Citrus Sinensis ID: 004132

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770--
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
cccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEEEccccccccHHHHHcccccccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEcccccEEEEEEcccccccccccccccHHHHHHHHHcccccc
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHcEEEEEEcccccEEEHHHHHHHHHHHcHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcEcccccHHHccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccEEEEEEEEEEccEEEEEEEEEccccccccccEEEEEccccccccccccccccccccccEEEEEEccccccccccccccccEEEEEcccccEEEEEEEccHHHHEcccccccHHHHHEEHHcEEEcc
mtvgkdvsSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnpLIRALAVRTMGCIRVDKITEYLcdplqrclkdddpyvRKTAAICVAKLYDINAELVEDRGFLESLKdlisdnnpmVVANAVAALAEIeenssrpifeiTSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERvtprlqhaNCAVVLSAVKMILQQMELITSTDVVRNLCkkmapplvtllsaepeIQYVALRNINLIVQRRPTILAHEIKVFFckyndpiyvkMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESldtldepeaKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLkkptegpqQMIQVVLNNatvetdnpdlrdRAYIYWRLLstdpeaakdvvlaekpvisddsnqldpSLLDELLANIATLssvyhkppeaFVTRVKTtasrtddedypngseqgysdapthvadegaspqtsssnapyaatrqpapppaapvsppvpdllgdligldnsaaivpadqaaaspvpalpvvlpastgqglqigaeltrqdGQVFYSMLFenntqtpldgfmIQFNKNTFglaaggalqvpqlqpgtsgrtllPMVLfqnmsagppssLLQVAVKNnqqpvwyfndkisLHVLFTedgrmergsflevktcsfvta
mtvgkdvsslfTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTfvkdsqdpnPLIRALAVRTMGCIRVDKITEYLCDPlqrclkdddpyVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIvervtprlqhANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEyatevdvdfVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLnnatvetdnpdlRDRAYIYWRLLSTDPEAAKDVVLAEkpvisddsnqLDPSLLDELLANIATLssvyhkppeafVTRVKTtasrtddedypngSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRmergsflevktcsfvta
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDnnpmvvanavaalaeieenSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADellesflesfpeepAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNapyaatrqpapppaapvsppvpDLLGDLIGLDNSAAIVPADQaaaspvpalpvvlpasTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
********SLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPV**********SLLDELLANIATLSSVYHKPPEAFV*******************************************************************LGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNM******SLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSF***
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLA*****************DELLANIATLSSVYHK*********************************************************************************************************A*TGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGL************************LF***SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHV****************************PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
****KDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTR***********************************************************************LDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
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MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFVTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query772 2.2.26 [Sep-21-2011]
O81742893 Beta-adaptin-like protein yes no 0.974 0.842 0.876 0.0
Q9SUS3894 Beta-adaptin-like protein no no 0.975 0.842 0.889 0.0
Q10567949 AP-1 complex subunit beta yes no 0.961 0.781 0.598 0.0
O35643943 AP-1 complex subunit beta yes no 0.980 0.802 0.604 0.0
P62944937 AP-2 complex subunit beta yes no 0.968 0.798 0.591 0.0
P63010937 AP-2 complex subunit beta no no 0.968 0.798 0.591 0.0
P63009937 AP-2 complex subunit beta no no 0.968 0.798 0.591 0.0
Q9DBG3937 AP-2 complex subunit beta no no 0.968 0.798 0.591 0.0
Q08DS7951 AP-1 complex subunit beta no no 0.976 0.792 0.580 0.0
Q54X82 942 AP-1 complex subunit beta yes no 0.711 0.582 0.734 0.0
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function desciption
 Score = 1334 bits (3452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/763 (87%), Positives = 700/763 (91%), Gaps = 11/763 (1%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLE+LKDLISDNNPMVVANAVAALAEI+ENS+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct: 163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct: 223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLE+FPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct: 463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPAAP 600
           VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP   S+   Y      AP     
Sbjct: 583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASP---SATTGYVTKLAAAP----- 634

Query: 601 VSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQV 660
              PVPDLLGDL+G DN AAIVP D+        LPVVLPAS GQGLQI A+LTRQDGQV
Sbjct: 635 --APVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query: 661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 720
           FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct: 692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query: 721 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLE 763
             SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLE
Sbjct: 752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLE 794
Subunit of clathrin-associated adaptor protein complex that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD PE=1 SV=1 Back     alignment and function description
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 Back     alignment and function description
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 Back     alignment and function description
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query772
224074998 904 predicted protein [Populus trichocarpa] 0.987 0.842 0.910 0.0
224053869 904 predicted protein [Populus trichocarpa] 0.987 0.842 0.905 0.0
297742217 920 unnamed protein product [Vitis vinifera] 0.985 0.827 0.905 0.0
225426194 903 PREDICTED: beta-adaptin-like protein C [ 0.985 0.842 0.905 0.0
356497341 891 PREDICTED: beta-adaptin-like protein C-l 0.971 0.841 0.903 0.0
356543841 915 PREDICTED: beta-adaptin-like protein C-l 0.980 0.827 0.895 0.0
356543839 898 PREDICTED: beta-adaptin-like protein C-l 0.980 0.842 0.895 0.0
255564498 903 AP-2 complex subunit beta-1, putative [R 0.981 0.839 0.911 0.0
357474047 896 AP-2 complex subunit beta [Medicago trun 0.977 0.842 0.897 0.0
356539170 898 PREDICTED: beta-adaptin-like protein C-l 0.980 0.842 0.897 0.0
>gi|224074998|ref|XP_002304511.1| predicted protein [Populus trichocarpa] gi|222841943|gb|EEE79490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1408 bits (3644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/764 (91%), Positives = 725/764 (94%), Gaps = 2/764 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct: 43  MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG
Sbjct: 103 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 162

