+ + PD +
Sbjct: 244 PHVSGVAALVLSKFPDVFTP 263
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 32/95 (33%), Positives = 41/95 (43%), Gaps = 27/95 (28%)
Query: 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS-----GTSMS 567
+SRGP A D L I+APG I AS P +T+ GTSMS
Sbjct: 333 SSRGPTA-DGA-LGVSISAPGGAI------ASVP----------NWTLQGSQLMNGTSMS 374
Query: 568 CPHVAAAAAL----LKAIHPDWSSAAIRSALMTTA 598
P+ AL LKA ++ ++R AL TA
Sbjct: 375 SPNACGGIALLLSGLKAEGIPYTPYSVRRALENTA 409
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 419 VKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS-PANGNEYSYDAHYLPATAVLYDDA 477
VKGKI L RG + K K AG VG+I+ N+ +A ++P + +D
Sbjct: 46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDG 105
Query: 478 IKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 517
E +K+ + + T P +A+F+SRGP
Sbjct: 106 ----EALKAALESSKKLT-FNTKKEKATNPDLADFSSRGP 140
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 24/122 (19%)
Query: 486 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG------------ 533
+ + I +AR PAP A TS GP P +KPD+ A G
Sbjct: 177 AITSDDDITDRARYS-AVGPAPAGA-TTSSGPG--SPGPIKPDVVAFGGNLAYDPSGNAA 232
Query: 534 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 593
L+ + SSPS F GTS + P A AA L A P+ S IR A
Sbjct: 233 DGDLSLLTTLSSPSGGGF-------VTVGGTSFAAPLAARLAAGLFAELPELSPETIR-A 284
Query: 594 LM 595
L+
Sbjct: 285 LL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 17/78 (21%)
Query: 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 588
+ APG NI + + + S Y +GTSM+ PHVAA A+L+ +I+P S
Sbjct: 534 LAAPGTNIYSTFPKNS-------------YRKLNGTSMAAPHVAAIASLILSINPSLSYE 580
Query: 589 AI----RSALMTTAWMKN 602
+ + +++ +KN
Sbjct: 581 EVIRILKESIVQLPSLKN 598
|
Length = 639 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 38/124 (30%), Positives = 46/124 (37%), Gaps = 22/124 (17%)
Query: 240 AFGGFAEGTA-----SGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 294
GG EG A AP A LA + AG E D AAI G
Sbjct: 44 GSGGGDEGRAMLEIIHDIAPGAELAFH-----------TAGGG--ELDFAAAIRALAAAG 90
Query: 295 VHVLSISIGTNQPFAFNRDGIAIGALNAV--KHNILVACSAGNSGPAPSSLS-NLAPWLI 351
++ IG F +DG A++ V +L SAGN G + S AP I
Sbjct: 91 ADIIVDDIGYLNEPFF-QDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAI 149
Query: 352 TVGA 355
VGA
Sbjct: 150 AVGA 153
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.83 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.69 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.31 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.3 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.86 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.85 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.83 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.82 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.73 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.71 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.69 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.67 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.66 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.62 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.62 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.61 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.59 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.56 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.54 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.54 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.45 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.41 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.2 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.19 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 97.59 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.04 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 97.04 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.53 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.37 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.24 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 95.55 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 95.38 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 95.25 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 94.98 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.84 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 94.56 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 91.6 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 89.19 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 85.47 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=449.56 Aligned_cols=307 Identities=56% Similarity=0.930 Sum_probs=256.6
Q ss_pred ccccccCCccccccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccC
Q 004077 103 YSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 182 (775)
Q Consensus 103 ~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~ 182 (775)
++|+++++++++|+... |. ..+|..+++|+||+|||||||||++||+|++....+++..|.+.|..+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~ 71 (307)
T cd04852 1 YQLHTTRSPDFLGLPGA----WG-----GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFN 71 (307)
T ss_pred CCccccCCHHHcCCCCC----CC-----cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcC
Confidence 46889999999999865 11 0367789999999999999999999999999988899999999999988887
Q ss_pred cccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEE
Q 004077 183 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYK 262 (775)
Q Consensus 183 ~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~k 262 (775)
...|++|+++.++|.+++..... .....+..++.|..||||||||||||+...+.... +...+.+.||||+|+|+.+|
T Consensus 72 ~~~~~~ki~g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~-~~~~~~~~GvAP~a~l~~~k 149 (307)
T cd04852 72 PFSCNNKLIGARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVG-GFAFGTASGVAPRARIAVYK 149 (307)
T ss_pred ccCcCCeEEEEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCccccccc-ccccccEEEECCCCeEEEEE
Confidence 77899999999999887554322 12233456788999999999999999876654444 55566789999999999999
Q ss_pred eecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC
Q 004077 263 ACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS 342 (775)
Q Consensus 263 v~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~ 342 (775)
+++.. + .+..+++++||++|++++++|||||||.... ....+.+..++..+.++|++||+||||+|+...+
T Consensus 150 v~~~~--~------~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~ 220 (307)
T cd04852 150 VCWPD--G------GCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGAST 220 (307)
T ss_pred EecCC--C------CccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCc
Confidence 99874 2 4789999999999999999999999998432 4556778888889999999999999999988777
Q ss_pred CCCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceece
Q 004077 343 LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGK 422 (775)
Q Consensus 343 ~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gk 422 (775)
..+..||+++|||++
T Consensus 221 ~~~~~~~vi~Vga~~----------------------------------------------------------------- 235 (307)
T cd04852 221 VPNVAPWVTTVAAST----------------------------------------------------------------- 235 (307)
T ss_pred ccCCCCCeEEEEecc-----------------------------------------------------------------
Confidence 888889999999721
Q ss_pred EEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEee
Q 004077 423 IVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLH 502 (775)
Q Consensus 423 ivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~ 502 (775)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC
Q 004077 503 TQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH 582 (775)
Q Consensus 503 ~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 582 (775)
+||||+|||.+|++++..... .........|..++|||||||+|||++|||+|++
T Consensus 236 ----------------------~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~ 290 (307)
T cd04852 236 ----------------------LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAH 290 (307)
T ss_pred ----------------------CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHC
Confidence 477999999999999874211 1112233689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhccc
Q 004077 583 PDWSSAAIRSALMTTAW 599 (775)
Q Consensus 583 P~~s~~~ik~~L~~TA~ 599 (775)
|.|+|++||++|++||+
T Consensus 291 p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 291 PDWSPAAIKSALMTTAY 307 (307)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=452.69 Aligned_cols=293 Identities=20% Similarity=0.186 Sum_probs=211.1
Q ss_pred cccc--cCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCccccccee---eeeeecccccccccCC
Q 004077 132 DLLS--KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKI---IGARYYLKGFEQLYGP 206 (775)
Q Consensus 132 ~~~~--~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~ki---ig~~~~~~~~~~~~~~ 206 (775)
++|. .+.+|+||+|||||||||++||||.+.-... +....|.. .++ .+++.. +.+++|.++
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd----giD--dD~nG~vdd~~G~nfVd~------- 370 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK----GID--DDNNGNVDDEYGANFVNN------- 370 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc----ccc--cccCCcccccccccccCC-------
Confidence 5555 3678999999999999999999998541000 00000100 000 001111 122333321
Q ss_pred CCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004077 207 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286 (775)
Q Consensus 207 ~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~a 286 (775)
...|.|+.||||||||||||... ....+.||||+|+|+++|+++.. | .+..+++++|
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gn---------N~~Gi~GVAP~AkLi~vKVld~~--G------~G~~sdI~~A 427 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGN---------NNIGIVGVDKRSKLIICKALDSH--K------LGRLGDMFKC 427 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhcccc---------CCCceeeeecccccceEEEecCC--C------CccHHHHHHH
Confidence 23568899999999999999732 22346799999999999999876 4 4688999999
Q ss_pred HHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC--------------CCC----CCC
Q 004077 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------LSN----LAP 348 (775)
Q Consensus 287 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p 348 (775)
|+||++.|++|||||||+. .....+..++.+|.++|++||+||||+|+.... ++. ..|
T Consensus 428 I~yA~~~GA~VINmSlG~~----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 428 FDYCISREAHMINGSFSFD----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHHHCCCCEEEeccccC----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 9999999999999999983 234567788899999999999999999864221 111 135
Q ss_pred ceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEec
Q 004077 349 WLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMR 428 (775)
Q Consensus 349 ~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 428 (775)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 6777777532110
Q ss_pred CCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCc
Q 004077 429 GSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPF 508 (775)
Q Consensus 429 g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 508 (775)
....
T Consensus 517 ----------------------------------------------------------------------------~~~s 520 (639)
T PTZ00262 517 ----------------------------------------------------------------------------NQYS 520 (639)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 0112
Q ss_pred cccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHH
Q 004077 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSA 588 (775)
Q Consensus 509 ~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~ 588 (775)
++.||++|.. ++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+++++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456666532 34999999999999987 689999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeec
Q 004077 589 AIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDA 640 (775)
Q Consensus 589 ~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~ 640 (775)
+|+++|++||.+++... ....| +|+||+++|++.++.+..
T Consensus 581 qV~~iL~~TA~~l~~~~-----------n~~~w-gG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 581 EVIRILKESIVQLPSLK-----------NKVKW-GGYLDIHHAVNLAIASKH 620 (639)
T ss_pred HHHHHHHHhCccCCCCC-----------Ccccc-CcEEcHHHHHHHHHhccc
Confidence 99999999998764320 12223 389999999997775433
|
|
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=446.47 Aligned_cols=411 Identities=24% Similarity=0.229 Sum_probs=244.7
Q ss_pred CCCCceEEEEeecCCCCCCCCCCC-CCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004077 138 RYGQDVIVGLVDNGVWPESKSFSD-EGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 216 (775)
Q Consensus 138 ~~G~GV~VgVIDtGid~~Hp~f~d-~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 216 (775)
++|+||+|||||||||+.||+|++ ++.+++...|++....+.. .....+...+.............+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999985 5678899999887654321 111222222222100000000011223456
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCcc--CCCCCCHHHHHHHHHHHHhC-
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA--AGNTCFEADMLAAIDDAIRD- 293 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~--~~~~~~~~~i~~ai~~a~~~- 293 (775)
.|..||||||||||||+.. ....+.||||+|+|+++|++........+ ....+..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~---------~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGD---------NNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCchHHHHHHHhcCCC---------CCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 7899999999999999843 23446799999999999999876210000 00125788999999999874
Q ss_pred ----CceEEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCCCCCCC---C---C-ceEEecccccccc
Q 004077 294 ----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPSSLSNL---A---P-WLITVGAGSLDRD 361 (775)
Q Consensus 294 ----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~---~---p-~vitVgAs~~~~~ 361 (775)
.++|||||||...+.+...++++.+++.+..+ |++||+||||+|....+.... . . --+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 57899999999767778889999999988776 999999999999753333221 0 0 113333211 11
Q ss_pred cccceEeCCCcEEe-------eeeeccCCC----CcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCC
Q 004077 362 FVGPVVLGTGMEII-------GKTVTPYNL----KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430 (775)
Q Consensus 362 ~~~~~~~~~~~~~~-------g~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 430 (775)
+..++....-..+. |+....... ...+.+++. ..++.+..+..
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~--------------------------~t~i~v~y~~~ 277 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE--------------------------GTTVYVYYYLP 277 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC--------------------------CeEEEEEEcCC
Confidence 11111110000000 000000000 000011100 11111111110
Q ss_pred cc------hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEe----ceEE
Q 004077 431 GF------KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ----ARTV 500 (775)
Q Consensus 431 ~~------~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~----~~~~ 500 (775)
.. ...+.. -...|..-+.++.... .......|+|...+...+.. ++......+.++.. ..++
T Consensus 278 ~~~~g~~~i~i~~~-~~~~GiW~i~~~~~~~---~~g~~~~Wlp~~~~~~~~t~----f~~~~~~~tit~Pa~~~~vitV 349 (455)
T cd07478 278 EPYTGDQLIFIRFK-NIKPGIWKIRLTGVSI---TDGRFDAWLPSRGLLSENTR----FLEPDPYTTLTIPGTARSVITV 349 (455)
T ss_pred CCCCCCeEEEEEcc-CCCccceEEEEEeccC---CCceEEEEecCcCcCCCCCE----eecCCCCceEecCCCCCCcEEE
Confidence 00 000011 1222333333333211 01112334554333322221 12222222332221 1122
Q ss_pred eecC-CCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHH
Q 004077 501 LHTQ-PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLK 579 (775)
Q Consensus 501 ~~~~-~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 579 (775)
.... ..+.++.||||||+. ++++||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 350 ga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~ 414 (455)
T cd07478 350 GAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLL 414 (455)
T ss_pred EEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHH
Confidence 2222 245699999999998 699999999999999999986 789999999999999999999999
Q ss_pred HhC------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCcccee
Q 004077 580 AIH------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 624 (775)
Q Consensus 580 q~~------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 624 (775)
|++ |.+++++||++|++||++... ..+++++||||
T Consensus 415 ~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 415 QWGIVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HhchhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 985 557999999999999998752 34688999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=410.50 Aligned_cols=244 Identities=27% Similarity=0.332 Sum_probs=198.4
Q ss_pred cccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCC
Q 004077 134 LSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDD 213 (775)
Q Consensus 134 ~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 213 (775)
|.++++|+||+|||||||||.+||+|.+.. ...+|.. .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 888999999999999999999999996310 0011111 1
Q ss_pred CCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC
Q 004077 214 RSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD 293 (775)
Q Consensus 214 ~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~ 293 (775)
....|..||||||||||+|+.. .+.||||+|+|+.+|++.+. + ....+.++++|+||+++
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~------------~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~a~~~a~~~ 98 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE------------QCLGFAPDAEIYIFRVFTNN--Q------VSYTSWFLDAFNYAILT 98 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC------------CceeECCCCEEEEEEeecCC--C------CchHHHHHHHHHhhhhc
Confidence 2345778999999999998731 24699999999999999876 3 35678899999999999
Q ss_pred CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC--CCCCceEEecccccccccccceEeCCC
Q 004077 294 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--NLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+++|||||||... +...++..++.++.++|++||+||||+|+...+.. ...+++|+|||++.
T Consensus 99 ~~~Vin~S~G~~~---~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~------------- 162 (255)
T cd07479 99 KIDVLNLSIGGPD---FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF------------- 162 (255)
T ss_pred CCCEEEeeccCCC---CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc-------------
Confidence 9999999999832 33456767778888999999999999997655443 34578999998532
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCCCC
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKP 527 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~d~~~KP 527 (775)
.+.++.|||+|++.. ..+++||
T Consensus 163 ------------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~ 188 (255)
T cd07479 163 ------------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKP 188 (255)
T ss_pred ------------------------------------------------------CCccccccCCCCCcccccCCCCCcCc
Confidence 246789999996531 2478899
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC----CCCHHHHHHHHHhcccccC
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP----DWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~s~~~ik~~L~~TA~~~~ 602 (775)
||.|||.+|+++... +.|..++|||||||||||++|||+|++| .++|++||++|++||++++
T Consensus 189 di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 189 DIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred cEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999999999988765 6788999999999999999999999998 7899999999999999864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=410.99 Aligned_cols=271 Identities=26% Similarity=0.220 Sum_probs=202.5
Q ss_pred CCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCC
Q 004077 137 ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSP 216 (775)
Q Consensus 137 ~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~ 216 (775)
+++|+||+|||||||||..||+|.+-..+ ++.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------------~l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------------DLPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------------CCCcceeeccc-------------cCCC
Confidence 57999999999999999999865322111 11111111110 1234
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 296 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 296 (775)
.|..||||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++
T Consensus 45 ~d~~gHGT~vAgii~-------------------GvAP~a~l~~~~~~-------------~~~~~i~~ai~~a~~~g~~ 92 (275)
T cd05562 45 SGGGDEGRAMLEIIH-------------------DIAPGAELAFHTAG-------------GGELDFAAAIRALAAAGAD 92 (275)
T ss_pred CCCCchHHHHHHHHh-------------------ccCCCCEEEEEecC-------------CCHHHHHHHHHHHHHcCCC
Confidence 578899999999994 89999999998862 3578999999999999999
Q ss_pred EEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCC-CCCCCCCceEEecccccccccccceEeCCCcEE
Q 004077 297 VLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEI 374 (775)
Q Consensus 297 VIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~ 374 (775)
|||||||......+.+..+..+++++.++ |++||+||||+|+... ..+...|++|+|||++.+.........+
T Consensus 93 Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----- 167 (275)
T cd05562 93 IIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----- 167 (275)
T ss_pred EEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----
Confidence 99999998432223345678888888887 9999999999997533 2344669999999976543210000000
Q ss_pred eeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCC
Q 004077 375 IGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 454 (775)
Q Consensus 375 ~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 454 (775)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCC
Q 004077 455 ANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGL 534 (775)
Q Consensus 455 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~ 534 (775)
........+.|+++||+. ++++||||+|||.
T Consensus 168 -----------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg 198 (275)
T cd05562 168 -----------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDG 198 (275)
T ss_pred -----------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCc
Confidence 000012345678899987 5889999999975
Q ss_pred -cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004077 535 -NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADG 613 (775)
Q Consensus 535 -~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 613 (775)
++.++... +.|..++|||||||||||++|||+|++|+|++++||++|++||+++...
T Consensus 199 ~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~--------- 256 (275)
T cd05562 199 VNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP--------- 256 (275)
T ss_pred ccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC---------
Confidence 44554443 6899999999999999999999999999999999999999999987532
Q ss_pred CCCCCCccceeccCccccCC
Q 004077 614 SIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 614 ~~~~~~~~G~G~vn~~~Al~ 633 (775)
..+..||||+||+.+|++
T Consensus 257 --g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 257 --GYDNASGSGLVDADRAVA 274 (275)
T ss_pred --CCCCCcCcCcccHHHHhh
Confidence 356789999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=416.41 Aligned_cols=288 Identities=26% Similarity=0.246 Sum_probs=190.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|||||||||++||+|.+... ..|.- .| .+..++..+.++..+ ....+.|+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~------~~---d~~~~~~~g~d~~~~------------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKL------KF---DYKAYLLPGMDKWGG------------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCccc------cc---CcCCCccCCcCCCCC------------ccCCCCCc
Confidence 8999999999999999999964321 00100 00 000111111211111 11246789
Q ss_pred CCccccchhhhcccCCCCCCccCCc-CCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHH-------HHHHH-
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGF-AEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLA-------AIDDA- 290 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~-~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~-------ai~~a- 290 (775)
.||||||||||||+.....+.+ ++ ....+.||||+|+|+.+|+|... + .+....+.. +++|+
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~-~~~~~~g~~GVAP~A~l~~vkvl~~~--~------~~~~~~~~~g~~~~~~~~~~~~ 126 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLY-GYTGKFLIRGIAPDAKIAAVKALWFG--D------VIYAWLWTAGFDPVDRKLSWIY 126 (311)
T ss_pred cccchhHHHHHhccCccccccc-ccccccceeeeCCCCEEEEEEEEecC--C------cchhhhhhhccchhhhhhhhhh
Confidence 9999999999999853322111 11 12357899999999999999754 2 122333333 34444
Q ss_pred -HhCCceEEEEccCCCCCC----CCCccHHHHHHHHH-HcCCcEEEEecCCCCCCCCCCCC--CCCceEEeccccccccc
Q 004077 291 -IRDGVHVLSISIGTNQPF----AFNRDGIAIGALNA-VKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDF 362 (775)
Q Consensus 291 -~~~gvdVIn~SlG~~~~~----~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgAs~~~~~~ 362 (775)
.+++++|||||||..... ....+..+...+.+ .++|++||+||||+|+...+... .++++|+|||++.....
T Consensus 127 ~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~ 206 (311)
T cd07497 127 TGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYR 206 (311)
T ss_pred ccCCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCccc
Confidence 367999999999983221 11123333333432 48999999999999986555444 55899999997642210
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
+... +.
T Consensus 207 ~~~~-----------------------~~--------------------------------------------------- 212 (311)
T cd07497 207 PFYL-----------------------FG--------------------------------------------------- 212 (311)
T ss_pred chhh-----------------------hc---------------------------------------------------
Confidence 0000 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
......+.++.||||||+. +
T Consensus 213 ----------------------------------------------------------~~~~~~~~~~~fSs~Gp~~--~ 232 (311)
T cd07497 213 ----------------------------------------------------------YLPGGSGDVVSWSSRGPSI--A 232 (311)
T ss_pred ----------------------------------------------------------cccCCCCCccccccCCCCc--c
Confidence 0001145789999999998 5
Q ss_pred CCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC------CCCHHHHHHHHHh
Q 004077 523 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP------DWSSAAIRSALMT 596 (775)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~s~~~ik~~L~~ 596 (775)
+++||||+|||++|+++.+....... ......|..++|||||||||||++|||+|++| .++|++||++|++
T Consensus 233 g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~ 309 (311)
T cd07497 233 GDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMS 309 (311)
T ss_pred cCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHh
Confidence 99999999999999998765321000 01124799999999999999999999999986 5899999999999
Q ss_pred cc
Q 004077 597 TA 598 (775)
Q Consensus 597 TA 598 (775)
||
T Consensus 310 tA 311 (311)
T cd07497 310 TA 311 (311)
T ss_pred cC
Confidence 97
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=421.61 Aligned_cols=315 Identities=29% Similarity=0.363 Sum_probs=234.5
Q ss_pred ccccCC-CCCceEEEEeecCCCCCCCCCCCCCCCCCCC-----CccceeecCCccCcccccceeeeeeecccccccccCC
Q 004077 133 LLSKAR-YGQDVIVGLVDNGVWPESKSFSDEGMGPVPK-----SWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGP 206 (775)
Q Consensus 133 ~~~~~~-~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~-----~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~ 206 (775)
+|+++. +|+||+|||||||||++||+|++....+... .+...+..+ ...+++.+++.+++|.++...
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999998654322110 111111111 122456778888888765221
Q ss_pred CCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHH
Q 004077 207 LNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286 (775)
Q Consensus 207 ~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~a 286 (775)
.....|..+|||||||||+|...+.. ....+.||||+|+|+.+|++.....+ .+....+++|
T Consensus 75 ------~~~~~~~~~HGT~vagiiag~~~~~~------~~~~~~GiAp~a~l~~~~v~~~~~~~------~~~~~~~~~a 136 (346)
T cd07475 75 ------ILDEDDGSSHGMHVAGIVAGNGDEED------NGEGIKGVAPEAQLLAMKVFSNPEGG------STYDDAYAKA 136 (346)
T ss_pred ------cCCCCCCCCcHHHHHHHHhcCCCccc------cCCceEEeCCCCeEEEEEeecCCCCC------CCCHHHHHHH
Confidence 11245788999999999999843211 12356899999999999999741112 4788899999
Q ss_pred HHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC----------------CCCCce
Q 004077 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS----------------NLAPWL 350 (775)
Q Consensus 287 i~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~~p~v 350 (775)
++++++.|++|||||||...........+..++.++.++|++||+||||+|....... ...+++
T Consensus 137 i~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 137 IEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 9999999999999999995443355567788888999999999999999985432211 123556
Q ss_pred EEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCC
Q 004077 351 ITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430 (775)
Q Consensus 351 itVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 430 (775)
|+||+++...
T Consensus 217 i~Vga~~~~~---------------------------------------------------------------------- 226 (346)
T cd07475 217 LTVASANKKV---------------------------------------------------------------------- 226 (346)
T ss_pred eEEeeccccc----------------------------------------------------------------------
Confidence 6666543100
Q ss_pred cchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc
Q 004077 431 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 510 (775)
Q Consensus 431 ~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 510 (775)
.....+.++
T Consensus 227 -----------------------------------------------------------------------~~~~~~~~~ 235 (346)
T cd07475 227 -----------------------------------------------------------------------PNPNGGQMS 235 (346)
T ss_pred -----------------------------------------------------------------------CCCCCCccC
Confidence 011245788
Q ss_pred cccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCC
Q 004077 511 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWS 586 (775)
Q Consensus 511 ~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s 586 (775)
.||+|||+. +.++||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|+
T Consensus 236 ~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~ 300 (346)
T cd07475 236 GFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLS 300 (346)
T ss_pred CCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999999998 589999999999999999876 68999999999999999999999998 78999
Q ss_pred HHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCC
Q 004077 587 SAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 587 ~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
+.+ ||.+|++||.+.... ...+.++.+.++|+|+||+.+||+
T Consensus 301 ~~~~~~~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 301 GEELVDLVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 876 788899999853211 123456788899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=405.95 Aligned_cols=295 Identities=30% Similarity=0.340 Sum_probs=228.4
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||+|||++||+|.+.-.. +.++.+.++|..+.... .+...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~---~~~~~ 59 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDG---TNPPV 59 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCccccc---ccCCC
Confidence 7899999999999999999999999999753110 11233333443221110 01112
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+...+.|..||||||||||+|...+ ..+.||||+|+|+.+|++... + ....+.+++++++|+
T Consensus 60 ~~~~~~d~~gHGT~vAgiia~~~~~----------~~~~GiAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (312)
T cd07489 60 PDDDPMDCQGHGTHVAGIIAANPNA----------YGFTGVAPEATLGAYRVFGCS--G------STTEDTIIAAFLRAY 121 (312)
T ss_pred CCCCCCCCCCcHHHHHHHHhcCCCC----------CceEEECCCCEEEEEEeecCC--C------CCCHHHHHHHHHHHH
Confidence 2345677899999999999997422 346799999999999999865 3 467888999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEe
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+++++|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 122 ~~~~~iIn~S~g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 122 EDGADVITASLGGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred hcCCCEEEeCCCcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 999999999999832 344577878888899999999999999986532 2233457888888631
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
+.||+|||+. +...|||
T Consensus 189 -------------------------------------------------------------~~~s~~g~~~--~~~~kpd 205 (312)
T cd07489 189 -------------------------------------------------------------SYFSSWGPTN--ELYLKPD 205 (312)
T ss_pred -------------------------------------------------------------CCccCCCCCC--CCCcCcc
Confidence 4689999987 4889999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCc
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-PDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
|+|||++|+++++... +.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.+....+..
T Consensus 206 v~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~ 274 (312)
T cd07489 206 VAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGT 274 (312)
T ss_pred EEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCC
Confidence 9999999999987622 358999999999999999999999999 9999999999999999987654211
Q ss_pred ccCCCCCCCCCCccceeccCccccCCCCee
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAADPGLV 637 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 637 (775)
- .....+++.++|+|+||+.+|++..-.
T Consensus 275 ~--~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 275 S--ALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred c--cccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 0 001146778999999999999996443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=392.13 Aligned_cols=250 Identities=27% Similarity=0.304 Sum_probs=203.5
Q ss_pred ccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCC
Q 004077 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 212 (775)
Q Consensus 133 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 212 (775)
+|..+++|+||+|||||+|||++||+|++..+.+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999975422110 00000 0
Q ss_pred CCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004077 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292 (775)
Q Consensus 213 ~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 292 (775)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++.....+ ++..++++||+||++
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~-----------~~~~GvAp~a~i~~~~v~~~~~~~-------~~~~~i~~ai~~a~~ 104 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC-----------SSVEGIAPLCRGLNIPIFAEDRRG-------CSQLDLARAINLALE 104 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC-----------CCceeECcCCeEEEEEEEeCCCCC-------CCHHHHHHHHHHHHH
Confidence 12345678999999999998731 135799999999999999865322 457899999999999
Q ss_pred CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCc
Q 004077 293 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 293 ~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
+|++|||||||...........+..+++.+.++|++||+||||+|.....++...|++|+|||++.
T Consensus 105 ~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~-------------- 170 (267)
T cd07476 105 QGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD-------------- 170 (267)
T ss_pred CCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC--------------
Confidence 999999999998433334456678888899999999999999999776666667799999998542
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.+.++.||+||+.. .||||+||
T Consensus 171 -----------------------------------------------------~~~~~~~s~~g~~~-----~~~~l~Ap 192 (267)
T cd07476 171 -----------------------------------------------------DGLPLKFSNWGADY-----RKKGILAP 192 (267)
T ss_pred -----------------------------------------------------CCCeeeecCCCCCC-----CCceEEec
Confidence 12456899999854 38899999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC----CCHHHHHHHHHhcccccCCC
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD----WSSAAIRSALMTTAWMKNNK 604 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~s~~~ik~~L~~TA~~~~~~ 604 (775)
|.+|+++.+. +.|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 193 G~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 193 GENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred CCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 9999999876 68999999999999999999999999887 89999999999999998643
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=389.95 Aligned_cols=290 Identities=37% Similarity=0.504 Sum_probs=217.6
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCC-C-CCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPL-N-ATEDDRSPR 217 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~-~-~~~~~~~~~ 217 (775)
|+||+|||||+|||++||+|.+.. ..+.++...++|........... . .........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999997532 12334445555543211110000 0 000112245
Q ss_pred CCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004077 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 297 (775)
Q Consensus 218 D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 297 (775)
|..+|||||||+|+|+..+ ...+.||||+|+|+.+|++... + .+...+++++|+|+++++++|
T Consensus 60 ~~~~HGT~vAgiiag~~~n---------~~~~~Giap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~I 122 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN---------VGTIKGVAPKADLYAYKVLGPG--G------SGTTDVIIAAIEQAVDDGMDV 122 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc---------cCceEeECCCCeEEEEEeecCC--C------CCCHHHHHHHHHHHHHcCCCE
Confidence 6889999999999987432 3346799999999999999854 3 478899999999999999999
Q ss_pred EEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccccccceEeCCCcEEe
Q 004077 298 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 375 (775)
Q Consensus 298 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~ 375 (775)
||||||... ....+.+..+++++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 123 in~S~g~~~--~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------- 186 (295)
T cd07474 123 INLSLGSSV--NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------- 186 (295)
T ss_pred EEeCCCCCC--CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------
Confidence 999999832 22457788888999999999999999998765544 335689999998541100
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 376 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 376 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCC-CCCCCCCCCCCceeeCCC
Q 004077 456 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRG-PNALDPYILKPDITAPGL 534 (775)
Q Consensus 456 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-P~~~~d~~~KPDI~APG~ 534 (775)
........|+++| ++. +..+||||+|||+
T Consensus 187 ------------------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~ 216 (295)
T cd07474 187 ------------------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGV 216 (295)
T ss_pred ------------------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcC
Confidence 0012334455554 544 5889999999999
Q ss_pred cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCC
Q 004077 535 NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGS 614 (775)
Q Consensus 535 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~ 614 (775)
+|++++... ...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. .
T Consensus 217 ~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~ 278 (295)
T cd07474 217 DIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------V 278 (295)
T ss_pred ceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------C
Confidence 999998763 1578999999999999999999999999999999999999999998765421 2
Q ss_pred CCCCCccceeccCcccc
Q 004077 615 IATPFSFGSGHFRPTKA 631 (775)
Q Consensus 615 ~~~~~~~G~G~vn~~~A 631 (775)
.+++..+|+|+||+.+|
T Consensus 279 ~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 279 VYPVSRQGAGRVDALRA 295 (295)
T ss_pred cCChhccCcceeccccC
Confidence 23567899999999887
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=389.80 Aligned_cols=262 Identities=24% Similarity=0.342 Sum_probs=188.6
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccceee--------cCCccCcccccceeeeeeecccccccc----cCCCC
Q 004077 141 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQ--------TGVAFNSSLCNKKIIGARYYLKGFEQL----YGPLN 208 (775)
Q Consensus 141 ~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~--------~g~~~~~~~~n~kiig~~~~~~~~~~~----~~~~~ 208 (775)
|+|+|||||||||++||+|++. .|....+ .+.+|- .-+++++|...+... ..+.+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~------dd~~g~~f~~~~~~~~~~~~~~~~ 67 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYI------DDVNGWNFLGQYDPRRIVGDDPYD 67 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCcc------ccccCeeccCCcccccccccCccc
Confidence 6899999999999999999864 2322111 111110 012344443321100 00000
Q ss_pred ------CCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHH
Q 004077 209 ------ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEAD 282 (775)
Q Consensus 209 ------~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~ 282 (775)
...+...+.+..||||||||||+|...+ ...+.||||+|+|+.+|++... .....+
T Consensus 68 ~~~~~~g~~~~~~~~~~~gHGT~VAGiIaa~~~n---------~~g~~GvAp~a~i~~~k~~~~g---------~~~~~~ 129 (291)
T cd07483 68 LTEKGYGNNDVNGPISDADHGTHVAGIIAAVRDN---------GIGIDGVADNVKIMPLRIVPNG---------DERDKD 129 (291)
T ss_pred cccccccccccCCCCCCCCcHHHHHHHHhCcCCC---------CCceEEECCCCEEEEEEEecCC---------CcCHHH
Confidence 0112234557899999999999987432 1236799999999999998643 356788
Q ss_pred HHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC-----------CCCCCceE
Q 004077 283 MLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-----------SNLAPWLI 351 (775)
Q Consensus 283 i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~~p~vi 351 (775)
+++||+||++.|++|||||||... ......+..++..+.++|+++|+||||+|.+.... ....+++|
T Consensus 130 i~~Ai~~a~~~g~~IiN~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi 207 (291)
T cd07483 130 IANAIRYAVDNGAKVINMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFI 207 (291)
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCee
Confidence 999999999999999999999721 12234567777889999999999999998542211 11235677
Q ss_pred EecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCc
Q 004077 352 TVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG 431 (775)
Q Consensus 352 tVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 431 (775)
+|||++...
T Consensus 208 ~Vga~~~~~----------------------------------------------------------------------- 216 (291)
T cd07483 208 TVGASSKKY----------------------------------------------------------------------- 216 (291)
T ss_pred EEeeccccC-----------------------------------------------------------------------
Confidence 777643211
Q ss_pred chhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc
Q 004077 432 FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN 511 (775)
Q Consensus 432 ~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 511 (775)
....++.
T Consensus 217 -------------------------------------------------------------------------~~~~~~~ 223 (291)
T cd07483 217 -------------------------------------------------------------------------ENNLVAN 223 (291)
T ss_pred -------------------------------------------------------------------------Ccccccc
Confidence 0125778
Q ss_pred ccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHH
Q 004077 512 FTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIR 591 (775)
Q Consensus 512 fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik 591 (775)
||++|+. +|||.|||.+|+++.+. +.|..++|||||||||||++|||+|++|.|+++|||
T Consensus 224 ~Sn~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~ 283 (291)
T cd07483 224 FSNYGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVK 283 (291)
T ss_pred cCCCCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999974 34999999999999876 689999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 004077 592 SALMTTAW 599 (775)
Q Consensus 592 ~~L~~TA~ 599 (775)
++|++||.
T Consensus 284 ~~L~~ta~ 291 (291)
T cd07483 284 QIILESGV 291 (291)
T ss_pred HHHHHhCC
Confidence 99999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=379.03 Aligned_cols=238 Identities=27% Similarity=0.316 Sum_probs=191.8
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 143 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 143 V~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
|+|||||||||++||+|++.. +..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC---------------CCCCCCCCC
Confidence 689999999999999996431 11111111 134567899
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEcc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 302 (775)
||||||||+|+... . .||||+|+|+.+|++.....+ ..++..++++||+||++.|++||||||
T Consensus 39 GT~vAgiia~~~~~---------~---~Gvap~a~i~~~~v~~~~~~~-----~~~~~~~i~~ai~~a~~~g~~VIn~S~ 101 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R---PGLLPGADLYGADVFGRAGGG-----EGASALALARALDWLAEQGVRVVNISL 101 (239)
T ss_pred HHHHHHHHhCCCCC---------C---cccCCCCEEEEEEEecCCCCC-----CCcCHHHHHHHHHHHHHCCCCEEEeCC
Confidence 99999999987321 1 599999999999999864211 136788999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 303 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 303 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
|.. ....+..+++++.++|++||+||||+|+.. ..++...+++|+|++++.
T Consensus 102 g~~-----~~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~----------------------- 153 (239)
T cd05561 102 AGP-----PNALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA----------------------- 153 (239)
T ss_pred CCC-----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC-----------------------
Confidence 972 235677788899999999999999999653 344555688999997542
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.+.++.||++|+.. ||+|||.+|+++.+
T Consensus 154 --------------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~ 181 (239)
T cd05561 154 --------------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAP 181 (239)
T ss_pred --------------------------------------------CCCccccCCCCCcc--------eEEccccceecccC
Confidence 23567899999976 99999999999876
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCcc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSF 621 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 621 (775)
. +.|..++|||||||||||++|||+|++| +++++||++|++||+++... ..+..|
T Consensus 182 ~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~ 236 (239)
T cd05561 182 G-------------GGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVF 236 (239)
T ss_pred C-------------CCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCc
Confidence 5 6899999999999999999999999999 99999999999999977543 356778
Q ss_pred cee
Q 004077 622 GSG 624 (775)
Q Consensus 622 G~G 624 (775)
|||
T Consensus 237 G~G 239 (239)
T cd05561 237 GYG 239 (239)
T ss_pred CCC
Confidence 987
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=391.03 Aligned_cols=223 Identities=26% Similarity=0.274 Sum_probs=167.0
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCce
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH 296 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvd 296 (775)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++... + ..+....+++||++|++.|++
T Consensus 182 ~d~~gHGThVAGIIAg~~~~---------~~~~~GVAP~A~I~svkv~d~~~-g-----s~~t~~~l~~ai~~ai~~gad 246 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE---------EPERNGVAPGAQIVSIKIGDTRL-G-----SMETGTALVRAMIAAIETKCD 246 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC---------CCceEEecCCCeEEEEEeccCCC-C-----CccchHHHHHHHHHHHHcCCC
Confidence 46789999999999998322 23467999999999999986542 2 013446799999999999999
Q ss_pred EEEEccCCCCCCCCCccHHHHHHHH-HHcCCcEEEEecCCCCCCCCCCCCC---CCceEEecccccccccccceEeCCCc
Q 004077 297 VLSISIGTNQPFAFNRDGIAIGALN-AVKHNILVACSAGNSGPAPSSLSNL---APWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 297 VIn~SlG~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
|||||||....... ...+..++.+ +.++|++||+||||+|+...++..+ .+++|+|||+.....+.....+
T Consensus 247 VIN~SlG~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~---- 321 (412)
T cd04857 247 LINMSYGEATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL---- 321 (412)
T ss_pred EEEecCCcCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc----
Confidence 99999998432111 1233334443 4578999999999999887766543 5799999996432211000000
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.....+.++.||||||+. |+.+||||+||
T Consensus 322 -------------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~AP 350 (412)
T cd04857 322 -------------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAP 350 (412)
T ss_pred -------------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeC
Confidence 001135788999999998 79999999999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhccccc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMK 601 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~ 601 (775)
|+.|.+.-... ...|..|+|||||||||||++|||++ .+|.|+|.+||++|++||+++
T Consensus 351 G~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 351 GGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 99998852211 15789999999999999999999985 478999999999999999863
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=379.48 Aligned_cols=247 Identities=29% Similarity=0.345 Sum_probs=196.3
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+||||||||+++||+|.... ..++.++.+.++|.++.. ....|..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999994221 012346677777765411 11367889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||+|+. .+.+.||||+|+|+.+|+.....+. ......++.|++|+.+.+++|||||
T Consensus 49 HGT~vagiia~~~-----------~~~~~GvAp~a~l~~~~~~~~~~~~------~~~~~~~~~ai~~a~~~~v~VIn~S 111 (261)
T cd07493 49 HGTAVLSTMAGYT-----------PGVMVGTAPNASYYLARTEDVASET------PVEEDNWVAAAEWADSLGVDIISSS 111 (261)
T ss_pred chhhhheeeeeCC-----------CCCEEEeCCCCEEEEEEecccCCcc------cccHHHHHHHHHHHHHcCCCEEEeC
Confidence 9999999999873 1336899999999999987644222 2456778999999999999999999
Q ss_pred cCCCCCCCC-----------CccHHHHHHHHHHcCCcEEEEecCCCCCCC---CCCCCCCCceEEecccccccccccceE
Q 004077 302 IGTNQPFAF-----------NRDGIAIGALNAVKHNILVACSAGNSGPAP---SSLSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 302 lG~~~~~~~-----------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
||....... ....+..+++.+.++|++||+||||+|... ...+...+++|+|||.+.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (261)
T cd07493 112 LGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA--------- 182 (261)
T ss_pred CCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc---------
Confidence 998432111 123577788889999999999999999763 334445689999998532
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||+. ++++||
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~--~~~~~p 202 (261)
T cd07493 183 ----------------------------------------------------------NGNKASFSSIGPTA--DGRLKP 202 (261)
T ss_pred ----------------------------------------------------------CCCCCccCCcCCCC--CCCcCC
Confidence 23677899999987 689999
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
||+|||.+|++.... +.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 203 di~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 203 DVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999985544 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=377.19 Aligned_cols=247 Identities=30% Similarity=0.365 Sum_probs=193.0
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|||||+|||++||+|.+. |.+... ..+...+.+.+ +......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~-----------~~~~~~~~~~d----------~~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG-----------GSADHDYNWFD----------PVGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC-----------CCccccccccc----------CCCCCCCCCCC
Confidence 89999999999999999999754 111000 00000000111 01112356688
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-------
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR------- 292 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~------- 292 (775)
.+|||||||||+|.... +...||||+|+|+.+|++... + +...+++++++++++
T Consensus 52 ~~HGT~vagii~g~~~~----------~~~~GvAp~a~i~~~~~~~~~--~-------~~~~~~~~a~~~~~~~~~~~~~ 112 (264)
T cd07481 52 NGHGTHTMGTMVGNDGD----------GQQIGVAPGARWIACRALDRN--G-------GNDADYLRCAQWMLAPTDSAGN 112 (264)
T ss_pred CCchhhhhhheeecCCC----------CCceEECCCCeEEEEEeecCC--C-------CcHHHHHHHHHHHHhccccccc
Confidence 99999999999987321 123799999999999999865 3 678899999999975
Q ss_pred -----CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCceEEeccccccccccc
Q 004077 293 -----DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 293 -----~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAs~~~~~~~~ 364 (775)
.+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 113 ~~~~~~~~~Iin~S~G~~~~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------ 183 (264)
T cd07481 113 PADPDLAPDVINNSWGGPSG---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------ 183 (264)
T ss_pred ccccccCCeEEEeCCCcCCC---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC------
Confidence 789999999998322 24556667778889999999999999865433 3345689999998542
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
.+.++.||++||.. .++
T Consensus 184 -------------------------------------------------------------~~~~~~~S~~g~~~--~~~ 200 (264)
T cd07481 184 -------------------------------------------------------------NDVLADFSSRGPST--YGR 200 (264)
T ss_pred -------------------------------------------------------------CCCCccccCCCCCC--CCC
Confidence 23677999999987 489
Q ss_pred CCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 004077 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD--WSSAAIRSALMTTAW 599 (775)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~s~~~ik~~L~~TA~ 599 (775)
+||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 201 ~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 201 IKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999877 68899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-44 Score=370.30 Aligned_cols=337 Identities=23% Similarity=0.337 Sum_probs=250.2
Q ss_pred ccCCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchh------hhc------------ceEEeec---eeEeEEEE
Q 004077 20 QKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEE------ARA------------SHLYSYK---HSINGFSA 78 (775)
Q Consensus 20 ~~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~------------~i~~~y~---~~~ng~~~ 78 (775)
.....+|||.|++.. ..+....|.++++..++.... .-. .+.+.|. .+|+|+.-
T Consensus 77 ~~~~~~YiV~f~~~~-----~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~ 151 (501)
T KOG1153|consen 77 EALPSRYIVVFKPDA-----SQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTG 151 (501)
T ss_pred cccccceEEEeCCCc-----cHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccc
Confidence 455689999999665 345566788888777653221 000 1333333 26777788
Q ss_pred EcCHHHHHhhcc--ccceEEecCCCcccccc-----cCCccccccchhhhcccCcc-cccccccccCCCCCceEEEEeec
Q 004077 79 VLTPDEAARLSE--EVVSVYPSHPEKYSLQT-----TRSWEFVGLDEVAKQNWNHF-NMGQDLLSKARYGQDVIVGLVDN 150 (775)
Q Consensus 79 ~l~~~~~~~L~~--~V~~V~~~~~~~~~~~~-----~~s~~~~gl~~~~~~~~~~~-~~~~~~~~~~~~G~GV~VgVIDt 150 (775)
..+.+-+..+++ -++.++++. ...... .+....|||.++.++....+ .....+++ -..|+||...|+||
T Consensus 152 ~ft~~~v~~i~~~p~~~~ve~~~--~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 152 YFTGESVCSIRSDPLIKAVEKDS--VVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLDT 228 (501)
T ss_pred ccccceeeeeccCcceeeccccc--ccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEecc
Confidence 888887777777 666777666 433221 22223457776643321100 01112332 44899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhh
Q 004077 151 GVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTV 230 (775)
Q Consensus 151 Gid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGii 230 (775)
||+.+||+|.++. .| |..+ . ......|++||||||||+|
T Consensus 229 GVni~H~dFegRa------~w------Ga~i---------------~--------------~~~~~~D~nGHGTH~AG~I 267 (501)
T KOG1153|consen 229 GVNIEHPDFEGRA------IW------GATI---------------P--------------PKDGDEDCNGHGTHVAGLI 267 (501)
T ss_pred cccccccccccce------ec------cccc---------------C--------------CCCcccccCCCcceeeeee
Confidence 9999999998652 33 2111 0 0124568999999999999
Q ss_pred cccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---------CceEEEEc
Q 004077 231 AGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---------GVHVLSIS 301 (775)
Q Consensus 231 aG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~S 301 (775)
+++. -|||.+++|+++||++++ | ++..+++++++|++++. +..|.|||
T Consensus 268 ~sKt---------------~GvAK~s~lvaVKVl~~d--G------sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlS 324 (501)
T KOG1153|consen 268 GSKT---------------FGVAKNSNLVAVKVLRSD--G------SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLS 324 (501)
T ss_pred eccc---------------cccccccceEEEEEeccC--C------cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEe
Confidence 9982 399999999999999998 6 67999999999999985 57899999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-CCCCceEEecccccccccccceEeCCCcEEeeeeec
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 380 (775)
+|+ +..-.+..|++.|.+.||.+++||||+..+.+..+ ..+..+|||||++.
T Consensus 325 lGg-----~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~---------------------- 377 (501)
T KOG1153|consen 325 LGG-----FRSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK---------------------- 377 (501)
T ss_pred cCC-----cccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc----------------------
Confidence 999 34466888999999999999999999998765544 46689999999753
Q ss_pred cCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc
Q 004077 381 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 460 (775)
Q Consensus 381 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 460 (775)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcc
Q 004077 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 540 (775)
Q Consensus 461 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~ 540 (775)
.+.+|.||+||+++ ||.|||++|+|+|
T Consensus 378 ---------------------------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~ 404 (501)
T KOG1153|consen 378 ---------------------------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSW 404 (501)
T ss_pred ---------------------------------------------ccchhhhcCcccee--------eeecCchhhhhhh
Confidence 24889999999999 9999999999999
Q ss_pred cCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 004077 541 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD---------WSSAAIRSALMTTAW 599 (775)
Q Consensus 541 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---------~s~~~ik~~L~~TA~ 599 (775)
.+.. ..-.+.||||||+|||||++|.++.++|. .+|.++|..+..=..
T Consensus 405 iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 405 IGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 8843 46779999999999999999999999883 378888887766554
|
|
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=370.93 Aligned_cols=258 Identities=30% Similarity=0.437 Sum_probs=203.3
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
|+||+|+|||+||+++||+|.+... ..+.+.... .......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~---------------------------~~~~~~~~~----------~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII---------------------------RFADFVNTV----------NGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc---------------------------ccccccccc----------cCCCCCCCC
Confidence 8999999999999999999975421 001111000 012356677
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----Cc
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GV 295 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gv 295 (775)
.+|||||||||+|+..+. ...+.||||+|+|+.+|+++.. + ....+++++||+|+++. ++
T Consensus 44 ~~HGT~vAgiiag~~~~~--------~~~~~Giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~~~~~~~~~ 107 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS--------NGKYKGVAPGANLVGVKVLDDS--G------SGSESDIIAGIDWVVENNEKYNI 107 (264)
T ss_pred CCchHHHHHHHhcCCccc--------CCceEEECCCCeEEEEEeecCC--C------CccHHHHHHHHHHHHhhccccCc
Confidence 899999999999984321 2346899999999999999876 3 46788999999999998 99
Q ss_pred eEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC--CCCCCCCceEEecccccccccccceEeCCCcE
Q 004077 296 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--SLSNLAPWLITVGAGSLDRDFVGPVVLGTGME 373 (775)
Q Consensus 296 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~ 373 (775)
+|||||||.........+.+..+++++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 108 ~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------ 175 (264)
T cd07487 108 RVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------ 175 (264)
T ss_pred eEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------
Confidence 9999999985443556788888999999999999999999997765 33445689999998653220
Q ss_pred EeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecC
Q 004077 374 IIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNS 453 (775)
Q Consensus 374 ~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~ 453 (775)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCC
Q 004077 454 PANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPG 533 (775)
Q Consensus 454 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG 533 (775)
....++.||++||+. ++++||||+|||
T Consensus 176 ---------------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG 202 (264)
T cd07487 176 ---------------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPG 202 (264)
T ss_pred ---------------------------------------------------CCccccccccCCCCC--CCCcCCCEEccc
Confidence 012578899999998 599999999999
Q ss_pred CcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 534 LNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 534 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
.+|+++.+..... .....+.|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 203 ~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 203 ENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred cceEecccccccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999986542110 1112267899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=371.19 Aligned_cols=264 Identities=27% Similarity=0.308 Sum_probs=198.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+.... ..+ ......+.+... ...