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
           FLESLKDLISDNNPMVVANAVAALAEI++NS RPIFEITSHTLSKLLTALNECTEWGQVF
Sbjct: 163 FLESLKDLISDNNPMVVANAVAALAEIQDNSVRPIFEITSHTLSKLLTALNECTEWGQVF 222

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQME+ITSTDVVRNLCK
Sbjct: 223 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMEIITSTDVVRNLCK 282

Query: 241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
           KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct: 283 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query: 301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
           IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct: 343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query: 361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
           VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct: 403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query: 421 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
           DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNAT+ETDNPDLRD
Sbjct: 463 DELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATMETDNPDLRD 522

Query: 481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
           RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF
Sbjct: 523 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 582

Query: 541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNAPYAATRQPAPPPA-A 599
           VTRVKT A +T+D++Y  GSE GYS++  H AD  ASP TS+SN PYA  RQ AP P+ +
Sbjct: 583 VTRVKTAAQKTEDDEYAEGSEAGYSESSAHTADGAASPPTSASNVPYAGARQAAPAPSTS 642

Query: 600 PVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVVLPASTGQGLQIGAELTRQDGQ 659
           P + P+PDL+GDL+ +DNS A+VP DQ +    P LPV+LPA+TGQGLQI A+L  +DGQ
Sbjct: 643 PPAAPLPDLMGDLLDMDNS-AMVPVDQPSTPASPPLPVLLPAATGQGLQISAQLISRDGQ 701

Query: 660 VFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSA 719
           +FYS+LFENN+Q PLDGFMIQFNKN+FGLAA G LQVPQLQPGTS  TLLP+ LFQNMSA
Sbjct: 702 IFYSLLFENNSQIPLDGFMIQFNKNSFGLAAAGPLQVPQLQPGTSAATLLPVALFQNMSA 761

Query: 720 GPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLE 763
           GPPSSLLQVAVKNNQQPVWYFNDKISLHV FTEDGRMERGSFLE
Sbjct: 762 GPPSSLLQVAVKNNQQPVWYFNDKISLHVFFTEDGRMERGSFLE 805

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224053869|ref|XP_002298020.1| predicted protein [Populus trichocarpa] gi|222845278|gb|EEE82825.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297742217|emb|CBI34366.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426194|ref|XP_002279641.1| PREDICTED: beta-adaptin-like protein C [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497341|ref|XP_003517519.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information
>gi|356543841|ref|XP_003540368.1| PREDICTED: beta-adaptin-like protein C-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356543839|ref|XP_003540367.1| PREDICTED: beta-adaptin-like protein C-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255564498|ref|XP_002523245.1| AP-2 complex subunit beta-1, putative [Ricinus communis] gi|223537541|gb|EEF39166.1| AP-2 complex subunit beta-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357474047|ref|XP_003607308.1| AP-2 complex subunit beta [Medicago truncatula] gi|355508363|gb|AES89505.1| AP-2 complex subunit beta [Medicago truncatula] Back     alignment and taxonomy information
>gi|356539170|ref|XP_003538073.1| PREDICTED: beta-adaptin-like protein C-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query772
TAIR|locus:2117924893 AT4G23460 [Arabidopsis thalian 0.974 0.842 0.816 0.0
UNIPROTKB|F1NCI1 922 AP1B1 "Uncharacterized protein 0.699 0.585 0.710 1.4e-227
UNIPROTKB|F1NCR9881 AP1B1 "Uncharacterized protein 0.699 0.612 0.710 1.4e-227
MGI|MGI:1096368 943 Ap1b1 "adaptor protein complex 0.699 0.572 0.710 3.7e-227
UNIPROTKB|E2RRJ6 939 AP1B1 "Uncharacterized protein 0.746 0.613 0.676 3.7e-227
UNIPROTKB|F1RFI2 947 AP1B1 "Uncharacterized protein 0.699 0.570 0.710 4.7e-227
UNIPROTKB|I3LV02 949 AP1B1 "Uncharacterized protein 0.699 0.569 0.710 4.7e-227
ZFIN|ZDB-GENE-061025-1 947 ap1b1 "adaptor-related protein 0.738 0.601 0.676 6e-227
UNIPROTKB|Q10567 949 AP1B1 "AP-1 complex subunit be 0.699 0.569 0.710 6e-227
UNIPROTKB|F1MIF2 946 AP1B1 "Uncharacterized protein 0.699 0.570 0.709 6e-227
TAIR|locus:2117924 AT4G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3077 (1088.2 bits), Expect = 0., P = 0.
 Identities = 623/763 (81%), Positives = 653/763 (85%)

Query:     1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
             MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP
Sbjct:    43 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 102

Query:    61 LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
             LIRALAVRTMGCIRVDKITEYLCDPLQ+CLKDDDPYVRKTAAICVAKL+DINAELVEDRG
Sbjct:   103 LIRALAVRTMGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRG 162

Query:   121 FLESLKDLISDXXXXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
             FLE+LKDLISD                   S+ PIFEI S  L+KLLTALNECTEWGQVF
Sbjct:   163 FLEALKDLISDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVF 222

Query:   181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
             ILDALSRYKA+D REAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDV+RNLCK
Sbjct:   223 ILDALSRYKASDPREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVIRNLCK 282

Query:   241 KMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 300
             KMAPPLVTLLSAEPEIQYVALRNINLIVQ+RPTILAHEIKVFFCKYNDPIYVKMEKLEIM
Sbjct:   283 KMAPPLVTLLSAEPEIQYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIM 342

Query:   301 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 360
             IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK
Sbjct:   343 IKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIK 402