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-------------~~~------~~~~~~~~~~~~---------~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-------------DGY------DPAVNGYNFVPN---------VGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC-------------CCc------ccccCCcccccc---------cCC
Confidence 3799999999999999999999999999865110 000 000000000000 001
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|..||||||||||+|+..+... .++.. .+.|+||+|+|+.+|++... + .+..+.++++|++++
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~-~g~i~--~~~gvap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 121 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGG-VGGIA--GAGGVAPGVKIMSIQIFAGR--Y------YVGDDAVAAAIVYAA 121 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcc-eeccc--cccccCCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1224557789999999999987432211 10111 23579999999999999875 3 478889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcC-------CcEEEEecCCCCCCCCCCCCCCCceEEeccccccccccc
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-------NILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~ 364 (775)
+.|++|||||||... ...+...+..+++.+.++ |++||+||||++......+...+++|+|++++.
T Consensus 122 ~~g~~Vin~S~g~~~-~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------ 194 (273)
T cd07485 122 DNGAVILQNSWGGTG-GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------ 194 (273)
T ss_pred HcCCcEEEecCCCCC-ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC------
Confidence 999999999999832 223445677777888887 999999999999876666666789999998542
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
.+.++.||++|+..
T Consensus 195 -------------------------------------------------------------~~~~~~~S~~g~~~----- 208 (273)
T cd07485 195 -------------------------------------------------------------NDNKASFSNYGRWV----- 208 (273)
T ss_pred -------------------------------------------------------------CCCcCccccCCCce-----
Confidence 23667899999977
Q ss_pred CCCceeeCCC-cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 004077 525 LKPDITAPGL-NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD-WSSAAIRSALMTT 597 (775)
Q Consensus 525 ~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~s~~~ik~~L~~T 597 (775)
||+|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++++|||++|++|
T Consensus 209 ---~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 209 ---DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999 99988765321 11257899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=361.79 Aligned_cols=233 Identities=31% Similarity=0.423 Sum_probs=193.4
Q ss_pred ccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCC
Q 004077 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 212 (775)
Q Consensus 133 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 212 (775)
.|..+++|+||+|||||+||+++||+|.+. +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 777899999999999999999999999643 1122222221
Q ss_pred CCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004077 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292 (775)
Q Consensus 213 ~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 292 (775)
....|..+|||||||||+|.. .||||+|+|+.+|+++.. + ....+.++++++++++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~---------------~GvAp~a~i~~~~i~~~~--~------~~~~~~~~~ai~~~~~ 112 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT---------------YGVAKKANLVAVKVLDCN--G------SGTLSGIIAGLEWVAN 112 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc---------------cCcCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHh
Confidence 125678899999999999862 499999999999999876 3 3678899999999998
Q ss_pred C-----CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccccccccccce
Q 004077 293 D-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 293 ~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~~~ 366 (775)
. +++|||||||... ...+..+++++.++|+++|+||||+|.... ..+...+++|+||+++.
T Consensus 113 ~~~~~~~~~iin~S~g~~~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~-------- 179 (255)
T cd04077 113 DATKRGKPAVANMSLGGGA-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS-------- 179 (255)
T ss_pred cccccCCCeEEEeCCCCCC-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC--------
Confidence 7 4899999999832 456777888899999999999999997653 33455689999998542
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
.+.++.||++||..
T Consensus 180 -----------------------------------------------------------~~~~~~~S~~g~~~------- 193 (255)
T cd04077 180 -----------------------------------------------------------DDARASFSNYGSCV------- 193 (255)
T ss_pred -----------------------------------------------------------CCCccCcccCCCCC-------
Confidence 23567899999987
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 004077 527 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWM 600 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~ 600 (775)
||+|||.+|.++..... ..|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 194 -~i~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 194 -DIFAPGVDILSAWIGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -cEEeCCCCeEecccCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999999999887411 689999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=372.25 Aligned_cols=268 Identities=24% Similarity=0.196 Sum_probs=187.1
Q ss_pred EEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCcc
Q 004077 144 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHG 223 (775)
Q Consensus 144 ~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHG 223 (775)
+|||||||||.+||+|.+.- .....+... .....|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~~-------------~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSDE-------------PGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhhh---------------------------ccccccccC-------------CCCcCCCCCCh
Confidence 79999999999999996421 111111110 01156889999
Q ss_pred ccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC---ceEEEE
Q 004077 224 THTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG---VHVLSI 300 (775)
Q Consensus 224 THVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g---vdVIn~ 300 (775)
|||||||++.... .....|+||+|+|+.+|++..... .+.....+++++||+|+++.+ ++||||
T Consensus 42 T~vAgiia~~~~~---------~~~~~gvap~~~l~~~kv~~~~g~----~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~ 108 (291)
T cd04847 42 TAVAGLALYGDLT---------LPGNGLPRPGCRLESVRVLPPNGE----NDPELYGDITLRAIRRAVIQNPDIVRVFNL 108 (291)
T ss_pred HHHHHHHHcCccc---------CCCCCCcccceEEEEEEEcCCCCC----CCccChHHHHHHHHHHHHHhCCCceeEEEE
Confidence 9999999875322 223469999999999999987620 011357788999999999853 599999
Q ss_pred ccCCCCCCCCC-ccHHHHHHHH-HHcCCcEEEEecCCCCCCCCCC------------CCCCCceEEecccccccccccce
Q 004077 301 SIGTNQPFAFN-RDGIAIGALN-AVKHNILVACSAGNSGPAPSSL------------SNLAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 301 SlG~~~~~~~~-~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgAs~~~~~~~~~~ 366 (775)
|||........ ...+..++++ +.++|++||+||||++...... +...+++|+|||++.+.......
T Consensus 109 SlG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 109 SLGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred ecCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 99995332211 1245555554 5689999999999999775432 23357999999976543211000
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
..
T Consensus 189 ~~------------------------------------------------------------------------------ 190 (291)
T cd04847 189 RY------------------------------------------------------------------------------ 190 (291)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
+.......+.||+|||.. ++.+|
T Consensus 191 -------------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~K 213 (291)
T cd04847 191 -------------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIK 213 (291)
T ss_pred -------------------------------------------------------cccccccCCCccccCCCC--CCCcC
Confidence 000011233499999998 69999
Q ss_pred CceeeCCCcEEEcccCCCCCC-----cccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 527 PDITAPGLNILAAWSEASSPS-----KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
|||+|||++|.+..+...... ..........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 214 PDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 214 PDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999999999988654211000 0001112368999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=360.56 Aligned_cols=240 Identities=30% Similarity=0.371 Sum_probs=200.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+ +|+||+|||||+||+++||+|... ++...+++.+.
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~------------ 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN------------ 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC------------
Confidence 788888 999999999999999999998422 22222333221
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. + .+...+++++|++++
T Consensus 61 -~~~~~d~~~HGT~vagii~~~~~~---------~~~~~Giap~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 122 (260)
T cd07484 61 -DSDAMDDNGHGTHVAGIIAAATNN---------GTGVAGVAPKAKIMPVKVLDAN--G------SGSLADIANGIRYAA 122 (260)
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCC---------CCceEeECCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 123567889999999999987322 2235799999999999999875 3 467889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+.+++|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.
T Consensus 123 ~~~~~iin~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------- 185 (260)
T cd07484 123 DKGAKVINLSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------- 185 (260)
T ss_pred HCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------
Confidence 999999999999832 445677777888999999999999999887777778899999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+..+.||++|+.. |++|
T Consensus 186 ------------------------------------------------------~~~~~~~s~~g~~~--------~~~a 203 (260)
T cd07484 186 ------------------------------------------------------DDKRASFSNYGKWV--------DVSA 203 (260)
T ss_pred ------------------------------------------------------CCCcCCcCCCCCCc--------eEEe
Confidence 23567899999876 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 601 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~ 601 (775)
||.+|+++.+. +.|..++|||||||+|||++||++|++| +++++||++|++||+++
T Consensus 204 pG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 204 PGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999998776 6899999999999999999999999999 99999999999999865
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=358.02 Aligned_cols=253 Identities=29% Similarity=0.325 Sum_probs=186.7
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||+|||++||+|.+.- ...+.|..+. ........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~~---------~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDENR---------RISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCCC---------CCCCCCCCCCCC
Confidence 7999999999999999996431 1112222110 011224557789
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||+|+.. ++...||||+|+|+.+|++... + +..++++++|+|+++.+++|||||
T Consensus 45 HGT~vAgiia~~~~----------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~~~~ai~~a~~~~~~Vin~S 105 (254)
T cd07490 45 HGTHVSGTIGGGGA----------KGVYIGVAPEADLLHGKVLDDG--G-------GSLSQIIAGMEWAVEKDADVVSMS 105 (254)
T ss_pred cHHHHHHHHhcCCC----------CCCEEEECCCCEEEEEEEecCC--C-------CcHHHHHHHHHHHHhCCCCEEEEC
Confidence 99999999999742 2335799999999999999865 3 678999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeec
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 380 (775)
||..... .+++..+++.+.+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 106 ~g~~~~~---~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 106 LGGTYYS---EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred CCcCCCC---CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 9983221 5566666665554 69999999999998766666667999999997643211000000
Q ss_pred cCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc
Q 004077 381 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 460 (775)
Q Consensus 381 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 460 (775)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcc
Q 004077 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 540 (775)
Q Consensus 461 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~ 540 (775)
.......++++|... +...||||+|||.+|+++.
T Consensus 171 ---------------------------------------------g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~ 204 (254)
T cd07490 171 ---------------------------------------------GSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSAR 204 (254)
T ss_pred ---------------------------------------------cccccccccCCCCCc-cCCcCceEEeccCCeEccc
Confidence 001222233344332 4678999999999999965
Q ss_pred cCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 541 SEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 541 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
.... ..+.|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 205 ~~~~---------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 205 QGAN---------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred cCCC---------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 3211 1268999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-42 Score=363.54 Aligned_cols=207 Identities=26% Similarity=0.323 Sum_probs=165.4
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 291 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 291 (775)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. + ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~---------~~~~~GvAp~a~i~~~~v~~~~--~-------~~~~~i~~a~~~a~~~~ 127 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN---------GVGVAGVAWGARILPVRVLGKC--G-------GTLSDIVDGMRWAAGLP 127 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC---------CCCceeecCCCeEEEEEEecCC--C-------CcHHHHHHHHHHHhccC
Confidence 3456789999999999997432 2235799999999999999876 4 57889999999998
Q ss_pred -------hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccc
Q 004077 292 -------RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFV 363 (775)
Q Consensus 292 -------~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~ 363 (775)
.++++|||||||.... ....+..++..+.++|++||+||||++... ...+...+++|+|||++.
T Consensus 128 ~~~~~~~~~~~~Iin~S~G~~~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 199 (285)
T cd07496 128 VPGVPVNPNPAKVINLSLGGDGA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL----- 199 (285)
T ss_pred cCCCcccCCCCeEEEeCCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-----
Confidence 4578999999998321 145677888899999999999999999765 344556689999998542
Q ss_pred cceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhc
Q 004077 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 443 (775)
Q Consensus 364 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~ 443 (775)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004077 444 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 523 (775)
Q Consensus 444 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~ 523 (775)
.+.++.||++||..
T Consensus 200 --------------------------------------------------------------~~~~~~~S~~g~~v---- 213 (285)
T cd07496 200 --------------------------------------------------------------RGQRASYSNYGPAV---- 213 (285)
T ss_pred --------------------------------------------------------------CCCcccccCCCCCC----
Confidence 23678899999987
Q ss_pred CCCCceeeCCCcEEEcccCCCCCC--cccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 524 ILKPDITAPGLNILAAWSEASSPS--KLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 524 ~~KPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
||+|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 214 ----di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 214 ----DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ----CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999998876532110 00011123578999999999999999999999999999999999999876
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=361.46 Aligned_cols=251 Identities=25% Similarity=0.294 Sum_probs=181.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|+++++|+||+||||||||+..|| |...++ .+.. .+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~~~-------------------~~~~~------------ 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QVRV-------------------VLAPG------------ 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------ccee-------------------ecCCC------------
Confidence 89999999999999999999999888 754321 1100 00000
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|+.|||||||+++ .||||+|+|+.+|++++ ..+++++||+||+
T Consensus 53 ~~~~~~D~~gHGT~vag~i-------------------~GvAP~a~i~~vkv~~~------------~~~~~~~ai~~a~ 101 (298)
T cd07494 53 ATDPACDENGHGTGESANL-------------------FAIAPGAQFIGVKLGGP------------DLVNSVGAFKKAI 101 (298)
T ss_pred CCCCCCCCCCcchheeece-------------------eEeCCCCeEEEEEccCC------------CcHHHHHHHHHHH
Confidence 1123567889999999875 39999999999999753 3467899999999
Q ss_pred hCCceEEEEccCCCCCCC---------CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEeccccccccc
Q 004077 292 RDGVHVLSISIGTNQPFA---------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDF 362 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~ 362 (775)
+++++|||||||...... .....+..++++|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 102 ~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g 178 (298)
T cd07494 102 SLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG 178 (298)
T ss_pred hcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC
Confidence 999999999999842211 11335777888899999999999999974 456677999999997532200
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
..
T Consensus 179 ---------~~--------------------------------------------------------------------- 180 (298)
T cd07494 179 ---------AR--------------------------------------------------------------------- 180 (298)
T ss_pred ---------cc---------------------------------------------------------------------
Confidence 00
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
......+.|+|. . .+
T Consensus 181 -------------------------------------------------------------~~~~~~~~~~s~---~-~~ 195 (298)
T cd07494 181 -------------------------------------------------------------RASSYASGFRSK---I-YP 195 (298)
T ss_pred -------------------------------------------------------------cccccccCcccc---c-CC
Confidence 000001112221 1 24
Q ss_pred CCCCCce----------------eeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCC
Q 004077 523 YILKPDI----------------TAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 586 (775)
Q Consensus 523 ~~~KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (775)
++.|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|+
T Consensus 196 g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~ 270 (298)
T cd07494 196 GRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLS 270 (298)
T ss_pred CCccCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCC
Confidence 6777877 4799999766532100 001126799999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCC
Q 004077 587 SAAIRSALMTTAWMKNN 603 (775)
Q Consensus 587 ~~~ik~~L~~TA~~~~~ 603 (775)
+++||.+|++||+++..
T Consensus 271 ~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 271 PERARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999999997753
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=352.75 Aligned_cols=241 Identities=28% Similarity=0.330 Sum_probs=189.4
Q ss_pred eEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 143 VIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 143 V~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
|+|||||+|||++||+|++.. +++..+.+.. +...+.|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999997520 1111111111 11135678999
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEcc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 302 (775)
||||||||+|+..+ ...+.||||+|+|+.+|++... + .+...++.++++|+++.+++||||||
T Consensus 43 GT~vAgiiag~~~~---------~~~~~Gvap~a~i~~~~~~~~~--~------~~~~~~~~~ai~~a~~~~~~Vin~S~ 105 (242)
T cd07498 43 GTACAGVAAAVGNN---------GLGVAGVAPGAKLMPVRIADSL--G------YAYWSDIAQAITWAADNGADVISNSW 105 (242)
T ss_pred HHHHHHHHHhccCC---------CceeEeECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHHHCCCeEEEecc
Confidence 99999999997422 2335799999999999999865 2 36889999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHHc-CCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 303 GTNQPFAFNRDGIAIGALNAVK-HNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 303 G~~~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
|...........+..++..+.+ +|+++|+||||+|......+...+++|+|||++.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------- 162 (242)
T cd07498 106 GGSDSTESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------- 162 (242)
T ss_pred CCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------
Confidence 9844333445677777788888 9999999999999776666667799999998542
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.+.++.||+|||.. |++|||.++.+...
T Consensus 163 --------------------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~ 190 (242)
T cd07498 163 --------------------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGT 190 (242)
T ss_pred --------------------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCc
Confidence 23567899999987 99999999988854
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
..... .....+.|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 191 ~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 191 GRGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ccccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 32110 11122678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=361.60 Aligned_cols=279 Identities=30% Similarity=0.344 Sum_probs=198.8
Q ss_pred cCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCC
Q 004077 136 KARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 215 (775)
Q Consensus 136 ~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 215 (775)
++++|+||+|||||||||++||+|.+... .+.. ...+++.....+.. .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 47899999999999999999999976421 0000 12233333222221 2
Q ss_pred CCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004077 216 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 295 (775)
Q Consensus 216 ~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 295 (775)
..|..+|||||||||+|+...... ...+.||||+|+|+.+|++..... .....++..+++++.+.++
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~------~~~~~GvAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 116 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS------ISLYKGVAPKAKLYFQDIGDTSGN-------LSSPPDLNKLFSPMYDAGA 116 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc------ccccccccccCeEEEEEeeccCcc-------ccCCccHHHHHHHHHHhCC
Confidence 227899999999999997533211 114579999999999999887521 2567778999999999999
Q ss_pred eEEEEccCCCCCCCCCccHHHHHHHHHH-c-CCcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEeCC
Q 004077 296 HVLSISIGTNQPFAFNRDGIAIGALNAV-K-HNILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLGT 370 (775)
Q Consensus 296 dVIn~SlG~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~~ 370 (775)
+|||||||..... .......+++++. + +|++||+||||+|.... ..+...+++|+|||++.+......
T Consensus 117 ~Vin~S~G~~~~~--~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----- 189 (293)
T cd04842 117 RISSNSWGSPVNN--GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----- 189 (293)
T ss_pred EEEeccCCCCCcc--ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----
Confidence 9999999994321 1233444444433 3 79999999999997654 445567999999997654311000
Q ss_pred CcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEE
Q 004077 371 GMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLIL 450 (775)
Q Consensus 371 ~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~ 450 (775)
.|..
T Consensus 190 -------------------------------------~~~~--------------------------------------- 193 (293)
T cd04842 190 -------------------------------------GGLG--------------------------------------- 193 (293)
T ss_pred -------------------------------------cccc---------------------------------------
Confidence 0000
Q ss_pred ecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCcee
Q 004077 451 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDIT 530 (775)
Q Consensus 451 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~ 530 (775)
.......++.||++||+. ++++||||+
T Consensus 194 ---------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ 220 (293)
T cd04842 194 ---------------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLV 220 (293)
T ss_pred ---------------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEE
Confidence 001135789999999987 589999999
Q ss_pred eCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-----C---CCCHHHHHHHHHhccc
Q 004077 531 APGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----P---DWSSAAIRSALMTTAW 599 (775)
Q Consensus 531 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~s~~~ik~~L~~TA~ 599 (775)
|||++|+++...... ........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 221 ApG~~i~~~~~~~~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 221 APGTGILSARSGGGG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCCCCeEeccCCCCC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999754200 011122678999999999999999999999985 4 6667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=360.25 Aligned_cols=266 Identities=26% Similarity=0.322 Sum_probs=184.2
Q ss_pred ccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCC
Q 004077 135 SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR 214 (775)
Q Consensus 135 ~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 214 (775)
..+++|+||+|||||+|||++||+|.+... ...+|... .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 347899999999999999999999975311 11122111 1
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCC
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDG 294 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~g 294 (775)
.+.|..||||||||||+|+..+ +...||||+|+|+.+|++.... ......+++||+||++.|
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~----------~~~~GvAp~a~i~~~~~~~~~~--------~~~~~~i~~ai~~a~~~g 102 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP----------GPRYGVARGAEIALIGKVLGDG--------GGGDGGILAGIQWAVANG 102 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC----------CcccccCCCCEEEEEEEEeCCC--------CCcHHHHHHHHHHHHHcC
Confidence 2567899999999999987432 2346999999999999998652 356777999999999999
Q ss_pred ceEEEEccCCCCC--------C-CCCccHHHHHHHHH---------------HcCCcEEEEecCCCCCCCCCCCC-----
Q 004077 295 VHVLSISIGTNQP--------F-AFNRDGIAIGALNA---------------VKHNILVACSAGNSGPAPSSLSN----- 345 (775)
Q Consensus 295 vdVIn~SlG~~~~--------~-~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~----- 345 (775)
++|||||||.... . ......++...+.+ .++|++||+||||+|........
T Consensus 103 ~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~ 182 (297)
T cd07480 103 ADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPA 182 (297)
T ss_pred CCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcc
Confidence 9999999998331 0 11112233333333 68999999999999865332211
Q ss_pred CCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEE
Q 004077 346 LAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 425 (775)
Q Consensus 346 ~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 425 (775)
..++++.|++...
T Consensus 183 ~~~~~~~V~~V~~------------------------------------------------------------------- 195 (297)
T cd07480 183 ACPSAMGVAAVGA------------------------------------------------------------------- 195 (297)
T ss_pred ccccccEEEEECC-------------------------------------------------------------------
Confidence 1123333333211
Q ss_pred EecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCC
Q 004077 426 CMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP 505 (775)
Q Consensus 426 ~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 505 (775)
T Consensus 196 -------------------------------------------------------------------------------- 195 (297)
T cd07480 196 -------------------------------------------------------------------------------- 195 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCC
Q 004077 506 APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 585 (775)
Q Consensus 506 ~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~ 585 (775)
.+....|+++.+. ...||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+
T Consensus 196 ~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~ 258 (297)
T cd07480 196 LGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKA 258 (297)
T ss_pred CCCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCccc
Confidence 0111223333321 34578999999999998876 789999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCcc
Q 004077 586 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPT 629 (775)
Q Consensus 586 s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~ 629 (775)
++.+++.+|+......... ..........+|+|++++.
T Consensus 259 ~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 259 GGRALAALLQARLTAARTT------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred CHHHHHHHHHHHHhhcccC------CCCCCCChhhcCCceeecC
Confidence 9888888887432221100 0012235677899999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=352.52 Aligned_cols=248 Identities=21% Similarity=0.155 Sum_probs=175.1
Q ss_pred cccccC-CCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCC
Q 004077 132 DLLSKA-RYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 210 (775)
Q Consensus 132 ~~~~~~-~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 210 (775)
++|+.. ..|+||+|+|||+|||.+||+|.++... . ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~---------------------------~---~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT---------------------------L---IS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc---------------------------c---cC------------
Confidence 788874 4599999999999999999999753110 0 00
Q ss_pred CCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004077 211 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 290 (775)
Q Consensus 211 ~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 290 (775)
...+.|+.+|||||||||+|.. +.. .+.||||+|+|+.+|++. . ....+.|..|++|+
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~---------n~~-G~~GvAp~a~l~~i~v~~-~---------~~~~~ai~~A~~~~ 101 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKD---------NGI-GVTGIAHGAQAAVVSSTR-V---------SNTADAILDAADYL 101 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeec---------CCC-ceeeeccCCEEEEEEecC-C---------CCHHHHHHHHHhcc
Confidence 0124578899999999999862 111 257999999999999975 1 12333444444443
Q ss_pred HhCCceEEEEccCCCCCCC-----CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC-------------CCCCceEE
Q 004077 291 IRDGVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS-------------NLAPWLIT 352 (775)
Q Consensus 291 ~~~gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~vit 352 (775)
...++.+||||||...... .....+..++.++.++|+++|+||||++....... ...|++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 3356788999999842211 12334556778888999999999999986522111 11256888
Q ss_pred ecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcc
Q 004077 353 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 432 (775)
Q Consensus 353 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 432 (775)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754211
Q ss_pred hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004077 433 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 512 (775)
Q Consensus 433 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 512 (775)
...++.|
T Consensus 190 -------------------------------------------------------------------------~~~~~~f 196 (277)
T cd04843 190 -------------------------------------------------------------------------GHTRLAF 196 (277)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 1137899
Q ss_pred cCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----h-CCCCCH
Q 004077 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----I-HPDWSS 587 (775)
Q Consensus 513 SS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~s~ 587 (775)
|++||.. ||.|||++|+++....... ..+.....|..++|||||||||||++|||++ + +|+|++
T Consensus 197 Sn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~ 265 (277)
T cd04843 197 SNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTP 265 (277)
T ss_pred cCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCH
Confidence 9999987 9999999999998753210 0011113457899999999999999999975 3 499999
Q ss_pred HHHHHHHHhccc
Q 004077 588 AAIRSALMTTAW 599 (775)
Q Consensus 588 ~~ik~~L~~TA~ 599 (775)
+|||++|++|+.
T Consensus 266 ~~v~~~L~~t~~ 277 (277)
T cd04843 266 IEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHhcCC
Confidence 999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=349.75 Aligned_cols=250 Identities=28% Similarity=0.408 Sum_probs=189.4
Q ss_pred CceEEEEeecCCCCCCCCCCCCCCCCCCCCccc---eeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCC
Q 004077 141 QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKG---ICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPR 217 (775)
Q Consensus 141 ~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g---~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (775)
+||+|||||||||++||+|.+. .|.. .+..+... +....+.. ..+++. ......+.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~-------~~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDD----DGNGYVDD---IYGWNF-------VNNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCccc----CCCCcccC---CCcccc-------cCCCCCCC
Confidence 6899999999999999999864 2321 11111100 00000000 000000 01224567
Q ss_pred CCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceE
Q 004077 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHV 297 (775)
Q Consensus 218 D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdV 297 (775)
|..+|||||||||+|...+ ...+.||||+|+|+.+|++... + .+...+++++|+++++.+++|
T Consensus 61 d~~~HGT~va~ii~~~~~~---------~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~v 123 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNN---------GIGIAGVAWNVKIMPLKFLGAD--G------SGTTSDAIKAIDYAVDMGAKI 123 (259)
T ss_pred CCCCcHHHHHHHHHCcCCC---------CCceEEeCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCeE
Confidence 8899999999999987432 2335799999999999999876 3 478899999999999999999
Q ss_pred EEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC---CCCC--CCCceEEecccccccccccceEeCCCc
Q 004077 298 LSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS---SLSN--LAPWLITVGAGSLDRDFVGPVVLGTGM 372 (775)
Q Consensus 298 In~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~--~~p~vitVgAs~~~~~~~~~~~~~~~~ 372 (775)
||+|||... ....+..++.++.++|++||+||||+|.... .++. ..+++|+||+.+.
T Consensus 124 in~S~G~~~----~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~-------------- 185 (259)
T cd07473 124 INNSWGGGG----PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS-------------- 185 (259)
T ss_pred EEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC--------------
Confidence 999999832 2567777888899999999999999986522 2222 3478899987542
Q ss_pred EEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEec
Q 004077 373 EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGN 452 (775)
Q Consensus 373 ~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n 452 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeC
Q 004077 453 SPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAP 532 (775)
Q Consensus 453 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~AP 532 (775)
.+.++.||++||. +||+.||
T Consensus 186 -----------------------------------------------------~~~~~~~s~~g~~-------~~~~~ap 205 (259)
T cd07473 186 -----------------------------------------------------NDALASFSNYGKK-------TVDLAAP 205 (259)
T ss_pred -----------------------------------------------------CCCcCcccCCCCC-------CcEEEec
Confidence 2356679999985 3599999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
|.++++..+. +.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 206 G~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 206 GVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 9999997665 68999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=339.78 Aligned_cols=227 Identities=32% Similarity=0.464 Sum_probs=186.1
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||+||+++||+|.+. ++..++|.... .....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~------------~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD------------NNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC------------CCCCCCCCC
Confidence 799999999999999999743 11222222210 024567889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||++.... ..+.|+||+|+|+.+|+++.. + .....+++++++++++.+++|||||
T Consensus 42 HGT~vA~ii~~~~~~----------~~~~giap~a~i~~~~~~~~~--~------~~~~~~l~~ai~~a~~~~~~Vin~S 103 (229)
T cd07477 42 HGTHVAGIIAALDNG----------VGVVGVAPEADLYAVKVLNDD--G------SGTYSDIIAGIEWAIENGMDIINMS 103 (229)
T ss_pred CHHHHHHHHhcccCC----------CccEeeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHHHCCCCEEEEC
Confidence 999999999987421 145799999999999999876 3 3567899999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccccccceEeCCCcEEeeeee
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTV 379 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~ 379 (775)
||... ....+..++..+.++|+++|+||||++...... +...+++|+||+++.
T Consensus 104 ~g~~~----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~--------------------- 158 (229)
T cd07477 104 LGGPS----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS--------------------- 158 (229)
T ss_pred CccCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC---------------------
Confidence 99832 234566677888999999999999999776554 566789999998542
Q ss_pred ccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc
Q 004077 380 TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE 459 (775)
Q Consensus 380 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~ 459 (775)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEc
Q 004077 460 YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 539 (775)
Q Consensus 460 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa 539 (775)
.+.++.||++|+.. |+.|||.+|+++
T Consensus 159 ----------------------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~ 184 (229)
T cd07477 159 ----------------------------------------------NNNRASFSSTGPEV--------ELAAPGVDILST 184 (229)
T ss_pred ----------------------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEe
Confidence 23566899999976 999999999999
Q ss_pred ccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 540 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
++. +.|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 185 ~~~-------------~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 185 YPN-------------NDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred cCC-------------CCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876 688999999999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=343.00 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=119.5
Q ss_pred CCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCC
Q 004077 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDM 219 (775)
Q Consensus 140 G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~ 219 (775)
+++|+|||||||||++||+|.+. ++..+.|....... ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~~------~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGDG------NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCCc------ccCCCCCCCC
Confidence 78999999999999999999743 11222222210000 0001123578
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 299 (775)
.||||||||||+ |+||+|+|+.+|+++....+ .....++...+++||+||+++|+||||
T Consensus 49 ~gHGT~vAgiI~-------------------gvap~a~i~~~kv~~~~~~~--~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 49 DGHGTAMARMIC-------------------RICPSAKLYVIKLEDRPSPD--SNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCcHHHHHHHHH-------------------HHCCCCeEEEEEecccCCCC--CcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 899999999995 78999999999999865211 001135778899999999999999999
Q ss_pred EccCCCCCC--CCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCC--CCCCceEEecccc
Q 004077 300 ISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLS--NLAPWLITVGAGS 357 (775)
Q Consensus 300 ~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~--~~~p~vitVgAs~ 357 (775)
||||..... ......+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 999983321 123567888889999999999999999997654 333 3458999999865
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=355.90 Aligned_cols=275 Identities=33% Similarity=0.442 Sum_probs=207.2
Q ss_pred EEEEeecCCCCCCCCCC-CCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCc
Q 004077 144 IVGLVDNGVWPESKSFS-DEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGH 222 (775)
Q Consensus 144 ~VgVIDtGid~~Hp~f~-d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gH 222 (775)
+|||||||||++||+|. .+ + ...++.+.+.|.+.. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999997 22 0 112333445554432 112355678899
Q ss_pred cccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hCCceEEEEc
Q 004077 223 GTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RDGVHVLSIS 301 (775)
Q Consensus 223 GTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~S 301 (775)
||||||||+|.. . . ......|+||+|+|+.+|++... + .....++++|++++ +++++|||||
T Consensus 49 GT~va~ii~~~~-~-~------~~~~~~Gva~~a~l~~~~i~~~~--~-------~~~~~~~~ai~~~~~~~~~~Vin~S 111 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N------NGPGINGVAPNAKLYSYKIFDNS--G-------GTSSDLIEAIEYAVKNDGVDVINLS 111 (282)
T ss_dssp HHHHHHHHHHTT-S-S------SSSSETCSSTTSEEEEEECSSTT--S-------EEHHHHHHHHHHHHHHTTSSEEEEC
T ss_pred cchhhhhccccc-c-c------ccccccccccccccccccccccc--c-------cccccccchhhhhhhccCCcccccc
Confidence 999999999985 1 1 12234799999999999997765 2 57888999999999 8999999999
Q ss_pred cCCCC--CCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---CCCCCCceEEecccccccccccceEeCCCcEEee
Q 004077 302 IGTNQ--PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 302 lG~~~--~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
||... ......+.+..+.+.+.++|+++|+||||+|+.... .+...+++|+||+++.
T Consensus 112 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------ 173 (282)
T PF00082_consen 112 FGSNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------ 173 (282)
T ss_dssp EEBEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------
T ss_pred ccccccccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------
Confidence 98822 112233445666778899999999999999876543 3334478899987431
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcE
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 536 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I 536 (775)
.+.++.||++|+... ++++||||+|||.+|
T Consensus 174 -------------------------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i 203 (282)
T PF00082_consen 174 -------------------------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNI 203 (282)
T ss_dssp -------------------------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSE
T ss_pred -------------------------------------------------ccccccccccccccc-ccccccccccccccc
Confidence 235678999976543 589999999999999
Q ss_pred EEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCC
Q 004077 537 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIA 616 (775)
Q Consensus 537 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 616 (775)
++.++.... ..|..++|||||||+|||++||++|++|.+++++||.+|++||.+....+ ...
T Consensus 204 ~~~~~~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~ 265 (282)
T PF00082_consen 204 LSAVPGSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEG 265 (282)
T ss_dssp EEEETTTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSS
T ss_pred ccccccccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCC
Confidence 988876210 35888999999999999999999999999999999999999999887211 233
Q ss_pred CCCccceeccCccccCC
Q 004077 617 TPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 617 ~~~~~G~G~vn~~~Al~ 633 (775)
.+..||+|+||+.+||+
T Consensus 266 ~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 266 YDNSYGWGLINAEKALN 282 (282)
T ss_dssp SHHHHTTSBE-HHHHHH
T ss_pred CCCCccCChhCHHHHhC
Confidence 56788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=350.87 Aligned_cols=255 Identities=23% Similarity=0.241 Sum_probs=174.6
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
.|+|||||||||++||+|++.-. ...+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS--------------------------SYSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc--------------------------ccccccccCCCcCCccccccCCCCcCCCCCC
Confidence 38999999999999999975311 0000110000000000000111234567899
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||+|+|+. . ..||||+|+|+.+|+++.. + .....+++++|++|++++++|||||
T Consensus 55 HGT~vAgiia~~~---------~----~~GvAp~a~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~~~vin~S 113 (294)
T cd07482 55 HGTAVAGQIAANG---------N----IKGVAPGIGIVSYRVFGSC--G------SAESSWIIKAIIDAADDGVDVINLS 113 (294)
T ss_pred cHhHHHHHHhcCC---------C----CceeCCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 9999999999862 1 2499999999999999876 3 2478899999999999999999999
Q ss_pred cCCCCCCCC-------CccHHHHHHHHHHcCCcEEEEecCCCCCCCCC----------------------CCCCCCceEE
Q 004077 302 IGTNQPFAF-------NRDGIAIGALNAVKHNILVACSAGNSGPAPSS----------------------LSNLAPWLIT 352 (775)
Q Consensus 302 lG~~~~~~~-------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----------------------~~~~~p~vit 352 (775)
||....... ..+.+..++..+.++|++||+||||+|..... .+...+++|+
T Consensus 114 ~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~ 193 (294)
T cd07482 114 LGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVIT 193 (294)
T ss_pred CccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEE
Confidence 998432211 12346667777889999999999999965311 1112244444
Q ss_pred ecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcc
Q 004077 353 VGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGF 432 (775)
Q Consensus 353 VgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~ 432 (775)
|||++
T Consensus 194 Vga~~--------------------------------------------------------------------------- 198 (294)
T cd07482 194 VSATD--------------------------------------------------------------------------- 198 (294)
T ss_pred EEeeC---------------------------------------------------------------------------
Confidence 44432
Q ss_pred hhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccc
Q 004077 433 KLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANF 512 (775)
Q Consensus 433 ~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 512 (775)
..+.++.|
T Consensus 199 ------------------------------------------------------------------------~~~~~~~~ 206 (294)
T cd07482 199 ------------------------------------------------------------------------NNGNLSSF 206 (294)
T ss_pred ------------------------------------------------------------------------CCCCcCcc
Confidence 13467789
Q ss_pred cCCCCCCCCCCCCCCceeeCCCcEEEcccCCCC---CCc------ccCCccccccEEeeccCchhhHHHHHHHHHHHhCC
Q 004077 513 TSRGPNALDPYILKPDITAPGLNILAAWSEASS---PSK------LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP 583 (775)
Q Consensus 513 SS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P 583 (775)
|++|+.. +|++|||+++......... ... .......+.|..++|||||||+|||++|||+|++|
T Consensus 207 S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p 279 (294)
T cd07482 207 SNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNP 279 (294)
T ss_pred ccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCC
Confidence 9998754 3999999998532211100 000 00112336899999999999999999999999999
Q ss_pred CCCH-HHHHHHHHhc
Q 004077 584 DWSS-AAIRSALMTT 597 (775)
Q Consensus 584 ~~s~-~~ik~~L~~T 597 (775)
.+++ .+||++|++|
T Consensus 280 ~~~~~~~v~~~L~~T 294 (294)
T cd07482 280 LKKPPDEAIRILYNT 294 (294)
T ss_pred CCCcHHHHHHHHhhC
Confidence 9999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=349.44 Aligned_cols=247 Identities=20% Similarity=0.161 Sum_probs=179.4
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|+|||||||++||+|.+.... ...++|....
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCC-----------
Confidence 8999999999999999999999999999754210 0112222110
Q ss_pred CCCCC--CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSP--RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~--~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
....+ .|..||||||||||+|+.... ....||||+|+|+.+|++... ........++.+
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiiag~~~~~---------~~~~GvAp~a~l~~~~~~~~~----------~~~~~~~~~~~~ 134 (297)
T cd04059 74 PDPTPRYDDDNSHGTRCAGEIAAVGNNG---------ICGVGVAPGAKLGGIRMLDGD----------VTDVVEAESLGL 134 (297)
T ss_pred CCCCCccccccccCcceeeEEEeecCCC---------cccccccccceEeEEEecCCc----------cccHHHHHHHhc
Confidence 01122 278899999999999984221 134699999999999998754 234455566665
Q ss_pred HHhCCceEEEEccCCCCCCC---CCccHHHHHHHHHHc-----CCcEEEEecCCCCCCCCCC----CCCCCceEEecccc
Q 004077 290 AIRDGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSSL----SNLAPWLITVGAGS 357 (775)
Q Consensus 290 a~~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~~----~~~~p~vitVgAs~ 357 (775)
+.+ .++|||||||...... ........++.++.+ +|++||+||||+|...... ....|++|+|||++
T Consensus 135 ~~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~ 213 (297)
T cd04059 135 NPD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVT 213 (297)
T ss_pred ccC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeC
Confidence 544 5699999999843221 122233444444443 6999999999999732221 12347899999854
Q ss_pred cccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhh
Q 004077 358 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 437 (775)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~ 437 (775)
.
T Consensus 214 ~------------------------------------------------------------------------------- 214 (297)
T cd04059 214 A------------------------------------------------------------------------------- 214 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred hHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004077 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 517 (775)
Q Consensus 438 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP 517 (775)
.+.++.||++|+
T Consensus 215 --------------------------------------------------------------------~g~~~~~s~~g~ 226 (297)
T cd04059 215 --------------------------------------------------------------------NGVRASYSEVGS 226 (297)
T ss_pred --------------------------------------------------------------------CCCCcCCCCCCC
Confidence 246678999999
Q ss_pred CCCCCCCCCCceeeCCCc-------EEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHH
Q 004077 518 NALDPYILKPDITAPGLN-------ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAI 590 (775)
Q Consensus 518 ~~~~d~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~i 590 (775)
.. +++|||.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.+|
T Consensus 227 ~~--------~~~a~g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v 288 (297)
T cd04059 227 SV--------LASAPSGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDV 288 (297)
T ss_pred cE--------EEEecCCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHH
Confidence 87 89999987 776655410 146788999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 004077 591 RSALMTTAW 599 (775)
Q Consensus 591 k~~L~~TA~ 599 (775)
|++|++||+
T Consensus 289 ~~~L~~TA~ 297 (297)
T cd04059 289 QHILALTAR 297 (297)
T ss_pred HHHHHHhcC
Confidence 999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=330.16 Aligned_cols=222 Identities=21% Similarity=0.242 Sum_probs=172.8
Q ss_pred ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCC
Q 004077 142 DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDG 221 (775)
Q Consensus 142 GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 221 (775)
||+|||||||||++||+|.+.-. ..+.+..+ . ...+.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc-c-------cccCCCCCCCCCC
Confidence 79999999999999999975311 00111000 0 0011234567889
Q ss_pred ccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 222 HGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 222 HGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||||++ .+|+++|+.+|+++.. + .+..+.+++||+|++++|++|||||
T Consensus 46 HGT~vAgiia~-------------------~~p~~~i~~~~v~~~~--~------~~~~~~~~~ai~~a~~~~v~Vin~S 98 (222)
T cd07492 46 HGTACAGIIKK-------------------YAPEAEIGSIKILGED--G------RCNSFVLEKALRACVENDIRIVNLS 98 (222)
T ss_pred cHHHHHHHHHc-------------------cCCCCeEEEEEEeCCC--C------CcCHHHHHHHHHHHHHCCCCEEEeC
Confidence 99999999984 3599999999999876 3 4788999999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeecc
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTP 381 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~ 381 (775)
||... ......+..+++++.++|+++|+||||++.... .+...+++|+|++.+.+.
T Consensus 99 ~G~~~--~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 99 LGGPG--DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCCCC--CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------
Confidence 99832 223356677888888999999999999986533 245568899999753211
Q ss_pred CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc
Q 004077 382 YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS 461 (775)
Q Consensus 382 ~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~ 461 (775)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEccc
Q 004077 462 YDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWS 541 (775)
Q Consensus 462 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~ 541 (775)
.. +.+++ ++|+.|||.+|+++.+
T Consensus 155 ----------------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~ 177 (222)
T cd07492 155 ----------------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAP 177 (222)
T ss_pred ----------------------------------------------Cc---ccccC--------CceEEeCCCCeEeecC
Confidence 11 11233 3499999999999987
Q ss_pred CCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 542 EASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 542 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
. +.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 178 ~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 178 H-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred C-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 6 68999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=331.44 Aligned_cols=245 Identities=31% Similarity=0.353 Sum_probs=186.0
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004077 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 218 (775)
Q Consensus 139 ~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 218 (775)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------------~~~~~~~~---------~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------------SYYVAVND---------AGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------------cccccccc---------ccCCCCCC
Confidence 6999999999999999999997542100 00000000 00124457
Q ss_pred CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004077 219 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 298 (775)
Q Consensus 219 ~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 298 (775)
..+|||||||||+|+..+ ..+.|+||+|+|+.+|+++.... .+....+.++++++++.+++||
T Consensus 45 ~~~HGT~vagiiag~~~~----------~~~~GiAp~a~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~Vi 107 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG----------GGMHGVAPDATLYSARASASAGS-------TFSDADIAAAYDFLAASGVRII 107 (267)
T ss_pred CCChHHHHHHHHhcCcCC----------CCcccCCcCCEEEEEeccCCCCc-------ccchHHHHHHHHHHHhCCCeEE
Confidence 789999999999987422 34579999999999999986521 2567889999999999999999
Q ss_pred EEccCCCCCCC-----------CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC---------CCCCceEEeccccc
Q 004077 299 SISIGTNQPFA-----------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---------NLAPWLITVGAGSL 358 (775)
Q Consensus 299 n~SlG~~~~~~-----------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgAs~~ 358 (775)
|||||...... .....+....+.+.++|+++|+||||++....... ...+++|+||+++.
T Consensus 108 n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~ 187 (267)
T cd04848 108 NNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDP 187 (267)
T ss_pred EccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecC
Confidence 99999853221 24556677778899999999999999986543322 23478899998653
Q ss_pred ccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhh
Q 004077 359 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 438 (775)
Q Consensus 359 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~ 438 (775)
+.
T Consensus 188 ~~------------------------------------------------------------------------------ 189 (267)
T cd04848 188 NG------------------------------------------------------------------------------ 189 (267)
T ss_pred CC------------------------------------------------------------------------------
Confidence 22
Q ss_pred HhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcccc--ccCCC
Q 004077 439 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMAN--FTSRG 516 (775)
Q Consensus 439 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~G 516 (775)
.... ||++|
T Consensus 190 ---------------------------------------------------------------------~~~~~~~s~~~ 200 (267)
T cd04848 190 ---------------------------------------------------------------------TIASYSYSNRC 200 (267)
T ss_pred ---------------------------------------------------------------------Ccccccccccc
Confidence 2223 48887
Q ss_pred CCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 004077 517 PNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMT 596 (775)
Q Consensus 517 P~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~ 596 (775)
+.. ..+++.|||.+|+++.+.. ...|..++|||||||+|||++||++|++|.+++++||++|++
T Consensus 201 ~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~ 264 (267)
T cd04848 201 GVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLT 264 (267)
T ss_pred hhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence 643 2347999999999998731 157889999999999999999999999999999999999999
Q ss_pred ccc
Q 004077 597 TAW 599 (775)
Q Consensus 597 TA~ 599 (775)
||+
T Consensus 265 tA~ 267 (267)
T cd04848 265 TAT 267 (267)
T ss_pred hcC
Confidence 985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=312.46 Aligned_cols=363 Identities=25% Similarity=0.322 Sum_probs=262.9
Q ss_pred CceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhh------hcceEEeeceeEeEEEEEcCH-----HHHHhhcc-
Q 004077 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEA------RASHLYSYKHSINGFSAVLTP-----DEAARLSE- 90 (775)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~i~~~y~~~~ng~~~~l~~-----~~~~~L~~- 90 (775)
...|||.|+..- ....|+.++++.+...+.. +...-.+|...|.-+-++=.. -++++|..
T Consensus 49 e~EyIv~F~~y~--------~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~h 120 (1033)
T KOG4266|consen 49 ESEYIVRFKQYK--------PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMH 120 (1033)
T ss_pred cceeEEEecccc--------cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcC
Confidence 358999999655 2235777888777643311 111233455545544443322 24667776
Q ss_pred -ccceEEecCCCcccccc------------cCCcccc-ccch---hh----hcccC-c--------cc--ccccccccCC
Q 004077 91 -EVVSVYPSHPEKYSLQT------------TRSWEFV-GLDE---VA----KQNWN-H--------FN--MGQDLLSKAR 138 (775)
Q Consensus 91 -~V~~V~~~~~~~~~~~~------------~~s~~~~-gl~~---~~----~~~~~-~--------~~--~~~~~~~~~~ 138 (775)
.|+.|.|-+ .+..-. +.+-.++ |... .+ ..+++ | .. .++.+|..|+
T Consensus 121 p~vk~v~pqr--~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~Gy 198 (1033)
T KOG4266|consen 121 PDVKVVFPQR--RVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGY 198 (1033)
T ss_pred CCceeecchh--hhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccc
Confidence 888888877 432210 0000000 1000 00 00000 1 01 2358999999
Q ss_pred CCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCC
Q 004077 139 YGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRD 218 (775)
Q Consensus 139 ~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D 218 (775)
+|++|+|||.|||+.-+||.|+.- -...+++++ ....|
T Consensus 199 TGa~VkvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD 236 (1033)
T KOG4266|consen 199 TGAKVKVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDD 236 (1033)
T ss_pred cCCceEEEEeecccccCCccccch----------------------------hhhcCCcCc--------------ccccc
Confidence 999999999999999999999742 011112221 24557
Q ss_pred CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEE
Q 004077 219 MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVL 298 (775)
Q Consensus 219 ~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVI 298 (775)
..||||.|||+|||.. ...|.||+++|++.|||-+.. -...+..++|+.||+..+.||+
T Consensus 237 ~lgHGTFVAGvia~~~-------------ec~gfa~d~e~~~frvft~~q--------VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 237 NLGHGTFVAGVIAGRN-------------ECLGFASDTEIYAFRVFTDAQ--------VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred CcccceeEeeeeccch-------------hhcccCCccceeEEEeeccce--------eehhhHHHHHHHHHHhhhcceE
Confidence 8899999999999873 236999999999999998763 3688999999999999999999
Q ss_pred EEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCC--ceEEecccccccccccceEeCCCcEEee
Q 004077 299 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAP--WLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 299 n~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
|+|+|++ ++.+.|+-..+..+...+|++|.|+||+||-.++..+++. .||-||..
T Consensus 296 NLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI-------------------- 352 (1033)
T KOG4266|consen 296 NLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI-------------------- 352 (1033)
T ss_pred eeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc--------------------
Confidence 9999993 4667788777778889999999999999999999988763 56666632
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC----CCCCCCCceeeC
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL----DPYILKPDITAP 532 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~----~d~~~KPDI~AP 532 (775)
...+.+|.|||||-+.. .-+|+||||++-
T Consensus 353 -----------------------------------------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtY 385 (1033)
T KOG4266|consen 353 -----------------------------------------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTY 385 (1033)
T ss_pred -----------------------------------------------cccchhhhhccCCcceeecCCcccccCCceEee
Confidence 12468999999996542 248999999999
Q ss_pred CCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCcc
Q 004077 533 GLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKNNKALPI 608 (775)
Q Consensus 533 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~~~g~~~ 608 (775)
|.+|...... .+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+.+|.+++..