Query:   361 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 420
             VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA
Sbjct:   403 VNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNA 462

Query:   421 DXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 480
             D              AQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD
Sbjct:   463 DELLESFLENFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRD 522

Query:   481 RAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAF 540
             RAYIYWRLLSTDPEAAKDVVLAEKPVI+DDSNQLDPSLLDELLANI+TLSSVYHKPPEAF
Sbjct:   523 RAYIYWRLLSTDPEAAKDVVLAEKPVITDDSNQLDPSLLDELLANISTLSSVYHKPPEAF 582

Query:   541 VTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXX 600
             VTR+KTT  +T+DEDY  GSE GY +A  +  D  ASP  ++                  
Sbjct:   583 VTRLKTTVQKTEDEDYVEGSETGYPEASGNPVDGAASPSATTG----------YVTKLAA 632

Query:   601 XXXXXXDLLGDLIGLDNSAAIVPADQXXXXXXXXXXXXXXXXTGQGLQIGAELTRQDGQV 660
                   DLLGDL+G DN AAIVP D+                 GQGLQI A+LTRQDGQV
Sbjct:   633 APAPVPDLLGDLMGSDN-AAIVPVDEPTTPSGRPLPVVLPASKGQGLQISAQLTRQDGQV 691

Query:   661 FYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQVPQLQPGTSGRTLLPMVLFQNMSAG 720
             FYSML ENN+Q+ LDGFMIQFNKN+FGLAA G+LQVP LQPG S RT++PMVL QNMS G
Sbjct:   692 FYSMLLENNSQSLLDGFMIQFNKNSFGLAAVGSLQVPPLQPGASARTMMPMVLSQNMSTG 751

Query:   721 PPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLE 763
               SS+LQVAVKNNQQPVWYF DKI L+ LF+EDGRMERG+FLE
Sbjct:   752 STSSVLQVAVKNNQQPVWYFEDKIVLNALFSEDGRMERGTFLE 794
GO:0005634 "nucleus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0015031 "protein transport" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030117 "membrane coat" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
GO:0030276 "clathrin binding" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
UNIPROTKB|F1NCI1 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NCR9 AP1B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1096368 Ap1b1 "adaptor protein complex AP-1, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RRJ6 AP1B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFI2 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LV02 AP1B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061025-1 ap1b1 "adaptor-related protein complex 1, beta 1 subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q10567 AP1B1 "AP-1 complex subunit beta-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIF2 AP1B1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81742APBLC_ARATHNo assigned EC number0.87680.97400.8421yesno
O35643AP1B1_MOUSENo assigned EC number0.60440.98050.8027yesno
P62944AP2B1_RATNo assigned EC number0.59110.96890.7982yesno
Q54X82AP1B_DICDINo assigned EC number0.73450.71110.5828yesno
Q10567AP1B1_HUMANNo assigned EC number0.59850.96110.7818yesno
Q9SUS3APBLB_ARATHNo assigned EC number0.88990.97530.8422nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query772
pfam01602522 pfam01602, Adaptin_N, Adaptin N terminal region 0.0
PTZ00429746 PTZ00429, PTZ00429, beta-adaptin; Provisional 1e-150
COG5096757 COG5096, COG5096, Vesicle coat complex, various su 1e-147
pfam12717171 pfam12717, Cnd1, non-SMC mitotic condensation comp 5e-43
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 2e-13
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 4e-12
COG5240898 COG5240, SEC21, Vesicle coat complex COPI, gamma s 1e-10
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-08
pfam1364688 pfam13646, HEAT_2, HEAT repeats 1e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 3e-04
COG1413335 COG1413, COG1413, FOG: HEAT repeat [Energy product 9e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.004
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region Back     alignment and domain information 
 Score =  552 bits (1425), Expect = 0.0
 Identities = 205/498 (41%), Positives = 301/498 (60%), Gaps = 13/498 (2%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           + +G+D+S LF +VV  + + +  LK+L YLYL   A+  PDLAIL  N+  KD Q PNP
Sbjct: 33  IMLGEDISFLFFEVVKLVASNDFTLKRLGYLYLKLLAEESPDLAILVTNSIKKDLQSPNP 92

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIR LA+RT+ CIRV ++   L   +++ L D DPYVRK AA+ + KLY  + +LV D  
Sbjct: 93  LIRGLALRTLSCIRVPELARDLAPDIKKLLVDRDPYVRKKAALAILKLYRKDPDLVRD-F 151

Query: 121 FLESLKDLISDNNPMVVANAVAALAEIEENSSRPIFEITSHTLSKLLTALNECTEWGQVF 180
            +  LK+L+SD +P VV+ AVA L EI +N    + ++    + +L   L  C  W QV 
Sbjct: 152 LVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRLCNLLTVCNPWLQVK 211

Query: 181 ILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLCK 240
           IL  L+RY   D RE + ++E +   LQ++N AV+  AVK I   + L         L  
Sbjct: 212 ILRLLTRYAPQDPREPKELLEDILNLLQNSNNAVLYEAVKTI---IHLDPEP----ELIV 264

Query: 241 KMAPPLVTLLSAEPE-IQYVALRNINLIVQRRP-TILAHEIKVFFCKYNDPIYVKMEKLE 298
                L  LLS+  E ++YVALRN+N I+++ P  +   ++ +F  K +D I +++  L+
Sbjct: 265 LAVNALGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLKTDDDISIRLRALD 324

Query: 299 IMIKLASDRNIDQVLLEFKEYATEV-DVDFVRKAVRAIGRCAIKLERAAERCISVLLELI 357
           ++ KL  + N+ +++ E  +Y +E+ D +F  K V+AIGR A K    AE CI VLLEL+
Sbjct: 325 LLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPTDAEWCIDVLLELL 384

Query: 358 KIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERI 417
            +  +YVV E + VI+DI R+YP   E I+  LCE L+ ++ PEA+A+ +WI+GEY E I
Sbjct: 385 SLAGSYVVDEIVEVIRDIIRKYPELREYILEHLCELLEDIESPEARAAALWILGEYGELI 444

Query: 418 -DNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQ-MIQVVLNNATVETDN 475
            ++  +LL S LE F  E  +V+L LLTA VKL L  P E  Q  ++QVVL+ AT ++ +
Sbjct: 445 PNSPSDLLRSILEVFVLESLKVRLALLTALVKLSLTFPDEEVQNLIVQVVLSLATQDSSD 504

Query: 476 PDLRDRAYIYWRLLSTDP 493
            +LRDRA  Y RLLS   
Sbjct: 505 LELRDRAVEYLRLLSLAD 522

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional Back     alignment and domain information
>gnl|CDD|227427 COG5096, COG5096, Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|221731 pfam12717, Cnd1, non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|227565 COG5240, SEC21, Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 772
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 100.0
PTZ00429746 beta-adaptin; Provisional 100.0
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 100.0
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 100.0
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 100.0
COG5096757 Vesicle coat complex, various subunits [Intracellu 100.0
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 100.0
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 100.0
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 100.0
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 100.0
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.45
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.31
PRK09687280 putative lyase; Provisional 99.25
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.24
PTZ00429746 beta-adaptin; Provisional 99.2
PRK09687280 putative lyase; Provisional 99.17
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.14
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 99.08
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.02
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 99.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.9
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.86
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.85
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.83
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 98.83
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.77
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.73
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.71
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.7
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 98.65
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 98.53
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.49
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 98.43
PF14764459 SPG48: AP-5 complex subunit, vesicle trafficking 98.43
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.42
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 98.3
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 98.22
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 98.21
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.1
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.08
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 98.07
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.0
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.98
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 97.97
KOG2259823 consensus Uncharacterized conserved protein [Funct 97.96
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.94
TIGR02270410 conserved hypothetical protein. Members are found 97.94
PF05804708 KAP: Kinesin-associated protein (KAP) 97.94
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.92
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 97.85
KOG18241233 consensus TATA-binding protein-interacting protein 97.82
KOG18241233 consensus TATA-binding protein-interacting protein 97.81
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.77
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.77
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.7
TIGR02270410 conserved hypothetical protein. Members are found 97.69
PF05804708 KAP: Kinesin-associated protein (KAP) 97.69
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.62
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 97.61
KOG1242569 consensus Protein containing adaptin N-terminal re 97.58
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.55
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 97.55
KOG04141251 consensus Chromosome condensation complex Condensi 97.52
KOG0212675 consensus Uncharacterized conserved protein [Funct 97.48
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.47
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.47
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.44
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.41
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 97.4
KOG1242569 consensus Protein containing adaptin N-terminal re 97.3
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.23
KOG09151702 consensus Uncharacterized conserved protein [Funct 97.22
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.21
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.18
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.15
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 97.11
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.1
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 97.09
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 97.05
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 97.02
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 96.88
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 96.82
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 96.72
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.7
COG50981128 Chromosome condensation complex Condensin, subunit 96.68
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.66
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 96.59
COG50981128 Chromosome condensation complex Condensin, subunit 96.55
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.47
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.39
KOG4224550 consensus Armadillo repeat protein VAC8 required f 96.26
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.25
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 96.25
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 96.23
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 96.2
KOG22741005 consensus Predicted importin 9 [Intracellular traf 95.97
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.94
KOG1820815 consensus Microtubule-associated protein [Cytoskel 95.94
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.92
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 95.79
KOG4413524 consensus 26S proteasome regulatory complex, subun 95.79
KOG12481176 consensus Uncharacterized conserved protein [Funct 95.76
KOG09151702 consensus Uncharacterized conserved protein [Funct 95.76
KOG0413 1529 consensus Uncharacterized conserved protein relate 95.67
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 95.6
KOG15171387 consensus Guanine nucleotide binding protein MIP1 95.59
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 95.46
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.39
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 95.24
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 95.13
COG5218885 YCG1 Chromosome condensation complex Condensin, su 94.99
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.67
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 94.66
KOG19431133 consensus Beta-tubulin folding cofactor D [Posttra 94.58
KOG2213460 consensus Apoptosis inhibitor 5/fibroblast growth 94.55
KOG4413524 consensus 26S proteasome regulatory complex, subun 94.46
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.44
KOG0567289 consensus HEAT repeat-containing protein [General 94.37
smart00638574 LPD_N Lipoprotein N-terminal Domain. 94.36
KOG2025 892 consensus Chromosome condensation complex Condensi 94.29
KOG0567289 consensus HEAT repeat-containing protein [General 94.2
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 93.96
KOG12481176 consensus Uncharacterized conserved protein [Funct 93.91
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 93.5
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.08
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 92.95
KOG19491005 consensus Uncharacterized conserved protein [Funct 92.93
COG5656970 SXM1 Importin, protein involved in nuclear import 92.6
KOG2025892 consensus Chromosome condensation complex Condensi 92.55
smart00638574 LPD_N Lipoprotein N-terminal Domain. 92.5
PF05004309 IFRD: Interferon-related developmental regulator ( 91.94
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 91.37
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 91.32
PF05536543 Neurochondrin: Neurochondrin 91.15
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 90.87
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 90.69
KOG2062929 consensus 26S proteasome regulatory complex, subun 90.64
KOG2956516 consensus CLIP-associating protein [General functi 90.6
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 90.45
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.24
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 90.05
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 89.88
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.69
KOG2062929 consensus 26S proteasome regulatory complex, subun 89.28
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 89.26
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 88.58
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 88.42
KOG04131529 consensus Uncharacterized conserved protein relate 87.94
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 87.84
KOG4653982 consensus Uncharacterized conserved protein [Funct 87.76
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 87.39
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 87.29
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 87.25
cd06561197 AlkD_like A new structural DNA glycosylase. This d 87.19
KOG2956516 consensus CLIP-associating protein [General functi 87.17
PF13251182 DUF4042: Domain of unknown function (DUF4042) 86.16
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 85.56
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 85.38
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 84.82
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 84.5
COG5116926 RPN2 26S proteasome regulatory complex component [ 84.28
KOG2933334 consensus Uncharacterized conserved protein [Funct 84.01
KOG22741005 consensus Predicted importin 9 [Intracellular traf 83.99
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 83.72
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 83.43
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 82.43
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 82.39
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 82.35
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 81.89
KOG2032533 consensus Uncharacterized conserved protein [Funct 81.53
PF11935239 DUF3453: Domain of unknown function (DUF3453); Int 80.58
KOG1820815 consensus Microtubule-associated protein [Cytoskel 80.2
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.5e-124  Score=1043.98  Aligned_cols=691  Identities=63%  Similarity=0.961  Sum_probs=632.4