T Consensus 386 G~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---- 448 (1033)
T KOG4266|consen 386 GRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---- 448 (1033)
T ss_pred ccccccCccc-------------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----
Confidence 9999877655 6778899999999999999999976 334578999999999999998753
Q ss_pred cCCCCCCCCCCccceeccCccccCC
Q 004077 609 TNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 609 ~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.-++||+|++|+.++++
T Consensus 449 --------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 449 --------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred --------chhhccCcchhHHHHHH
Confidence 45789999999999876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.29 Aligned_cols=241 Identities=24% Similarity=0.261 Sum_probs=186.3
Q ss_pred CCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCceEEE
Q 004077 220 DGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299 (775)
Q Consensus 220 ~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 299 (775)
.-|||||||||+|+..+... ..||||+|+|+.+++-+..... ..+...+.+|+..++++++||||
T Consensus 310 g~HGTHVAgIa~anhpe~p~---------~NGvAPgaqIvSl~IGD~RLgs------METgtaltRA~~~v~e~~vDiIN 374 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE---------LNGVAPGAQIVSLKIGDGRLGS------METGTALTRAMIEVIEHNVDIIN 374 (1304)
T ss_pred CCCcceehhhhccCCCCCcc---------ccCCCCCCEEEEEEecCccccc------cccchHHHHHHHHHHHhcCCEEE
Confidence 45999999999999765443 3499999999999997654311 34566799999999999999999
Q ss_pred EccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCC---CceEEecccccccccccceEeCCCcEEee
Q 004077 300 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLA---PWLITVGAGSLDRDFVGPVVLGTGMEIIG 376 (775)
Q Consensus 300 ~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~---p~vitVgAs~~~~~~~~~~~~~~~~~~~g 376 (775)
||+|-+...+.....++.+-..+.+.|+++|+||||+||...+++.+. ..+|.|||.-...+..+...+
T Consensus 375 mSyGE~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~y~~-------- 446 (1304)
T KOG1114|consen 375 MSYGEDAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAEYSV-------- 446 (1304)
T ss_pred eccCccCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhhhhh--------
Confidence 999985444444556666666667899999999999999988877643 588889884322211110000
Q ss_pred eeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC
Q 004077 377 KTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 377 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
T Consensus 447 -------------------------------------------------------------------------------- 446 (1304)
T KOG1114|consen 447 -------------------------------------------------------------------------------- 446 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcE
Q 004077 457 GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI 536 (775)
Q Consensus 457 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I 536 (775)
..+-......||||||+. ||.+--.|+|||+.|
T Consensus 447 ---------------------------------------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAi 479 (1304)
T KOG1114|consen 447 ---------------------------------------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAI 479 (1304)
T ss_pred ---------------------------------------------hccCCCCccccccCCCCc--CCCcceEEecCCccc
Confidence 001134577899999998 799999999999998
Q ss_pred EEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCcccCCC
Q 004077 537 LAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALPITNAD 612 (775)
Q Consensus 537 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~ 612 (775)
.+.-.- .- ..-..|.|||||+|+++|.+|||++. +-.|||..||.+|++||.++++.
T Consensus 480 AsVP~~-tl----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i-------- 540 (1304)
T KOG1114|consen 480 ASVPQY-TL----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI-------- 540 (1304)
T ss_pred cCCchh-hh----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------
Confidence 664211 10 45678999999999999999999764 56899999999999999998764
Q ss_pred CCCCCCCccceeccCccccCC
Q 004077 613 GSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 613 ~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.++.||.|+|++.+|.+
T Consensus 541 ----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 541 ----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred ----chhccCcceeehhHHHH
Confidence 67899999999999986
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.15 Aligned_cols=195 Identities=24% Similarity=0.241 Sum_probs=141.8
Q ss_pred CCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH--HhC
Q 004077 216 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA--IRD 293 (775)
Q Consensus 216 ~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a--~~~ 293 (775)
..|..||||||||||||. .|++|+++|+..++.. ...+.+..+++|+ .+.
T Consensus 33 ~~~~~~HGThVAgiiag~----------------~~~~p~a~~~~~~~~~------------~~~~~~~~~i~~~~~~~~ 84 (247)
T cd07488 33 NNTFDDHATLVASIMGGR----------------DGGLPAVNLYSSAFGI------------KSNNGQWQECLEAQQNGN 84 (247)
T ss_pred CCCCCCHHHHHHHHHHhc----------------cCCCCccceehhhhCC------------CCCCccHHHHHHHHHhcC
Confidence 457899999999999986 2667999998766522 1223456677777 567
Q ss_pred CceEEEEccCCCCCCC-----CCccHHHHHHHHHHcC-CcEEEEecCCCCCCCCC-----CCCCCCceEEeccccccccc
Q 004077 294 GVHVLSISIGTNQPFA-----FNRDGIAIGALNAVKH-NILVACSAGNSGPAPSS-----LSNLAPWLITVGAGSLDRDF 362 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgAs~~~~~~ 362 (775)
+++|||||||...... ...+.+..+++.+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 85 gv~VINmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~- 163 (247)
T cd07488 85 NVKIINHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD- 163 (247)
T ss_pred CceEEEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-
Confidence 9999999999843322 2334567777777666 99999999999975322 2234578999998653220
Q ss_pred ccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhh
Q 004077 363 VGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKR 442 (775)
Q Consensus 363 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~ 442 (775)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCC
Q 004077 443 AGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDP 522 (775)
Q Consensus 443 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d 522 (775)
....+.||++|-....+
T Consensus 164 ---------------------------------------------------------------~~~~s~~sn~~~~~~~~ 180 (247)
T cd07488 164 ---------------------------------------------------------------RFFASDVSNAGSEINSY 180 (247)
T ss_pred ---------------------------------------------------------------cceecccccccCCCCCC
Confidence 01234566654222225
Q ss_pred CCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCH------HHHHHHHHh
Q 004077 523 YILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS------AAIRSALMT 596 (775)
Q Consensus 523 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~------~~ik~~L~~ 596 (775)
+..||||+|||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|++
T Consensus 181 ~~~~~di~APG~~i~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~ 245 (247)
T cd07488 181 GRRKVLIVAPGSNYNL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSS 245 (247)
T ss_pred CCceeEEEEeeeeEEC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhc
Confidence 7899999999999998 32 57889999999999999999999999887764 456666666
Q ss_pred c
Q 004077 597 T 597 (775)
Q Consensus 597 T 597 (775)
|
T Consensus 246 ~ 246 (247)
T cd07488 246 S 246 (247)
T ss_pred c
Confidence 5
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=270.24 Aligned_cols=197 Identities=34% Similarity=0.443 Sum_probs=156.7
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH-hC
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI-RD 293 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~-~~ 293 (775)
...+..+||||||++|++..... ...|+||+++|+.+|+.... + ......+++++++++ ..
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~----------~~~g~a~~a~i~~~~~~~~~--~------~~~~~~~~~ai~~~~~~~ 100 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG----------GGVGVAPGAKLIPVKVLDGD--G------SGSSSDIAAAIDYAAADQ 100 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC----------CCEEeCCCCEEEEEEEecCC--C------CcCHHHHHHHHHHHHhcc
Confidence 45567899999999999874221 12699999999999998765 2 367889999999999 89
Q ss_pred CceEEEEccCCCCCCCCCccHHHHHHHHHHcC-CcEEEEecCCCCCCCC---CCCCCCCceEEecccccccccccceEeC
Q 004077 294 GVHVLSISIGTNQPFAFNRDGIAIGALNAVKH-NILVACSAGNSGPAPS---SLSNLAPWLITVGAGSLDRDFVGPVVLG 369 (775)
Q Consensus 294 gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgAs~~~~~~~~~~~~~ 369 (775)
+++|||||||..... ....+...+..+.++ |+++|+||||.+.... ......+++|+||+++.+.
T Consensus 101 ~~~iin~S~g~~~~~--~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------- 169 (241)
T cd00306 101 GADVINLSLGGPGSP--PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------- 169 (241)
T ss_pred CCCEEEeCCCCCCCC--CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------
Confidence 999999999994221 345677777888888 9999999999997765 3556679999999865322
Q ss_pred CCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEE
Q 004077 370 TGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLI 449 (775)
Q Consensus 370 ~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i 449 (775)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccc-cccCCCCCCCCCCCCCCc
Q 004077 450 LGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA-NFTSRGPNALDPYILKPD 528 (775)
Q Consensus 450 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~d~~~KPD 528 (775)
... .++++|+ |||
T Consensus 170 ----------------------------------------------------------~~~~~~~~~~~--------~~~ 183 (241)
T cd00306 170 ----------------------------------------------------------TPASPSSNGGA--------GVD 183 (241)
T ss_pred ----------------------------------------------------------CccCCcCCCCC--------Cce
Confidence 111 3444444 569
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhc
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~T 597 (775)
+.|||.++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 184 ~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 184 IAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred EEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999875111 11689999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=243.77 Aligned_cols=250 Identities=29% Similarity=0.432 Sum_probs=186.7
Q ss_pred ccccc--CCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCC
Q 004077 132 DLLSK--ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 209 (775)
Q Consensus 132 ~~~~~--~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 209 (775)
..|.. +++|+||.|+|||+||+..||+|.+... ..++|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~---------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDG---------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccC----------
Confidence 57776 8999999999999999999999975421 00122221
Q ss_pred CCCCC-CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004077 210 TEDDR-SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 288 (775)
Q Consensus 210 ~~~~~-~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 288 (775)
... ...|..+|||||+|++++.... ......|+||+++++.+|++.... | .....+++.+|+
T Consensus 174 --~~~~~~~d~~~hGt~vag~ia~~~~~--------~~~~~~g~a~~~~~~~~~~~~~~~-g------~~~~~~~~~~i~ 236 (508)
T COG1404 174 --DPEPPFLDDNGHGTHVAGTIAAVIFD--------NGAGVAGVAPGAKLLLVKVLGSGG-G------SGELSDVAEGIE 236 (508)
T ss_pred --CCCCCCCCCCCCcceeeeeeeeeccc--------CCCccccccCCCcEEEEEeccCCC-C------cccHHHHHHHHH
Confidence 011 2568899999999999984211 112357999999999999998653 3 467888899999
Q ss_pred HHHhCC--ceEEEEccCCCCCCCCCccHHHHHHHHHHcCC-cEEEEecCCCCCCCCC----CCCCC--CceEEecccccc
Q 004077 289 DAIRDG--VHVLSISIGTNQPFAFNRDGIAIGALNAVKHN-ILVACSAGNSGPAPSS----LSNLA--PWLITVGAGSLD 359 (775)
Q Consensus 289 ~a~~~g--vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgAs~~~ 359 (775)
++++.+ +++||||+|.. ........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 237 ~~~~~~~~~~~in~s~g~~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~- 314 (508)
T COG1404 237 GAANLGGPADVINLSLGGS-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL- 314 (508)
T ss_pred HHHhcCCCCcEEEecCCCC-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-
Confidence 999999 99999999983 22234455666677777777 9999999999866421 11111 35666665321
Q ss_pred cccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhH
Q 004077 360 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 439 (775)
Q Consensus 360 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~ 439 (775)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 440 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 440 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
.+.++.||++|+..
T Consensus 315 ------------------------------------------------------------------~~~~~~~s~~g~~~ 328 (508)
T COG1404 315 ------------------------------------------------------------------SDTVASFSNDGSPT 328 (508)
T ss_pred ------------------------------------------------------------------CCccccccccCCCC
Confidence 24677899999741
Q ss_pred CCCCCCCCceeeCCCcEEE-----cccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC-CCCHHHHHHH
Q 004077 520 LDPYILKPDITAPGLNILA-----AWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSA 593 (775)
Q Consensus 520 ~~d~~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~ 593 (775)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..
T Consensus 329 ------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~ 391 (508)
T COG1404 329 ------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNL 391 (508)
T ss_pred ------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHH
Confidence 1299999999998 444310 2499999999999999999999999999 8999999999
Q ss_pred HHhcccc
Q 004077 594 LMTTAWM 600 (775)
Q Consensus 594 L~~TA~~ 600 (775)
+..++..
T Consensus 392 ~~~~~~~ 398 (508)
T COG1404 392 IVTTAGL 398 (508)
T ss_pred Hhhcccc
Confidence 8888874
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=190.03 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=102.8
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..|++|++|.++|.|.||||.|||+..+ ..--..++|..+..+.
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n-------------------------ynaeasydfssndpfp-------- 198 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------------YNAEASYDFSSNDPFP-------- 198 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc-------------------------cCceeecccccCCCCC--------
Confidence 8999999999999999999999999999632 1112234444432111
Q ss_pred CCCCCCC--CCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSPRD--MDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~~D--~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
+.-..| .+.|||.|||-+++...++.. | .|||.+.++..+|.++. -...|+++|-..
T Consensus 199 -yprytddwfnshgtrcagev~aardngic---g------vgvaydskvagirmldq-----------pymtdlieansm 257 (629)
T KOG3526|consen 199 -YPRYTDDWFNSHGTRCAGEVVAARDNGIC---G------VGVAYDSKVAGIRMLDQ-----------PYMTDLIEANSM 257 (629)
T ss_pred -CCcccchhhhccCccccceeeeeccCCce---e------eeeeeccccceeeecCC-----------chhhhhhhhccc
Confidence 111122 578999999998776544433 2 49999999999999875 356677765322
Q ss_pred HHh-CCceEEEEccCCCCCCCCCcc---HHHHHHHHHHc-----CCcEEEEecCCCCCC
Q 004077 290 AIR-DGVHVLSISIGTNQPFAFNRD---GIAIGALNAVK-----HNILVACSAGNSGPA 339 (775)
Q Consensus 290 a~~-~gvdVIn~SlG~~~~~~~~~~---~~~~a~~~a~~-----~Gi~vV~AAGN~G~~ 339 (775)
--+ ..++|.+-|||..+.....+. ...+++-+-+. .|-++|.|.|..|.+
T Consensus 258 ghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 258 GHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 211 367999999998654333333 33334333333 356999999998854
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=174.26 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=78.4
Q ss_pred cceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC---CceEEEEccCCCCCC--CCCccHHHHHHHH
Q 004077 247 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD---GVHVLSISIGTNQPF--AFNRDGIAIGALN 321 (775)
Q Consensus 247 g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~--~~~~~~~~~a~~~ 321 (775)
..+.||||+|+|+.|+++++. ...++.++.+++.+ +++|||||||..... ....+.+..++.+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~------------~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~ 148 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV------------TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQ 148 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC------------ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHH
Confidence 346799999999999997532 34577888888887 999999999984221 1123567777888
Q ss_pred HHcCCcEEEEecCCCCCCCCC-----------CCCCCCceEEeccccccc
Q 004077 322 AVKHNILVACSAGNSGPAPSS-----------LSNLAPWLITVGAGSLDR 360 (775)
Q Consensus 322 a~~~Gi~vV~AAGN~G~~~~~-----------~~~~~p~vitVgAs~~~~ 360 (775)
|..+||+||+||||+|..... .+...|+|++||+++...
T Consensus 149 a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 149 AAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred HHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999999999976532 234569999999987654
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-11 Score=113.09 Aligned_cols=123 Identities=51% Similarity=0.825 Sum_probs=99.7
Q ss_pred eEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCc-chhhhhhHhhhcC
Q 004077 366 VVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSG-FKLSKGMEVKRAG 444 (775)
Q Consensus 366 ~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~k~~~~~~~G 444 (775)
++|+|++++.|++++.... ..+++++.... ........|.+..++..+++||||||+|+.| .+.+|..+++++|
T Consensus 2 i~LGng~~i~G~sl~~~~~-~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~G 76 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL-KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAG 76 (126)
T ss_pred EEeCCCCEEEEEEccCCCC-CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcC
Confidence 6789999999999997665 56677763321 1234557899988888999999999999999 9999999999999
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEE
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAI 493 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (775)
|.|+|++++.............+|.+.|+.++|..|++|++++.+++++
T Consensus 77 A~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 77 GAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 9999999986544333333468999999999999999999988766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=116.26 Aligned_cols=106 Identities=26% Similarity=0.344 Sum_probs=83.2
Q ss_pred cCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcccc-CCccccEEEEeHHHHHHHHHHHhcC
Q 004077 409 CLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIKIHEYIKST 487 (775)
Q Consensus 409 c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~-~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (775)
|...++...+++|||+||+|+.|.|.+|..+++.+||.++|++|+......... ....+|+++|+.++|..|.+|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 555566677899999999999999999999999999999999998653222211 135789999999999999999988
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 488 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 488 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
++++....+.. ..+.+.++.||||||+.
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 34444443333 45677899999999963
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=94.50 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=74.0
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC---cccc--CCccccEEEEeHHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN---EYSY--DAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~---~~~~--~~~~~p~~~i~~~~g~~l 480 (775)
...|.+.++...+++|||+||+||.|.|.+|.++++++||.++|++|+..... .... ....+|.++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47799988888899999999999999999999999999999999999865321 1111 345799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004077 481 HEYIKSTNNPTAI 493 (775)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (775)
++++..+.+++++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999988776654
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=94.86 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=74.9
Q ss_pred CCCCcCCCCC--CCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHH
Q 004077 405 ETNQCLPGSL--TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAI 478 (775)
Q Consensus 405 ~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~ 478 (775)
....|.+... ++.+++|+|+|++||.|.|.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578998877 56789999999999999999999999999999999999876222121 22357899999999999
Q ss_pred HHHHHHhcCCCceEEE
Q 004077 479 KIHEYIKSTNNPTAII 494 (775)
Q Consensus 479 ~l~~~~~~~~~~~~~i 494 (775)
.|++++..+.+++++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999988776653
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=91.49 Aligned_cols=89 Identities=22% Similarity=0.340 Sum_probs=72.8
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCC-Cccc-------cCCccccEEEEeHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-NEYS-------YDAHYLPATAVLYDDA 477 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-~~~~-------~~~~~~p~~~i~~~~g 477 (775)
...|.+... ..+++|+|+|++||.|.|.+|..+++++||.++|+||+.... .... .....||+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 568999999999999999999999999999999999976431 1111 2345899999999999
Q ss_pred HHHHHHHhcCCCceEEEE
Q 004077 478 IKIHEYIKSTNNPTAIIK 495 (775)
Q Consensus 478 ~~l~~~~~~~~~~~~~i~ 495 (775)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877653
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-08 Score=91.15 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=69.3
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc--cc--cCCccccEEEEeHHHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS--YDAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l 480 (775)
....|.+.++.+.+++|||+|++||+|+|.+|..+++.+||.++|+||+...... .. .....||+++|+.++|+.|
T Consensus 29 ~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i 108 (120)
T cd02129 29 SSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDI 108 (120)
T ss_pred CcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHH
Confidence 3467999998888999999999999999999999999999999999998652111 11 1346789999999999999
Q ss_pred HHHHhcC
Q 004077 481 HEYIKST 487 (775)
Q Consensus 481 ~~~~~~~ 487 (775)
.+.+.+.
T Consensus 109 ~~~l~~~ 115 (120)
T cd02129 109 QQTFGDS 115 (120)
T ss_pred HHHhccC
Confidence 9877643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.1e-08 Score=88.93 Aligned_cols=88 Identities=22% Similarity=0.275 Sum_probs=71.7
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIKI 480 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~l 480 (775)
....|.+.... .+++|||+||+|+.|.|.+|..+++++||.|+|++|+........ .....+|+++|+.++|..|
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 45679888874 469999999999999999999999999999999999865421111 1235799999999999999
Q ss_pred HHHHhcCCCceEE
Q 004077 481 HEYIKSTNNPTAI 493 (775)
Q Consensus 481 ~~~~~~~~~~~~~ 493 (775)
++|++.+..++++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999988766553
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-08 Score=89.72 Aligned_cols=86 Identities=26% Similarity=0.339 Sum_probs=69.7
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCC-----Cc--cc-----cCCccccEEEEe
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANG-----NE--YS-----YDAHYLPATAVL 473 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~-----~~--~~-----~~~~~~p~~~i~ 473 (775)
...|.+..+ +.+++|||+|++||.|+|.+|.++++++||.++|++|+.... .. .. .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 567999999999999999999999999999999999875432 11 11 124689999999
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004077 474 YDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (775)
..+|+.|++++..+..+++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999998876654
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=89.02 Aligned_cols=79 Identities=32% Similarity=0.450 Sum_probs=64.3
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC----CCCccccCCccccEEEEeHHHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA----NGNEYSYDAHYLPATAVLYDDAIKIH 481 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 481 (775)
...|.+..+...+++||||||+||.|+|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45577778889999999999999999999999999999999999999211 11223345689999999999999999
Q ss_pred HHH
Q 004077 482 EYI 484 (775)
Q Consensus 482 ~~~ 484 (775)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.9e-08 Score=88.03 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=70.4
Q ss_pred CCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc--c--ccCCccccEEEEeHHHHHHHHH
Q 004077 407 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--Y--SYDAHYLPATAVLYDDAIKIHE 482 (775)
Q Consensus 407 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 482 (775)
..|.+.++ +.+++|||+|++||.|.|.+|.++++++||.++|+||+...+.. . ..+...+|.++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46877655 35799999999999999999999999999999999998632211 1 1234679999999999999999
Q ss_pred HHhcCCCceEE
Q 004077 483 YIKSTNNPTAI 493 (775)
Q Consensus 483 ~~~~~~~~~~~ 493 (775)
.+.++.+++++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99998877654
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.4e-08 Score=88.64 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCcCCCC--CCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc-c-----cCCccccEEEEeHHH
Q 004077 405 ETNQCLPGS--LTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-S-----YDAHYLPATAVLYDD 476 (775)
Q Consensus 405 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 476 (775)
....|.++. +...+++|||+||+|+.|.|.+|..+++++||.|+|++++....... . .....+|+++|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345688887 77889999999999999999999999999999999999987532111 1 134679999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 004077 477 AIKIHEYIKSTNNPTA 492 (775)
Q Consensus 477 g~~l~~~~~~~~~~~~ 492 (775)
|..|++|+.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998766554
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-08 Score=83.00 Aligned_cols=76 Identities=34% Similarity=0.486 Sum_probs=54.6
Q ss_pred eEEEEecCCCCCCcccchhhhhHHHHHHHhhCCc----hhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEec
Q 004077 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNE----EEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPS 98 (775)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~ 98 (775)
+|||.|+++.. .......|.+++.+++.+. .....++.+.|+..||||+++++++++++|++ +|++|+||
T Consensus 1 ~YIV~~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D 76 (82)
T PF05922_consen 1 RYIVVFKDDAS----AASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPD 76 (82)
T ss_dssp EEEEEE-TTST----HHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEE
T ss_pred CEEEEECCCCC----cchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeC
Confidence 69999999873 2334566777776554321 23356899999999999999999999999999 99999999
Q ss_pred CCCccccc
Q 004077 99 HPEKYSLQ 106 (775)
Q Consensus 99 ~~~~~~~~ 106 (775)
+ .++++
T Consensus 77 ~--~v~l~ 82 (82)
T PF05922_consen 77 Q--VVSLH 82 (82)
T ss_dssp C--EEEE-
T ss_pred c--eEecC
Confidence 9 77653
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-07 Score=88.41 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=68.7
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc------cCCccccEEEEeHHHHHH
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS------YDAHYLPATAVLYDDAIK 479 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 479 (775)
...|.+.. .+++|||+|++||.|+|.+|.++++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788764 378999999999999999999999999999999999764321111 113589999999999999
Q ss_pred HHHHHhcCCCceE
Q 004077 480 IHEYIKSTNNPTA 492 (775)
Q Consensus 480 l~~~~~~~~~~~~ 492 (775)
|++++..+.++++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998877654
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=86.28 Aligned_cols=88 Identities=15% Similarity=0.169 Sum_probs=69.4
Q ss_pred CCCcCCCCCC--CC----ceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc-c----------ccCCcccc
Q 004077 406 TNQCLPGSLT--PE----KVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-Y----------SYDAHYLP 468 (775)
Q Consensus 406 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~p 468 (775)
...|.+.... +. ...++|+|++||+|.|.+|..+++++||.++|++|+.+.... . ......||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578776543 22 378899999999999999999999999999999998653211 0 11234799
Q ss_pred EEEEeHHHHHHHHHHHhcCCCceEE
Q 004077 469 ATAVLYDDAIKIHEYIKSTNNPTAI 493 (775)
Q Consensus 469 ~~~i~~~~g~~l~~~~~~~~~~~~~ 493 (775)
+++|+..+|+.|++.+..+..++++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988876654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.8e-07 Score=87.21 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=61.6
Q ss_pred CCCCCceeceEEEEecCCcc-----hhhhhhHhhhcCceEEEEecCCCC-CC---cccc--CCccccEEEEeHHHHHHHH
Q 004077 413 SLTPEKVKGKIVLCMRGSGF-----KLSKGMEVKRAGGVGLILGNSPAN-GN---EYSY--DAHYLPATAVLYDDAIKIH 481 (775)
Q Consensus 413 ~~~~~~~~gkivl~~~g~~~-----~~~k~~~~~~~Ga~g~i~~n~~~~-~~---~~~~--~~~~~p~~~i~~~~g~~l~ 481 (775)
++...+++|||+|++||.|. |.+|.++++++||.++|+||+... +. .+.. ...+||+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45566899999999999999 999999999999999999999732 21 1111 1468999999999999999
Q ss_pred HHHhcC
Q 004077 482 EYIKST 487 (775)
Q Consensus 482 ~~~~~~ 487 (775)
..+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987554
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.6e-07 Score=84.67 Aligned_cols=89 Identities=19% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHH
Q 004077 404 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHE 482 (775)
Q Consensus 404 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~ 482 (775)
.....|.+...+..+++|||+|++||.|.|.+|.++++++||.++|+||+...... ...+...+|...+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34568998766666899999999999999999999999999999999998653221 1222334565555 999999999
Q ss_pred HHhcCCCceEE
Q 004077 483 YIKSTNNPTAI 493 (775)
Q Consensus 483 ~~~~~~~~~~~ 493 (775)
.+..+..++++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99888766554
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=79.81 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=61.6
Q ss_pred eEeecCCceEEEEEEEEecCCCCeEEEEEeeC--------CCCc-----------EEEEecceEEEccCCcEEEEEEEEE
Q 004077 678 IAIPNLNGTVIVKRTVTNVGGSKSVYFFSAKP--------PMGV-----------SVKANPSILFFDHIGQKKSFTITVR 738 (775)
Q Consensus 678 ~~~~~~~~~~t~~~tv~n~~~~~~ty~~~~~~--------~~g~-----------~~~v~p~~~~~~~~~~~~~~~v~~~ 738 (775)
|++++.....+++++|+|.|+++.+|+++... ..|. .+...|..+++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 34566666789999999999999999998761 1111 45666778888 6799999999999
Q ss_pred ECcccccccCCCceEEEEEEEECC-c-cEEEeEEE
Q 004077 739 LGSETTRQGLTKQYVFGWYRWTDG-L-HLVRSPMA 771 (775)
Q Consensus 739 ~~~~~~~~~~~~~~~~g~~~~~~~-~-~~v~~P~~ 771 (775)
.+.. ....++.+++|+|.+++. . +.+++||+
T Consensus 80 ~p~~--~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSG--LDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GG--GHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhc--CCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 9532 122557899999999963 4 58999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=83.17 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC--ccc----cCCccccEEEEeHHHHH
Q 004077 405 ETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN--EYS----YDAHYLPATAVLYDDAI 478 (775)
Q Consensus 405 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~--~~~----~~~~~~p~~~i~~~~g~ 478 (775)
....|.+. +..+++|||+|++||+|+|.+|..+++++||.++|++|+..... ... .....+|+++|+.+++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 34679766 56889999999999999999999999999999999998765321 111 23458999999999999
Q ss_pred HHHHHHhcC
Q 004077 479 KIHEYIKST 487 (775)
Q Consensus 479 ~l~~~~~~~ 487 (775)
+|..++...
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999876554
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.1e-07 Score=85.06 Aligned_cols=84 Identities=24% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCCcCCCCCCC---CceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC-cccc-----CCccccEEEEeHHH
Q 004077 406 TNQCLPGSLTP---EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN-EYSY-----DAHYLPATAVLYDD 476 (775)
Q Consensus 406 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~-~~~~-----~~~~~p~~~i~~~~ 476 (775)
...|.+....+ .++.|+|+|++||+|+|.+|..+++++||.++|++|+..... .... ....||+++|+.++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 46798777644 789999999999999999999999999999999999865321 1111 24589999999999
Q ss_pred HHHHHHHHhcCCC
Q 004077 477 AIKIHEYIKSTNN 489 (775)
Q Consensus 477 g~~l~~~~~~~~~ 489 (775)
|..|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987754
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.5e-06 Score=91.10 Aligned_cols=76 Identities=18% Similarity=0.081 Sum_probs=57.8
Q ss_pred EEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCC
Q 004077 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 559 ~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
.-..|||.++|+.||+.+|.++++|.++..++..+...++......................+|+|++|+..-+..
T Consensus 250 e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 250 EGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred ccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhh
Confidence 3456999999999999999999999999999999999999876543333222222233455799999998776653
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.5e-06 Score=97.08 Aligned_cols=95 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc-eEEEEccCCCC--CCCC--CccHHHHHHHHHH
Q 004077 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV-HVLSISIGTNQ--PFAF--NRDGIAIGALNAV 323 (775)
Q Consensus 249 ~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~--~~~~--~~~~~~~a~~~a~ 323 (775)
..-+||.|+|..|-.-. .....+..|+.+....=+ -+|-.||+... ...+ .-+.+......|.
T Consensus 288 s~A~AP~A~I~lvvap~------------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 288 SHAMAPKANIDLVVAPN------------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred hhccCccCceEEEEcCC------------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 45789999999987721 122223333333222111 33445666521 1122 2234455556788
Q ss_pred cCCcEEEEecCCCCCCCCC--------CCCCCCceEEecc
Q 004077 324 KHNILVACSAGNSGPAPSS--------LSNLAPWLITVGA 355 (775)
Q Consensus 324 ~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 355 (775)
.+||.+++|+|.+|....+ .+..+|++++||-
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999866543 2335699999996
|
|
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-05 Score=73.25 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=63.1
Q ss_pred CCCCCceeceEEEEecCCc--chhhhhhHhhhcCceEEEEecCCCCCCcc-----c--cCCccccEEEEeHHHHHHHHHH
Q 004077 413 SLTPEKVKGKIVLCMRGSG--FKLSKGMEVKRAGGVGLILGNSPANGNEY-----S--YDAHYLPATAVLYDDAIKIHEY 483 (775)
Q Consensus 413 ~~~~~~~~gkivl~~~g~~--~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 483 (775)
++...+++|||||++++.+ .+.+|.+++.++||.|+|++|+....... . .....+|++.|+.++|+.|.+.
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 4446679999999999999 88999999999999999999875442211 1 2245799999999999999999
Q ss_pred HhcCCCc
Q 004077 484 IKSTNNP 490 (775)
Q Consensus 484 ~~~~~~~ 490 (775)
++.+...
T Consensus 117 l~~g~~~ 123 (127)
T cd04819 117 AERNDTL 123 (127)
T ss_pred HhcCCce
Confidence 9876543
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00023 Score=66.66 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=62.8
Q ss_pred CCCCceeceEEEEecCCc------chhhh-------hhHhhhcCceEEEEecCCC-------CCCccc-cCCccccEEEE
Q 004077 414 LTPEKVKGKIVLCMRGSG------FKLSK-------GMEVKRAGGVGLILGNSPA-------NGNEYS-YDAHYLPATAV 472 (775)
Q Consensus 414 ~~~~~~~gkivl~~~g~~------~~~~k-------~~~~~~~Ga~g~i~~n~~~-------~~~~~~-~~~~~~p~~~i 472 (775)
+...+++|||||+.++.| .|..| .+.++++||.++|++|... .+.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 346689999999999999 89888 6999999999999998532 221111 22357999999
Q ss_pred eHHHHHHHHHHHhcCCCceE
Q 004077 473 LYDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 473 ~~~~g~~l~~~~~~~~~~~~ 492 (775)
+.+++..|...++.+..+++
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765544
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0012 Score=64.39 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=57.2
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC------------------CCcc-----------c--c--
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN------------------GNEY-----------S--Y-- 462 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~------------------~~~~-----------~--~-- 462 (775)
..+++|||+|+++|.|.+.+|.++|+++||+|+|+|++..+ |..+ . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 46899999999999999999999999999999999998421 0000 0 0
Q ss_pred -CCccccEEEEeHHHHHHHHHHHhcC
Q 004077 463 -DAHYLPATAVLYDDAIKIHEYIKST 487 (775)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (775)
....||++-|+..++..|++.+.-.
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1246899999999999999987543
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0018 Score=70.34 Aligned_cols=82 Identities=22% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC------CCccccCCccccEEEEeHHHHHHHHHHHhcCCC
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN------GNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNN 489 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 489 (775)
..++++|++++.||.|.|.+|.+.++++||.++++.|+..+ ++.....+..||..+|++++++.+.+....+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45789999999999999999999999999999999998442 222334467999999999999999998777777
Q ss_pred ceEEEEec
Q 004077 490 PTAIIKQA 497 (775)
Q Consensus 490 ~~~~i~~~ 497 (775)
+++.+...
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 77666543
|
|
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0033 Score=58.94 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCc------------------chhhhhhHhhhcCceEEEEecCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSG------------------FKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
...|...++...|++|||||+.|+.| .+..|.+.++++||.|+|++++..
T Consensus 33 a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 33 APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 35688889999999999999999877 477899999999999999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.005 Score=57.38 Aligned_cols=50 Identities=26% Similarity=0.343 Sum_probs=43.5
Q ss_pred CCCcCCCCCCCCceeceEEEEecCCcc------------hhhhhhHhhhcCceEEEEecCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGSGF------------KLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
...|...++...+++|||||+.++.|. +..|.+++.++||.|+|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356888888889999999999998863 67899999999999999999854
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0068 Score=57.56 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=43.3
Q ss_pred CCCcCCCCCCCCceeceEEEEecCC------------------cchhhhhhHhhhcCceEEEEecCCCC
Q 004077 406 TNQCLPGSLTPEKVKGKIVLCMRGS------------------GFKLSKGMEVKRAGGVGLILGNSPAN 456 (775)
Q Consensus 406 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~k~~~~~~~Ga~g~i~~n~~~~ 456 (775)
...|...++...+++|||||+.|+. |.+..|..+++++||.|+|+|++...
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4557777888899999999998874 56788999999999999999998643
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.48 Score=41.80 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=60.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEECCcc
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTDGLH 764 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 764 (775)
...+.+++|+|.+..+..|++.........++++|..-.+ ++|++.++.|++... ...+.+ .+.|...-...
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~------~~~g~~-~~~l~i~~e~~ 91 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPT------KPLGDY-EGSLVITTEGG 91 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeC------CCCceE-EEEEEEEECCe
Confidence 4577888999999999999998654334556777766555 679999999999952 234444 68887775556
Q ss_pred EEEeEEEEEe
Q 004077 765 LVRSPMAVSF 774 (775)
Q Consensus 765 ~v~~P~~~~~ 774 (775)
.+.+|+-.+.
T Consensus 92 ~~~i~v~a~~ 101 (102)
T PF14874_consen 92 SFEIPVKAEV 101 (102)
T ss_pred EEEEEEEEEE
Confidence 7888876654
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.018 Score=54.04 Aligned_cols=39 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 417 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 417 ~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
.+++|||+|++.|...+-.|.+++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999999999999999999999999854
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.12 Score=43.33 Aligned_cols=64 Identities=30% Similarity=0.296 Sum_probs=39.1
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCce
Q 004077 685 GTVIVKRTVTNVGGSK-SVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 752 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~-~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 752 (775)
.+.+++++|+|.|..+ ...++++..|.|-.+...|..+.--++|++++++++|+++ .....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp----~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVP----ADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-----TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECC----CCCCCceE
Confidence 4678999999999754 5578888889999977778777544789999999999996 24444554
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.026 Score=52.25 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc------c----cCCccccEEEEe
Q 004077 404 NETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY------S----YDAHYLPATAVL 473 (775)
Q Consensus 404 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~------~----~~~~~~p~~~i~ 473 (775)
....+|.... +.-...+.++|++||+|+|..|..+++++||.++|+.++.....+. . .+...+|+.++-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3456776532 3456788999999999999999999999999999998875443221 2 234678999998
Q ss_pred HHHHHHHHHHHhcCCCceE
Q 004077 474 YDDAIKIHEYIKSTNNPTA 492 (775)
Q Consensus 474 ~~~g~~l~~~~~~~~~~~~ 492 (775)
..+|.-+..-+......-+
T Consensus 151 g~~Gy~ir~sL~r~~r~ha 169 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHA 169 (193)
T ss_pred ccceEEEehhHHHhCCccE
Confidence 8888766665554443333
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.028 Score=56.93 Aligned_cols=40 Identities=40% Similarity=0.499 Sum_probs=37.1
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
..+++|||||+++|.+.+..|.++++++||.|+|+|++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 5689999999999999889999999999999999999854
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.078 Score=56.79 Aligned_cols=81 Identities=19% Similarity=0.116 Sum_probs=63.0
Q ss_pred CCcCCCCC---CCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEEeHHHHHH
Q 004077 407 NQCLPGSL---TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAVLYDDAIK 479 (775)
Q Consensus 407 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 479 (775)
.+|.+... ........++|+.||+|+|.+|..+++++|..++|+||+........ .....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 24556778999999999999999999999999999999866553322 334688999999999999
Q ss_pred HHHHHhcC
Q 004077 480 IHEYIKST 487 (775)
Q Consensus 480 l~~~~~~~ 487 (775)
|.+|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 99875433
|
|
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=91.60 E-value=4.9 Score=36.45 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECc
Q 004077 687 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 741 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~ 741 (775)
-.+++.|.|....+.+|++++..++|+.+......+.+ ++|++..+.|.+..+.
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 46889999999999999999998889998555578888 6799999999999863
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.51 Score=45.28 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCCCCCceeceEEEEecCCcch-------------------hhhhhHhhhcCceEEEEecCC
Q 004077 412 GSLTPEKVKGKIVLCMRGSGFK-------------------LSKGMEVKRAGGVGLILGNSP 454 (775)
Q Consensus 412 ~~~~~~~~~gkivl~~~g~~~~-------------------~~k~~~~~~~Ga~g~i~~n~~ 454 (775)
.++...|++||||++.++...+ ..|.+.+.+.||.|+|++++.