Q ss_pred             CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (772)
Q Consensus         1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~   80 (772)
                      ||+|+|||.+|++|+||+++.|+++|||+|||+++|+..+|+++++++|+|.||+.|+||.+|++|+|+||+++++.+.+
T Consensus        41 Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~e  120 (734)
T KOG1061|consen   41 MTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITE  120 (734)
T ss_pred             CccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCC-Cccccc
Q 004132           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSR-PIFEIT  159 (772)
Q Consensus        81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~-~~~~l~  159 (772)
                      +++.+++++++|.+|||||+|+.|+.|+|+.+++++++.||.+.|++++.|+||+|++||+++|.||.+.++. ..+.++
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~  200 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN  200 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998764 568899


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhcCChHHHHHHH
Q 004132          160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITSTDVVRNLC  239 (772)
Q Consensus       160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i~~~~~~~~l~  239 (772)
                      ++.++++++++++|+||+|+.||+.+.+|.|+++.+++++++++.++|+|+|++|++.++|++++..+++.  +....+.
T Consensus       201 ~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~--~~~~~~~  278 (734)
T KOG1061|consen  201 PQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLK--QVNELLF  278 (734)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHH--HHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999877653  3556788


Q ss_pred             HhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHHh
Q 004132          240 KKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKEY  319 (772)
Q Consensus       240 ~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~y  319 (772)
                      +|+.++|++++++.++++|++|++++.+++++|++|..++++|||+|+||+|||.+||+++..+++.+|+.+|+.||.+|
T Consensus       279 ~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY  358 (734)
T KOG1061|consen  279 KKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY  358 (734)
T ss_pred             HHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCCh
Q 004132          320 ATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDE  399 (772)
Q Consensus       320 ~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~~  399 (772)
                      ++++|.+|+|++|++||+||.|++.. +.||++++++++.+.+||++|+++++++++|+||+.++.++..+|+.++.+++
T Consensus       359 atevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~e  437 (734)
T KOG1061|consen  359 ATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQE  437 (734)
T ss_pred             hhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCC
Confidence            99999999999999999999999888 88999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHHH
Q 004132          400 PEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLR  479 (772)
Q Consensus       400 p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dvr  479 (772)
                      |+||++++||+|||++.|+|++++|+.|+++|.+|+.+||+++|||.+|+|+++|.+ ++++++.+|..|+.+++|+|+|
T Consensus       438 peak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~-tq~~l~~vL~~~~~d~~~~dlr  516 (734)
T KOG1061|consen  438 PEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE-TQELLQGVLPLATADTDNPDLR  516 (734)
T ss_pred             hHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHhhhhccccChhhh
Confidence            999999999999999999999999999999999999999999999999999999986 9999999999999999999999


Q ss_pred             hhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhhccccccCCCCCCCCCCCC
Q 004132          480 DRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNG  559 (772)
Q Consensus       480 dRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~~~~~~~~~~~~~~~~~~~  559 (772)
                      |||++|||+|+.++..|+++++++||.++...+.+++.++|+|+++|||+|+||||||+.|+++.+.+....+....-..
T Consensus       517 Dr~l~Y~RlLs~~~~~a~~v~~~~kP~is~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~~~~~~l~~  596 (734)
T KOG1061|consen  517 DRGLIYWRLLSEDPLIAKDVVLAEKPLISEETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKRDEVGVLLS  596 (734)
T ss_pred             hhHHHHHHHhhcCHHHHHHHHhcCCCccccCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCCcchhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999887754411111000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC-CCcCCCCCCCCCCCCCCCCCCCcccccccCCCCCccccCCCCCCCCCCCcccc
Q 004132          560 SEQGYSDAPTHVADEGASPQTSSSNA-PYAATRQPAPPPAAPVSPPVPDLLGDLIGLDNSAAIVPADQAAASPVPALPVV  638 (772)
Q Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~  638 (772)
                          -++        +   ++..+|+ ++..                  .-+|+++.++.            .       
T Consensus       597 ----~~~--------s---~~~~~D~~~~~~------------------es~~~~~~~g~------------~-------  624 (734)
T KOG1061|consen  597 ----FAE--------S---QPSIGDLLGGGL------------------ESLDLFDLGGL------------G-------  624 (734)
T ss_pred             ----ccc--------c---CCCchhhccCcc------------------cccccccCCCC------------c-------
Confidence                000        0   0000000 0000                  00022221110            0       


Q ss_pred             ccCCCCCCeEEEEEEeeeCCeeEEEEEEEecCCCCccccceeeccCccCcccCCCCCC-CcCCCCCeeeEEEeeeecCCC
Q 004132          639 LPASTGQGLQIGAELTRQDGQVFYSMLFENNTQTPLDGFMIQFNKNTFGLAAGGALQV-PQLQPGTSGRTLLPMVLFQNM  717 (772)
Q Consensus       639 ~~~~~~~gl~i~~~~~~~~~~~~~~~~~tN~~~~~~~~f~~q~n~n~fgl~~~~~~~~-~~l~p~~~~~~~~~l~~~~~~  717 (772)
                           .-+++++.+|.|+.+.+++.+.+||++.+...+|.+|||    | .|  +.+. .+..|+++...++|+++.++.
T Consensus       625 -----t~~~e~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~f~----~-a~--s~~~~~P~~~~~~~~~~~~l~~~~~~  692 (734)
T KOG1061|consen  625 -----TLSLEVSSQFTRKEGELVIYMKFTNKANSIRIDFEIQFN----G-AP--SLANSKPLLPNGKAVDSLPLGTFGLM  692 (734)
T ss_pred             -----ccchhhhcceecccccccccccccccccchhhhhHhhcC----C-CC--cccCCCCCccccchhhccCcchhhhh
Confidence                 011789999999999999999999999999999999999    4 22  2333 488899999999999999999


Q ss_pred             CCCCCCcchhhhhhcCCCCeEEEeeccccchhcccCCCCChhhHHHhcccccc
Q 004132          718 SAGPPSSLLQVAVKNNQQPVWYFNDKISLHVLFTEDGRMERGSFLEVKTCSFV  770 (772)
Q Consensus       718 ~~~~~~~~lqvAik~n~~~v~yf~~~~p~~~l~~~~g~~~~~~F~~~W~~~~~  770 (772)
                      .+++|..++|+|+|||       .+..+...+|.++|+|    |+++|+.+|+
T Consensus       693 ~~~~~~~~~q~~~~~~-------~~~~~~~~~~v~~~~~----~~~t~~~~~~  734 (734)
T KOG1061|consen  693 RPMEPLSNLQEAVKNN-------KALNMLKTLFVEDGSM----FLATWKGIPN  734 (734)
T ss_pred             ccCCCcchHHHHHhch-------HhhccchhHHHHHHHH----HHHhhccCCC
Confidence            9999999999999999       5678889999999999    9999999986

>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>cd06561 AlkD_like A new structural DNA glycosylase Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query772
1w63_B584 Ap1 Clathrin Adaptor Core Length = 584 0.0
2vgl_B591 Ap2 Clathrin Adaptor Core Length = 591 0.0
2xa7_B592 Ap2 Clathrin Adaptor Core In Active Complex With Ca 0.0
2iv9_A238 B2-Appendage From Ap2 In Complex With Eps15 Peptide 4e-14
3h1z_A260 Molecular Basis For The Association Of Pipkigamma - 8e-14
1e42_A258 Beta2-Adaptin Appendage Domain, From Clathrin Adapt 9e-14
1w63_A618 Ap1 Clathrin Adaptor Core Length = 618 5e-05
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core Length = 584 Back     alignment and structure 
Iteration: 1

 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/543 (70%), Positives = 452/543 (83%), Gaps = 3/543 (0%)
Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVS+LF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVNTFVKD +DPNP
Sbjct: 41  MTVGKDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNP 100
Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160
Query: 121 FLESLKDLISDXX-XXXXXXXXXXXXXXXXXSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL++LKDLISD                     S  + ++ + +++KLLTALNECTEW Q+
Sbjct: 161 FLDTLKDLISDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQI 220
Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELITS-TDVVRNL 238
           FILD L  Y   D REA++I ERVTPRL HAN AVVLSAVK++++ ME+++   D    L
Sbjct: 221 FILDCLGNYMPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATL 280
Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLSAEPE QYV LRNINLIVQ+RP IL HE+KVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLD 340
Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400
Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VIKDIFR+YPN YES+IATLCE+LD+ DEPEA+A+MIWI+GEYAER D
Sbjct: 401 TKVNYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSDDEPEARAAMIWIVGEYAERSD 460
Query: 419 NADXXXXXXXXXXXXXXAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NAD               QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLDGFHDESTQVQLQLLTAIVKLFLKKPTET-QELVQQVLSLATQDSDNPDL 519
Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPN 579
Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core Length = 591 Back     alignment and structure
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo Peptides Length = 592 Back     alignment and structure
>pdb|2IV9|A Chain A, B2-Appendage From Ap2 In Complex With Eps15 Peptide Length = 238 Back     alignment and structure
>pdb|3H1Z|A Chain A, Molecular Basis For The Association Of Pipkigamma -P90 With The Clathrin Adaptor Ap-2 Length = 260 Back     alignment and structure
>pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2 Length = 258 Back     alignment and structure
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core Length = 618 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query772
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 0.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 1e-163
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 1e-162
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 4e-64
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 3e-41
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 2e-16
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 3e-11
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 7e-06
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 3e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-11
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-10
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-11
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-06
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-09
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-08
2db0_A253 253AA long hypothetical protein; heat repeats, hel 4e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 2e-04
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-04
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-06
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 5e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 2e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 4e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-04
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 7e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 4e-04
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 7e-05
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-04
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 5e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 5e-04
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
 Score =  711 bits (1836), Expect = 0.0
 Identities = 402/543 (74%), Positives = 482/543 (88%), Gaps = 3/543 (0%)

Query: 1   MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNP 60
           MTVGKDVSSLF DVVNCMQT+NLELKKLVYLYL+NYAKSQPD+AI+AVN+FVKD +DPNP
Sbjct: 41  MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNP 100