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 3667889999999999765533 248999999999999999874
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.47 E-value=4.8 Score=44.64 Aligned_cols=71 Identities=13% Similarity=0.158 Sum_probs=57.6
Q ss_pred ceEEEEEEEEecCCCCeE-EEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCceEEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGWYRWT 760 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~t-y~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 760 (775)
.+.++...+.|.|+.+.| -++++..|.|-++.|.|.++..-++|+.+++++|++++ ..+..+.| +-+|+-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP----~~a~aGdY-~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP----EDAGAGDY-RITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC----CCCCCCcE-EEEEEEe
Confidence 457888999999987755 47889999999999999977665789999999999997 46677777 4555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 775 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-115 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 2e-99 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 3e-07 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 3e-05 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 4e-04 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 4e-04 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 6e-04 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 6e-04 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 6e-04 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 6e-04 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 7e-04 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 7e-04 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 662 bits (1708), Expect = 0.0
Identities = 248/677 (36%), Positives = 357/677 (52%), Gaps = 69/677 (10%)
Query: 107 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 166
TTRSW+F+G + +++ +++VG++D G+WPES SF DEG P
Sbjct: 1 TTRSWDFLGFP-------------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSP 47
Query: 167 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 226
P WKG C+T F CN+KIIGAR Y G + D PRD +GHGTHT
Sbjct: 48 PPPKWKGTCETSNNFR---CNRKIIGARSYHIGRP------ISPGDVNGPRDTNGHGTHT 98
Query: 227 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286
AST AG V A+ +G GTA GG PLAR+A YK CW + C + D+LAA
Sbjct: 99 ASTAAGGLVSQANLYG-LGLGTARGGVPLARIAAYKVCWN---------DGCSDTDILAA 148
Query: 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 346
DDAI DGV ++S+S+G P + D IAIG+ +AV+ IL + SAGN GP + ++L
Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208
Query: 347 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNET 406
+PWL++V A ++DR FV V +G G G ++ ++ + +PLV D+ G ++ +
Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTS 267
Query: 407 NQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHY 466
C S+ P +KGKIV+C G K G +L + D++
Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPH----EFFKSLDGAAGVL---MTSNTRDYADSYP 320
Query: 467 LPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526
LP++ + +D + YI S +P A I ++ T+ AP + +F+SRGPN ++K
Sbjct: 321 LPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDVIK 379
Query: 527 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 586
PDI+ PG+ ILAAW + +R + I SGTSMSCPH+ A +K +P WS
Sbjct: 380 PDISGPGVEILAAWPSVAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWS 436
Query: 587 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYL 646
AAI+SALMTTA N + P F++GSGH P KA PGLVYDA+ DY+
Sbjct: 437 PAAIKSALMTTASPMNARFNP--------QAEFAYGSGHVNPLKAVRPGLVYDANESDYV 488
Query: 647 LYLCSHGFS------FTNPVFRCPN-KPPSALNLNYPSIAI---PNLNGTVIVKRTVTNV 696
+LC G++ T C + +LNYPS + P+ RT+T+V
Sbjct: 489 KFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSV 548
Query: 697 GGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQYVFGW 756
S Y P G+++ NP++L F+ +G +KSFT+TV R + V
Sbjct: 549 APQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV-------RGSIKGFVVSAS 601
Query: 757 YRWTDGLHLVRSPMAVS 773
W+DG+H VRSP+ ++
Sbjct: 602 LVWSDGVHYVRSPITIT 618
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 659 bits (1700), Expect = 0.0
Identities = 244/683 (35%), Positives = 348/683 (50%), Gaps = 56/683 (8%)
Query: 107 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGP 166
TT + +F+ L+ L + GQDVIV ++D+G+WPES SF D+GM
Sbjct: 1 TTHTSDFLKLNP-----------SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPE 49
Query: 167 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 226
+PK WKGIC+ G FN+S+CN+K+IGA Y+ KG +N S RD DGHGTH
Sbjct: 50 IPKRWKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVN--ITMNSARDTDGHGTHC 107
Query: 227 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286
AS AG S F G+A GTA G AP ARLA+YK + F +D++AA
Sbjct: 108 ASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSF---------NEGTFTSDLIAA 157
Query: 287 IDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 346
+D A+ DGV ++SIS G + D I+I + A+ +LV+ SAGN GP SL+N
Sbjct: 158 MDQAVADGVDMISISYGYRFIPLYE-DAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216
Query: 347 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLK-KMHPLVYAADVVVPGVHQNE 405
+PW++ V +G DR F G + LG G++I G ++ P + P++Y +
Sbjct: 217 SPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL--------S 268
Query: 406 TNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAH 465
E + IV+C F + + RA I + + +
Sbjct: 269 DCSSEELLSQVENPENTIVICDDNGDFS-DQMRIITRARLKAAIFISE--DPGVFRSATF 325
Query: 466 YLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL 525
P V + ++ Y+K++ PTA I T L T+PAP +A ++RGP+ I
Sbjct: 326 PNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGIS 385
Query: 526 KPDITAPGLNILAAWSEASSPSKLAFD-KRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 584
KPDI APG+ ILAA+ + + + Y + SGTSM+ PH A AA+LKA HP+
Sbjct: 386 KPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPE 445
Query: 585 WSSAAIRSALMTTAWMKNNKALPITNAD-GSIATPFSFGSGHFRPTKAADPGLVYDASYE 643
WS +AIRSA+MTTA +N PI ++D ATP G+GH P +A DPGLVYDA+ +
Sbjct: 446 WSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQ 505
Query: 644 DYLLYLCSHGFSFTNPVF-----RCPNKPPSALNLNYPS-IAIPNLNG-----TVIVKRT 692
DY+ LCS F+ N + +LNYPS IA+ ++ G KRT
Sbjct: 506 DYVNLLCSLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRT 565
Query: 693 VTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQY 752
VTNVG + Y K P ++ +P IL F + +K+S+T+T+ +
Sbjct: 566 VTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI-----RYIGDEGQSR 620
Query: 753 VFGWYRWT--DGLHLVRSPMAVS 773
G W +G H VRSP+ S
Sbjct: 621 NVGSITWVEQNGNHSVRSPIVTS 643
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 478 bits (1231), Expect = e-156
Identities = 122/652 (18%), Positives = 204/652 (31%), Gaps = 88/652 (13%)
Query: 131 QDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNS----SLC 186
+ L KA G +V ++D G +++ K + +
Sbjct: 7 KTLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV 66
Query: 187 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 246
N K+ Y D HGTH + ++G NA +
Sbjct: 67 NDKVAYYHDY--------------SKDGKTAVDQEHGTHVSGILSG----NAPSET-KEP 107
Query: 247 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG-TN 305
G P A+L + + G + + AI DAI G V+++S G
Sbjct: 108 YRLEGAMPEAQLLLMRVEIVN-------GLADYARNYAQAIRDAINLGAKVINMSFGNAA 160
Query: 306 QPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS---NLAPWLITVGAGSLDRDF 362
+A D A + + SAGN P VG +
Sbjct: 161 LAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220
Query: 363 VGPVVLGTGMEIIGKTV--TPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVK 420
+ ++ T K P++ + + VK
Sbjct: 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVK 280
Query: 421 GKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSY-DAHYLPATAVLYDDAIK 479
GKI L RG K + K+AG VG+++ ++ G + +PA + D +
Sbjct: 281 GKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLL 340
Query: 480 IHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAA 539
+ + + T A VL T ++ F+S G A +KPDI APG +IL++
Sbjct: 341 LKDNPQKTITFNA----TPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSS 394
Query: 540 WSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599
+ Y SGTSMS P VA LL+ + S + A
Sbjct: 395 VANNK-------------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAK 441
Query: 600 -MKNNKALPITNADG-SIATPFSFGSGHFRPTKAADPGL-VYDASYEDYLLYLC--SHGF 654
+ + A + + D + +P G+G KA+ + V D ++L S F
Sbjct: 442 KVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATMYVTDKDNTSSKVHLNNVSDKF 501
Query: 655 SFTNPVFRCPNKPPSALNLNYPSIAI-PNLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGV 713
T NK L Y + ++G S +
Sbjct: 502 EVT---VNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQK----------I 548
Query: 714 SVKANPSILFFDHIGQKKSFTITV---RLGSETTRQGLTKQYVFGWYRWTDG 762
++ A K T+ + R + Q ++ G+ R+
Sbjct: 549 TIPA----------NSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQD 590
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-24
Identities = 68/416 (16%), Positives = 133/416 (31%), Gaps = 93/416 (22%)
Query: 210 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPK 269
T + P + + HGTH A T+A + N G A + I K
Sbjct: 53 TGNWYQPGNNNAHGTHVAGTIAA--IANNEGVVGVMPNQN------ANIHIVKVF----- 99
Query: 270 ASKAAGNTCFEADMLAAIDDAIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNIL 328
G + + ++AAID + G +V+++S+G + R+ + + +L
Sbjct: 100 NEAGWGYS---SSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVL 152
Query: 329 VACSAGNSGPA----PSSLSNLAPWLITVGA-GSLDR-----------DFVGPVVLGTGM 372
+ +AGN+G + P+S +++V A S + GP G +
Sbjct: 153 LIAAAGNAGDSSYSYPAS----YDSVMSVAAVDSNLDHAAFSQYTDQVEISGP---GEAI 205
Query: 373 --EIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGS 430
+ ++ GV + S P + +
Sbjct: 206 LSTVTVGEGRLADITIG-----GQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAEC 260
Query: 431 GFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAI--------KIHE 482
+ A + L+ + ++ TA + +
Sbjct: 261 TVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNP 320
Query: 483 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 542
++ N+ + + A +A G + ++ G
Sbjct: 321 FLVDANSDITV-----PSVSVDRATGLALKAKLGQS--------TTVSNQGNQ------- 360
Query: 543 ASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
Y ++GTSM+ PHV+ A L+ + HP+ S++ +R+AL TA
Sbjct: 361 --------------DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-22
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+ +F+SRGP A LKP++ APG I+AA + +S + D YT GT+M+
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMAT 362
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRP 628
PHVA AALL HP W+ +++AL+ TA ++G+G
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA----------DIVKPDEIADIAYGAGRVNA 412
Query: 629 TKAADPGLVYDASYEDYL 646
KAA ++ Y+
Sbjct: 413 YKAAYYDNYAKLTFTGYV 430
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 65/359 (18%), Positives = 121/359 (33%), Gaps = 93/359 (25%)
Query: 11 LLTLLASSAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK 70
L + + Q+ I+ F + EKA + + A Y+Y
Sbjct: 23 LFKKVQRMSWDQEVSTIIMFDNQADKEKA---------------VEILDFLGAKIKYNYH 67
Query: 71 HSINGFSAVLTPDEAARLSEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAK-------QN 123
I + + + ++ + + + +F+ D V K +
Sbjct: 68 I-IPALAVKIKVKDLLIIAGLMDT------GYFGNAQLSGVQFIQEDYVVKVAVETEGLD 120
Query: 124 WNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 182
+ + + Y G + +G++D G+
Sbjct: 121 ESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--------------------- 159
Query: 183 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 242
K+IG + +P D +GHGTH AS AG G
Sbjct: 160 ------KVIGWV-------------DFVNGKTTPYDDNGHGTHVASIAAGT--------G 192
Query: 243 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID----DAIRDGVHVL 298
+ G G AP A+L K + +D++ +D + + G+ V+
Sbjct: 193 AASNGKYKGMAPGAKLVGIKVL--------NGQGSGSISDIINGVDWAVQNKDKYGIKVI 244
Query: 299 SISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGA 355
++S+G++Q D ++ NA ++V +AGNSGP ++ + A +ITVGA
Sbjct: 245 NLSLGSSQSSDGT-DSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 3e-21
Identities = 39/167 (23%), Positives = 61/167 (36%), Gaps = 44/167 (26%)
Query: 440 VKRAGGVGLIL----GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIK 495
V A G+++ GNS + Y P P AI
Sbjct: 153 VNYAYSKGVLIVAAAGNSGYSQGTIGY-----PGAL------------------PNAIAV 189
Query: 496 QARTVLHTQPAPFMANFTSRGPNALDPYIL----KPDITAPGLNILAAWSEASSPSKLAF 551
A + +A+++SRG + + +I+APG ++ + W
Sbjct: 190 AALENVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------- 241
Query: 552 DKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
Y SGTSM+ PHV+ AA + A +P S+ +RS L A
Sbjct: 242 -----GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 1e-13
Identities = 42/201 (20%), Positives = 68/201 (33%), Gaps = 32/201 (15%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
T + S D +GHGTH A T + + G G AP A L YK
Sbjct: 57 ATTPINNSCTDRNGHGTHVAGTALADGGSDQA-------GIY-GVAPDADLWAYKVL--- 105
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVH-----VLSISIGTNQPFAFNRDGIAIGALNA 322
+ + D+ AAI A ++S+S+G++ + + A
Sbjct: 106 -----LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YA 156
Query: 323 VKHNILVACSAGNSGPAPSSLSNLA--PWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380
+L+ +AGNSG + ++ P I V A L+ G T
Sbjct: 157 YSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA--LENVQQNGTYRVADYSSRGYIST 214
Query: 381 PYNLKKMHPLVYAADVVVPGV 401
+ + ++ PG
Sbjct: 215 AGDYVIQEGDI---EISAPGS 232
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 5e-21
Identities = 46/233 (19%), Positives = 75/233 (32%), Gaps = 39/233 (16%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+ +TSR P + APG I + + SK + +GTSM+
Sbjct: 419 VYTWTSRDPCID--GGQGVTVCAPGGAIASVP--QFTMSK---------SQLMNGTSMAA 465
Query: 569 PHVAAAAAL----LKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSG 624
PHVA A AL LK + ++S +I+ A+ T A + D PF+ G G
Sbjct: 466 PHVAGAVALLISGLKQQNIEYSPYSIKRAISVT-------ATKLGYVD-----PFAQGHG 513
Query: 625 HFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPNLN 684
KA + + S ++ L F+ V +K + N+
Sbjct: 514 LLNVEKAFEHLTEHRQSKDNML--------RFSVRVGNNADKGIHLRQGVQRNSIDYNVY 565
Query: 685 GTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITV 737
I K + + L + +S + V
Sbjct: 566 IEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSY--GTRSIAVRV 616
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 25/161 (15%)
Query: 204 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 263
+ HGTH +S +G + G AP A++
Sbjct: 254 VNVHDEGNVLEVVGMSSPHGTHVSSIASGN---------HSSRDVD-GVAPNAKIVSMTI 303
Query: 264 CWATPKASKAAGNTCFEADMLAAIDDAI-----RDGVHVLSISIGTNQPFAFNRDGIAIG 318
G+ ++ A+ + + V+++S G + ++ + +
Sbjct: 304 G------DGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELM 357
Query: 319 ALNAVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGA 355
K+ ++ SAGN GPA ++ P LI VGA
Sbjct: 358 NEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGA 398
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 1e-19
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 21/90 (23%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F+S GP + D+ APG++I + KY ++GTSM+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHVA AAAL+ + HP+W++ +RS+L T
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTT 254
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 27/153 (17%)
Query: 208 NATEDDRSP-RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 266
+ + +P +D + HGTH A TVA + G G AP A L K
Sbjct: 49 SMVPSETNPFQDNNSHGTHVAGTVAAL---------NNSIGVL-GVAPSASLYAVKVL-- 96
Query: 267 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHN 326
+ +G + ++ I+ AI + + V+++S+G A + + AV
Sbjct: 97 ---GADGSGQY---SWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD----KAVASG 146
Query: 327 ILVACSAGNSGPAPSSLSNL----APWLITVGA 355
++V +AGN G + SS + P +I VGA
Sbjct: 147 VVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA 179
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 21/90 (23%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F+S G + ++ APG + + + + Y +GTSM+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTNT-------------YATLNGTSMAS 223
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHVA AAAL+ + HP+ S++ +R+ L +TA
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTA 253
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 5e-17
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 26/152 (17%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ + D +GHGTH A TVA G G AP L K
Sbjct: 49 SFVAGEAYNTDGNGHGTHVAGTVAAL---------DNTTGVL-GVAPSVSLYAVKVL--- 95
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 327
S +G+ + +++ I+ A +G+ V+++S+G + + NA +
Sbjct: 96 --NSSGSGSY---SGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVD----NAYARGV 146
Query: 328 LVACSAGNSGPAPSSLSNL----APWLITVGA 355
+V +AGNSG + S+ + +I VGA
Sbjct: 147 VVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA 178
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 3e-19
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 21/90 (23%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F+ G DI APG+N+ + + ++ Y +GTSM+
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGST-------------YASLNGTSMAT 218
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHVA AAAL+K +P WS+ IR+ L TA
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 22/148 (14%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ + S +D +GHGTH A T+A + G G AP A L K
Sbjct: 48 SFVPGEPSTQDGNGHGTHVAGTIAAL---------NNSIGVL-GVAPSAELYAVKVL--- 94
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 327
+ +G+ + + ++ A +G+HV ++S+G+ P A + +A +
Sbjct: 95 --GASGSGSV---SSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGV 145
Query: 328 LVACSAGNSGPAPSSLSNLAPWLITVGA 355
LV ++GNSG S + VGA
Sbjct: 146 LVVAASGNSGAGSISYPARYANAMAVGA 173
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 5e-17
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 17/216 (7%)
Query: 140 GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKG 199
+ + ++D F + V W + + I KG
Sbjct: 48 DPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRDQGL--KG 104
Query: 200 FEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLA 259
E+ D + ++ H H ST+ G+ G AP R+
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE----------HSPVF-GIAPNCRVI 153
Query: 260 IYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGA 319
+ ++ AID A+ G +++ + + + +
Sbjct: 154 NMPQDAVIRGNYDDVMSP---LNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAI 210
Query: 320 LNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
+N+L+ GN+ L + P + VGA
Sbjct: 211 KKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGA 246
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 21/94 (22%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+F++ G N K I APG IL A +GTSM+
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQPCTEE------------PVRLTGTSMAA 295
Query: 569 PHVAAAAALLKAIH----PDWSSAAIRSALMTTA 598
P + +ALL ++ + A+R+AL+ TA
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 5e-17
Identities = 46/190 (24%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 451 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 510
GN NG S A V + ++ + N +A
Sbjct: 161 GNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINH-----------------VA 203
Query: 511 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPH 570
F+SRGP +KPD+ APG IL+A S + S + KY GTSM+ P
Sbjct: 204 QFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHD-SKYAYMGGTSMATPI 260
Query: 571 VAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATP-FSFGSGHFRPT 629
VA A L+ + +L+ AL AD + P + G G
Sbjct: 261 VAGNVAQLREHFVKNRGITPKPSLLKA-------ALIAGAADIGLGYPNGNQGWGRVTLD 313
Query: 630 KAADPGLVYD 639
K+ + V +
Sbjct: 314 KSLNVAYVNE 323
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 9e-14
Identities = 37/163 (22%), Positives = 56/163 (34%), Gaps = 23/163 (14%)
Query: 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGG-APLARLAIYKACWATPKA 270
+ D +GHGTH A +V G G+ + G AP A L
Sbjct: 58 RTNNANDTNGHGTHVAGSVLGN-------------GSTNKGMAPQANLVFQSIM------ 98
Query: 271 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 330
G +++ A G + + S G A+ D + K+++ +
Sbjct: 99 DSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTIL 157
Query: 331 CSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVLGTG 371
+AGN GP ++S A ITVGA R G
Sbjct: 158 FAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNIN 200
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 5e-17
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIV-----KYTIFSG 563
+A F+SR + APG+ IL+ S ++ + Y + G
Sbjct: 328 VAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 564 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
TSM+ PHV A+L P+ IR L TA
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 9e-13
Identities = 30/149 (20%), Positives = 50/149 (33%), Gaps = 25/149 (16%)
Query: 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKAS 271
GTH A T+A ++ + G G AP A++ A
Sbjct: 190 AGTDSSYGGSAGTHVAGTIAAKK--DGK---GIV-----GVAPGAKIMPIVIF--DDPAL 237
Query: 272 KAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVAC 331
+ + A I A G V++ S G ++ A++H +++
Sbjct: 238 VGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVV 293
Query: 332 SAGNSGP-----APSSLSNLAPWLITVGA 355
SAGN+ P+ P +I V A
Sbjct: 294 SAGNNTSDSHHQYPAGY----PGVIQVAA 318
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 82.1 bits (203), Expect = 6e-17
Identities = 30/148 (20%), Positives = 49/148 (33%), Gaps = 24/148 (16%)
Query: 451 GNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMA 510
GN A+ + S PA Y +++ A+ Q R
Sbjct: 182 GNDGADIRKLSAQQRIWPAA---YHPVSSVNKKQDPVIRVAAL-AQYRKGETPVLHGGGI 237
Query: 511 NFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPH 570
+ G N DI APG NI +A K SGTS +
Sbjct: 238 TGSRFGNN-------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAI 277
Query: 571 VAAAAALLKAIHPDWSSAAIRSALMTTA 598
V+ A + + +P ++ ++ L+ +A
Sbjct: 278 VSGVLAAMTSCNPRATATELKRTLLESA 305
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 20/140 (14%), Positives = 38/140 (27%), Gaps = 25/140 (17%)
Query: 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKAS 271
+ + HGT AS +A R G G P A ++ +
Sbjct: 79 PVKKSEALYIHGTAMASLIASR--------YGIY-----GVYPHALISSRRVI-----PD 120
Query: 272 KAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTN---QPFAFNRDGIAIGALNAVKHNIL 328
+ + + + +++IS G + ++ L
Sbjct: 121 GVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRL 176
Query: 329 VACSAGNSGPAPSSLSNLAP 348
+ + GN G LS
Sbjct: 177 IVAAVGNDGADIRKLSAQQR 196
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 7e-16
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 26/95 (27%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+++FT+ + DI APG+ I + + ++ Y SGT+M+
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDSG-------------YAELSGTAMAA 253
Query: 569 PHVAAAAALLKAIHPD-----WSSAAIRSALMTTA 598
PHVA A AL+ + D S I + L+ A
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRA 288
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 33/159 (20%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ D+ + D +GHGTH A TVA G G AP A L I KA
Sbjct: 72 DYGGDETNFSDNNGHGTHVAGTVAA---------AETGSGVV-GVAPKADLFIIKAL--- 118
Query: 268 PKASKAAGNTCFEADMLAAIDDAI------RDGVHVLSISIGTNQPFAFNRDGIAIGALN 321
+ +G + AI A+ + + ++++S+G D +
Sbjct: 119 --SGDGSGEM---GWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----Y 169
Query: 322 AVKHNILVACSAGNSGPAPSSLSNL-----APWLITVGA 355
AV +N+ V C+AGN G + +I VGA
Sbjct: 170 AVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 40/240 (16%), Positives = 70/240 (29%), Gaps = 69/240 (28%)
Query: 120 AKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGV 179
+ + + + G + +VD GV + K G
Sbjct: 9 SSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAG-------KVVGGW----- 56
Query: 180 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 239
+ ++D +P++ +GHGTH A A
Sbjct: 57 ----------------------------DFVDNDSTPQNGNGHGTHCAGIAAAV------ 82
Query: 240 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299
+ G A G AP A + + + + I A G V+S
Sbjct: 83 --TNNSTGIA-GTAPKASILAVRVL--------DNSGSGTWTAVANGITYAADQGAKVIS 131
Query: 300 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPA----PSSLSNLAPWLITVGA 355
+S+G + + + A +V +AGN+G P+ SN I V +
Sbjct: 132 LSLGGTVGNSGLQQAVN----YAWNKGSVVVAAAGNAGNTAPNYPAYYSN----AIAVAS 183
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
++F++ G D+ APG +I + + ++ Y SGTSM+
Sbjct: 190 KSSFSTYGSWV--------DVAAPGSSIYSTYPTST-------------YASLSGTSMAT 228
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHVA A LL + S++ IR+A+ TA
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTA 256
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 29/152 (19%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ ++D P D++ HGTH A A A A G A G AP R+ +A
Sbjct: 58 DFVDNDYDPMDLNNHGTHVAGIAA--------AETNNATGIA-GMAPNTRILAVRAL--- 105
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNI 327
+ +D+ AI A G V+++S+G + + + A
Sbjct: 106 -----DRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGS 156
Query: 328 LVACSAGNSGPA----PSSLSNLAPWLITVGA 355
+V +AGN+G + P+S N +I VGA
Sbjct: 157 VVVAAAGNNGSSTTFEPASYEN----VIAVGA 184
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 23/90 (25%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+A+F++ G D+ APG++I++ + Y SGTSM+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTITGNR-------------YAYMSGTSMAS 229
Query: 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
PHVA AALL + + IR A+ TA
Sbjct: 230 PHVAGLAALLASQGRNN--IEIRQAIEQTA 257
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 17/100 (17%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIV---------KYT 559
++ F++ G N DI APG + +Y
Sbjct: 349 LSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 560 IFSGTSMSCPHVAAAAALLKA-IHPDWSSAAIRSALMTTA 598
+GT+++ P V+ A AL+ H + L
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHG 441
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 7e-14
Identities = 51/384 (13%), Positives = 100/384 (26%), Gaps = 126/384 (32%)
Query: 18 SAQKQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFS 77
++ Y V + + K + ++ + +Y+ ++
Sbjct: 39 FQGSEELYYSVEYKNTATFNKLV------------------KKKSLNVVYNIP-ELHVAQ 79
Query: 78 AVLTPDEAARLSE---EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLL 134
+T A L+ ++ + + + + T + + + W+ + +
Sbjct: 80 IKMTKMHANALANYKNDIKYINATCSTCITSEKTIDR--TSNESLFSRQWDMNKITNNGA 137
Query: 135 SKARY--GQDVIVGLVDNGV-----------WPESKSFSDEGMGPVPKSWKGICQTGVAF 181
S + + ++D GV +SK+ G T
Sbjct: 138 SYDDLPKHANTKIAIIDTGVMKNHDDLKNNFSTDSKNLVP---------LNGFRGTEPEE 188
Query: 182 NSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAF 241
D D GHGT + +
Sbjct: 189 TG----------------------------DVHDVNDRKGHGTMVSGQTSAN-------- 212
Query: 242 GGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301
G G AP + +Y+ + AI A DG V++IS
Sbjct: 213 GKLI-----GVAPNNKFTMYRVF---------GSKKTELLWVSKAIVQAANDGNQVINIS 258
Query: 302 IGTNQPFAFNRDGIAIG-----------ALN-AVKHNILVACSAGNSGPAPSSLSNLA-- 347
+G+ N A+N A K +V +AGN G + L
Sbjct: 259 VGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQ 318
Query: 348 ----------------PWLITVGA 355
++TVG+
Sbjct: 319 REYQGNGEVKDVPASMDNVVTVGS 342
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 3e-14
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 19/95 (20%)
Query: 504 QPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSG 563
QP T+ G D+ APG +I+ A S+ S+ + SG
Sbjct: 192 QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCST-----------CFVSQSG 232
Query: 564 TSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
TS + HVA AA++ + P+ + A +R L+ +
Sbjct: 233 TSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 5e-08
Identities = 31/168 (18%), Positives = 53/168 (31%), Gaps = 43/168 (25%)
Query: 199 GFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARL 258
+ + T R D HGTH A V+GR G A A +
Sbjct: 51 TDFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA---------------GVAKGASM 95
Query: 259 AIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVH------VLSISIGTNQPFAFNR 312
+ K + + L ++ + + V+ + + N
Sbjct: 96 RSLRVLNCQGKGT--------VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA 147
Query: 313 DGIAIGALNAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 355
A + +++ +AGN +P+S AP +ITVGA
Sbjct: 148 ---ACQ--RLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGA 186
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
DI APG +I ++W ++S SGTSM+ PHVA AAL +P+ S
Sbjct: 198 DIYAPGSSITSSWYTSNS-----------ATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 588 AAIRSALMTTA 598
A + + L T A
Sbjct: 247 AQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 8e-09
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 39/155 (25%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ ++D D +GHGTH A T+ G G A + + +
Sbjct: 58 DFIDNDYDATDCNGHGTHVAGTIGGSTY---------------GVAKNVNVVGVRVLNCS 102
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGV--HVLSISIGTNQPFAFNRDGIAIGALNAVKH 325
S + ++A I+ + V ++S+G A + A+ AV
Sbjct: 103 GSGS--------NSGVIAGINWVKNNASGPAVANMSLGGGASQATDD---AVN--AAVAA 149
Query: 326 NILVACSAGNSGP-----APSSLSNLAPWLITVGA 355
I +AGN +P+ A ITVG+
Sbjct: 150 GITFVVAAGNDNSNACNYSPAR----AADAITVGS 180
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
D+ APG +I +AW + + +GTSM+ PHVA AAL +P +
Sbjct: 196 DLFAPGASIPSAWYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 588 AAIRSALMTTA 598
A++ SA++ A
Sbjct: 245 ASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 39/150 (26%)
Query: 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASK 272
+ +D +GHGTH A T+ G G A L + S
Sbjct: 61 GGNGQDCNGHGTHVAGTIGGVTY---------------GVAKAVNLYAVRVLDCNGSGST 105
Query: 273 AAGNTCFEADMLAAIDDAIRDGVH--VLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 330
+ ++A +D R+ V ++S+G A + A+ N++ ++ A
Sbjct: 106 --------SGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDN---AVK--NSIAAGVVYA 152
Query: 331 CSAGNSGP-----APSSLSNLAPWLITVGA 355
+AGN +P+ +TVGA
Sbjct: 153 VAAGNDNANACNYSPAR----VAEALTVGA 178
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
D+ APG I +AW + Y SGTSM+ PHVA AAL + +
Sbjct: 196 DLFAPGSQIKSAWYDGG-------------YKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 588 AAIRSALMTTA 598
+ L + A
Sbjct: 243 LQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 29/155 (18%), Positives = 59/155 (38%), Gaps = 39/155 (25%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
+ ++D D +GHGTH A T+ G + G A + + +
Sbjct: 56 DFVDNDADSSDCNGHGTHVAGTIGGSQY---------------GVAKNVNIVGVRVLSCS 100
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGV--HVLSISIGTNQPFAFNRDGIAIGALNAVKH 325
+ + +++ +D ++ V ++S+G Q A + A+ A++
Sbjct: 101 GSGTT--------SGVISGVDWVAQNASGPSVANMSLGGGQSTALDS---AVQ--GAIQS 147
Query: 326 NILVACSAGNSGP-----APSSLSNLAPWLITVGA 355
+ +AGNS +P+ P +TVG+
Sbjct: 148 GVSFMLAAGNSNADACNTSPAR----VPSGVTVGS 178
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-13
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 36/103 (34%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+A+F++R P +++APG++IL+ + + Y GT+M+
Sbjct: 213 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 569 PHVAAAAALLKAIH-------------PDWSSAAIRSALMTTA 598
PHV+ AL++A + D S +R L TA
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 292
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 35/165 (21%), Positives = 53/165 (32%), Gaps = 36/165 (21%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC--- 264
+ R D +GHGTH T+A G G AP ++ +
Sbjct: 61 KVSTKLRDCADQNGHGTHVIGTIAAL---------NNDIGVV-GVAPGVQIYSVRVLDAR 110
Query: 265 -------------WATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFN 311
A A D D V+S+S+G ++
Sbjct: 111 GSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDD----DAAEVISMSLGGPADDSYL 166
Query: 312 RDGIAIGALNAVKHNILVACSAGNSGP-APSSLSNLAPWLITVGA 355
D I A I++ ++GN G +PS + P +I VGA
Sbjct: 167 YDMII----QAYNAGIVIVAASGNEGAPSPSYPAA-YPEVIAVGA 206
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 5e-13
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
D+ APG +I+ A S+ S+ + SGTS + HVA AA++ + P+ +
Sbjct: 360 DLFAPGEDIIGASSDCST-----------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 588 AAIRSALMTTA 598
A +R L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 3e-11
Identities = 51/343 (14%), Positives = 92/343 (26%), Gaps = 95/343 (27%)
Query: 26 YIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEA 85
Y+V ++ H Q + L + L+ + + GF ++ D
Sbjct: 78 YVVVL------KEETHLSQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLL 131
Query: 86 ARL--SEEVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDV 143
V + + + W L+ + D G V
Sbjct: 132 ELALKLPHVDYI---EEDSSVFAQSIPW---NLERI-----TPPRYRADEYQPPDGGSLV 180
Query: 144 IVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQL 203
V L+D + + + EG +
Sbjct: 181 EVYLLDTSIQSDHREI--EG----------------------------RVMV---TDFEN 207
Query: 204 YGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKA 263
+ T R D HGTH A V+GR G A A + +
Sbjct: 208 VPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA---------------GVAKGASMRSLRV 252
Query: 264 CWATPKASKAAGNTCFEADMLAAIDDAIRDGVH------VLSISIGTNQPFAFNRDGIAI 317
K + + L ++ + + V+ + + N A
Sbjct: 253 LNCQGKGT--------VSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNA---AC 301
Query: 318 GALNAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 355
+ +++ +AGN +P+S AP +ITVGA
Sbjct: 302 Q--RLARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGA 338
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 7e-13
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 18/94 (19%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
A+F++ G + D+ APG +IL+ + Y+ +GTSM+
Sbjct: 234 RASFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMAT 279
Query: 569 PHVAAAAALLKA----IHPDWSSAAIRSALMTTA 598
PHV+ AAL+ + ++ + + A ++ L++T
Sbjct: 280 PHVSGVAALVISAANSVNKNLTPAELKDVLVSTT 313
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 44/254 (17%), Positives = 89/254 (35%), Gaps = 59/254 (23%)
Query: 124 WNHFNMGQDLLSKA----RYGQDVIVGLVDNGVW--PESKSFSDEGMGPVPKSWKG---I 174
W++F+ K GQ+V+V +VD G+ + G I
Sbjct: 11 WHYFDRYGVKADKVWDMGFTGQNVVVAVVDTGILHHRDLN----------ANVLPGYDFI 60
Query: 175 CQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRR 234
+ ++ + + + + + + D HG+H A T+A
Sbjct: 61 SNSQISLD----GDGRDADPFDEGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIA--- 113
Query: 235 VPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 291
A G A G A A++ +A + G +D+ + A
Sbjct: 114 -----AVTNNRIGVA-GVAYGAKVVPVRA------LGRCGGYD---SDISDGLYWAAGGR 158
Query: 292 -------RDGVHVLSISIGTNQPFAFN-RDGIAIGALNAVKHNILVACSAGNSGP--APS 341
R+ V+++S+G++ ++N + I A + LV +AGN + +
Sbjct: 159 IAGIPENRNPAKVINMSLGSDGQCSYNAQTMID----RATRLGALVVVAAGNENQNASNT 214
Query: 342 SLSNLAPWLITVGA 355
++ +++VGA
Sbjct: 215 WPTS-CNNVLSVGA 227
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 36/103 (34%)
Query: 509 MANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSC 568
+A+F++R P +++APG++IL+ + + Y GT+M+
Sbjct: 288 IASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 569 PHVAAAAALLKAIH-------------PDWSSAAIRSALMTTA 598
PHV+ AL++A + D S +R L TA
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITA 367
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-12
Identities = 54/326 (16%), Positives = 88/326 (26%), Gaps = 81/326 (24%)
Query: 53 SVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSHPEKYSLQTTRS 110
+Y +K I + + +L + V V H + L S
Sbjct: 14 FNPHEVLGIGGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH--QAVLLGKPS 70
Query: 111 WEFVGLDEVAKQN-WNHFNMGQDLLSKARY--GQDVIVGLVDNGVWPESKSFSDEGMGPV 167
W G + A+ W + + + V ++D
Sbjct: 71 WLGGGSTQPAQTIPWGIERVKAPSVWSITDGSVSVIQVAVLD------------------ 112
Query: 168 PKSWKGICQTGVAFN-SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHT 226
TGV ++ L + R D +GHGTH
Sbjct: 113 ---------TGVDYDHPDLAANIAWCVSTL---------RGKVSTKLRDCADQNGHGTHV 154
Query: 227 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKAC----------------WATPKA 270
T+A G G AP ++ + A
Sbjct: 155 IGTIAAL---------NNDIGVV-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 271 SKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVA 330
A D D V+S+S+G ++ D I A I++
Sbjct: 205 DGVADKDGDGIIAGDPDD----DAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIV 256
Query: 331 CSAGNSGP-APSSLSNLAPWLITVGA 355
++GN G +PS + P +I VGA
Sbjct: 257 AASGNEGAPSPSYPAA-YPEVIAVGA 281
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
DI APG +I + W SGTSM+ PH+A AA L + S+
Sbjct: 201 DIFAPGTSITSTWIGGR-------------TNTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 588 AAIRSALMTTA 598
A+ + T +
Sbjct: 247 GAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 44/153 (28%)
Query: 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAA 274
+ RD GHGTH A T+ + G A + K +
Sbjct: 63 TARDGHGHGTHCAGTIGSKTW---------------GVAKKVSIFGVKVL-----DDSGS 102
Query: 275 GNTCFEADMLAAIDDAIRDGVH-------VLSISIGTNQPFAFNRDGIAIGALNAVKHNI 327
G+ ++++A +D D V S+S+G A N+ A +
Sbjct: 103 GSL---SNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQ---AAAR--LQSSGV 154
Query: 328 LVACSAGNSGP-----APSSLSNLAPWLITVGA 355
VA +AGN +P+S P + TVGA
Sbjct: 155 FVAVAAGNDNRDAANTSPAS----EPTVCTVGA 183
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSS 587
DI PG +IL+ W S SGTSM+ PHVA AA L + ++
Sbjct: 200 DIFGPGTDILSTWIGGS-------------TRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 588 AAIRSALMTTA 598
A+ + TA
Sbjct: 246 ASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 37/160 (23%), Positives = 55/160 (34%), Gaps = 47/160 (29%)
Query: 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT 267
R D +GHGTH A TV R G A +L K
Sbjct: 58 TYYYSSR---DGNGHGTHCAGTVGSRTY---------------GVAKKTQLFGVKVL--- 96
Query: 268 PKASKAAGNTCFEADMLAAIDDAIRDGVH-------VLSISIGTNQPFAFNRDGIAIGAL 320
+G + ++A +D D + V S+S+G + N A
Sbjct: 97 --DDNGSGQY---STIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNS---AAAR- 147
Query: 321 NAVKHNILVACSAGNSGP-----APSSLSNLAPWLITVGA 355
++VA +AGN+ +P+S P + TVGA
Sbjct: 148 -LQSSGVMVAVAAGNNNADARNYSPAS----EPSVCTVGA 182
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 104/734 (14%), Positives = 196/734 (26%), Gaps = 259/734 (35%)
Query: 42 EIQETHHSY--LLSV-----------KDNEEEARA-------SHLYSYKHSING------ 75
E E + Y +LSV KD ++ ++ H+ K +++G
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 76 -------------FSAVLTPDE---AARLSEEVVSVYPSHPEK-YSLQTTRSWEFVGLDE 118
VL + + + E PS + Y Q R +
Sbjct: 70 TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQRDRLYN--DNQV 125
Query: 119 VAKQNWN---HFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGIC 175
AK N + + + L + R ++V++ +G+ K+W
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLI----------------DGVLGSGKTW---- 165
Query: 176 QTGVAFNSSLCNKKIIGAR----YYLKGFEQLYGPLNATEDDRSP-----RDMDGHGTHT 226
VA + K+ ++L N+ E +D + T
Sbjct: 166 ---VA-LDVCLSYKVQCKMDFKIFWLN-----LKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 227 ASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAA 286
+ + ++ S L + Y+ C L
Sbjct: 217 SDHSSNIKLRIHSIQAELRR--------LLKSKPYENC-------------------LLV 249
Query: 287 IDDAIRDGVHVLSISIGTNQPFAFN-------RDGIAIGALNA--VKHNILVACSAGNSG 337
+ + +++ F + R L+A H L S +
Sbjct: 250 LLN-VQNAKAW--------NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT- 299
Query: 338 PAPSSLSNLAPWLITVGAGSLDRDFVG--PVVLGTGMEIIGKTVTP----------YNLK 385
S L +L L R+ + P L II +++ N
Sbjct: 300 -PDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCD 353
Query: 386 KMHPLVYAA-DVVVPGVHQNETNQCLPGSLTPEKVKGKI---VLCMRGSGFKLSKGMEV- 440
K+ ++ ++ +V+ P ++ ++ S+ P I +L + S M V
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSA--HIPTILLSLIWFDVIKSDVMVVV 408
Query: 441 ----KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQ 496
K L+ E + +P+ +Y + +K+ +
Sbjct: 409 NKLHKY----SLVEKQP----KESTI---SIPS---IYLE-LKVKL-------------E 440
Query: 497 ARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIV 556
LH +D Y NI + ++ D+
Sbjct: 441 NEYALHRS--------------IVDHY-----------NIPKTF-DSDDLIPPYLDQYFY 474
Query: 557 KYTIFSGTSMSCPHVAAA-----AALLKAIHPD--WSSAAIRSALMTTAWMKNNKALPIT 609
+ H+ L + + D + IR +TAW
Sbjct: 475 SHIGH--------HLKNIEHPERMTLFRMVFLDFRFLEQKIRHD--STAW---------- 514
Query: 610 NADGSIA---TPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNK 666
NA GSI F + DP Y+ L +L N +
Sbjct: 515 NASGSILNTLQQLKFYKPYICDN---DP--KYERLVNAILDFLPKIE---EN-LICSKYT 565
Query: 667 PPSALNLNYPSIAI 680
+ L AI
Sbjct: 566 DLLRIALMAEDEAI 579
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 2e-05
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
GTS + P A LL +P+ + ++ + +A
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 305
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
+GTS S P A AL + + + ++ ++ T+ + A
Sbjct: 254 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 313
Query: 618 PFSFGSG 624
S+G G
Sbjct: 314 SHSYGYG 320
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.83 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.87 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.79 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.69 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.5 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.31 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.2 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.67 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.12 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 95.98 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 95.54 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 95.47 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 93.19 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.04 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 86.17 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 86.09 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 83.3 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-119 Score=1046.90 Aligned_cols=624 Identities=39% Similarity=0.648 Sum_probs=559.1
Q ss_pred ccCCccccccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccc
Q 004077 107 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 186 (775)
Q Consensus 107 ~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~ 186 (775)
|+++|+|+||.+. . .+|..+.+|+||+|||||||||++||+|.+.+++|+|.+|+|.|+.|.+|+...|
T Consensus 1 Tt~s~~flgl~~~-----~------~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~c 69 (649)
T 3i6s_A 1 TTHTSDFLKLNPS-----S------GLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMC 69 (649)
T ss_dssp CCSHHHHTTCCSS-----S------SHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSC
T ss_pred CCCChHHcCCCCc-----h------hhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCcccccccc
Confidence 5789999999742 2 7999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecC
Q 004077 187 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 266 (775)
Q Consensus 187 n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~ 266 (775)
|+|++++++|.+++.... .+...+..+++|..||||||||||||+.+++.+++ |++.+.++||||+|+|++||+|+.
T Consensus 70 N~kiig~~~f~~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~-G~~~g~~~GvAP~A~l~~~kv~~~ 146 (649)
T 3i6s_A 70 NRKLIGANYFNKGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHF-GYAPGTARGVAPRARLAVYKFSFN 146 (649)
T ss_dssp CSSEEEEEECCHHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSSTTCEEEEEECEET
T ss_pred ccceeeeEeccCcccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCcccc-ccccCceeEECCCCEEEEEeccCC
Confidence 999999999987655332 22334556789999999999999999988887777 788888999999999999999998
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCC
Q 004077 267 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 346 (775)
Q Consensus 267 ~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ 346 (775)
. | +..+++++||+||+++|+||||||||.. ...+..+++.+++++|.++||+||+||||+|+...++.+.
T Consensus 147 ~--g-------~~~~~i~~Ai~~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ 216 (649)
T 3i6s_A 147 E--G-------TFTSDLIAAMDQAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNG 216 (649)
T ss_dssp T--E-------ECHHHHHHHHHHHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCC
T ss_pred C--C-------CCHHHHHHHHHHHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCC
Confidence 6 4 8999999999999999999999999984 4567789999999999999999999999999999999999
Q ss_pred CCceEEecccccccccccceEeCCCcEEeeeeeccCCC-CcceeeEEecccccCCcCCCCCCCcCCCCCCCCce--eceE
Q 004077 347 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNL-KKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV--KGKI 423 (775)
Q Consensus 347 ~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gki 423 (775)
+||+|+|||++.+|.|...+.+++++++.|++++.... ...+|+++.. ....|.+..+++.++ +|||
T Consensus 217 ap~vitVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkI 286 (649)
T 3i6s_A 217 SPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTI 286 (649)
T ss_dssp CTTSEEEEEEECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCE
T ss_pred CCceEEEeeeecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc----------cccccccccccccccccCCcE
Confidence 99999999999999999999999999999999987764 6678888865 356799988888877 9999
Q ss_pred EEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeec
Q 004077 424 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHT 503 (775)
Q Consensus 424 vl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~ 503 (775)
|+|+||.+.+.+|..+++.+|+.|+|++|+. .....+.+.+|..+|+.++|..|++|++++.+++++|.+..+..+.
T Consensus 287 vlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~---~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~ 363 (649)
T 3i6s_A 287 VICDDNGDFSDQMRIITRARLKAAIFISEDP---GVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDT 363 (649)
T ss_dssp EEECCCSCHHHHHHHHHHHTCSEEEEECCCG---GGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCC
T ss_pred EEEeCCCccHHHHHHHHHhcCceEEEEecCc---cccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeecc
Confidence 9999999999999999999999999999986 4556677899999999999999999999999999999999999888
Q ss_pred CCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCc-cccccEEeeccCchhhHHHHHHHHHHHhC
Q 004077 504 QPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDK-RIVKYTIFSGTSMSCPHVAAAAALLKAIH 582 (775)
Q Consensus 504 ~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 582 (775)
.+.+.++.||||||+...++++||||+|||++|+++++..........+. +...|..+||||||||||||++|||||+|
T Consensus 364 ~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~ 443 (649)
T 3i6s_A 364 KPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAH 443 (649)
T ss_dssp SSCCEECTTSCCSSCTTCTTSCSCCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCcccccCCCCCCCCCCCccCCeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhC
Confidence 88999999999999997789999999999999999998865444333333 44789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcccccCCCCCcccCC-CCCCCCCCccceeccCccccCCCCeeeecchhhHHHhhhcCCCCCC----
Q 004077 583 PDWSSAAIRSALMTTAWMKNNKALPITNA-DGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT---- 657 (775)
Q Consensus 583 P~~s~~~ik~~L~~TA~~~~~~g~~~~~~-~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~---- 657 (775)
|+|+|++||++||+||+++++.+.++.+. .+.++++++||+|+||+.+|++||||||++.+||++|||++||+.+
T Consensus 444 P~~Spa~IksaLmtTA~~~~~~g~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~ 523 (649)
T 3i6s_A 444 PEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKT 523 (649)
T ss_dssp TTCCHHHHHHHHHHTCBCBCTTSSBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHH
T ss_pred CCCCHHHHHHHHhcccccccCCCCcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCccccee
Confidence 99999999999999999999999888775 4668899999999999999999999999999999999999999865
Q ss_pred --CCccc--CCCCCCCCCCCCCCeeEeec-CCce-----EEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccC
Q 004077 658 --NPVFR--CPNKPPSALNLNYPSIAIPN-LNGT-----VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHI 727 (775)
Q Consensus 658 --~~~~~--~~~~~~~~~~ln~ps~~~~~-~~~~-----~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~ 727 (775)
+..+. |+. ...+||||||++.. +.++ ++|+|||||||....+|++.++.|.|++|+|+|.+|+|.+.
T Consensus 524 ~~~~~~~~~C~~---~~~~lNyPs~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~ 600 (649)
T 3i6s_A 524 IARSSASHNCSN---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNK 600 (649)
T ss_dssp HHTTTSCC-CCC---CCCCCCCSSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-
T ss_pred eecCCCcCCCCC---chhhcCCCcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecC
Confidence 45566 985 45799999999987 5666 89999999999989999999999999999999999999989
Q ss_pred CcEEEEEEEEEECcccccccCCCceEEEEEEEEC--CccEEEeEEEEEeC
Q 004077 728 GQKKSFTITVRLGSETTRQGLTKQYVFGWYRWTD--GLHLVRSPMAVSFA 775 (775)
Q Consensus 728 ~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~v~~P~~~~~~ 775 (775)
+|+++|+|+|+.. ....+.|.||+|+|+| +.|.||+||+|++.
T Consensus 601 ~~~~~f~v~~~~~-----~~~~~~~~fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 601 NEKQSYTLTIRYI-----GDEGQSRNVGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp CCEEEEEEEEEEC-----CC---CCCEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred CCEEEEEEEEEec-----ccCCCceEEEEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999999999983 3445678999999999 89999999999873
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-109 Score=968.53 Aligned_cols=609 Identities=40% Similarity=0.718 Sum_probs=516.8
Q ss_pred ccCCccccccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccc
Q 004077 107 TTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLC 186 (775)
Q Consensus 107 ~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~ 186 (775)
|+++|+|+||++ .+|.+..+|+||+|||||||||++||+|+|+++++++.+|+|.|+.+.+| .|
T Consensus 1 tt~s~~flGl~~-------------~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~---~~ 64 (621)
T 3vta_A 1 TTRSWDFLGFPL-------------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF---RC 64 (621)
T ss_dssp CCSHHHHTTCCT-------------TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSC---CC
T ss_pred CCCChhHcCCCc-------------cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCc---cc
Confidence 578999999974 57888889999999999999999999999999999999999999998877 69
Q ss_pred cceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecC
Q 004077 187 NKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA 266 (775)
Q Consensus 187 n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~ 266 (775)
|+|++++++|..+.... ..+..+++|++||||||||||||+..++.+.. |.+.+.++||||+|+|++||+|++
T Consensus 65 n~k~ig~~~~~~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~-g~~~g~~~GvAP~A~l~~~kv~~~ 137 (621)
T 3vta_A 65 NRKIIGARSYHIGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLY-GLGLGTARGGVPLARIAAYKVCWN 137 (621)
T ss_dssp CSSEEEEEECCCSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEET-TEEEEEECCSCTTSEEEEEECEET
T ss_pred CcceeeeeecccCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCcccc-ccccccEEEECCCCEEEEEEeecC
Confidence 99999999998764432 23445789999999999999999987777666 777788999999999999999998
Q ss_pred CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCC
Q 004077 267 TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNL 346 (775)
Q Consensus 267 ~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ 346 (775)
. | |..+++++||++|+++|+||||||||+....++..+++++++++|.++||+||+||||+|+...++.+.
T Consensus 138 ~--g-------~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~ 208 (621)
T 3vta_A 138 D--G-------CSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208 (621)
T ss_dssp T--E-------ECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCC
T ss_pred C--C-------CCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCC
Confidence 7 5 889999999999999999999999998656667788999999999999999999999999999999999
Q ss_pred CCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEE
Q 004077 347 APWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLC 426 (775)
Q Consensus 347 ~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~ 426 (775)
+||+++|++++.++.|...+.++++..+.+.++.... ...++++.+.+.............|.+..+++.+++|||++|
T Consensus 209 a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~ 287 (621)
T 3vta_A 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD-NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVC 287 (621)
T ss_dssp CTTSEEEEEECCSEEEEEEEEETTSCEEEEBCCCCSC-CEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEEC
T ss_pred CCCceeEEEeeccccceeeEEeccCceeeeeecccCC-CcccccccccccccccccccccccccccccccccccceEEEE
Confidence 9999999999999999999999999999988876543 456777777665544444455678999999999999999999
Q ss_pred ecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCC
Q 004077 427 MRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPA 506 (775)
Q Consensus 427 ~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~ 506 (775)
+++. ..+..+....|+.+++++++... ..+.+.+|...++..++..+..|+.....+.+.+....+. .....
T Consensus 288 ~~~~---~~~~~~~~~~Ga~gvi~~~~~~~----~~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~-~~~~~ 359 (621)
T 3vta_A 288 EASF---GPHEFFKSLDGAAGVLMTSNTRD----YADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTI-LNASA 359 (621)
T ss_dssp SSCC---CHHHHHHHHTTCSEEEEECSCCS----SCCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEE-ECTTC
T ss_pred ecCC---ChhHHhhhhcceeEEEEEecCCC----cccccccceEEECHHHHHHHHHHHhccCCcceEEecceEe-ccCCC
Confidence 8753 45667778899999999987543 3456789999999999999999999999888888666554 44568
Q ss_pred CccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCC
Q 004077 507 PFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWS 586 (775)
Q Consensus 507 ~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s 586 (775)
+.++.||||||+...++++||||+|||++|+|+++...... ...+...|..|||||||||||||++|||||+||+|+
T Consensus 360 ~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~s 436 (621)
T 3vta_A 360 PVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWS 436 (621)
T ss_dssp CCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred CceeeecCCCCCCCCCCeeccccccCCcceEeecCcccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCC
Confidence 89999999999987789999999999999999998643322 123346899999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeecchhhHHHhhhcCCCCCC------CCc
Q 004077 587 SAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFT------NPV 660 (775)
Q Consensus 587 ~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~------~~~ 660 (775)
|++||++||+||++++..+ .++.+++||+|+||+.+|++||||||++..||+.|||+++|+++ +..
T Consensus 437 pa~IksaLmtTA~~~~~~~--------~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~ 508 (621)
T 3vta_A 437 PAAIKSALMTTASPMNARF--------NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDY 508 (621)
T ss_dssp HHHHHHHHHHTCBCCCTTT--------CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC--------------------
T ss_pred HHHHHHHHHhcCCcccccC--------CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeeccc
Confidence 9999999999999887653 34678999999999999999999999999999999999999876 345
Q ss_pred ccCCCC-CCCCCCCCCCeeEee---cCCceEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEE
Q 004077 661 FRCPNK-PPSALNLNYPSIAIP---NLNGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTIT 736 (775)
Q Consensus 661 ~~~~~~-~~~~~~ln~ps~~~~---~~~~~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~ 736 (775)
..|+.. .....+||||||++. ++..+++|+|||||+|....||+++++.|.|++|+|+|.+|+|++.+|+++|+|+
T Consensus 509 ~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt 588 (621)
T 3vta_A 509 SACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLT 588 (621)
T ss_dssp ---------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEE
T ss_pred cccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEE
Confidence 667654 334679999999984 5667899999999999999999999999999999999999999989999999999
Q ss_pred EEECcccccccCCCceEEEEEEEECCccEEEeEEEEEe
Q 004077 737 VRLGSETTRQGLTKQYVFGWYRWTDGLHLVRSPMAVSF 774 (775)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~v~~P~~~~~ 774 (775)
|+. ..++.|.||+|+|+|+.|.||+||+|+.
T Consensus 589 ~~~-------~~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 589 VRG-------SIKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp EEE-------CCCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred EEe-------cCCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 986 2567899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-82 Score=770.88 Aligned_cols=542 Identities=23% Similarity=0.272 Sum_probs=426.5
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCcc----------Ccccccceeeeeeecccccc
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF----------NSSLCNKKIIGARYYLKGFE 201 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~----------~~~~~n~kiig~~~~~~~~~ 201 (775)
.+|..+++|+||+|||||||||++||+|.+. ..|++.|..+..| ....||+|++++++|.++.
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~- 80 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG- 80 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS-
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC-
Confidence 7999999999999999999999999999853 4677777543322 2347999999999987631
Q ss_pred cccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHH
Q 004077 202 QLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEA 281 (775)
Q Consensus 202 ~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~ 281 (775)
...|+.||||||||||||+...+.+. .+.+.||||+|+|++||+|++...+ +..+
T Consensus 81 -------------~~~D~~gHGThVAgiiAg~~~~~~~~-----~~~~~GvAP~A~l~~~kv~~~~g~~-------~~~~ 135 (926)
T 1xf1_A 81 -------------KTAVDQEHGTHVSGILSGNAPSETKE-----PYRLEGAMPEAQLLLMRVEIVNGLA-------DYAR 135 (926)
T ss_dssp -------------CCCCSSTTTTHHHHSSCCCCCCCCSC-----SCCTTTTCTTSEEEEEECCCCSCHH-------HHHH
T ss_pred -------------CCCCCCCcHHHHHHHHhCCCccCccc-----CCceEEECCCCEEEEEEeecCCCCC-------CcHH
Confidence 12288999999999999986543221 2457899999999999999876222 5668
Q ss_pred HHHHHHHHHHhCCceEEEEccCCCCC-CCCCccHHHHHHHHHHcCCcEEEEecCCCCCC-------------CCCCCCC-
Q 004077 282 DMLAAIDDAIRDGVHVLSISIGTNQP-FAFNRDGIAIGALNAVKHNILVACSAGNSGPA-------------PSSLSNL- 346 (775)
Q Consensus 282 ~i~~ai~~a~~~gvdVIn~SlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~~- 346 (775)
++++||++|+++|+||||||||+... .....++++++++.|.++||+||+||||+|+. ..++.++
T Consensus 136 ~i~~Ai~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA 215 (926)
T 1xf1_A 136 NYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPA 215 (926)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCT
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcc
Confidence 89999999999999999999998432 34566788899999999999999999999963 2334444
Q ss_pred -CCceEEecccccccccccceEe-CCCcEEeeeeecc---CCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceec
Q 004077 347 -APWLITVGAGSLDRDFVGPVVL-GTGMEIIGKTVTP---YNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKG 421 (775)
Q Consensus 347 -~p~vitVgAs~~~~~~~~~~~~-~~~~~~~g~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 421 (775)
+||+|+|||++.++.+...+.+ +++....+.++.. ......+|+++... .|.+..+ .+++|
T Consensus 216 ~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~G 281 (926)
T 1xf1_A 216 AADSTLTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKG 281 (926)
T ss_dssp TTCCSEEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTT
T ss_pred cCCceEEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCC
Confidence 6999999999999999888887 5554444444322 22266788887643 3766655 68999
Q ss_pred eEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc-cccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEE
Q 004077 422 KIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE-YSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTV 500 (775)
Q Consensus 422 kivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~ 500 (775)
|||||+||.|.+.+|..+++.+|+.|+|++|+...... .......+|..+++.++|..|.+ ....+.++......
T Consensus 282 kivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~ 357 (926)
T 1xf1_A 282 KIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKV 357 (926)
T ss_dssp SEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEE
T ss_pred eEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEeccccee
Confidence 99999999999999999999999999999998654332 23456789999999999998874 44555555544444
Q ss_pred eecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH
Q 004077 501 LHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA 580 (775)
Q Consensus 501 ~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q 580 (775)
......+.++.||||||+. ++++||||+|||++|+|+++. +.|..+||||||||||||++|||+|
T Consensus 358 ~~~~~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q 422 (926)
T 1xf1_A 358 LPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQK 422 (926)
T ss_dssp EECSSCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHH
T ss_pred cccCCcceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHH
Confidence 5566688999999999996 799999999999999999986 6899999999999999999999965
Q ss_pred ----hCCCCCHHH----HHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeecchhhHHHhhhcC
Q 004077 581 ----IHPDWSSAA----IRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSH 652 (775)
Q Consensus 581 ----~~P~~s~~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~ 652 (775)
.||.|+|++ ||++||+||+++...+ ....+++++||+|+||+.+|+++.+ |||..
T Consensus 423 ~~k~~~P~~sp~~~~~~Iks~L~~TA~~~~~~~------~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~ 485 (926)
T 1xf1_A 423 QYETQYPDMTPSERLDLAKKVLMSSATALYDED------EKAYFSPRQQGAGAVDAKKASAATM-----------YVTDK 485 (926)
T ss_dssp HHHHSSSSSHHHHHHHHHHHHHHHHSBCCEEGG------GTEECCHHHHTTCBCCHHHHHHCSE-----------EEEES
T ss_pred HHhccCCCCCHHHHHHHHHHHHHhcCCCcccCC------CCccCChhccCCCccCHHHhcCCCe-----------EEEcC
Confidence 599999997 9999999999875431 1234678899999999999999865 56765
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCCeeEeecCCceEEEEEEEEecCCCC--eEEEEEeeC--CCCcEEEEecceEEEc---
Q 004077 653 GFSFTNPVFRCPNKPPSALNLNYPSIAIPNLNGTVIVKRTVTNVGGSK--SVYFFSAKP--PMGVSVKANPSILFFD--- 725 (775)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~t~~~tv~n~~~~~--~ty~~~~~~--~~g~~~~v~p~~~~~~--- 725 (775)
+++. +++.++++..+.+++|||||+|+.+ .+|++.+.. |.+..++|+|..|.|.
T Consensus 486 ~~~~-------------------~~i~l~~~~~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~ 546 (926)
T 1xf1_A 486 DNTS-------------------SKVHLNNVSDKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQ 546 (926)
T ss_dssp SSSC-------------------SCEEEEEECSEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCE
T ss_pred CCCc-------------------ceeeccccCccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCC
Confidence 4331 2455555667899999999999854 577777764 6788888888876654
Q ss_pred ----cCCcEEEEEEEEEECcc---cccccCCCceEEEEEEEE--CCcc-EEEeEEEEEe
Q 004077 726 ----HIGQKKSFTITVRLGSE---TTRQGLTKQYVFGWYRWT--DGLH-LVRSPMAVSF 774 (775)
Q Consensus 726 ----~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~g~~~~~--~~~~-~v~~P~~~~~ 774 (775)
++||+++|+|+|+.... .+..++++.|+||+|+|+ ++.| .||+||++..
T Consensus 547 ~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 547 KITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp EEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred eEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 35999999999997410 001245677899999999 5655 5999999864
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-60 Score=541.81 Aligned_cols=367 Identities=29% Similarity=0.434 Sum_probs=283.0
Q ss_pred CCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhh-----------cc
Q 004077 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARL-----------SE 90 (775)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L-----------~~ 90 (775)
++-.|||.||+... .+...++++.+ ..+++++|+ .|+||+++++.+++++| ++
T Consensus 34 ~~~~~iV~~~~~~~--------~~~~~~~~~~~-------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~ 97 (539)
T 3afg_A 34 QEVSTIIMFDNQAD--------KEKAVEILDFL-------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQ 97 (539)
T ss_dssp CEEEEEEEESSHHH--------HHHHHHHHHHH-------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCC
T ss_pred CceEEEEEECCCCC--------HHHHHHHHHhc-------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhcccccccccc
Confidence 34579999996541 11222333332 246889996 59999999999999999 55
Q ss_pred --ccceEEecCCCcccccccCCccccccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCC
Q 004077 91 --EVVSVYPSHPEKYSLQTTRSWEFVGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVP 168 (775)
Q Consensus 91 --~V~~V~~~~~~~~~~~~~~s~~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~ 168 (775)
+|++|++++ .+++.... .+++.... . ...+.+|..+++|+||+|||||||||++||+|.+
T Consensus 98 ~~~V~~v~~d~--~~~~~~~~----~~~~~~~~-~----~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------- 159 (539)
T 3afg_A 98 LSGVQFIQEDY--VVKVAVET----EGLDESAA-Q----VMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG------- 159 (539)
T ss_dssp CTTEEEEEECC--EEECC----------------C----CBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT-------
T ss_pred CCCeeEEEecc--cccccCcc----ccCCcccc-c----cCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC-------
Confidence 999999999 77664321 22221100 0 0112789999999999999999999999999963
Q ss_pred CCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcc
Q 004077 169 KSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGT 248 (775)
Q Consensus 169 ~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~ 248 (775)
++++.++|..+ ...+.|+.||||||||||||+.. ...+.
T Consensus 160 --------------------~i~~~~d~~~~-------------~~~~~D~~gHGThVAgiiag~~~--------~~~g~ 198 (539)
T 3afg_A 160 --------------------KVIGWVDFVNG-------------KTTPYDDNGHGTHVASIAAGTGA--------ASNGK 198 (539)
T ss_dssp --------------------TEEEEEETTTC-------------CSSCCBSSSHHHHHHHHHHCCCG--------GGTTT
T ss_pred --------------------CEeeeEECCCC-------------CCCCCCCCCCHHHHHHHHhCcCc--------cCCCC
Confidence 35556666543 12567899999999999998731 12344
Q ss_pred eeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC----CceEEEEccCCCCCCCCCccHHHHHHHHHHc
Q 004077 249 ASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD----GVHVLSISIGTNQPFAFNRDGIAIGALNAVK 324 (775)
Q Consensus 249 ~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~ 324 (775)
+.||||+|+|+++|++++. | .+..+++++||+||+++ |++|||||||... .....+++..+++++.+
T Consensus 199 ~~GvAp~A~l~~~kv~~~~--g------~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~ 269 (539)
T 3afg_A 199 YKGMAPGAKLVGIKVLNGQ--G------SGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWD 269 (539)
T ss_dssp TCCSCTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHH
T ss_pred EEEECCCCEEEEEEeecCC--C------CcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHh
Confidence 6899999999999999876 4 46789999999999986 9999999999843 34456889999999999
Q ss_pred CCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcC
Q 004077 325 HNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVH 402 (775)
Q Consensus 325 ~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~ 402 (775)
+|++||+||||+|+...+. +...+++|+|||++.
T Consensus 270 ~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~-------------------------------------------- 305 (539)
T 3afg_A 270 AGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDK-------------------------------------------- 305 (539)
T ss_dssp TTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECT--------------------------------------------
T ss_pred cCCEEEEECCCCCCCCCcccCCccCCceEEEeeecC--------------------------------------------
Confidence 9999999999999865544 345689999998542
Q ss_pred CCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHH
Q 004077 403 QNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHE 482 (775)
Q Consensus 403 ~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~ 482 (775)
T Consensus 306 -------------------------------------------------------------------------------- 305 (539)
T 3afg_A 306 -------------------------------------------------------------------------------- 305 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEee
Q 004077 483 YIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFS 562 (775)
Q Consensus 483 ~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 562 (775)
.+.++.||||||+. ++++||||+|||++|+++++...... +.....|..++
T Consensus 306 -----------------------~~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~~----~~~~~~y~~~s 356 (539)
T 3afg_A 306 -----------------------YDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMG----QPINDYYTAAP 356 (539)
T ss_dssp -----------------------TSCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCCS----EECSSSEEEEC
T ss_pred -----------------------CcccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCCC----CCCcccccccC
Confidence 23778999999987 69999999999999999986532110 01113699999
Q ss_pred ccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCC
Q 004077 563 GTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 635 (775)
Q Consensus 563 GTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 635 (775)
|||||||||||++|||+|++|+|++++||++|++||+++...+ .+++.||+|+||+.+|++..
T Consensus 357 GTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~----------~~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 357 GTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE----------IADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGG----------CSBTTTBTCBCCHHHHHTGG
T ss_pred chHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCC----------CCccCccCCccCHHHHhhhc
Confidence 9999999999999999999999999999999999999875321 25678999999999999854
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=505.90 Aligned_cols=344 Identities=25% Similarity=0.327 Sum_probs=272.8
Q ss_pred CCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecC
Q 004077 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSH 99 (775)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~ 99 (775)
++.+|||.||+.... .+++++. ..+++++|.. +++|+++++.+++++|++ +|++|++++
T Consensus 1 ~~~~~iV~~~~~~~~-----------~~~~~~~-------g~~v~~~~~~-~~~~~~~~~~~~~~~L~~~p~V~~v~~~~ 61 (395)
T 2z2z_A 1 NTIRVIVSVDKAKFN-----------PHEVLGI-------GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH 61 (395)
T ss_dssp CEEEEEEEECTTTCC-----------HHHHHHT-------TCEEEEECSS-SSEEEEEEEGGGHHHHHTSTTEEEEEECC
T ss_pred CcEEEEEEECCCccH-----------HHHHHHc-------CCEEEEEecc-CCEEEEEECHHHHHHHHcCCCceEEEEee
Confidence 357899999986521 2233332 2468899976 999999999999999988 999999999
Q ss_pred CCcccccccCCc-----------cccccchhhhcccCcccccccccccCCCCCc--eEEEEeecCCCCCCCCCCCCCCCC
Q 004077 100 PEKYSLQTTRSW-----------EFVGLDEVAKQNWNHFNMGQDLLSKARYGQD--VIVGLVDNGVWPESKSFSDEGMGP 166 (775)
Q Consensus 100 ~~~~~~~~~~s~-----------~~~gl~~~~~~~~~~~~~~~~~~~~~~~G~G--V~VgVIDtGid~~Hp~f~d~~~~~ 166 (775)
.++++....+ ..|++..+ .. +.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 62 --~~~~~~~~~~~~~~~~~~~~~~~w~~~~i---~~------~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~---- 125 (395)
T 2z2z_A 62 --QAVLLGKPSWLGGGSTQPAQTIPWGIERV---KA------PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---- 125 (395)
T ss_dssp --EEEECCEECC------CCSCCCCHHHHHT---TC------GGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG----
T ss_pred --eecccCCCCcccccccCccccCCcchhhc---CH------HHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc----
Confidence 8776533221 12333322 11 2789988 9999 99999999999999999642
Q ss_pred CCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCC
Q 004077 167 VPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAE 246 (775)
Q Consensus 167 ~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~ 246 (775)
+...++|..+... .+...+.|+.||||||||||+|.. ++
T Consensus 126 -----------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~--------- 164 (395)
T 2z2z_A 126 -----------------------IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-ND--------- 164 (395)
T ss_dssp -----------------------EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SS---------
T ss_pred -----------------------cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CC---------
Confidence 3334444332100 001124678999999999999872 11
Q ss_pred cceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhC--------------------CceEEEEccCCCC
Q 004077 247 GTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRD--------------------GVHVLSISIGTNQ 306 (775)
Q Consensus 247 g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~--------------------gvdVIn~SlG~~~ 306 (775)
..+.||||+|+|+.+|++++. | .+..+++++||+||+++ +++|||||||...
T Consensus 165 ~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~ 236 (395)
T 2z2z_A 165 IGVVGVAPGVQIYSVRVLDAR--G------SGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA 236 (395)
T ss_dssp SSCCCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC
T ss_pred CceEEECCCCEEEEEEEecCC--C------CccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC
Confidence 124699999999999999876 4 46789999999999988 9999999999832
Q ss_pred CCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCc
Q 004077 307 PFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKK 386 (775)
Q Consensus 307 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 386 (775)
....+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 237 ----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~---------------------------- 284 (395)
T 2z2z_A 237 ----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDS---------------------------- 284 (395)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT----------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecC----------------------------
Confidence 245677788889999999999999999876667777799999998542
Q ss_pred ceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCcc
Q 004077 387 MHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHY 466 (775)
Q Consensus 387 ~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 466 (775)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCC
Q 004077 467 LPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSP 546 (775)
Q Consensus 467 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~ 546 (775)
.+.++.||+||| +|+|||++|+|+++.
T Consensus 285 ---------------------------------------~~~~a~fS~~G~----------~v~APG~~i~s~~~~---- 311 (395)
T 2z2z_A 285 ---------------------------------------NDNIASFSNRQP----------EVSAPGVDILSTYPD---- 311 (395)
T ss_dssp ---------------------------------------TSCBCTTSCSSC----------SEEEECSSEEEEETT----
T ss_pred ---------------------------------------CCCCCcccCCCC----------CEEeCCCCeeeecCC----
Confidence 247789999998 689999999999986
Q ss_pred CcccCCccccccEEeeccCchhhHHHHHHHHHHHhCC-------------CCCHHHHHHHHHhcccccCCCCCcccCCCC
Q 004077 547 SKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHP-------------DWSSAAIRSALMTTAWMKNNKALPITNADG 613 (775)
Q Consensus 547 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-------------~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~ 613 (775)
+.|..++|||||||||||++|||+|++| .|++.+||++|++||+++...|
T Consensus 312 ---------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g-------- 374 (395)
T 2z2z_A 312 ---------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTG-------- 374 (395)
T ss_dssp ---------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSS--------
T ss_pred ---------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCC--------
Confidence 6899999999999999999999999999 9999999999999999875332
Q ss_pred CCCCCCccceeccCccccCCC
Q 004077 614 SIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 614 ~~~~~~~~G~G~vn~~~Al~~ 634 (775)
.+..||+|+||+.+|++.
T Consensus 375 ---~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 375 ---WDADYGYGVVRAALAVQA 392 (395)
T ss_dssp ---SBTTTBTCBCCHHHHHHH
T ss_pred ---CCCCccCceeCHHHHHHH
Confidence 467899999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=501.30 Aligned_cols=336 Identities=20% Similarity=0.245 Sum_probs=259.9
Q ss_pred cceEEeeceeEeEEEEEcCHHHHHhhcc---ccceEEecCCCcccccccCCc----------cccccchhhhcccCcccc
Q 004077 63 ASHLYSYKHSINGFSAVLTPDEAARLSE---EVVSVYPSHPEKYSLQTTRSW----------EFVGLDEVAKQNWNHFNM 129 (775)
Q Consensus 63 ~~i~~~y~~~~ng~~~~l~~~~~~~L~~---~V~~V~~~~~~~~~~~~~~s~----------~~~gl~~~~~~~~~~~~~ 129 (775)
.+++++|.. |++|+++++.+++++|++ .|++|++++ .+++...... ..|++..+. ..
T Consensus 66 ~~v~~~~~~-~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~w~l~~i~--~~----- 135 (471)
T 3t41_A 66 LNVVYNIPE-LHVAQIKMTKMHANALANYKNDIKYINATC--STCITSEKTIDRTSNESLFSRQWDMNKIT--NN----- 135 (471)
T ss_dssp CEEEEEEGG-GTEEEEEECHHHHHHHHTCTTTEEEEEECC--SSCBCCCCCCCC---CCSCCCCHHHHTTT--TT-----
T ss_pred CEEEEecCC-ccEEEEEeCHHHHHHHHhcCCCCcEEEecc--eeccccccccccCCCCccccccccHhhcc--Cc-----
Confidence 467888866 999999999999999987 899999999 7776543321 122333220 01
Q ss_pred cccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCC
Q 004077 130 GQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 209 (775)
Q Consensus 130 ~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 209 (775)
..+|..+.+|+||+|||||||||++||+|.+.- |.+. ..++....|.... ...
T Consensus 136 -~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~-------~~~~-------------~~~~~~~~~~~~~------~~~ 188 (471)
T 3t41_A 136 -GASYDDLPKHANTKIAIIDTGVMKNHDDLKNNF-------STDS-------------KNLVPLNGFRGTE------PEE 188 (471)
T ss_dssp -TGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTB-------CTTC-------------EECCCTTCGGGCC------TTC
T ss_pred -HHHHhccCCCCCcEEEEEeCCCCCCChhHhcCc-------ccCC-------------cccccCCCccCCC------ccc
Confidence 168999999999999999999999999997541 1110 0111111111110 111
Q ss_pred CCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 210 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 210 ~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
..+...+.|..||||||||||+|+. .+.||||+|+|+++|++++. .+..+++++||+|
T Consensus 189 ~~~~~~~~d~~gHGT~vAgiiaa~g-------------~~~GvAp~a~l~~~kv~~~~---------~~~~~~i~~ai~~ 246 (471)
T 3t41_A 189 TGDVHDVNDRKGHGTMVSGQTSANG-------------KLIGVAPNNKFTMYRVFGSK---------KTELLWVSKAIVQ 246 (471)
T ss_dssp CCCTTCCCCSSSHHHHHHHHHHCBS-------------SSBCSSTTSCEEEEECCSSS---------CCCHHHHHHHHHH
T ss_pred CCCCCCCcCCCCccchhhheeecCC-------------ceeEECCCCeEEEEEeccCC---------CCcHHHHHHHHHH
Confidence 1223456789999999999999862 25799999999999999864 3789999999999
Q ss_pred HHhCCceEEEEccCCCCCCC------------CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC---------------
Q 004077 290 AIRDGVHVLSISIGTNQPFA------------FNRDGIAIGALNAVKHNILVACSAGNSGPAPSS--------------- 342 (775)
Q Consensus 290 a~~~gvdVIn~SlG~~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------------- 342 (775)
|++++++|||||||...... ...+.+..+++.+.++|++||+||||+|.....
T Consensus 247 a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~ 326 (471)
T 3t41_A 247 AANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326 (471)
T ss_dssp HHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSE
T ss_pred HHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCc
Confidence 99999999999999731111 123567788888999999999999999976432
Q ss_pred ---CCCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCce
Q 004077 343 ---LSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKV 419 (775)
Q Consensus 343 ---~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 419 (775)
.+...+++|+|||++.
T Consensus 327 ~~~~Pa~~~~vitVgA~~~------------------------------------------------------------- 345 (471)
T 3t41_A 327 VKDVPASMDNVVTVGSTDQ------------------------------------------------------------- 345 (471)
T ss_dssp EEEETTTSTTEEEEEEECT-------------------------------------------------------------
T ss_pred eeeccccCCCeEEEEeeCC-------------------------------------------------------------
Confidence 3445688999998542
Q ss_pred eceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceE
Q 004077 420 KGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQART 499 (775)
Q Consensus 420 ~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~ 499 (775)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecCCCCccccccCCCCCCCCCCCCCCceeeCCCc----------------------EEEcccCCCCCCcccCCccccc
Q 004077 500 VLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN----------------------ILAAWSEASSPSKLAFDKRIVK 557 (775)
Q Consensus 500 ~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~----------------------I~sa~~~~~~~~~~~~~~~~~~ 557 (775)
.+.++.||+|||+. |||+|||++ |+++++. +.
T Consensus 346 ------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~ 399 (471)
T 3t41_A 346 ------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GR 399 (471)
T ss_dssp ------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SS
T ss_pred ------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC-------------CC
Confidence 24788999999963 499999987 8998876 68
Q ss_pred cEEeeccCchhhHHHHHHHHHHHhCC-CCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCe
Q 004077 558 YTIFSGTSMSCPHVAAAAALLKAIHP-DWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGL 636 (775)
Q Consensus 558 y~~~sGTSmAaP~VAG~aALl~q~~P-~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 636 (775)
|..++|||||||||||++|||+|++| .++|++||++|++||++... .++..||+|+||+.+|++.+.
T Consensus 400 ~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~------------~~~~~~G~G~vd~~~Al~~a~ 467 (471)
T 3t41_A 400 YIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN------------KPFSRYGHGELDVYKALNVAN 467 (471)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC------------CCHHHHTTCBBCHHHHTTTTC
T ss_pred EEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC------------CCcCccccChhCHHHHHHHHH
Confidence 99999999999999999999999999 89999999999999987643 366789999999999998543
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=493.69 Aligned_cols=378 Identities=20% Similarity=0.268 Sum_probs=274.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|.. +|+||+|||||||||++||+|.+. ++..+++... .
T Consensus 15 ~~w~~--~g~gv~VaViDtGvd~~Hp~l~~~---------------------------~~~~~~~~~~-----------~ 54 (441)
T 1y9z_A 15 VLSDS--QAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-----------G 54 (441)
T ss_dssp SSCCT--TGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-----------C
T ss_pred hhhhc--CCCCcEEEEEcCCCCCCChhHhcC---------------------------cccCcccCCC-----------C
Confidence 78875 478999999999999999999743 1111111110 1
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCC--eEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLA--RLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A--~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
+...+.|..||||||||||+|... ...+.||||+| +|+.+|++++. | .+..+++++||+|
T Consensus 55 ~~~~~~d~~gHGT~vAgiia~~~~----------~~g~~GvAP~a~~~l~~~kv~~~~--g------~~~~~~~~~ai~~ 116 (441)
T 1y9z_A 55 NWYQPGNNNAHGTHVAGTIAAIAN----------NEGVVGVMPNQNANIHIVKVFNEA--G------WGYSSSLVAAIDT 116 (441)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCS----------SSBCCCSSCSSCSEEEEEECEETT--E------ECCSSCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhcccC----------CCCceEecCCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHH
Confidence 123567889999999999999731 12357999995 99999999876 4 4678899999999
Q ss_pred HHhC-CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEe
Q 004077 290 AIRD-GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 290 a~~~-gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
|+++ |++|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+.....+...
T Consensus 117 a~~~~g~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~ 192 (441)
T 1y9z_A 117 CVNSGGANVVTMSLGGSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (441)
T ss_dssp HHHTTCCSEEEECCCBSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HHHhcCCcEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccC
Confidence 9999 9999999999832 2346677888899999999999999998777777777999999999887654443333
Q ss_pred CCCcE-----------------------EeeeeeccCCC---Cccee--eEEecccccCCcCCCCCCCcCCC--CCCCCc
Q 004077 369 GTGME-----------------------IIGKTVTPYNL---KKMHP--LVYAADVVVPGVHQNETNQCLPG--SLTPEK 418 (775)
Q Consensus 369 ~~~~~-----------------------~~g~~~~~~~~---~~~~~--~v~~~~~~~~~~~~~~~~~c~~~--~~~~~~ 418 (775)
+.... +.|.+++.... ...++ +.+..... ..........|... .++..+
T Consensus 193 g~~vdv~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~-~g~~~~~~~~C~~~~~~~~~~~ 271 (441)
T 1y9z_A 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPI-NASATGALAECTVNGTSFSCGN 271 (441)
T ss_dssp CTTEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCC-CCEEEEEEEEEEEETTEEECCC
T ss_pred CCceEEEeccCCeeccccCCCcccceeecccccccccccCcccccccCCcccccccc-ccccccchhccccccccccCCC
Confidence 32211 12222221110 00000 01111100 00001122347643 457789
Q ss_pred eeceEEEEecCCc-----chhhhhhHhhhcCceEEEEecCCCCCCc------cccCCccccEEEEeHHHHHHHHHHHhcC
Q 004077 419 VKGKIVLCMRGSG-----FKLSKGMEVKRAGGVGLILGNSPANGNE------YSYDAHYLPATAVLYDDAIKIHEYIKST 487 (775)
Q Consensus 419 ~~gkivl~~~g~~-----~~~~k~~~~~~~Ga~g~i~~n~~~~~~~------~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 487 (775)
++|||++|+|+.+ .+.+|..+++++|+.++|++|+...... .......+|.++++.++|..|++|+...
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~ 351 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS 351 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC
Confidence 9999999999876 7889999999999999999998542211 1223468999999999999998865321
Q ss_pred CCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCch
Q 004077 488 NNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMS 567 (775)
Q Consensus 488 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 567 (775)
+ .+ ++... +.|..+||||||
T Consensus 352 ----~-----------------------------------t~--------~~~~~-------------~~y~~~sGTSmA 371 (441)
T 1y9z_A 352 ----T-----------------------------------TV--------SNQGN-------------QDYEYYNGTSMA 371 (441)
T ss_dssp ----E-----------------------------------EE--------EEEEE-------------ESEEEECSHHHH
T ss_pred ----c-----------------------------------cc--------ccccC-------------CCceeecccccC
Confidence 0 01 11111 689999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeecchhhHHH
Q 004077 568 CPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLL 647 (775)
Q Consensus 568 aP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~ 647 (775)
||||||++|||+|+||+|+|++||++||+||++++..+ .+.+||+|+||+.+|+ ||+.
T Consensus 372 aP~VAG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g-----------~~~~~G~G~vn~~~A~-----------~~~~ 429 (441)
T 1y9z_A 372 TPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAG-----------RDNQTGYGMINAVAAK-----------AYLD 429 (441)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS-----------CBTTTBTCBCCHHHHH-----------HHHH
T ss_pred CcccchHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC-----------CcccccccccCHHHHH-----------HHHH
Confidence 99999999999999999999999999999999886543 3567999999999995 6899
Q ss_pred hhhcCCC
Q 004077 648 YLCSHGF 654 (775)
Q Consensus 648 ~~~~~~~ 654 (775)
|||+.++
T Consensus 430 ~lc~~~~ 436 (441)
T 1y9z_A 430 ESCTGPT 436 (441)
T ss_dssp HCTTCC-
T ss_pred hhhcCCC
Confidence 9998865
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=491.40 Aligned_cols=375 Identities=22% Similarity=0.210 Sum_probs=267.7
Q ss_pred CCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCH---HH-HHhhc---c-ccc
Q 004077 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTP---DE-AARLS---E-EVV 93 (775)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~---~~-~~~L~---~-~V~ 93 (775)
...+|||.||+.. ...++++.+ ..++.+++.. +++++++++. ++ +++|+ . +|+
T Consensus 30 ~~~~~IV~~k~~~-----------~~~~~~~~~-------g~~v~~~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~V~ 90 (671)
T 1r6v_A 30 TEGKILVGYNDRS-----------EVDKIVKAV-------NGKVVLELPQ-IKVVSIKLNGMTVKQAYDKIKALALKGIR 90 (671)
T ss_dssp CTTEEEEEESSHH-----------HHHHHHHHH-------TCEEEEEEGG-GTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred CCccEEEEECCCc-----------CHHHHHHhc-------CCeEEEEcCC-CcEEEEEeCCcCHHHHHHHHHhccCCCce
Confidence 4579999999643 112223222 2357777766 8999999865 33 45565 2 999
Q ss_pred eEEecCCCccccccc----CC-----------------------ccccccchhhhcccCcccccccc-cccCCCCCceEE
Q 004077 94 SVYPSHPEKYSLQTT----RS-----------------------WEFVGLDEVAKQNWNHFNMGQDL-LSKARYGQDVIV 145 (775)
Q Consensus 94 ~V~~~~~~~~~~~~~----~s-----------------------~~~~gl~~~~~~~~~~~~~~~~~-~~~~~~G~GV~V 145 (775)
+|||+. .+++... .. ...|++..+ + .+.+ |.. ++|+||+|
T Consensus 91 ~vepd~--~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I---~------~~~a~w~~-~tG~gV~V 158 (671)
T 1r6v_A 91 YVEPSY--KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAI---G------VTQQLWEE-ASGTNIIV 158 (671)
T ss_dssp EEECCB--CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHT---T------CCHHHHHH-CSCTTCEE
T ss_pred EEecCe--EEEeccccccCcccccccccccccccccccccccccccCCchhcc---C------Cchhhhhc-cCCCCCEE
Confidence 999998 6554310 00 011222221 1 1256 887 89999999
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCcccc
Q 004077 146 GLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTH 225 (775)
Q Consensus 146 gVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTH 225 (775)
||||||||++||+|.++- +.+ ...+.+... ....+..|..|||||
T Consensus 159 AVIDTGVd~~HpdL~~~~-------~~g-------------------~~~~~~~~~---------p~~~d~~d~~gHGTh 203 (671)
T 1r6v_A 159 AVVDTGVDGTHPDLEGQV-------IAG-------------------YRPAFDEEL---------PAGTDSSYGGSAGTH 203 (671)
T ss_dssp EEEESCCBTTSGGGTTTB-------CCE-------------------EEGGGTEEE---------CTTCBCCTTCSHHHH
T ss_pred EEEeCCCCCCCccccccE-------Eec-------------------ccccCCCcC---------CCCCCCccCCCcchh
Confidence 999999999999997531 111 111111000 001134467899999
Q ss_pred chhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecC----CCCCCccCCCCCCHHHHHHHHHHHHhCCceEEEEc
Q 004077 226 TASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWA----TPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSIS 301 (775)
Q Consensus 226 VAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~----~~~g~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 301 (775)
|||||||.. ++ ..+.||||+|+|+.+|++++ ...+ ....+.+++||+||+++|++|||||
T Consensus 204 VAGiIAa~~-ng---------~gv~GVAP~A~I~~vkv~~~~~~~~g~g------~~s~~~i~~ai~~A~~~gadVIN~S 267 (671)
T 1r6v_A 204 VAGTIAAKK-DG---------KGIVGVAPGAKIMPIVIFDDPALVGGNG------YVGDDYVAAGIIWATDHGAKVMNHS 267 (671)
T ss_dssp HHHHHHCCC-SS---------SSCCCSCTTSEEEEEESBCCHHHHCTTS------BCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred hhhhhhccC-CC---------CceEEECCCCEEEEEEeccCccccCCCC------ccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 999999873 11 12579999999999999976 1112 3456779999999999999999999
Q ss_pred cCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccccceEeCCCcEEeeeeec
Q 004077 302 IGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVT 380 (775)
Q Consensus 302 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~ 380 (775)
||+.. ....+..++++|.++|++||+||||+|.+. ..++...|++|+|||++.+..
T Consensus 268 lG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------- 324 (671)
T 1r6v_A 268 WGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------- 324 (671)
T ss_dssp EEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-------------------
T ss_pred CCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-------------------
Confidence 99832 346778888999999999999999999764 344556689999998643110
Q ss_pred cCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc
Q 004077 381 PYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY 460 (775)
Q Consensus 381 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~ 460 (775)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcc
Q 004077 461 SYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAW 540 (775)
Q Consensus 461 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~ 540 (775)
...++.||++||.. ||+|||++|++++
T Consensus 325 ---------------------------------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~ 351 (671)
T 1r6v_A 325 ---------------------------------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTV 351 (671)
T ss_dssp ---------------------------------------------EEEECSSSCCCTTE--------EEEEECSSEEEEC
T ss_pred ---------------------------------------------ceeeccccCCCCCe--------eEEecCCCEEeec
Confidence 01478999999976 9999999999998
Q ss_pred cCCCCCCc-----ccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCC
Q 004077 541 SEASSPSK-----LAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSI 615 (775)
Q Consensus 541 ~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~ 615 (775)
+....... .......+.|..++|||||||||||++|||+|++|++++++||++|++||+++...|
T Consensus 352 p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g---------- 421 (671)
T 1r6v_A 352 PGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG---------- 421 (671)
T ss_dssp CCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSS----------
T ss_pred CCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCC----------
Confidence 76321100 001112357999999999999999999999999999999999999999999875432
Q ss_pred CCCCccceeccCccccCCCCeeeecchhhH
Q 004077 616 ATPFSFGSGHFRPTKAADPGLVYDASYEDY 645 (775)
Q Consensus 616 ~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~ 645 (775)
.+..+|+|+||+.+|++..|..+....+|
T Consensus 422 -~d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 422 -WDHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp -CBTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred -CCCCcccceeCHHHHhhhhcCCCCCccce
Confidence 45689999999999999877665444343
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=507.73 Aligned_cols=337 Identities=21% Similarity=0.214 Sum_probs=54.0
Q ss_pred eEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecCCCc
Q 004077 25 VYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSHPEK 102 (775)
Q Consensus 25 ~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~~~~ 102 (775)
+|||+||++... ...+.+.+.+.....+.. ...++++.|+++|+||+++++.+++++|++ +|++|++++ .
T Consensus 77 ~YIV~lk~~~~~-----~~~~~~~~~l~a~~~~~g-~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~--~ 148 (692)
T 2p4e_P 77 TYVVVLKEETHL-----SQSERTARRLQAQAARRG-YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS--S 148 (692)
T ss_dssp EEEEEECTTCCH-----HHHHHHHHHHHHHHHHTT-CCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEE--E
T ss_pred cEEEEECCCCCH-----HHHHHHHHHHHHHHhhcc-cccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEecc--c
Confidence 899999988732 223334444443322111 124689999999999999999999999999 999999999 7
Q ss_pred ccccccCCccccccchhhhcc-cCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCcc
Q 004077 103 YSLQTTRSWEFVGLDEVAKQN-WNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAF 181 (775)
Q Consensus 103 ~~~~~~~s~~~~gl~~~~~~~-~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~ 181 (775)
+..+ ... |++..+.... .. ..|..+.+|+||+|||||||||++||+|.+... |. +|
T Consensus 149 v~~~-~~p---WgL~~i~~~~~~~------~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~ 205 (692)
T 2p4e_P 149 VFAQ-SIP---WNLERITPPRYRA------DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DF 205 (692)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred cccC-CCC---cchhhcccccccc------cccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------cc
Confidence 7542 222 4665542211 11 468888999999999999999999999975410 10 01
Q ss_pred CcccccceeeeeeecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEE
Q 004077 182 NSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIY 261 (775)
Q Consensus 182 ~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~ 261 (775)
+ .+.+.. + ......+.|..||||||||||+|+. .||||+|+|+++
T Consensus 206 ~------------~~~d~d----g----~~~~~~~~D~~GHGTHVAGiIAg~~---------------~GVAP~A~L~~v 250 (692)
T 2p4e_P 206 E------------NVPEED----G----TRFHRQASKCDSHGTHLAGVVSGRD---------------AGVAKGASMRSL 250 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c------------cccCCC----C----CcccCCCCCCCCcHHHhhhHhhcCC---------------CccCCCCEEEEE
Confidence 0 000000 0 0001246789999999999999862 499999999999
Q ss_pred EeecCCCCCCccCCCCCCHHHHHHHHHHHHhC------CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCC
Q 004077 262 KACWATPKASKAAGNTCFEADMLAAIDDAIRD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGN 335 (775)
Q Consensus 262 kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN 335 (775)
||+++. | .++.+++++||+|++++ +++|||||||+. ....+..+++++.++|++||+||||
T Consensus 251 KVl~~~--G------~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~-----~s~~l~~Ai~~A~~~GVlvVaAAGN 317 (692)
T 2p4e_P 251 RVLNCQ--G------KGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGN 317 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeecCC--C------CCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCC-----CcHHHHHHHHHHHHCCCEEEEECCC
Confidence 999876 4 46788999999999986 899999999982 2345666778889999999999999
Q ss_pred CCCCCCCC-CCCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCC
Q 004077 336 SGPAPSSL-SNLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSL 414 (775)
Q Consensus 336 ~G~~~~~~-~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~ 414 (775)
+|.+.... +...|++|+|||++.+...
T Consensus 318 ~G~~~~~~sPA~~~~vItVGA~d~~~~~---------------------------------------------------- 345 (692)
T 2p4e_P 318 FRDDACLYSPASAPEVITVGATNAQDQP---------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCccCcccCCCEEEEEEEcCCCCc----------------------------------------------------
Confidence 99764333 4566999999997532100
Q ss_pred CCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEE
Q 004077 415 TPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAII 494 (775)
Q Consensus 415 ~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 494 (775)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHH
Q 004077 495 KQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAA 574 (775)
Q Consensus 495 ~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 574 (775)
...-+.||+|||. |||+|||++|+++++... ..|..++|||||||||||+
T Consensus 346 -----------a~~ss~fSn~G~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~ 395 (692)
T 2p4e_P 346 -----------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGI 395 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cccccccCCCCCc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHH
Confidence 0001238999984 499999999999987621 4789999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcccccC
Q 004077 575 AALLKAIHPDWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 575 aALl~q~~P~~s~~~ik~~L~~TA~~~~ 602 (775)
+|||+|++|+|+|++||++|++||.+..
T Consensus 396 aALlls~~P~ltp~qVk~~L~~tA~~~~ 423 (692)
T 2p4e_P 396 AAMMLSAEPELTLAELRQRLIHFSAKDV 423 (692)
T ss_dssp ----------------------------
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999999998653
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=436.24 Aligned_cols=258 Identities=26% Similarity=0.334 Sum_probs=211.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+..|+||+|||||||||++||+|.+. ++..++|.++
T Consensus 22 ~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~------------ 62 (280)
T 1dbi_A 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT------------
T ss_pred HHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCC------------
Confidence 8899988888999999999999999999642 3444555432
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|...+. ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 63 -~~~~~d~~gHGT~vAgiia~~~~~~---------~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 124 (280)
T 1dbi_A 63 -DYDPMDLNNHGTHVAGIAAAETNNA---------TGIAGMAPNTRILAVRALDRN--G------SGTLSDIADAIIYAA 124 (280)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCSSS---------SSCCCSSSSCEEEEEECCCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhCcCCCC---------CcceEeCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 1245788999999999999974322 235699999999999999876 4 468899999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
++|++|||||||... ....+..+++++.++|++||+||||+|......+...+++|+|||++.
T Consensus 125 ~~g~~Vin~S~G~~~----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T 1dbi_A 125 DSGAEVINLSLGCDC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HTTCSEEEECCSSCC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HCCCCEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------
Confidence 999999999999832 346778888899999999999999999766566667799999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++||.. ||+|
T Consensus 188 ------------------------------------------------------~~~~~~~S~~G~~~--------dv~A 205 (280)
T 1dbi_A 188 ------------------------------------------------------YDRLASFSNYGTWV--------DVVA 205 (280)
T ss_dssp ------------------------------------------------------TSCBCTTBCCSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCCCCCCCCc--------eEEE
Confidence 24678999999865 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||++|+++++. +.|..++|||||||||||++|||++ |.+++++||++|++||+++..
T Consensus 206 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-------- 262 (280)
T 1dbi_A 206 PGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-------- 262 (280)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT--------
T ss_pred ecCCeEeecCC-------------CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC--------
Confidence 99999999876 6899999999999999999999987 899999999999999998753
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
....||+|+||+.+|++
T Consensus 263 -----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcccCCEECHHHHhc
Confidence 23569999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-52 Score=437.71 Aligned_cols=256 Identities=28% Similarity=0.436 Sum_probs=214.4
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|+|||||||++||+|+ +...++|..+
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~------------ 53 (274)
T 1r0r_E 15 KVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCC------------
Confidence 78999999999999999999999999994 1223334322
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|.. + ...+.||||+|+|+.+|+++.. + .+..+++++||+||+
T Consensus 54 -~~~~~d~~gHGT~vAgiia~~~-~---------~~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~i~~ai~~a~ 114 (274)
T 1r0r_E 54 -EAYNTDGNGHGTHVAGTVAALD-N---------TTGVLGVAPSVSLYAVKVLNSS--G------SGSYSGIVSGIEWAT 114 (274)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCS-S---------SSBCCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred -CCCCCCCCCCHHHHHHHHHccC-C---------CCceEEECCCCEEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1135678999999999999862 1 1125799999999999999876 4 467889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccccccccccceE
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP----SSLSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
+++++|||||||... ....+..+++++.++|++||+||||+|... ..++...+++|+|||++.
T Consensus 115 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 181 (274)
T 1r0r_E 115 TNGMDVINMSLGGAS----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp HTTCSEEEECEEBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred HcCCCEEEeCCCCCC----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC---------
Confidence 999999999999832 246778888999999999999999999753 223445689999998542
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||.+
T Consensus 182 ----------------------------------------------------------~~~~~~~S~~G~~~-------- 195 (274)
T 1r0r_E 182 ----------------------------------------------------------NSNRASFSSVGAEL-------- 195 (274)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTE--------
T ss_pred ----------------------------------------------------------CCCcCccCCCCCCc--------
Confidence 24678999999954
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|.+++++||++|++||+++.
T Consensus 196 di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----- 257 (274)
T 1r0r_E 196 EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----- 257 (274)
T ss_dssp EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----
T ss_pred eEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-----
Confidence 999999999999876 68999999999999999999999999999999999999999999763
Q ss_pred ccCCCCCCCCCCccceeccCccccCC
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
++..||+|+||+.+|++
T Consensus 258 ---------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCCcccCccCHHHHhC
Confidence 35679999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-52 Score=434.61 Aligned_cols=255 Identities=30% Similarity=0.438 Sum_probs=216.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|+|||||| .+||+|+ +...++|..+
T Consensus 15 ~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~------------ 52 (269)
T 1gci_A 15 AAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPG------------ 52 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCC------------
Confidence 789999999999999999999 8999994 1223334322
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|.. + ...+.||||+|+|+.+|+++.. + .+..+++++||+|++
T Consensus 53 -~~~~~d~~gHGT~vAgiia~~~-~---------~~~~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 113 (269)
T 1gci_A 53 -EPSTQDGNGHGTHVAGTIAALN-N---------SIGVLGVAPSAELYAVKVLGAS--G------SGSVSSIAQGLEWAG 113 (269)
T ss_dssp -CCSCSCSSSHHHHHHHHHHCCC-S---------SSBCCCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCChHHHHHHHhcCc-C---------CCCcEEeCCCCEEEEEEeECCC--C------CcCHHHHHHHHHHHH
Confidence 1235688999999999999862 1 1125799999999999999876 4 468899999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+++++|||||||... ....+..+++++.++|++||+||||+|.....++...+++|+|||++.
T Consensus 114 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T 1gci_A 114 NNGMHVANLSLGSPS----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred HCCCeEEEeCCCCCC----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------
Confidence 999999999999832 245778888899999999999999999876666667799999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++||.+ ||+|
T Consensus 177 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 194 (269)
T 1gci_A 177 ------------------------------------------------------NNNRASFSQYGAGL--------DIVA 194 (269)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCCCCCCCCCCCc--------ceEe
Confidence 24678999999975 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||++|+++++. +.|..++|||||||||||++|||+|++|+|++++||++|++||+++.
T Consensus 195 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g--------- 252 (269)
T 1gci_A 195 PGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------- 252 (269)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------
T ss_pred cCCCeEeecCC-------------CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC---------
Confidence 99999999876 68999999999999999999999999999999999999999999763
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
+++.||+|+||+.+|++
T Consensus 253 -----~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCccCHHHHcC
Confidence 35679999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=435.93 Aligned_cols=258 Identities=30% Similarity=0.433 Sum_probs=215.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|+. ...++|..+
T Consensus 15 ~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~------------ 53 (281)
T 1to2_E 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPS------------ 53 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTT------------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCC------------
Confidence 789999999999999999999999999941 122333221
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+.....|..||||||||||+|.. + ...+.||||+|+|+.+|+++.. + .+..++++++|+|++
T Consensus 54 ~~~~~~d~~gHGT~vAgiia~~~-~---------~~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 115 (281)
T 1to2_E 54 ETNPFQDNNSHGTHVAGTVAALN-N---------SIGVLGVAPSASLYAVKVLGAD--G------SGQYSWIINGIEWAI 115 (281)
T ss_dssp CCCTTCCSSSHHHHHHHHHHCCS-S---------SSSBCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhccC-C---------CCcceeeCCCCEEEEEEEeCCC--C------CccHHHHHHHHHHHH
Confidence 11123578999999999999862 1 1125799999999999999876 4 467899999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC----CCCCCCCCceEEecccccccccccceE
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP----SSLSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
+++++|||||||... ....+..+++++.++|++||+||||+|... ..++...|++|+|||++.
T Consensus 116 ~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------- 182 (281)
T 1to2_E 116 ANNMDVINMSLGGPS----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp HTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred HCCCcEEEECCcCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------
Confidence 999999999999832 246788888999999999999999999752 233445589999998542
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||..
T Consensus 183 ----------------------------------------------------------~~~~~~fS~~G~~~-------- 196 (281)
T 1to2_E 183 ----------------------------------------------------------SNQRASFSSVGPEL-------- 196 (281)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTC--------
T ss_pred ----------------------------------------------------------CCCcCCcCCCCCCc--------
Confidence 24678999999965
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
||+|||++|+++++. +.|..++|||||||||||++|||+|++|.|++++||++|++||+++.
T Consensus 197 di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g----- 258 (281)
T 1to2_E 197 DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----- 258 (281)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----
T ss_pred eEEecCCCeEeecCC-------------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-----
Confidence 999999999999876 68999999999999999999999999999999999999999999763
Q ss_pred ccCCCCCCCCCCccceeccCccccCCC
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
+++.||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccceecHHHHhhh
Confidence 356799999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-53 Score=464.64 Aligned_cols=308 Identities=19% Similarity=0.230 Sum_probs=197.9
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCccccccee----eeeeecccccccccCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKI----IGARYYLKGFEQLYGPL 207 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~ki----ig~~~~~~~~~~~~~~~ 207 (775)
++|..+..|++|+|||||||||++||+|++..+.+....|+..++....... ..+..+ ...+.+......
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 95 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDY-AAFQSIRDQGLKGKEKEEALEA----- 95 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHH-HHHHHHHHHTCCSHHHHHHHHH-----
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccc-cccccccCcccccccccccccc-----
Confidence 7899999999999999999999999999887665666667654432110000 000000 000000000000
Q ss_pred CCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHH
Q 004077 208 NATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI 287 (775)
Q Consensus 208 ~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai 287 (775)
...+..++.|.+||||||||||||+.. ..+.||||+|+|+.+|++.... + ..+..+...+++++|
T Consensus 96 -~~~~~~~~~D~~gHGThVAGiiag~~~-----------~g~~GvAp~a~l~~~k~~~~~~-~--~~~~~~~~~~~~~ai 160 (357)
T 4h6x_A 96 -VIPDTKDRIVLNDHACHVTSTIVGQEH-----------SPVFGIAPNCRVINMPQDAVIR-G--NYDDVMSPLNLARAI 160 (357)
T ss_dssp -HCTTTHHHHHHHHHHHHHHHHHHCCTT-----------SSCCCSCTTSEEEEEECTTC-------------CHHHHHHH
T ss_pred -ccCCCCCCcCCCCcHHHHHHHHhccCC-----------CCceEeeccceEEeeeecccCC-C--CccccccHHHHHHHH
Confidence 001122455778999999999998731 1357999999999999975431 1 011134567789999
Q ss_pred HHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceE
Q 004077 288 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 288 ~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
+||++.|++|||||||.........+.+..++.++.++|++||+||||+|.....++...|++|+|||++.
T Consensus 161 ~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~--------- 231 (357)
T 4h6x_A 161 DLALELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV--------- 231 (357)
T ss_dssp HHHHHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT---------
T ss_pred HHHHHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc---------
Confidence 99999999999999998544455667888888999999999999999999776666677799999998542
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.|||||+. ..||
T Consensus 232 ----------------------------------------------------------~~~~~~fSn~G~~-----~~~~ 248 (357)
T 4h6x_A 232 ----------------------------------------------------------DGTPCHFSNWGGN-----NTKE 248 (357)
T ss_dssp ----------------------------------------------------------TSSBCTTCC---C-----TTTT
T ss_pred ----------------------------------------------------------CCcccccccCCCC-----CCcc
Confidence 3478899999974 4589
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhcccccCC
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNN 603 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~ 603 (775)
||+|||++|+++++.. +.|..++|||||||||||++|||+++ +|.|++++||++|++||++++.
T Consensus 249 di~APG~~i~s~~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~ 316 (357)
T 4h6x_A 249 GILAPGEEILGAQPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDP 316 (357)
T ss_dssp EEEEECSSEEECCTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC------
T ss_pred ceeecCCCeEeccCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCC
Confidence 9999999999998762 46778999999999999999999964 5689999999999999998754
Q ss_pred CCCcccCCCCCCCCCCccceeccCccccCC
Q 004077 604 KALPITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 604 ~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
. ....+.+||+|+||+.+|++
T Consensus 317 ~---------~~~~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 317 E---------VVEEPERCLRGFVNIPGAMK 337 (357)
T ss_dssp -----------------CTTCBCCHHHHHH
T ss_pred C---------CCCCcccceeEEecHHHHHH
Confidence 2 12356789999999999987
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-51 Score=442.34 Aligned_cols=264 Identities=27% Similarity=0.387 Sum_probs=214.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+ +++..++|..++..
T Consensus 32 ~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~~--------- 75 (327)
T 2x8j_A 32 AVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYGG--------- 75 (327)
T ss_dssp HHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGGG---------
T ss_pred HHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCCC---------
Confidence 899999999999999999999999999963 24455555544211
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+.....|..||||||||||+|+. ++ ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 76 ~~~~~~d~~gHGT~VAgiia~~~-~~---------~g~~GvAp~a~l~~~kv~~~~--g------~~~~~~i~~ai~~a~ 137 (327)
T 2x8j_A 76 DETNFSDNNGHGTHVAGTVAAAE-TG---------SGVVGVAPKADLFIIKALSGD--G------SGEMGWIAKAIRYAV 137 (327)
T ss_dssp CTTCCCCSSSHHHHHHHHHHCCC-CS---------SBCCCSSTTCEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHhccC-CC---------CCcEeeCCCCEEEEEEeECCC--C------CcCHHHHHHHHHHHH
Confidence 11235688999999999999872 11 125799999999999999876 4 467899999999999
Q ss_pred h------CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-----CCCCCCCCceEEeccccccc
Q 004077 292 R------DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-----SSLSNLAPWLITVGAGSLDR 360 (775)
Q Consensus 292 ~------~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~~p~vitVgAs~~~~ 360 (775)
+ .+++|||||||... ....+..+++++.++|++||+||||+|... ..++...+++|+|||++.
T Consensus 138 ~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~-- 211 (327)
T 2x8j_A 138 DWRGPKGEQMRIITMSLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF-- 211 (327)
T ss_dssp HCCCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT--
T ss_pred hhcccccCCceEEEECCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC--
Confidence 9 89999999999832 246677888899999999999999999652 233445689999998542
Q ss_pred ccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHh
Q 004077 361 DFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEV 440 (775)
Q Consensus 361 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~ 440 (775)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCC
Q 004077 441 KRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNAL 520 (775)
Q Consensus 441 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~ 520 (775)
.+.++.||++||.+
T Consensus 212 -----------------------------------------------------------------~~~~~~fS~~G~~~- 225 (327)
T 2x8j_A 212 -----------------------------------------------------------------DLRLSDFTNTNEEI- 225 (327)
T ss_dssp -----------------------------------------------------------------TCCBSCC---CCCC-
T ss_pred -----------------------------------------------------------------CCCCCCccCCCCCc-
Confidence 24778999999854
Q ss_pred CCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh-----CCCCCHHHHHHHHH
Q 004077 521 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI-----HPDWSSAAIRSALM 595 (775)
Q Consensus 521 ~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~~s~~~ik~~L~ 595 (775)
||+|||++|+++++. +.|..++|||||||+|||++|||+|+ +|.+++.+||++|+
T Consensus 226 -------di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~ 285 (327)
T 2x8j_A 226 -------DIVAPGVGIKSTYLD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLV 285 (327)
T ss_dssp -------SEEEECSSEEEECST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred -------eEecCcCceEeecCC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHH
Confidence 999999999999876 68999999999999999999999999 99999999999999
Q ss_pred hcccccCCCCCcccCCCCCCCCCCccceeccCccccCCC
Q 004077 596 TTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 596 ~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
+||++... ++..+|+|+||+.+|++.
T Consensus 286 ~tA~~~g~-------------~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 286 RRATPIGF-------------TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp TTEECCSS-------------CHHHHTTCEECTTHHHHH
T ss_pred HhCccCCC-------------CCCceeeeEECHHHHHHh
Confidence 99997641 467899999999999873
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-51 Score=429.28 Aligned_cols=257 Identities=26% Similarity=0.372 Sum_probs=216.5
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|... +|+||+|||||||||++||+|.+ +++..++|.++
T Consensus 22 ~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~------------ 61 (279)
T 1thm_A 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN------------ 61 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT------------
T ss_pred HHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCC------------
Confidence 788876 79999999999999999999964 23444555442
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|...++ ..+.||||+|+|+.+|+++.. | .+..+++++||+||+
T Consensus 62 -~~~~~d~~gHGT~vAgiia~~~~n~---------~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 123 (279)
T 1thm_A 62 -DSTPQNGNGHGTHCAGIAAAVTNNS---------TGIAGTAPKASILAVRVLDNS--G------SGTWTAVANGITYAA 123 (279)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCSSS---------SSCCCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhCccCCC---------CccEEeCCCCEEEEEEeeCCC--C------CccHHHHHHHHHHHH
Confidence 1245788999999999999974322 235699999999999999876 4 467889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
++|++|||||||... ....+..+++++.++|++||+||||+|.....++...+++|+|||++.
T Consensus 124 ~~g~~Vin~S~G~~~----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 186 (279)
T 1thm_A 124 DQGAKVISLSLGGTV----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred HCCCCEEEEecCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------
Confidence 999999999999832 346778888899999999999999999876666777799999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++||.+ ||+|
T Consensus 187 ------------------------------------------------------~~~~~~fS~~G~~~--------dv~A 204 (279)
T 1thm_A 187 ------------------------------------------------------NDNKSSFSTYGSWV--------DVAA 204 (279)
T ss_dssp ------------------------------------------------------TSCBCTTCCCCTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCce--------EEEE
Confidence 24678999999865 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||++|+++++. +.|..++|||||||||||++||| ++|.+++++||++|++||+++...
T Consensus 205 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~------- 262 (279)
T 1thm_A 205 PGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT------- 262 (279)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-------
T ss_pred cCCCeEEEeCC-------------CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-------
Confidence 99999999976 68999999999999999999999 589999999999999999987643
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
...||+|+||+.+|++
T Consensus 263 ------~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 263 ------GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ------TTTBSSEECCHHHHHH
T ss_pred ------CccccCCeeCHHHHhc
Confidence 2468999999999975
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=435.41 Aligned_cols=267 Identities=24% Similarity=0.269 Sum_probs=211.5
Q ss_pred CCCC-CceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCCC
Q 004077 137 ARYG-QDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRS 215 (775)
Q Consensus 137 ~~~G-~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 215 (775)
.++| +||+|||||||||++||+|.+.. +..+.+... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~---------------------------~~~~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD---------------------------LTVLPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE---------------------------EEECCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe---------------------------eecCcCCCC-----------CCCCC
Confidence 4678 79999999999999999997431 111111111 01122
Q ss_pred CCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHhCCc
Q 004077 216 PRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGV 295 (775)
Q Consensus 216 ~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~~gv 295 (775)
..|..||||||||||+|+.. ..+.||||+|+|+.+|++.+... .....++++||+||+++++
T Consensus 45 d~~~~gHGT~VAGiiag~~~-----------~~~~GvAp~a~l~~~kv~~~~~~-------~~~~~~i~~ai~~a~~~~~ 106 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPE-----------TSVPGIAPQCRGLIVPIFSDDRR-------RITQLDLARGIERAVNAGA 106 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTT-----------SSSCCSSTTSEEEEEECSCSSSS-------CCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccceeehhhccCC-----------ceeeeeccccceEeeEeeccccc-------cchHHHHHHHHHHhhccCC
Confidence 33567999999999998731 13579999999999999876532 3678889999999999999
Q ss_pred eEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCCcEEe
Q 004077 296 HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTGMEII 375 (775)
Q Consensus 296 dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~ 375 (775)
+|||||||...........+..++..+.++|+++|+||||+|......+...+++|+|||++.
T Consensus 107 ~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~----------------- 169 (282)
T 3zxy_A 107 HIINISGGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD----------------- 169 (282)
T ss_dssp SEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT-----------------
T ss_pred eEEeccCccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC-----------------
Confidence 999999997433344456678888899999999999999999776666667799999998542
Q ss_pred eeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCC
Q 004077 376 GKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPA 455 (775)
Q Consensus 376 g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~ 455 (775)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceeeCCCc
Q 004077 456 NGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLN 535 (775)
Q Consensus 456 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~ 535 (775)
.+.++.||+||+. ..||||+|||.+
T Consensus 170 --------------------------------------------------~~~~~~~S~~~~~-----~~~~di~ApG~~ 194 (282)
T 3zxy_A 170 --------------------------------------------------HGHPLDFSNWGST-----YEQQGILAPGED 194 (282)
T ss_dssp --------------------------------------------------TSCBCSSSCCCHH-----HHHHEEEEECSS
T ss_pred --------------------------------------------------CCccccccCCCCC-----ccccceeccCcc
Confidence 2467889999874 468899999999
Q ss_pred EEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC----CCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 536 ILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH----PDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 536 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~----P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
|+++++. +.|..++|||||||||||++|||+|++ |.++|++||++|++||++++..
T Consensus 195 i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~------- 254 (282)
T 3zxy_A 195 ILGAKPG-------------GGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD------- 254 (282)
T ss_dssp EEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC----------
T ss_pred eeeecCC-------------CceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-------
Confidence 9999887 789999999999999999999999975 7899999999999999987532
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.+.....+|+|+||+.+|++
T Consensus 255 --~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 255 --APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp ------CGGGTTCBCCHHHHHH
T ss_pred --CCCccCceeeeEeCHHHHHH
Confidence 23356679999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-50 Score=429.26 Aligned_cols=280 Identities=27% Similarity=0.344 Sum_probs=221.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+. +...++|..... .
T Consensus 17 ~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~---------~ 60 (310)
T 2ixt_A 17 DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT---------P 60 (310)
T ss_dssp TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS---------C
T ss_pred hhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC---------C
Confidence 8999999999999999999999999999642 333444543211 0
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|..||||||||||+|... .....+.||||+|+|+.+|++.+. + .+..+++++||+|++
T Consensus 61 ~~~~~~d~~gHGT~vAgiia~~~~--------~n~~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~~~~ai~~a~ 124 (310)
T 2ixt_A 61 INNSCTDRNGHGTHVAGTALADGG--------SDQAGIYGVAPDADLWAYKVLLDS--G------SGYSDDIAAAIRHAA 124 (310)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBCC--------TTSCSCBCSCTTSEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHhccCC--------CCCCceEEECCCCEEEEEEEEcCC--C------CCcHHHHHHHHHHHH
Confidence 112356789999999999998731 222335799999999999999876 4 468899999999999
Q ss_pred hCCc-----eEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC--CCCCCCCceEEeccccccccccc
Q 004077 292 RDGV-----HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS--SLSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 292 ~~gv-----dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgAs~~~~~~~~ 364 (775)
++++ +|||||||... ....+..+++++.++|++||+||||+|.... .++...+++|+|||++...
T Consensus 125 ~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---- 196 (310)
T 2ixt_A 125 DQATATGTKTIISMSLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---- 196 (310)
T ss_dssp HHHHHHTCCEEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----
T ss_pred HhhhccCCCeEEEEcCCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----
Confidence 9988 99999999932 2466778888999999999999999997643 3344568999999854210
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCC--ccccccCCCCCCCC-
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAP--FMANFTSRGPNALD- 521 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSS~GP~~~~- 521 (775)
..+ .++.||++||....
T Consensus 197 ------------------------------------------------------------~~g~~~~~~~S~~G~~~~~g 216 (310)
T 2ixt_A 197 ------------------------------------------------------------QNGTYRVADYSSRGYISTAG 216 (310)
T ss_dssp ------------------------------------------------------------ETTEEEECTTSCCCCTTTTT
T ss_pred ------------------------------------------------------------cCCCeeeccccCCCCccCCc
Confidence 012 67889999995421
Q ss_pred ---CCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 004077 522 ---PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598 (775)
Q Consensus 522 ---d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA 598 (775)
..+.||||+|||++|+++++. +.|..++|||||||||||++|||+|++|.+++++||++|++||
T Consensus 217 ~~~~~~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA 283 (310)
T 2ixt_A 217 DYVIQEGDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283 (310)
T ss_dssp SSSCCTTCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred cccccCCCeeEECCCCCEeeecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Confidence 123599999999999999876 6899999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCCCCccceeccCc
Q 004077 599 WMKNNKALPITNADGSIATPFSFGSGHFRP 628 (775)
Q Consensus 599 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 628 (775)
++.+..+. .......++.+|+|++|+
T Consensus 284 ~~~~~~~~----~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 284 KSVDIKGG----YGAAIGDDYASGFGFARV 309 (310)
T ss_dssp HTSCCCBS----TTCCSSSBTTTBTCBCCC
T ss_pred cccCCCCC----cccccCCccccccceeec
Confidence 98764321 112345778899999996
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=434.75 Aligned_cols=264 Identities=27% Similarity=0.359 Sum_probs=216.8
Q ss_pred cccccCCCCC--ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCC
Q 004077 132 DLLSKARYGQ--DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 209 (775)
Q Consensus 132 ~~~~~~~~G~--GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 209 (775)
.+|..+ +|+ ||+|||||||||++||+|.++ +...++|..+...
T Consensus 19 ~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------- 63 (320)
T 2z30_A 19 SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS------- 63 (320)
T ss_dssp GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB-------
T ss_pred HHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC-------
Confidence 789888 999 999999999999999999642 3333444332100
Q ss_pred CCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 210 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 210 ~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
.+.....|..||||||||||+|.. ++ ..+.||||+|+|+.+|+++.. | .+..+++++||+|
T Consensus 64 -~~~~~~~d~~gHGT~vAgiia~~~-n~---------~g~~GvAp~a~l~~~~v~~~~--g------~~~~~~i~~ai~~ 124 (320)
T 2z30_A 64 -TKLRDCADQNGHGTHVIGTIAALN-ND---------IGVVGVAPGVQIYSVRVLDAR--G------SGSYSDIAIGIEQ 124 (320)
T ss_dssp -CCHHHHBCSSSHHHHHHHHHHCCS-SS---------BSCCCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHH
T ss_pred -CCCCCCCCCCCCHHHHHHHHHccc-CC---------CceEeeCCCCEEEEEEeeCCC--C------CccHHHHHHHHHH
Confidence 001123578999999999999862 11 124699999999999999876 4 4678999999999
Q ss_pred HHhC--------------------CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCc
Q 004077 290 AIRD--------------------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW 349 (775)
Q Consensus 290 a~~~--------------------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~ 349 (775)
|+++ +++|||||||... ....+..++.++.++|++||+||||+|.....++...|+
T Consensus 125 a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~ 200 (320)
T 2z30_A 125 AILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPE 200 (320)
T ss_dssp HHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTT
T ss_pred HHhCcccccccccccccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCC
Confidence 9987 9999999999832 245677788889999999999999999876666677799
Q ss_pred eEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecC
Q 004077 350 LITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRG 429 (775)
Q Consensus 350 vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g 429 (775)
+|+|||++.
T Consensus 201 vi~Vga~~~----------------------------------------------------------------------- 209 (320)
T 2z30_A 201 VIAVGAIDS----------------------------------------------------------------------- 209 (320)
T ss_dssp EEEEEEECT-----------------------------------------------------------------------
T ss_pred eEEEEeeCC-----------------------------------------------------------------------
Confidence 999998542
Q ss_pred CcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCcc
Q 004077 430 SGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFM 509 (775)
Q Consensus 430 ~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 509 (775)
.+.+
T Consensus 210 ----------------------------------------------------------------------------~~~~ 213 (320)
T 2z30_A 210 ----------------------------------------------------------------------------NDNI 213 (320)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------CCCc
Confidence 2467
Q ss_pred ccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-------
Q 004077 510 ANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH------- 582 (775)
Q Consensus 510 a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------- 582 (775)
+.||++|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++
T Consensus 214 ~~~S~~g~----------~v~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~ 270 (320)
T 2z30_A 214 ASFSNRQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKI 270 (320)
T ss_dssp CTTSCSSC----------SEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CcccCCCC----------CEEeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccc
Confidence 89999997 789999999999876 689999999999999999999999999
Q ss_pred ------CCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCC
Q 004077 583 ------PDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 583 ------P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
|.+++.+||++|++||+++... ..+..+|+|+||+.+|++.
T Consensus 271 ~~~~~~p~lt~~~v~~~L~~ta~~~~~~-----------g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 271 LPVGTFDDISKNTVRGILHITADDLGPT-----------GWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp CCCCCTTCCSTTSHHHHHHHHSBCCSSS-----------SSBTTTBTCBCCHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHhhCccCCCC-----------CCCCCcCCceeCHHHHHHH
Confidence 9999999999999999987532 2456799999999999874
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=434.84 Aligned_cols=272 Identities=24% Similarity=0.273 Sum_probs=218.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
++|+....++||+|||||||||++||+|.+.. +.+..++..+
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~--------------------------~~~~~~~~~~------------ 53 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGAD--------------------------LTRLPSLVSG------------ 53 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTCE--------------------------EEECC-----------------
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCCc--------------------------ccCCCcccCC------------
Confidence 78998877899999999999999999997431 1222222221
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+.....|..||||||||||+|+.. +.+.||||+|+|+.+|++.+.. + .+....+++||+||+
T Consensus 54 ~~~~~~d~~gHGThVAGiiag~~~-----------~~~~GVAp~a~l~~~kv~~~~~-~------~~~~~~i~~ai~~a~ 115 (306)
T 4h6w_A 54 EANANGSMSTHGTHVASIIFGQHD-----------SPVTGIAPQCRGLIVPVFADES-L------KLSQLDLSRAIEQAV 115 (306)
T ss_dssp -----CCCCHHHHHHHHHHHCCTT-----------SSSCCSSTTSEEEECCCCCSSS-C------CCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCchHHHHHHHHcccc-----------CCcceeccccccceeecccccc-c------cchHHHHHHHHHHhh
Confidence 112334678999999999998731 2357999999999999987653 2 368888999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+++++|||+|||...........+..++..+.++|++||++|||+|......+...+++|+|||++.
T Consensus 116 ~~g~~vi~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~------------- 182 (306)
T 4h6w_A 116 NNGANIINVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD------------- 182 (306)
T ss_dssp HTTCSEEEECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT-------------
T ss_pred cccceeeeccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC-------------
Confidence 9999999999997433344556788888999999999999999999776666666789999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++|+. ..||||+|
T Consensus 183 ------------------------------------------------------~~~~~~~s~~g~~-----~~~~di~A 203 (306)
T 4h6w_A 183 ------------------------------------------------------QGKPVDFSNWGDA-----YQKQGILA 203 (306)
T ss_dssp ------------------------------------------------------TSCBCSSSCBCHH-----HHHHEEEE
T ss_pred ------------------------------------------------------CCCccccccccCC-----cCcceeec
Confidence 2367789999973 46889999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCc
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI----HPDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
||++|+++.+. +.|..++|||||||||||++|||+++ +|.++|++||++|++||+++...+
T Consensus 204 PG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~-- 268 (306)
T 4h6w_A 204 PGKDILGAKPN-------------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKD-- 268 (306)
T ss_dssp ECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTT--
T ss_pred CCcCcccccCC-------------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCC--
Confidence 99999999887 78999999999999999999999865 599999999999999999876542
Q ss_pred ccCCCCCCCCCCccceeccCccccCC
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
......||+|+||+.+|++
T Consensus 269 -------~~~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 269 -------TDDQSRCLMGKLNILDAIE 287 (306)
T ss_dssp -------CSCGGGGTTCBCCHHHHHH
T ss_pred -------CCCCCCcceeecCHHHHHH
Confidence 1244579999999999997
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=433.67 Aligned_cols=270 Identities=20% Similarity=0.119 Sum_probs=215.2
Q ss_pred cccccCCCCC--ceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCC
Q 004077 132 DLLSKARYGQ--DVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNA 209 (775)
Q Consensus 132 ~~~~~~~~G~--GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~ 209 (775)
.+|.. ++|+ ||+||||||||| +||+|.+. ++..++|..+..
T Consensus 34 ~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~~-------- 76 (347)
T 2iy9_A 34 ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDGS-------- 76 (347)
T ss_dssp HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTCC--------
T ss_pred HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCCC--------
Confidence 78988 8999 999999999999 99999642 334444443210
Q ss_pred CCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 210 TEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 210 ~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
......+.|..||||||||||+|+. | +.||||+|+|+.+|++++. + .. ++++||+|
T Consensus 77 ~~~~~~~~d~~gHGT~vAgiia~~~--------g-----~~GvAp~a~l~~~~v~~~~--~-------~~--~~~~ai~~ 132 (347)
T 2iy9_A 77 PFPVKKSEALYIHGTAMASLIASRY--------G-----IYGVYPHALISSRRVIPDG--V-------QD--SWIRAIES 132 (347)
T ss_dssp SSCCSSSHHHHHHHHHHHHHHHCSS--------S-----SCCSSTTCEEEEEECCSSB--C-------TT--HHHHHHHH
T ss_pred CCCCCCCCCCCCcHHHHHHHHhccc--------C-----CcccCCCCEEEEEEEecCC--C-------HH--HHHHHHHH
Confidence 0011245678999999999999861 2 3699999999999999764 2 22 99999999
Q ss_pred HHhC------CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-------CCCCCCCC--------
Q 004077 290 AIRD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-------SSLSNLAP-------- 348 (775)
Q Consensus 290 a~~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------~~~~~~~p-------- 348 (775)
|+++ +++|||||||... .......+..++..+.++|++||+||||+|... ..++...+
T Consensus 133 a~~~~~~~~~~~~Vin~S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~ 211 (347)
T 2iy9_A 133 IMSNVFLAPGEEKIINISGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKK 211 (347)
T ss_dssp HHTCTTSCTTEEEEEEESSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHH
T ss_pred HHhhhhcccCCceEEEeccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccc
Confidence 9999 9999999999832 234567788888999999999999999999753 33444457
Q ss_pred --ceEEeccccc--ccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEE
Q 004077 349 --WLITVGAGSL--DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIV 424 (775)
Q Consensus 349 --~vitVgAs~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 424 (775)
++|+|||++. +....
T Consensus 212 ~~~vi~Vga~~~~~~g~~~------------------------------------------------------------- 230 (347)
T 2iy9_A 212 QDPVIRVAALAQYRKGETP------------------------------------------------------------- 230 (347)
T ss_dssp TCCEEEEEEECCCCTTSCC-------------------------------------------------------------
T ss_pred cCCEEEEEEcccCCCCcee-------------------------------------------------------------
Confidence 9999998654 11000
Q ss_pred EEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecC
Q 004077 425 LCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQ 504 (775)
Q Consensus 425 l~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 504 (775)
.
T Consensus 231 -------------------------------------------------------------------------------~ 231 (347)
T 2iy9_A 231 -------------------------------------------------------------------------------V 231 (347)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCC
Q 004077 505 PAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPD 584 (775)
Q Consensus 505 ~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ 584 (775)
..+.++.||++||+ ||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+
T Consensus 232 ~~~~~~~fS~~G~~-------~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~ 291 (347)
T 2iy9_A 232 LHGGGITGSRFGNN-------WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPR 291 (347)
T ss_dssp BCCCSSSCBCBCTT-------TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred ccCCCCCCCCCCCC-------CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCC
Confidence 01355799999994 67999999999999986 68999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCC
Q 004077 585 WSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 635 (775)
Q Consensus 585 ~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 635 (775)
+++++||++|++||++.... ....+|+|+||+.+|++..
T Consensus 292 lt~~~v~~~L~~tA~~~~~~------------~~~~~G~G~ld~~~A~~~~ 330 (347)
T 2iy9_A 292 ATATELKRTLLESADKYPSL------------VDKVTEGRVLNAEKAISMF 330 (347)
T ss_dssp SCHHHHHHHHHHHSEECGGG------------TTTSGGGEECCHHHHHHHH
T ss_pred CCHHHHHHHHHHhCccCCCC------------CCccccCCEecHHHHHHHH
Confidence 99999999999999987643 2368999999999999843
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=439.55 Aligned_cols=294 Identities=27% Similarity=0.297 Sum_probs=223.5
Q ss_pred cccc-cCCCCCceEEEEeecCCCC------CCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeeccccccccc
Q 004077 132 DLLS-KARYGQDVIVGLVDNGVWP------ESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLY 204 (775)
Q Consensus 132 ~~~~-~~~~G~GV~VgVIDtGid~------~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~ 204 (775)
.+|. .+++|+||+|||||||||+ .||+|.+ +++..++|.+.
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~---------------------------~i~~~~~~~~~----- 59 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG---------------------------KITALYALGRT----- 59 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT---------------------------CEEEEEETTTT-----
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC---------------------------CEeeeccccCC-----
Confidence 7897 6999999999999999999 7999863 23334444321
Q ss_pred CCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHH
Q 004077 205 GPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADML 284 (775)
Q Consensus 205 ~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~ 284 (775)
..+.|..||||||||||+|+. . .+.||||+|+|+.+|+++..... ....+++.
T Consensus 60 ---------~~~~d~~gHGT~VAgiiag~g---------~---~~~GvAp~a~l~~~~v~~~~g~~------~~~~~~~~ 112 (434)
T 1wmd_A 60 ---------NNANDTNGHGTHVAGSVLGNG---------S---TNKGMAPQANLVFQSIMDSGGGL------GGLPSNLQ 112 (434)
T ss_dssp ---------TCCCCSSSHHHHHHHHHHCCS---------S---SSCCSSTTSEEEEEECCCTTSSC------TTSCSSHH
T ss_pred ---------CCCCCCCCcHHHHHHHHHcCC---------C---CceeeCCCCEEEEEEeecCCCcc------ccccHHHH
Confidence 246688999999999999862 1 14699999999999999765211 12456899
Q ss_pred HHHHHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHH-HcCCcEEEEecCCCCCCCCCC--CCCCCceEEecccccccc
Q 004077 285 AAIDDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNA-VKHNILVACSAGNSGPAPSSL--SNLAPWLITVGAGSLDRD 361 (775)
Q Consensus 285 ~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgAs~~~~~ 361 (775)
++|++|+++|++|||||||..... ..++...+++++ .++|++||+||||+|....+. +...+++|+|||++..+.
T Consensus 113 ~ai~~a~~~g~~Vin~S~G~~~~~--~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~ 190 (434)
T 1wmd_A 113 TLFSQAYSAGARIHTNSWGAAVNG--AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRP 190 (434)
T ss_dssp HHHHHHHHTTCSEEEECCCBCCTT--CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCG
T ss_pred HHHHHHHhcCCeEEEecCCCCcCC--cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCc
Confidence 999999999999999999984311 224555666665 589999999999999765443 345699999999764321
Q ss_pred cccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhh
Q 004077 362 FVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVK 441 (775)
Q Consensus 362 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~ 441 (775)
...
T Consensus 191 ~~~----------------------------------------------------------------------------- 193 (434)
T 1wmd_A 191 SFG----------------------------------------------------------------------------- 193 (434)
T ss_dssp GGC-----------------------------------------------------------------------------
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred hcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCC
Q 004077 442 RAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALD 521 (775)
Q Consensus 442 ~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~ 521 (775)
. .....+.++.||+|||+.
T Consensus 194 ---~--------------------------------------------------------~~~~~~~~a~fS~~G~~~-- 212 (434)
T 1wmd_A 194 ---S--------------------------------------------------------YADNINHVAQFSSRGPTK-- 212 (434)
T ss_dssp ---G--------------------------------------------------------GGSCTTSBCTTSCCCCCT--
T ss_pred ---c--------------------------------------------------------ccCCCCccccccCCCCCC--
Confidence 0 001145889999999997
Q ss_pred CCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCC-----CHHHHHHHHHh
Q 004077 522 PYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW-----SSAAIRSALMT 596 (775)
Q Consensus 522 d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~-----s~~~ik~~L~~ 596 (775)
++++||||+|||++|+++++........ .....+.|..++|||||||||||++|||+|++|++ ++++||++|++
T Consensus 213 ~g~~kpdi~ApG~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~ 291 (434)
T 1wmd_A 213 DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIA 291 (434)
T ss_dssp TSCCCCCEEEECSSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred CCCCCceEEcCCCCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHc
Confidence 6999999999999999998642210000 00113689999999999999999999999998865 89999999999
Q ss_pred cccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCe
Q 004077 597 TAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGL 636 (775)
Q Consensus 597 TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 636 (775)
||+++.. ..+++.+|+|++|+.+|++..+
T Consensus 292 tA~~~~~-----------~~~~~~~G~G~vd~~~a~~~~~ 320 (434)
T 1wmd_A 292 GAADIGL-----------GYPNGNQGWGRVTLDKSLNVAY 320 (434)
T ss_dssp HCBCCSS-----------CSSCTTTTTCBCCHHHHHTCEE
T ss_pred CCcccCC-----------CCCCccCCcCeEeHHHhcccce
Confidence 9987532 2367889999999999997653
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-49 Score=427.27 Aligned_cols=298 Identities=21% Similarity=0.277 Sum_probs=217.8
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccce---eeeeeecccccccccCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKK---IIGARYYLKGFEQLYGPLN 208 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~k---iig~~~~~~~~~~~~~~~~ 208 (775)
.+|..+++|+||+||||||||+ +||+|.+.- +.+.............+.+ ......+.+.+... +
T Consensus 23 ~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~--- 90 (340)
T 3lpc_A 23 KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-------LPGYDFISNSQISLDGDGRDADPFDEGDWFDNWACG-G--- 90 (340)
T ss_dssp HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-------CCCEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS-C---
T ss_pred HHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-------ccCccccCCccccccCCCccCCcccccccccccccc-C---
Confidence 8999999999999999999998 999997531 1111110000000000000 00000000000000 0
Q ss_pred CCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHH
Q 004077 209 ATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAID 288 (775)
Q Consensus 209 ~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~ 288 (775)
.+.+.....|..||||||||||+|...+. ..+.||||+|+|+.+|++... + +..++++++|+
T Consensus 91 ~~~~~~~~~d~~gHGT~vAgiia~~~~~~---------~g~~GvAp~a~l~~~~v~~~~--~-------~~~~~~~~ai~ 152 (340)
T 3lpc_A 91 RPDPRKERSDSSWHGSHVAGTIAAVTNNR---------IGVAGVAYGAKVVPVRALGRC--G-------GYDSDISDGLY 152 (340)
T ss_dssp TTCGGGSCBCCCCHHHHHHHHHHCCCSSS---------SSCCCTTTTSEEEEEECCBTT--B-------CCHHHHHHHHH
T ss_pred CCCcccCCCCCCCCHHHHHHHHHccCCCC---------CcceeecCCCEEEEEEEecCC--C-------CcHHHHHHHHH
Confidence 01112245688999999999999974332 235699999999999999876 3 68899999999
Q ss_pred HHHh----------CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccc
Q 004077 289 DAIR----------DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGS 357 (775)
Q Consensus 289 ~a~~----------~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~ 357 (775)
||++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 153 ~a~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~ 229 (340)
T 3lpc_A 153 WAAGGRIAGIPENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATT 229 (340)
T ss_dssp HHHTCCCTTSCCCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEEC
T ss_pred HHhcccccccccccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCC
Confidence 9998 89999999999832 23455777788899999999999999996543 2345568999999854
Q ss_pred cccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhh
Q 004077 358 LDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKG 437 (775)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~ 437 (775)
.
T Consensus 230 ~------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 230 S------------------------------------------------------------------------------- 230 (340)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 2
Q ss_pred hHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCC
Q 004077 438 MEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGP 517 (775)
Q Consensus 438 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP 517 (775)
.+.++.||++||
T Consensus 231 --------------------------------------------------------------------~~~~~~~S~~g~ 242 (340)
T 3lpc_A 231 --------------------------------------------------------------------RGIRASFSNYGV 242 (340)
T ss_dssp --------------------------------------------------------------------TSSBCTTCCBST
T ss_pred --------------------------------------------------------------------CCCcCCCCCCCC
Confidence 247789999998
Q ss_pred CCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHh-C---CCCCHHHHHHH
Q 004077 518 NALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAI-H---PDWSSAAIRSA 593 (775)
Q Consensus 518 ~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~~s~~~ik~~ 593 (775)
. |||+|||++|+++++..... .....|..++|||||||||||++|||+|+ + |.+++++||++
T Consensus 243 ~--------~di~ApG~~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~ 308 (340)
T 3lpc_A 243 D--------VDLAAPGQDILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDV 308 (340)
T ss_dssp T--------CCEEEECSSEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred C--------ceEEecCCCeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHH
Confidence 4 59999999999998763211 11246999999999999999999999998 5 99999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCC
Q 004077 594 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPG 635 (775)
Q Consensus 594 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 635 (775)
|++||++.... ++..+|+|+||+.+||+..
T Consensus 309 L~~tA~~~~~~------------~~~~~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 309 LVSTTSPFNGR------------LDRALGSGIVDAEAAVNSV 338 (340)
T ss_dssp HHHTCBCCSSC------------CSSCCCSSBCCHHHHHHHH
T ss_pred HHhcCCcCCCC------------CCCCcccceecHHHHHHHH
Confidence 99999987532 4668999999999998753
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-48 Score=465.17 Aligned_cols=355 Identities=22% Similarity=0.189 Sum_probs=242.5
Q ss_pred CCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh----
Q 004077 217 RDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR---- 292 (775)
Q Consensus 217 ~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~---- 292 (775)
.|+.||||||||||||.. + ...+.||||+|+|+.+|+++..... ......++.+|.+|++
T Consensus 267 ~D~~GHGThVAGIIAa~~-N---------~~g~~GVAP~AkI~~vKVld~~~g~------~~t~s~l~~AI~~Aid~a~~ 330 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-S---------SRDVDGVAPNAKIVSMTIGDGRLGS------METGTALVRAMTKVMELCRD 330 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-S---------SSSSCCSCTTCEEEEEECBCTTTSS------CBCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhcCC-C---------CCCceeecCCCEEEEEEeccCCCCc------ccChHHHHHHHHHHHHHHhh
Confidence 478999999999999984 2 2235799999999999998765211 2356778888888887
Q ss_pred -CCceEEEEccCCCCCCCCCccHHHHHHHHHH-cCCcEEEEecCCCCCCCCCCC--C--CCCceEEecccccccccccce
Q 004077 293 -DGVHVLSISIGTNQPFAFNRDGIAIGALNAV-KHNILVACSAGNSGPAPSSLS--N--LAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 293 -~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~~~--~--~~p~vitVgAs~~~~~~~~~~ 366 (775)
.|++|||||||... .....+.+..++.++. ++|++||+||||+|+...+.. . ..+++|+|||++.+.......
T Consensus 331 ~~gadVINmS~G~~~-~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~y 409 (1354)
T 3lxu_X 331 GRRIDVINMSYGEHA-NWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEY 409 (1354)
T ss_dssp TCCCCEEEECCCCCC-SCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC--
T ss_pred cCCceEEEcCCccCC-CCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccc
Confidence 79999999999943 2233456777778875 899999999999998655443 3 269999999976433211100
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
..
T Consensus 410 s~------------------------------------------------------------------------------ 411 (1354)
T 3lxu_X 410 AM------------------------------------------------------------------------------ 411 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
.....+.++.||||||+. ++++|
T Consensus 412 -------------------------------------------------------~~~~~g~~asFSS~GPt~--dg~~K 434 (1354)
T 3lxu_X 412 -------------------------------------------------------REKLPGNVYTWTSRDPCI--DGGQG 434 (1354)
T ss_dssp -------------------------------------------------------------CCCCCCCCSCCS--SSSCC
T ss_pred -------------------------------------------------------ccCCCCccccccCCCCCc--cCCCc
Confidence 001135889999999997 69999
Q ss_pred CceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHH----hCCCCCHHHHHHHHHhcccccC
Q 004077 527 PDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA----IHPDWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~s~~~ik~~L~~TA~~~~ 602 (775)
|||+|||++|+++..... +.|..++|||||||||||++|||++ .+|.+++++||++|++||++..
T Consensus 435 pDIaAPG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~ 503 (1354)
T 3lxu_X 435 VTVCAPGGAIASVPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG 503 (1354)
T ss_dssp EEEEEEC--------------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCT
T ss_pred ceEEecCceEEEeecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCC
Confidence 999999999999865321 5789999999999999999999986 7999999999999999999875
Q ss_pred CCCCcccCCCCCCCCCCccceeccCccccCCCCeeeecchhhHHHhhhcCCCCCCCCcccCCCCCCCCCCCCCCeeEeec
Q 004077 603 NKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLYLCSHGFSFTNPVFRCPNKPPSALNLNYPSIAIPN 682 (775)
Q Consensus 603 ~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~ 682 (775)
.. +++.||+|+||+.+|++..+.|+....+++.|+|..+..+.. .|.+.+
T Consensus 504 ~~------------~~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~r------------------gIylR~ 553 (1354)
T 3lxu_X 504 YV------------DPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADK------------------GIHLRQ 553 (1354)
T ss_dssp TS------------CTTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBS------------------SEEECS
T ss_pred CC------------CcccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCC------------------ceEEec
Confidence 42 567899999999999999999999999999999988753220 111111
Q ss_pred --CCceEEEEEEEEec----CC----CCe--EEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCC
Q 004077 683 --LNGTVIVKRTVTNV----GG----SKS--VYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTK 750 (775)
Q Consensus 683 --~~~~~t~~~tv~n~----~~----~~~--ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 750 (775)
.....+++++|+-+ .. ... .-++.+.... --|. -|..+.+ .++.++|.|.++.. ....
T Consensus 554 ~~~~~~~~~tv~V~p~f~~~~~~~~~~~i~f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~-----~L~~- 623 (1354)
T 3lxu_X 554 GVQRNSIDYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPT-----GLQP- 623 (1354)
T ss_dssp SCCCSCEEEEEEEEEEESSCSCSSSTTCSCCCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGG-----GCCS-
T ss_pred cccCCceEEEEEEeeeecCcccCChhhccceEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCC-----CCCC-
Confidence 12233444444221 11 111 1122222111 1232 3777766 36678899998873 3333
Q ss_pred ceEEEEEEEEC-----CccEEEeEEEEEe
Q 004077 751 QYVFGWYRWTD-----GLHLVRSPMAVSF 774 (775)
Q Consensus 751 ~~~~g~~~~~~-----~~~~v~~P~~~~~ 774 (775)
..+++.|..-| -++..|+|+.|..
T Consensus 624 G~h~~~v~~~D~~~~~~gp~f~ipvTv~~ 652 (1354)
T 3lxu_X 624 GVHSAVIRAYDTDCVQKGSLFEIPVTVVQ 652 (1354)
T ss_dssp EEEEEEEEEEESSCTTSCCSEEEEEEEEE
T ss_pred cceeEEEEEEEcCCcccCceEEeeEEEEe
Confidence 46689988665 2689999998753
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=403.54 Aligned_cols=236 Identities=24% Similarity=0.346 Sum_probs=200.5
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+. ++..++|.++
T Consensus 20 ~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~------------ 60 (284)
T 1sh7_A 20 RNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDN------------ 60 (284)
T ss_dssp SBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTT------------
T ss_pred hhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCC------------
Confidence 7899999999999999999999999999642 3334455432
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|+. .||||+|+|+.+|++++. | .+..+++++||+|++
T Consensus 61 -~~~~~d~~gHGT~vAgiia~~~---------------~GvAp~a~l~~~kv~~~~--g------~~~~~~~~~ai~~a~ 116 (284)
T 1sh7_A 61 -DADSSDCNGHGTHVAGTIGGSQ---------------YGVAKNVNIVGVRVLSCS--G------SGTTSGVISGVDWVA 116 (284)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHhccc---------------CCcCCCCEEEEEEeeCCC--C------CcCHHHHHHHHHHHH
Confidence 1245688999999999999862 499999999999999876 4 468899999999999
Q ss_pred h--CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEecccccccccccceEe
Q 004077 292 R--DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 292 ~--~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+ .+++|||||||.. ....+..+++++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 117 ~~~~~~~Vin~S~G~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (284)
T 1sh7_A 117 QNASGPSVANMSLGGG-----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS---------- 181 (284)
T ss_dssp HHCCSSEEEEECCCBS-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT----------
T ss_pred hCCCCCcEEEeCCCCC-----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC----------
Confidence 8 4799999999983 3467888888999999999999999996532 33455689999998542
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
.+.++.||++||.+ |
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 196 (284)
T 1sh7_A 182 ---------------------------------------------------------SDSRSSFSNWGSCV--------D 196 (284)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCcccCCCCcc--------E
Confidence 24678999999976 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCC
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 603 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~ 603 (775)
|+|||++|+++++. +.|..++|||||||||||++|||+|++|++++++||++|++||++...
T Consensus 197 i~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 197 LFAPGSQIKSAWYD-------------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp EEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EEeccCCeEEecCC-------------CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 99999999999876 689999999999999999999999999999999999999999998653
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-47 Score=402.40 Aligned_cols=229 Identities=28% Similarity=0.336 Sum_probs=194.1
Q ss_pred ccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCC
Q 004077 133 LLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATED 212 (775)
Q Consensus 133 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 212 (775)
.|. ..+|+||+|+|||||||++||+|.+. +...++|..
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 454 47999999999999999999999642 223344431
Q ss_pred CCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh
Q 004077 213 DRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292 (775)
Q Consensus 213 ~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~ 292 (775)
.+.|..||||||||||+|+ ..||||+|+|+.+|++++. + .+..+++++||+|+++
T Consensus 62 --~~~d~~gHGT~vAgiia~~---------------~~GvAp~a~i~~~~v~~~~--g------~~~~~~~~~ai~~a~~ 116 (279)
T 2pwa_A 62 --SSRDGNGHGTHCAGTVGSR---------------TYGVAKKTQLFGVKVLDDN--G------SGQYSTIIAGMDFVAS 116 (279)
T ss_dssp --CSSCSSSHHHHHHHHHHCT---------------TTCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHHH
T ss_pred --CCCCCCCCHHHHHHHHHhc---------------ccccCCCCEEEEEEeEcCC--C------CcCHHHHHHHHHHHHh
Confidence 3557899999999999986 1499999999999999876 4 4688999999999999
Q ss_pred CCc-------eEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEeccccccccccc
Q 004077 293 DGV-------HVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 293 ~gv-------dVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~ 364 (775)
+++ +|||||||.. ....+..+++++.++|++||+||||+|.... ..+...|++|+|||++.
T Consensus 117 ~~~~~~~~~~~Vin~S~G~~-----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------ 185 (279)
T 2pwa_A 117 DKNNRNCPKGVVASLSLGGG-----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------ 185 (279)
T ss_dssp HGGGSCCTTEEEEEECCCEE-----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT------
T ss_pred cCccccCCCccEEEecCCCC-----CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC------
Confidence 887 9999999982 3467888889999999999999999997543 23455689999998542
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
.+.++.||++||.+
T Consensus 186 -------------------------------------------------------------~~~~~~~S~~G~~~----- 199 (279)
T 2pwa_A 186 -------------------------------------------------------------YDRRSSFSNYGSVL----- 199 (279)
T ss_dssp -------------------------------------------------------------TSBBCTTCCBSTTC-----
T ss_pred -------------------------------------------------------------CCCcCCcCCCCCcc-----
Confidence 24778999999965
Q ss_pred CCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccC
Q 004077 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~ 602 (775)
||+|||++|+++++. +.|..++|||||||||||++|||+|+ |.+++++||++|++||++..
T Consensus 200 ---di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~ 260 (279)
T 2pwa_A 200 ---DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGD 260 (279)
T ss_dssp ---CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESC
T ss_pred ---eEEEecCCeEEeecC-------------CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCcccc
Confidence 999999999999986 68999999999999999999999999 99999999999999999764
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-47 Score=399.29 Aligned_cols=237 Identities=25% Similarity=0.346 Sum_probs=200.7
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+. +...++|..
T Consensus 22 ~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------- 61 (276)
T 4dzt_A 22 NSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------- 61 (276)
T ss_dssp SCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS-------------
T ss_pred cceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC-------------
Confidence 7899999999999999999999999999642 233333332
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
..+.|..||||||||||+|.. .||||+|+|+.+|++++. + ....++++++++|++
T Consensus 62 --~~~~d~~gHGT~vAgiiag~~---------------~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 116 (276)
T 4dzt_A 62 --GNGQDCNGHGTHVAGTIGGVT---------------YGVAKAVNLYAVRVLDCN--G------SGSTSGVIAGVDWVT 116 (276)
T ss_dssp --SCSCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred --CCCCCCCCCHHHHHHHHHccc---------------cCCCCCCEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 145678999999999999861 499999999999999876 4 478899999999999
Q ss_pred hC--CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC-CCCCCceEEecccccccccccceEe
Q 004077 292 RD--GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-SNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 292 ~~--gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+. +++|||||||.. ....+..+++++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 117 ~~~~~~~vin~S~g~~-----~~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 181 (276)
T 4dzt_A 117 RNHRRPAVANMSLGGG-----VSTALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS---------- 181 (276)
T ss_dssp HHCCSSEEEEECCCEE-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred hcCCCCeEEEECCCCC-----CCHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC----------
Confidence 87 999999999982 246788888999999999999999999654332 455689999998542
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
.+.++.||++||.. |
T Consensus 182 ---------------------------------------------------------~~~~~~~S~~g~~~--------d 196 (276)
T 4dzt_A 182 ---------------------------------------------------------SDARASFSNYGSCV--------D 196 (276)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCCc--------e
Confidence 24778999999976 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCC
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNK 604 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~ 604 (775)
|+|||++|++++.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++....
T Consensus 197 v~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 197 LFAPGASIPSAWYTSD-----------TATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp EEEECSSEEEECTTSS-----------SCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred EEeCCCCeEccccCCC-----------CceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 9999999999987632 4799999999999999999999999999999999999999999987543
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=399.32 Aligned_cols=237 Identities=26% Similarity=0.341 Sum_probs=198.8
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+. +...++|.++
T Consensus 22 ~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~------------ 62 (278)
T 2b6n_A 22 NNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN------------ 62 (278)
T ss_dssp SEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT------------
T ss_pred hhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC------------
Confidence 6899999999999999999999999999642 2334444432
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||+|+. .||||+|+|+.+|++++. + .+..++++++|+|++
T Consensus 63 -~~~~~d~~gHGT~vAgiia~~~---------------~GvAp~a~i~~~~v~~~~--g------~~~~~~~~~ai~~a~ 118 (278)
T 2b6n_A 63 -DYDATDCNGHGTHVAGTIGGST---------------YGVAKNVNVVGVRVLNCS--G------SGSNSGVIAGINWVK 118 (278)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCCCCCCCCcHHHHHHHHHCCC---------------cCCCCCCeEEEEEEECCC--C------CccHHHHHHHHHHHH
Confidence 1245688999999999999861 499999999999999876 4 468899999999999
Q ss_pred h--CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC-CCCCCCceEEecccccccccccceEe
Q 004077 292 R--DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 292 ~--~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+ .+++|||||||... ...+..++.++.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 119 ~~~~g~~Vin~S~G~~~-----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------- 183 (278)
T 2b6n_A 119 NNASGPAVANMSLGGGA-----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS---------- 183 (278)
T ss_dssp HHCCSSEEEEECCCEEC-----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------
T ss_pred hCCCCCeEEEECCCCCc-----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC----------
Confidence 7 59999999999832 4677788889999999999999999965432 3445689999998542
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
.+.++.||++||.. |
T Consensus 184 ---------------------------------------------------------~~~~~~~S~~G~~~--------d 198 (278)
T 2b6n_A 184 ---------------------------------------------------------NDSRSSFSNYGTCL--------D 198 (278)
T ss_dssp ---------------------------------------------------------TSBBCTTCCBSTTC--------C
T ss_pred ---------------------------------------------------------CCCcCCcCCCCCCC--------e
Confidence 24678999999865 9
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccC
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKN 602 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~ 602 (775)
|+|||++|++++.... +.|..++|||||||||||++|||+|++|.+++++||++|++||++..
T Consensus 199 i~ApG~~i~s~~~~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 199 IYAPGSSITSSWYTSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp EEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred EEeCCCCeECcccCCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 9999999999986521 57899999999999999999999999999999999999999998754
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=423.75 Aligned_cols=291 Identities=14% Similarity=0.081 Sum_probs=214.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+.-. ....++|.++... +.
T Consensus 29 ~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~~~-------p~ 76 (471)
T 1p8j_A 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQDPD-------PQ 76 (471)
T ss_dssp HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTBSC-------CC
T ss_pred HHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCCCC-------CC
Confidence 899999999999999999999999999974310 0112334332110 01
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+...+.|..||||||||||||...++. .+.||||+|+|+.+|+++ | ..+++++|+++++
T Consensus 77 ~~~~~~d~~gHGT~vAGiiaa~~~n~~---------g~~GvAp~a~i~~~rv~~----g--------~~~~~~~ai~~a~ 135 (471)
T 1p8j_A 77 PRYTQMNDNRHGTRCAGEVAAVANNGV---------CGVGVAYNARIGGVRMLD----G--------EVTDAVEARSLGL 135 (471)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECSS----S--------CCCHHHHHHHHTS
T ss_pred CccCCCCCCCcHHHHHHHHHeeccCCC---------CCEEECCCCeEEEEEccC----C--------chhHHHHHHHhhh
Confidence 112456889999999999999743222 246999999999999985 2 3568999999999
Q ss_pred h-CCceEEEEccCCCCCCC---CCccHHHHHHHHHHc-----CCcEEEEecCCCCCCCCC--C--CCCCCceEEeccccc
Q 004077 292 R-DGVHVLSISIGTNQPFA---FNRDGIAIGALNAVK-----HNILVACSAGNSGPAPSS--L--SNLAPWLITVGAGSL 358 (775)
Q Consensus 292 ~-~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~--~--~~~~p~vitVgAs~~ 358 (775)
+ ++++|||||||...... .....+..++.++.+ +|++||+||||+|..... . ...++++|+|||++.
T Consensus 136 ~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~ 215 (471)
T 1p8j_A 136 NPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 215 (471)
T ss_dssp CTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred ccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC
Confidence 9 99999999999843211 122334455555543 699999999999965322 1 123478999998542
Q ss_pred ccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhh
Q 004077 359 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 438 (775)
Q Consensus 359 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~ 438 (775)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCC
Q 004077 439 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 518 (775)
Q Consensus 439 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~ 518 (775)
.+.++.||++||.
T Consensus 216 -------------------------------------------------------------------~g~~a~~S~~g~~ 228 (471)
T 1p8j_A 216 -------------------------------------------------------------------FGNVPWYSEACSS 228 (471)
T ss_dssp -------------------------------------------------------------------TSCCCTTCCBCTT
T ss_pred -------------------------------------------------------------------CCCcccccCCCCc
Confidence 2467899999998
Q ss_pred CCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 004077 519 ALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598 (775)
Q Consensus 519 ~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA 598 (775)
.. ...+|...+||.+|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|++||
T Consensus 229 ~~--~~~~~~~~~~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA 294 (471)
T 1p8j_A 229 TL--ATTYSSGNQNEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTS 294 (471)
T ss_dssp CC--EEEECCCSTTSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHC
T ss_pred ce--EEeCCCCCCCCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcC
Confidence 72 445666666778999997641 4689999999999999999999999999999999999999999
Q ss_pred cccCCCCCcccCCCCCCCCCCccceeccCccccCCCCe
Q 004077 599 WMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGL 636 (775)
Q Consensus 599 ~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~l 636 (775)
++.+...............+..||+|+||+.+|++.+.
T Consensus 295 ~~~~~~~~~~~~n~~g~~~~~~~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 295 KPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQ 332 (471)
T ss_dssp BCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHHHH
T ss_pred ccCCCCCCCceecCCCcccCCCCCCEEEcHhHHHHHhh
Confidence 98864322111111112245789999999999998544
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=421.19 Aligned_cols=284 Identities=17% Similarity=0.145 Sum_probs=213.9
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.+.- + ..+.++|..+. .
T Consensus 45 ~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~------------------~~~~~d~~~~~----------~ 89 (503)
T 2id4_A 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C------------------AEGSWDFNDNT----------N 89 (503)
T ss_dssp HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C------------------GGGCEETTTTB----------S
T ss_pred HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c------------------ccCcccCCCCC----------C
Confidence 89999999999999999999999999997531 0 01233444321 0
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+.....|..||||||||||||...++. .+.||||+|+|+.+|+++.. +...++++||+|++
T Consensus 90 ~~~p~~d~~gHGT~vAGiiaa~~~n~~---------~~~GvAp~a~i~~~rv~~~~----------~~~~~~~~ai~~a~ 150 (503)
T 2id4_A 90 LPKPRLSDDYHGTRCAGEIAAKKGNNF---------CGVGVGYNAKISGIRILSGD----------ITTEDEAASLIYGL 150 (503)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECTTSC----------CCHHHHHHHTTTTT
T ss_pred CCCCCCCCCChHHHHHHHHHhccCCCC---------CcEEECCCCEEEEEEeeCCC----------CChHHHHHHHHhHh
Confidence 111235788999999999999743222 24699999999999998743 57889999999999
Q ss_pred hCCceEEEEccCCCCCCC---CCccHHHHHHHHHH-----cCCcEEEEecCCCCCCCCC--CCC--CCCceEEecccccc
Q 004077 292 RDGVHVLSISIGTNQPFA---FNRDGIAIGALNAV-----KHNILVACSAGNSGPAPSS--LSN--LAPWLITVGAGSLD 359 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~---~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~--~~~--~~p~vitVgAs~~~ 359 (775)
+++ +|||||||...... .....+..++.++. .+|++||+||||+|..... ... .++++|+|||++.
T Consensus 151 ~~~-~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~- 228 (503)
T 2id4_A 151 DVN-DIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH- 228 (503)
T ss_dssp TTC-SEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-
T ss_pred hcC-CEEEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC-
Confidence 988 99999999843211 12344666666665 4799999999999965332 121 3478999998542
Q ss_pred cccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhH
Q 004077 360 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 439 (775)
Q Consensus 360 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~ 439 (775)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 440 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 440 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
.+.++.||++||..
T Consensus 229 ------------------------------------------------------------------~~~~a~~S~~g~~~ 242 (503)
T 2id4_A 229 ------------------------------------------------------------------KDLHPPYSEGCSAV 242 (503)
T ss_dssp ------------------------------------------------------------------TSCCCTTCCCCTTE
T ss_pred ------------------------------------------------------------------CCCcCCcCCCCCcc
Confidence 24678999999987
Q ss_pred CCCCCCCCceee----CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 004077 520 LDPYILKPDITA----PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALM 595 (775)
Q Consensus 520 ~~d~~~KPDI~A----PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~ 595 (775)
|++| ||..|+++.... ..|..++|||||||||||++|||+|++|+|++++||++|+
T Consensus 243 --------~~~a~~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~ 302 (503)
T 2id4_A 243 --------MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSI 302 (503)
T ss_dssp --------EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred --------eEeecCCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHH
Confidence 8887 899999995431 5799999999999999999999999999999999999999
Q ss_pred hcccccCCC-CCcccCCCCCCCCCCccceeccCccccCCCCee
Q 004077 596 TTAWMKNNK-ALPITNADGSIATPFSFGSGHFRPTKAADPGLV 637 (775)
Q Consensus 596 ~TA~~~~~~-g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 637 (775)
+||+++... .............+..||+|+||+.+|++.+.-
T Consensus 303 ~tA~~~~~~~~~~~~~~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 303 LSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp HHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred hccccCCCCcCCCceecCCCCccCcccCCcEecHHHHHHHHhc
Confidence 999987643 111111111122456799999999999985443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=411.63 Aligned_cols=279 Identities=21% Similarity=0.209 Sum_probs=199.6
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
..|..+++|+||+|+|||||||++||+|.++- ......+..+.+ + ..
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~~d---g----~~ 63 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPEED---G----TR 63 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCCCC----------
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccCCC---C----cc
Confidence 47888999999999999999999999997531 001111110000 0 00
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
-...+.|..||||||||||+|+. .||||+|+|+.+|++++. | ....+++++||+|++
T Consensus 64 f~~~~~D~~GHGThVAGIIag~~---------------~GVAP~A~L~~vkVl~~~--G------~g~~s~ii~ai~~a~ 120 (546)
T 2qtw_B 64 FHRQASKCDSHGTHLAGVVSGRD---------------AGVAKGASMRSLRVLNCQ--G------KGTVSGTLIGLEFIR 120 (546)
T ss_dssp ----CTTTTHHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S------EEEHHHHHHHHHHHH
T ss_pred ccCCCCCCCChHHHHHHHHhccC---------------CCcCCCCEEEEEEEECCC--C------CcCHHHHHHHHHHHH
Confidence 00245688999999999999862 499999999999999876 4 467899999999999
Q ss_pred hC------CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC-CCCCCCCceEEeccccccccccc
Q 004077 292 RD------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPS-SLSNLAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 292 ~~------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgAs~~~~~~~~ 364 (775)
+. +++|||||||+. ....+..++.++.++|++||+||||+|.+.. ..+...|++|+|||++.+...
T Consensus 121 ~~~~~~~~g~~VINmSlGg~-----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~-- 193 (546)
T 2qtw_B 121 KSQLVQPVGPLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP-- 193 (546)
T ss_dssp HHHHHSCCSCEEEEECEEEE-----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB--
T ss_pred HhhhhccCCCeEEEecCCCC-----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc--
Confidence 74 999999999982 3467888889999999999999999996542 234556999999986532200
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
...-..||++||.
T Consensus 194 -------------------------------------------------------------a~~s~~fSn~G~~------ 206 (546)
T 2qtw_B 194 -------------------------------------------------------------VTLGTLGTNFGRC------ 206 (546)
T ss_dssp -------------------------------------------------------------CEETTEECCBSTT------
T ss_pred -------------------------------------------------------------ccccCCcCCCCCc------
Confidence 0001128999984
Q ss_pred CCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCC
Q 004077 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNK 604 (775)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~ 604 (775)
|||+|||++|+++++... ..|..++|||||||||||++|||+|++|++++++||++|++||.+....
T Consensus 207 --vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~ 273 (546)
T 2qtw_B 207 --VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVIN 273 (546)
T ss_dssp --CCEEEECSSEEEECTTST-----------TCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSC
T ss_pred --ceEEecCccEEeeccCCC-----------CcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccC
Confidence 499999999999987632 4789999999999999999999999999999999999999999865422
Q ss_pred CCccc------CCC---CCCCCCCccceec--cCccccCC
Q 004077 605 ALPIT------NAD---GSIATPFSFGSGH--FRPTKAAD 633 (775)
Q Consensus 605 g~~~~------~~~---~~~~~~~~~G~G~--vn~~~Al~ 633 (775)
...+. ... ........+|+|+ .++..+..
T Consensus 274 ~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 274 EAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp GGGSCHHHHTTSCCEECCCCCTTCC--CCCEEEEEECCCC
T ss_pred CccCccccCCCCccchhccCCcccccCCCcchhchhccCC
Confidence 11000 000 0112456688888 77777765
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=388.51 Aligned_cols=231 Identities=26% Similarity=0.326 Sum_probs=195.1
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
..|... +|+||+|||||||||++||+|.+. +...++|..
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------- 62 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAS------------- 62 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSS-------------
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCC-------------
Confidence 566655 999999999999999999999642 333333432
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...|..||||||||||+|+ ..||||+|+|+.+|+++.. + .+..++++++|+|++
T Consensus 63 ---~~~d~~gHGT~vAgii~~~---------------~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 116 (279)
T 3f7m_A 63 ---TARDGHGHGTHCAGTIGSK---------------TWGVAKKVSIFGVKVLDDS--G------SGSLSNIIAGMDFVA 116 (279)
T ss_dssp ---SSSCSSSHHHHHHHHHHCT---------------TTCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred ---CCCCCCCcHHHHHHHHhcC---------------ccccCCCCEEEEEEeeCCC--C------CcCHHHHHHHHHHHH
Confidence 1237899999999999986 1499999999999999876 4 478899999999999
Q ss_pred hCC-------ceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC-CCCCCceEEecccccccccc
Q 004077 292 RDG-------VHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-SNLAPWLITVGAGSLDRDFV 363 (775)
Q Consensus 292 ~~g-------vdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-~~~~p~vitVgAs~~~~~~~ 363 (775)
+++ ++|||||||.. ....+..++.++.++|++||+||||+|...... +...+++|+|||++.
T Consensus 117 ~~~~~~~~~~~~Vin~S~g~~-----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~----- 186 (279)
T 3f7m_A 117 SDRQSRNCPRRTVASMSLGGG-----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS----- 186 (279)
T ss_dssp HHGGGSCCTTEEEEEECCCEE-----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-----
T ss_pred hccccccCCCCeEEEeCCCcC-----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-----
Confidence 876 99999999982 456788888999999999999999999764332 455689999998542
Q ss_pred cceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhc
Q 004077 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRA 443 (775)
Q Consensus 364 ~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~ 443 (775)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCC
Q 004077 444 GGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPY 523 (775)
Q Consensus 444 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~ 523 (775)
.+.++.||++||..
T Consensus 187 --------------------------------------------------------------~~~~~~~S~~g~~~---- 200 (279)
T 3f7m_A 187 --------------------------------------------------------------NDVRSTFSNYGRVV---- 200 (279)
T ss_dssp --------------------------------------------------------------TSBBCTTCCBSTTC----
T ss_pred --------------------------------------------------------------CCCCCCCCCCCCCC----
Confidence 24778999999966
Q ss_pred CCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCC
Q 004077 524 ILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNN 603 (775)
Q Consensus 524 ~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~ 603 (775)
||+|||++|+++++. +.|..++|||||||+|||++|||+|++|. ++++||++|++||++...
T Consensus 201 ----di~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 201 ----DIFAPGTSITSTWIG-------------GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp ----CEEEECSSEEEECGG-------------GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred ----eEEECCCCeEeecCC-------------CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 999999999999886 68999999999999999999999999999 999999999999998643
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=406.67 Aligned_cols=296 Identities=20% Similarity=0.189 Sum_probs=199.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||||.++- ..+.++|..+. .
T Consensus 61 ~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~----------~ 104 (600)
T 3hjr_A 61 WAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGS----------D 104 (600)
T ss_dssp HHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSS----------S
T ss_pred HHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCC----------C
Confidence 79999999999999999999999999997430 11223333221 1
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHH-HHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAI-DDA 290 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai-~~a 290 (775)
+.....|+.||||||||||||.. ++ ..+.||||+|+|+.+|++++. + ....++++.|+ +++
T Consensus 105 dp~p~~~~~gHGThVAGiIAa~~-n~---------~g~~GVAp~A~l~~~rvl~~~--~------~~~~~~~~~a~~~~~ 166 (600)
T 3hjr_A 105 DPTPTDPDTAHGTSVSGIIAAVD-NA---------IGTKGIAPRAQLQGFNLLDDN--S------QQLQKDWLYALGDSN 166 (600)
T ss_dssp CCCCCSTTCCHHHHHHHHHHCCS-SS---------SSCCCSSTTCEEEEECTTSTT--C------CCCHHHHHHHTTSSH
T ss_pred CCCCCCCCCChHHHHHHHHhEeC-CC---------CCcEEeCCCCEEEEEEeecCC--C------CccHHHHHHHhhhhh
Confidence 11233457899999999999852 11 124699999999999999876 3 35677777776 667
Q ss_pred HhCCceEEEEccCCCCCCCCCccH-----HHHHHHH--HHcCCcEEEEecCCCCCCCCCCC-------------------
Q 004077 291 IRDGVHVLSISIGTNQPFAFNRDG-----IAIGALN--AVKHNILVACSAGNSGPAPSSLS------------------- 344 (775)
Q Consensus 291 ~~~gvdVIn~SlG~~~~~~~~~~~-----~~~a~~~--a~~~Gi~vV~AAGN~G~~~~~~~------------------- 344 (775)
..++++|||||||.........+. +..++.. ...+|+++|+||||.+.......
T Consensus 167 ~~~~~~I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~ 246 (600)
T 3hjr_A 167 ASRDNRVFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNL 246 (600)
T ss_dssp HHHTCSEEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTS
T ss_pred hhcCCCEEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccc
Confidence 888999999999974322222222 1222222 23679999999999763211000
Q ss_pred ---CCCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceec
Q 004077 345 ---NLAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKG 421 (775)
Q Consensus 345 ---~~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 421 (775)
...+++|+|||+
T Consensus 247 d~~~~~~~~IsVgA~----------------------------------------------------------------- 261 (600)
T 3hjr_A 247 DPSNSNFWNLVVSAL----------------------------------------------------------------- 261 (600)
T ss_dssp SGGGGSSSEEEEEEE-----------------------------------------------------------------
T ss_pred cCccccCcceEEeee-----------------------------------------------------------------
Confidence 001122222221
Q ss_pred eEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEe
Q 004077 422 KIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVL 501 (775)
Q Consensus 422 kivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 501 (775)
T Consensus 262 -------------------------------------------------------------------------------- 261 (600)
T 3hjr_A 262 -------------------------------------------------------------------------------- 261 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCccccccCCCCCCCCCCCCCCceeeCCCcE--------EEcccCCCCCC-------------cccCCccccccEE
Q 004077 502 HTQPAPFMANFTSRGPNALDPYILKPDITAPGLNI--------LAAWSEASSPS-------------KLAFDKRIVKYTI 560 (775)
Q Consensus 502 ~~~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I--------~sa~~~~~~~~-------------~~~~~~~~~~y~~ 560 (775)
...+.++.||++|+.. +++|||..+ .+..++..... ..........|..
T Consensus 262 --~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (600)
T 3hjr_A 262 --NADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGV 331 (600)
T ss_dssp --CTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEE
T ss_pred --cCCCCEeecccCCcce--------eeccCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceec
Confidence 2246888999999987 899999762 22222211000 0011122356889
Q ss_pred eeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccC--------------------CCCCCCCCCc
Q 004077 561 FSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITN--------------------ADGSIATPFS 620 (775)
Q Consensus 561 ~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~--------------------~~~~~~~~~~ 620 (775)
++|||||||||||++|||+|++|+|++++||++|++||++++....|+.. ..........
T Consensus 332 ~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~ 411 (600)
T 3hjr_A 332 MNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPT 411 (600)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTT
T ss_pred cccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccc
Confidence 99999999999999999999999999999999999999999866544220 0111223567
Q ss_pred cceeccCccccCCCCe
Q 004077 621 FGSGHFRPTKAADPGL 636 (775)
Q Consensus 621 ~G~G~vn~~~Al~~~l 636 (775)
||||+||+.+|++.+.
T Consensus 412 yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 412 YGFGLIDVNKALELAA 427 (600)
T ss_dssp TBTCBCCHHHHHHHHT
T ss_pred cCCceecHHHHHHHhh
Confidence 9999999999987543
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-25 Score=250.70 Aligned_cols=97 Identities=27% Similarity=0.409 Sum_probs=75.1
Q ss_pred ceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh---CCceEEEEccCCCCCCCC---CccHHHHHHHH
Q 004077 248 TASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR---DGVHVLSISIGTNQPFAF---NRDGIAIGALN 321 (775)
Q Consensus 248 ~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~---~gvdVIn~SlG~~~~~~~---~~~~~~~a~~~ 321 (775)
.+.||||+|+|+.|++. ...++++++|+||++ ++++|||||||.... .+ ....+..++.+
T Consensus 273 ~~~gvAp~a~i~~~~~~-------------~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~-~~~~~~~~~~~~~~~~ 338 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP-------------NTDAGFLNAITTAVHDPTHKPSIVSISWGGPED-SWAPASIAAMNRAFLD 338 (552)
T ss_dssp HHHHHCTTSEEEEEECC-------------SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEGG-GSCHHHHHHHHHHHHH
T ss_pred hhhccCCCCeEEEEEcC-------------CCCchHHHHHHHHHhcccCCCCEEEecccCCcc-cCCHHHHHHHHHHHHH
Confidence 35799999999999972 245689999999998 799999999998321 11 12356667778
Q ss_pred HHcCCcEEEEecCCCCCCCC--------CCCCCCCceEEeccccc
Q 004077 322 AVKHNILVACSAGNSGPAPS--------SLSNLAPWLITVGAGSL 358 (775)
Q Consensus 322 a~~~Gi~vV~AAGN~G~~~~--------~~~~~~p~vitVgAs~~ 358 (775)
|..+||+||+||||+|.... ..+...|+|++||+++.
T Consensus 339 a~~~Gi~vv~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~ 383 (552)
T 1t1e_A 339 AAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRL 383 (552)
T ss_dssp HHHTTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEE
T ss_pred HHhCCeEEEEecCCCCCCCCCCCCcccccCcccCCCEEEEecccc
Confidence 88999999999999996532 22345699999999864
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-21 Score=210.88 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=77.4
Q ss_pred eecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-CCceEEEEccCCCCCC---CCCccHHHHHHHHHHcCC
Q 004077 251 GGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR-DGVHVLSISIGTNQPF---AFNRDGIAIGALNAVKHN 326 (775)
Q Consensus 251 GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~-~gvdVIn~SlG~~~~~---~~~~~~~~~a~~~a~~~G 326 (775)
.+||+++++.|++.+.. + +..++++.+|+||++ ++++|||||||..... ....+.+..++.+|..+|
T Consensus 91 ~~aP~a~~~~~~~~~~~--~-------~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~G 161 (372)
T 1ga6_A 91 SAGGAVQQLLFYMADQS--A-------SGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG 161 (372)
T ss_dssp HTTSCEEEEEEEEECTT--S-------STTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred hcCCCCcEEEEEeCCCC--C-------cccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCC
Confidence 57899999999998654 2 677899999999998 8999999999983210 112345667777888999
Q ss_pred cEEEEecCCCCCCCC-------------CCCCCCCceEEecccccc
Q 004077 327 ILVACSAGNSGPAPS-------------SLSNLAPWLITVGAGSLD 359 (775)
Q Consensus 327 i~vV~AAGN~G~~~~-------------~~~~~~p~vitVgAs~~~ 359 (775)
|+||+||||+|...+ ..+...|+|++||+++..
T Consensus 162 itvv~AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 162 QTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred cEEEEEECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999999999996532 122356999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.8e-09 Score=119.75 Aligned_cols=77 Identities=18% Similarity=0.247 Sum_probs=51.5
Q ss_pred HHHHHHHHHH--hCCceEEEEccCCCCCC--CCCccHHHHHHHHHHcCCcEEEEecCCCCCCCC----------CCCCCC
Q 004077 282 DMLAAIDDAI--RDGVHVLSISIGTNQPF--AFNRDGIAIGALNAVKHNILVACSAGNSGPAPS----------SLSNLA 347 (775)
Q Consensus 282 ~i~~ai~~a~--~~gvdVIn~SlG~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----------~~~~~~ 347 (775)
.++..+++.. .+-++|||||||..... ..+...+...+.++..+||.|++|+||+|.... ..+...
T Consensus 284 ~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ASGD~G~~~~~~~~~~~~~~~~Pas~ 363 (544)
T 3edy_A 284 PFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGDSGAGCWSVSGRHQFRPTFPASS 363 (544)
T ss_dssp HHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEECCSSTTBCEEETTEEECCCEETTTC
T ss_pred cHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEecCCCCccccCCCCCccccCCCcCCC
Confidence 3444444433 35689999999984211 111234455566788899999999999996432 233456
Q ss_pred CceEEeccccc
Q 004077 348 PWLITVGAGSL 358 (775)
Q Consensus 348 p~vitVgAs~~ 358 (775)
|||++||+++.
T Consensus 364 P~VtaVGgT~l 374 (544)
T 3edy_A 364 PYVTTVGGTSF 374 (544)
T ss_dssp TTSEEEEEEEE
T ss_pred CcEEEEeeeec
Confidence 99999999764
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=96.51 Aligned_cols=95 Identities=21% Similarity=0.136 Sum_probs=76.8
Q ss_pred CCCCcCCCCCCCCc-------eeceEEEEecCC-cchhhhhhHhhhcCceEEEEecCCCCCCccc----cCCccccEEEE
Q 004077 405 ETNQCLPGSLTPEK-------VKGKIVLCMRGS-GFKLSKGMEVKRAGGVGLILGNSPANGNEYS----YDAHYLPATAV 472 (775)
Q Consensus 405 ~~~~c~~~~~~~~~-------~~gkivl~~~g~-~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i 472 (775)
....|.+..+.... .++||+|++||. |+|.+|.++++++||.++|+||+...+.... .....||+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 45789887653322 578999999999 9999999999999999999999853322221 22357999999
Q ss_pred eHHHHHHHHHHHhcCCCceEEEEeceE
Q 004077 473 LYDDAIKIHEYIKSTNNPTAIIKQART 499 (775)
Q Consensus 473 ~~~~g~~l~~~~~~~~~~~~~i~~~~~ 499 (775)
+..+|+.|++++..+..++++|.....
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti~vg~~ 188 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVIEVGKK 188 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEEECCCc
Confidence 999999999999999998888887653
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-08 Score=90.97 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecC
Q 004077 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSH 99 (775)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~ 99 (775)
..+.|||+|++... ......|++|+.+++.+ .....+++|+|++.|+||+++|+++++++|++ +|.+|+||+
T Consensus 36 ip~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~ 109 (114)
T 2w2n_P 36 LPGTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 109 (114)
T ss_dssp EEEEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred CCCcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCc
Confidence 45799999998772 23455888999987754 22345899999999999999999999999999 999999999
Q ss_pred CCcccc
Q 004077 100 PEKYSL 105 (775)
Q Consensus 100 ~~~~~~ 105 (775)
.++.
T Consensus 110 --~v~~ 113 (114)
T 2w2n_P 110 --SVFA 113 (114)
T ss_dssp --EEEE
T ss_pred --eEec
Confidence 6653
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-07 Score=77.85 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=54.4
Q ss_pred cCCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEec
Q 004077 21 KQKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPS 98 (775)
Q Consensus 21 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~ 98 (775)
...+.|||.||++... .. .+..+++. ...++.++|++ |+||+++++++++++|++ +|.+||||
T Consensus 6 ~i~~~YIV~~k~~~~~----~~---~~~~~~~~-------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D 70 (80)
T 3cnq_P 6 NGEKKYIVGFKQGFKS----CA---KKEDVISE-------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEED 70 (80)
T ss_dssp --CCEEEEEECTTCCS----HH---HHHHHHHT-------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEEC
T ss_pred cCCCCEEEEECCCCCh----HH---HHHHHHHH-------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeC
Confidence 3468999999988732 11 12233322 12479999998 999999999999999999 99999999
Q ss_pred CCCcccccccC
Q 004077 99 HPEKYSLQTTR 109 (775)
Q Consensus 99 ~~~~~~~~~~~ 109 (775)
+ .++++++.
T Consensus 71 ~--~v~~~tt~ 79 (80)
T 3cnq_P 71 K--LYRALSAT 79 (80)
T ss_dssp C--EEEECCC-
T ss_pred c--EEEEeeec
Confidence 9 88887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-07 Score=81.74 Aligned_cols=76 Identities=12% Similarity=0.050 Sum_probs=57.4
Q ss_pred CCceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecC
Q 004077 22 QKQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSH 99 (775)
Q Consensus 22 ~~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~ 99 (775)
..+.|||+||++.. ......|.+++..+..+.. ...++.|+|++.|+||++++++++++.|++ +|.+|++++
T Consensus 46 Ip~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r~-~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~ 119 (124)
T 2qtw_A 46 LPGTYVVVLKEETH-----LSQSERTARRLQAQAARRG-YLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDS 119 (124)
T ss_dssp EEEEEEEEECTTCC-----HHHHHHHHHHHHHHHHHTT-CCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEE
T ss_pred CCCCEEEEECCCCC-----HHHHHHHHHHHHHHHhhcc-cCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCc
Confidence 35799999998873 2334455566655432211 234799999999999999999999999999 999999998
Q ss_pred CCcccc
Q 004077 100 PEKYSL 105 (775)
Q Consensus 100 ~~~~~~ 105 (775)
.++.
T Consensus 120 --~v~a 123 (124)
T 2qtw_A 120 --SVFA 123 (124)
T ss_dssp --EEEE
T ss_pred --eEec
Confidence 6653
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=70.07 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=54.1
Q ss_pred ceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeec-eeEeEEEEEcCHHHHHhhcc----ccceEEec
Q 004077 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK-HSINGFSAVLTPDEAARLSE----EVVSVYPS 98 (775)
Q Consensus 24 ~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~~~~l~~~~~~~L~~----~V~~V~~~ 98 (775)
+.|||.||++.. ......|.+++...- .++.+.|+ .+|+||+++++++++++|++ .|.+||+|
T Consensus 3 ~sYIV~lk~~~~-----~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDVS-----EDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCCC-----HHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 689999998872 344556777776653 36889994 78999999999999999998 39999999
Q ss_pred CCCccc
Q 004077 99 HPEKYS 104 (775)
Q Consensus 99 ~~~~~~ 104 (775)
+ .++
T Consensus 71 ~--~v~ 74 (76)
T 1v5i_B 71 H--VAH 74 (76)
T ss_dssp C--EEE
T ss_pred c--EEe
Confidence 9 654
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0042 Score=68.54 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=59.8
Q ss_pred CCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCc--cc-cCCccccEEEEeHHHHHHHHHHHh
Q 004077 413 SLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNE--YS-YDAHYLPATAVLYDDAIKIHEYIK 485 (775)
Q Consensus 413 ~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~--~~-~~~~~~p~~~i~~~~g~~l~~~~~ 485 (775)
++...+++|||||++||.|.|..|..+++++||.|+|++++...... .. .....+|...++.+++..|.+++.
T Consensus 107 D~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 107 DVAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred hcCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 44455899999999999999999999999999999999998532211 11 135678999999999999999984
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0056 Score=48.35 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=35.9
Q ss_pred hcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecCCCccc
Q 004077 62 RASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSHPEKYS 104 (775)
Q Consensus 62 ~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~~~~~~ 104 (775)
..++.++|.. +++++++||.+.++.|++ +|.+|++|. ..+
T Consensus 22 gG~i~~~~~~-I~a~~~~lp~~~~~~L~~~p~V~yVE~D~--~v~ 63 (65)
T 2z30_B 22 GGHIVYQFKL-IPAVVVDVPANAVGKLKKMPGVEKVEFDH--QAV 63 (65)
T ss_dssp TCEEEEECSS-SSEEEEEECGGGHHHHHTSTTEEEEEECC--EEE
T ss_pred CCEEEEEecC-CcEEEEEeCHHHHHHHhcCCCceEEecCc--EEE
Confidence 4689999977 999999999999999999 999999998 543
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.024 Score=62.81 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCceeceEEEEecCCcc---------hhhh----hhHhhhcCceEEEEecCCCCCC-------c-cccCCccccEEEEeH
Q 004077 416 PEKVKGKIVLCMRGSGF---------KLSK----GMEVKRAGGVGLILGNSPANGN-------E-YSYDAHYLPATAVLY 474 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~---------~~~k----~~~~~~~Ga~g~i~~n~~~~~~-------~-~~~~~~~~p~~~i~~ 474 (775)
+.+++|||||++|+.|. +..| ..++.++||+|+|++|+..... . .......+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 56899999999998874 4444 3579999999999999743221 1 111245799999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEec
Q 004077 475 DDAIKIHEYIKSTNNPTAIIKQA 497 (775)
Q Consensus 475 ~~g~~l~~~~~~~~~~~~~i~~~ 497 (775)
++++.|...+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998877666666544
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.015 Score=67.23 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=55.3
Q ss_pred CceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCC------------------ccc----------------c
Q 004077 417 EKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGN------------------EYS----------------Y 462 (775)
Q Consensus 417 ~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~------------------~~~----------------~ 462 (775)
.+++|||||+++|.|.+..|..+++++||.|+|+|++..... ... .
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 579999999999999999999999999999999999754210 000 0
Q ss_pred CCccccEEEEeHHHHHHHHHHHh
Q 004077 463 DAHYLPATAVLYDDAIKIHEYIK 485 (775)
Q Consensus 463 ~~~~~p~~~i~~~~g~~l~~~~~ 485 (775)
....||+..|+.+++..|.+.+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 12368999999999999987543
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=95.47 E-value=0.016 Score=67.69 Aligned_cols=71 Identities=27% Similarity=0.404 Sum_probs=56.4
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCC----C---------------------------Ccccc--
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPAN----G---------------------------NEYSY-- 462 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~----~---------------------------~~~~~-- 462 (775)
..+++|||||+++|.|.+.+|..+|+++||.|+|+|++..+ + ..+.+
T Consensus 150 ~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ 229 (707)
T 3fed_A 150 GINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGY 229 (707)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTS
T ss_pred CCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCCCccCCCccccccceecccCCCCCCCCCC
Confidence 45799999999999999999999999999999999986210 0 00000
Q ss_pred ---------------CCccccEEEEeHHHHHHHHHHHhc
Q 004077 463 ---------------DAHYLPATAVLYDDAIKIHEYIKS 486 (775)
Q Consensus 463 ---------------~~~~~p~~~i~~~~g~~l~~~~~~ 486 (775)
....||++.|+..++..|+..+..
T Consensus 230 ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 230 PAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp CCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 124789999999999999987653
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.3 Score=43.51 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=43.4
Q ss_pred CceEEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEEC
Q 004077 684 NGTVIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLG 740 (775)
Q Consensus 684 ~~~~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~ 740 (775)
..+.+.+++|+|.|..+..|++.... -++++|..-.+ ++|++..++|+|...
T Consensus 40 ~~~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 40 KYSTQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQ 91 (122)
T ss_dssp SSCEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCS
T ss_pred CCeEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcC
Confidence 35678899999999999999887643 36678999888 579999999999984
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.04 E-value=0.23 Score=61.09 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=22.7
Q ss_pred CCCCCceEEEEeecCCCCCCCCCC
Q 004077 137 ARYGQDVIVGLVDNGVWPESKSFS 160 (775)
Q Consensus 137 ~~~G~GV~VgVIDtGid~~Hp~f~ 160 (775)
.+.|+||+|||+|||||+.+|-|+
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 689999999999999999999994
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=0.43 Score=52.66 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCCCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccC
Q 004077 504 QPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSE 542 (775)
Q Consensus 504 ~~~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~ 542 (775)
...+.++.||++||.. ||+|||++|+++++.
T Consensus 181 ~~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 181 DSNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp CTTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 3467899999999866 999999999999874
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=86.09 E-value=9.5 Score=33.34 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=43.2
Q ss_pred EEEEEEEEecCCCCeEEEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECc
Q 004077 687 VIVKRTVTNVGGSKSVYFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGS 741 (775)
Q Consensus 687 ~t~~~tv~n~~~~~~ty~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~ 741 (775)
-..++.+.|....+.+|++++...+++.+. .+..+++ ++++..++.|.+..+.
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 568889999999999999999987776653 3556777 6799999999998863
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.30 E-value=8 Score=35.05 Aligned_cols=89 Identities=10% Similarity=0.027 Sum_probs=58.6
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeeCC----CCcEEEEecceEEEccCCcEEEEEEEEEECccccccc-CCCceEEEEEEE
Q 004077 685 GTVIVKRTVTNVGGSKSVYFFSAKPP----MGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQG-LTKQYVFGWYRW 759 (775)
Q Consensus 685 ~~~t~~~tv~n~~~~~~ty~~~~~~~----~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~g~~~~ 759 (775)
...+-+++++|.|..+.+|++..... ..--++++|..-++ .+|++..++|++.+++...... ....-.+--|++
T Consensus 43 ~~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL 121 (140)
T 3qbt_B 43 QLQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVL 121 (140)
T ss_dssp CCEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEE
T ss_pred eeeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEE
Confidence 45677889999999999999985421 12236678999888 5799999999998753210000 111223445555
Q ss_pred E-CCccEEEeEEEEEe
Q 004077 760 T-DGLHLVRSPMAVSF 774 (775)
Q Consensus 760 ~-~~~~~v~~P~~~~~ 774 (775)
. .++.+..+|+--.|
T Consensus 122 ~Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 122 HLDRGKDYFLTISGNY 137 (140)
T ss_dssp EETTSCEEEEEEEEEE
T ss_pred EeecCCcEEEEEeccc
Confidence 4 55677788876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 775 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 4e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-12 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 1e-05 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 6e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 0.003 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 3e-10 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 0.002 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 1e-08 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-08 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 7e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 9e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 3e-04 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 0.004 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 0.001 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 151 bits (381), Expect = 4e-40
Identities = 81/516 (15%), Positives = 153/516 (29%), Gaps = 101/516 (19%)
Query: 124 WNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNS 183
W +G +LS ++ + + ++D+G +
Sbjct: 6 WGQTFVGATVLSDSQ-AGNRTICIIDSGYDRSHNDLNA---------------------- 42
Query: 184 SLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGG 243
+ G + T + P + + HGTH A T+A
Sbjct: 43 ----NNVTGTNN------------SGTGNWYQPGNNNAHGTHVAGTIAAIA--------- 77
Query: 244 FAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISIG 303
G P I+ + + D A +V+++S+G
Sbjct: 78 -NNEGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGA-----NVVTMSLG 131
Query: 304 TNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFV 363
+ R+ + + +L+ +AGN+G + S +++V A + D
Sbjct: 132 GSGSTTTERNALN----THYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHA 187
Query: 364 GPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKI 423
+EI G ++ V E +
Sbjct: 188 AFSQYTDQVEISGPGEA----------------ILSTVTVGEGRLADITIGGQSYFSNGV 231
Query: 424 VLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEY 483
V R + S A G + NG +S + I + E
Sbjct: 232 VPHNRLTPSGTSYAPAPINASATGAL-AECTVNGTSFSCGN---------MANKICLVER 281
Query: 484 IKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYIL--KPDITAPGLNILAAWS 541
+ + + I + + S P +P+++ DIT P +++ A
Sbjct: 282 VGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATG 341
Query: 542 EA----SSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTT 597
A S ++ Y ++GTSM+ PHV+ A L+ + HP+ S++ +R+AL T
Sbjct: 342 LALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNAT 401
Query: 598 AWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 633
A + G G A
Sbjct: 402 A-----------DDLSVAGRDNQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 67.8 bits (164), Expect = 3e-12
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 527 PDITAPGLNILAAWSEASSPSKLAFDKRIV-----KYTIFSGTSMSCPHVAAAAALLKAI 581
+ APG+ IL+ S ++ + Y + GTSM+ PHV A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 582 HPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKA 631
P+ IR L TA+ N G G + A
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGN-----------GWDHDTGYGLVKLDAA 436
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 46.6 bits (109), Expect = 1e-05
Identities = 52/363 (14%), Positives = 101/363 (27%), Gaps = 72/363 (19%)
Query: 15 LASSAQKQKQVYIVHFGGSDNGEKALHEI-----QETHHSYLLSVKDNEEEARASHLYSY 69
LAS + + Q Y + FG +GE +I + ++ + + +
Sbjct: 6 LASLPEIKSQGYHILFGELRDGEYTEGKILVGYNDRSEVDKIVKAVNGKVVLELPQIKVV 65
Query: 70 KHSINGFSAVLTPDEAARLSEEVV--------------SVYPSHPEKYSLQTTR--SWEF 113
+NG + D+ L+ + + +V +P+ Y ++ S
Sbjct: 66 SIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTAR 125
Query: 114 VGLDEVAKQNWNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWK 172
+E++ + W +G G ++IV +VD GV +
Sbjct: 126 DYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDL------------E 173
Query: 173 GICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAG 232
G G GTH A T+A
Sbjct: 174 GQVIAGYRPAFD-----------------------EELPAGTDSSYGGSAGTHVAGTIAA 210
Query: 233 RRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR 292
+ G AP A++ A + + A I A
Sbjct: 211 K----------KDGKGIVGVAPGAKIMPIVIFD--DPALVGGNGYVGDDYVAAGIIWATD 258
Query: 293 DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLIT 352
G V++ + + ++ ++V + N+ + P +I
Sbjct: 259 HGAKVMNH---SWGGWGYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQ 315
Query: 353 VGA 355
V A
Sbjct: 316 VAA 318
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 62.2 bits (149), Expect = 6e-11
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 526 KPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 585
+I+APG ++ + W Y SGTSM+ PHV+ AA + A +P
Sbjct: 224 DIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 586 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFR 627
S+ +RS L A + K +I ++ G G R
Sbjct: 271 SNTQLRSNLQERAKSVDIK----GGYGAAIGDDYASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 35/148 (23%)
Query: 486 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASS 545
ST V + A+F+S GP + D+ APG++I +
Sbjct: 163 STVGYPGKYPSVIAVGAVDSSNQRASFSSVGP--------ELDVMAPGVSIQSTLPGNK- 213
Query: 546 PSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKA 605
Y ++GTSM+ PHVA AAAL+ + HP+W++ +RS+L T
Sbjct: 214 ------------YGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTT------- 254
Query: 606 LPITNADGSIATPFSFGSGHFRPTKAAD 633
+ F +G G AA
Sbjct: 255 -------TKLGDSFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 38.0 bits (87), Expect = 0.003
Identities = 38/232 (16%), Positives = 66/232 (28%), Gaps = 60/232 (25%)
Query: 124 WNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 182
+ + L Y G +V V ++D+G+ G G +
Sbjct: 6 YGVSQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLKVAG--------------GASMV 51
Query: 183 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 242
S + +D + HGTH A TVA
Sbjct: 52 PS---------------------------ETNPFQDNNSHGTHVAGTVAALNNS------ 78
Query: 243 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302
G AP A L K A + + ++ I+ AI + + V+++S+
Sbjct: 79 ----IGVLGVAPSASLYAVKVLGAD--------GSGQYSWIINGIEWAIANNMDVINMSL 126
Query: 303 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVG 354
G A + + + V + + P +I VG
Sbjct: 127 GGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVG 178
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 59.6 bits (143), Expect = 3e-10
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 35/146 (23%)
Query: 486 STNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASS 545
+T A V A+F+S G + ++ APG + + + +
Sbjct: 162 NTIGYPAKYDSVIAVGAVDSNSNRASFSSVGA--------ELEVMAPGAGVYSTYPTNT- 212
Query: 546 PSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKA 605
Y +GTSM+ PHVA AAAL+ + HP+ S++ +R+ L +TA
Sbjct: 213 ------------YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA------- 253
Query: 606 LPITNADGSIATPFSFGSGHFRPTKA 631
+ + F +G G A
Sbjct: 254 -------TYLGSSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 38.4 bits (88), Expect = 0.002
Identities = 50/325 (15%), Positives = 101/325 (31%), Gaps = 74/325 (22%)
Query: 124 WNHFNMGQDLLSKARY-GQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFN 182
+ + D + + G +V V ++D G+
Sbjct: 6 YGIPLIKADKVQAQGFKGANVKVAVLDTGIQASHPDL----------------------- 42
Query: 183 SSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFG 242
++G + + D +GHGTH +
Sbjct: 43 ------NVVGGA-------------SFVAGEAYNTDGNGHGTH----------VAGTVAA 73
Query: 243 GFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLSISI 302
G AP L K + + + +++ I+ A +G+ V+++
Sbjct: 74 LDNTTGVLGVAPSVSLYAVKVLN--------SSGSGSYSGIVSGIEWATTNGMDVINM-- 123
Query: 303 GTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPW----LITVGAGSL 358
+ A + NA ++V +AGNSG + S+ + P +I VGA
Sbjct: 124 --SLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS 181
Query: 359 DRDFVGPVVLGTGMEII--GKTVTPYNLKKMHPLVYAADVVVPGVHQNETN-QCLPGSLT 415
+ + +G +E++ G V + + + P V +L+
Sbjct: 182 NSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
Query: 416 PEKVKGKIVL--CMRGSGFKLSKGM 438
+V+ ++ GS F KG+
Sbjct: 242 ASQVRNRLSSTATYLGSSFYYGKGL 266
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 57.2 bits (137), Expect = 2e-09
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 21/100 (21%)
Query: 499 TVLHTQPAPFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKY 558
V T A+F+ G DI APG+N+ + + ++ Y
Sbjct: 170 AVGATDQNNNRASFSQYGAG--------LDIVAPGVNVQSTYPGST-------------Y 208
Query: 559 TIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
+GTSM+ PHVA AAAL+K +P WS+ IR+ L TA
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTA 248
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
+GTS S P A AL + + + ++ ++ T+ + A
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 312
Query: 618 PFSFGSGHFRPTKAAD 633
S+G G
Sbjct: 313 SHSYGYGLLDAGAMVA 328
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 53.7 bits (127), Expect = 3e-08
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 521 DPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKA 580
+KPD+ APG IL+A S + S + KY GTSM+ P VA A L+
Sbjct: 212 KDGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLRE 270
Query: 581 IHPD-----WSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAAD 633
+ +++AL+ A G + G G K+ +
Sbjct: 271 HFVKNRGITPKPSLLKAALIAGA-----------ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 49.3 bits (116), Expect = 7e-07
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 557 KYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
SGTSM+ PHVA AA L + +++A R + TA
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA 256
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 9e-06
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIAT 617
GTS + P A LL +P+ + ++ + +A A
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 618 P-FSFGSGHFRPTKA 631
+G G K
Sbjct: 317 YSHRYGFGKIDAHKL 331
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
Y SGTSM+ PHVA AALL ++ IR A+ TA
Sbjct: 219 YAYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTA 257
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 37.6 bits (86), Expect = 0.004
Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 62/236 (26%)
Query: 121 KQNWNHFNMGQDLL-SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGV 179
+ N D + + ++D GV
Sbjct: 10 GYQYGPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG------------------ 51
Query: 180 AFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNAS 239
++ + ++D P D++ HGTH A A
Sbjct: 52 ----------------------KVIKGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNA-- 87
Query: 240 AFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIRDGVHVLS 299
+G AP R+ +A + +D+ AI A G V++
Sbjct: 88 -------TGIAGMAPNTRILAVRALD--------RNGSGTLSDIADAIIYAADSGAEVIN 132
Query: 300 ISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGA 355
+S+G + + + A +V +AGN+G + + +I VGA
Sbjct: 133 LSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 39.7 bits (91), Expect = 0.001
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 558 YTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTA 598
Y SGTSM+ PHVA A LL + + IR+A+ TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQGRSA--SNIRAAIENTA 256
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 775 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.38 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.27 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.75 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.15 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 95.35 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=8e-52 Score=484.49 Aligned_cols=288 Identities=24% Similarity=0.207 Sum_probs=221.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
+.|....+|+||+|||||||||++||+|.++ ++..+++..+... .
T Consensus 145 ~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~---------------------------~~~~~~~~~~~~~--------~ 189 (671)
T d1r6va_ 145 QQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ---------------------------VIAGYRPAFDEEL--------P 189 (671)
T ss_dssp HHHHHHCSCTTCEEEEEESCCBTTSGGGTTT---------------------------BCCEEEGGGTEEE--------C
T ss_pred HHHHhcCCCCCCEEEEEcCCcCCCChhhcCC---------------------------cccCccccccCCC--------C
Confidence 4444567999999999999999999999743 1222222221111 1
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCC----CCCCccCCCCCCHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWAT----PKASKAAGNTCFEADMLAAI 287 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~----~~g~~~~~~~~~~~~i~~ai 287 (775)
...++.|..||||||||||||+.. +..+.||||+|+|+++|++++. ..| ....+.+++||
T Consensus 190 ~~~~~~d~~gHGT~VAGiiaa~~~----------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g------~~~~~~i~~ai 253 (671)
T d1r6va_ 190 AGTDSSYGGSAGTHVAGTIAAKKD----------GKGIVGVAPGAKIMPIVIFDDPALVGGNG------YVGDDYVAAGI 253 (671)
T ss_dssp TTCBCCTTCSHHHHHHHHHHCCCS----------SSSCCCSCTTSEEEEEESBCCHHHHCTTS------BCCHHHHHHHH
T ss_pred CCCcCcccCCCCccccceeeeecc----------ccceeeecCcceEEEEEecccccccCCCC------cccHHHHHHHH
Confidence 113456788999999999999731 1235799999999999999752 112 46778899999
Q ss_pred HHHHhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCC-CCCCCCCCceEEecccccccccccce
Q 004077 288 DDAIRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAP-SSLSNLAPWLITVGAGSLDRDFVGPV 366 (775)
Q Consensus 288 ~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgAs~~~~~~~~~~ 366 (775)
+||+++|++|||||||+. .....+..++..+.++|+++|+||||++.+. ...+...|++|+|||++...
T Consensus 254 ~~a~~~g~~Vin~S~g~~----~~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~------ 323 (671)
T d1r6va_ 254 IWATDHGAKVMNHSWGGW----GYSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG------ 323 (671)
T ss_dssp HHHHHTTCSEEEECEEBS----CCCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET------
T ss_pred HHHHhCCCcEEecccccc----cCChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC------
Confidence 999999999999999983 2345677788899999999999999998654 33445669999999864211
Q ss_pred EeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCce
Q 004077 367 VLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGV 446 (775)
Q Consensus 367 ~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~ 446 (775)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCC
Q 004077 447 GLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILK 526 (775)
Q Consensus 447 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~K 526 (775)
....++.||+|||.+
T Consensus 324 ----------------------------------------------------------~~~~~a~fS~~g~~~------- 338 (671)
T d1r6va_ 324 ----------------------------------------------------------GTFRVAGFSSRSDGV------- 338 (671)
T ss_dssp ----------------------------------------------------------TEEEECSSSCCCTTE-------
T ss_pred ----------------------------------------------------------CcceeeeccCCCCCc-------
Confidence 012678999999986
Q ss_pred CceeeCCCcEEEcccCCCCCCcc-----cCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 004077 527 PDITAPGLNILAAWSEASSPSKL-----AFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMK 601 (775)
Q Consensus 527 PDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~ 601 (775)
||+|||++|+|+++........ ......+.|..++|||||||||||++|||+|++|+|++++||++|++||+++
T Consensus 339 -dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~ 417 (671)
T d1r6va_ 339 -SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDF 417 (671)
T ss_dssp -EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCS
T ss_pred -eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccC
Confidence 9999999999998753321111 1112346899999999999999999999999999999999999999999987
Q ss_pred CCCCCcccCCCCCCCCCCccceeccCccccCCCCee
Q 004077 602 NNKALPITNADGSIATPFSFGSGHFRPTKAADPGLV 637 (775)
Q Consensus 602 ~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv 637 (775)
... ..+..||||+||+.+||+..+.
T Consensus 418 ~~~-----------g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 418 NGN-----------GWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp SSS-----------SCBTTTBTCBCCHHHHHHCCCC
T ss_pred CCC-----------CCCCCcccChhCHHHHhhCcCC
Confidence 543 2567899999999999986553
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=7.9e-50 Score=447.46 Aligned_cols=376 Identities=22% Similarity=0.248 Sum_probs=242.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|. .+|+||+|||||||||++||+|+++ ++..+++... .
T Consensus 15 ~~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~~-----------~ 54 (435)
T d1v6ca_ 15 VLSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSGT-----------G 54 (435)
T ss_dssp GSCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTTS-----------C
T ss_pred hhhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCCC-----------C
Confidence 4554 5899999999999999999999743 2222332221 1
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecC--CCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAP--LARLAIYKACWATPKASKAAGNTCFEADMLAAIDD 289 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP--~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~ 289 (775)
+...+.|++||||||||||||+.. +..+.|||| +++|+.+|++... . .+...++++||++
T Consensus 55 ~~~~~~d~~gHGThvAgiiag~~~----------~~g~~GvAp~~~~~l~~~~~~~~~--~------~~~~~~~~~a~~~ 116 (435)
T d1v6ca_ 55 NWYQPGNNNAHGTHVAGTIAAIAN----------NEGVVGVMPNQNANIHIVKVFNEA--G------WGYSSSLVAAIDT 116 (435)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCCCS----------SSBCCCSSCSSCSEEEEEECEETT--E------ECCSSCHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHhccCC----------CCceEEEecccCceeeeeeccccc--c------cchhhhhhhHHHH
Confidence 234677899999999999999731 123579999 8999999999876 2 3567779999999
Q ss_pred HHh-CCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEe
Q 004077 290 AIR-DGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 290 a~~-~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
+++ .+++|||+|||... ....+..++..+.++|++||+||||+|+...+.+...+++|+||+++.+.....+...
T Consensus 117 a~~~~~~~vin~S~g~~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~ 192 (435)
T d1v6ca_ 117 CVNSGGANVVTMSLGGSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQY 192 (435)
T ss_dssp HHHTTCCSEEEECCCBSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCC
T ss_pred HhhcccceEEecccCCCC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCC
Confidence 986 59999999999832 3455667778899999999999999998888888888999999999877654443333
Q ss_pred CCCcEE--eeeeeccCCCCcceee---EEecccccCC-c---CCCCCCCcC--------------------CCCCCCCce
Q 004077 369 GTGMEI--IGKTVTPYNLKKMHPL---VYAADVVVPG-V---HQNETNQCL--------------------PGSLTPEKV 419 (775)
Q Consensus 369 ~~~~~~--~g~~~~~~~~~~~~~~---v~~~~~~~~~-~---~~~~~~~c~--------------------~~~~~~~~~ 419 (775)
+....+ +|..+..........+ .......... . .......|. ...+...++
T Consensus 193 g~~vdv~apG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (435)
T d1v6ca_ 193 TDQVEISGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNM 272 (435)
T ss_dssp CSSEEEEEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCC
T ss_pred CCceEEeecccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeecccc
Confidence 322211 1221111000000000 0000000000 0 000000000 011112334
Q ss_pred eceEEEEecCCc-----chhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEE
Q 004077 420 KGKIVLCMRGSG-----FKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAII 494 (775)
Q Consensus 420 ~gkivl~~~g~~-----~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i 494 (775)
.+++.++.+... ....+.......+..+++.+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 311 (435)
T d1v6ca_ 273 ANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSN----------------------------------------- 311 (435)
T ss_dssp TTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECC-----------------------------------------
T ss_pred ccccceeeccCCccccceeeeeceeecccCCcceEEecc-----------------------------------------
Confidence 455555554321 2333444445555555554443
Q ss_pred EeceEEeecCCCCccccccCCCCCCCC--CCCCCCceeeCCCcEEEcccCCC----CCCcccCCccccccEEeeccCchh
Q 004077 495 KQARTVLHTQPAPFMANFTSRGPNALD--PYILKPDITAPGLNILAAWSEAS----SPSKLAFDKRIVKYTIFSGTSMSC 568 (775)
Q Consensus 495 ~~~~~~~~~~~~~~~a~fSS~GP~~~~--d~~~KPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAa 568 (775)
+.+|.... ....||||.+||..|.++..... .............|..||||||||
T Consensus 312 -------------------~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAa 372 (435)
T d1v6ca_ 312 -------------------SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372 (435)
T ss_dssp -------------------SSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHH
T ss_pred -------------------CCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHH
Confidence 22222211 24679999999998876532100 000000111236799999999999
Q ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCCCeeeecchhhHHHh
Q 004077 569 PHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADPGLVYDASYEDYLLY 648 (775)
Q Consensus 569 P~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~~~~~~ 648 (775)
|||||++|||+|+||+|++++||++||+||+++.. .+++++||+|+||+.+|+ +||..
T Consensus 373 P~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~-----------~~~~~~~G~G~vn~~~A~-----------~~l~~ 430 (435)
T d1v6ca_ 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSV-----------AGRDNQTGYGMINAVAAK-----------AYLDE 430 (435)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS-----------SSCBTTTBTCBCCHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC-----------CCCCCCcccceecHHHHH-----------HHHHh
Confidence 99999999999999999999999999999997743 346789999999999995 47776
Q ss_pred hhc
Q 004077 649 LCS 651 (775)
Q Consensus 649 ~~~ 651 (775)
.|.
T Consensus 431 ~~~ 433 (435)
T d1v6ca_ 431 SCT 433 (435)
T ss_dssp CTT
T ss_pred cCC
Confidence 663
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.2e-48 Score=411.46 Aligned_cols=258 Identities=26% Similarity=0.331 Sum_probs=210.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.++ ++..++|...
T Consensus 22 ~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~------------ 62 (280)
T d1dbia_ 22 YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN------------ 62 (280)
T ss_dssp HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT------------
T ss_pred HHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC------------
Confidence 8999999999999999999999999999642 3344444332
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..+|||||||+|+|.. .....+.||||+|+|+.+|+++.. + .+...++++||+|++
T Consensus 63 -~~~~~d~~~HGT~vag~i~~~~---------~~~~~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~a~ 124 (280)
T d1dbia_ 63 -DYDPMDLNNHGTHVAGIAAAET---------NNATGIAGMAPNTRILAVRALDRN--G------SGTLSDIADAIIYAA 124 (280)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCC---------SSSSSCCCSSSSCEEEEEECCCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CCccccccccccceeEeeeccc---------cCCCceeEEeccCEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 1246688999999999999873 223446799999999999999876 4 478999999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
++|++|||||||... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.
T Consensus 125 ~~g~~iin~S~g~~~----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------------- 187 (280)
T d1dbia_ 125 DSGAEVINLSLGCDC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------- 187 (280)
T ss_dssp HTTCSEEEECCSSCC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------
T ss_pred HcCCcEeeccccccc----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-------------
Confidence 999999999999832 334556677889999999999999999766666667789999998532
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++||.. |++|
T Consensus 188 ------------------------------------------------------~~~~a~~S~~g~~~--------d~~a 205 (280)
T d1dbia_ 188 ------------------------------------------------------YDRLASFSNYGTWV--------DVVA 205 (280)
T ss_dssp ------------------------------------------------------TSCBCTTBCCSTTC--------CEEE
T ss_pred ------------------------------------------------------CCCcCCcCCCCCcc--------cccC
Confidence 34788999999976 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||.+|++.... ..|..++|||||||+|||++|||+|. .+++.+||++|++||+++..
T Consensus 206 pg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-------- 262 (280)
T d1dbia_ 206 PGVDIVSTITG-------------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-------- 262 (280)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT--------
T ss_pred CccceeccccC-------------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC--------
Confidence 99999999876 68999999999999999999999995 55899999999999987643
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
+...+|+|+||+++||+
T Consensus 263 -----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 263 -----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp -----BTTTBSSEECCHHHHHT
T ss_pred -----CCCcCCCCeEcHHHHcC
Confidence 35679999999999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.9e-48 Score=409.05 Aligned_cols=256 Identities=29% Similarity=0.441 Sum_probs=212.0
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|+ +...++|..+
T Consensus 15 ~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~------------ 53 (274)
T d1r0re_ 15 KVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG------------ 53 (274)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT------------
T ss_pred HHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC------------
Confidence 78999999999999999999999999994 2233444332
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||++... ...+.|+||+|+|+.+|+++.. + ....++++++++++.
T Consensus 54 -~~~~~d~~gHGT~vAgii~~~~~----------~~~~~gvap~a~i~~~~~~~~~--~------~~~~~~i~~ai~~a~ 114 (274)
T d1r0re_ 54 -EAYNTDGNGHGTHVAGTVAALDN----------TTGVLGVAPSVSLYAVKVLNSS--G------SGSYSGIVSGIEWAT 114 (274)
T ss_dssp -CCTTCCSSSHHHHHHHHHHCCSS----------SSBCCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred -CCCCCCccccccccccccccccc----------cccccccCCCcEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 12456788999999999998632 1224699999999999999876 4 467899999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC----CCCCCCceEEecccccccccccceE
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
+++++|||+|||... ..........++.++++++|+||||+|..... .+...+++|+|||++.
T Consensus 115 ~~~~~i~n~S~~~~~----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 181 (274)
T d1r0re_ 115 TNGMDVINMSLGGAS----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------- 181 (274)
T ss_dssp HTTCSEEEECEEBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------
T ss_pred hcCCceecccccccc----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------
Confidence 999999999999832 33445556678899999999999999865332 2334578999998542
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||.+
T Consensus 182 ----------------------------------------------------------~~~~~~~s~~g~~~-------- 195 (274)
T d1r0re_ 182 ----------------------------------------------------------NSNRASFSSVGAEL-------- 195 (274)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTE--------
T ss_pred ----------------------------------------------------------CCCcccccCCCCCE--------
Confidence 24678999999854
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
||+|||++|+++.+. +.|..++|||||||+|||++|||+|++|++++++||++|++||+++.
T Consensus 196 di~APG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----- 257 (274)
T d1r0re_ 196 EVMAPGAGVYSTYPT-------------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG----- 257 (274)
T ss_dssp EEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----
T ss_pred EEEecCCCcccccCC-------------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----
Confidence 999999999999876 68999999999999999999999999999999999999999998763
Q ss_pred ccCCCCCCCCCCccceeccCccccCC
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
+++.+|+|+||+.+|++
T Consensus 258 ---------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 258 ---------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------CHHHHTTCBCCHHHHTC
T ss_pred ---------CCCceEcCeecHHHhcC
Confidence 35679999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=5.3e-48 Score=406.74 Aligned_cols=257 Identities=26% Similarity=0.376 Sum_probs=217.2
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
++|..+ +|+||+|+|||||||++||+|.+ +++..++|.++
T Consensus 22 ~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~------------ 61 (279)
T d1thma_ 22 QAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN------------ 61 (279)
T ss_dssp HHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT------------
T ss_pred HHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------Ceecccccccc------------
Confidence 889887 99999999999999999999964 24444555432
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..+|||||||+|++... ....+.||||+|+|+.+|++... + .+...+++++|++++
T Consensus 62 -~~~~~d~~~HGT~vag~i~~~~~---------~~~~~~GvAp~a~l~~~~v~~~~--~------~~~~~~~~~ai~~~~ 123 (279)
T d1thma_ 62 -DSTPQNGNGHGTHCAGIAAAVTN---------NSTGIAGTAPKASILAVRVLDNS--G------SGTWTAVANGITYAA 123 (279)
T ss_dssp -BSCCCCSSSHHHHHHHHHHCCCS---------SSSSCCCSSTTCEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred -CcccccccccccccceeeeeccC---------CCccccccCCcceEEEEEEEecC--C------CCcHHHHHHHHHHHh
Confidence 13567889999999999998742 23346799999999999999876 4 468899999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
+.+++|||||||.. ........+...+.++|+++|+|+||+|..........+++++|||++.
T Consensus 124 ~~~~~i~n~S~G~~----~~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~------------- 186 (279)
T d1thma_ 124 DQGAKVISLSLGGT----VGNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------- 186 (279)
T ss_dssp HTTCSEEEECCCBS----SCCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------
T ss_pred hcCCceeccccCcc----ccchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-------------
Confidence 99999999999983 2345566677889999999999999999877777777799999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++|++. ||.|
T Consensus 187 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 204 (279)
T d1thma_ 187 ------------------------------------------------------NDNKSSFSTYGSWV--------DVAA 204 (279)
T ss_dssp ------------------------------------------------------TSCBCTTCCCCTTC--------CEEE
T ss_pred ------------------------------------------------------CCCCccccCCCceE--------EEee
Confidence 24778999999987 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||.+|+++.+. +.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++..
T Consensus 205 pg~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-------- 261 (279)
T d1thma_ 205 PGSSIYSTYPT-------------STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-------- 261 (279)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT--------
T ss_pred eeeccccccCc-------------ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC--------
Confidence 99999999887 6899999999999999999999999765 789999999999987642
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
.+..||+|+||+.+||+
T Consensus 262 -----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 262 -----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----BTTTBSSEECCHHHHHH
T ss_pred -----CCCcceeeeEcHHHhhC
Confidence 35679999999999985
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=6.9e-48 Score=406.25 Aligned_cols=258 Identities=31% Similarity=0.435 Sum_probs=212.9
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|.++++|+||+|||||||||++||+|+.. ..+++...
T Consensus 15 ~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~-----------------------------~~~~~~~~------------ 53 (281)
T d1to2e_ 15 ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA-----------------------------GGASMVPS------------ 53 (281)
T ss_dssp HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE-----------------------------EEEECCTT------------
T ss_pred HHHHCCCCCCCeEEEEECCCCCCCChhhhhc-----------------------------CCccccCC------------
Confidence 8999999999999999999999999999521 22222221
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
+.....+..+|||||||||+|... .....||||+|+|+.+|++... + ....++++++|+|++
T Consensus 54 ~~~~~~~~~~HGT~vAgiiag~~~----------~~~~~giAp~a~l~~~kv~~~~--~------~~~~~~~~~ai~~a~ 115 (281)
T d1to2e_ 54 ETNPFQDNNSHGTHVAGTVAALNN----------SIGVLGVAPSASLYAVKVLGAD--G------SGQYSWIINGIEWAI 115 (281)
T ss_dssp CCCTTCCSSSHHHHHHHHHHCCSS----------SSSBCCSSTTSEEEEEECSCTT--S------EECHHHHHHHHHHHH
T ss_pred CCCCCcCcCCCCceeecccccCCC----------CCCcceeecccEEEEEEEeCCC--C------CcCHHHHHHHHHHHH
Confidence 111223467999999999998631 1224699999999999999876 3 467889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC----CCCCCCceEEecccccccccccceE
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS----LSNLAPWLITVGAGSLDRDFVGPVV 367 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgAs~~~~~~~~~~~ 367 (775)
+.+++|||+|||.. .....+..+++.+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 116 ~~~~~v~n~S~g~~----~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------- 182 (281)
T d1to2e_ 116 ANNMDVINMSLGGP----SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------- 182 (281)
T ss_dssp HTTCSEEEECEEBS----CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------
T ss_pred hccccccccccCCC----cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC---------
Confidence 99999999999983 345667778889999999999999999865322 2344588999998542
Q ss_pred eCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceE
Q 004077 368 LGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVG 447 (775)
Q Consensus 368 ~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g 447 (775)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCC
Q 004077 448 LILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKP 527 (775)
Q Consensus 448 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KP 527 (775)
.+.++.||++||.+
T Consensus 183 ----------------------------------------------------------~~~~~~~S~~G~~~-------- 196 (281)
T d1to2e_ 183 ----------------------------------------------------------SNQRASFSSVGPEL-------- 196 (281)
T ss_dssp ----------------------------------------------------------TSCBCTTCCCSTTC--------
T ss_pred ----------------------------------------------------------CCCCCcccCCCCCc--------
Confidence 24678999999976
Q ss_pred ceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCc
Q 004077 528 DITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALP 607 (775)
Q Consensus 528 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~ 607 (775)
|+.|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.
T Consensus 197 d~~apG~~i~s~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~----- 258 (281)
T d1to2e_ 197 DVMAPGVSIQSTLPG-------------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG----- 258 (281)
T ss_dssp CEEEECSSEEEEETT-------------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----
T ss_pred cccCCCCCceeecCC-------------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----
Confidence 999999999999876 68899999999999999999999999999999999999999998764
Q ss_pred ccCCCCCCCCCCccceeccCccccCCC
Q 004077 608 ITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 608 ~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
++..||+|+||+.+|++.
T Consensus 259 ---------~~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 259 ---------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp ---------CHHHHTTCBCCHHHHTSS
T ss_pred ---------CCCCcccCcccHHHHHhh
Confidence 245699999999999984
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.5e-47 Score=400.92 Aligned_cols=255 Identities=30% Similarity=0.425 Sum_probs=214.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+||||||||+ +||+|+.. ..++|...
T Consensus 15 ~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~-----------------------------~~~~~~~~------------ 52 (269)
T d1gcia_ 15 AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR-----------------------------GGASFVPG------------ 52 (269)
T ss_dssp HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE-----------------------------EEEECSTT------------
T ss_pred HHHhCCCCCCCeEEEEECCCCC-CCcccCcc-----------------------------ccccccCC------------
Confidence 8999999999999999999998 89999521 22333321
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
...+.|..||||||||||++... .....|+||+|+|+.+|++... + ......+.++++++.
T Consensus 53 -~~~~~d~~~HGT~vAgii~~~~~----------~~~~~giap~a~i~~~~v~~~~--~------~~~~~~~~~ai~~~~ 113 (269)
T d1gcia_ 53 -EPSTQDGNGHGTHVAGTIAALNN----------SIGVLGVAPSAELYAVKVLGAS--G------SGSVSSIAQGLEWAG 113 (269)
T ss_dssp -CCSCSCSSSHHHHHHHHHHCCCS----------SSBCCCSSTTCEEEEEECBCTT--S------CBCHHHHHHHHHHHH
T ss_pred -CCCccccchhhheecccccccCC----------CccccccCCceEEEEEEEecCC--C------CccHHHHHHHHHHHH
Confidence 12456788999999999987632 2235699999999999999876 3 468889999999999
Q ss_pred hCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCCCCCceEEecccccccccccceEeCCC
Q 004077 292 RDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSNLAPWLITVGAGSLDRDFVGPVVLGTG 371 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgAs~~~~~~~~~~~~~~~ 371 (775)
.+++++||+|||... .......+...+.++|++||+||||+|......+...|++|+||+++.
T Consensus 114 ~~~~~~in~s~g~~~----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------- 176 (269)
T d1gcia_ 114 NNGMHVANLSLGSPS----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------- 176 (269)
T ss_dssp HTTCSEEEECCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------
T ss_pred hcccccccccccccc----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc-------------
Confidence 999999999999832 234455667788999999999999999876666677799999998542
Q ss_pred cEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEEEEe
Q 004077 372 MEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILG 451 (775)
Q Consensus 372 ~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~ 451 (775)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCceee
Q 004077 452 NSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPDITA 531 (775)
Q Consensus 452 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPDI~A 531 (775)
.+.++.||++||.. ||+|
T Consensus 177 ------------------------------------------------------~~~~~~~S~~G~~~--------di~A 194 (269)
T d1gcia_ 177 ------------------------------------------------------NNNRASFSQYGAGL--------DIVA 194 (269)
T ss_dssp ------------------------------------------------------TSCBCTTCCCSTTE--------EEEE
T ss_pred ------------------------------------------------------CCCcccccCCCCCc--------eEEE
Confidence 24678999999976 9999
Q ss_pred CCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcccCC
Q 004077 532 PGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNKALPITNA 611 (775)
Q Consensus 532 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~g~~~~~~ 611 (775)
||.++.++.+. ..|..++|||||||+|||++|||+|++|++++++||++|++||+++.
T Consensus 195 pg~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g--------- 252 (269)
T d1gcia_ 195 PGVNVQSTYPG-------------STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG--------- 252 (269)
T ss_dssp ECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS---------
T ss_pred eeecceeccCC-------------CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC---------
Confidence 99999999876 68999999999999999999999999999999999999999998764
Q ss_pred CCCCCCCCccceeccCccccCC
Q 004077 612 DGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 612 ~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
++..||+|+||+++|++
T Consensus 253 -----~~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 253 -----STNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----CHHHHTTCBCCHHHHTC
T ss_pred -----CCCCcccCeEcHHHhcC
Confidence 34568999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.5e-43 Score=376.30 Aligned_cols=286 Identities=26% Similarity=0.316 Sum_probs=215.3
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.++ +...++|......
T Consensus 17 ~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~~--------- 60 (309)
T d2ixta1 17 DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATTP--------- 60 (309)
T ss_dssp TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSSC---------
T ss_pred hhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCCC---------
Confidence 8899999999999999999999999999642 3334444432111
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|..||||||||||+|.. ......+.||||+|+|+.+|++... + .+..++++.++++++
T Consensus 61 ~~~~~~d~~gHGT~VAgiiaa~~--------~~~~~~~~GvAp~a~l~~~~~~~~~--~------~~~~~~~~~~~~~a~ 124 (309)
T d2ixta1 61 INNSCTDRNGHGTHVAGTALADG--------GSDQAGIYGVAPDADLWAYKVLLDS--G------SGYSDDIAAAIRHAA 124 (309)
T ss_dssp EETCCCCSSSHHHHHHHHHHCBC--------CTTSCSCBCSCTTSEEEEEECSCTT--S------CCCHHHHHHHHHHHH
T ss_pred CCCCccccccccccccccccccc--------cccchhhhhhhhhccceeeeeecCC--C------Ccccccccccccccc
Confidence 11245678899999999999874 2223346799999999999998876 3 468889999999988
Q ss_pred hC-----CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCC--CCCceEEeccccccccccc
Q 004077 292 RD-----GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVG 364 (775)
Q Consensus 292 ~~-----gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgAs~~~~~~~~ 364 (775)
+. ...|+|+|++.. ........+...+.++|+++|+||||++........ ..+++++|++.+.......
T Consensus 125 ~~~~~~~~~~v~~~s~~~~----~~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~ 200 (309)
T d2ixta1 125 DQATATGTKTIISMSLGSS----ANNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT 200 (309)
T ss_dssp HHHHHHTCCEEEEECCCBS----SCCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE
T ss_pred ccccccccccccccccccc----ccccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc
Confidence 75 447999999982 233455666778899999999999999976555443 3478888886432110000
Q ss_pred ceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcC
Q 004077 365 PVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAG 444 (775)
Q Consensus 365 ~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~G 444 (775)
.
T Consensus 201 ~------------------------------------------------------------------------------- 201 (309)
T d2ixta1 201 Y------------------------------------------------------------------------------- 201 (309)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred ceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCC
Q 004077 445 GVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYI 524 (775)
Q Consensus 445 a~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~ 524 (775)
..........++++|+.. ...
T Consensus 202 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~--~~~ 222 (309)
T d2ixta1 202 ---------------------------------------------------------RVADYSSRGYISTAGDYV--IQE 222 (309)
T ss_dssp ---------------------------------------------------------EECTTSCCCCTTTTTSSS--CCT
T ss_pred ---------------------------------------------------------cccccccccccccccccc--cCC
Confidence 000112444667777765 366
Q ss_pred CCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcccccCCC
Q 004077 525 LKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAWMKNNK 604 (775)
Q Consensus 525 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~~~~~~ 604 (775)
.||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|+|++++||++|++||++++..
T Consensus 223 ~~vdi~apG~~~~s~~~~-------------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~ 289 (309)
T d2ixta1 223 GDIEISAPGSSVYSTWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIK 289 (309)
T ss_dssp TCCCEEEECSSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCC
T ss_pred CcceeecCCCceeeecCC-------------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC
Confidence 899999999999999876 6899999999999999999999999999999999999999999987654
Q ss_pred CCcccCCCCCCCCCCccceeccCc
Q 004077 605 ALPITNADGSIATPFSFGSGHFRP 628 (775)
Q Consensus 605 g~~~~~~~~~~~~~~~~G~G~vn~ 628 (775)
+.. ......++.+|+|++|+
T Consensus 290 ~~~----g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 290 GGY----GAAIGDDYASGFGFARV 309 (309)
T ss_dssp BST----TCCSSSBTTTBTCBCCC
T ss_pred CCc----CCccCCCcccCCCEecC
Confidence 321 12345677889999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=1.7e-42 Score=364.29 Aligned_cols=256 Identities=27% Similarity=0.302 Sum_probs=199.3
Q ss_pred cccchhhhcccCcccccccccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeee
Q 004077 114 VGLDEVAKQNWNHFNMGQDLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGA 193 (775)
Q Consensus 114 ~gl~~~~~~~~~~~~~~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~ 193 (775)
|||.+++++... ....|....+|+||+|||||||||++||+|.++ +...
T Consensus 8 wgl~~i~~~~~~----~~~~~~~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~ 56 (279)
T d2pwaa1 8 WGLARISSTSPG----TSTYYYDESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMV 56 (279)
T ss_dssp HHHHHHTCSSTT----CCCEECCTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEE
T ss_pred CchhhhCCCCcC----CCcceecCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceec
Confidence 577766432221 013333467999999999999999999999743 1111
Q ss_pred eecccccccccCCCCCCCCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCcc
Q 004077 194 RYYLKGFEQLYGPLNATEDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKA 273 (775)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~ 273 (775)
+.+ ...+.|..||||||||||+|+. .|+||+|+|+.+|++... .
T Consensus 57 ~~~----------------~~~~~d~~gHGT~VAgiia~~~---------------~G~a~~a~l~~~~v~~~~--~--- 100 (279)
T d2pwaa1 57 KTY----------------YYSSRDGNGHGTHCAGTVGSRT---------------YGVAKKTQLFGVKVLDDN--G--- 100 (279)
T ss_dssp EES----------------SSCSSCSSSHHHHHHHHHHCTT---------------TCSSTTCEEEEEECSCTT--S---
T ss_pred cCC----------------CCCcccccCccccccccccccc---------------cccCCCccccceeeecCC--c---
Confidence 111 1135578899999999999862 499999999999998876 3
Q ss_pred CCCCCCHHHHHHHHHHHHhC-------CceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCC-CCC
Q 004077 274 AGNTCFEADMLAAIDDAIRD-------GVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSS-LSN 345 (775)
Q Consensus 274 ~~~~~~~~~i~~ai~~a~~~-------gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~ 345 (775)
....+.+..+++++... +++|+|+|||. ...+.+..++.++.++|+++|+||||++.+... .+.
T Consensus 101 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~-----~~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~ 172 (279)
T d2pwaa1 101 ---SGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGG-----GYSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPA 172 (279)
T ss_dssp ---CCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCE-----ECCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETT
T ss_pred ---ccccccccchhheecccccccccccccceeccCCC-----ccccccchhhhhhhhCCcEEEEeCccccccccccCCc
Confidence 36788899999998764 45699999998 234667778888999999999999999865333 334
Q ss_pred CCCceEEecccccccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEE
Q 004077 346 LAPWLITVGAGSLDRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVL 425 (775)
Q Consensus 346 ~~p~vitVgAs~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl 425 (775)
..|++|+|||++.
T Consensus 173 ~~~~vi~VgA~~~------------------------------------------------------------------- 185 (279)
T d2pwaa1 173 SEPSVCTVGASDR------------------------------------------------------------------- 185 (279)
T ss_dssp TCTTSEEEEEECT-------------------------------------------------------------------
T ss_pred cCCceEEeeeEee-------------------------------------------------------------------
Confidence 5688999998542
Q ss_pred EecCCcchhhhhhHhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCC
Q 004077 426 CMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQP 505 (775)
Q Consensus 426 ~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~ 505 (775)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccCCCCCCCCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCC
Q 004077 506 APFMANFTSRGPNALDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDW 585 (775)
Q Consensus 506 ~~~~a~fSS~GP~~~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~ 585 (775)
.+.++.||++||.. ||+|||.+|+++++. +.|..++|||||||+|||++|||+|++|.+
T Consensus 186 ~g~~~~~S~~G~~~--------dv~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~ 244 (279)
T d2pwaa1 186 YDRRSSFSNYGSVL--------DIFGPGTDILSTWIG-------------GSTRSISGTSMATPHVAGLAAYLMTLGKTT 244 (279)
T ss_dssp TSBBCTTCCBSTTC--------CEEEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cCCCccccCCCCcc--------ccccccccccccccC-------------CcccCCCcchhHHHHHHHHHHHHHHhCCCC
Confidence 34778999999976 999999999999887 789999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCCcccCCCCCCCCCCccceeccCc
Q 004077 586 SSAAIRSALMTTAWMKNNKALPITNADGSIATPFSFGSGHFRP 628 (775)
Q Consensus 586 s~~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~ 628 (775)
+++++|. |++||++.. ....|+|++|+
T Consensus 245 ~~~~~~~-ll~ta~~~~---------------~~~~g~g~~n~ 271 (279)
T d2pwaa1 245 AASACRY-IADTANKGD---------------LSNIPFGTVNL 271 (279)
T ss_dssp TTTHHHH-HHHHSEESC---------------CBSCCTTSCCE
T ss_pred hHHHHHH-HHHhCcCCC---------------CCCCCCCChhh
Confidence 9887775 677887643 33478899885
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.7e-40 Score=354.01 Aligned_cols=298 Identities=27% Similarity=0.283 Sum_probs=217.7
Q ss_pred ccccc-CCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCC
Q 004077 132 DLLSK-ARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNAT 210 (775)
Q Consensus 132 ~~~~~-~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 210 (775)
.+|.. |++|+||+|||||||||++||+|.... .| ..++...+.+..
T Consensus 12 ~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~---------------~~~~~~~~~~~~------------ 58 (318)
T d1wmda2 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AF---------------RGKITALYALGR------------ 58 (318)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TT---------------TTCEEEEEETTT------------
T ss_pred hHHHccCccccCeEEEEEcCCcCCCCcccccCc------cc---------------CCcEEeecCCCC------------
Confidence 66775 999999999999999999999996431 11 122333333222
Q ss_pred CCCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHH
Q 004077 211 EDDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDA 290 (775)
Q Consensus 211 ~~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a 290 (775)
...+.|..||||||||||+|+.. ...||||+|+|+.+|++...... ......+..+++++
T Consensus 59 --~~~~~d~~gHGT~vAgiiag~~~------------~~~GvAp~a~l~~~~v~~~~~~~------~~~~~~~~~~~~~~ 118 (318)
T d1wmda2 59 --TNNANDTNGHGTHVAGSVLGNGS------------TNKGMAPQANLVFQSIMDSGGGL------GGLPSNLQTLFSQA 118 (318)
T ss_dssp --TTCCCCSSSHHHHHHHHHHCCSS------------SSCCSSTTSEEEEEECCCTTSSC------TTSCSSHHHHHHHH
T ss_pred --CCCCCCCCCCCccceeecccccc------------ccchhhhcccceeeeeeeecccc------cccchhhHHHHHHH
Confidence 12456789999999999998731 13599999999999999865211 23455678899999
Q ss_pred HhCCceEEEEccCCCCCCCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCCC--CCCceEEecccccccccccceEe
Q 004077 291 IRDGVHVLSISIGTNQPFAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLSN--LAPWLITVGAGSLDRDFVGPVVL 368 (775)
Q Consensus 291 ~~~gvdVIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~~p~vitVgAs~~~~~~~~~~~~ 368 (775)
...+++|+|+|||.. ...........+...+.+.++++|+||||.|........ ..++++++.+..........
T Consensus 119 ~~~~~~i~~~S~g~~-~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 194 (318)
T d1wmda2 119 YSAGARIHTNSWGAA-VNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS--- 194 (318)
T ss_dssp HHTTCSEEEECCCBC-CTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG---
T ss_pred HhcCCceeecccccc-cccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccccc---
Confidence 999999999999984 333344555556667789999999999999977665543 34677777664322100000
Q ss_pred CCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhHhhhcCceEE
Q 004077 369 GTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGL 448 (775)
Q Consensus 369 ~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~ 448 (775)
T Consensus 195 -------------------------------------------------------------------------------- 194 (318)
T d1wmda2 195 -------------------------------------------------------------------------------- 194 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCCCCCCCCCCc
Q 004077 449 ILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNALDPYILKPD 528 (775)
Q Consensus 449 i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~d~~~KPD 528 (775)
.......+..||++||.. +...|||
T Consensus 195 -----------------------------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~ 219 (318)
T d1wmda2 195 -----------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPD 219 (318)
T ss_dssp -----------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCC
T ss_pred -----------------------------------------------------ccccccccccccccCCCc--CCCcccc
Confidence 001134677899999987 4779999
Q ss_pred eeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhC-----CCCCHHHHHHHHHhcccccCC
Q 004077 529 ITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIH-----PDWSSAAIRSALMTTAWMKNN 603 (775)
Q Consensus 529 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P~~s~~~ik~~L~~TA~~~~~ 603 (775)
+.|||.+|+++......... ........|..++|||||||+|||++|||+|++ +.+++.+||++|++||++...
T Consensus 220 ~~a~G~~i~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~ 298 (318)
T d1wmda2 220 VMAPGTFILSARSSLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL 298 (318)
T ss_dssp EEEECSSEEEECCTTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS
T ss_pred eeecCceEEeccccccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC
Confidence 99999999998766332111 111223568889999999999999999999975 468899999999999987653
Q ss_pred CCCcccCCCCCCCCCCccceeccCccccCC
Q 004077 604 KALPITNADGSIATPFSFGSGHFRPTKAAD 633 (775)
Q Consensus 604 ~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 633 (775)
..++..||||+||+.+||+
T Consensus 299 -----------~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 299 -----------GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp -----------CSSCTTTTTCBCCHHHHHT
T ss_pred -----------CCCCCCeeeceecHHHHhC
Confidence 2467789999999999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-39 Score=346.01 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=190.5
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|.++-. .+..| .+.+... ...
T Consensus 28 ~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~------------~~~~~-------------~~~~~~~-------~~~ 75 (334)
T d1p8ja2 28 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD------------PGASF-------------DVNDQDP-------DPQ 75 (334)
T ss_dssp HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC------------GGGCE-------------ETTTTBS-------CCC
T ss_pred HHHhcCCCCCCeEEEEEccCCCCCChhHhhccc------------cCCCc-------------cccCCCC-------ccc
Confidence 799999999999999999999999999974310 00000 1111000 001
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......|..||||||||||+|...++. ...|+||+++++.+|++.. ...+.+.++.+++
T Consensus 76 ~~~~~~~~~gHGT~vAgiia~~~~n~~---------~~~g~a~~a~~~~~~~~~~------------~~~~~~~~~~~~~ 134 (334)
T d1p8ja2 76 PRYTQMNDNRHGTRCAGEVAAVANNGV---------CGVGVAYNARIGGVRMLDG------------EVTDAVEARSLGL 134 (334)
T ss_dssp CCCCTTCTTCHHHHHHHHHHCCSSSSS---------SCCCTTTTSEEEEEECSSS------------CCCHHHHHHHHTS
T ss_pred cccccccCccchhhhhhhhhhcccccc---------ccccccccccccchhhccc------------cccchHHHHHHHh
Confidence 123455789999999999998753322 2459999999999998753 3345566777766
Q ss_pred h-CCceEEEEccCCCCCCCCCcc--------HHHHHHHHHHcCCcEEEEecCCCCCCCCCCCC----CCCceEEeccccc
Q 004077 292 R-DGVHVLSISIGTNQPFAFNRD--------GIAIGALNAVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGAGSL 358 (775)
Q Consensus 292 ~-~gvdVIn~SlG~~~~~~~~~~--------~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgAs~~ 358 (775)
+ ++++++|||||.......... .+..+...+..+|+++|+||||++........ ..+.+++|++++.
T Consensus 135 ~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~ 214 (334)
T d1p8ja2 135 NPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ 214 (334)
T ss_dssp CTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT
T ss_pred hhcCCcEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc
Confidence 5 689999999998432222211 12233445667899999999998754322211 1234455554321
Q ss_pred ccccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhh
Q 004077 359 DRDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGM 438 (775)
Q Consensus 359 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~ 438 (775)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCC
Q 004077 439 EVKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPN 518 (775)
Q Consensus 439 ~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~ 518 (775)
.+..+.||++|+.
T Consensus 215 -------------------------------------------------------------------~g~~~~~s~~~~~ 227 (334)
T d1p8ja2 215 -------------------------------------------------------------------FGNVPWYSEACSS 227 (334)
T ss_dssp -------------------------------------------------------------------TSCCCTTCCBCTT
T ss_pred -------------------------------------------------------------------CCceeeecccCCc
Confidence 2345566666665
Q ss_pred CCCCCCCCCceeeCCC-----cEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHH
Q 004077 519 ALDPYILKPDITAPGL-----NILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSA 593 (775)
Q Consensus 519 ~~~d~~~KPDI~APG~-----~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~ 593 (775)
.. .+..+||. .+.+.... ..|..++|||||||+|||++|||+|++|+|+++|||++
T Consensus 228 ~~------~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~ 288 (334)
T d1p8ja2 228 TL------ATTYSSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHL 288 (334)
T ss_dssp CC------EEEECCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHH
T ss_pred cc------cccccccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 41 13344432 23333322 67889999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCcccCCCCCCCCCCccceeccCccccCCC
Q 004077 594 LMTTAWMKNNKALPITNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 594 L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
|++||++....+..+.........+..||+|+||+++||+.
T Consensus 289 L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 289 VVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp HHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred HHHhCcccCCCCccccccCCCcccCCCCcceEeCHHHHHHH
Confidence 99999987654333322222333456799999999999873
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-38 Score=344.75 Aligned_cols=285 Identities=16% Similarity=0.119 Sum_probs=201.1
Q ss_pred cccccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCC
Q 004077 132 DLLSKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATE 211 (775)
Q Consensus 132 ~~~~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 211 (775)
.+|..+++|+||+|||||||||++||+|+++-. ..+.++|.+.. .
T Consensus 37 ~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-------------------------~~~~~~~~~~~----------~ 81 (339)
T d2id4a2 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNT----------N 81 (339)
T ss_dssp HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTB----------S
T ss_pred HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-------------------------cccccccccCC----------C
Confidence 899999999999999999999999999975310 00122333221 1
Q ss_pred CCCCCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH
Q 004077 212 DDRSPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI 291 (775)
Q Consensus 212 ~~~~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~ 291 (775)
......++.+|||||||+|+|.... ...+.||||+|+|+.++++... ....++..++.+++
T Consensus 82 ~~~~~~~~~~HGT~vag~iaa~~~~---------~~~~~Gvap~a~~~~~~~~~~~----------~~~~~~~~~~~~~~ 142 (339)
T d2id4a2 82 LPKPRLSDDYHGTRCAGEIAAKKGN---------NFCGVGVGYNAKISGIRILSGD----------ITTEDEAASLIYGL 142 (339)
T ss_dssp CCCCCSTTTTHHHHHHHHHHCCSSS---------SSSCCCTTTTSEEEEEECTTSC----------CCHHHHHHHTTTTT
T ss_pred ccCCCcccccccceeeecccccccc---------cccccccccccccceEEEeecc----------ccchHHHHHHHHHH
Confidence 1223456789999999999987432 2235699999999999997643 57778888888876
Q ss_pred hCCceEEEEccCCCCCCCCC---ccH-----HHHHHHHHHcCCcEEEEecCCCCCCCCCCCC----CCCceEEecccccc
Q 004077 292 RDGVHVLSISIGTNQPFAFN---RDG-----IAIGALNAVKHNILVACSAGNSGPAPSSLSN----LAPWLITVGAGSLD 359 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~~~---~~~-----~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~~p~vitVgAs~~~ 359 (775)
.. .+|+|+|+|........ ... ...+...+..+|+++|+||||++........ ..+.+++|++++
T Consensus 143 ~~-~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (339)
T d2id4a2 143 DV-NDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID-- 219 (339)
T ss_dssp TT-CSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC--
T ss_pred hh-CCEEeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc--
Confidence 65 48999999974321111 111 2233345667899999999998754322211 123334444321
Q ss_pred cccccceEeCCCcEEeeeeeccCCCCcceeeEEecccccCCcCCCCCCCcCCCCCCCCceeceEEEEecCCcchhhhhhH
Q 004077 360 RDFVGPVVLGTGMEIIGKTVTPYNLKKMHPLVYAADVVVPGVHQNETNQCLPGSLTPEKVKGKIVLCMRGSGFKLSKGME 439 (775)
Q Consensus 360 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~k~~~ 439 (775)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCceEEEEecCCCCCCccccCCccccEEEEeHHHHHHHHHHHhcCCCceEEEEeceEEeecCCCCccccccCCCCCC
Q 004077 440 VKRAGGVGLILGNSPANGNEYSYDAHYLPATAVLYDDAIKIHEYIKSTNNPTAIIKQARTVLHTQPAPFMANFTSRGPNA 519 (775)
Q Consensus 440 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 519 (775)
..+..+.||++|+..
T Consensus 220 -----------------------------------------------------------------~~g~~~~~s~~~~~~ 234 (339)
T d2id4a2 220 -----------------------------------------------------------------HKDLHPPYSEGCSAV 234 (339)
T ss_dssp -----------------------------------------------------------------TTSCCCTTCCCCTTE
T ss_pred -----------------------------------------------------------------ccccccccccccCcc
Confidence 134566777777653
Q ss_pred CCCCCCCCceeeCCCcEEEcccCCCCCCcccCCccccccEEeeccCchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 004077 520 LDPYILKPDITAPGLNILAAWSEASSPSKLAFDKRIVKYTIFSGTSMSCPHVAAAAALLKAIHPDWSSAAIRSALMTTAW 599 (775)
Q Consensus 520 ~~d~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~s~~~ik~~L~~TA~ 599 (775)
...++..+||..|.++.... ..|..++|||||||||||++|||+|++|+|++.+||.+|+.||.
T Consensus 235 ----~~~~~~~~~g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~ 298 (339)
T d2id4a2 235 ----MAVTYSSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAV 298 (339)
T ss_dssp ----EEEEECSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCB
T ss_pred ----ceeeeeeccccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCc
Confidence 34568888999998876542 46888999999999999999999999999999999999999999
Q ss_pred ccCCCCCcc-cCCCCCCCCCCccceeccCccccCCC
Q 004077 600 MKNNKALPI-TNADGSIATPFSFGSGHFRPTKAADP 634 (775)
Q Consensus 600 ~~~~~g~~~-~~~~~~~~~~~~~G~G~vn~~~Al~~ 634 (775)
+++...... .........+..||||+||+.+||+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 299 GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp CCTTCGGGCCEECSSSSEEBTTTBTCBCCHHHHHHH
T ss_pred ccCCCCCccccccCCCCCcCCCccchhhCHHHHHHH
Confidence 876543211 11112234566799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=9.4e-31 Score=283.59 Aligned_cols=164 Identities=20% Similarity=0.230 Sum_probs=105.8
Q ss_pred ccCCCCCceEEEEeecCCCCCCCCCCCCCCCCCCCCccceeecCCccCcccccceeeeeeecccccccccCCCCCCCCCC
Q 004077 135 SKARYGQDVIVGLVDNGVWPESKSFSDEGMGPVPKSWKGICQTGVAFNSSLCNKKIIGARYYLKGFEQLYGPLNATEDDR 214 (775)
Q Consensus 135 ~~~~~G~GV~VgVIDtGid~~Hp~f~d~~~~~~~~~~~g~~~~g~~~~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 214 (775)
..+++|+||+|||||||||++||+|.+. |+. + ... ....
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~---------------~~~-----------~~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------L---------------GVS-----------APQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------T---------------TCC-----------CCCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------c---------------CCC-----------CCCC
Confidence 4689999999999999999999999531 000 0 000 0011
Q ss_pred CCCCCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHH---
Q 004077 215 SPRDMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAI--- 291 (775)
Q Consensus 215 ~~~D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~--- 291 (775)
.+.|..+|+||+++++++...+. ......+.||||+|+|+.+|++... ..++.++++++
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~-----~~d~~~~~GvAp~A~i~~~~~~~~~-------------~~~~~~i~~~~~~~ 118 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEV-----ELDIEVAGALAPGAKIAVYFAPNTD-------------AGFLNAITTAVHDP 118 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHH-----HHHHHHHHHHSTTSEEEEEECCSSH-------------HHHHHHHHHHHHCT
T ss_pred ceeCCCCCCCCCCCccccccccc-----cCCcccceeecccCeEEEEecccCC-------------CchHHHHHHHHHhh
Confidence 23456788999888877542110 0011235799999999999996532 33445555554
Q ss_pred hCCceEEEEccCCCCCCC--CCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCCC--------CCCCceEEecccc
Q 004077 292 RDGVHVLSISIGTNQPFA--FNRDGIAIGALNAVKHNILVACSAGNSGPAPSSLS--------NLAPWLITVGAGS 357 (775)
Q Consensus 292 ~~gvdVIn~SlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--------~~~p~vitVgAs~ 357 (775)
+++++|||+|||...... .....+......+..+|+++|+|+||+|....... ...+++++|++..
T Consensus 119 ~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 194 (357)
T d1t1ga_ 119 THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTR 194 (357)
T ss_dssp TTCCSEEEECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEE
T ss_pred hcCCeEEecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeec
Confidence 469999999999832111 11234555666778899999999999985432211 2346778887654
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=1e-27 Score=261.09 Aligned_cols=123 Identities=14% Similarity=0.077 Sum_probs=92.1
Q ss_pred CCCCccccchhhhcccCCCCCCccCCcCCcceeeecCCCeEEEEEeecCCCCCCccCCCCCCHHHHHHHHHHHHh-CCce
Q 004077 218 DMDGHGTHTASTVAGRRVPNASAFGGFAEGTASGGAPLARLAIYKACWATPKASKAAGNTCFEADMLAAIDDAIR-DGVH 296 (775)
Q Consensus 218 D~~gHGTHVAGiiaG~~~~~~~~~gg~~~g~~~GVAP~A~L~~~kv~~~~~~g~~~~~~~~~~~~i~~ai~~a~~-~gvd 296 (775)
+..+||||+++++.+.. ....+.||||+|+|+.+|++.+. + .....+++++|++|++ ++++
T Consensus 66 ~~~~~~~~~~~~~e~~l----------d~~~~~gvAp~a~~~~~~~~~~~--~------~~~~~~~~~a~~~a~~~~~~~ 127 (369)
T d1ga6a_ 66 SNGDYSDDQQGQGEWDL----------DSQSIVGSAGGAVQQLLFYMADQ--S------ASGNTGLTQAFNQAVSDNVAK 127 (369)
T ss_dssp TTSCCCBCHHHHHHHHH----------HHHHHHHHTTSCEEEEEEEEECT--T------SSTTHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCcceeecc----------ccccccccccCceEEEEEEeCCC--C------CcchHHHHHHHHHHHHcCCCc
Confidence 45689999999987642 11235799999999999999876 3 4678899999999986 5799
Q ss_pred EEEEccCCCCC---CCCCccHHHHHHHHHHcCCcEEEEecCCCCCCCCCC-------------CCCCCceEEeccccc
Q 004077 297 VLSISIGTNQP---FAFNRDGIAIGALNAVKHNILVACSAGNSGPAPSSL-------------SNLAPWLITVGAGSL 358 (775)
Q Consensus 297 VIn~SlG~~~~---~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~-------------~~~~p~vitVgAs~~ 358 (775)
|||+|||.... .....+.+..++.++.++||+||+||||+|...... ....+++++|+++..
T Consensus 128 Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 128 VINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp EEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred eeeccccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 99999997321 123345566677788899999999999998643211 123478899987643
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.38 E-value=2.7e-07 Score=72.83 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=52.0
Q ss_pred CceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeeceeEeEEEEEcCHHHHHhhcc--ccceEEecCC
Q 004077 23 KQVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYKHSINGFSAVLTPDEAARLSE--EVVSVYPSHP 100 (775)
Q Consensus 23 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~~~~ng~~~~l~~~~~~~L~~--~V~~V~~~~~ 100 (775)
+++|||.||++... .....+.+++.+. ..++.+.|+ .||||+++|++++++.|++ +|.+||+|+
T Consensus 1 e~~YIV~fK~~~~~-----~~~~~~~~~v~~~-------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~- 66 (71)
T d1scjb_ 1 EKKYIVGFKQTMSA-----MSSAKKKDVISQK-------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDH- 66 (71)
T ss_dssp CEEEEEEECSSSSC-----CSHHHHHHHHHTT-------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECC-
T ss_pred CCcEEEEECCCCCh-----HHHHHHHHHHHHc-------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCc-
Confidence 47899999998732 2233344444432 347999998 5999999999999999999 999999999
Q ss_pred Cccc
Q 004077 101 EKYS 104 (775)
Q Consensus 101 ~~~~ 104 (775)
.++
T Consensus 67 -v~~ 69 (71)
T d1scjb_ 67 -IAH 69 (71)
T ss_dssp -EEE
T ss_pred -EEE
Confidence 654
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.27 E-value=7.6e-07 Score=70.42 Aligned_cols=64 Identities=17% Similarity=0.320 Sum_probs=49.5
Q ss_pred ceEEEEecCCCCCCcccchhhhhHHHHHHHhhCCchhhhcceEEeec-eeEeEEEEEcCHHHHHhhcc--c--cceEEec
Q 004077 24 QVYIVHFGGSDNGEKALHEIQETHHSYLLSVKDNEEEARASHLYSYK-HSINGFSAVLTPDEAARLSE--E--VVSVYPS 98 (775)
Q Consensus 24 ~~yiV~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~y~-~~~ng~~~~l~~~~~~~L~~--~--V~~V~~~ 98 (775)
.+|||.||++.. ....+.+..++.... ..+.+.|. +.|+||+++++++.++.|++ + |.+||+|
T Consensus 3 G~YIVvlK~~~~-----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D 70 (72)
T d1v5ib1 3 GKFIVIFKNDVS-----EDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (72)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ccEEEEECCCCC-----HHHHHHHHHHHHhcC-------CceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCC
Confidence 689999999772 334455555555443 35677777 68999999999999999986 4 9999998
Q ss_pred C
Q 004077 99 H 99 (775)
Q Consensus 99 ~ 99 (775)
+
T Consensus 71 ~ 71 (72)
T d1v5ib1 71 H 71 (72)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.75 E-value=0.00059 Score=63.50 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=55.7
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCCCCCCcc-------------cc--------------------
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSPANGNEY-------------SY-------------------- 462 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~-------------~~-------------------- 462 (775)
..+++|||+|+++|.+.+.+|..+|++.||.|+|+|.+..+.... ..
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~ 137 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRS 137 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCC
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCcccc
Confidence 357899999999999999999999999999999999874421100 00
Q ss_pred -CCccccEEEEeHHHHHHHHHHHh
Q 004077 463 -DAHYLPATAVLYDDAIKIHEYIK 485 (775)
Q Consensus 463 -~~~~~p~~~i~~~~g~~l~~~~~ 485 (775)
....||+.-|+..+++.|++.+.
T Consensus 138 ~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 138 SGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TTSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCCcCCeeeCCHHHHHHHHHHcC
Confidence 11358999999999999988653
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.15 E-value=0.03 Score=46.44 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=62.9
Q ss_pred CCCCeeEeecCCceEEEEEEEEecCCCCeE-EEEEeeCCCCcEEEEecceEEEccCCcEEEEEEEEEECcccccccCCCc
Q 004077 673 LNYPSIAIPNLNGTVIVKRTVTNVGGSKSV-YFFSAKPPMGVSVKANPSILFFDHIGQKKSFTITVRLGSETTRQGLTKQ 751 (775)
Q Consensus 673 ln~ps~~~~~~~~~~t~~~tv~n~~~~~~t-y~~~~~~~~g~~~~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 751 (775)
+..|++.+.- ..+.+++++|+|.|....+ -++.+..|.|=.+... ...+ ++|++++++++++.+ .....+.
T Consensus 6 ~t~p~~~v~p-G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~--~~~L-~pG~s~~~~~~Vt~p----~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEP-GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGS--VEPL-MPGRQAKGQVTITVP----AGTTPGR 77 (103)
T ss_dssp EECCCEEECT-TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEE--ECCB-CTTCEEEEEEEEECC----TTCCCEE
T ss_pred ccCcceeeCC-CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCc--ceee-CCCCcEEEEEEEECC----CCCCCce
Confidence 4557776653 4578999999999986644 4678888999887544 4444 689999999999996 3455666
Q ss_pred eEEEEEEEECCccEEEeEEEEE
Q 004077 752 YVFGWYRWTDGLHLVRSPMAVS 773 (775)
Q Consensus 752 ~~~g~~~~~~~~~~v~~P~~~~ 773 (775)
|. =.+..+.+.......|-+.
T Consensus 78 Y~-i~~~a~~~~~~~s~t~tvt 98 (103)
T d1w8oa1 78 YR-VGATLRTSAGNASTTFTVT 98 (103)
T ss_dssp EE-EEEEEEETTEEEEEEEEEE
T ss_pred EE-EEEEEEeCCcceEEEEEEE
Confidence 64 3455555544444444443
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0081 Score=57.38 Aligned_cols=39 Identities=33% Similarity=0.447 Sum_probs=36.6
Q ss_pred CCceeceEEEEecCCcchhhhhhHhhhcCceEEEEecCC
Q 004077 416 PEKVKGKIVLCMRGSGFKLSKGMEVKRAGGVGLILGNSP 454 (775)
Q Consensus 416 ~~~~~gkivl~~~g~~~~~~k~~~~~~~Ga~g~i~~n~~ 454 (775)
..+++|||+|+++|.+.+.+|.++|++.||.|+|+|++.
T Consensus 76 gi~~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysDP 114 (233)
T d3bi1a2 76 KINCSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSDP 114 (233)
T ss_dssp CCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCH
T ss_pred CCcccceEEEEeCCCCchhHHHHHHHHcCceEEEEecCh
Confidence 458999999999999999999999999999999999973
|