Query: 61  LIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRG 120
           LIRALAVRTMGCIRVDKITEYLC+PL++CLKD+DPYVRKTAA+CVAKL+DINA++VED+G
Sbjct: 101 LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQG 160

Query: 121 FLESLKDLISDNNPMVVANAVAALAEI-EENSSRPIFEITSHTLSKLLTALNECTEWGQV 179
           FL+SL+DLI+D+NPMVVANAVAAL+EI E + +  + ++    ++KLLTALNECTEWGQ+
Sbjct: 161 FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQI 220

Query: 180 FILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL 238
           FILD LS Y   D REA++I ERVTPRL HAN AVVLSAVK++++ +EL+   +D    L
Sbjct: 221 FILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280

Query: 239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLE 298
            KK+APPLVTLLS EPE+QYVALRNINLIVQ+RP IL  EIKVFF KYNDPIYVK+EKL+
Sbjct: 281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340

Query: 299 IMIKLASDRNIDQVLLEFKEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIK 358
           IMI+LAS  NI QVL E KEYATEVDVDFVRKAVRAIGRCAIK+E++AERC+S LL+LI+
Sbjct: 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQ 400

Query: 359 IKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERID 418
            KVNYVVQEAI+VI+DIFR+YPN YESIIATLCE+LD+LDEP+A+A+MIWI+GEYAERID
Sbjct: 401 TKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460

Query: 419 NADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL 478
           NADELLESFLE F +E  QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDL
Sbjct: 461 NADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDL 519

Query: 479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPE 538
           RDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP 
Sbjct: 520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPN 579

Query: 539 AFV 541
           AFV
Sbjct: 580 AFV 582
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618 Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Length = 621 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Length = 355 Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Length = 258 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query772
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 100.0
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 100.0
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 100.0
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 100.0
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.8
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 99.72
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.68
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 99.64
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.62
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.6
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.59
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.58
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.57
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.56
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.56
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.55
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 99.52
1qgr_A876 Protein (importin beta subunit); transport recepto 99.5
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.48
1qgr_A876 Protein (importin beta subunit); transport recepto 99.47
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.47
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.46
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.43
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.41
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.41
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.41
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.4
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 99.37
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.36
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.36
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.34
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.33
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.32
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.27
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.27
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.26
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.24
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.22
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.18
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.16
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.14
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.07
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.0
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.91
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 98.9
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 98.82
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.74
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.71
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.67
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.63
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 98.57
2x19_B963 Importin-13; nuclear transport, protein transport; 98.53
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.52
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.5
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.49
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 98.49
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.47
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.46
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.45
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 98.43
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 98.33
3nmz_A458 APC variant protein; protein-protein complex, arma 98.31
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.29
2x1g_F971 Cadmus; transport protein, developmental protein, 98.27
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.25
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.22
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 98.14
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 98.13
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.06
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.05
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.05
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.99
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.98
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 97.93
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.9
3nmz_A458 APC variant protein; protein-protein complex, arma 97.86
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 97.81
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 97.79
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 97.78
2x19_B963 Importin-13; nuclear transport, protein transport; 97.75
2x1g_F971 Cadmus; transport protein, developmental protein, 97.73
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 97.7
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.68
3grl_A651 General vesicular transport factor P115; vesicle t 97.63
2db0_A253 253AA long hypothetical protein; heat repeats, hel 97.59
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 97.56
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 97.51
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 97.47
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 97.42
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.35
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 97.32
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.25
3grl_A651 General vesicular transport factor P115; vesicle t 97.08
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 96.89
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 96.77
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 96.77
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 96.75
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 96.75
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.59
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 96.55
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 96.53
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 96.43
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 96.34
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.3
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 96.18
1p4u_A153 ADP-ribosylation factor binding protein GGA3; prot 95.99
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 95.87
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 95.74
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 95.68
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 95.06
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.86
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 94.81
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 93.28
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 92.68
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 92.66
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 92.47
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 91.98
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 91.87
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 91.5
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.36
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 90.95
1lsh_A 1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.83
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 88.46
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 84.82
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 83.27
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
Probab=100.00  E-value=5.6e-91  Score=817.12  Aligned_cols=547  Identities=73%  Similarity=1.165  Sum_probs=516.4

Q ss_pred             CCCCCCccchhHHHHHhhcCCCcchHHHHHHHHHHhccCCCcHHHHHHHHHHhhcCCCCHHHHhHHHHHhcCCChhhhHH
Q 004132            1 MTVGKDVSSLFTDVVNCMQTENLELKKLVYLYLINYAKSQPDLAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITE   80 (772)
Q Consensus         1 mt~G~Dvs~lf~~vi~l~~s~~~~lKrl~YL~l~~~~~~~~dl~lL~iNtl~kDl~~~np~iralALrtl~~I~~~ei~~   80 (772)
                      |++|+|++++|++++++++++|+++||+||+|++++++.+||.+++++|+|+||++|+||.+|++|||+||+++.+++.+
T Consensus        41 ~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~  120 (591)
T 2vgl_B           41 MTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITE  120 (591)
T ss_dssp             HHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHH
T ss_pred             HHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCChHHHHHHHHHHHHHHhhccccccccchHHHHHHhhcCCChhHHHHHHHHHHHHHhhCCCC-ccccc
Q 004132           81 YLCDPLQRCLKDDDPYVRKTAAICVAKLYDINAELVEDRGFLESLKDLISDNNPMVVANAVAALAEIEENSSRP-IFEIT  159 (772)
Q Consensus        81 ~l~~~v~~~L~d~~pyVRK~Aa~~l~kl~~~~p~~~~~~~~~~~L~~lL~D~d~~Vv~~av~aL~eI~~~~~~~-~~~l~  159 (772)
                      ++.++|++++.|++|||||+|+.|++|+|+.+|+.+++.+|++.+..+|+|+|++|+.+|+.+|.+|+..++.. .+.+.
T Consensus       121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~  200 (591)
T 2vgl_B          121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN  200 (591)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence            99999999999999999999999999999999999987789999999999999999999999999999887654 56777


Q ss_pred             HHHHHHHHHHhhcCChhHHHHHHHHHhccccCCHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHhhhhc-CChHHHHHH
Q 004132          160 SHTLSKLLTALNECTEWGQVFILDALSRYKAADAREAENIVERVTPRLQHANCAVVLSAVKMILQQMELI-TSTDVVRNL  238 (772)
Q Consensus       160 ~~~~~~Ll~~L~~~~ew~qv~iL~~L~~~~~~~~~e~~~il~~v~~~L~~~n~aVv~eaik~i~~~~~~i-~~~~~~~~l  238 (772)
                      +..+.+|++.+.+++||+|+++|++|+.|.|.++++...+++.+.++++|.|++|+++|+++++++.+.+ .+++.++.+
T Consensus       201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~  280 (591)
T 2vgl_B          201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML  280 (591)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred             HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999999876544 245667777


Q ss_pred             HHhcccchhhccCCchhHHHHHHHHHHHHHhhChhhhhhhcceeeeccCCcHhHHHHHHHHHHHhcccccHHHHHHHHHH
Q 004132          239 CKKMAPPLVTLLSAEPEIQYVALRNINLIVQRRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEFKE  318 (772)
Q Consensus       239 ~~~~~~~L~~Lls~~~~iryvaL~~l~~i~~~~p~~~~~~~~if~~~~~d~~~Ik~~kL~lL~~L~n~~Nv~~Il~EL~~  318 (772)
                      ..++.++|++|+++++|+||+||++|..+++.+|+.+.+|++.|+|+++||.+||++|+++|+++++++|++.|++||.+
T Consensus       281 ~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~  360 (591)
T 2vgl_B          281 LKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKE  360 (591)
T ss_dssp             HHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHH
Confidence            77888999999899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCcccHHHHHHHHHHhcccCC
Q 004132          319 YATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKVNYVVQEAIIVIKDIFRRYPNTYESIIATLCESLDTLD  398 (772)
Q Consensus       319 y~~~~d~~~~~~~v~aIg~la~k~~~~~~~~vd~Ll~ll~~~~~~v~~e~i~~l~~i~~~~p~~~~~ii~~L~~~l~~~~  398 (772)
                      |+++.|.+|+++++++||.||.++++.++||+++|+++++..++++.++++.+++++++++|+.+++++..|++.++++.
T Consensus       361 ~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~  440 (591)
T 2vgl_B          361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLD  440 (591)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCC
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             hHHHHHHHHHHHhhhccccCCHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhhhcCCCChHH
Q 004132          399 EPEAKASMIWIIGEYAERIDNADELLESFLESFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDL  478 (772)
Q Consensus       399 ~p~a~~~~iwilGEy~~~i~~~~~~L~~l~~~f~~e~~~vq~~lLta~~Kl~~~~p~~~~~~~v~~vl~~~~~~s~~~dv  478 (772)
                      +|+++++++|++||||+.+++++++++.++++|.++++.||.++|+|++|++.+.|++ .++.++++++.++.++.|+||
T Consensus       441 ~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~ev  519 (591)
T 2vgl_B          441 EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDL  519 (591)
T ss_dssp             SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHH
T ss_pred             CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHH
Confidence            9999999999999999999999999999999999999999999999999999999975 678999999998778899999


Q ss_pred             HhhHHHHHHHhcCCHHHHHhhhccCCCCCCCCCCCCChHHHHHHHHhcCcccccccCCchhhhccccccC
Q 004132          479 RDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTA  548 (772)
Q Consensus       479 rdRA~~y~~Ll~~~~~~~~~ivl~~~p~~~~~~~~~~~~~l~~l~~~~~tl~~vy~kp~~~~~~~~~~~~  548 (772)
                      ||||++||+||+.+++.++++|+++||++++.++.++++++++|+.+|||+|+||||||+.|+++.+...
T Consensus       520 rdRA~~y~~ll~~~~~~~~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~~~~  589 (591)
T 2vgl_B          520 RDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSHGIH  589 (591)
T ss_dssp             HHHHHHHHTTTTTCTTHHHHHHTSCCCCCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC-------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHcCCCCCCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCccccc
Confidence            9999999999998889999999999999999888999999999999999999999999999998876543
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1p4u_A ADP-ribosylation factor binding protein GGA3; protein transport; 2.20A {Homo sapiens} SCOP: b.1.10.2 PDB: 1om9_A 1na8_A 2dwy_A 2dwx_A Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 772
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 1e-175
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 1e-121
d1e42a1120 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, 5e-45
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 5e-14
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 8e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.002
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 2e-07
d1oyza_276 a.118.1.16 (A:) Hypothetical protein YibA {Escheri 6e-06
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 6e-07
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-06
d1te4a_111 a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium 2e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 1e-04
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 0.002
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query772
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 100.0
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 100.0
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.77
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.64
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.49
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.38
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.34
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.27
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.24
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.22
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.2
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.19
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.18
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 99.16
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.15
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.09
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 98.99
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.98
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.94
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.88
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.86
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.67
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.64
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.53
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.43
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 98.3
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.13
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 98.08
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.81
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.37
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 97.31
d1p4ua_145 ADP-ribosylation factor binding protein Gga3 domai 96.96
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 96.73
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 96.71
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 96.52
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 95.59
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 95.55
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.07
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 95.01
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 93.96
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p4ua_ b.1.10.2 (A:) ADP-ribosylation factor binding protein Gga3 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure