Citrus Sinensis ID: 004141
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.333 | 3e-99 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.326 | 3e-97 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.853 | 0.898 | 0.323 | 2e-94 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.859 | 0.905 | 0.314 | 2e-93 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.853 | 0.901 | 0.324 | 5e-92 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.289 | 0.339 | 0.320 | 5e-31 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.287 | 0.3 | 0.293 | 5e-23 | |
| Q95WU5 | 761 | Dipeptidyl-peptidase 4 OS | N/A | no | 0.304 | 0.308 | 0.237 | 7e-14 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.256 | 0.340 | 0.264 | 2e-13 | |
| Q5BA58 | 722 | Probable dipeptidyl-pepti | yes | no | 0.290 | 0.310 | 0.236 | 7e-13 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 242/725 (33%), Positives = 369/725 (50%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLDRMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GAVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 226
P +F S + K + KG Q + EDWGET K P L V++I
Sbjct: 171 PKAESFFQTKALDVSASDEEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDIE 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+S K E S E L V + PR SPD +V+L S H
Sbjct: 287 LSGGKCELL-------SDESLAVCS----------PRLSPDQCRVVYLQYPSL---APHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T +SL +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLFLYDWYTK--VTSL--VVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466
S+ S Q + +V+ +G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SVQRSRQDLFAVDTQTGSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLP 439
Query: 467 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ + SW+++ + PI ++ ++ P + A FEAI
Sbjct: 440 PAGKEQSVSWVSLEEAEPIPDIHWGIR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D S P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNSPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A+ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+ M+GTTDIPDWC VE+ D P + L KSPI +I +VK
Sbjct: 608 IARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYL---PDLNVLEEMLDKSPIKYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP GL+Y AL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGLEYYHALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVL 724
Query: 765 WFKKY 769
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1 |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 356 bits (914), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 237/725 (32%), Positives = 370/725 (51%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 226
P +F S + K + KG Q + EDWGET K P L V++I+
Sbjct: 171 PKAESFFQTKALDISASDDEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDID 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+S K E L++ + PR SPD +V+L H
Sbjct: 287 LSGGKCEL-----------------LSDGSLAICSPRLSPDQCRIVYLQYPCL---APHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVT----SVVVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466
S S Q + +V+ +G + +T A S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQTGSITSLTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLP 439
Query: 467 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ + SW+++ + PI V+ ++ P + A FEAI
Sbjct: 440 PPGKEQSVSWVSLEEAEPIPGIHWGVR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+A M+G+TDIPDWC VE+ G +S P + KSPI +I +VK
Sbjct: 608 IARNPVINIASMMGSTDIPDWCMVET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + +++ +SF+N L
Sbjct: 665 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVL 724
Query: 765 WFKKY 769
W +
Sbjct: 725 WLHTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 347 bits (891), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 234/724 (32%), Positives = 363/724 (50%), Gaps = 66/724 (9%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
E E+W +++ K F++ HG VY D F +SW+ ET + YVA++
Sbjct: 111 GTGTAEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVADKKR 170
Query: 176 PSKPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVIN 224
P +F TK GS D+ + K +GD + EDWGE K P L V++
Sbjct: 171 PKAESFF--QTKALDVTGSDDEMARTKKPDQAIKGDQFLFYEDWGENMVSKSTPVLCVLD 228
Query: 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284
I SG + ++G+P+S+S GQ WAP + G+ VFVGW E +LGI++C NR ALY
Sbjct: 229 IESGNISVLEGVPESVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRFCTNRRSALYY 284
Query: 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344
V ++ K E S E + V + PR SPD +V+L S V
Sbjct: 285 VDLTGGKCELL-------SDESVAVTS----------PRLSPDQCRIVYLRFPSLV---P 324
Query: 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404
H L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 325 HQQCGQLCLYDWYTRVT----SVVVDIVPR---QLGEDFSGIYCSLLPLGCWSADSQRVV 377
Query: 405 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464
S S Q + +V+ G + +T S SW LLT+D D ++ S+P P +K G+
Sbjct: 378 FDSPQRSRQDLFAVDTQMGSVTSLTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGF 437
Query: 465 FVDKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 522
+ SW+++ + P ++ L Q + A FE
Sbjct: 438 LPPAGKEQAVSWVSLEEAEPFPDISWSIRVLQPPPQ------------QEHVQYAGLDFE 485
Query: 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 582
AI + S+ + + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+
Sbjct: 486 AILLQPSNSPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 583 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 642
+++ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ +
Sbjct: 546 DSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYS 605
Query: 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 702
A RNP+ N+A M+G+TDIPDWC VE+ S D P + KSPI + +
Sbjct: 606 ACVVRNPVINIASMMGSTDIPDWCMVEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQ 662
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762
VKTP + +LG +D RVP G++Y R L+ + V +++++P H + + + +SF+N
Sbjct: 663 VKTPLLLMLGQEDRRVPFKQGMEYYRVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNA 722
Query: 763 GLWF 766
LW
Sbjct: 723 VLWL 726
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 228/725 (31%), Positives = 362/725 (49%), Gaps = 62/725 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 121 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175
P + E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 176 PSKPTF-SLGSTKGGSSDKDCNSWKG-----QGD---WEEDWGETYAGKRQPSLFVININ 226
P +F + +SD + K +GD + EDWGE K P L V+++
Sbjct: 171 PKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVE 230
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI++C NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDAGV----VFVGWWHEPFRLGIRFCTNRRSALYYVD 286
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
+ K E L++ + PR SPD +V+L S + H
Sbjct: 287 LIGGKCEL-----------------LSDDSLAVSSPRLSPDQCRIVYLQYPSLI---PHH 326
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVTSVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 465
S S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLP 439
Query: 466 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
K W L + PI ++ +++ P + + A FEAI
Sbjct: 440 SAGKEQSVLWVSLEEAEPIPDIHWGIR---------VLQPPPEQENVQY---AGLDFEAI 487
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VG QDV DV A++ V+ + S V ++GGSHGGF++ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRAC 607
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
ARNP+ N+A M+G+TDIPDWC VE+ D P + KSPI +I +VK
Sbjct: 608 VARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVK 664
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N L
Sbjct: 665 TPLLLMLGQEDRRVPFKQGMEYYRALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVL 724
Query: 765 WFKKY 769
W + +
Sbjct: 725 WLRTH 729
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 234/722 (32%), Positives = 364/722 (50%), Gaps = 64/722 (8%)
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 119
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 120 -ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+ P
Sbjct: 111 STGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPK 170
Query: 178 KPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVININ 226
+F TK GS D+ K +GD + EDWGE K P L V++I
Sbjct: 171 AESFF--QTKALDISGSDDEMARPKKPDQAIKGDQFLFYEDWGENMVSKGSPVLCVLDIE 228
Query: 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286
SG + ++G+P+S+S GQ WAP + G+ VF GW E +LGI++C NR ALY V
Sbjct: 229 SGNISVLEGVPESVSPGQAFWAPGDTGV----VFAGWWHEPFRLGIRFCTNRRSALYYVD 284
Query: 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346
++ EL S + L V + PR SPD +V+L S V H
Sbjct: 285 LT-----GGNCELL--SDDSLAVTS----------PRLSPDQCRIVYLQFPSLV---PHQ 324
Query: 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 325 QCGQLCLYDWYTRVTVVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 377
Query: 407 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 465
+ S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 378 TAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLTIDRDLMVAQFSTPNLPPCLKVGFLP 437
Query: 466 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 524
+ W L + PI ++ +++ P + A FEAI
Sbjct: 438 PAGMEQEVVWVSLEEAEPIPDISWSIR---------VLQPPPEQEHAQYVG---LDFEAI 485
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584
+ S+ D + P++V+ HGGPHS ++S+ A L +G++ L+VNYRGS GFG+++
Sbjct: 486 LIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQDS 545
Query: 585 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 644
+ SLPG VGSQDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 546 ILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGAC 605
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704
RNP+ N+A M+G+TDIPDWC VE+ D + P+V + +KSPI + +VK
Sbjct: 606 VVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD-PNV--WSEMLNKSPIKYTPQVK 662
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
TP + +LG +D RVP G++Y RAL+ + V +++++P H + + + +SF+N +
Sbjct: 663 TPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLLYPKSTHSLSEVEVESDSFMNAVI 722
Query: 765 WF 766
W
Sbjct: 723 WM 724
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLI+ +HGGPH + +Y L++ GY+++ +N RGS G+G+E + ++ G G +D
Sbjct: 431 PLILNIHGGPHMMYGHTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDY 490
Query: 598 NDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+DV+ A+D I +P ++ V GGS+GGF+T ++GQ ++F AA + + N
Sbjct: 491 DDVMQAVDEAIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQT-NRFKAAVTQRSISNWISF 549
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
G +DI G D E ED + +SP+ + + V+TP + L G +D
Sbjct: 550 HGVSDI---------GYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDD 600
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKYC 770
R P+ Q AL++ G ETK++ FPN H + R P+ + I WF ++
Sbjct: 601 RCPIEQAEQLFIALKKMGKETKLVRFPNASHNLSRTGHPRQRIKRLNYISSWFDQHL 657
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 13/235 (5%)
Query: 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598
+IV++HGGP + +S A+L++ GYS+L VN+RGS GFG+ + G+ G +
Sbjct: 431 MIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHF 490
Query: 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
D+L A++ + G+AN S+V V+GGS+GG+ T + P F NL +V
Sbjct: 491 DILDAVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ 550
Query: 659 TTDIPDWC-----YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
P W ++ G+ D E S+SP+ +V P + + GA
Sbjct: 551 AIP-PYWLGFRKDLIKMVGADISDE-------EGRQSLQSRSPLFFADRVTKPIMIIQGA 602
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D RV + Q+ AL +K + +++P++ HG+ +PQ+ E +I + ++
Sbjct: 603 NDPRVKQAESDQFVAALEKKHIPVTYLLYPDEGHGVRKPQNSMEQHGHIETFLQQ 657
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q95WU5|DPP_GIAIN Dipeptidyl-peptidase 4 OS=Giardia intestinalis GN=DPP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 18/253 (7%)
Query: 525 FVSSSHKKDCSCDPLIVVLHGGPHS--VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 582
+ + ++ +D PLI+ +HGGP S + SY + +++ GY +L N+ GS FGE
Sbjct: 518 YFAPANLRDSHEYPLILYVHGGPESPWANSWSYRWNPQLIAARGYGVLATNFHGSSSFGE 577
Query: 583 EALQSLPGKVGSQDVNDVLTAIDHVI---DMGLANPSKVTVVGGSHGGFLTTHL---IGQ 636
+S+ G S + D++ A ++ D + KV +G S G ++ +
Sbjct: 578 VFQKSVRGNWYSYPLEDIMDAWSNIYTHADKAYLSREKVCAMGASFGATFMNYMNSHVNN 637
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ +CN AL P V G F V++ + +P
Sbjct: 638 VTCYVTHDGVFDTMCN-ALETDELFFP----VRELGG-----FLLDEQVDNQQLYEKWNP 687
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
+ + P + + G +D R+ V +G+ +ALR +G++TK++ FP H + +PQ
Sbjct: 688 ARFVENMSAPMLVIHGQKDYRIQVYHGISLFQALRLRGIKTKLVYFPTQSHWVWQPQESL 747
Query: 757 ESFLNIGLWFKKY 769
+ W Y
Sbjct: 748 FWHTQVFDWLDTY 760
|
May be involved in metabolism of dipeptides or may affect host defense mechanisms. Giardia intestinalis (taxid: 5741) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 14/212 (6%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
P+ L+ L +G + + P+ H I
Sbjct: 527 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAI 558
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|Q5BA58|DPP5_EMENI Probable dipeptidyl-peptidase 5 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dpp5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 13/237 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
PL ++HGGP +S+S + GY ++ N GS G+G+E ++ G
Sbjct: 469 PLAFLIHGGPQGAWYNSWSSRWNPKVFADQGYVVVAPNPTGSTGYGDELTDAIQNNWGGA 528
Query: 596 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNL 653
D++ A ++V D + + + G S+GGF+ + G + F A +
Sbjct: 529 PYEDLVKAWEYVRDNLDYVDTDRGVAAGASYGGFMVNWIQGSDLGREFKALVTHDGTFVA 588
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+ T ++ W + D V D R S I + TP + +
Sbjct: 589 DAKISTEEL--WFMEREFNGTFWD-------VRDNYRRFDPSAPERILRFATPHLIIHND 639
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770
D R+PV+ GL L+E+GV ++ + FP++ H + P++ + W KY
Sbjct: 640 LDYRLPVAEGLSLFNVLQERGVPSRFLNFPDENHWVTSPENSLVWHQQVLGWLNKYS 696
|
Extracellular dipeptidyl-peptidase which removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| 359477374 | 822 | PREDICTED: acylamino-acid-releasing enzy | 0.998 | 0.936 | 0.754 | 0.0 | |
| 356536605 | 766 | PREDICTED: acylamino-acid-releasing enzy | 0.975 | 0.981 | 0.734 | 0.0 | |
| 255551973 | 771 | acylamino-acid-releasing enzyme, putativ | 0.996 | 0.996 | 0.739 | 0.0 | |
| 356534785 | 758 | PREDICTED: acylamino-acid-releasing enzy | 0.979 | 0.996 | 0.696 | 0.0 | |
| 357487227 | 832 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.905 | 0.727 | 0.0 | |
| 357487225 | 768 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.980 | 0.727 | 0.0 | |
| 357487229 | 810 | Acylamino-acid-releasing enzyme [Medicag | 0.976 | 0.929 | 0.641 | 0.0 | |
| 297804842 | 763 | hypothetical protein ARALYDRAFT_915409 [ | 0.983 | 0.993 | 0.660 | 0.0 | |
| 42566792 | 764 | acylaminoacyl-peptidase [Arabidopsis tha | 0.984 | 0.993 | 0.655 | 0.0 | |
| 78708638 | 839 | prolyl oligopeptidase family protein, ex | 0.984 | 0.904 | 0.623 | 0.0 |
| >gi|359477374|ref|XP_002284013.2| PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera] gi|297737147|emb|CBI26348.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1184 bits (3062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 584/774 (75%), Positives = 664/774 (85%), Gaps = 4/774 (0%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTF-NSGNGNGTQAMFS 59
M + ++ K+V +D EE YAS SKLL++FT+I+SIDKAWTF G G+QAMFS
Sbjct: 50 MASCGSSSMKEVPLGIDPAMEETYASQSKLLKEFTSIASIDKAWTFKRDSGGKGSQAMFS 109
Query: 60 ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP 119
ISQ NLLANKR+K +LS ISKE+++SV FQWAPFP+EM G S +VPSPSGSKLLVVRNP
Sbjct: 110 ISQTNLLANKRRKQILSAHISKESDHSVNFQWAPFPIEMMGVSTMVPSPSGSKLLVVRNP 169
Query: 120 ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179
ENESP QFE+W SQLEKEF+VPQ+VHGSVY DGWFEGISWNSDETLIAYVAEEPSPSKP
Sbjct: 170 ENESPTQFEIWGPSQLEKEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSPSKP 229
Query: 180 TFS-LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
TF G KG S+DK+ SWKG G+WEE WGETYAGKRQP+LFVINI SGEV AV+GI K
Sbjct: 230 TFGGSGYKKGDSADKESGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEVHAVEGISK 289
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
SLS+GQV+WAPL EG QYLVFVGWSSETRKLGIKYCYNRPCALYAVR +S+A+EL+
Sbjct: 290 SLSIGQVIWAPLAEGFSQYLVFVGWSSETRKLGIKYCYNRPCALYAVRAPFCESKANELQ 349
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K + +ED VVNLT+SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI WPT
Sbjct: 350 SKSNVNEDSTVVNLTQSISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIAWPT 409
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVIPV+ CAE FPGLY SSILSNPWLSDGCTM+LSS W S+QVI+SV
Sbjct: 410 DGKPCPSANIVDVIPVMMCAEDGYFPGLYCSSILSNPWLSDGCTMILSSAWHSTQVILSV 469
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TWSWL 477
+V SG + ++P +S FSW++LTLDGDNI+AV SSP+D+P++KYG+ +K +WSWL
Sbjct: 470 DVLSGNVSHVSPNDSGFSWNVLTLDGDNIVAVCSSPIDIPEMKYGWLAEKTTASDSWSWL 529
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 537
+VS+PI RC EK++SLLSS QFSIMKIPVK VS LTKG+ KPFEAIFVSS+ K D +CD
Sbjct: 530 DVSNPIPRCSEKIRSLLSSLQFSIMKIPVKDVSDCLTKGSCKPFEAIFVSSNKKND-TCD 588
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLIVVLHGGPHSVS SS+SK+LAFLSS+GYSLLIVNYRGSLGFGEEALQSLPGK+GSQDV
Sbjct: 589 PLIVVLHGGPHSVSSSSFSKNLAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKIGSQDV 648
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
NDVLTAIDHVIDMGL +PSK+ VVGGSHGGFLT+HLIGQAPDKF AA RNP+CNLALMV
Sbjct: 649 NDVLTAIDHVIDMGLCDPSKIAVVGGSHGGFLTSHLIGQAPDKFAVAAVRNPVCNLALMV 708
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
GTTDIPDWC+VE+YGS+GK+SFTE+PS E LT HSKSP+SHI KVKTPT+FLLGAQDLR
Sbjct: 709 GTTDIPDWCFVEAYGSQGKNSFTEAPSAEQLTLLHSKSPVSHIHKVKTPTLFLLGAQDLR 768
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
VPVSNGL YAR L+EKGVE KVI+FPNDVH IERPQSDFESFLNIG+WFKKYC+
Sbjct: 769 VPVSNGLHYARELKEKGVEVKVIIFPNDVHAIERPQSDFESFLNIGVWFKKYCE 822
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536605|ref|XP_003536827.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1159 bits (2998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 560/762 (73%), Positives = 658/762 (86%), Gaps = 10/762 (1%)
Query: 18 ATAEEEYASLSKLLQDFTNISSIDKAWTFNS----GNGNGTQAMFSISQPNLLANKRKKF 73
A AE+EYA S LLQ+FT IS+IDKAW F S + + + AMF +SQPNLL NKRKK
Sbjct: 7 AAAEQEYALHSTLLQEFTAISAIDKAWLFKSHTHTASASSSHAMFCVSQPNLLVNKRKKS 66
Query: 74 MLS-TVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132
++S T++++ + +SVTFQWAPFP++++G SA+VPSPSGSKLL+VRNPE++ P +FE+WS
Sbjct: 67 IVSATILTQNDASSVTFQWAPFPIQVSGVSAMVPSPSGSKLLIVRNPESDGPCRFEIWSS 126
Query: 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGS 190
SQL+KEFH+P + HGSVY DGWFEGISWNSDET IAYVAEEP+P+KPTF+ G K GS
Sbjct: 127 SQLQKEFHIPPSKHGSVYTDGWFEGISWNSDETCIAYVAEEPAPTKPTFNDLGGYKKAGS 186
Query: 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250
S+KDC +WKGQG+WEEDWGETYAGKRQP+ FVININSGEVQAVKGI KSLSVGQVVWAP
Sbjct: 187 SEKDCGTWKGQGEWEEDWGETYAGKRQPAPFVININSGEVQAVKGIDKSLSVGQVVWAPS 246
Query: 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 310
EG Q+LVFVGW+ ETRKLGIKYCYNRPCALY V+ ++S+A+E E+ S+ED+ V
Sbjct: 247 TEGSAQHLVFVGWTFETRKLGIKYCYNRPCALYVVKAPHHESKANETEIH--STEDVQAV 304
Query: 311 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370
NLT++ISSAFFPRFSPDGKFLVF+SA+SSVDSG HSATDSLHRIDWP + KI +
Sbjct: 305 NLTQTISSAFFPRFSPDGKFLVFVSARSSVDSGVHSATDSLHRIDWPEDSKLYKSAKIHE 364
Query: 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430
VIPVV AE FPGLY S+ILS+PWLSDG T++++SIW SSQV++S+NV SGELLRITP
Sbjct: 365 VIPVVLFAEDGGFPGLYCSTILSDPWLSDGYTLVIASIWHSSQVLLSINVLSGELLRITP 424
Query: 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEK 489
A+SNFSWSLL LDG+NI+AVSSSPVDVPQ+KYG V KA N WSW +V++PI +C +K
Sbjct: 425 ADSNFSWSLLALDGNNILAVSSSPVDVPQIKYGAIVKKAANNKEWSWSDVANPIFKCSDK 484
Query: 490 VKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS 549
V+SL+SS FSIMKI VK +SA+LTKGA +P+EAIFVSS KK + DPLIVVLHGGPH+
Sbjct: 485 VRSLISSLTFSIMKISVKDISASLTKGASQPYEAIFVSSKTKKSDALDPLIVVLHGGPHT 544
Query: 550 VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609
VSLSS+SK LA+LSS+GYSLLIVNYRGSLGFGEEALQSLPGK GSQDVNDVLTAIDHVI+
Sbjct: 545 VSLSSFSKPLAYLSSLGYSLLIVNYRGSLGFGEEALQSLPGKAGSQDVNDVLTAIDHVIN 604
Query: 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669
+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNLALMVGTTDIPDWCYVE
Sbjct: 605 LGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLALMVGTTDIPDWCYVE 664
Query: 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729
+YG+KG+D FTE+PS EDLT F+SKSPI+H+SKVKTPTIFLLGAQDLRVP+S GLQYARA
Sbjct: 665 TYGTKGRDKFTEAPSAEDLTLFYSKSPIAHLSKVKTPTIFLLGAQDLRVPISTGLQYARA 724
Query: 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
LREKG + KVIVFPNDVHGIERPQSDFES+LNI +WF KYCK
Sbjct: 725 LREKGGQVKVIVFPNDVHGIERPQSDFESYLNIAMWFNKYCK 766
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551973|ref|XP_002517031.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223543666|gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1153 bits (2983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/774 (73%), Positives = 655/774 (84%), Gaps = 6/774 (0%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MDASKA +++ +DA+ EEEYAS SKLLQ+FT+IS IDKAWTFNS +QA+FSI
Sbjct: 1 MDASKAVSSRESPLGIDASTEEEYASQSKLLQEFTSISRIDKAWTFNSNTDMCSQAIFSI 60
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLL NKR+KFMLS ISK+ SV FQWAPFP+EMTG S +VPSPSGSKLLV+RNPE
Sbjct: 61 SQANLLVNKRRKFMLSASISKQVSGSVNFQWAPFPIEMTGVSTMVPSPSGSKLLVIRNPE 120
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP FE+WSQ Q+EKEFHVPQ+VHGSVY DGWFEGISWNSDETL+A+VAEEPSP KP
Sbjct: 121 NESPTHFEIWSQGQMEKEFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSPPKPV 180
Query: 181 FS-LGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
FS LG G + DKD NSWKGQG+WEE WGETYAGKRQ +LFVI+ +SGEV+ VKGI K
Sbjct: 181 FSGLGYKTGEANKDKDYNSWKGQGEWEEGWGETYAGKRQSALFVISTSSGEVKPVKGIAK 240
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
SLSVGQVVWAP + +Q LVFVGWS++ RKLGIKYCYNRPCALYAV+ +Y+SE SE E
Sbjct: 241 SLSVGQVVWAPSTKDSYQCLVFVGWSADPRKLGIKYCYNRPCALYAVQAPVYRSE-SEFE 299
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
LK++ E P +NLT+SISSAF P FSP G+ LVFLSAKSSVDSGAH T SLHRIDWP
Sbjct: 300 LKDNPIEGSPALNLTQSISSAFLPLFSPVGRLLVFLSAKSSVDSGAHMGTGSLHRIDWPV 359
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
NG SSL KIVDV+PVVQCAE CFPGLY S LSNPWLSDGCTM+LSS+W S +V++S+
Sbjct: 360 NG--SSLPKIVDVVPVVQCAEDGCFPGLYCSGFLSNPWLSDGCTMILSSVWHSCEVLLSI 417
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTWSWL 477
NV SG++ RI+P +S FSW++L LDGDNIIAVSSSPVD+P ++YG V K + TW+WL
Sbjct: 418 NVLSGDVKRISPIDSKFSWNVLALDGDNIIAVSSSPVDMPGIRYGSLVSKTTENATWNWL 477
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 537
+ SSPI RC E+V+SLLSSR F I+KIPVK VS TK A KPFEAI VSS KK+ + D
Sbjct: 478 DASSPIFRCSEEVRSLLSSRHFDILKIPVKDVSGCPTKSASKPFEAIIVSSYSKKNGASD 537
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
PLIV+LHGGPHSVS SS+SKSLAFLSS+GYSLLIVNYRGS+GFGEEALQSLPGKVGSQDV
Sbjct: 538 PLIVMLHGGPHSVSSSSFSKSLAFLSSLGYSLLIVNYRGSIGFGEEALQSLPGKVGSQDV 597
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
NDVLTAIDHVID G+A+PS + V+GGSHGGFLTTHLIGQ+P KFVAAAARNP+CNLA MV
Sbjct: 598 NDVLTAIDHVIDTGIASPSSIAVLGGSHGGFLTTHLIGQSPHKFVAAAARNPVCNLASMV 657
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
GTTDIPDWCYVE+YG+ GK FTE+PS +DL FHSKSPISHISKVK PTIFL+GAQDLR
Sbjct: 658 GTTDIPDWCYVEAYGTGGKSKFTEAPSADDLALFHSKSPISHISKVKAPTIFLIGAQDLR 717
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
VP+SNGLQYARAL+EKGVE K+++FP+DVHGIERPQSDFESFLNIG+WFKKYCK
Sbjct: 718 VPMSNGLQYARALKEKGVEVKILLFPDDVHGIERPQSDFESFLNIGVWFKKYCK 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534785|ref|XP_003535932.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 529/759 (69%), Positives = 625/759 (82%), Gaps = 4/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 75
+ E++YA LS LLQDFT I +IDKAW F+S G+ Q MF +SQP+LL NKR+ ++
Sbjct: 1 MHKETEDDYAYLSNLLQDFTIIPNIDKAWLFSSP-GSQLQGMFVVSQPDLLTNKRRTSIM 59
Query: 76 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 135
S I K++++SV F WAPFP+EM+G S +VPSPSGSKLLV+RNPENE+P FE+WS S++
Sbjct: 60 SCNILKQSDSSVKFLWAPFPIEMSGVSMIVPSPSGSKLLVIRNPENEAPCCFEIWSSSRM 119
Query: 136 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGSSDK 193
EKEFH+PQ++HGSVY DGWFEG+SWN DET IAYVAEE SP+KPTF+ G KGG +DK
Sbjct: 120 EKEFHIPQSLHGSVYNDGWFEGVSWNLDETCIAYVAEESSPAKPTFNDLGGYKKGGCADK 179
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D WKGQGDWEEDWGETYAG+R+P+LFVININS +VQ VKGI KSLS+GQVVWAP EG
Sbjct: 180 DLGYWKGQGDWEEDWGETYAGRRRPALFVININSRDVQEVKGIDKSLSIGQVVWAPFTEG 239
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWSS+ RKLGIKYC NRPCALY VRV E+ E S+E+ +NLT
Sbjct: 240 SEQYLVFVGWSSKPRKLGIKYCSNRPCALYTVRVRALHHESKPNEPVVQSTEEFHALNLT 299
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAFFPRFSPDGKFLVFLSA+S+VDSG H+AT+SLHRIDWPT+G KI D+IP
Sbjct: 300 QTISSAFFPRFSPDGKFLVFLSARSAVDSGVHNATNSLHRIDWPTDGKLFQSSKIYDIIP 359
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CAE CFPGLY ++I +NPWLSD CTM++SSIW SS+V++SVNV SGE+L I+PA+S
Sbjct: 360 VVMCAEDGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSSEVLLSVNVLSGEILHISPADS 419
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT-WSWLNVSSPISRCPEKVKS 492
NFSW+LLTLD +NI+A+SSSPVDVPQ+KYG ++KA T WSW N+SSPI RC +KV S
Sbjct: 420 NFSWNLLTLDRNNIVAISSSPVDVPQIKYGMAIEKATSNTTWSWSNISSPIFRCSDKVVS 479
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS Q SI+ I VK V TKGA K FEAIFV+S K DPLIV+LHGGPH VSL
Sbjct: 480 LLSSLQCSILSISVKDVHDGQTKGATKHFEAIFVTSKTKNKDVFDPLIVILHGGPHDVSL 539
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
S +SK LAF SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++GL
Sbjct: 540 SHFSKYLAFQSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGL 599
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+TV+G SHGGFLTTHLIGQAPDKFVAAAA NP+CNLALM+GTTDIPDWCYVE+ G
Sbjct: 600 ASPSKITVMGISHGGFLTTHLIGQAPDKFVAAAAINPVCNLALMIGTTDIPDWCYVEACG 659
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ K+ FTE PS +DLT F SKSPISH+SKVK PT+FLLGAQD+RVP+ +GLQYARAL+E
Sbjct: 660 TIAKNCFTEPPSADDLTLFQSKSPISHVSKVKAPTLFLLGAQDIRVPIFDGLQYARALKE 719
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGVE K+I+F NDVH ++RPQSD E FL+IG+WF KYCK
Sbjct: 720 KGVEVKIIMFQNDVHALKRPQSDLECFLHIGVWFNKYCK 758
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487227|ref|XP_003613901.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515236|gb|AES96859.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 74
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 77 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 136
Query: 75 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 137 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 196
Query: 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 193
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 197 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 256
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 257 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 316
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 317 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 373
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 374 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 433
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 434 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 493
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 492
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 494 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 553
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 554 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 613
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 614 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 673
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 674 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 733
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 734 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 793
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 794 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 832
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487225|ref|XP_003613900.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515235|gb|AES96858.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1093 bits (2826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/759 (72%), Positives = 642/759 (84%), Gaps = 6/759 (0%)
Query: 16 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 74
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 13 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 72
Query: 75 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 73 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 132
Query: 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 193
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 133 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 192
Query: 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 193 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 252
Query: 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 313
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 253 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 309
Query: 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 310 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 369
Query: 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 370 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 429
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 492
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 430 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 489
Query: 493 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 552
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 490 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 549
Query: 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 550 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 609
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 610 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 669
Query: 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQYARAL+E
Sbjct: 670 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQYARALKE 729
Query: 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
KGV KVI+FPNDVHGI+RPQSDFESFL+I WF KYCK
Sbjct: 730 KGVPVKVILFPNDVHGIDRPQSDFESFLSIAAWFNKYCK 768
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487229|ref|XP_003613902.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515237|gb|AES96860.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/806 (64%), Positives = 617/806 (76%), Gaps = 53/806 (6%)
Query: 17 DATAEEE-YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 75
DAT E+E YASLS LL FT I +I KAW FNS N TQ MFSI+QP++L NK K +L
Sbjct: 7 DATTEKENYASLSNLLPHFTTIPNIHKAWLFNSHTTN-TQGMFSITQPDVLTNKNKTLIL 65
Query: 76 ST--VISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENES--PIQFELW 130
S V K + + V F WAPFP+EM G S +VPSPSGSKLLV+RN ++E FE+W
Sbjct: 66 SCNFVKQKSDGSVVEFLWAPFPIEMRGDVSMIVPSPSGSKLLVIRNSDSEGGGSCCFEIW 125
Query: 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGG 189
S S LEKEF +PQ++HGSVY DGWFEG+SWN DETLIAYVAE PSP+KP F+ G KGG
Sbjct: 126 SSSCLEKEFSIPQSMHGSVYNDGWFEGVSWNLDETLIAYVAEAPSPTKPVFNNTGYKKGG 185
Query: 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249
++ D WKGQG+WEEDWGETYA KRQP+LFVININSGEVQAVKGI KSLS GQVVWAP
Sbjct: 186 CAENDFGIWKGQGEWEEDWGETYAAKRQPTLFVININSGEVQAVKGIDKSLSAGQVVWAP 245
Query: 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 309
EG QYLVFVGWSS TRKLG+KYC NRPCALYAVR ++S++ E E SS+E+L
Sbjct: 246 FTEGSEQYLVFVGWSSGTRKLGMKYCSNRPCALYAVRAPHHESQSEEPE-HHSSTEELHA 304
Query: 310 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369
+NLT +ISSA FPRFSP+GKFLVFLSAKS+V+SG H+AT+SLHRIDWPT+G I
Sbjct: 305 LNLTPTISSALFPRFSPNGKFLVFLSAKSAVNSGVHNATNSLHRIDWPTDGKLYQSANIY 364
Query: 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429
D+IPVV CAE CFPGLY +++ +NPWLSD CTM+LSSIW S +V++SVNV SG++LRI+
Sbjct: 365 DIIPVVMCAEDGCFPGLYCTTVHNNPWLSDNCTMILSSIWHSCEVLLSVNVLSGKILRIS 424
Query: 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN-KGTWSWLNVSSPISRCPE 488
PA+SNFSW+LLTLD DNI+A+SS+PV+VPQ+ YG ++K WSW +SSPI +C +
Sbjct: 425 PADSNFSWNLLTLDEDNILAISSNPVNVPQIMYGMAIEKTKGNSIWSWSKISSPILKCSD 484
Query: 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH 548
KV+SLLSS Q SI+KIPV S+N TKGA KPFEAIFVSS K DPLIV+LHGGP
Sbjct: 485 KVRSLLSSIQCSILKIPVTDGSSNTTKGAAKPFEAIFVSSKTKNKDVFDPLIVILHGGPQ 544
Query: 549 SVSLSSYSKSLAFLSSVGYSL-------------------------------LIVNY--- 574
VS S +S S AFLSSVGYSL +I+++
Sbjct: 545 DVSSSHFSNSWAFLSSVGYSLDLVGTCILQHQNHSIKACLEKKRKTKNTAPCIIISFKDS 604
Query: 575 ---------RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 625
RGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++G A+PSK+TV+G SH
Sbjct: 605 YKFTTLLFLRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGHASPSKITVMGISH 664
Query: 626 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 685
GGFLTTHLIGQAP+KFVAAAA NP+CNLA+MVGTTDIPDWCYVE++G+ +D F+E+PS
Sbjct: 665 GGFLTTHLIGQAPEKFVAAAAINPVCNLAMMVGTTDIPDWCYVEAFGTTARDCFSEAPSA 724
Query: 686 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745
EDLT F+SKSPISH+SKVK PT+FLLG QDLRVP +GLQYARAL+EKGV+ K+I+F ND
Sbjct: 725 EDLTLFYSKSPISHVSKVKAPTLFLLGGQDLRVPKFDGLQYARALKEKGVDVKIIMFQND 784
Query: 746 VHGIERPQSDFESFLNIGLWFKKYCK 771
VH ++RPQS++E LNIG+WF KYCK
Sbjct: 785 VHALKRPQSEWECILNIGVWFNKYCK 810
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804842|ref|XP_002870305.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] gi|297316141|gb|EFH46564.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 512/775 (66%), Positives = 628/775 (81%), Gaps = 17/775 (2%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+ AK+V LD+T EEEYA+ SKLL++F NI SIDKAW FNSG+G +QAMF++
Sbjct: 1 MDSCGTDSAKEVHVGLDSTTEEEYATQSKLLKEFINIPSIDKAWIFNSGSG--SQAMFAM 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANKRKKFMLS ISKE+ SV F WAPFPVEMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKRKKFMLSGHISKESNQSVNFHWAPFPVEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ S LEKEFH+PQ VHGSVY DGWFEGISWNSDET +AY+AEEPS KPT
Sbjct: 119 NESPTKFEIWNSSHLEKEFHIPQKVHGSVYVDGWFEGISWNSDETRVAYIAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K G+S DKD SWKG+GDWEE+WGE YAGKRQP+LFVI+++SG+V+ +KGIP+
Sbjct: 179 FDHLGYYKKGNSLDKDIGSWKGEGDWEEEWGEAYAGKRQPALFVIDVDSGKVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
S+SVGQVVW+P + QYLVF GW + RK GIKYCYNRPCA+YA++ + S+ E
Sbjct: 239 SISVGQVVWSPNSNESAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIK---FISD----E 291
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K+ ++E P+ NLT+SISS F PRFS DGKFLVF+SAKS+VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDANE-FPIHNLTKSISSGFCPRFSKDGKFLVFVSAKSAVDSGAHWATESLHRIDWPS 350
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVI VV C + CFPGLY + +L +PWLSDG +++LS+ W S +VI+SV
Sbjct: 351 DGKLPESTNIVDVIQVVNCPDDGCFPGLYVTGLLCDPWLSDGHSLILSTYWRSCRVILSV 410
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV-DKANKGTWSWL 477
N+ SGE+ R +P++S++SW+ LDGDNI+AVSSSPV VP++KYG V D A K +W W
Sbjct: 411 NLLSGEVSRASPSDSDYSWTAFALDGDNIVAVSSSPVSVPEIKYGKKVLDSAGKPSWKWS 470
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 536
N+ +PI RC EKV S LSS QF I+K+P+ VS L +GA+KP E I+VSSS K++ C
Sbjct: 471 NIQNPI-RCSEKVMSGLSSLQFKILKVPISDVSEGLAEGAKKPIEVIYVSSSKFKENGKC 529
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPHS+S S+S+++A+LSS+GYS LIVNYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 530 DPLIAVLHGGPHSISPCSFSRNMAYLSSIGYSQLIVNYRGSLGYGEDALQSLPGKVGSQD 589
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V DVL A+D+ I+MGLA+PSK+TV+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CN+A M
Sbjct: 590 VKDVLAAVDYAIEMGLADPSKITVLGGSHGGFLTTHLIGQAPNKFVAAAARNPVCNIASM 649
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG ++ +TE+PS EDL+RFH SPI+HISK KTPT+FLLG+QDL
Sbjct: 650 VGITDIPDWCFFEAYGD--QNHYTEAPSSEDLSRFHQISPIAHISKAKTPTLFLLGSQDL 707
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+ FPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 708 RVPISNGFQYVRALKEKGVEVKVLAFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566792|ref|NP_193193.2| acylaminoacyl-peptidase [Arabidopsis thaliana] gi|60729672|pir||JC8016 acylaminoacyl-peptidase (EC 3.4.19.1) - Arabidopsis thaliana gi|30466066|dbj|BAC76411.1| acylamino acid-releasing enzyme [Arabidopsis thaliana] gi|332658061|gb|AEE83461.1| acylaminoacyl-peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/775 (65%), Positives = 623/775 (80%), Gaps = 16/775 (2%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G +QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSG--SQAMFAL 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ + E
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 299 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
K+ + + P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W S +VI+SV
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 477
N+ SGE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 536
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K++ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPHSVS S+S+++A+LSS+GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78708638|gb|ABB47613.1| prolyl oligopeptidase family protein, expressed [Oryza sativa Japonica Group] gi|222612829|gb|EEE50961.1| hypothetical protein OsJ_31520 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 991 bits (2562), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/775 (62%), Positives = 599/775 (77%), Gaps = 16/775 (2%)
Query: 3 ASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQ 62
AS+AA K + +D + +EYAS SKLLQ+F I +I AW FNS N ++A+ S+ Q
Sbjct: 70 ASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ 129
Query: 63 PNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 122
+LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++RN E++
Sbjct: 130 TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDD 189
Query: 123 SPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182
SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP KP F+
Sbjct: 190 SPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFN 249
Query: 183 -LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 241
G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKGIP++LS
Sbjct: 250 DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLS 309
Query: 242 VGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSLYKSEAS 295
VGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV + EA
Sbjct: 310 VGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DPFMEEAD 365
Query: 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355
+ L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+S+H+ID
Sbjct: 366 KPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKID 425
Query: 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415
WP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIWGS +VI
Sbjct: 426 WPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 484
Query: 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTW 474
+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V + K W
Sbjct: 485 LSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 544
Query: 475 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 534
W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS KD
Sbjct: 545 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS---WKDS 601
Query: 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
+ P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSLPG +GS
Sbjct: 602 ATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGS 661
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
QDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARNP+CNL+
Sbjct: 662 QDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLS 721
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+FLLGAQ
Sbjct: 722 LMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQ 781
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
DLRVPVSNGLQYAR L+E GVETK+IVFP D+HG+++PQSDFESFLNIG+WFKK+
Sbjct: 782 DLRVPVSNGLQYARTLKEMGVETKIIVFPEDMHGLDKPQSDFESFLNIGVWFKKH 836
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 771 | ||||||
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.984 | 0.993 | 0.632 | 2.9e-270 | |
| UNIPROTKB|E2R7E8 | 734 | APEH "Uncharacterized protein" | 0.495 | 0.520 | 0.339 | 6.3e-89 | |
| MGI|MGI:88041 | 732 | Apeh "acylpeptide hydrolase" [ | 0.495 | 0.521 | 0.341 | 8e-89 | |
| UNIPROTKB|P80227 | 730 | APEH "Acylamino-acid-releasing | 0.546 | 0.576 | 0.331 | 1.3e-88 | |
| RGD|2125 | 732 | Apeh "N-acylaminoacyl-peptide | 0.495 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|P13676 | 732 | Apeh "Acylamino-acid-releasing | 0.495 | 0.521 | 0.339 | 3.5e-88 | |
| UNIPROTKB|I3LEU6 | 725 | I3LEU6 "Uncharacterized protei | 0.546 | 0.580 | 0.323 | 1.7e-86 | |
| UNIPROTKB|P13798 | 732 | APEH "Acylamino-acid-releasing | 0.500 | 0.527 | 0.330 | 4.4e-86 | |
| UNIPROTKB|F1SPS7 | 732 | APEH "Acylamino-acid-releasing | 0.495 | 0.521 | 0.326 | 4.4e-86 | |
| UNIPROTKB|I3LFX8 | 702 | I3LFX8 "Uncharacterized protei | 0.495 | 0.544 | 0.326 | 5.7e-86 |
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2599 (920.0 bits), Expect = 2.9e-270, P = 2.9e-270
Identities = 490/775 (63%), Positives = 594/775 (76%)
Query: 1 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 60
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G+ QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSGS--QAMFAL 58
Query: 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 120
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 121 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 181 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 238
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYXXXXXXXX 298
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 299 XXXXXXXDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358
+ P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXX 418
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 419 XXXXGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 477
GE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCS-C 536
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 537 DPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
DPLI VLHGGPH +GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
RVP+SNG QY RAL+EKGVE KV+VFPND H ++RPQ+D+ESFLNI +WF KYCK
Sbjct: 709 RVPISNGFQYVRALKEKGVEVKVLVFPNDNHPLDRPQTDYESFLNIAVWFNKYCK 763
|
|
| UNIPROTKB|E2R7E8 APEH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 616 (221.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 135/398 (33%), Positives = 211/398 (53%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 346 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFVVDTQMGSVTS 402
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + T W+++
Sbjct: 403 LTAGGSGGSWKLLTIDRDLMVAQFSTPSLPPSLKVGFLPPAGKEQTVLWVSLEEA----- 457
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + S +++ P + + A FEAI + S+ D + P++V+ HGGP
Sbjct: 458 EPISDI--SWAIRVLQPPPEQENVQF---AGLDFEAILLQPSNPPDKTQVPMVVMPHGGP 512
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPGKVG QDV DV A++ V
Sbjct: 513 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGKVGHQDVKDVQFAVEQV 572
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 573 LQEEHFDADRVALMGGSHGGFLSCHLIGQYPETYRACVARNPVINIASMMGSTDIPDWCV 632
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 633 VEAGFPYSSDCL---PDLSVWAEMLDKSPIKYTPQVKTPLLLMLGQEDRRVPFKQGMEYY 689
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + + + +SF+N LW
Sbjct: 690 RALKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 727
|
|
| MGI|MGI:88041 Apeh "acylpeptide hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 8.0e-89, Sum P(2) = 8.0e-89
Identities = 136/398 (34%), Positives = 213/398 (53%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S+ G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSVQRSRQDLFAVDTQTGSVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLPPAGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + I + N+ + A FEAI + S+ D S P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLHPPPDQENV-QYADLDFEAILLQPSNSPDKSQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A+ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVQQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+ M+GTTDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIVSMMGTTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G + + P + L KSPI +I +VKTP + +LG +D RVP GL+Y
Sbjct: 631 VET-GFPYSNDYL--PDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGLEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
AL+ + V +++++P H + + + +SF+N LW
Sbjct: 688 HALKARNVPVRLLLYPKSTHALSEVEVESDSFMNTVLW 725
|
|
| UNIPROTKB|P80227 APEH "Acylamino-acid-releasing enzyme" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
Identities = 147/444 (33%), Positives = 228/444 (51%)
Query: 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 381
PR SPD +V+L S V H L DW T +VDV+P Q E
Sbjct: 303 PRLSPDQCRIVYLQFPSLVP---HQQCGQLCLYDWYTRVTVV----VVDVVPR-QLGEN- 353
Query: 382 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITPAESNFSWSLLT 441
F G+Y S + W +D ++ + G + +T S SW LLT
Sbjct: 354 -FSGIYCSLLPLGCWSADSQRVVFDTAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLT 412
Query: 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 501
+D D ++A S+P P +K G+ + W+++ E + + S +
Sbjct: 413 IDRDLMVAQFSTPNLPPCLKVGFLPPAGMEQEVVWVSLEEA-----EPIPDI--SWSIRV 465
Query: 502 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 561
++ P + A G FEAI + S+ D + P++V+ HGGPH
Sbjct: 466 LQPPPEQEHAQYV-GLD--FEAILIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAM 522
Query: 562 XXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVV 621
+G++ L+VNYRGS GFG++++ SLPG VGSQDV DV A++ V+ + +V ++
Sbjct: 523 LCKMGFAALLVNYRGSTGFGQDSILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALL 582
Query: 622 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 681
GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ D +
Sbjct: 583 GGSHGGFLSCHLIGQYPETYGACVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD 642
Query: 682 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741
P+V + +KSPI + +VKTP + +LG +D RVP G++Y RAL+ + V ++++
Sbjct: 643 -PNV--WSEMLNKSPIKYTPQVKTPVLLMLGQEDRRVPFKQGMEYYRALKARNVPVRLLL 699
Query: 742 FPNDVHGIERPQSDFESFLNIGLW 765
+P H + + + +SF+N +W
Sbjct: 700 YPKSTHSLSEVEVESDSFMNAVIW 723
|
|
| RGD|2125 Apeh "N-acylaminoacyl-peptide hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|P13676 Apeh "Acylamino-acid-releasing enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 135/398 (33%), Positives = 216/398 (54%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
RAL+ + V +++++P H + +++ +SF+N LW
Sbjct: 688 RALKARNVPVRLLLYPKSNHALSEVEAESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LEU6 I3LEU6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 146/452 (32%), Positives = 228/452 (50%)
Query: 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 381
PR SPD +V+L S V H L DW T +S+ +VD++P Q G+
Sbjct: 290 PRLSPDQCRIVYLRFPSLVP---HQQCGQLCLYDWYTR--VTSV--VVDIVPR-QL--GE 339
Query: 382 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRIT------PAE--S 433
F G+Y S + W +D ++ S G + +T P + S
Sbjct: 340 DFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTSLTAGLMVLPLKWGS 399
Query: 434 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSL 493
SW LLT+D D ++ S+P P +K G+ + SW+++ E +
Sbjct: 400 GGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA-----EPFPDI 454
Query: 494 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXX 553
S +++ P + A FEAI + S+ + + P++V+ HGGPH
Sbjct: 455 --SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGPHSSFVT 509
Query: 554 XXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613
+G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V+
Sbjct: 510 AWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHF 569
Query: 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673
+ +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ S
Sbjct: 570 DAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCMVEAGFS 629
Query: 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733
D P + KSPI + +VKTP + +LG +D RVP G++Y R L+ +
Sbjct: 630 YSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYYRVLKAR 686
Query: 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
V +++++P H + + + +SF+N LW
Sbjct: 687 NVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 718
|
|
| UNIPROTKB|P13798 APEH "Acylamino-acid-releasing enzyme" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 133/402 (33%), Positives = 210/402 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 344 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQVGTVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++A S+P P +K G+ + + W+++
Sbjct: 401 LTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLPSAGKEQSVLWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + + + I + N+ + A FEAI + D + P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLQPPPEQENV-QYAGLDFEAILLQPGSPPDKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + S V ++GGSHGGF++ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRACVARNPVINIASMLGSTDIPDWCV 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ D P + KSPI +I +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
RAL+ + V +++++P H + + + +SF+N LW + +
Sbjct: 688 RALKTRNVPVRLLLYPKSTHALSEVEVESDSFMNAVLWLRTH 729
|
|
| UNIPROTKB|F1SPS7 APEH "Acylamino-acid-releasing enzyme" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.4e-86, Sum P(2) = 4.4e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 400
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 401 LTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 455
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 456 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 510
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 630
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 631 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 687
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 688 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 725
|
|
| UNIPROTKB|I3LFX8 I3LFX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
Identities = 130/398 (32%), Positives = 207/398 (52%)
Query: 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 427
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 314 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 370
Query: 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 487
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 371 LTAGGSGGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 425
Query: 488 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 547
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 426 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 480
Query: 548 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 607
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 481 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 540
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 541 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 600
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++Y
Sbjct: 601 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGMEYY 657
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
R L+ + V +++++P H + + + +SF+N LW
Sbjct: 658 RVLKARNVPVRLLLYPKSTHALSEVEVESDSFMNAVLW 695
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q8R146 | APEH_MOUSE | 3, ., 4, ., 1, 9, ., 1 | 0.3337 | 0.8599 | 0.9057 | yes | no |
| P13798 | ACPH_HUMAN | 3, ., 4, ., 1, 9, ., 1 | 0.3144 | 0.8599 | 0.9057 | yes | no |
| P19205 | ACPH_PIG | 3, ., 4, ., 1, 9, ., 1 | 0.3232 | 0.8534 | 0.8989 | yes | no |
| P80227 | ACPH_BOVIN | 3, ., 4, ., 1, 9, ., 1 | 0.3240 | 0.8534 | 0.9013 | yes | no |
| P13676 | ACPH_RAT | 3, ., 4, ., 1, 9, ., 1 | 0.3268 | 0.8599 | 0.9057 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 9e-45 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 7e-33 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 3e-11 | |
| COG0657 | 312 | COG0657, Aes, Esterase/lipase [Lipid metabolism] | 5e-09 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 5e-09 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 6e-09 | |
| COG0412 | 236 | COG0412, COG0412, Dienelactone hydrolase and relat | 5e-08 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 1e-04 | |
| pfam07859 | 207 | pfam07859, Abhydrolase_3, alpha/beta hydrolase fol | 1e-04 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 3e-04 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 3e-04 | |
| pfam01738 | 215 | pfam01738, DLH, Dienelactone hydrolase family | 8e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 9e-45
Identities = 114/467 (24%), Positives = 186/467 (39%), Gaps = 52/467 (11%)
Query: 305 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364
+ + +LT S F DGK + L +S L +G+ SS
Sbjct: 204 GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS 263
Query: 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424
+ V +GD GL + GSS + V
Sbjct: 264 GDDTRGAWAVEGGLDGD---GLLFIAT---------------DGGGSSPLF---RVDDLG 302
Query: 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPIS 484
+ + +DG + SSP P Y Y + K ++S +
Sbjct: 303 GGVEGLSGDDGGVPGFDVDGRKLALAYSSP-TEPPEIYLYDRGEEAK-------LTSSNN 354
Query: 485 RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLH 544
+KVK L + + + L K KK PLIV +H
Sbjct: 355 SGLKKVK-LAEPEPVTYKSNDGETIHGWLYKPPGFDPR--------KKY----PLIVYIH 401
Query: 545 GGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 604
GGP + S++ + L+S GY++L NYRGS G+G E ++ G G D+ D++ A+
Sbjct: 402 GGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 605 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 664
D ++ + L +P ++ + GGS+GG++T + P F AA A + L G +
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724
E G + D ++ +SPI + +KTP + + G +D RVP+
Sbjct: 521 RFDPEENGGGPPE---------DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAE 571
Query: 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
Q AL+ KG +++VFP++ HG RP++ + I WFK++ K
Sbjct: 572 QLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 7e-33
Identities = 60/218 (27%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613
S+S +L L+ GY + + N RGS G+G + G +G + +D + A +++I G
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673
+P ++ + GGS+GG+LT + Q PD F AA A P+ + + + E Y
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVD---WLTYMSDTSP-FTERYME 117
Query: 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALR 731
G ++ + SP S VK P + + G D RVP + L+ AL+
Sbjct: 118 WG-------NPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLVAALQ 170
Query: 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
KG +++FP++ HG +P++ E + + K
Sbjct: 171 AKGKNVLLLIFPDEGHGGGKPRNKREEYARELAFLLKV 208
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-11
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 36/216 (16%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
+V+LHG S S+ L++ GY +L + G G+ D D
Sbjct: 1 VVLLHGAGGSAE--SWRPLAEALAA-GYRVLAPDLPG---HGDSDGPPRTPYSLEDDAAD 54
Query: 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659
+ +D + V +VG S GG + + P++ L L+
Sbjct: 55 LAALLDAL------GLGPVVLVGHSLGGAVALAAAARRPERVAG---------LVLISPP 99
Query: 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719
+ + + + + DL ++++ P + + G D VP
Sbjct: 100 LRDLEE-LLAADAAALLALLRAALLDADLRE--------ALARLTVPVLVIHGEDDPLVP 150
Query: 720 VSNGLQYARALREKGVETKVIVFPNDVHGI--ERPQ 753
+ A AL +++V P H E P+
Sbjct: 151 PEAARRLAEALPGA----ELVVLPGAGHLPHLEHPE 182
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 5e-09
Identities = 51/229 (22%), Positives = 87/229 (37%), Gaps = 27/229 (11%)
Query: 535 SCDPLIVVLHGGPH-SVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 592
+ P+++ LHGG SL ++ +A L++ G ++ V+YR + P
Sbjct: 77 ATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLA-----------PEHP 125
Query: 593 GSQDVNDVLTAIDHVIDMGL---ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+ D A + +PS++ V G S GG L L A D+ + A
Sbjct: 126 FPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQV 185
Query: 650 LC--NLALMVGTTDIPDWCYVESYGS-KGKDSFTES--PSVEDLTRFHSKSPIS--HISK 702
L L L +P + + + F + + D SP++ +S
Sbjct: 186 LISPLLDLTSSAASLPGYGEADLLDAAAILAWFADLYLGAAPDREDPE-ASPLASDDLSG 244
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751
+ PT+ D G YA LR GV ++ V+P +HG +
Sbjct: 245 LP-PTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHGFDL 290
|
Length = 312 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-09
Identities = 36/210 (17%), Positives = 63/210 (30%), Gaps = 65/210 (30%)
Query: 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598
L+V+LHG +Y+ L+S GY+++ V+Y G S
Sbjct: 1 LVVLLHGA--GGDPEAYAPLARALASRGYNVVAVDYPGHGA--------------SLGAP 44
Query: 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
D + V+ +P ++ +VG S GG + L + P A
Sbjct: 45 DA----EAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAG--------- 91
Query: 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 718
+ ++K+ P + + G +D V
Sbjct: 92 ---------------------------------DPPDALDDLAKLTVPVLIIHGTRDGVV 118
Query: 719 PVSNGLQYARALREKGVETKVIVFPNDVHG 748
P A AL +++V H
Sbjct: 119 PPEEAEALAAALPGP---AELVVIEGAGHS 145
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-09
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 532 KDCSCDPLIVVLHG-GPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
K D +L+ G ++SL+ +S S G ++ N RG FG E Q+
Sbjct: 414 KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGM 473
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+ +D + + +I G+ +P K+ + GGS+GG L + Q P+ F AA P
Sbjct: 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533
Query: 650 LCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT--P 706
L + M+ + ++ YG+ + P ED + SP ++ + P
Sbjct: 534 LLD---MLRYHLLTAGSSWIAEYGN------PDDP--EDRAFLLAYSPYHNLKPGQKYPP 582
Query: 707 TIFLLGAQDLRVPVSNGLQYARALREKGVET 737
T+ D RV ++ ++A L+E G
Sbjct: 583 TLITTSLHDDRVHPAHARKFAAKLQEVGAPV 613
|
Length = 648 |
| >gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 48/220 (21%), Positives = 81/220 (36%), Gaps = 54/220 (24%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGF-------GEEALQSLP 589
P ++VLH L+ + + +A L+ GY +L + G G E L
Sbjct: 28 PGVIVLHEIFG---LNPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLV 84
Query: 590 GKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
+V +V D+ A+D++ +P ++ VVG GG L + AA R
Sbjct: 85 ERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLA-----------LLAATRA 133
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
P A+ + YG D + K+K P +
Sbjct: 134 PEVKAAV----------AF---YGGLIAD------------------DTADAPKIKVPVL 162
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
L +D +P ++ A AL + GV+ + ++P HG
Sbjct: 163 LHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHG 202
|
Length = 236 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (103), Expect = 1e-04
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P +V+LHG P S S+ + + Y ++ + RG G G S
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRG---HG---RSDPAGYSLSAY 74
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+D+ +D + KV +VG S GG + L + PD+ P L+
Sbjct: 75 ADDLAALLDAL------GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLL 128
Query: 657 VGTTDIPDW 665
P
Sbjct: 129 EAALRQPAG 137
|
Length = 282 |
| >gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 40/174 (22%), Positives = 60/174 (34%), Gaps = 40/174 (22%)
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN---- 648
+ D A+ +H ++G A+PS++ V G S GG L VA AR+
Sbjct: 49 IEDAYAALRWLAEHAWELG-ADPSRIAVAGDSAGGNLAAA---------VALRARDEGLP 98
Query: 649 -PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
P + + G + ESY ++ R P
Sbjct: 99 LPAGQVLIYPGLDLRTE---SESYNEYADGPLLTRDDMDWFWR-LYLPGAD----RDDPL 150
Query: 708 IFLLGAQDLR-VP------------VSNGLQYARALREKGVETKVIVFPNDVHG 748
L A DL +P G YA LR GVE +++ +P +HG
Sbjct: 151 ASPLFAADLSGLPPALVVVAEFDPLRDEGEAYAERLRAAGVEVELVEYPGMIHG 204
|
This catalytic domain is found in a very wide range of enzymes. Length = 207 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 656
D + A H++ G +P ++ +GGS GG L + APD F A+ P + L M
Sbjct: 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTM 568
Query: 657 ------VGTTDIPDW---------CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
+ T+ +W Y++SY SP ++
Sbjct: 569 LDPSLPLTVTEWDEWGNPLDPEYYDYIKSY-----------------------SPYDNVE 605
Query: 702 KVKTPTIF-LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P I G D RV ++ LRE + ++ ++
Sbjct: 606 AQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDA 653
|
Length = 682 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+PL+V +G + + +S S L G+ IV+ RG G++ + GK +
Sbjct: 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYED--GKFLKKK 502
Query: 597 --VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
ND L A D ++ +G +PS +GGS GG L I Q P+ F A+ P ++
Sbjct: 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562
Query: 655 LMVGTTDIP 663
+ IP
Sbjct: 563 TTMLDESIP 571
|
Length = 686 |
| >gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 48/227 (21%), Positives = 72/227 (31%), Gaps = 56/227 (24%)
Query: 538 PLIVVLH--GGPHSVSLSSYSKSLAFLSSVGYSLLIVN--YRGSLGFG-----EEALQSL 588
P++VV G ++ A L+ GY L + R L A++ L
Sbjct: 15 PVVVVFQEIFGVNNF----IRDIAARLAEEGYVALCPDLYARQGLDPTDPREAARAMRGL 70
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
K V+D+L AI+++ + KV VVG GG L AARN
Sbjct: 71 LSKRMEAVVDDLLAAINYLRGQPYVDTKKVGVVGFCLGGRLA-----------FLLAARN 119
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ GT P P+ +K P +
Sbjct: 120 GVDAAVSFYGTGPEP--------------------------------PLDEAPAIKAPIL 147
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
G +D VP ALR V+ ++ V+P H +
Sbjct: 148 AHFGEEDPFVPAEARDLLEEALRAANVDHELHVYPGAGHAFAADGRE 194
|
Length = 215 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.97 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.97 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.96 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.96 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.95 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.95 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.94 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.93 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.92 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.91 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.88 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.88 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.88 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.88 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.87 | |
| PRK10566 | 249 | esterase; Provisional | 99.87 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.87 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.87 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.87 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.86 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.85 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.84 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.84 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.83 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.83 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.83 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.81 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.81 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.81 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.8 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.8 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.79 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.79 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.77 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.76 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.76 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.76 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.74 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.73 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.72 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.72 | |
| PLN02511 | 388 | hydrolase | 99.72 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.71 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.71 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.71 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.71 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.7 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.7 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.7 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.7 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.69 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.69 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.69 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.68 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.68 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.68 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.67 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.66 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.66 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.66 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.66 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.65 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.65 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.65 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.63 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.63 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.63 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.63 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.63 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.63 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.62 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.62 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.61 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.6 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.59 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.59 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.59 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.59 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.58 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.58 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.58 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.58 | |
| PLN00021 | 313 | chlorophyllase | 99.58 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.57 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.57 | |
| PLN02578 | 354 | hydrolase | 99.57 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.56 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.56 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.56 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.55 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.55 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.55 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.54 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.54 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.54 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.54 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.53 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.52 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.5 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.48 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 99.47 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 99.46 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.46 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.45 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.44 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 99.41 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.38 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.37 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.35 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.32 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 99.32 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.29 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.29 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.29 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.29 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.28 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.28 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.26 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.24 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.23 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.22 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.22 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 99.22 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.22 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.21 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.21 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.21 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 99.19 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 99.18 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.16 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.15 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.14 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 99.14 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.13 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.13 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.13 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.12 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.12 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.12 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.11 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 99.1 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 99.09 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.05 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.05 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 99.05 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.04 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.03 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.03 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.03 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.02 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.02 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.02 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 99.01 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.01 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.01 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.01 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.99 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.98 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.95 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.95 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 98.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.94 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.91 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.9 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.9 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.89 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.89 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.89 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.88 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.87 | |
| PTZ00421 | 493 | coronin; Provisional | 98.85 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.85 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.85 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.85 | |
| PTZ00421 | 493 | coronin; Provisional | 98.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.84 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.84 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.83 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.83 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.83 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.82 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.82 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.8 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.8 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.8 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 98.79 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.78 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.76 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.76 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.75 | |
| PTZ00420 | 568 | coronin; Provisional | 98.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.73 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.71 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.7 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.67 | |
| PTZ00420 | 568 | coronin; Provisional | 98.67 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.65 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.64 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 98.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.63 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.62 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.6 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.58 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.58 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.58 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.54 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.54 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.51 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.5 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.5 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 98.5 | |
| PRK10115 | 686 | protease 2; Provisional | 98.49 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.48 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 98.48 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.48 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.44 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 98.42 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.39 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.39 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.37 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 98.36 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.36 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.34 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.33 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 98.33 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.32 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.3 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.3 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.29 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.28 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.27 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.26 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.26 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.26 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.26 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 98.25 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.23 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.22 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.22 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 98.19 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.14 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 98.12 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 98.12 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 98.11 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.11 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.11 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 98.11 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 98.09 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.08 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 98.08 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.06 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 98.02 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.02 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 98.01 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.01 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.99 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.95 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.93 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.92 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.91 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.91 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 97.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.89 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.89 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.88 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.86 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.85 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.84 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.8 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.78 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.76 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.75 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.75 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.75 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 97.71 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.68 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 97.68 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.68 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.67 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.67 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 97.67 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.65 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.63 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.63 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.62 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.61 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.61 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.59 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.58 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.57 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.56 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.56 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.54 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.54 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 97.51 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.51 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.5 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.5 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.49 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.49 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.48 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.47 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.45 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.44 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.44 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.41 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.41 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.3 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.28 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.27 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.27 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.27 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.26 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.25 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.25 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.24 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.24 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.24 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 97.21 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.18 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 97.18 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.14 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.14 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.1 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.1 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 97.09 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.08 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 97.07 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 97.06 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.05 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.04 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.02 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.99 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.98 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.97 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.93 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 96.93 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.92 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 96.9 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 96.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 96.88 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.86 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.84 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.76 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.72 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.68 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.68 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.62 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.62 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.57 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.54 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.54 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.54 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.53 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.52 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.5 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.49 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 96.49 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.43 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.41 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.36 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.32 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 96.31 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 96.27 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.24 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 96.22 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.21 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.18 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.16 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.11 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.97 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.97 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 95.96 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.95 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.92 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.91 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.82 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 95.81 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.75 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 95.68 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.62 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 95.6 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 95.59 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 95.57 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.45 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.4 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 95.21 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 95.19 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 95.18 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.15 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.12 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 95.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.93 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 94.75 | |
| PLN02209 | 437 | serine carboxypeptidase | 94.67 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 94.61 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.53 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.52 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.48 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 94.46 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 94.4 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 94.38 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.31 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 94.3 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 94.17 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 94.15 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 94.12 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 94.05 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 93.94 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.9 | |
| KOG1551 | 371 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 93.5 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 93.44 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 93.43 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 93.36 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.35 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 93.29 | |
| KOG2521 | 350 | consensus Uncharacterized conserved protein [Funct | 93.26 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 93.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 92.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.89 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 92.74 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.72 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.71 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 92.58 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 92.57 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.57 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 92.51 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 92.38 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 92.31 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 92.26 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 92.19 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 92.01 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 91.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 91.84 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 91.62 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 91.57 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 91.56 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 91.56 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 91.49 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 91.47 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 91.21 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 91.21 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 91.1 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 90.83 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 90.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 90.82 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.63 | |
| PLN02454 | 414 | triacylglycerol lipase | 90.45 | |
| KOG1520 | 376 | consensus Predicted alkaloid synthase/Surface muci | 90.17 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 89.92 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 89.91 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 89.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 89.51 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 89.5 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 89.48 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 89.41 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=435.63 Aligned_cols=608 Identities=22% Similarity=0.306 Sum_probs=423.7
Q ss_pred HhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe
Q 004141 33 DFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 33 ~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
.+..+..+....+ +++|..++|..+..+.........+|+.+... ...++.. ..+..+.|||||+.
T Consensus 8 ~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~ 73 (620)
T COG1506 8 DLLALARVSDPRV----SPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSV 73 (620)
T ss_pred HHHhhhcccCccc----CCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCE
Confidence 4445555554444 45789999998887777778888899854321 1222222 56888999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCC
Q 004141 113 LLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSD 192 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~ 192 (771)
++|.++..+...++|++..++ .+......+ ....|||+|+.+++.......+.. +.
T Consensus 74 ~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~~---------~~-- 129 (620)
T COG1506 74 LAFVSTDGGRVAQLYLVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKRD---------GG-- 129 (620)
T ss_pred EEEEeccCCCcceEEEEecCC---ceeeeeccc----------ccceeCCCCCeEEEEecccccccC---------Cc--
Confidence 999985554567888887434 222223333 488899999999994332211100 00
Q ss_pred ccCCCCCC-cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 193 KDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 193 ~~~~~~~~-~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
+...... .+.+..+ | ....+++++|..+ ....+ ......+..+.|.+|++. ++.........
T Consensus 130 -~~~~~~~~~~~~~~~-g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--- 192 (620)
T COG1506 130 -DHLFVDRLPVWFDGR-G-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDAD--- 192 (620)
T ss_pred -eeeeecccceeecCC-C-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeeccccC---
Confidence 0000000 1111111 1 2468999999887 44444 455556666777777775 55555332200
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
..-...+.... .++....++.....+..+.|.+||+.+++....... .......+
T Consensus 193 -----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~---~~~~~~~~ 247 (620)
T COG1506 193 -----PWVTNLYVLIE-----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR---GLAEGDFI 247 (620)
T ss_pred -----CceEeeEEEec-----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc---CccccceE
Confidence 00112333332 467788888888889999999999999999887631 11234556
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC
Q 004141 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~ 430 (771)
++++...+..... ..... . .. ......+.-++..++|.... .+...++.++...+....+..
T Consensus 248 ~~~~~~~~~~d~~-------~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~ 310 (620)
T COG1506 248 LLLDGELGEVDGD-------LSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSG 310 (620)
T ss_pred EEEecccccccee-------eccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecC
Confidence 6666222222110 00000 0 00 01111122355556666665 666777777754554444444
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc-eeeeecccCc
Q 004141 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGV 509 (771)
Q Consensus 431 ~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ 509 (771)
... ....|+.+++.+++..++++.|+++|+.+.. .. ..+ +.. .+ ..+....+ ..+
T Consensus 311 ~~~--~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~~-~~--~~~--~~~------~~----~~~~~~~~~~~e------- 366 (620)
T COG1506 311 DDG--GVPGFDVDGRKLALAYSSPTEPPEIYLYDRG-EE--AKL--TSS------NN----SGLKKVKLAEPE------- 366 (620)
T ss_pred CCc--eEEEEeeCCCEEEEEecCCCCccceEEEcCC-Cc--eEE--eec------cc----ccccccccCCce-------
Confidence 433 4567777999999999999999999998751 11 111 000 00 00111111 111
Q ss_pred ccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 510 SANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 510 ~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
.+.+...+|.++++|++.|.++++.+++|+||++||||.......+...++.|+.+||+|+.+||||+.|||.+|.+...
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~ 446 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIR 446 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhh
Confidence 12456668999999999999988888899999999999887777888899999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
++++..+.+|+.++++++.+.+.+|++|++|+|+|+||+++++++.+.| .|+++++..+.+++..+....+...+....
T Consensus 447 ~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (620)
T COG1506 447 GDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPE 525 (620)
T ss_pred hccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHH
Confidence 9999999999999999999999999999999999999999999999876 899999999988887776665554333222
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.... .+.+ +.+.+...||+.+++++++|+|||||+.|.+||++|+++|+++|+.+|+++++++||+++|++
T Consensus 526 ~~~~--------~~~~-~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~ 596 (620)
T COG1506 526 ENGG--------GPPE-DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGF 596 (620)
T ss_pred HhCC--------Cccc-ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCC
Confidence 2211 1112 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHhhC
Q 004141 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
..+++....+.++++||+++|+
T Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 597 SRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred CCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-42 Score=386.87 Aligned_cols=527 Identities=14% Similarity=0.124 Sum_probs=359.4
Q ss_pred ceEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....|||||++|||..+..+ +..++++++ .+|... ...+.... ..++|++||+.|+|.......
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~-- 195 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVT-- 195 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCC--
Confidence 456789999999999977653 344566776 444310 11111111 368999999999998764210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCC-CCccceEEEec-CCCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPK-SLSVGQVVWAP-LNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~-~~~~~~~~wsp-Dg~~~ 254 (771)
....+||++++.++ +.+.+ ... +....-..|.+ |++.
T Consensus 196 ------------------------------------~~~~~v~~h~lgt~~~~d~lv--~~e~~~~~~~~~~~s~d~~~- 236 (686)
T PRK10115 196 ------------------------------------LLPYQVWRHTIGTPASQDELV--YEEKDDTFYVSLHKTTSKHY- 236 (686)
T ss_pred ------------------------------------CCCCEEEEEECCCChhHCeEE--EeeCCCCEEEEEEEcCCCCE-
Confidence 02368999999988 44445 221 11122234545 8887
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f 333 (771)
++..+.. +..+.+++++.+. ..++.+.+.... .....+ ...+..+++
T Consensus 237 ---l~i~~~~------------~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~--~~~~~~ly~ 284 (686)
T PRK10115 237 ---VVIHLAS------------ATTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYSL--DHYQHRFYL 284 (686)
T ss_pred ---EEEEEEC------------CccccEEEEECcC---------------CCCCceEEEECCCCCEEEE--EeCCCEEEE
Confidence 7654422 2234677777421 233333333222 222222 234567777
Q ss_pred EecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
.++.+ ....+|..+++.. ++.+.+.... ++ ..+..+.++ ++.|+++...++.
T Consensus 285 ~tn~~-------~~~~~l~~~~~~~~~~~~~l~~~~-----------~~-------~~i~~~~~~--~~~l~~~~~~~g~ 337 (686)
T PRK10115 285 RSNRH-------GKNFGLYRTRVRDEQQWEELIPPR-----------EN-------IMLEGFTLF--TDWLVVEERQRGL 337 (686)
T ss_pred EEcCC-------CCCceEEEecCCCcccCeEEECCC-----------CC-------CEEEEEEEE--CCEEEEEEEeCCE
Confidence 77664 2346688888763 2211111110 00 012334555 5589999989999
Q ss_pred eEEEEEECCCCcEEEecC-CCCCceeeEEe--ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCC-CCCCch
Q 004141 413 QVIISVNVSSGELLRITP-AESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP-ISRCPE 488 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s--~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 488 (771)
..|+.+++.++++..|.. .........++ ++++.+++..+++++|+++|.+++.+++ ++.++.+ ...
T Consensus 338 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~------~~~l~~~~~~~--- 408 (686)
T PRK10115 338 TSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE------RRVLKQTEVPG--- 408 (686)
T ss_pred EEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc------EEEEEecCCCC---
Confidence 999999988778887763 22222222333 5677899999999999999999976542 1112111 111
Q ss_pred hhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE
Q 004141 489 KVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS 568 (771)
Q Consensus 489 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~ 568 (771)
+....+....+ .+.+.||.+|+++++.+++....++.|+||++|||++......|....+.|+++||+
T Consensus 409 -----~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~ 476 (686)
T PRK10115 409 -----FDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFV 476 (686)
T ss_pred -----cCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcE
Confidence 11112233333 456778999999766655433456779999999999988888898888999999999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC
Q 004141 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648 (771)
Q Consensus 569 Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 648 (771)
|+.+|+||++++|+.|.+......+..+++|+++++++|++++.+|++|++++|.|+||+++.+++.++|++|+|+|+..
T Consensus 477 v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~v 556 (686)
T PRK10115 477 YAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQV 556 (686)
T ss_pred EEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecC
Confidence 99999999999999999877767777889999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhcCCCCC-cchhhhhccCCCCccCCCCCC-hhhHHHHhhcCcccccCCCCCc-EEEEeeCCCCccCcHHHHH
Q 004141 649 PLCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 649 p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~lii~G~~D~~vp~~~~~~ 725 (771)
|++|+..++...+++ .+...+.+|. |. .+..+.+...||+.++.+++.| +||+||.+|.+||+.++.+
T Consensus 557 p~~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k 627 (686)
T PRK10115 557 PFVDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAK 627 (686)
T ss_pred CchhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHH
Confidence 999998765443333 2333344443 33 3445566789999999999999 6778999999999999999
Q ss_pred HHHHHHhCCCCEEEEEe---CCCCccCCCCCChHHHHHH---HHHHHHHhh
Q 004141 726 YARALREKGVETKVIVF---PNDVHGIERPQSDFESFLN---IGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~---~~~~H~~~~~~~~~~~~~~---i~~fl~~~L 770 (771)
++.+|++.+++++++++ +++||+. ..++...+++ ...|+-..+
T Consensus 628 ~~a~Lr~~~~~~~~vl~~~~~~~GHg~--~~~r~~~~~~~A~~~aFl~~~~ 676 (686)
T PRK10115 628 WVAKLRELKTDDHLLLLCTDMDSGHGG--KSGRFKSYEGVAMEYAFLIALA 676 (686)
T ss_pred HHHHHHhcCCCCceEEEEecCCCCCCC--CcCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888888 9999983 3333344443 466665544
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=324.07 Aligned_cols=613 Identities=18% Similarity=0.231 Sum_probs=384.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..++|.+.+.+..+....-+.......+++++.... +.. +...+........|||.|.+++|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE-KLH-----PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC-ccc-----CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 345677777776654333344444555555554443 011 1111123357899999999999998764 22
Q ss_pred EEe-cCCcceEEEec------CCcccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 128 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~------~~~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.-. ......+++.- -.+..+++|.++.+ ....|||||..++|................... ......
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~-~~yp~~-- 248 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDD-DQYPKS-- 248 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccceEEecccccc-ccCccc--
Confidence 111 11111222211 12334455554433 366799999999998765543210000000000 000000
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
..+.|... |. ......|+++|........+. .......+....|.-+.+ +.++-
T Consensus 249 --~~~~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----~~~~~----------- 306 (755)
T KOG2100|consen 249 --TNFHYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEK-----VLVVW----------- 306 (755)
T ss_pred --ceeecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCcc-----EEEEE-----------
Confidence 00111111 11 123457888885544333311 011123455667877754 44332
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcc----eecCCC---CccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----VNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
.+|.+.+-...+.. ..+.+ +....+ ......|.++.|+....+...... +
T Consensus 307 --~~r~~~~~~~~~cd---------------~~~~~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~--- 363 (755)
T KOG2100|consen 307 --TNREQNISVETLCD---------------TPGICRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G--- 363 (755)
T ss_pred --EccCCCeeeeEEec---------------CcccceeeEeccccccccccccccceEeecCCceeEEEeecc---C---
Confidence 12222222222210 00100 001111 011135889999865555544431 2
Q ss_pred ccccceeeecCCC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCC
Q 004141 347 ATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~d~~tg 423 (771)
.-.++..+....+ ..+.++.+.+.+..+ +.|..|+++++|.+.. .+..+||.+++.++
T Consensus 364 ~~~hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 364 GYNHIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred CEEEEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 1355666666555 555666666654422 2455788899998886 46778999999988
Q ss_pred cEEEecCCCC----CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcc
Q 004141 424 ELLRITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF 499 (771)
Q Consensus 424 ~~~~l~~~~~----~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 499 (771)
.+..++.... ......++...+.+++.++.|..|.. .+-...... .. .|..| +.+..+...+....+
T Consensus 425 ~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~-~~~~~~~~~-~~--~~~~L-----e~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 TVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDG-QLTRHSSKN-SK--TIVVL-----ETNEELKKTIENVAL 495 (755)
T ss_pred ccccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcc-eeecccccc-ce--EEEEe-----ccChhhHHHhhcccC
Confidence 8887775543 23334566678889999999999875 222222221 11 12222 234444444432221
Q ss_pred eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCC
Q 004141 500 SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRG 576 (771)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vv~~d~rG 576 (771)
|..+. ....-+|....+.++.|+++++.+++|++|.+||||.+.... ........+...|++|+.+|+||
T Consensus 496 -----p~~~~--~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RG 568 (755)
T KOG2100|consen 496 -----PIVEF--GKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRG 568 (755)
T ss_pred -----Cccee--EEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCC
Confidence 21111 112227888999999999999999999999999999743221 12223445678999999999999
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC-CceeEEEecCCccchhh
Q 004141 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLAL 655 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p-~~~~~~v~~~p~~~~~~ 655 (771)
++++|..++..+++++|..+++|+..+++++++.+.+|.+||+|+|+|+||+++++++...+ +.|+|+++.+|+.++.
T Consensus 569 s~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~- 647 (755)
T KOG2100|consen 569 SGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL- 647 (755)
T ss_pred cCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-
Confidence 99999999999999999999999999999999999999999999999999999999999987 7889999999999987
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcE-EEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
+....... ++++.+. ++...|.+.++...+..++.|. |++||+.|..|+.+++.+++++|+.+|
T Consensus 648 ~yds~~te--------------rymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~g 712 (755)
T KOG2100|consen 648 YYDSTYTE--------------RYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAG 712 (755)
T ss_pred eecccccH--------------hhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCC
Confidence 43333222 2233333 2223388889999999998775 999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++++++||++.|++.........+..+..||...+
T Consensus 713 v~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~ 748 (755)
T KOG2100|consen 713 VPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCF 748 (755)
T ss_pred CceEEEEeCCCCcccccccchHHHHHHHHHHHHHHc
Confidence 999999999999999988877789999999998543
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=275.26 Aligned_cols=339 Identities=19% Similarity=0.268 Sum_probs=259.6
Q ss_pred CEEEEEeeeCC--eeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeee
Q 004141 401 CTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 477 (771)
Q Consensus 401 ~~l~~~~~~~~--~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 477 (771)
+.+||....+. ..+||.+... .|++.+++.....+. ..++.+=+.++...++...|+++.++++..+++.
T Consensus 516 ~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~-~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~------ 588 (867)
T KOG2281|consen 516 KLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHS-CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEND------ 588 (867)
T ss_pred eEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccc-hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccC------
Confidence 34556655444 3479999887 899999998765333 3466666677788899999999999998765411
Q ss_pred ccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cch
Q 004141 478 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYS 556 (771)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~ 556 (771)
++.....-..-+++.......-.|.+ -+.+....|..+.|.+|+|.++++.+++|+|++++|||...... .|.
T Consensus 589 ----~l~~q~~~~~~l~~~~~~~Pdy~p~e--if~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfk 662 (867)
T KOG2281|consen 589 ----PLPKQVSFWAILVSGAPPPPDYVPPE--IFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFK 662 (867)
T ss_pred ----cccchhhHHHHHHhcCCCCCccCChh--heeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecccc
Confidence 11100000111112211111111211 12345567899999999999999999999999999999754322 222
Q ss_pred ----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHH
Q 004141 557 ----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTT 631 (771)
Q Consensus 557 ----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~ 631 (771)
..+..|+++||.|+.+|-||+.-.|-.|...+..+.|..+++|...++++|.++. .+|.+||+|-|+|+||++++
T Consensus 663 gi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSl 742 (867)
T KOG2281|consen 663 GIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSL 742 (867)
T ss_pred ceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHH
Confidence 2355789999999999999999889999888899999999999999999999985 79999999999999999999
Q ss_pred HHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC---CcEE
Q 004141 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TPTI 708 (771)
Q Consensus 632 ~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P~l 708 (771)
+.+.++|+.|+++|+.+|+.++..+ ......+|++.|. .+...|...|-..++.++. -.+|
T Consensus 743 m~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnRLl 806 (867)
T KOG2281|consen 743 MGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNRLL 806 (867)
T ss_pred HHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCceEE
Confidence 9999999999999999999875433 2223456666664 3445666667777776664 4599
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++||--|++|...+.-.+..+|.++|++.++++||++.|++..++.....-.+++.|+.+
T Consensus 807 LvHGliDENVHF~Hts~Lvs~lvkagKpyeL~IfP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 807 LVHGLIDENVHFAHTSRLVSALVKAGKPYELQIFPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred EEecccccchhhhhHHHHHHHHHhCCCceEEEEccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999887777889999876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=264.62 Aligned_cols=288 Identities=16% Similarity=0.203 Sum_probs=216.5
Q ss_pred HHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEE
Q 004141 26 SLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVV 105 (771)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~ 105 (771)
-+..+|+.++..|.+. +++|+|+....+...+...+.||+++. +++++++||... .....|+
T Consensus 130 ~~D~~~~~~tg~~g~~-----------~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~ 191 (428)
T PRK01029 130 AADTIHYALTGVPGIS-----------SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPT 191 (428)
T ss_pred HHHHHHHHHcCCCccc-----------cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccce
Confidence 3445667887877776 468899988777666666789999775 556788888765 4567899
Q ss_pred eCCCCCe--EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 106 PSPSGSK--LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 106 ~SPdG~~--la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|||||++ ++|++.+. +..++|+++ .+++.++++...... ..++|||||++|||++...
T Consensus 192 wSPDG~~~~~~y~S~~~-g~~~I~~~~l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~-------- 252 (428)
T PRK01029 192 WMHIGSGFPYLYVSYKL-GVPKIFLGSLENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY-------- 252 (428)
T ss_pred EccCCCceEEEEEEccC-CCceEEEEECCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC--------
Confidence 9999998 55688766 678999999 778888888865544 4799999999999987532
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE--EEccC---CceeeccCCCCC-CccceEEEecCCCCCcc
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~---~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
+..++|+ +++.+ ++.+++ +... .....+.|||||+.
T Consensus 253 ---------------------------------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~--- 294 (428)
T PRK01029 253 ---------------------------------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR--- 294 (428)
T ss_pred ---------------------------------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE---
Confidence 2235555 45554 466777 4433 24468999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+++..+ ..+||+++++. .+++.++|+........|.|||||++|+|.+.
T Consensus 295 -Laf~s~~~g------------~~~ly~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 295 -LVFVSNKDG------------RPRIYIMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred -EEEEECCCC------------CceEEEEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 999985322 23799998731 23557888877667789999999999999987
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.. | ..+|+++|+.+++.++++.... ....+.|+|||+.|+|.+...+...||
T Consensus 347 ~~----g----~~~I~v~dl~~g~~~~Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 347 IK----G----VRQICVYDLATGRDYQLTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred CC----C----CcEEEEEECCCCCeEEccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEE
Confidence 64 2 4689999999988766653310 234678999999999988877778999
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecC
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDG 444 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg 444 (771)
.+|+++++.++|+...+....+.|+|-.
T Consensus 399 ~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCCEEEeecCCCcccCceecCCC
Confidence 9999999999998766655667887643
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=251.83 Aligned_cols=206 Identities=34% Similarity=0.583 Sum_probs=174.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~ 633 (771)
.|+...++|+++||+|+.+||||++++|..+.......++..+++|+.++++++++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35677889999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HhhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhhccCCCCccCCCCCChhhHHHHhhcCcccccCC--CCCcEEE
Q 004141 634 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIF 709 (771)
Q Consensus 634 a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~li 709 (771)
+.++|++|+++|+.+|+.++..+....+. +.. ...++. .......+...+|+..+.+ +++|+||
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~P~li 149 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLEYGD----------PWDNPEFYRELSPISPADNVQIKPPVLI 149 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHHHSS----------TTTSHHHHHHHHHGGGGGGCGGGSEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccccCc----------cchhhhhhhhhccccccccccCCCCEEE
Confidence 99999999999999999987766544333 111 011111 1234566777788888888 8899999
Q ss_pred EeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 710 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+||++|.+||++++.+++++|++.|++++++++|+++|.+..++...+++.++++||+++|+
T Consensus 150 ~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 150 IHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp EEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999998888888999999999999986
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=237.58 Aligned_cols=345 Identities=17% Similarity=0.218 Sum_probs=264.4
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCC
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKAN 470 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~ 470 (771)
..+.+.+| +|+...-.+...++...+...-..+.|.... +.......+.+|+.+++..++.+.|+++|+.++.+.+
T Consensus 300 e~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e- 376 (648)
T COG1505 300 EQVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE- 376 (648)
T ss_pred eeeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-
Confidence 34555555 3555444444445666666554444454332 2222223445889999999999999999999987654
Q ss_pred CceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 004141 471 KGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 550 (771)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~ 550 (771)
.. .|-++..++ ....+++.+. ..++.||.+|+++++. ++.+.+ +.|++|+-+||....
T Consensus 377 Le-----~ik~~p~~F--------Da~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vs 434 (648)
T COG1505 377 LE-----VIREQPVQF--------DADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNIS 434 (648)
T ss_pred eh-----hhhhccCCc--------CccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEeccccccc
Confidence 11 111111111 1223333332 4567789999999998 765555 889999999999988
Q ss_pred CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHH
Q 004141 551 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLT 630 (771)
Q Consensus 551 ~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a 630 (771)
..+.|......+.++|.+.++.|.||.++||..|++.......++.++|+.++++.|++++...|+++++.|.|.||.++
T Consensus 435 ltP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLv 514 (648)
T COG1505 435 LTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLV 514 (648)
T ss_pred cCCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEE
Confidence 88899988888899999999999999999999999888777777789999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEE
Q 004141 631 THLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTI 708 (771)
Q Consensus 631 ~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~l 708 (771)
..++.++|++|.|+|+..|++||..+.....-..|. ..|| ....+++...+.++||+++++.-+ +|+|
T Consensus 515 g~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~--~EYG--------~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~L 584 (648)
T COG1505 515 GAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWI--AEYG--------NPDDPEDRAFLLAYSPYHNLKPGQKYPPTL 584 (648)
T ss_pred EeeeccChhhhCceeeccchhhhhhhcccccchhhH--hhcC--------CCCCHHHHHHHHhcCchhcCCccccCCCeE
Confidence 999999999999999999999998776554433342 3333 344578888899999999887633 7899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-HHHHHHHHHHHHHhhC
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-FESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-~~~~~~i~~fl~~~L~ 771 (771)
|..+.+|.+|.|.|++.|+.+|++.+.++-+.+--++||+-..+... ......+..||.+.|.
T Consensus 585 ITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 585 ITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred EEcccccccccchHHHHHHHHHHhcCCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999888888999987766554 4455678889998874
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-27 Score=251.96 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=211.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+..-. ++|+|+....+ +.+.+.||+++. ++.+.+++|... .....|
T Consensus 146 ~~~d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p 204 (429)
T PRK03629 146 TASDEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSP 204 (429)
T ss_pred HHHHHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----Cceeee
Confidence 345567888887776653 56788876543 345789999876 444667787665 457899
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|+....
T Consensus 205 ~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~--------- 264 (429)
T PRK03629 205 AWSPDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT--------- 264 (429)
T ss_pred EEcCCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC---------
Confidence 9999999999998654 567788877 666666666554333 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 265 --------------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~ 306 (429)
T PRK03629 265 --------------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSD 306 (429)
T ss_pred --------------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeC
Confidence 235799999999999999 555556788999999999 999984
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+|+ ++++.++|+........|.|||||++|+|.+... |
T Consensus 307 ~~g------------~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~----g 353 (429)
T PRK03629 307 QAG------------RPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G 353 (429)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC----C
Confidence 321 238999998 7788888887666667899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|.+..++...|+.++++++
T Consensus 354 ----~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~ 408 (429)
T PRK03629 354 ----QQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR 408 (429)
T ss_pred ----CceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 357999999888765554221 1236789999999999998777778999999877
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++|+...+....+.|+|
T Consensus 409 ~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CeEECccCCCCcCCcccCC
Confidence 8888876444445566665
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=226.12 Aligned_cols=535 Identities=17% Similarity=0.156 Sum_probs=338.9
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEE-e-cCCc-ceEEEecCCcccc-cccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFEL-W-SQSQ-LEKEFHVPQTVHG-SVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+|.+-.|.+...+...-++.- . .++. .+.+.+......| ..| ..+.++.|||++.+||+-+..
T Consensus 80 vp~~~~~~~Yy~r~~~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~---~Lg~~~~s~D~~~la~s~D~~------ 150 (682)
T COG1770 80 VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFF---SLGAASISPDHNLLAYSVDVL------ 150 (682)
T ss_pred CccccCCeeEEEEecCCCcceeEEeccCCCCCceeEeecchhccCcccce---eeeeeeeCCCCceEEEEEecc------
Confidence 3456777777777665443334433 2 3333 3444454322221 111 235889999999999975543
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
+..+-.|.+.|+.+|+..... -.....+++|.+|++. +.|
T Consensus 151 ---------------------------------G~e~y~lr~kdL~tg~~~~d~---i~~~~~~~~Wa~d~~~----lfY 190 (682)
T COG1770 151 ---------------------------------GDEQYTLRFKDLATGEELPDE---ITNTSGSFAWAADGKT----LFY 190 (682)
T ss_pred ---------------------------------cccEEEEEEEecccccccchh---hcccccceEEecCCCe----EEE
Confidence 224568899999999764431 1123668899999999 999
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEEecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..... .++..||...+... ...-+.+.+... ...++.=|-..++|+...++.
T Consensus 191 t~~d~~----------~rp~kv~~h~~gt~---------------~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~ 245 (682)
T COG1770 191 TRLDEN----------HRPDKVWRHRLGTP---------------GSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSH 245 (682)
T ss_pred EEEcCC----------CCcceEEEEecCCC---------------CCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCC
Confidence 874322 25668888887210 122222222211 122333344455554443221
Q ss_pred CCCCCCccccccceeeecCCCCC--CCCccceeeE-------Ee--cccccCCC-CCcccccCCC---------------
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGN--FSSLEKIVDV-------IP--VVQCAEGD-CFPGLYSSSI--------------- 391 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~-------~~--~~~~~~~~-~f~g~~~~~~--------------- 391 (771)
..+++++++.+..+. +.+......+ -+ .+..+.++ .|. +++.-+
T Consensus 246 --------~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~gknf~-l~~ap~~~~~~~w~~~I~h~~ 316 (682)
T COG1770 246 --------ITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADGKNFK-LVRAPVSADKSNWRELIPHRE 316 (682)
T ss_pred --------cceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCCcceE-EEEccCCCChhcCeeeeccCC
Confidence 234455555433322 1111110000 00 00000000 110 111000
Q ss_pred --CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCce-eeEEe--ecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 392 --LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFS-WSLLT--LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 392 --~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~-~~~~s--~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.--.++--.+.|++.-..++...++..+.++++...|..+...+. +...+ .+.+.|.+..+++++|.+++=+++.
T Consensus 317 ~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~ 396 (682)
T COG1770 317 DVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396 (682)
T ss_pred CceeeeeeeeccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeecc
Confidence 001122223456666667778889999998898888876654221 11222 3678899999999999999999987
Q ss_pred ccCCCceeeeeccCCCCCC-CchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC
Q 004141 467 DKANKGTWSWLNVSSPISR-CPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG 545 (771)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG 545 (771)
+++ ...+ . ..+++. ++ +..+..+.|. ....||..|...++.-++.+-.++.|++++.+|
T Consensus 397 t~e-r~~L-k---qqeV~~g~d--------p~~Y~s~riw-------a~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYG 456 (682)
T COG1770 397 TGE-RTLL-K---QQEVPGGFD--------PEDYVSRRIW-------ATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYG 456 (682)
T ss_pred CCc-EEEE-E---eccCCCCCC--------hhHeEEEEEE-------EEcCCCcEeeEEEEEecccCCCCCCcEEEEEec
Confidence 764 1111 0 111222 32 2233333332 123678888888888777667788999999999
Q ss_pred CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcCh
Q 004141 546 GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH 625 (771)
Q Consensus 546 g~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~ 625 (771)
..+......|+...--|..+||+......||.++.|..|.+......-.+.+.|++++.++|++++..++++|+++|.|+
T Consensus 457 aYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSA 536 (682)
T COG1770 457 AYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSA 536 (682)
T ss_pred cccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCc
Confidence 88777777888666678899999999999999999999987766555567799999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCc-chhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC
Q 004141 626 GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 704 (771)
Q Consensus 626 GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 704 (771)
||+++..++.+.|++|+++|+..|++|....+.-..+|- -.....+|. ....+..+.+...||..++..-.
T Consensus 537 GGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGN--------P~d~e~y~yikSYSPYdNV~a~~ 608 (682)
T COG1770 537 GGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGN--------PLDPEYYDYIKSYSPYDNVEAQP 608 (682)
T ss_pred hhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCC--------cCCHHHHHHHhhcCchhccccCC
Confidence 999999999999999999999999999754333222221 011122333 12356677788999999887754
Q ss_pred -CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCC
Q 004141 705 -TPTIFLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIE 750 (771)
Q Consensus 705 -~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~ 750 (771)
+|+|++.|..|++|...+..++..+|+..+. ++-+..--++||+-.
T Consensus 609 YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~ 658 (682)
T COG1770 609 YPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGA 658 (682)
T ss_pred CCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCC
Confidence 6799999999999999999999999998754 344445467999754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=244.74 Aligned_cols=281 Identities=12% Similarity=0.116 Sum_probs=207.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+. .++|+|+..... .+...+.||+++. ++.+.+++|... ..+..|
T Consensus 148 ~~~d~i~~~ltg~~g~f-----------~~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p 207 (435)
T PRK05137 148 KIADAIYERLTGEKGYF-----------DTRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTP 207 (435)
T ss_pred HHHHHHHHHHhCCCCcC-----------CCeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEee
Confidence 34466888888776543 247788765421 1233678999775 455677787664 458899
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 208 ~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 267 (435)
T PRK05137 208 RFSPNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG--------- 267 (435)
T ss_pred EECCCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC---------
Confidence 9999999999998765 557888888 566666666544332 4889999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.
T Consensus 268 --------------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~ 309 (435)
T PRK05137 268 --------------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESD 309 (435)
T ss_pred --------------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEEC
Confidence 347899999999999999 555555667999999999 999884
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||++|+ ++++.++|+...+....|.|||||++|+|.+...
T Consensus 310 ~~g------------~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~----- 355 (435)
T PRK05137 310 RSG------------SPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG----- 355 (435)
T ss_pred CCC------------CCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC-----
Confidence 322 238999998 7888889987766677899999999999998653
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe---eEEEEEEC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNV 420 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~---~~l~~~d~ 420 (771)
+..+|+++|+.++..+.++.+. ....+.|||||+.|+|.+...+. ..||.+++
T Consensus 356 ---~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 356 ---GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred ---CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 2467999998776554443221 13567899999999998875544 58999999
Q ss_pred CCCcEEEecCCCCCceeeEEee
Q 004141 421 SSGELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 421 ~tg~~~~l~~~~~~~~~~~~s~ 442 (771)
++++.++++. .+....+.|+|
T Consensus 412 ~g~~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 412 TGRNEREVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCceEEccC-CCCccCcccCC
Confidence 9888888774 33345566664
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=241.36 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=207.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+..+ +|+|...... +...+.||+++. ++.+.++++... ..+..|
T Consensus 165 ~~~d~i~~~ltG~~g~f~~-----------riayv~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p 223 (448)
T PRK04792 165 RISDIVYEKLTGERGAFLT-----------RIAYVVVNDK---DKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSP 223 (448)
T ss_pred HHHHHHHHHhcCCCccccC-----------EEEEEEeeCC---CCCceEEEEEeC--CCCCceEeecCC-----CcccCc
Confidence 3456678888877776643 4577665432 234568888765 444667777665 457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|+|++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 224 ~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~--------- 283 (448)
T PRK04792 224 AWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD--------- 283 (448)
T ss_pred eECCCCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC---------
Confidence 9999999999998764 667899888 666666666543322 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 284 --------------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~ 325 (448)
T PRK04792 284 --------------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSE 325 (448)
T ss_pred --------------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEEC
Confidence 346899999999999998 555445678999999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
..+ ..+||.+|+ ++++.++|+.......+|.|||||++|+|.+...
T Consensus 326 ~~g------------~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~----- 371 (448)
T PRK04792 326 RGG------------KPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN----- 371 (448)
T ss_pred CCC------------CceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC-----
Confidence 322 238999998 7788888875544556799999999999987653
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+..+|+++|+.+++.+.++... ....+.|+|||+.|+|++..++...||.++.+++
T Consensus 372 ---g~~~I~~~dl~~g~~~~lt~~~---------------------~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 372 ---GKFNIARQDLETGAMQVLTSTR---------------------LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ---CceEEEEEECCCCCeEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2467999999887765554321 1125689999999999998888888999999777
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++++...+....+.|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 7777766555455566665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=238.88 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=206.4
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+.+- +.+|+|+.... ..+...+.||+++. ++.+.++++... ..+..|
T Consensus 150 ~~~d~i~~~~tg~~g~f-----------~~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p 209 (433)
T PRK04922 150 QIADAIYEKITGVPGAF-----------WTRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSP 209 (433)
T ss_pred HHHHHHHHHHcCCCCcc-----------cceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----Cccccc
Confidence 34566778887665443 24578876543 22345678898775 455677787654 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..+++.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 210 ~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~--------- 269 (433)
T PRK04922 210 AWSPDGKKLAYVSFER-GRSAIYVQDLATGQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD--------- 269 (433)
T ss_pred cCCCCCCEEEEEecCC-CCcEEEEEECCCCCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC---------
Confidence 9999999999998754 567888888 566666665543222 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|++.
T Consensus 270 --------------------------------g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd 311 (433)
T PRK04922 270 --------------------------------GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSD 311 (433)
T ss_pred --------------------------------CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEEC
Confidence 336899999999999988 454444567899999999 999984
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ ++++.++++........|+|||||++|+|.+...
T Consensus 312 ~~g------------~~~iy~~dl-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~----- 357 (433)
T PRK04922 312 RGG------------RPQIYRVAA-----------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG----- 357 (433)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC-----
Confidence 322 237999998 7788888886555566899999999999987643
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+..+|+++|+.+++.+.++.+. ....+.|+|||+.|+|.+...+...||.++++++
T Consensus 358 ---~~~~I~v~d~~~g~~~~Lt~~~---------------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 358 ---GQYRIAVMDLSTGSVRTLTPGS---------------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred ---CceeEEEEECCCCCeEECCCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 2358999999887766554332 1235689999999999998878889999999887
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++++...+....+.|+|
T Consensus 414 ~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEcccCCCCCCCCccCC
Confidence 7888876544444555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=237.28 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=202.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.++..+..-+ .+|+|.... ...++||.++. ++...++++... ..+..|
T Consensus 146 ~~~d~i~~~~tg~~g~f~-----------~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p 201 (427)
T PRK02889 146 RIADYIYEKLTGERGVFS-----------TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISP 201 (427)
T ss_pred HHHHHHHHHhcCCCcccc-----------cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccc
Confidence 445566777666554332 468887632 23568998765 444666676554 457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|..+ .+++..+++...... ..+.|||||++|+|.....
T Consensus 202 ~wSPDG~~la~~s~~~-~~~~I~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~--------- 261 (427)
T PRK02889 202 AWSPDGTKLAYVSFES-KKPVVYVHDLATGRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD--------- 261 (427)
T ss_pred eEcCCCCEEEEEEccC-CCcEEEEEECCCCCEEEeecCCCCc----------cceEECCCCCEEEEEEccC---------
Confidence 9999999999998754 567788888 566666665543322 4899999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||++ |+|+++
T Consensus 262 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~ 303 (427)
T PRK02889 262 --------------------------------GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSD 303 (427)
T ss_pred --------------------------------CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEec
Confidence 347899999999998888 554445667899999999 999874
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .++..++++........|.|||||++|+|.+... |
T Consensus 304 ~~g------------~~~Iy~~~~-----------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~----g 350 (427)
T PRK02889 304 RGG------------APQIYRMPA-----------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG----G 350 (427)
T ss_pred CCC------------CcEEEEEEC-----------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC----C
Confidence 322 237999998 6777777775555566899999999999998764 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.++++... ....+.|+|||+.|+|.+..++...|+.+++++.
T Consensus 351 ----~~~I~v~d~~~g~~~~lt~~~---------------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 351 ----AFKLYVQDLATGQVTALTDTT---------------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred ----cEEEEEEECCCCCeEEccCCC---------------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 357999999888765554321 1246789999999999998888888999999766
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|+|
T Consensus 406 ~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred ceEEeecCCCCCCCCccCC
Confidence 6666765445455566665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-25 Score=233.94 Aligned_cols=255 Identities=9% Similarity=0.008 Sum_probs=187.4
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 004141 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~ 132 (771)
+++|...... .+.+.||+.|. ++.+.++++.+. ....|.|||||++ ++|++... +..++|.++ .+
T Consensus 156 r~~~v~~~~~----~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYTG----PKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEccC----CCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 5566554211 23679999775 444666676552 3668999999997 66666643 567999999 67
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004141 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
++.++++...... ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 7777777643322 4688999999999986432
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.+||++|+++++.++| +........+.|||||++ |+|++++. ...+||.+|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~------------g~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRL------------GYPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCC------------CCceEEEEEC-----
Confidence 347999999999999999 554444557899999999 99998542 2248999999
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++++.++++.... ..+.|||||++|+|.+.......+ ....+|+++|+++++.++++...
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~---- 368 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANG---- 368 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCC----
Confidence 8888888886533 246999999999999976421100 12368999999998877776532
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|||||+.|+|.+..++...|+.+++++....++....+
T Consensus 369 -----------------~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 369 -----------------VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred -----------------CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 12357899999999999888788889999998777777765444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=234.15 Aligned_cols=282 Identities=15% Similarity=0.166 Sum_probs=205.1
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+..+|+.|+..+... .++|+|.....+. +...+.||+++. ++.+.++++... .....|
T Consensus 145 ~i~d~i~~~ltg~~g~f-----------~~~ia~v~~~~~~--~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p 204 (430)
T PRK00178 145 YISDQSFEKLTGIKGAF-----------STRILYVTAERFS--VNTRYTLQRSDY--DGARAVTLLQSR-----EPILSP 204 (430)
T ss_pred HHHHHHHHHHhCCCccc-----------eeeEEEEEeeCCC--CCcceEEEEECC--CCCCceEEecCC-----Cceeee
Confidence 44566788887666432 2468887654431 224557888665 444666776554 456889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++... +..++|.++ .+++.++++...... ..+.|||||++|+|.....
T Consensus 205 ~wSpDG~~la~~s~~~-~~~~l~~~~l~~g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~--------- 264 (430)
T PRK00178 205 RWSPDGKRIAYVSFEQ-KRPRIFVQNLDTGRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD--------- 264 (430)
T ss_pred eECCCCCEEEEEEcCC-CCCEEEEEECCCCCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC---------
Confidence 9999999999998765 567899888 666666665443222 4789999999999975432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 265 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~ 306 (430)
T PRK00178 265 --------------------------------GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSD 306 (430)
T ss_pred --------------------------------CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEEC
Confidence 236899999999999988 555545678899999999 999974
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.+++ .+++.++++........|.|||||++|+|..... |
T Consensus 307 ~~g------------~~~iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~----~ 353 (430)
T PRK00178 307 RGG------------KPQIYKVNV-----------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD----G 353 (430)
T ss_pred CCC------------CceEEEEEC-----------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC----C
Confidence 322 238999998 7788888876555566799999999999998654 2
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
..+|+++|+.+++.+.++... ....+.|||||+.|+|++...+...||.++++++
T Consensus 354 ----~~~l~~~dl~tg~~~~lt~~~---------------------~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 354 ----NFHVAAQDLQRGSVRILTDTS---------------------LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ----ceEEEEEECCCCCEEEccCCC---------------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 457999999988766554321 1135689999999999998888888999999776
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..+++....+....+.|++
T Consensus 409 ~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 409 VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6667765444444555654
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=209.86 Aligned_cols=302 Identities=20% Similarity=0.244 Sum_probs=226.0
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCCceE
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPF 521 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l 521 (771)
.+...+.|..+++-+|+.+|.+|+..+.-... ...+++..++.+ ....+.+..+ .+.+.||..+
T Consensus 391 ~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~-vf~e~~~~lpg~--------~~s~y~~~r~-------~~~SkDGt~V 454 (712)
T KOG2237|consen 391 FKSSTIRFQFSSFLTPGSIYDYDLANGKPEPS-VFREITVVLPGF--------DASDYVVERI-------EVSSKDGTKV 454 (712)
T ss_pred CCCceEEEEEeccCCCCeEEEeeccCCCCCCc-ceeeeccccCcc--------cccceEEEEE-------EEecCCCCcc
Confidence 36678999999999999999999987641111 112333222211 1222333333 3456678888
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
...++..+..+-.+++|++++.||+.+......|...-..|..+|++....|.||.|++|..|++......-.+.++|++
T Consensus 455 PM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfi 534 (712)
T KOG2237|consen 455 PMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFI 534 (712)
T ss_pred ceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHH
Confidence 88888877666677899999999998877667777655566779999999999999999999998877666677899999
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchh-hhhccCCCCccCC
Q 004141 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY-VESYGSKGKDSFT 680 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 680 (771)
+++++|+++++..+++.++.|.|.||.++..++.++|++|+|+|+..|+.|+......+..+-|.. .+.++
T Consensus 535 a~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~sd~ee~g-------- 606 (712)
T KOG2237|consen 535 ACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTSDYEEWG-------- 606 (712)
T ss_pred HHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchhhhcccC--------
Confidence 999999999999999999999999999999999999999999999999999987776666665532 12222
Q ss_pred CCCChhhHHHHhhcCcccccCCCC-----CcEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCCEEEEEeCCCCcc
Q 004141 681 ESPSVEDLTRFHSKSPISHISKVK-----TPTIFLLGAQDLRVPVSNGLQYARALREK-------GVETKVIVFPNDVHG 748 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i~-----~P~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~~~~~~H~ 748 (771)
.+++...+...+|...+++++ +-+|+..+.+|.+|++.++..+.++|+.. ..++-+.+..++||+
T Consensus 607 ---~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i~~~agH~ 683 (712)
T KOG2237|consen 607 ---NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRIETKAGHG 683 (712)
T ss_pred ---ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEEecCCccc
Confidence 234555666666666555553 45899999999999999999999999864 135778889999997
Q ss_pred CCCCCC-hHHHHHHHHHHHHHhh
Q 004141 749 IERPQS-DFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~-~~~~~~~i~~fl~~~L 770 (771)
.-.+.. ..+-.....+||.+.+
T Consensus 684 ~~~~~~k~~~E~a~~yaFl~K~~ 706 (712)
T KOG2237|consen 684 AEKPRFKQIEEAAFRYAFLAKML 706 (712)
T ss_pred cCCchHHHHHHHHHHHHHHHHHh
Confidence 654322 1222334566776654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=223.94 Aligned_cols=274 Identities=13% Similarity=0.141 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
.-+.++|+.|+..+.+- +++|+|+....+ +.+.+.||+++.+ +.+.++++... ..+..|
T Consensus 151 ~~~d~i~~~ltg~~g~f-----------~~ria~v~~~~~---~~~~~~i~i~d~d--g~~~~~lt~~~-----~~v~~p 209 (429)
T PRK01742 151 TVSDEVFEKLTAIRGAF-----------RTRIAYVVQKNG---GSQPYEVRVADYD--GFNQFIVNRSS-----QPLMSP 209 (429)
T ss_pred HHHHHHHHHHcCCCCcc-----------CCEEEEEEEEcC---CCceEEEEEECCC--CCCceEeccCC-----Cccccc
Confidence 34566788887777665 357788876543 2345789998763 43555666544 457889
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
+|||||++|||++..+ +..+++..+ .+++.+.+....... ..++|||||++|+|.....
T Consensus 210 ~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~--------- 269 (429)
T PRK01742 210 AWSPDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD--------- 269 (429)
T ss_pred eEcCCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC---------
Confidence 9999999999998754 556788777 555555555443222 4789999999999975422
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
+..+||++|+++++.+++ +........+.|||||+. |+|++.
T Consensus 270 --------------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~ 311 (429)
T PRK01742 270 --------------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSD 311 (429)
T ss_pred --------------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEEC
Confidence 235799999999999998 555556778999999999 999974
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSG 343 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g 343 (771)
+.+ ..+||.++. .++..+.++. .. ..+.|||||++|+|.+..
T Consensus 312 ~~g------------~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~------ 353 (429)
T PRK01742 312 RSG------------SPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD------ 353 (429)
T ss_pred CCC------------CceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC------
Confidence 322 238999997 5666666643 22 468999999999998642
Q ss_pred CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 344 AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 344 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
+|+++|+.++....++... ....+.|+|||+.|++.+..++...++.++.+++
T Consensus 354 ------~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 354 ------NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred ------CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 3888998887654332211 1235789999999999887655556777788777
Q ss_pred cEEEecCCCCCceeeEEee
Q 004141 424 ELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~ 442 (771)
..++|....+....+.|+|
T Consensus 407 ~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred ceEEccCCCCCCCCcccCC
Confidence 7778865555455566765
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=225.09 Aligned_cols=245 Identities=13% Similarity=0.121 Sum_probs=187.5
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
-..+|||+++..++ ..++|+++ ++...++++...... ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 45689999876532 45788777 566667777543333 5899999999999986542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+++ +........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELV--GNFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEe--ecCCCcccCcEECCCCCE----EEEEEec
Confidence 347999999999998888 444445668899999999 9998632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||.+|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~----g- 312 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS----G- 312 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC----C-
Confidence 2 3358999998 8888999998877788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...|+.++++++.
T Consensus 313 ---~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 313 ---SPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred ---CCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 468999999887665554321 023457899999999998866666789999998888
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCC--CeEEEEEeccc
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p--~~l~~~~~~~~ 468 (771)
.+.++... ....+.|+|||+.|+++....... ..||+.++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 87776543 345688999999999988766553 57999887544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=218.64 Aligned_cols=239 Identities=11% Similarity=0.057 Sum_probs=181.1
Q ss_pred CeEEEEecC-CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNP-ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 187 (771)
.++||+... .....+++.++ ++.+.+.++... .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 467777653 32367899888 555555565532 22 48999999997 66665432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 247999999999999999 444444567899999999 99987432
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
.+.+||++++ ++++.++||........|.|||||++|+|.+++. |
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~----g---- 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL----G---- 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC----C----
Confidence 3458999998 8888999998777677899999999999999874 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECC
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 421 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~------~~~~l~~~d~~ 421 (771)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999988876654321 11247999999999988644 33689999999
Q ss_pred CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 422 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+|+.++|+.... ...+.|+|||+.|+|+... ..-..|++.++...
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3458999999999998765 44456888887543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=220.29 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=182.2
Q ss_pred EEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe--EEEEecCCC
Q 004141 104 VVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEPS 175 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~--la~~~~~~~ 175 (771)
+.++ +++|||+....+ ....+|+++ ++++.+++|...... ..|.|||||++ ++|++...
T Consensus 142 ~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~- 208 (428)
T PRK01029 142 PGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL- 208 (428)
T ss_pred Cccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC-
Confidence 4555 999999987542 245799998 777788887743333 48999999998 55576543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+.++||++++++|+.+++ +........+.|||||++
T Consensus 209 ----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~-- 244 (428)
T PRK01029 209 ----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL-- 244 (428)
T ss_pred ----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE--
Confidence 347999999999999998 444445667999999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEE--ecccccchhhhhhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~ 332 (771)
|+|++...+ ..+||.. +++. ..++..++++... .....|+|||||++|+
T Consensus 245 --Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~La 296 (428)
T PRK01029 245 --LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRLV 296 (428)
T ss_pred --EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEEE
Confidence 999984322 2256664 4410 0135677888654 3467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|.+.+. | ..+||++++.+.+ .++++... .....+.|||||+.|+|.....
T Consensus 297 f~s~~~----g----~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 297 FVSNKD----G----RPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred EEECCC----C----CceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcCC
Confidence 998764 2 4579999885422 22332211 0234678999999999988777
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+..+|+.+|+++|+.++++........+.|++||+.|++..... ....||+.++.++
T Consensus 349 g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 349 GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 77789999999999999987654456689999999999887654 3467998887654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-22 Score=216.19 Aligned_cols=241 Identities=17% Similarity=0.164 Sum_probs=181.9
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+....++ ..++++++ ++.+.++++...... ..++|||||++|+|++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999875322 45678777 566667776643333 5899999999999986432
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
+..+||++|+.+|+.+.+ +........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l--~~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEc--cCCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 347899999999998888 443334567999999999 99986422
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...+||++|+ ++++.++++.....+..|.|||||++|+|.+.+. |
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~----g---- 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA----G---- 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC----C----
Confidence 2237999998 8888999998777788999999999999999764 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+||++|+.+++.++++... .....+.|||||+.|++.....+...||.+|+++++.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 468999999887654443211 012457899999999998877777789999999999999
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
|+.... ...+.|+|||+.|++...... ...+++.++..
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986432 345789999999999886543 35577777643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-22 Score=214.85 Aligned_cols=239 Identities=17% Similarity=0.186 Sum_probs=180.1
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004141 111 SKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+|||+.... +..+++.++ ++...++++...... ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 5799998543 556788777 454556665543333 5899999999999986532
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004141 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
..++||++|+.+++.+++ +........++|||||+. |+|+....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l--~~~~g~~~~~~~SPDG~~----la~~~~~~---- 261 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVV--ANFKGSNSAPAWSPDGRT----LAVALSRD---- 261 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEEccC----
Confidence 347899999999998888 433345568999999999 99976322
Q ss_pred eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 270 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
...+||.+|+ .++..++|+.......+|.|||||++|+|.+++. | ..
T Consensus 262 --------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~----g----~~ 308 (427)
T PRK02889 262 --------GNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG----G----AP 308 (427)
T ss_pred --------CCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC----C----Cc
Confidence 3358999998 7788889988776778899999999999998764 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||.+++.++..++++... . ....+.|||||+.|++.+...+..+|+.+|+.+++.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-----------------S---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-----------------C---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998776554432111 0 1235789999999999887666778999999999999888
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 430 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.... ...+.|+|||+.|++....... ..+++.++.
T Consensus 369 ~~~~-~~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTR-DESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCC-ccCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 6533 3567999999999999876654 568887764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=211.81 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=179.6
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004141 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3578888765422 34666666 555566666654333 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004141 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~l--t~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKV--TSFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEe--cCCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 347899999999998888 333334557899999999 99986432
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||++|+ ++++.++|+........|.|||||++|+|.+.+. |
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~----g--- 328 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG----G--- 328 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C---
Confidence 2348999998 8888899998766778899999999999998664 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||++|+.+++.++++... . ....++|||||+.|+|.....+..+||.+|+++++.+
T Consensus 329 -~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 329 -KPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred -CceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 468999999887765443111 0 1235689999999999887677778999999999998
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.++....+ ..+.|+|||+.|++...... ...||+.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 88865332 34689999999998886543 4568887764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=208.87 Aligned_cols=243 Identities=14% Similarity=0.133 Sum_probs=180.3
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
=+++|||++...++ ..++++++ ++.+.++++...... ..+.|||||++|+|++...
T Consensus 166 f~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~---------- 225 (433)
T PRK04922 166 FWTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER---------- 225 (433)
T ss_pred ccceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC----------
Confidence 35679998765322 23466555 455566676543333 5899999999999986432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+.+++.+.+ +........+.|||||+. |+|+...
T Consensus 226 -------------------------------~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~----l~~~~s~ 268 (433)
T PRK04922 226 -------------------------------GRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRR----LALTLSR 268 (433)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCE----EEEEEeC
Confidence 347899999999998888 333334557899999999 9998643
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ .+++.++++.......+|.|||||++|+|.+.+. |
T Consensus 269 ~------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~----g- 314 (433)
T PRK04922 269 D------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG----G- 314 (433)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888899988766677899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... . ....++|||||+.|++....++..+|+.+|+.+++
T Consensus 315 ---~~~iy~~dl~~g~~~~lt~~g-----------------~---~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 315 ---RPQIYRVAASGGSAERLTFQG-----------------N---YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ---CceEEEEECCCCCeEEeecCC-----------------C---CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC
Confidence 358999999887665543211 0 12357899999999998766666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.+.|+.... ...+.|++||+.|++..... .-..||+.++..
T Consensus 372 ~~~Lt~~~~-~~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 372 VRTLTPGSL-DESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred eEECCCCCC-CCCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 998886543 34578999999999988764 346788887643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.2e-21 Score=209.36 Aligned_cols=242 Identities=15% Similarity=0.174 Sum_probs=179.8
Q ss_pred CCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 109 SGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 109 dG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
..++|||++.... +..+++.++ ++++.+.++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 4567999876432 233566666 555555665543332 5899999999999986532
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+..+||++|+++++.+.+ +........+.|||||++ |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l--~~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQI--TNFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEc--cCCCCCcCCeEECCCCCE----EEEEEcc
Confidence 347899999999999888 443334557999999999 9998743
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. ...+||++|+ ++++.++|+.......+|.|||||++|+|.+.+. |
T Consensus 264 ~------------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~----g- 309 (430)
T PRK00178 264 D------------GNPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG----G- 309 (430)
T ss_pred C------------CCceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC----C-
Confidence 2 2348999998 7888889998777788899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|||||+.|+|.....+...|+.+|+++++
T Consensus 310 ---~~~iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 310 ---KPQIYKVNVNGGRAERVTFVG--------------------NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 468999999887754443111 012356899999999998876666789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+.|+..... ..+.|+|||+.++++...... ..|++.++.
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~ 406 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSIN 406 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECC
Confidence 9999875433 357899999999998865443 468887764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=204.10 Aligned_cols=254 Identities=16% Similarity=0.195 Sum_probs=183.7
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 004141 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 131 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~ 131 (771)
+.+++|..... +...+.||+++. .+.+.++++... .....|+|||||++|||+.... +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677775432 245678888775 344567776543 3477899999999999987654 556788777 5
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
++...++....... ..++|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 4789999999999975432
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+..+||++|+.+++.+.+ +........+.|+|||++ |+|++...+ ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRL--TNGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEEC--CCCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 346899999999998888 444444567899999999 999874322 237999998
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.++++........|.|||||++|+|..... ...+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 7777888887766778899999999999998763 2467999999876544333211
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
....+.|+|||+.|++.+..++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356899999999999988777788888887666766765433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=190.48 Aligned_cols=223 Identities=13% Similarity=0.073 Sum_probs=151.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKV 592 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~~ 592 (771)
...+|..|.||+..|++. ..++.++||++||..... ..+...+++|+++||.|+.+|+||. ++++.++....
T Consensus 15 ~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t---- 87 (307)
T PRK13604 15 CLENGQSIRVWETLPKEN-SPKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT---- 87 (307)
T ss_pred EcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc----
Confidence 455799999999999742 346778999999966542 3477889999999999999999875 55544432111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
......|+.++++|+.++. .++|+|+||||||.+++.+|.. + .++++|+.+|+.++.......-..++.......
T Consensus 88 ~s~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~~ 162 (307)
T PRK13604 88 MSIGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPIDE 162 (307)
T ss_pred ccccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCcccc
Confidence 1123789999999998763 4689999999999998766664 2 489999999999865332210000000000000
Q ss_pred CCCCccCCCCCCh--hhHHH------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 673 SKGKDSFTESPSV--EDLTR------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 673 ~~~~~~~~~~~~~--~~~~~------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
....-.+.+.... ..... ....+|+..+.+++.|+|+|||+.|..||++.+++++++++. .+.+++.+||
T Consensus 163 lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~G 240 (307)
T PRK13604 163 LPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIG 240 (307)
T ss_pred cccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCC
Confidence 0000001111110 00011 113456677888899999999999999999999999998764 3589999999
Q ss_pred CCccCC
Q 004141 745 DVHGIE 750 (771)
Q Consensus 745 ~~H~~~ 750 (771)
+.|.+.
T Consensus 241 a~H~l~ 246 (307)
T PRK13604 241 SSHDLG 246 (307)
T ss_pred CccccC
Confidence 999886
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=205.06 Aligned_cols=330 Identities=16% Similarity=0.152 Sum_probs=214.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.+.+..+....-+......++++++... +.++++.. ......+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-----PPKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-----ETTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-----ccccccceeecCCCeeEEEecCc-----eEEE
Confidence 689999999888776666667788899887443 44555433 24578999999999999998765 8888
Q ss_pred e-cCCcceEEEecC-----CcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCC
Q 004141 130 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 200 (771)
Q Consensus 130 ~-~~~~~~~~~~~~-----~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (771)
. .++..+++|.-. .+..+.+|.++ ....+.|||||++|||...+......+.............. ..
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~----~~ 144 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPE----VE 144 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-E----EE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCc----cc
Confidence 7 566667777643 12233444443 33588999999999999866543321111100000000000 00
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCC----CCCCccceEEEecCCCCCccEEEEEe-ecCcceeeeeeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYC 275 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----~~~~~~~~~~wspDg~~~~~~l~~~~-~~~~~~~~g~~~~ 275 (771)
.+.| |.-|.. .....|+++|+++++...+... +.+..+..+.|++|++. |++.. ++.
T Consensus 145 ~~~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~---------- 206 (353)
T PF00930_consen 145 SIRY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRD---------- 206 (353)
T ss_dssp EEE---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETT----------
T ss_pred cccc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccC----------
Confidence 1111 111211 1345899999999987665311 23456788999999996 66653 222
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---CCc--cccceeec-CCCCEEEEEecCCCCCCCCccccc
Q 004141 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---~~~--~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
+....|+.+|+ .++..+.+.. ... ....+.|. ++|..++|++.++ | ..
T Consensus 207 -q~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~----G----~~ 260 (353)
T PF00930_consen 207 -QNRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD----G----YR 260 (353)
T ss_dssp -STEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT----S----SE
T ss_pred -CCEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC----C----Cc
Confidence 22336778887 5555443321 111 13345655 9999999999864 3 67
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEEEEEECC-CCcEE
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVIISVNVS-SGELL 426 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~~~d~~-tg~~~ 426 (771)
+|++++..++..+++|.+..++.. ...|.++++.|+|.+..+ ...+||+++++ +++++
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~-------------------i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTS-------------------ILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEE-------------------EEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EEEEEcccccceeccccCceeecc-------------------cceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 899999999888888887766533 236888999999999853 57799999999 99999
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCC
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~ 458 (771)
+||..........||+++++++..+++++.|+
T Consensus 322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 322 CLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred eccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 99988775556899999999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=199.54 Aligned_cols=270 Identities=16% Similarity=0.168 Sum_probs=197.9
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004141 24 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
...+..+|+.++.++......+ +|.... ..+...++++..|.+ +.....++... .....
T Consensus 139 h~~ad~~~e~lt~~~g~~~~~i-----------~~v~~~---~~~~~~~~l~~~D~d--g~~~~~l~~~~-----~~~~~ 197 (425)
T COG0823 139 HTIADAIYEKLTGIKGAFDTRI-----------AYVAES---DGGPLPYELALGDYD--GYNQQKLTDSG-----SLILT 197 (425)
T ss_pred chhhhhhhhhhcCCcceecceE-----------EEEeec---ccCCCCceEEEEccC--CcceeEecccC-----cceec
Confidence 3456667788887777765444 332211 334466788886643 44455555554 34678
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|.|||||++++|+.-..++..++|.+. ..+...+++...... ..++|||||++|+|...+.
T Consensus 198 p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~----------~~P~fspDG~~l~f~~~rd-------- 259 (425)
T COG0823 198 PAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN----------GAPAFSPDGSKLAFSSSRD-------- 259 (425)
T ss_pred cccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc----------CCccCCCCCCEEEEEECCC--------
Confidence 999999999999987664447888888 666666776654333 5899999999999987654
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+..+||++|+.+++..+| +........+.|||||++ |||++
T Consensus 260 ---------------------------------g~~~iy~~dl~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~S 300 (425)
T COG0823 260 ---------------------------------GSPDIYLMDLDGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTS 300 (425)
T ss_pred ---------------------------------CCccEEEEcCCCCcceec--ccCCccccCccCCCCCCE----EEEEe
Confidence 458999999999998888 565555669999999999 99998
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCC
Q 004141 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS 342 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~ 342 (771)
.+.+ ..+||++++ +++..+++|...+....|.|||||++|+|.+...
T Consensus 301 dr~G------------~p~I~~~~~-----------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~---- 347 (425)
T COG0823 301 DRGG------------RPQIYLYDL-----------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG---- 347 (425)
T ss_pred CCCC------------CcceEEECC-----------------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccC----
Confidence 5433 238999998 8888899998888877999999999999999542
Q ss_pred CCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 343 GAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 343 g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
| ...+...|+.++.. +.++... ....++|++||+.|+|.+...+...|+.+...
T Consensus 348 g----~~~i~~~~~~~~~~~~~lt~~~---------------------~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 348 G----QWDIDKNDLASGGKIRILTSTY---------------------LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred C----ceeeEEeccCCCCcEEEccccc---------------------cCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 2 26788888877663 2222221 23578899999999999887777888888874
Q ss_pred CCcEEEec
Q 004141 422 SGELLRIT 429 (771)
Q Consensus 422 tg~~~~l~ 429 (771)
+.....+.
T Consensus 403 g~~~~~~~ 410 (425)
T COG0823 403 GRVSRPLP 410 (425)
T ss_pred ceeEEEEe
Confidence 43333443
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=192.09 Aligned_cols=230 Identities=17% Similarity=0.171 Sum_probs=150.2
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCC-ChhhhhcCCCCc--cccchh
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKV--GSQDVN 598 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~-g~~~~~~~~~~~--~~~~~~ 598 (771)
..+.+.|.+ ...++.|+||++||.+.. ...+...++.|+++||.|+++|+||.+.. +..........+ .....+
T Consensus 13 ~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~ 89 (249)
T PRK10566 13 EVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQ 89 (249)
T ss_pred ceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHHH
Confidence 345666753 124567999999997655 33577788899999999999999994321 000000000000 112357
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC-CccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
|+.++++++.+++.++.++|+++|||+||++++.++.++|+...++++.. +... ...... .+ ..... ...
T Consensus 90 ~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~-----~~~~~-~~~ 160 (249)
T PRK10566 90 EFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFT--SLARTL-FP-----PLIPE-TAA 160 (249)
T ss_pred HHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHH--HHHHHh-cc-----ccccc-ccc
Confidence 78888899888877899999999999999999999998887544433322 2111 110000 00 00000 000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~ 754 (771)
... ........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|.+ +++.++++++|.+.
T Consensus 161 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~---- 234 (249)
T PRK10566 161 QQA--EFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT---- 234 (249)
T ss_pred cHH--HHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC----
Confidence 000 000111122334454556666 699999999999999999999999999998864 78889999999874
Q ss_pred hHHHHHHHHHHHHHhh
Q 004141 755 DFESFLNIGLWFKKYC 770 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L 770 (771)
.+.+..+.+||+++|
T Consensus 235 -~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 235 -PEALDAGVAFFRQHL 249 (249)
T ss_pred -HHHHHHHHHHHHhhC
Confidence 367899999999876
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=183.60 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=172.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+..|..+....+.|.. ..+++.+|+++||.+... ...|...+..|+..||.|+++|++| +|.+..-...-.
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~~-s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdGl~~yi~ 104 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEHS-SWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDGLHAYVP 104 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCcccc-hhhHHHHHHHHHhCCCeEEEeeccC---CCcCCCCcccCC
Confidence 3456678899999999963 347788999999965432 3467778999999999999999999 554431111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh------------cC
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------GT 659 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~------------~~ 659 (771)
-...-++|+...++.+..+.....-..+++||||||.+++.++.++|..+.++|+.+|.+-...-. -.
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~ 184 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTLLS 184 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHHHH
Confidence 112337888888888777654455679999999999999999999999999999999977542111 01
Q ss_pred CCCCcchhhhhccC---------------CCCccCCCCCChhhHHHHhhc--CcccccCCCCCcEEEEeeCCCCccCcHH
Q 004141 660 TDIPDWCYVESYGS---------------KGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 660 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~lii~G~~D~~vp~~~ 722 (771)
.-+|.|.....-.. .....+.+.|.......+.+. .-..++.++..|+||+||+.|.+..+.-
T Consensus 185 ~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp~~ 264 (313)
T KOG1455|consen 185 KLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDPKV 264 (313)
T ss_pred HhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCcHH
Confidence 11233331111000 000011111211111111111 1224578899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHh
Q 004141 723 GLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 723 ~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~ 769 (771)
+++||+..... +.++.+|||+-|.+. .+++...++.+|++||+++
T Consensus 265 Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 265 SKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred HHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999988765 467889999999987 3666778899999999875
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=198.45 Aligned_cols=246 Identities=15% Similarity=0.224 Sum_probs=158.0
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.++++..+.|.+ ....+++||++||.+... ...+...+..|+++||.|+++|+|| +|.+.........
T Consensus 37 ~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~~ 110 (330)
T PLN02298 37 FTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEG---HGRSEGLRAYVPN 110 (330)
T ss_pred EEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCC---CCCCCCccccCCC
Confidence 344578999998888753 224578999999975432 2244556677889999999999999 4544211110011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcch------
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC------ 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~------ 666 (771)
.....+|+.++++++......+..+++|+||||||.+++.++.++|++++++|+.+|......... +.|.
T Consensus 111 ~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~ 186 (330)
T PLN02298 111 VDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIR----PPWPIPQILT 186 (330)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccC----CchHHHHHHH
Confidence 122367888999988765334456799999999999999999999999999999998754321100 0000
Q ss_pred hhhhccCC--------CCc-----------------cCCCCCChhhHHHHhhc--CcccccCCCCCcEEEEeeCCCCccC
Q 004141 667 YVESYGSK--------GKD-----------------SFTESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~--------~~~-----------------~~~~~~~~~~~~~~~~~--sp~~~~~~i~~P~lii~G~~D~~vp 719 (771)
....+... ... .+...+........... .....+.++++|+||+||++|.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp 266 (330)
T PLN02298 187 FVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTD 266 (330)
T ss_pred HHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCC
Confidence 00000000 000 00000000000000000 0123456789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC---hHHHHHHHHHHHHHhh
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQS---DFESFLNIGLWFKKYC 770 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~---~~~~~~~i~~fl~~~L 770 (771)
++.++.+++.+... ..+++++++++|.+...+. ...+...+.+||++++
T Consensus 267 ~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~ 318 (330)
T PLN02298 267 PDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERC 318 (330)
T ss_pred HHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999998887542 3688899999998764332 2457788999999876
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-21 Score=195.41 Aligned_cols=243 Identities=16% Similarity=0.188 Sum_probs=158.7
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|..+.+.+|.|. ..+.++|+++||.+.. ...|...+..|++.||.|+++|+|| +|.+.........
T Consensus 5 ~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~~--~~~~~~~~~~l~~~g~~via~D~~G---~G~S~~~~~~~~~ 75 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI----TYPKALVFISHGAGEH--SGRYEELAENISSLGILVFSHDHIG---HGRSNGEKMMIDD 75 (276)
T ss_pred eecCCCCEEEEEeccCC----CCCCEEEEEeCCCccc--cchHHHHHHHHHhCCCEEEEccCCC---CCCCCCccCCcCC
Confidence 34568899999999884 2456889999997654 5578888999999999999999999 5544221111011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------------hcC
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGT 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------------~~~ 659 (771)
....++|+...++++.+.. ...+++|+||||||.+++.++.++|++++++|+.+|....... ...
T Consensus 76 ~~~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 76 FGVYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1123567777777765542 3467999999999999999999999999999999997542110 000
Q ss_pred CCC-CcchhhhhccCCC--CccCCCCC-------ChhhHHHHhh--cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 660 TDI-PDWCYVESYGSKG--KDSFTESP-------SVEDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 660 ~~~-~~~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~--~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
... ..+. ........ ...+...+ .......... ......+.++++|+|+++|++|.++|++.+.+++
T Consensus 154 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~ 232 (276)
T PHA02857 154 NKIVGKLC-PESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFM 232 (276)
T ss_pred CCccCCCC-HhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHH
Confidence 000 0000 00000000 00000000 0000000000 0112346788999999999999999999999988
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHhh
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~L 770 (771)
+.+.. ++++.++++++|.+..+.. ..++++.+.+||+++.
T Consensus 233 ~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 233 QHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred HHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 87643 4789999999998876543 6789999999998764
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=198.23 Aligned_cols=249 Identities=16% Similarity=0.187 Sum_probs=156.9
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+.+|.++.+..+.|. .....|+||++||.+... ...|...+..|+++||.|+++|+|| +|.+.........
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~~ 138 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPG---FGLSEGLHGYIPS 138 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCCCCcCC
Confidence 34567899999999886 234679999999965542 1124567788888999999999999 5544211000001
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC------------C
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------------T 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~------------~ 660 (771)
....++|+.+.++.+..+...+..+++|+||||||.+++.++.++|++++++|+.+|.......... .
T Consensus 139 ~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 139 FDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHHHH
Confidence 1122566777777765543344568999999999999999999999999999999986532110000 0
Q ss_pred CCCcchhh------hh-ccCC--------CCccCCCCCChh-hHHHHhh-cCcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DIPDWCYV------ES-YGSK--------GKDSFTESPSVE-DLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~------~~-~~~~--------~~~~~~~~~~~~-~~~~~~~-~sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
..+.+... .. +... ....+...+... ....+.. ......+.++++|+|++||++|.++|++.+
T Consensus 219 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~~~ 298 (349)
T PLN02385 219 LLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPSVS 298 (349)
T ss_pred HCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChHHH
Confidence 00000000 00 0000 000000000000 0111111 111234678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHHHhh
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSD---FESFLNIGLWFKKYC 770 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~fl~~~L 770 (771)
+.+++.+... +.+++++++++|.+...+.. ..++..+++||++++
T Consensus 299 ~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~ 346 (349)
T PLN02385 299 KFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHS 346 (349)
T ss_pred HHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhc
Confidence 9998877532 36888999999998754432 347889999999875
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=195.62 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=164.9
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC
Q 004141 110 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 186 (771)
Q Consensus 110 G~~la~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 186 (771)
+++|||++...++ ...+++.+ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6889999875432 24566555 444544455433223 5899999999999986532
Q ss_pred CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCc
Q 004141 187 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
...+||++|+.+++.+.+. ........++|||||+. |+|++...
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~- 269 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKD- 269 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecC-
Confidence 3478999999999887773 33333457899999999 99986322
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
...+||.+|+ +++..++|+.+.....+|.|||||++|+|.+.+. |
T Consensus 270 -----------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~----g--- 314 (429)
T PRK01742 270 -----------GVLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS----G--- 314 (429)
T ss_pred -----------CcEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC----C---
Confidence 2237999998 7788899998777788999999999999998764 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+||.++..++....++. . . ..+.|||||+.|++... ..++.+|+.+|+.+
T Consensus 315 -~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 315 -SPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred -CceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 4689999876654322210 0 1 24579999999988754 35788999999988
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
.++... ....+.|+|||+.|++..... .-..+++.+
T Consensus 367 ~lt~~~-~~~~~~~sPdG~~i~~~s~~g-~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTF-LDESPSISPNGIMIIYSSTQG-LGKVLQLVS 402 (429)
T ss_pred EecCCC-CCCCceECCCCCEEEEEEcCC-CceEEEEEE
Confidence 887543 234578999999999887533 334445444
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=184.14 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=150.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCC--CC----------C
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSL--GF----------G 581 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d~rG~~--~~----------g 581 (771)
-|..+.+.+|.|+. ...+++|+|+++||++.... .|. .....++..||.|++||..+.+ .. +
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~--~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDE--NFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcChH--HHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 35678889999983 34568999999999765432 222 2345667889999999975422 00 1
Q ss_pred hhhh-hcCCCCcc-----ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 582 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
..+. +.....+. ....+++...++.... .++.++++|+|+||||++++.++.++|++|+++++.+|+.+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1100 00000110 0112233333332222 26889999999999999999999999999999999999876431
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCC
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKG 734 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~-~~~~~~~~l~~~g 734 (771)
. .+.. ..+ ..+.+.+ ......+...+++..+...++|+|++||++|++++.. +++.+++++++.|
T Consensus 183 ~-------~~~~-~~~-----~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g 248 (283)
T PLN02442 183 C-------PWGQ-KAF-----TNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKEAG 248 (283)
T ss_pred C-------chhh-HHH-----HHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHHcC
Confidence 1 0100 000 0111111 2334444455556666677899999999999999863 5789999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.++++.++|+++|.+. ....++.+.+.|..+++|
T Consensus 249 ~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 249 APVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred CCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 9999999999999765 223445555666666654
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-19 Score=191.94 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=179.2
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 107 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 107 SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.+.+.+++|++... ++...++.++ +++..++++...... ..+.|||||++|+|.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 44678899998764 3456677777 556667776643323 4889999999999985432
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|+++|+.+++.+.+ .........+.|||||+. |+|+...
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCE----EEEEECC
Confidence 236899999999988777 333334556899999999 9987632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+...+||.+++ .++..++++........|.|||||++|+|.+.+. |
T Consensus 255 ------------~~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~----g- 300 (417)
T TIGR02800 255 ------------DGNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG----G- 300 (417)
T ss_pred ------------CCCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC----C-
Confidence 12348999998 7778888887666667899999999999998764 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.++++... .....+.|+|||+.|++.....+..+|+.+++.++.
T Consensus 301 ---~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 301 ---SPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred ---CceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 358999998876654332211 023467899999999998876677789999999988
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
.+.++.... ...+.|++||+.|++.+..... ..+++.+.
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~ 396 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVST 396 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEEC
Confidence 888775433 3456899999999998876554 56776654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.2e-19 Score=192.36 Aligned_cols=232 Identities=15% Similarity=0.154 Sum_probs=149.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++.|+++.|+ ..++.|+||++||. .+.....|...++.|+++||+|+++|+||.+ .+... . . .
T Consensus 175 ~~~g~~l~g~l~~P~---~~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G---~s~~~--~--~-~ 242 (414)
T PRK05077 175 IPGGGPITGFLHLPK---GDGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVG---FSSKW--K--L-T 242 (414)
T ss_pred cCCCcEEEEEEEECC---CCCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCC---CCCCC--C--c-c
Confidence 345678999999997 34678887766553 3221234666778899999999999999944 33111 0 0 1
Q ss_pred cch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hh-cCCCCCcchhhhhc
Q 004141 595 QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MV-GTTDIPDWCYVESY 671 (771)
Q Consensus 595 ~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~-~~~~~~~~~~~~~~ 671 (771)
.+. ....++++++...+.+|.+||+++|+|+||++++.++..+|++++++|+.+|+++... .. .....+.. +...+
T Consensus 243 ~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~l 321 (414)
T PRK05077 243 QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDVL 321 (414)
T ss_pred ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHHH
Confidence 122 2234678888888888999999999999999999999988999999999998864210 00 00000100 00000
Q ss_pred cCCCCccCCC-CCChhh-HHHHhhcCcc--cc-cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 672 GSKGKDSFTE-SPSVED-LTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~-~~~~~~-~~~~~~~sp~--~~-~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
.. .+.. ....+. ...+...+.. .. ..++++|+|+++|++|+++|+++++.+.+... +.+++++|++
T Consensus 322 a~----~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l~~i~~~- 392 (414)
T PRK05077 322 AS----RLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKLLEIPFK- 392 (414)
T ss_pred HH----HhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeEEEccCC-
Confidence 00 0000 001111 1111111211 11 25689999999999999999999887765543 3688899986
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|.+ +...+++..+.+||+++|.
T Consensus 393 ~~~---e~~~~~~~~i~~wL~~~l~ 414 (414)
T PRK05077 393 PVY---RNFDKALQEISDWLEDRLC 414 (414)
T ss_pred Ccc---CCHHHHHHHHHHHHHHHhC
Confidence 322 3556889999999999874
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-19 Score=184.98 Aligned_cols=248 Identities=19% Similarity=0.229 Sum_probs=154.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++++..+.|. .+.++||++||.... ...|...+..|+++||.|+++|+||.|.++........+.
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~~--~~~y~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIES--YVKYAELAYDLFHLGYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccch--HHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 445667888988887653 234789999996543 3356677778889999999999999544322110000001
Q ss_pred c--cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh------------h
Q 004141 592 V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------V 657 (771)
Q Consensus 592 ~--~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~------------~ 657 (771)
. ...-++|+.++++.+... .+..++.++||||||.+++.++.++|+.++++|+.+|....... .
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~ 184 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWMARRILNWA 184 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHHHHHHHHHH
Confidence 1 111245565666555443 24578999999999999999999999999999999986532100 0
Q ss_pred -cCCCC--------CcchhhhhccCCC-----------CccCCCCC-------ChhhHHHHhhc--CcccccCCCCCcEE
Q 004141 658 -GTTDI--------PDWCYVESYGSKG-----------KDSFTESP-------SVEDLTRFHSK--SPISHISKVKTPTI 708 (771)
Q Consensus 658 -~~~~~--------~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~--sp~~~~~~i~~P~l 708 (771)
..... ..|.... +.... ...+...+ ........... .....+.++++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~L 263 (330)
T PRK10749 185 EGHPRIRDGYAIGTGRWRPLP-FAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLL 263 (330)
T ss_pred HHhcCCCCcCCCCCCCCCCCC-cCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhccCCCCCEE
Confidence 00000 0000000 00000 00000000 00000000000 11234577899999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHh
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKY 769 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~ 769 (771)
+++|++|.+++++.++.+++.++..+. +++++++|+++|.+..+.. ...+++.|++||+++
T Consensus 264 ii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 264 LLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred EEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987653 4689999999999875544 567889999999875
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-20 Score=181.20 Aligned_cols=204 Identities=23% Similarity=0.311 Sum_probs=141.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-CChhhh---hcCC---CCcc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEAL---QSLP---GKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~-~g~~~~---~~~~---~~~~ 593 (771)
+.+++..|.+ .++.|.||++|+..+. .......++.|+++||.|++||+-+..+ ...... .... ....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999984 3788999999996543 2345567889999999999999764332 001100 0000 0001
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
.....|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|...|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 12357788999999998778889999999999999999998876 67899988777100
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
+ ..+.....++++|+|+++|++|+.++.+....+.+.|++++.++++.+|||++|+|....
T Consensus 134 ---------~----------~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~ 194 (218)
T PF01738_consen 134 ---------P----------PPPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPS 194 (218)
T ss_dssp ---------G----------GGHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTT
T ss_pred ---------C----------CcchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCC
Confidence 0 011233456789999999999999999999999999999999999999999999987533
Q ss_pred -------ChHHHHHHHHHHHHHhh
Q 004141 754 -------SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 -------~~~~~~~~i~~fl~~~L 770 (771)
...+.++++++||++||
T Consensus 195 ~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 195 RPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp STT--HHHHHHHHHHHHHHHCC--
T ss_pred CcccCHHHHHHHHHHHHHHHHhcC
Confidence 34678889999999987
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=177.16 Aligned_cols=233 Identities=11% Similarity=0.051 Sum_probs=150.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECC--CCCCCCCh--hhh------
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFGE--EAL------ 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~--rG~~~~g~--~~~------ 585 (771)
.+.++.+.+|.|++.. .++.|+|+++||.+.+.....+...+..+ ++.||.|++||+ ||.+..+. .|.
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 4667888999998642 45689999999977553221112223344 567999999997 55332111 110
Q ss_pred ---hcCCCCcc--ccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 586 ---QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 586 ---~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
+....... ......+...+..+++. ..++.++++|+|+||||++++.++.++|+.++++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 00000000 01122333444444443 4478899999999999999999999999999999999998764211
Q ss_pred CCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccC--CCCCcEEEEeeCCCCccCc-HHHHHHHHHHHhCCCC
Q 004141 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQYARALREKGVE 736 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~lii~G~~D~~vp~-~~~~~~~~~l~~~g~~ 736 (771)
....... .. +...+. ..+...+|...+. ...+|+++.||+.|+.++. .+...+.++|+++|++
T Consensus 179 -~~~~~~~-~~--------~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~ 244 (275)
T TIGR02821 179 -PWGQKAF-SA--------YLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAAGQA 244 (275)
T ss_pred -cchHHHH-HH--------Hhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHcCCC
Confidence 0000001 11 111111 1122334443333 2468999999999999998 6888999999999999
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++..+|+++|.+.. ....+.+.++|+.+++
T Consensus 245 v~~~~~~g~~H~f~~---~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 245 LTLRRQAGYDHSYYF---IASFIADHLRHHAERL 275 (275)
T ss_pred eEEEEeCCCCccchh---HHHhHHHHHHHHHhhC
Confidence 999999999998763 2356778888887764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=162.61 Aligned_cols=211 Identities=16% Similarity=0.193 Sum_probs=149.7
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
..+|+++||..++ ......+.++|.++||.|.+|.|+|.+-....+.+..+..| ++|+.++.++|.+.+ -+
T Consensus 15 ~~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~g---y~ 85 (243)
T COG1647 15 NRAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAG---YD 85 (243)
T ss_pred CEEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcC---CC
Confidence 3789999996655 55778889999999999999999995544444433333222 789999999999775 36
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhccCCCCccCCCCCChhhHHHHhhc-
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK- 694 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 694 (771)
.|+++|.||||.+++.++.++| .+++|..|+..+....... ...-.| ... ...+.+.........+...
T Consensus 86 eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y--~~~-----~kk~e~k~~e~~~~e~~~~~ 156 (243)
T COG1647 86 EIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEY--FRN-----AKKYEGKDQEQIDKEMKSYK 156 (243)
T ss_pred eEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHH--HHH-----hhhccCCCHHHHHHHHHHhh
Confidence 8999999999999999999988 6777777765543211000 000000 011 1111111111111111111
Q ss_pred ---------------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHH
Q 004141 695 ---------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759 (771)
Q Consensus 695 ---------------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~ 759 (771)
.....++.|..|+|++.|.+|+.||.+.+..+++.... .+.++.++++.||.+.....+.++.
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s--~~KeL~~~e~SgHVIt~D~Erd~v~ 234 (243)
T COG1647 157 DTPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES--DDKELKWLEGSGHVITLDKERDQVE 234 (243)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC--CcceeEEEccCCceeecchhHHHHH
Confidence 12245778899999999999999999999999988865 3578999999999999888888999
Q ss_pred HHHHHHHH
Q 004141 760 LNIGLWFK 767 (771)
Q Consensus 760 ~~i~~fl~ 767 (771)
+.++.||+
T Consensus 235 e~V~~FL~ 242 (243)
T COG1647 235 EDVITFLE 242 (243)
T ss_pred HHHHHHhh
Confidence 99999996
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=184.98 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=155.2
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...++..+.+..+.|. ...+.|+||++||.+.. ...|...+..|+++||.|+++|+||. |.+.........
T Consensus 115 ~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGh---G~S~~~~~~~~~ 186 (395)
T PLN02652 115 FYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGH---GGSDGLHGYVPS 186 (395)
T ss_pred EECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCC---CCCCCCCCCCcC
Confidence 44556677888888885 34456899999997654 33567788899999999999999994 443211100011
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhhhhc---------CC
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------TT 660 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~~~~---------~~ 660 (771)
.....+|+.++++++.... +..+++|+||||||.+++.++. +|+ .++++|+.+|...+..... ..
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~~ 263 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFSL 263 (395)
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHHH
Confidence 1122578888888887552 2357999999999999997764 554 7899999999754321000 00
Q ss_pred CCCcchhhhh--ccCCC-------CccCC------CCCChhhHHHHhhcC--cccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DIPDWCYVES--YGSKG-------KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~~~~~~~~~--~~~~~-------~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
-.+.+.+... .+... ...+. +.............. ....+.++++|+|++||++|.++|++.+
T Consensus 264 ~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~a 343 (395)
T PLN02652 264 VAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLAS 343 (395)
T ss_pred hCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHHH
Confidence 0000000000 00000 00000 000000000000000 1234577899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++++.+... ..++.++++++|.+.......++++.+.+||+.+++
T Consensus 344 ~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 344 QDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred HHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 9998886542 367788999999987666677899999999998763
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=180.70 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=160.8
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+.|||||++|+|...... +.+++|++|+++++..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 47899999999999854321 227899999999988877
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.........+.|||||++ |+|+..+ +...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~r------------dg~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSR------------DGSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECC------------CCCccEEEEcC-----------------CCCcceecccC
Confidence 555566778999999999 9999843 34559999999 77778889999
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+|.|||||++|||.+.+. | ..+||+++++++..+++|.... ....+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~----G----~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG----G----RPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC----C----CcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999885 3 4699999999988877665431 122678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
|||||++|+|....++...+...++.++. .+.++.... ...+.++++++.+++..... .-+.++.....
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~~ 402 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSLD 402 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeecc
Confidence 99999999999865566678888887777 555554443 34578899999999988777 34446655543
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-18 Score=178.30 Aligned_cols=231 Identities=13% Similarity=0.121 Sum_probs=154.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+.+|.|.. ...|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ .....+
T Consensus 68 ~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p~~~ 132 (318)
T PRK10162 68 QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFPQAI 132 (318)
T ss_pred ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCCCcH
Confidence 58889999962 246999999999876543 345567777776 6999999999987653 122358
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCccchhhhhcCC-CCCcch-
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT-DIPDWC- 666 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~~~~~~~~~~-~~~~~~- 666 (771)
+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++.+. +..++++++.+|+.+........ ....+.
T Consensus 133 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~~s~~~~~~~~~~ 212 (318)
T PRK10162 133 EEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVSRRLLGGVWDG 212 (318)
T ss_pred HHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCChhHHHhCCCccc
Confidence 9999999998764 347899999999999999999988642 35688999999987642110000 000000
Q ss_pred hh-hhccCCCCccCCCCCChhhHHHHhhcCccc-ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 667 YV-ESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 667 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
+. ..+. .....+...+. +.. ....+|.. .+...-+|++|++|+.|+++ .+++.++++|+++|++++++++++
T Consensus 213 l~~~~~~-~~~~~y~~~~~--~~~-~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~~aGv~v~~~~~~g 286 (318)
T PRK10162 213 LTQQDLQ-MYEEAYLSNDA--DRE-SPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLAAHQQPCEFKLYPG 286 (318)
T ss_pred cCHHHHH-HHHHHhCCCcc--ccC-CcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHHHcCCCEEEEEECC
Confidence 00 0000 00000000000 000 00112211 11122379999999999987 689999999999999999999999
Q ss_pred CCccCCCC----CChHHHHHHHHHHHHHhhC
Q 004141 745 DVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 745 ~~H~~~~~----~~~~~~~~~i~~fl~~~L~ 771 (771)
..|++... +...+.+..+.+||+++|+
T Consensus 287 ~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 287 TLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred CceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99987632 2245778899999999875
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7e-18 Score=165.63 Aligned_cols=207 Identities=21% Similarity=0.268 Sum_probs=160.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh----hcCC---C
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---G 590 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~----~~~~---~ 590 (771)
+.++.+++..|+ ...+.|+||++|+..+. .......++.|+.+||.|++||+-+..+-..... .... .
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 478999999998 44455999999996554 3467778999999999999999754222111110 0000 0
Q ss_pred Cc-cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 591 KV-GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 591 ~~-~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.. ......|+.+++++|.+++.++.++|+++|+||||.+++.++.+.| .++++++..|..-..
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~~--------------- 149 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIAD--------------- 149 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCCC---------------
Confidence 11 1344789999999999998789999999999999999999998866 789988876642100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
......++++|+|+.+|+.|..+|......+.+.+.++++.+++.+|+++.|+|
T Consensus 150 --------------------------~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 150 --------------------------DTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred --------------------------cccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 001145788999999999999999999999999999998899999999999998
Q ss_pred CCCC----------ChHHHHHHHHHHHHHhhC
Q 004141 750 ERPQ----------SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~----------~~~~~~~~i~~fl~~~L~ 771 (771)
..+. ...+.++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 8542 246788999999999874
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=173.67 Aligned_cols=244 Identities=14% Similarity=0.196 Sum_probs=155.1
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|.++....+.+.. .+..+||++||.... ...|...+..|..+||.|+++|.|| +|.+.+ ...+.
T Consensus 13 ~~~~~d~~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RG---hG~S~r-~~rg~ 82 (298)
T COG2267 13 YFTGADGTRLRYRTWAAPE----PPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRG---HGRSPR-GQRGH 82 (298)
T ss_pred eeecCCCceEEEEeecCCC----CCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCC-CCcCC
Confidence 4556678888888887652 233899999997654 4467788999999999999999999 554431 01111
Q ss_pred cc--ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--hh-c----CCCC
Q 004141 592 VG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV-G----TTDI 662 (771)
Q Consensus 592 ~~--~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~~-~----~~~~ 662 (771)
.. ..-..|+.+.++.+... ....+++|+||||||.+++.++.+++..+.++|+.+|.+.... .. . ....
T Consensus 83 ~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~ 160 (298)
T COG2267 83 VDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKL 160 (298)
T ss_pred chhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccc
Confidence 11 11133444444444332 2356899999999999999999999999999999999887652 10 0 0000
Q ss_pred CcchhhhhccCCC----CccCCCCCChhhHHHHhhcCc-----------------------ccccCCCCCcEEEEeeCCC
Q 004141 663 PDWCYVESYGSKG----KDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 663 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~lii~G~~D 715 (771)
. ......+.... .-.................+| ......+++|+||++|++|
T Consensus 161 ~-~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~D 239 (298)
T COG2267 161 L-GRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGDD 239 (298)
T ss_pred c-cccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCCC
Confidence 0 00000000000 000000000001111111222 1224567899999999999
Q ss_pred CccC-cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHhh
Q 004141 716 LRVP-VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~L 770 (771)
.+++ .+...++++.+... ++++.+++|+.|.+..+... .++++.+.+||.+++
T Consensus 240 ~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~ 295 (298)
T COG2267 240 RVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEAL 295 (298)
T ss_pred ccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhc
Confidence 9999 67766666655432 37899999999998877666 889999999999875
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-18 Score=158.89 Aligned_cols=209 Identities=16% Similarity=0.204 Sum_probs=150.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+..|..+.+..+.|+. ...+++++.||.....+ ........| ...++.|+.+||+|.+.++.. +.+
T Consensus 42 t~rgn~~~~~y~~~~~----~~~~~lly~hGNa~Dlg--q~~~~~~~l~~~ln~nv~~~DYSGyG~S~G~-----psE-- 108 (258)
T KOG1552|consen 42 TSRGNEIVCMYVRPPE----AAHPTLLYSHGNAADLG--QMVELFKELSIFLNCNVVSYDYSGYGRSSGK-----PSE-- 108 (258)
T ss_pred cCCCCEEEEEEEcCcc----ccceEEEEcCCcccchH--HHHHHHHHHhhcccceEEEEecccccccCCC-----ccc--
Confidence 3456677778888752 35699999999643322 111222222 235899999999994443222 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCCcchhhhhcc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~ 672 (771)
....+|+.++.++|.++.. ..++|+|+|+|+|...++.+|.+.| .+++|+.+|+.+....... .....|+
T Consensus 109 ~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~------ 179 (258)
T KOG1552|consen 109 RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF------ 179 (258)
T ss_pred ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee------
Confidence 2458999999999999876 7899999999999999999999988 9999999999876544322 1111000
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....-+..++.+++|+|++||+.|++++..++.+++++.+.. ++..+..|+||.-..
T Consensus 180 -------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~- 236 (258)
T KOG1552|consen 180 -------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIE- 236 (258)
T ss_pred -------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCcccc-
Confidence 001115667788999999999999999999999999998874 777888899997542
Q ss_pred CChHHHHHHHHHHHHHh
Q 004141 753 QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~~ 769 (771)
...++...+..|+...
T Consensus 237 -~~~~yi~~l~~f~~~~ 252 (258)
T KOG1552|consen 237 -LYPEYIEHLRRFISSV 252 (258)
T ss_pred -cCHHHHHHHHHHHHHh
Confidence 2346777787777654
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=169.27 Aligned_cols=241 Identities=18% Similarity=0.187 Sum_probs=151.0
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC---
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~--- 588 (771)
.+.+-+|.+|.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.++...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 4556678999999999985 45789999999995543 11222 2335789999999999999764322211100
Q ss_pred ------------CCC-ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-chh
Q 004141 589 ------------PGK-VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA 654 (771)
Q Consensus 589 ------------~~~-~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~~ 654 (771)
+.. +....+.|+..++++|.+++.+|++||++.|.|.||.+++.+++..+ +++++++..|.. |..
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 000 01123579999999999999999999999999999999999999865 699888888854 444
Q ss_pred hhhcCCC-CCcchhhhhccCCCCccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 655 LMVGTTD-IPDWCYVESYGSKGKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 655 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
....... ...+.....+.. .....+. .+..+.+...+....+++|++|+++..|-.|+.|||+.....|+++.
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~ 289 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIP 289 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--
T ss_pred hhhhcCCccccHHHHHHHHh----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccC
Confidence 3322111 111110000000 0000111 12234455667778899999999999999999999999999999886
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
. +.++.+||..+|... ......+.++||.+|
T Consensus 290 ~---~K~l~vyp~~~He~~----~~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 290 G---PKELVVYPEYGHEYG----PEFQEDKQLNFLKEH 320 (320)
T ss_dssp S---SEEEEEETT--SSTT----HHHHHHHHHHHHHH-
T ss_pred C---CeeEEeccCcCCCch----hhHHHHHHHHHHhcC
Confidence 5 489999999999764 223367899999875
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=182.55 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=148.0
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--CC------------CCeEEEEE
Q 004141 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--AN------------PSKVTVVG 622 (771)
Q Consensus 557 ~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--~d------------~~ri~l~G 622 (771)
...++|+.+||+|+.+|.||.+++++.+ ...+..+.+|..++|+|+..+.. .| ..||+++|
T Consensus 270 ~~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G 344 (767)
T PRK05371 270 SLNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTG 344 (767)
T ss_pred hHHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEE
Confidence 3457899999999999999987765542 22445678999999999985421 12 57999999
Q ss_pred cChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC----cch------hhhhccCC--CCccCC----------
Q 004141 623 GSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVESYGSK--GKDSFT---------- 680 (771)
Q Consensus 623 ~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~----~~~------~~~~~~~~--~~~~~~---------- 680 (771)
.||||++++.+|...|+.++++|..+++.++..++...... .|. +....... ....+.
T Consensus 345 ~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~ 424 (767)
T PRK05371 345 KSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLL 424 (767)
T ss_pred EcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHH
Confidence 99999999999998889999999999988765433211100 010 00000000 000000
Q ss_pred -------CCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 681 -------ESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 681 -------~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
........+.|...++...++++++|+|++||..|.++++.++.+++++|++.+++.++++.++ +|......
T Consensus 425 ~~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~ 503 (767)
T PRK05371 425 AELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNW 503 (767)
T ss_pred hhhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCch
Confidence 0000011233455677788899999999999999999999999999999999898999877755 78665444
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
...++.+.+++||++||+
T Consensus 504 ~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 504 QSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred hHHHHHHHHHHHHHhccc
Confidence 556788999999999985
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=159.49 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=133.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC----CChhhhhcCCCCccccc-------hhhHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG----FGEEALQSLPGKVGSQD-------VNDVLT 602 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~----~g~~~~~~~~~~~~~~~-------~~D~~~ 602 (771)
....|+||++||.+.+ ...+...+..|...++.+..+.++|... .|..|.... ....... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 4457899999997665 3457778888887776555666665321 123332110 0000111 223445
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCC
Q 004141 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 682 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (771)
.++++.++..++.++|+++|+|+||.+++.++.++|+.++++++.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~--------~--------------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA--------S--------------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc--------c--------------------c
Confidence 56666666668889999999999999999999888988888776655310 0 0
Q ss_pred CChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHH
Q 004141 683 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 683 ~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i 762 (771)
+. ....++|+|++||++|++||++.++++++.|++.|.+++++.|++++|.+. .+....+
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~-----~~~~~~~ 201 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAID-----PRLMQFA 201 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCC-----HHHHHHH
Confidence 00 011358999999999999999999999999999999999999999999986 4677888
Q ss_pred HHHHHHhh
Q 004141 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~fl~~~L 770 (771)
.+||.+.|
T Consensus 202 ~~~l~~~l 209 (232)
T PRK11460 202 LDRLRYTV 209 (232)
T ss_pred HHHHHHHc
Confidence 89998876
|
|
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-16 Score=165.92 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=131.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.. ...|...+..|.+.||.|+++|+|| ||.+.. +........+++.+.+..++++ ++.+
T Consensus 46 ~~~lvliHG~~~~--~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~---~~~~~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPSW--SYLYRKMIPILAAAGHRVIAPDLIG---FGRSDK---PTRREDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCCc--hhhHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCcccCCHHHHHHHHHHHHHH--cCCC
Confidence 4789999997644 4468888888988899999999999 555421 1111122345555555555544 2456
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh------hh---cC-CCCCcchhhh----hccC----CCCcc
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------MV---GT-TDIPDWCYVE----SYGS----KGKDS 678 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~------~~---~~-~~~~~~~~~~----~~~~----~~~~~ 678 (771)
++.++||||||.++..++.++|++++++|+.++...... +. .. ...+...... .... .....
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 899999999999999999999999999998886421100 00 00 0000000000 0000 00000
Q ss_pred CCCCCChh---h-HHHH---hhcC-----------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 679 FTESPSVE---D-LTRF---HSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 679 ~~~~~~~~---~-~~~~---~~~s-----------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
+......+ . ...+ .... -...+.++++|+|+++|++|..+|... +++.+.+.+. ..+++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 00000000 0 0000 0000 012356789999999999999999765 6666666542 113477
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 741 VFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++||...... ...+.+.+.+||+++
T Consensus 274 ~i~~~gH~~~~e~-p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQEDS-GEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccchhhC-hHHHHHHHHHHHhcC
Confidence 8999999876444 468889999999865
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=168.77 Aligned_cols=233 Identities=21% Similarity=0.286 Sum_probs=157.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+..+...+|.| ........|+||++|||++........ .....+...|+.|+++|||-.+++ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466789998 223556789999999999877655333 344566789999999999987664 2334
Q ss_pred chhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 596 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
.++|+.+++.|+.++. .+|+++|+|+|+|.||++++.++....+ ..++.++++|..+... . ......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~-~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-S-AASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-c-ccchhhcCCc
Confidence 5899999999999763 4889999999999999999999876433 5688999999987664 1 1111000000
Q ss_pred hhccCC-----CCccCCCCCChhhHHHHhhcCcccc--cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 669 ESYGSK-----GKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 669 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+... ....+.... .+ ......+|+.. +.. -+|++|++|+.|.+.+ +++.+.++|+++|+++++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~--~~-~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAA--PD-REDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred cccCHHHHHHHHHHHhCcCc--cc-cCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 000000 000000000 00 00012344432 233 4789999999999996 89999999999999999999
Q ss_pred eCCCCccCCCCC--ChHHHHHHHHHHHHHhh
Q 004141 742 FPNDVHGIERPQ--SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~--~~~~~~~~i~~fl~~~L 770 (771)
+++..|.|.... .....+.++..|+...+
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~~~ 311 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRAAL 311 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHHhc
Confidence 999999884322 23455677888877543
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=156.53 Aligned_cols=192 Identities=18% Similarity=0.150 Sum_probs=124.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCCCCCCCChhh--hhcCCCCccccch
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d~rG~~~~g~~~--~~~~~~~~~~~~~ 597 (771)
+++|.|++. .+++|+||++||++.... .+. .....+.+.||.|++||++|.++.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~--~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTAS--AYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHH--HHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 368889863 467899999999776532 121 1344555689999999999865432221 1111112233457
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
.++...++++.++..+|++||+|+|+|+||++++.++.++|++++++++.++...... ... ......
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~----~~~-----~~~~~~---- 143 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEA----SSS-----ISATPQ---- 143 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCccccc----ccc-----hhhHhh----
Confidence 8888999999888778999999999999999999999999999999988876531110 000 000000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
................. .....+..+|++|+||++|.+||++.++++++++++.
T Consensus 144 -~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 144 -MCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred -cCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 00001111111111110 1112233456889999999999999999999999885
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=160.80 Aligned_cols=231 Identities=19% Similarity=0.256 Sum_probs=158.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---CcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+..++|+|.......+.|+|||+|||++...+ ..|......+ .+.+..|+++|||-++++ ....
T Consensus 73 ~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh-----------~~Pa 141 (336)
T KOG1515|consen 73 NLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEH-----------PFPA 141 (336)
T ss_pred CeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCC-----------CCCc
Confidence 377889999876554789999999999987653 4555566665 678999999999987764 3334
Q ss_pred chhhHHHHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCccchhhhhcCC-----
Q 004141 596 DVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTT----- 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~~~~~~~~~~----- 660 (771)
.++|+..++.|+.++ ..+|++||+|+|-|.||.+|..++.+. +..+++.|++.|++.........
T Consensus 142 ~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~e~~~~~ 221 (336)
T KOG1515|consen 142 AYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTESEKQQNL 221 (336)
T ss_pred cchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCHHHHHhh
Confidence 589999999999885 458999999999999999999988753 34689999999987654322110
Q ss_pred CC---CcchhhhhccCCCCccCCCCCChhhHHHHhhcCccc-----ccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 661 DI---PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 661 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
+. ..+.....+.. ...|...........+|.. ..... -+|+|++.++.|... .++..+.++|+
T Consensus 222 ~~~~~~~~~~~~~~w~------~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~Lk 293 (336)
T KOG1515|consen 222 NGSPELARPKIDKWWR------LLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKLK 293 (336)
T ss_pred cCCcchhHHHHHHHHH------HhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHHH
Confidence 00 00000000000 0000000000000112222 11122 356999999999888 89999999999
Q ss_pred hCCCCEEEEEeCCCCccCCC--C--CChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIER--P--QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~--~--~~~~~~~~~i~~fl~~~ 769 (771)
+.|++++++.++++.|++.. + ....+.+..+.+|+++.
T Consensus 294 k~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 294 KAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 99999999999999998653 2 23456777888888764
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=169.38 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=144.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.||..+....+.+.........|+||++||..++.. ..| ...+..+.++||.|+++|+||.++. ... .+..+..
T Consensus 79 ~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~-~~y~~~~~~~~~~~g~~vv~~d~rG~G~s---~~~-~~~~~~~ 153 (388)
T PLN02511 79 PDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSD-DSYVRHMLLRARSKGWRVVVFNSRGCADS---PVT-TPQFYSA 153 (388)
T ss_pred CCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCC-CHHHHHHHHHHHHCCCEEEEEecCCCCCC---CCC-CcCEEcC
Confidence 455666644443321112345689999999765532 223 3456667789999999999995443 211 1111222
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCc--eeEEEecCCccchhhh----hcC-CCCCcchh
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALM----VGT-TDIPDWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~p~~~~~~~----~~~-~~~~~~~~ 667 (771)
...+|+.++++++..+. ...++.++||||||.+++.++.++++. +.+++++++..++... ... .......+
T Consensus 154 ~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~ 231 (388)
T PLN02511 154 SFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDKAL 231 (388)
T ss_pred CchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHHHH
Confidence 34789999999998763 346899999999999999999999876 6777766655443110 000 00000000
Q ss_pred h-------h----hcc------------C-C--------CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 668 V-------E----SYG------------S-K--------GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 ~-------~----~~~------------~-~--------~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
. . .+. . . ......+.. ...+.|...++...+.+|++|+|+|+|++|
T Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~dD 309 (388)
T PLN02511 232 AKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAAND 309 (388)
T ss_pred HHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcCCC
Confidence 0 0 000 0 0 000000111 111223456677788999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh-----HHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD-----FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~-----~~~~~~i~~fl~~~L 770 (771)
+++|++.... .+.....++++++++++||........ .-..+.+.+||+...
T Consensus 310 pi~p~~~~~~---~~~~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~ 366 (388)
T PLN02511 310 PIAPARGIPR---EDIKANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALE 366 (388)
T ss_pred CcCCcccCcH---hHHhcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9998764321 122223458999999999975543321 124567888887653
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=163.75 Aligned_cols=217 Identities=18% Similarity=0.233 Sum_probs=127.3
Q ss_pred CcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 537 DPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|.||++||.+.... +..+...+..+++.||.|+++|+|| +|.+..............+|+.+.++. .+.
T Consensus 30 ~~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~------l~~ 100 (282)
T TIGR03343 30 GEAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDA------LDI 100 (282)
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHH------cCC
Confidence 367999999664421 1122234556778899999999999 555432110111111123444444433 256
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccC-CCCccCCC-
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGS-KGKDSFTE- 681 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~-~~~~~~~~- 681 (771)
+++.++||||||.+++.++.++|++++++|+.+|............ .+.......+.. ........
T Consensus 101 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (282)
T TIGR03343 101 EKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLIT 180 (282)
T ss_pred CCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCc
Confidence 7899999999999999999999999999999887421100000000 000000000000 00000000
Q ss_pred -----------CCChhhHHHHh---------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 682 -----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 682 -----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.........+. ..+....+.++++|+|+++|++|..++++.++++.+.+. ++++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~ 256 (282)
T TIGR03343 181 EELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHV 256 (282)
T ss_pred HHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEE
Confidence 00000000110 001122466889999999999999999988888877765 378899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++++||.... +....+.+.+.+||+
T Consensus 257 i~~agH~~~~-e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 257 FSRCGHWAQW-EHADAFNRLVIDFLR 281 (282)
T ss_pred eCCCCcCCcc-cCHHHHHHHHHHHhh
Confidence 9999998764 444577888889985
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.5e-17 Score=145.20 Aligned_cols=224 Identities=20% Similarity=0.277 Sum_probs=158.5
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+....|..++++|+..- +...|+++++|+..++.+ .....++ .+.+.+..|+.++||| ||.+.. .+.
T Consensus 58 ~l~T~D~vtL~a~~~~~-----E~S~pTlLyfh~NAGNmG--hr~~i~~~fy~~l~mnv~ivsYRG---YG~S~G--sps 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLS-----ESSRPTLLYFHANAGNMG--HRLPIARVFYVNLKMNVLIVSYRG---YGKSEG--SPS 125 (300)
T ss_pred EEEcCcceeEeeeeecc-----cCCCceEEEEccCCCccc--chhhHHHHHHHHcCceEEEEEeec---cccCCC--Ccc
Confidence 44566788999999982 347899999999776543 2223333 5578899999999999 665421 122
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
+.| -.-|..++++|+..++..|..+++++|.|.||..|+++|++..+++.|+++.+-+.+...+.-..-.+
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p------- 196 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFP------- 196 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheecc-------
Confidence 222 25688999999999999999999999999999999999999999999999998887664332111000
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+.. +. .+.+..... ++....+...+.|.|++.|.+|.+|||.+.+++|+..... ..++..||++.|+-.
T Consensus 197 ~~~---k~---i~~lc~kn~---~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT 265 (300)
T KOG4391|consen 197 FPM---KY---IPLLCYKNK---WLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDT 265 (300)
T ss_pred chh---hH---HHHHHHHhh---hcchhhhccccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCce
Confidence 000 00 000111111 2222334466789999999999999999999999887654 357889999999743
Q ss_pred CCCChHHHHHHHHHHHHHh
Q 004141 751 RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~~~ 769 (771)
-.. ..+++.+.+|+.+.
T Consensus 266 ~i~--dGYfq~i~dFlaE~ 282 (300)
T KOG4391|consen 266 WIC--DGYFQAIEDFLAEV 282 (300)
T ss_pred EEe--ccHHHHHHHHHHHh
Confidence 222 25788899998764
|
|
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=163.29 Aligned_cols=225 Identities=14% Similarity=0.110 Sum_probs=137.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.++..........+..|.++||.|+++|+||.++..... .........+|+..+++++.++.
T Consensus 55 ~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~-- 128 (324)
T PRK10985 55 ARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIYHSGETEDARFFLRWLQREF-- 128 (324)
T ss_pred CCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceECCCchHHHHHHHHHHHHhC--
Confidence 345799999999765532222345678899999999999999964432111 11111234789999999998763
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCc--eeEEEecCCccchhhhhcCC-C----CCcchhh-----------hhccC--
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTT-D----IPDWCYV-----------ESYGS-- 673 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~--~~~~v~~~p~~~~~~~~~~~-~----~~~~~~~-----------~~~~~-- 673 (771)
...+++++||||||.+++.+++++++. +.++|++++..++....... . .....+. ..+..
T Consensus 129 ~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 208 (324)
T PRK10985 129 GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQRYLLNLLKANAARKLAAYPGTL 208 (324)
T ss_pred CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346799999999999888888776543 77777777765432110000 0 0000000 00000
Q ss_pred ------------------CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 674 ------------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 674 ------------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
.....+.+. ....+.+...++...+.++++|+|+|+|++|++++++....+.+ ...
T Consensus 209 ~~~~~~~~~~~~~~~fd~~~~~~~~g~--~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~ 282 (324)
T PRK10985 209 PINLAQLKSVRRLREFDDLITARIHGF--ADAIDYYRQCSALPLLNQIRKPTLIIHAKDDPFMTHEVIPKPES----LPP 282 (324)
T ss_pred cCCHHHHhcCCcHHHHhhhheeccCCC--CCHHHHHHHCChHHHHhCCCCCEEEEecCCCCCCChhhChHHHH----hCC
Confidence 000000011 11233344556666788999999999999999998766554432 223
Q ss_pred CEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHhh
Q 004141 736 ETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~L 770 (771)
++++++++++||..... ....-..+.+++||+.++
T Consensus 283 ~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~ 321 (324)
T PRK10985 283 NVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYL 321 (324)
T ss_pred CeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhh
Confidence 57889999999974432 122234456888997765
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=162.45 Aligned_cols=245 Identities=14% Similarity=0.164 Sum_probs=144.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--------------------cc----hHHHHHHHHCCcEE
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 569 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~G~~V 569 (771)
.+.+|..+..+.+.|+ .++.+|+++||.+...... .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 3457888988888774 3568999999954433211 11 35688999999999
Q ss_pred EEECCCCCCCCChhhhhcCCCCcc--ccchhhHHHHHHHHHHc------------------CCCCCCeEEEEEcChhHHH
Q 004141 570 LIVNYRGSLGFGEEALQSLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGFL 629 (771)
Q Consensus 570 v~~d~rG~~~~g~~~~~~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~ri~l~G~S~GG~~ 629 (771)
+++|+||.+..... ....+... ..-++|+...++.+.+. ..-...+++|+||||||.+
T Consensus 78 ~~~D~rGHG~S~~~--~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 78 YGLDLQGHGESDGL--QNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred EEecccccCCCccc--cccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 99999994432211 00011111 11246666666665441 0111357999999999999
Q ss_pred HHHHHhhCCC--------ceeEEEecCCccchhhhhcC--CCCCcch--hh---hhccC--------------CCCccCC
Q 004141 630 TTHLIGQAPD--------KFVAAAARNPLCNLALMVGT--TDIPDWC--YV---ESYGS--------------KGKDSFT 680 (771)
Q Consensus 630 a~~~a~~~p~--------~~~~~v~~~p~~~~~~~~~~--~~~~~~~--~~---~~~~~--------------~~~~~~~ 680 (771)
++.++.++++ .++++|+.+|.+.+...... ...+.+. .. ..+.. .....+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 235 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYVNDIIK 235 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhhhhHHh
Confidence 9998865432 58888888887533110000 0000000 00 00000 0000000
Q ss_pred -------CCCChhhHHHHhhcCc--ccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 681 -------ESPSVEDLTRFHSKSP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 681 -------~~~~~~~~~~~~~~sp--~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..........+..... ...+..+ ++|+|+++|++|.+++++.++.+++.+.. .++++.++++++|.+
T Consensus 236 ~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i 313 (332)
T TIGR01607 236 FDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVI 313 (332)
T ss_pred cCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCC
Confidence 0001111111111100 1133445 68999999999999999998888776543 246788999999998
Q ss_pred CCCCChHHHHHHHHHHHH
Q 004141 750 ERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~ 767 (771)
.......++++.+.+||+
T Consensus 314 ~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 314 TIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred ccCCCHHHHHHHHHHHhh
Confidence 877667789999999986
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=149.23 Aligned_cols=334 Identities=15% Similarity=0.157 Sum_probs=206.3
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC---CC
Q 004141 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP---EN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~---~~ 121 (771)
++|.+ -|.+|.|+... ++|.+++ ..+++.+||+.- +-+..|.+||||+++||.+-- ..
T Consensus 44 l~PDI--~GD~IiFt~~D----------dlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~ 104 (668)
T COG4946 44 LNPDI--YGDRIIFTCCD----------DLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSL 104 (668)
T ss_pred cCCcc--cCcEEEEEech----------HHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCC
Confidence 45544 47788998643 7888776 344778887663 668899999999999995532 22
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC-----CC---------C
Q 004141 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL-----GS---------T 186 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~-----~~---------~ 186 (771)
...++|.+. .+|+.+++|....... .-.-|+|||+.|++.-... +- +.|.. .+ +
T Consensus 105 ~taDly~v~~e~Ge~kRiTyfGr~fT---------~VaG~~~dg~iiV~TD~~t-PF-~q~~~lYkv~~dg~~~e~LnlG 173 (668)
T COG4946 105 QTADLYVVPSEDGEAKRITYFGRRFT---------RVAGWIPDGEIIVSTDFHT-PF-SQWTELYKVNVDGIKTEPLNLG 173 (668)
T ss_pred ccccEEEEeCCCCcEEEEEEeccccc---------eeeccCCCCCEEEEeccCC-Cc-ccceeeeEEccCCceeeeccCC
Confidence 556799998 8899999998732221 2345999999887742111 10 00000 00 0
Q ss_pred C------------CCCCCccCCCCCC------------------------------------c------------ccccC
Q 004141 187 K------------GGSSDKDCNSWKG------------------------------------Q------------GDWEE 206 (771)
Q Consensus 187 ~------------~~~~~~~~~~~~~------------------------------------~------------~~~~~ 206 (771)
+ .++...+-+.|++ . .+|+-
T Consensus 174 pathiv~~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSv 253 (668)
T COG4946 174 PATHIVIKDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSV 253 (668)
T ss_pred ceeeEEEeCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEe
Confidence 0 0000001111110 0 00111
Q ss_pred Cc----------------------CcccCCccCceEEEEEccCCceeecc-CCCCCCccceE----------EEec-CCC
Q 004141 207 DW----------------------GETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQV----------VWAP-LNE 252 (771)
Q Consensus 207 d~----------------------g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~----------~wsp-Dg~ 252 (771)
|. |..++.....+||++|.++..++.|. +.|-.....++ -||+ +|.
T Consensus 254 dldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd 333 (668)
T COG4946 254 DLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD 333 (668)
T ss_pred ccCCchhhhcCCchhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc
Confidence 11 33344445578999999988887774 22221111110 1222 566
Q ss_pred CCccEEEEEeecCc-------------ceeeeeee------------eccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 253 GLHQYLVFVGWSSE-------------TRKLGIKY------------CYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 253 ~~~~~l~~~~~~~~-------------~~~~g~~~------------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
. |++++.-.. ..+.|..| -.+....|-++|. .++
T Consensus 334 ~----ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~-----------------~~~ 392 (668)
T COG4946 334 Y----IALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK-----------------DGG 392 (668)
T ss_pred E----EEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEec-----------------CCc
Confidence 6 777763211 11112211 1112224555665 788
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.+++....+.+.....|||||+++.. ++ ..+||++|+++|..+.+......
T Consensus 393 e~kr~e~~lg~I~av~vs~dGK~~vva-Nd----------r~el~vididngnv~~idkS~~~----------------- 444 (668)
T COG4946 393 EVKRIEKDLGNIEAVKVSPDGKKVVVA-ND----------RFELWVIDIDNGNVRLIDKSEYG----------------- 444 (668)
T ss_pred eEEEeeCCccceEEEEEcCCCcEEEEE-cC----------ceEEEEEEecCCCeeEecccccc-----------------
Confidence 889998889999999999999987643 33 36899999999988666444322
Q ss_pred cCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCe
Q 004141 388 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~ 459 (771)
-+..+.|+|+++.|.++-..+ -..+|-.+|++++++..+|.+.+....++|++|+++|+|++...-.|+.
T Consensus 445 --lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 445 --LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred --eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEeccccCCCC
Confidence 234678999999888776533 2345777899999999999877655568999999999999877766653
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-16 Score=162.83 Aligned_cols=219 Identities=17% Similarity=0.170 Sum_probs=132.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--CccccchhhHHHHHHHHHHcCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--KVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~--~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+.+ ...|...+..|+.. |.|+++|+|| +|.+....... .......+++...+..+++.. ..
T Consensus 30 ~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG---~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 30 PALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLG---YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCC---CCCCCCCccccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 789999997765 44788888888766 7999999999 55443211000 001234556665555555442 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC--------------Ccc--hhhh----------
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI--------------PDW--CYVE---------- 669 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~--------------~~~--~~~~---------- 669 (771)
+++.|+||||||.+++.++.++|++++++|+.++............. ..+ .+..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKN 181 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHH
Confidence 78999999999999999999999999999998875321000000000 000 0000
Q ss_pred ----hccCC-CC-----ccCC---CCCC-hhhHHHHhhcC----cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 670 ----SYGSK-GK-----DSFT---ESPS-VEDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 670 ----~~~~~-~~-----~~~~---~~~~-~~~~~~~~~~s----p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
.+... .. ..+. ..+. ......+.... ....+.++++|+|+++|++|..+|.+.++.+.+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~- 260 (294)
T PLN02824 182 ILCQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD- 260 (294)
T ss_pred HHHHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC-
Confidence 00000 00 0000 0000 00000111111 12346778999999999999999988776644332
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
...++++++++||.... +....+...+.+||+++
T Consensus 261 ---~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 ---AVEDFIVLPGVGHCPQD-EAPELVNPLIESFVARH 294 (294)
T ss_pred ---CccceEEeCCCCCChhh-hCHHHHHHHHHHHHhcC
Confidence 23688999999997664 44557889999999764
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=158.67 Aligned_cols=229 Identities=12% Similarity=0.141 Sum_probs=137.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++++.... +...+.||++||.+.+ ...|...+..|.+ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~~ 73 (276)
T TIGR02240 10 DGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPYR 73 (276)
T ss_pred CCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcCc
Confidence 566776655321 1223579999996655 3467777777754 79999999999 55543211 1123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-------CCCCCcc---h
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDW---C 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-------~~~~~~~---~ 666 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++......... ....... .
T Consensus 74 ~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T TIGR02240 74 FPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQPS 151 (276)
T ss_pred HHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhccc
Confidence 44444444444444 2456799999999999999999999999999999987653210000 0000000 0
Q ss_pred ----h-hhhccCCC------CccCC----CCCChhhH-H--HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 667 ----Y-VESYGSKG------KDSFT----ESPSVEDL-T--RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 667 ----~-~~~~~~~~------~~~~~----~~~~~~~~-~--~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
. ...+.... ...+. ........ . ..........+.++++|+|+++|++|+.+|++.++++.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~~ 231 (276)
T TIGR02240 152 HGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLAW 231 (276)
T ss_pred cccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHHH
Confidence 0 00000000 00000 00000000 0 001111223467889999999999999999998888877
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
.+.. .+++++++ ||..... ...++.+.+.+|+++.
T Consensus 232 ~~~~----~~~~~i~~-gH~~~~e-~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 232 RIPN----AELHIIDD-GHLFLIT-RAEAVAPIIMKFLAEE 266 (276)
T ss_pred hCCC----CEEEEEcC-CCchhhc-cHHHHHHHHHHHHHHh
Confidence 7643 57777865 9986654 4568889999999864
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-16 Score=158.32 Aligned_cols=216 Identities=15% Similarity=0.257 Sum_probs=131.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.+.|+||++||.+.+ ...|...+..|. +||.|+++|+||. |.+.... ......++....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G~---G~S~~~~----~~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRGT---GRSPGEL----PPGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCCC---CCCCCCC----cccCCHHHHHHHHHHHHHH--hC
Confidence 346889999997655 335656666664 5799999999994 4432110 1112345555444444444 24
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----------cCCCCCcc-------hhhhhccCCCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDW-------CYVESYGSKGK 676 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~ 676 (771)
.+++.++||||||.+++.++.++|+.++++|+.++........ .......+ .+...+.....
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 5789999999999999999999999999999888754321000 00000000 00000000000
Q ss_pred --------ccCCCCCChh----hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 677 --------DSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 677 --------~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.......... ....+...+....+.++++|+|+++|++|..+|++.+.++++.+.. .+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN----AQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC----ceEEEECC
Confidence 0000000000 0011122233345678899999999999999999988888776643 67888999
Q ss_pred CCccCCCCCChHHHHHHHHHHHH
Q 004141 745 DVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+||.+... ...++.+.+.+||+
T Consensus 235 ~gH~~~~~-~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNVT-DPETFNRALLDFLK 256 (257)
T ss_pred CCCCcccc-CHHHHHHHHHHHhc
Confidence 99987644 45577888888885
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=148.99 Aligned_cols=225 Identities=18% Similarity=0.230 Sum_probs=138.0
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+.+..|+|+++||.|.. +..|+.++..|+.+||+|+++|+|| ||.+.. +.......+..+...+..+++.
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~---P~~~~~Yt~~~l~~di~~lld~-- 109 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDA---PPHISEYTIDELVGDIVALLDH-- 109 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCC---CCCcceeeHHHHHHHHHHHHHH--
Confidence 44567999999998876 5578899999999999999999999 666543 3332333444444444444443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-----hhhcCCCCCcchh--hhhccC-C----------
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-----LMVGTTDIPDWCY--VESYGS-K---------- 674 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-----~~~~~~~~~~~~~--~~~~~~-~---------- 674 (771)
+.-+|+.|+||+||+.+|..++..+|+++.+.|+.+...... ......-..++.. ....+. .
T Consensus 110 Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~ 189 (322)
T KOG4178|consen 110 LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEM 189 (322)
T ss_pred hccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHH
Confidence 125799999999999999999999999999999877544310 0000000000000 000000 0
Q ss_pred --------CCccCCCC-------C---ChhhH-------------------HHHhhcCc--ccccCCCCCcEEEEeeCCC
Q 004141 675 --------GKDSFTES-------P---SVEDL-------------------TRFHSKSP--ISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 675 --------~~~~~~~~-------~---~~~~~-------------------~~~~~~sp--~~~~~~i~~P~lii~G~~D 715 (771)
........ + ++++. ..+....+ .....++++|++++.|+.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D 269 (322)
T KOG4178|consen 190 LVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLD 269 (322)
T ss_pred hHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCc
Confidence 00000000 0 01111 11112211 2345678899999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
...+...-.+.+++.-.. -.+.++++++||....++ ..++.+.++.||++..
T Consensus 270 ~v~~~p~~~~~~rk~vp~--l~~~vv~~~~gH~vqqe~-p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 270 PVLPYPIFGELYRKDVPR--LTERVVIEGIGHFVQQEK-PQEVNQAILGFINSFS 321 (322)
T ss_pred ccccchhHHHHHHHhhcc--ccceEEecCCcccccccC-HHHHHHHHHHHHHhhc
Confidence 998866323333332221 136788999999776544 4589999999999864
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=154.82 Aligned_cols=214 Identities=17% Similarity=0.153 Sum_probs=129.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC-Ce
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 617 (771)
+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... .. .....+++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G---~G~S~~~--~~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTG---AGISLTD--SN--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCc---CCCCCCC--cc--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 59999997765 4468888889988999999999999 5544211 11 112345555444444443 223 58
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc---ch---hhhh--cCCCCCcchh--hhhccCC---------CC-c
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NL---ALMV--GTTDIPDWCY--VESYGSK---------GK-D 677 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~---~~---~~~~--~~~~~~~~~~--~~~~~~~---------~~-~ 677 (771)
+.++||||||.+++.++.++|++++++|+.++.. .. .... .......|.. ....... .. .
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 9999999999999999999999999999887642 10 0000 0000000000 0000000 00 0
Q ss_pred cCCCCCChhhHHHH---hhcCcc----------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 678 SFTESPSVEDLTRF---HSKSPI----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 ~~~~~~~~~~~~~~---~~~sp~----------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+......+..... ....+. ..+.++++|+|+++|++|..+|++.++.+.+.+.. .+++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~----a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPP----AQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCc----ceEEEecC
Confidence 00000000000000 000000 12346899999999999999999888888776654 67889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHH
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+||.+.. +...++...+.+|++.
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHH
Confidence 9998775 4445788888888765
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-16 Score=146.50 Aligned_cols=240 Identities=17% Similarity=0.197 Sum_probs=156.6
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh----hhh
Q 004141 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE----ALQ 586 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~----~~~ 586 (771)
.++..-.|.+|.||++.|+. ..++.|+||-.||-.+..+ ....+-.++..||+|+..|.||.+++..+ ...
T Consensus 59 vTf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g---~~~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~ 133 (321)
T COG3458 59 VTFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG---EWHDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGG 133 (321)
T ss_pred EEEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC---CccccccccccceeEEEEecccCCCccccCCCCCCC
Confidence 36777789999999999984 3388999999999444322 12233456789999999999997665221 111
Q ss_pred -cCCCC------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch
Q 004141 587 -SLPGK------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 587 -~~~~~------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~ 653 (771)
..++. +....+.|+..+++-+.....+|.+||++.|.|.||.+++.+++.. .+++++++..|...-
T Consensus 134 ~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~d 212 (321)
T COG3458 134 PSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSD 212 (321)
T ss_pred CcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhccccccccccc
Confidence 11111 0112356888999999888889999999999999999999998875 479999999997542
Q ss_pred h-hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004141 654 A-LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 654 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
. ..........+.....|.. ....+..+..+.+...+....+.+++.|+|+..|-.|++|||......++++..
T Consensus 213 f~r~i~~~~~~~ydei~~y~k-----~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 213 FPRAIELATEGPYDEIQTYFK-----RHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred chhheeecccCcHHHHHHHHH-----hcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 2 1111100000000000000 001111122333334455567889999999999999999999998999988865
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
. .++.+||.-+|.-. +. -..+++..|++.
T Consensus 288 ~---K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~ 316 (321)
T COG3458 288 S---KTIEIYPYFAHEGG-PG---FQSRQQVHFLKI 316 (321)
T ss_pred C---ceEEEeeccccccC-cc---hhHHHHHHHHHh
Confidence 3 56667777778543 21 123345666653
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4e-15 Score=154.58 Aligned_cols=216 Identities=16% Similarity=0.220 Sum_probs=130.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.+ .|+++|+|| +|.+.... . .....+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~--~---~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD--I---DYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC--C---CCCHHHHHHHHHHHHHH--hCCC
Confidence 3689999997765 446778888888875 999999999 55543211 1 12344544444444444 2347
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------------hcCCCCCcchhh--hhccCCC-CccCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VGTTDIPDWCYV--ESYGSKG-KDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~-~~~~~ 680 (771)
++.++|||+||.+++.++.++|++++++|+.++....... ............ ..+.... ...+.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRSPGEGEEMVLEENVFIERVLPGSIL 173 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhCcccccccccchhhHHhhcccCccc
Confidence 8999999999999999999999999999998874321000 000000000000 0000000 00000
Q ss_pred CCCChhhHHHH-----------------hhcC--------------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 681 ESPSVEDLTRF-----------------HSKS--------------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~~~~~~~~~-----------------~~~s--------------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+....+ .... ....+.++++|+|+|+|++|..+++....++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 253 (295)
T PRK03592 174 RPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDVPKLLINAEPGAILTTGAIRDWCRS 253 (295)
T ss_pred ccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCCCeEEEeccCCcccCcHHHHHHHHH
Confidence 00000000000 0000 0122466899999999999999966666565544
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+.. +.++.+++++||..... ...++.+.+.+|+++.
T Consensus 254 ~~~---~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~~~ 289 (295)
T PRK03592 254 WPN---QLEITVFGAGLHFAQED-SPEEIGAAIAAWLRRL 289 (295)
T ss_pred hhh---hcceeeccCcchhhhhc-CHHHHHHHHHHHHHHh
Confidence 332 36888999999987744 4568889999999865
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-15 Score=154.78 Aligned_cols=217 Identities=15% Similarity=0.146 Sum_probs=126.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
.....|+||++||.+.+ ...|...+..|+ .+|.|+.+|+|| +|.+.. ... ..+++..+.+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~s~~---~~~---~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRN---HGLSPR---DPV---MNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCC---CCCCCC---CCC---CCHHHHHHHHHHHHHH--
Confidence 44456889999997665 345666677774 579999999999 444321 111 1233333333333332
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-chh-----hhh----c--CCCCCcchh-hh----hccCCC
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLA-----LMV----G--TTDIPDWCY-VE----SYGSKG 675 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~~-----~~~----~--~~~~~~~~~-~~----~~~~~~ 675 (771)
+..+++.|+||||||.+++.++.++|++++++|+.++.. ... .+. . ......+.. .. ......
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234679999999999999999999999999998864321 100 000 0 000000000 00 000000
Q ss_pred -----CccCCCCC----ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 676 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 676 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
...+.... .......+........+..+++|+|+++|++|..++.+..+.+.+.+. ++++.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~g 233 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAG 233 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCC
Confidence 00000000 000011111111223355678999999999999998777666655543 47888999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHH
Q 004141 747 HGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
|.... +....+.+.+.+||.+
T Consensus 234 H~~~~-~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 234 HWVHA-EKPDAVLRAIRRYLND 254 (255)
T ss_pred Ceeec-cCHHHHHHHHHHHHhc
Confidence 97654 4455788999999875
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-15 Score=168.48 Aligned_cols=130 Identities=15% Similarity=0.123 Sum_probs=101.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|.|+ ..++.|+||++||.+.... ..........|+++||+|+++|+||.++++..+. ..+
T Consensus 4 ~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~~ 75 (550)
T TIGR00976 4 RDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LLG 75 (550)
T ss_pred CCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ecC
Confidence 47889999999997 3457899999998554321 0111224567899999999999999665543321 112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
....+|+.++++|+.++++.+ .+|+++|+|+||.+++.++..+|+.++++|..++..++.
T Consensus 76 ~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~ 135 (550)
T TIGR00976 76 SDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLY 135 (550)
T ss_pred cccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchh
Confidence 456899999999999987665 699999999999999999999999999999999887754
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=139.28 Aligned_cols=145 Identities=21% Similarity=0.372 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
+||++||++.. ...|...++.|+++||.|+.+|+|+.+.. ....++.++++++.+.. .+.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDS--------------DGADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTS--------------HHSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCcc--------------chhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997765 44678889999999999999999984332 11235555566554322 278999
Q ss_pred EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCccc
Q 004141 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 698 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 698 (771)
+++|||+||.+++.++.+. +.++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999998888310 01
Q ss_pred ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 699 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 699 ~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.+.+.|+|+++|++|..+++++.++++++++ .+.+++++++++|+
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 123455699999999999999999999998887 46899999999995
|
... |
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.4e-16 Score=155.01 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=127.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..| ..||.|+++|+||. |.+... ......+++.+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G~---G~s~~~-----~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPAL-TPDFRVLRYDKRGH---GLSDAP-----EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHh-hcccEEEEecCCCC---CCCCCC-----CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996554 33566666666 46899999999994 443211 1122455656556555554 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---hc-CCCCCcchhh---h-hccCCCCccCCCCCC--h
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---VG-TTDIPDWCYV---E-SYGSKGKDSFTESPS--V 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---~~-~~~~~~~~~~---~-~~~~~~~~~~~~~~~--~ 685 (771)
+++.++|||+||.+++.++.++|+.++++++.++....... .. .......... . .........+..... .
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 78999999999999999999999999998887764321100 00 0000000000 0 000000000000000 0
Q ss_pred hhH----------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 686 EDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 686 ~~~----------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ..+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..++.++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 000 0111112223456788999999999999999988777776654 36888999999987
Q ss_pred CCCCChHHHHHHHHHHH
Q 004141 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl 766 (771)
.... ...+.+.+.+||
T Consensus 235 ~~~~-p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CVEQ-PEAFNAALRDFL 250 (251)
T ss_pred cccC-hHHHHHHHHHHh
Confidence 6443 446666777775
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.7e-15 Score=159.29 Aligned_cols=237 Identities=14% Similarity=0.143 Sum_probs=140.3
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH---HCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la---~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
....+.+++.....|++ ....|.||++||.+.+. ..|.. .+..|+ +.+|.|+++|+|| ||.+.... .
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p~-~ 251 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKPA-D 251 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCCC-C
Confidence 34445778887777763 23347899999977553 34543 234443 4799999999999 55543210 0
Q ss_pred CCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-------h-h-cC
Q 004141 590 GKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------M-V-GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-------~-~-~~ 659 (771)
.....++..+.+ ..+++. .+.+++.++||||||.+++.++.++|++++++|+.+|...... . . ..
T Consensus 252 ---~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~~~~~~~~~ 326 (481)
T PLN03087 252 ---SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQATQYVMRKV 326 (481)
T ss_pred ---CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhHHHHHHHHh
Confidence 112355555555 244444 2457899999999999999999999999999999886432110 0 0 00
Q ss_pred CCCCcch----------hhhhccCCC----------Ccc----CCCCCChh-hHH---------------HHhhcC----
Q 004141 660 TDIPDWC----------YVESYGSKG----------KDS----FTESPSVE-DLT---------------RFHSKS---- 695 (771)
Q Consensus 660 ~~~~~~~----------~~~~~~~~~----------~~~----~~~~~~~~-~~~---------------~~~~~s---- 695 (771)
.....|. ..+...... ... ........ ... .+....
T Consensus 327 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l 406 (481)
T PLN03087 327 APRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKL 406 (481)
T ss_pred cccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhh
Confidence 0000000 000000000 000 00000000 000 000000
Q ss_pred -c-c-cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 696 -P-I-SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 696 -p-~-~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
. . ....++++|+|+++|++|..+|++.++.+.+.+.. +++++++++||.....+....+...+.+|...
T Consensus 407 ~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP~----a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 407 DGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVPR----ARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred hhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCCC----CEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 0 0 11236899999999999999999998888777754 78999999999866545556788888888753
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=141.08 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=181.1
Q ss_pred cCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 92 APFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 92 ~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
+.++...+.+...+|||+|++||.-+. .....+|+-.....+..+.... .|..+++|||||++||..+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsG-----D~TvR~WD~~TeTp~~t~KgH~-------~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSG-----DTTVRLWDLDTETPLFTCKGHK-------NWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCC-----CceEEeeccCCCCcceeecCCc-------cEEEEEEECCCcchhhccc
Confidence 345555567889999999999986432 3466777433333444443222 2558999999999999988
Q ss_pred cCCCCCCCCccCCC-CCCCCCCccCCCCCCcccccC-----CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE
Q 004141 172 EEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGDWEE-----DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV 245 (771)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~ 245 (771)
.++... .|+... .+.++.+..+..|+....|.| .-+......+++.+.+||+..+...... ......+.-+
T Consensus 177 ~dg~I~--lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCv 253 (480)
T KOG0271|consen 177 KDGSIR--LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCV 253 (480)
T ss_pred cCCeEE--EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEE
Confidence 776543 455333 345677888888887666644 4344556667899999999988766652 3444567778
Q ss_pred EEecCCCCCccEEEEEeecCccee----eeeeeeccCCce---eEEEecc-------------cc-cchh----------
Q 004141 246 VWAPLNEGLHQYLVFVGWSSETRK----LGIKYCYNRPCA---LYAVRVS-------------LY-KSEA---------- 294 (771)
Q Consensus 246 ~wspDg~~~~~~l~~~~~~~~~~~----~g~~~~~~~~~~---l~~~d~~-------------~~-~~~~---------- 294 (771)
.|- |.. ++|++..+..-| ..-..|..-.++ |=.+++. +. ++..
T Consensus 254 rwG--G~g----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 254 RWG--GEG----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred EEc--CCc----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 885 344 777764433111 000000000000 0011111 00 0000
Q ss_pred hhhhhhcC------------------CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 295 SELELKES------------------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 295 ~~~~~~~~------------------~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++.-.++. ........+++.+..-+..+.|||||++||-.+-+. .+.+|+-
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-----------SVkLW~g 396 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-----------SVKLWDG 396 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-----------ceeeeeC
Confidence 00000000 011223456777777789999999999999988775 3777777
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCc
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~ 435 (771)
.+|+.... |.| +...++.++||.|++ |+++.+.+....+|.+. +.++..=.+ ....+
T Consensus 397 ~tGk~las------------------fRG-Hv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~--tkKl~~DLpGh~DEV 454 (480)
T KOG0271|consen 397 RTGKFLAS------------------FRG-HVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVR--TKKLKQDLPGHADEV 454 (480)
T ss_pred CCcchhhh------------------hhh-ccceeEEEEeccCcc-EEEEcCCCceEEEEEee--eeeecccCCCCCceE
Confidence 77665221 222 112356889999986 77787777777777554 566554333 33455
Q ss_pred eeeEEeecCCEEE
Q 004141 436 SWSLLTLDGDNII 448 (771)
Q Consensus 436 ~~~~~s~dg~~l~ 448 (771)
....|+|||..++
T Consensus 455 f~vDwspDG~rV~ 467 (480)
T KOG0271|consen 455 FAVDWSPDGQRVA 467 (480)
T ss_pred EEEEecCCCceee
Confidence 6678999998775
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.5e-15 Score=156.51 Aligned_cols=219 Identities=15% Similarity=0.240 Sum_probs=128.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... .. .....+++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~---~~-~~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKP---PG-FSYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCC---CC-ccccHHHHHHHHHHHHHH--hcCC
Confidence 3789999997655 4467777877765 79999999999 5554221 01 112344444444333333 2346
Q ss_pred eEEEEEcChhHHHHHHHHh-hCCCceeEEEecCCccchhhhhcCCC------CC-cchh-------------hhhcc-CC
Q 004141 617 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTD------IP-DWCY-------------VESYG-SK 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~p~~~~~~~~~~~~------~~-~~~~-------------~~~~~-~~ 674 (771)
++.|+||||||.+++.++. .+|++++++|+.++............ .+ .|.+ ..... ..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRD 235 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHH
Confidence 8999999999999998886 46999999998886532110000000 00 0000 00000 00
Q ss_pred CC-----ccCCC-----------------CCC-hhhHHHHhh----cCcccccCCCCCcEEEEeeCCCCccCcHHH-HHH
Q 004141 675 GK-----DSFTE-----------------SPS-VEDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQY 726 (771)
Q Consensus 675 ~~-----~~~~~-----------------~~~-~~~~~~~~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~ 726 (771)
.. ..+.. .+. ......+.. .+....+.++++|+|+++|++|..+|++.. .++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~ 315 (360)
T PLN02679 236 NLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKY 315 (360)
T ss_pred HHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHH
Confidence 00 00000 000 000011111 111234678899999999999999998743 234
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++.+.+.-.+.++++++++||.... +...++.+.+.+||++
T Consensus 316 ~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 316 FSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHh
Confidence 4455444445899999999998664 4466888999999976
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.7e-16 Score=152.29 Aligned_cols=189 Identities=22% Similarity=0.309 Sum_probs=123.1
Q ss_pred EEEEcCCCCCCCCCc-chHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc---CCCC
Q 004141 540 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 614 (771)
Q Consensus 540 vv~~HGg~~~~~~~~-~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 614 (771)
||++|||++...... ....+..+++ .|+.|+.+|||-+++. .....++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~-----------~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEA-----------PFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTS-----------STTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeeccccccc-----------cccccccccccceeeecccccccccc
Confidence 799999998765443 3345666664 9999999999975542 3345689999999999987 3478
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCC----CceeEEEecCCccchhhhhcCCCCCcchhhhhccC-CCC---------ccCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGK---------DSFT 680 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~ 680 (771)
+++|+|+|+|.||.+++.++.... ..++++++.+|+.++... ....+........ ... ..+.
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----cccccccccccccccccccccccccccccc
Confidence 999999999999999999987432 248999999998765100 0000000000000 000 0000
Q ss_pred CCCChhhHHHHhhcCcccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 681 ESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 681 ~~~~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
. .........+|+.. ..+ -+|++|++|+.|..+ .++..|+++|++.|++++++++++..|.+.
T Consensus 146 ~----~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 146 P----GSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp S----TGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred c----cccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 0 00001123455544 123 368999999999887 688999999999999999999999999863
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=152.78 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=129.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ +|.|+++|+|| +|.+.... .....++++.+.+..+++.. +.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~i~~~--~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPG---HGFTRAPF----RFRFTLPSMAEDLSALCAAE--GL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCC---CCCCCCcc----ccCCCHHHHHHHHHHHHHHc--CC
Confidence 34889999997654 3456677777754 69999999999 45432111 11234566666666665542 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---------h---cCCCCCcchhhh-hccCCCCccCC--
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------V---GTTDIPDWCYVE-SYGSKGKDSFT-- 680 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---------~---~~~~~~~~~~~~-~~~~~~~~~~~-- 680 (771)
++++|+||||||.+++.++.++|++++++|+.++......- . ............ .........+.
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRD 174 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhc
Confidence 67899999999999999999999999988887765421100 0 000000000000 00000000000
Q ss_pred --CCCChhhH-----------------HHHhhcC---cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 681 --ESPSVEDL-----------------TRFHSKS---PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 681 --~~~~~~~~-----------------~~~~~~s---p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
........ ....... ....+.++++|+|+++|++|..+|++..+.+.+.+.. ++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~~----~~ 250 (278)
T TIGR03056 175 TGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVPT----AT 250 (278)
T ss_pred cccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhccC----Ce
Confidence 00000000 0000000 1124567889999999999999999888887766543 68
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+..++++||.+.... ..++.+.|.+|++
T Consensus 251 ~~~~~~~gH~~~~e~-p~~~~~~i~~f~~ 278 (278)
T TIGR03056 251 LHVVPGGGHLVHEEQ-ADGVVGLILQAAE 278 (278)
T ss_pred EEEECCCCCcccccC-HHHHHHHHHHHhC
Confidence 889999999876543 5578888888873
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=154.97 Aligned_cols=238 Identities=13% Similarity=0.151 Sum_probs=140.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+|..+.|+++.|.+ . +.+.||++|||+.... ...+...++.|+++||.|+++|+|| +|.+... ... .
T Consensus 9 ~~~~~l~g~~~~p~~---~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G---~G~S~~~--~~~-~ 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA---S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRG---MGDSEGE--NLG-F 78 (274)
T ss_pred cCCcEEEEEEEcCCC---C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCC--CCC-H
Confidence 457889999999863 2 2356777787654321 2234556788999999999999999 5543211 011 1
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++.++.. ..++|+++|||+||.+++.++.. +..++++|+.+|............. ...+......
T Consensus 79 ~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~-~~~~~~~~~~ 155 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRI-RHYYLGQLLS 155 (274)
T ss_pred HHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHH-HHHHHHHHhC
Confidence 1235789999999876521 23679999999999999988765 5689999999987431110000000 0000000000
Q ss_pred -CCCcc-CCCCCChh-hHHHHhh----c---C-----------cccccCCCCCcEEEEeeCCCCccCcHHH-----HHHH
Q 004141 674 -KGKDS-FTESPSVE-DLTRFHS----K---S-----------PISHISKVKTPTIFLLGAQDLRVPVSNG-----LQYA 727 (771)
Q Consensus 674 -~~~~~-~~~~~~~~-~~~~~~~----~---s-----------p~~~~~~i~~P~lii~G~~D~~vp~~~~-----~~~~ 727 (771)
..... ..+..... ....+.. . . -...+.++++|+|+++|+.|...+.... ..+.
T Consensus 156 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~~~~~~~~~~~ 235 (274)
T TIGR03100 156 ADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFADSVLGEPAWR 235 (274)
T ss_pred hHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHHHHhccChhhH
Confidence 00000 00000000 0000000 0 0 0123456789999999999987531110 2222
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.+.. ..+++..+++++|.+.......++...|.+||++
T Consensus 236 ~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 236 GALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 22321 3588999999999887777777899999999963
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-15 Score=153.35 Aligned_cols=226 Identities=17% Similarity=0.195 Sum_probs=132.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
|.+|.|+++.|+ .+++.|+||++-| ..+ ....+.. ....|+.+|++++++|.+|.+ .+....+..+ .
T Consensus 174 g~~I~g~LhlP~---~~~p~P~VIv~gG-lDs-~qeD~~~l~~~~l~~rGiA~LtvDmPG~G---~s~~~~l~~D----~ 241 (411)
T PF06500_consen 174 GKTIPGYLHLPS---GEKPYPTVIVCGG-LDS-LQEDLYRLFRDYLAPRGIAMLTVDMPGQG---ESPKWPLTQD----S 241 (411)
T ss_dssp TCEEEEEEEESS---SSS-EEEEEEE---TTS--GGGGHHHHHCCCHHCT-EEEEE--TTSG---GGTTT-S-S-----C
T ss_pred CcEEEEEEEcCC---CCCCCCEEEEeCC-cch-hHHHHHHHHHHHHHhCCCEEEEEccCCCc---ccccCCCCcC----H
Confidence 478999999998 6788898887755 322 2333333 345688999999999999944 3322111111 1
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh--hcCCCCCcchhhhhccCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~ 674 (771)
-.-..++++||...+.+|..||+++|.|+||++|..+|..++++++++|+.+|+++-... ......|. ++...+.
T Consensus 242 ~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~~~P~-my~d~LA-- 318 (411)
T PF06500_consen 242 SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQRVPD-MYLDVLA-- 318 (411)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHTTS-H-HHHHHHH--
T ss_pred HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHhcCCH-HHHHHHH--
Confidence 223457789999999999999999999999999999998888999999999887542211 01111111 1111111
Q ss_pred CCccCCCCCC--hhh-HHHHhhcCccc--cc--CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC-
Q 004141 675 GKDSFTESPS--VED-LTRFHSKSPIS--HI--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV- 746 (771)
Q Consensus 675 ~~~~~~~~~~--~~~-~~~~~~~sp~~--~~--~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~- 746 (771)
...+... .+. ...+...|-.. .+ .+.++|+|.+.|++|+++|.++.+.++. .+.+-+...++...
T Consensus 319 ---~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~----~s~~gk~~~~~~~~~ 391 (411)
T PF06500_consen 319 ---SRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAE----SSTDGKALRIPSKPL 391 (411)
T ss_dssp ---HHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHH----TBTT-EEEEE-SSSH
T ss_pred ---HHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHh----cCCCCceeecCCCcc
Confidence 1111111 111 12233444432 23 5677899999999999999988766543 23334556666544
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhh
Q 004141 747 HGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
|.-. ...+..+.+||++.|
T Consensus 392 ~~gy-----~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 392 HMGY-----PQALDEIYKWLEDKL 410 (411)
T ss_dssp HHHH-----HHHHHHHHHHHHHHH
T ss_pred ccch-----HHHHHHHHHHHHHhc
Confidence 5322 477889999999876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=140.54 Aligned_cols=241 Identities=16% Similarity=0.147 Sum_probs=147.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
++|..+...+..++ ...+.|.||.+||-.++..+......+..+.++||.|+++|.||+++.-.. .+.-+-..
T Consensus 57 pdg~~~~ldw~~~p---~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~G 129 (345)
T COG0429 57 PDGGFIDLDWSEDP---RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHSG 129 (345)
T ss_pred CCCCEEEEeeccCc---cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceeccc
Confidence 34444444444432 345669999999966665455445577788999999999999997653221 12222233
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhH-HHHHHHHhhCCC-ceeEEEecCCccchhhhhcCCCCCcc-hh-----
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-CY----- 667 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG-~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~~~~~~~~~~-~~----- 667 (771)
..+|+..+++++.++. -+.++..+|.|+|| +++.+++.+..+ .+.+++..+-..|+.......+...+ ..
T Consensus 130 ~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~l 207 (345)
T COG0429 130 ETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRYL 207 (345)
T ss_pred chhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHHH
Confidence 4699999999998864 36789999999999 555555443222 23444444433333111100000000 00
Q ss_pred --------------------------------hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 668 --------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 668 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
...+.........+. .+..+.|.+.|.+..+.+|++|+||||..+|
T Consensus 208 ~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf--~da~dYYr~aSs~~~L~~Ir~PtLii~A~DD 285 (345)
T COG0429 208 LRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGF--ADAEDYYRQASSLPLLPKIRKPTLIINAKDD 285 (345)
T ss_pred HHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCC--CcHHHHHHhccccccccccccceEEEecCCC
Confidence 000111111112222 2445678899999999999999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CC-Ch-HHHHHHHHHHHHHhh
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQ-SD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~-~~-~~~~~~i~~fl~~~L 770 (771)
++++++..-..... ....+.+...+-+||.-.. .. +. .-..+++.+||+.++
T Consensus 286 P~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~ 341 (345)
T COG0429 286 PFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFL 341 (345)
T ss_pred CCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHH
Confidence 99987654433222 4556889999999995322 11 11 134568999999876
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-15 Score=144.79 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=113.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCC---CCCCh---hhhhcCCCCc-cccchhhHH---
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGS---LGFGE---EALQSLPGKV-GSQDVNDVL--- 601 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~---~~~g~---~~~~~~~~~~-~~~~~~D~~--- 601 (771)
..+..|+||++||.+.+. ..+..... .+......++.++-+.. ...|. +|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 456789999999965542 12222222 12235677777764310 11222 4432211111 111233333
Q ss_pred ----HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 602 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ----~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+.|+...+. .++++||+|.|+|.||.+++.++.++|..++++|+.++.......
T Consensus 88 ~~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 223333333 389999999999999999999999999999999999886421100
Q ss_pred cCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
....... -++|++++||..|+++|.+.++..++.|++.+.++++..|++.||.+. .
T Consensus 146 ------------------~~~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~ 202 (216)
T PF02230_consen 146 ------------------LEDRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----P 202 (216)
T ss_dssp ------------------CHCCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------H
T ss_pred ------------------ccccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----H
Confidence 0000011 158999999999999999999999999999999999999999999885 5
Q ss_pred HHHHHHHHHHHHhh
Q 004141 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~fl~~~L 770 (771)
+.+..+.+||++++
T Consensus 203 ~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 203 EELRDLREFLEKHI 216 (216)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhC
Confidence 77889999999874
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=155.39 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=140.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---------HHHHHHHCCcEEEEECCCCCCCCChhhhhc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---------SLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---------~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~ 587 (771)
||.+|.+.+|+| +....++.|+||..|+-+.... ..... ....|+++||+||.+|.||.++++..+..
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~-~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~- 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQ-TASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP- 77 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC--HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCC-cccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc-
Confidence 689999999999 4447889999999998442210 00000 11238999999999999998777665432
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hhcCCC---C-
Q 004141 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTD---I- 662 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~~~~~---~- 662 (771)
....+.+|..++|+|+.++++. ..||+++|.|++|+.++.+|...|..++|++...+..++.. ...... .
T Consensus 78 ----~~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~ 152 (272)
T PF02129_consen 78 ----MSPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLG 152 (272)
T ss_dssp ----TSHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCC
T ss_pred ----CChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCccccc
Confidence 1566799999999999999765 47999999999999999999988889999999888777643 111000 0
Q ss_pred --Ccch----hhhhccCCCC--------------------ccCCCCC--------ChhhHHHHhhcCcccccCCCCCcEE
Q 004141 663 --PDWC----YVESYGSKGK--------------------DSFTESP--------SVEDLTRFHSKSPISHISKVKTPTI 708 (771)
Q Consensus 663 --~~~~----~~~~~~~~~~--------------------~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~l 708 (771)
..|. .......... ....... .......+.+.++...+.++++|+|
T Consensus 153 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l 232 (272)
T PF02129_consen 153 FFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVL 232 (272)
T ss_dssp HHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEE
T ss_pred chhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEE
Confidence 1120 0000000000 0000000 0001122334444455789999999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCC-CCEEEEEeCCCCcc
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKG-VETKVIVFPNDVHG 748 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~~H~ 748 (771)
++.|-.|..+. ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 233 ~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 233 IVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred EecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999997766 88899999999988 6778887765 674
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-14 Score=138.39 Aligned_cols=182 Identities=14% Similarity=0.096 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCCCCCcch--HHHHHHHH--CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYS--KSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~--~~~~~la~--~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
|.||++||.+.+. ..|. .....+.+ .+|.|+++|++| ++ +++.+.+..++++.
T Consensus 2 p~illlHGf~ss~--~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSP--RSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCc--chHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHHc--
Confidence 6799999976653 3344 23355554 379999999998 32 23445555555542
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-hhcCCCC-CcchhhhhccCCCCccCCCCCChhhHHHH
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI-PDWCYVESYGSKGKDSFTESPSVEDLTRF 691 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (771)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+... ....... .... .. ..+. .........
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~--~~~~~~~d~ 125 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPY-----TG---QQYV--LESRHIYDL 125 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccccc-----CC---CcEE--EcHHHHHHH
Confidence 34689999999999999999999883 3 467777766311 1100000 0000 00 0000 011222223
Q ss_pred hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 692 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 692 ~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
....+.. +. ..+|++++||++|+.||++.+.++++. +++++++|++|.+... .+.++.+.+|+.
T Consensus 126 ~~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~-------~~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 126 KVMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAA-------CRQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred HhcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHh-------cceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 3233322 33 667899999999999999999999884 3566789999998544 578888999875
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-14 Score=154.50 Aligned_cols=222 Identities=18% Similarity=0.233 Sum_probs=126.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-cchh-hHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 612 (771)
+..|+||++||.+.. ...|...+..|++ +|.|+++|+||. |.+.... ..... .... .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG~---G~S~~~~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLGW---GGSSRPD--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCCC---CCCCCCC--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997654 3355566777765 599999999994 4432111 01110 1111 222333333332
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc----CCC-CCcch---------------------
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTD-IPDWC--------------------- 666 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~----~~~-~~~~~--------------------- 666 (771)
.+.+++.|+||||||++++.++.++|+.++++|+.+|......... ... ...|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 2456899999999999999999999999999998887531100000 000 00000
Q ss_pred ------hhhhccCCCC-ccCCC--CC--ChhhHH-----------------HHh------hcCcc-cccCCCCCcEEEEe
Q 004141 667 ------YVESYGSKGK-DSFTE--SP--SVEDLT-----------------RFH------SKSPI-SHISKVKTPTIFLL 711 (771)
Q Consensus 667 ------~~~~~~~~~~-~~~~~--~~--~~~~~~-----------------~~~------~~sp~-~~~~~i~~P~lii~ 711 (771)
+...+..... ..... .. ...... .+. ...+. ..+.++++|+++++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 0000000000 00000 00 000000 000 11222 34678899999999
Q ss_pred eCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 712 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|++|.+.+ ....++.+.+ +.++++++++++||..... ....+.+.+.+|++.+|+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~~~E-~P~~f~~~l~~~~~~~~~ 387 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFVFLD-NPSGFHSAVLYACRKYLS 387 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCeeecc-CHHHHHHHHHHHHHHhcc
Confidence 99998664 5555544433 3357899999999976644 455888999999988763
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=150.09 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=125.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||++++.. ..+......+.+.||.|+++|+|| +|.+...... .....++++.+.+..+++. .+.
T Consensus 24 ~~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G---~G~s~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLG---CGYSDQPDDS--DELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCC---CCCCCCCCcc--cccccHHHHHHHHHHHHHH--cCC
Confidence 3578999999765531 223344445555699999999999 4443211100 0012355666666555555 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-----CCCCCc-ch-hhhhccCCC----------Ccc
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----TTDIPD-WC-YVESYGSKG----------KDS 678 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~~~~~~-~~-~~~~~~~~~----------~~~ 678 (771)
+++.++||||||.+++.++..+|++++++|+.+++........ ....+. .. ......... ...
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEV 175 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 6799999999999999999999999999998877543211100 000000 00 000000000 000
Q ss_pred C------CCCCChhhHHH------------------------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 679 F------TESPSVEDLTR------------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 679 ~------~~~~~~~~~~~------------------------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
+ ........... +........+.++++|+|+++|++|.. +++....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~-~~~~~~~~~~ 254 (288)
T TIGR01250 176 FYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDTM-TPEAAREMQE 254 (288)
T ss_pred HHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCcc-CHHHHHHHHH
Confidence 0 00000000000 000111234567899999999999984 5666666665
Q ss_pred HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 729 ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.+. .+++++++++||..... ...++.+.+.+||+
T Consensus 255 ~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 255 LIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred hcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 553 36788999999987654 45577888888873
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-14 Score=151.06 Aligned_cols=262 Identities=18% Similarity=0.187 Sum_probs=166.1
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 107 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 107 SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
||||++++|..+... ....+++.+ ..++.+++....... ..+.|||||++|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765421 223455555 444444433321122 6899999999999983
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---------------C--Cccc
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---------------S--LSVG 243 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---------------~--~~~~ 243 (771)
..+||+.++.+++.++|+ ..+ + ....
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 368999999888888885 111 0 1234
Q ss_pred eEEEecCCCCCccEEEEEeecCcc-e----------------eeeeeeec----cCCceeEEEecccccchhhhhhhhcC
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSET-R----------------KLGIKYCY----NRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~-~----------------~~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.+.|||||++ |+|....... . ..-+.|+. |....|+++++
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 1 11122211 22346888887
Q ss_pred CCCCCcceecC------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 303 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 303 ~~~~~~~~~lt------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++++...+. ........+.|++|++.|++...... .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 666554333 23445788999999997777666542 44677889999886654332111
Q ss_pred ccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEEeCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s-~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~dg~~l~~~~~~~ 454 (771)
... |-.....+.|. +++..+++.+..+|..+||.++.+++..++||.+...+ ....++.+++.|+|.+...
T Consensus 230 ---~~~----Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ---SDG----WVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ---SSS----SSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ---CCc----ceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 010 11112234444 88888999888889999999999999999999887755 4567889999999999763
Q ss_pred C-CCCeEEEEEec
Q 004141 455 V-DVPQVKYGYFV 466 (771)
Q Consensus 455 ~-~p~~l~~~~~~ 466 (771)
+ .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 33457777766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=146.49 Aligned_cols=212 Identities=15% Similarity=0.202 Sum_probs=125.1
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 616 (771)
|+||++||.+.. ...|...+..|+ .||.|+++|+||. |.+.. +......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~---G~s~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGH---GSSQS---PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCC---CCCCC---CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997655 446777888887 8999999999994 44321 111122345555554 5555554 3467
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc----CCCCCcch----------hhhhccC-CCCccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIPDWC----------YVESYGS-KGKDSFTE 681 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~----~~~~~~~~----------~~~~~~~-~~~~~~~~ 681 (771)
++.++|||+||.+++.++.++|+.++++++.++......... ......+. +...+.. ........
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 899999999999999999999999999998887543211000 00000000 0000000 00000000
Q ss_pred CCCh---------------hhHHHHh------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 682 SPSV---------------EDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 682 ~~~~---------------~~~~~~~------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
.+.. .....+. ..+....+.++++|+|+++|++|..++ +.. +.+.+...+++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~~----~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QIA----KEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HHH----HHHHhcCCCCcEE
Confidence 0000 0000000 112223456789999999999998763 222 3344444457889
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 741 VFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.++++||.+.... ...+...+.+||
T Consensus 226 ~~~~~gH~~~~e~-~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHLEN-PEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCccC-hHHHHHHHHHHh
Confidence 9999999876544 346777777776
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.4e-15 Score=148.34 Aligned_cols=207 Identities=17% Similarity=0.219 Sum_probs=124.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|+ .+|.|+++|+|| +|.+.. ....+++++ ++.+.+.. .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~s~~------~~~~~~~~~---~~~~~~~~---~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPG---HGRSRG------FGPLSLADA---AEAIAAQA---PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCc---CccCCC------CCCcCHHHH---HHHHHHhC---CC
Confidence 3779999997655 446777777775 579999999999 444321 111233444 34444332 36
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC-CC------------C-cch-hhhh------ccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DI------------P-DWC-YVES------YGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-~~------------~-~~~-~~~~------~~~~~ 675 (771)
++.++||||||.+++.++.++|++++++|+.++........... .. . .+. .... +....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999876643211000000 00 0 000 0000 00000
Q ss_pred Cc--------cCC--CCCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 676 KD--------SFT--ESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~--------~~~--~~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.. .+. ..+.... ...+...+....+.++++|+|+++|++|..+|++..+.+.+.+. ++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~ 221 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYI 221 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEE
Confidence 00 000 0000000 00111112223467899999999999999999888777766654 478899
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
++++||..... ...++.+.+.+|+
T Consensus 222 ~~~~gH~~~~e-~p~~~~~~i~~fi 245 (245)
T TIGR01738 222 FAKAAHAPFLS-HAEAFCALLVAFK 245 (245)
T ss_pred eCCCCCCcccc-CHHHHHHHHHhhC
Confidence 99999987654 4557777787774
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=145.35 Aligned_cols=229 Identities=19% Similarity=0.226 Sum_probs=133.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++...+.+ ...+.||++||++.... .......+...+|.|+++|+|| +|.+.... ......
T Consensus 13 ~~~~l~y~~~g~------~~~~~lvllHG~~~~~~---~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~~ 77 (306)
T TIGR01249 13 DNHQLYYEQSGN------PDGKPVVFLHGGPGSGT---DPGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEENT 77 (306)
T ss_pred CCcEEEEEECcC------CCCCEEEEECCCCCCCC---CHHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccCC
Confidence 466676544321 12356899999876532 2233344556789999999999 55543211 111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh----hh--cCC----------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV--GTT---------- 660 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----~~--~~~---------- 660 (771)
.+++.+.+..+.+. ++.+++.++||||||.+++.++.++|++++++|+.++...... .. +..
T Consensus 78 ~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (306)
T TIGR01249 78 TWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGASMIYPDAWQRF 155 (306)
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchhhhCHHHHHHH
Confidence 55666666666665 2456899999999999999999999999999888776432100 00 000
Q ss_pred --CCC-cc---hhhhh----ccCC------------------CCccCCCC-C----ChhhHHHHhh----------cC--
Q 004141 661 --DIP-DW---CYVES----YGSK------------------GKDSFTES-P----SVEDLTRFHS----------KS-- 695 (771)
Q Consensus 661 --~~~-~~---~~~~~----~~~~------------------~~~~~~~~-~----~~~~~~~~~~----------~s-- 695 (771)
..+ .. .+... +... ........ . .......+.. ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (306)
T TIGR01249 156 MDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENHYFVNKGFLDV 235 (306)
T ss_pred hhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHhHHHHhchhcC
Confidence 000 00 00000 0000 00000000 0 0000000000 00
Q ss_pred ---cccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 696 ---PISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 ---p~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
-...+.++ ++|+|++||++|..+|++.++++++.+.. .++++++++||.... ....+.+.+|+..+|
T Consensus 236 ~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~gH~~~~----~~~~~~i~~~~~~~~ 306 (306)
T TIGR01249 236 ENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFPE----AELKVTNNAGHSAFD----PNNLAALVHALETYL 306 (306)
T ss_pred chHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCCC----CEEEEECCCCCCCCC----hHHHHHHHHHHHHhC
Confidence 11234566 58999999999999999998888877643 688899999998752 345688888888765
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-14 Score=153.54 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=125.9
Q ss_pred CcEEEEEcCCCCCCCCCcch--HHHHHH-------HHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhHHHHH-
Q 004141 537 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 604 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~G~~Vv~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~~~~i- 604 (771)
.|.||++||++.+.. .|. .....| ...+|.|+++|+|| +|.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~~~--~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G---hG~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSGK--SFLSPTFAGELFGPGQPLDASKYFIILPDGIG---HGKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCchh--hhccchhHHHhcCCCCcccccCCEEEEeCCCC---CCCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 578999999776532 232 222222 25689999999999 5544211100 001123455655443
Q ss_pred HHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccch--------hhh-h-cCCCCCcc--------
Q 004141 605 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALM-V-GTTDIPDW-------- 665 (771)
Q Consensus 605 ~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~--------~~~-~-~~~~~~~~-------- 665 (771)
..+.+. .+.+++. |+||||||++++.++.++|++++++|+.++.... ... . .......+
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQ 221 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 334343 2345675 8999999999999999999999999988764210 000 0 00000000
Q ss_pred --h------hhhhccCCC-CccCCCCCC-------------------hhhH----HHHhhcCcccccCCCCCcEEEEeeC
Q 004141 666 --C------YVESYGSKG-KDSFTESPS-------------------VEDL----TRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 666 --~------~~~~~~~~~-~~~~~~~~~-------------------~~~~----~~~~~~sp~~~~~~i~~P~lii~G~ 713 (771)
. ....+.... .......+. .... ......+....+.+|++|+|+++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~ 301 (360)
T PRK06489 222 PPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSA 301 (360)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecC
Confidence 0 000000000 000000000 0000 0001112234567899999999999
Q ss_pred CCCccCcHHH--HHHHHHHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHHHHhh
Q 004141 714 QDLRVPVSNG--LQYARALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 714 ~D~~vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+|..+|++.+ +.+.+.+.+ .+++++|++ ||... +....+.+.+.+||++.-
T Consensus 302 ~D~~~p~~~~~~~~la~~ip~----a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~ 358 (360)
T PRK06489 302 DDERNPPETGVMEAALKRVKH----GRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVP 358 (360)
T ss_pred CCcccChhhHHHHHHHHhCcC----CeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhcc
Confidence 9999998865 566665543 689999996 99874 466688888999998753
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=146.23 Aligned_cols=210 Identities=17% Similarity=0.250 Sum_probs=124.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.. ...|...+..|. ++|.|+++|+|| +|.+.. +.. .....+++.+.+..+++. .+.+
T Consensus 34 ~~~iv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~---~~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPTW--SFLYRDIIVALR-DRFRCVAPDYLG---FGLSER---PSG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCcc--HHHHHHHHHHHh-CCcEEEEECCCC---CCCCCC---CCc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997643 335666666764 569999999999 444321 111 123467777777777766 3457
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh------hh---hcCCCCCcch-----hhhhccCCCCccCCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA------LM---VGTTDIPDWC-----YVESYGSKGKDSFTES 682 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~------~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 682 (771)
++.++||||||.++..++..+|++++++|+.++..... .+ .......... ....+... .....
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 178 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPA---GTEHR 178 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccc---cccCC
Confidence 89999999999999999999999999999877643110 00 0000000000 00000000 00000
Q ss_pred CChhhHHHHh--------------------hcCcc-cc----cC--CCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCC
Q 004141 683 PSVEDLTRFH--------------------SKSPI-SH----IS--KVKTPTIFLLGAQDLRVPVSN-GLQYARALREKG 734 (771)
Q Consensus 683 ~~~~~~~~~~--------------------~~sp~-~~----~~--~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~g 734 (771)
........+. ...+. .. +. .+++|+|+++|++|..+++.. .+.+.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip~-- 256 (286)
T PRK03204 179 PSSAVMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFPD-- 256 (286)
T ss_pred CCHHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcCC--
Confidence 0000000000 00000 00 11 127999999999999886653 4555555543
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.++++++++||..... ...++.+.+.+||
T Consensus 257 --~~~~~i~~aGH~~~~e-~Pe~~~~~i~~~~ 285 (286)
T PRK03204 257 --HVLVELPNAKHFIQED-APDRIAAAIIERF 285 (286)
T ss_pred --CeEEEcCCCccccccc-CHHHHHHHHHHhc
Confidence 6888999999987754 4557778888886
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=153.09 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=132.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~---~~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~~~~~ 593 (771)
|.++++..+-+. ...+.|+||++||+++... .+...+ ..|...+|.|+++|+|| +|.+..... ...+.
T Consensus 25 ~~~l~y~~~G~~---~~~~~~~vll~~~~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~ 96 (339)
T PRK07581 25 DARLAYKTYGTL---NAAKDNAILYPTWYSGTHQ--DNEWLIGPGRALDPEKYFIIIPNMFG---NGLSSSPSNTPAPFN 96 (339)
T ss_pred CceEEEEecCcc---CCCCCCEEEEeCCCCCCcc--cchhhccCCCccCcCceEEEEecCCC---CCCCCCCCCCCCCCC
Confidence 455554444321 1124477777777654422 232222 25556789999999999 444421110 00111
Q ss_pred -----ccch-hhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----------
Q 004141 594 -----SQDV-NDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------- 655 (771)
Q Consensus 594 -----~~~~-~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----------- 655 (771)
...+ +|+.+....+.+. ...+++ .|+||||||++++.++.++|++++++|+.++......
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~ 174 (339)
T PRK07581 97 AARFPHVTIYDNVRAQHRLLTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKA 174 (339)
T ss_pred CCCCCceeHHHHHHHHHHHHHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHH
Confidence 1112 4444433445443 234674 7999999999999999999999999998865432100
Q ss_pred -hhcCCCCC--c---------------ch---hhhhc-cCCCCcc----------------CCCCCChhhHHH----Hhh
Q 004141 656 -MVGTTDIP--D---------------WC---YVESY-GSKGKDS----------------FTESPSVEDLTR----FHS 693 (771)
Q Consensus 656 -~~~~~~~~--~---------------~~---~~~~~-~~~~~~~----------------~~~~~~~~~~~~----~~~ 693 (771)
+....... . +. +...+ ....... ............ +..
T Consensus 175 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (339)
T PRK07581 175 ALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQR 254 (339)
T ss_pred HHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhh
Confidence 00000000 0 00 00000 0000000 000000000000 000
Q ss_pred ----------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCccCCCCCChHHHHHHH
Q 004141 694 ----------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVHGIERPQSDFESFLNI 762 (771)
Q Consensus 694 ----------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H~~~~~~~~~~~~~~i 762 (771)
.+....+.++++|+|+++|++|..+|+..++.+.+.+.. .+++++++ +||.....+. .++...|
T Consensus 255 ~~~~~~~~~~~d~~~~L~~I~~PtLvI~G~~D~~~p~~~~~~l~~~ip~----a~l~~i~~~~GH~~~~~~~-~~~~~~~ 329 (339)
T PRK07581 255 GDISRNPAYGGDLAAALGSITAKTFVMPISTDLYFPPEDCEAEAALIPN----AELRPIESIWGHLAGFGQN-PADIAFI 329 (339)
T ss_pred cccccCcccCCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEeCCCCCccccccCc-HHHHHHH
Confidence 011234667899999999999999999888887776644 68889998 8997765444 4788899
Q ss_pred HHHHHHhh
Q 004141 763 GLWFKKYC 770 (771)
Q Consensus 763 ~~fl~~~L 770 (771)
.+|+++++
T Consensus 330 ~~~~~~~~ 337 (339)
T PRK07581 330 DAALKELL 337 (339)
T ss_pred HHHHHHHH
Confidence 99999876
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=150.69 Aligned_cols=245 Identities=15% Similarity=0.166 Sum_probs=140.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---------cchHHH---HHHHHCCcEEEEECCCCC--CCCCh
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS--LGFGE 582 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---------~~~~~~---~~la~~G~~Vv~~d~rG~--~~~g~ 582 (771)
+|.++++..+-+++ ....|+||++||.+.+.... .|...+ ..|...+|.|+++|+||. +..+.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 35667766665431 12347899999966543111 133332 255578999999999993 22221
Q ss_pred hhhhcC----CCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--
Q 004141 583 EALQSL----PGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-- 655 (771)
Q Consensus 583 ~~~~~~----~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-- 655 (771)
+..... ..+.....++|+.+.+..+++.- ..++ +.|+||||||.+++.++.++|++++++|+.++......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 168 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARHSAWC 168 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcCCHHH
Confidence 110000 00111345677777776666653 4467 99999999999999999999999999998887543110
Q ss_pred --hh-----cCC---C-----C-----Ccchh--hhh-----ccC-C-CCccCCCC------C--------ChhhH----
Q 004141 656 --MV-----GTT---D-----I-----PDWCY--VES-----YGS-K-GKDSFTES------P--------SVEDL---- 688 (771)
Q Consensus 656 --~~-----~~~---~-----~-----~~~~~--~~~-----~~~-~-~~~~~~~~------~--------~~~~~---- 688 (771)
+. ... . . +.+.+ ... +.. . ....+... + ..+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (351)
T TIGR01392 169 IAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESYLRYQ 248 (351)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHHHHHH
Confidence 00 000 0 0 00000 000 000 0 00000000 0 00000
Q ss_pred -----------------HHHhhcCc-------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE-eC
Q 004141 689 -----------------TRFHSKSP-------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV-FP 743 (771)
Q Consensus 689 -----------------~~~~~~sp-------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~-~~ 743 (771)
..+...+. ...+.+|++|+|+|+|++|..+|++.++.+.+.+.+....++++. ++
T Consensus 249 ~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~ 328 (351)
T TIGR01392 249 GDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIES 328 (351)
T ss_pred HHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCC
Confidence 00111111 234668899999999999999999999999999987544444444 46
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++||..... ....+.+.+.+||+
T Consensus 329 ~~GH~~~le-~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 329 PYGHDAFLV-ETDQVEELIRGFLR 351 (351)
T ss_pred CCCcchhhc-CHHHHHHHHHHHhC
Confidence 899977654 34577777887763
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-15 Score=146.52 Aligned_cols=196 Identities=20% Similarity=0.303 Sum_probs=121.0
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
||++||.+.+ ...|...+..| ++||.|+++|+|| +|.+.... .......++..+.+..+++.. ..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~~~---~~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPG---HGRSDPPP---DYSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTT---STTSSSHS---SGSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCC---cccccccc---ccCCcchhhhhhhhhhccccc--cccccc
Confidence 7999998766 35788888888 5899999999999 44433211 122334566666665555552 347899
Q ss_pred EEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-------CCCCCcch--hhhhccCCCCccCCCCCCh-----
Q 004141 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------TTDIPDWC--YVESYGSKGKDSFTESPSV----- 685 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~~~~~~~~----- 685 (771)
++|||+||.+++.++.++|++++++|+.+|......... ......+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875322110 00000000 0000000000000000000
Q ss_pred ---hhHHH-----HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 686 ---EDLTR-----FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 ---~~~~~-----~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..... .........+.++++|+++++|++|..++.+..+.+.+.+. ++++++++++||.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFLF 218 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTHH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCccH
Confidence 00000 01223335567889999999999999998666666655543 489999999999865
|
... |
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.9e-14 Score=125.35 Aligned_cols=194 Identities=18% Similarity=0.243 Sum_probs=133.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
.+|.-.++++.. .|. .....|+.|.+|--|... ........+..|.++||+++.+||||.+.+...+
T Consensus 9 i~Gp~G~le~~~-~~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------ 78 (210)
T COG2945 9 INGPAGRLEGRY-EPA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------ 78 (210)
T ss_pred ecCCcccceecc-CCC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------
Confidence 344445566544 444 356789999999744322 2223345677889999999999999977765554
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
..|.-+.+|+.++++|+.++.. +..-..+.|+|+|+++++.++.+.|+ ....+...|.++...
T Consensus 79 D~GiGE~~Da~aaldW~~~~hp-~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d--------------- 141 (210)
T COG2945 79 DNGIGELEDAAAALDWLQARHP-DSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD--------------- 141 (210)
T ss_pred cCCcchHHHHHHHHHHHHhhCC-CchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh---------------
Confidence 3455579999999999998742 22335789999999999999998765 344455555443100
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...+....+|.++++|+.|.++++......++. .+.+++.+++++|.|.
T Consensus 142 --------------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~ 190 (210)
T COG2945 142 --------------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFH 190 (210)
T ss_pred --------------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceec
Confidence 011233457999999999999887766655443 4678999999999876
Q ss_pred CCCChHHHHHHHHHHHH
Q 004141 751 RPQSDFESFLNIGLWFK 767 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~ 767 (771)
.. .....+.+.+|+.
T Consensus 191 gK--l~~l~~~i~~~l~ 205 (210)
T COG2945 191 GK--LIELRDTIADFLE 205 (210)
T ss_pred cc--HHHHHHHHHHHhh
Confidence 43 2356677888883
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-14 Score=145.51 Aligned_cols=207 Identities=20% Similarity=0.206 Sum_probs=124.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|.+ .|.|+++|+|| +|.+.. . .....+++. +.+.+. ..++
T Consensus 14 ~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~---~~l~~~---~~~~ 75 (256)
T PRK10349 14 VHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMA---EAVLQQ---APDK 75 (256)
T ss_pred CeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHH---HHHHhc---CCCC
Confidence 569999997655 4467777888865 59999999999 554421 1 112233333 334433 3478
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC-cc-------------hhhhh------ccCCCC-
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~- 676 (771)
+.++||||||.+++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 76 ~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
T PRK10349 76 AIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETAR 155 (256)
T ss_pred eEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchHH
Confidence 9999999999999999999999999999887642210000000000 00 00000 000000
Q ss_pred -------ccCCC--CCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 677 -------DSFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 677 -------~~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..... .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+.+ .++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~----~~~~~i~ 231 (256)
T PRK10349 156 QDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPH----SESYIFA 231 (256)
T ss_pred HHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCC----CeEEEeC
Confidence 00000 000000 011122233345778899999999999999998877666665543 6899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHH
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++||.... +....+...+.+|-.
T Consensus 232 ~~gH~~~~-e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 232 KAAHAPFI-SHPAEFCHLLVALKQ 254 (256)
T ss_pred CCCCCccc-cCHHHHHHHHHHHhc
Confidence 99998765 444577777777643
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=140.85 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=122.8
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
.++.+.++.|. ..+++|+||++||+... ...|...+..|+++||.|+++|++|..+. ....+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCC-----------CchhhHH
Confidence 45778899997 45778999999997654 44677788899999999999999873211 0122356
Q ss_pred hHHHHHHHHHHc--------CCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcc
Q 004141 599 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 599 D~~~~i~~l~~~--------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
+..++++|+.+. ..++.++++|+|||+||.+++.++..+++ .++++|+..|+....... .+
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~-~~----- 174 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK-QT----- 174 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-CC-----
Confidence 667777777652 22567899999999999999999988764 578888888875321100 00
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC-----ccC----cH-HHHHHHHHHHhCCC
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-----RVP----VS-NGLQYARALREKGV 735 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~-----~vp----~~-~~~~~~~~l~~~g~ 735 (771)
.+.. ....+ ..-.+.+|+|++++..|. .+| .. +..+|+++++ .
T Consensus 175 ----------------~p~i------l~~~~--~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~---~ 227 (313)
T PLN00021 175 ----------------PPPV------LTYAP--HSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECK---A 227 (313)
T ss_pred ----------------CCcc------cccCc--ccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcC---C
Confidence 0000 00011 112267999999999763 222 32 3356766654 3
Q ss_pred CEEEEEeCCCCccC
Q 004141 736 ETKVIVFPNDVHGI 749 (771)
Q Consensus 736 ~~~~~~~~~~~H~~ 749 (771)
+..+.+.++++|.-
T Consensus 228 ~~~~~~~~~~gH~~ 241 (313)
T PLN00021 228 PAVHFVAKDYGHMD 241 (313)
T ss_pred CeeeeeecCCCcce
Confidence 67888999999963
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=144.06 Aligned_cols=314 Identities=16% Similarity=0.161 Sum_probs=157.0
Q ss_pred CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceee
Q 004141 82 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 82 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.|.+.+|||..+-.+...+-..+.|.+||++|+|.++.+ +..++|.++ ..++.++||+.+.... .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~~---------~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDNT---------FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B-T---------TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCCc---------cceEE
Confidence 344667887665333223455689999999999998876 888999999 8888899998753321 26779
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc---------------CC------c---CcccCCcc
Q 004141 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE---------------ED------W---GETYAGKR 216 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~d------~---g~~~~~~~ 216 (771)
||+.+.|+|+....... ..+....+..........|++...|. .| | .+.+....
T Consensus 89 s~~~~~~~Yv~~~~~l~--~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p 166 (386)
T PF14583_consen 89 SPDDRALYYVKNGRSLR--RVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARP 166 (386)
T ss_dssp -TTSSEEEEEETTTEEE--EEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC--
T ss_pred ecCCCeEEEEECCCeEE--EEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCC
Confidence 99999999976432111 01111111111111122333222221 11 1 12223334
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+.+|+.+.+ .....-.+.+.+||.... ++.-.-+..- -.-..+||.++.
T Consensus 167 ~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~----li~fCHEGpw--------~~Vd~RiW~i~~--------- 223 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPT----LIMFCHEGPW--------DLVDQRIWTINT--------- 223 (386)
T ss_dssp -EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEE----EEEEEE-S-T--------TTSS-SEEEEET---------
T ss_pred CceEEEEECCCCceeEE--EecCccccCcccCCCCCC----EEEEeccCCc--------ceeceEEEEEEc---------
Confidence 57899999999999998 666667789999996655 4443333221 112348999998
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+++..+.+... ...+...-|+|||++|+|.+... | ....-|..+|+.+++.+.+.....
T Consensus 224 --------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~~~~~~~p~----- 284 (386)
T PF14583_consen 224 --------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGERRRLMEMPW----- 284 (386)
T ss_dssp --------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--EEEEEEE-S-----
T ss_pred --------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCceEEEeCCc-----
Confidence 66666665543 33578899999999999987754 2 224468888988876543211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeee-------------CCeeEEEEEECCCCcEEEecCCCC--------
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRITPAES-------- 433 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-------------~~~~~l~~~d~~tg~~~~l~~~~~-------- 433 (771)
...+.-++||+.++=-... .+..-||.+++.+++...|.....
T Consensus 285 ----------------~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~ 348 (386)
T PF14583_consen 285 ----------------CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGD 348 (386)
T ss_dssp ----------------EEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTB
T ss_pred ----------------eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCC
Confidence 0112235677633221111 112257888998888776654321
Q ss_pred ---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 434 ---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 434 ---~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
..-.+.|||||++|+|.+. ...++.||++.+.
T Consensus 349 ~q~~hPhp~FSPDgk~VlF~Sd-~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 349 RQVTHPHPSFSPDGKWVLFRSD-MEGPPAVYLVEIP 383 (386)
T ss_dssp SSTT----EE-TTSSEEEEEE--TTSS-EEEEEE--
T ss_pred CccCCCCCccCCCCCEEEEECC-CCCCccEEEEeCc
Confidence 2445799999999999765 4677889998865
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-14 Score=152.47 Aligned_cols=213 Identities=15% Similarity=0.207 Sum_probs=128.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|+||++||.+.+ ...|......|.+ +|.|+++|+||.+ .+.. ........++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G---~s~~-----~~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHG---ASSK-----AVGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCC---CCCC-----CCCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4466667777754 5999999999944 3311 11123466777666666655 45
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------hcCCCCCc-c--hhhhhccCC-CCc------
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------VGTTDIPD-W--CYVESYGSK-GKD------ 677 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-------~~~~~~~~-~--~~~~~~~~~-~~~------ 677 (771)
..++.|+|||+||.+++.++.++|++++++|+.+|....... +....... . .+...+... ...
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVED 275 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHH
Confidence 678999999999999999999999999999988875321100 00000000 0 000000000 000
Q ss_pred --cCCCCCC-hhhHHHH----h-----hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 678 --SFTESPS-VEDLTRF----H-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 678 --~~~~~~~-~~~~~~~----~-----~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.+..... ......+ . ..+....+.++++|+|+++|++|..+|++++..+. ..+++.+++++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~ 348 (371)
T PRK14875 276 LLKYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGA 348 (371)
T ss_pred HHHHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCC
Confidence 0000000 0000000 0 01112245678999999999999999987765432 23788899999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
||...... ...+.+.+.+||++
T Consensus 349 gH~~~~e~-p~~~~~~i~~fl~~ 370 (371)
T PRK14875 349 GHMPQMEA-AADVNRLLAEFLGK 370 (371)
T ss_pred CCChhhhC-HHHHHHHHHHHhcc
Confidence 99776443 44677777788865
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-14 Score=148.13 Aligned_cols=210 Identities=18% Similarity=0.166 Sum_probs=122.8
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-chhhHHHHHHHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|.||++||.+.+ ...|...+..|+ .+|.|+++|++|.+.+... ...+... ..+++.+.++.+ ..+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~-----~~~~~~~~~a~~l~~~i~~~------~~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKA-----LIEYDAMVWRDQVADFVKEV------VKE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHh------ccC
Confidence 568999996654 345666677775 4699999999995443221 1111111 123444444433 246
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC--------CCCCcchhhh-------------------
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--------TDIPDWCYVE------------------- 669 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~--------~~~~~~~~~~------------------- 669 (771)
++.++|||+||++++.++.++|++++++|+.++.......... ..........
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999988764321100000 0000000000
Q ss_pred -----------hccC-CCCccC--------CCCCC-hhh-HH---HHh----hcCcccccCCCCCcEEEEeeCCCCccCc
Q 004141 670 -----------SYGS-KGKDSF--------TESPS-VED-LT---RFH----SKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 670 -----------~~~~-~~~~~~--------~~~~~-~~~-~~---~~~----~~sp~~~~~~i~~P~lii~G~~D~~vp~ 720 (771)
.+.. .....+ ...+. .+. .. .+. .......+.++++|+|+++|++|.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 0000 000000 00000 000 00 000 1112234678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.+.++.+.+.+ .+++++ ++||.+... ...++.+.|.+|++
T Consensus 313 ~~~~~l~~~~p~----a~l~~i-~~GH~~~~e-~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYPD----TTLVNL-QAGHCPHDE-VPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCCC----CEEEEe-CCCCCcccc-CHHHHHHHHHHHHh
Confidence 888877766543 567777 689987644 44578889999985
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=149.34 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=143.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHH---HHHHHCCcEEEEECCCCC-CCC-C
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-G 581 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~G~~Vv~~d~rG~-~~~-g 581 (771)
|..+++..+-.. .....|+||++||.+.+.... .|..++ ..|...+|.|+++|++|. ++. +
T Consensus 32 ~~~~~y~~~G~~---~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~ 108 (379)
T PRK00175 32 PVELAYETYGTL---NADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTG 108 (379)
T ss_pred CceEEEEecccc---CCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCC
Confidence 445655554321 122358999999977654211 133332 134367899999999983 221 1
Q ss_pred hhhhhc---CC--CCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 582 EEALQS---LP--GKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~---~~--~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
.+.... .+ ..+....++++.+.+..+++.- +.++ +.++||||||.+++.++.++|++++++|+.++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 186 (379)
T PRK00175 109 PSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSARLSA 186 (379)
T ss_pred CCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCcccCH
Confidence 111000 00 0111345677777776666653 3466 58999999999999999999999999998886542110
Q ss_pred ----h-----hcCCCCCcch-------------------------------hhhhccCCCCccC--CCC---CChhhH--
Q 004141 656 ----M-----VGTTDIPDWC-------------------------------YVESYGSKGKDSF--TES---PSVEDL-- 688 (771)
Q Consensus 656 ----~-----~~~~~~~~~~-------------------------------~~~~~~~~~~~~~--~~~---~~~~~~-- 688 (771)
+ ......+.|. +...+........ ... ...+..
T Consensus 187 ~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 266 (379)
T PRK00175 187 QNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQVESYLR 266 (379)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchHHHHHH
Confidence 0 0000000000 0000100000000 000 000000
Q ss_pred -------------------HHHhhcC--------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 689 -------------------TRFHSKS--------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 689 -------------------~~~~~~s--------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
..+...+ -...+.+|++|+|+|+|+.|..+|++.++++.+.+...+..+++++
T Consensus 267 ~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~ 346 (379)
T PRK00175 267 YQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAE 346 (379)
T ss_pred HHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000011 1234578899999999999999999999999999988777778887
Q ss_pred eC-CCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 742 FP-NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 742 ~~-~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++ ++||.....+ ..++.+.+.+||++.
T Consensus 347 i~~~~GH~~~le~-p~~~~~~L~~FL~~~ 374 (379)
T PRK00175 347 IDSPYGHDAFLLD-DPRYGRLVRAFLERA 374 (379)
T ss_pred eCCCCCchhHhcC-HHHHHHHHHHHHHhh
Confidence 75 8999876544 447888999999764
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-14 Score=126.68 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=136.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+...++|++||.-...........+.+|++.||.++.+|++|.+++..++. ++ .+..+++|+...++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~G-n~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YG-NYNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cC-cccchHHHHHHHHHHhccCc---
Confidence 456789999996655444345567788999999999999999776655542 22 33456799999999986531
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhhccCCCC--ccCCCCCChhhHH
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVESYGSKGK--DSFTESPSVEDLT 689 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 689 (771)
.---+++|||-||..++.++.++++ +.-+|.+++-.+........ +...|....-+..... ..+......+...
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlm 182 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEESLM 182 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHHHH
Confidence 1223699999999999999999887 67777777777654433211 1111211111111000 1111111222222
Q ss_pred HHhhcCcccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004141 690 RFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 690 ~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
.....+......+| +||+|-+||..|.+||.+.+.+|++.+.. .++.+++|+.|++...+..
T Consensus 183 drLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHnyt~~q~~ 246 (269)
T KOG4667|consen 183 DRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHNYTGHQSQ 246 (269)
T ss_pred HHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcCccchhhh
Confidence 22222222222223 59999999999999999999999999876 6899999999999865543
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=149.00 Aligned_cols=248 Identities=17% Similarity=0.196 Sum_probs=147.5
Q ss_pred cCCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc----chHHHHHHHHCCcEEEEECCCCCCC-CChhhhhcC
Q 004141 515 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS----YSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSL 588 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~----~~~~~~~la~~G~~Vv~~d~rG~~~-~g~~~~~~~ 588 (771)
..||..|....+.+... ....+.|+|+++||...+..... ....+..|+++||.|+++|.||.+. +|.......
T Consensus 51 T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~~~~ 130 (395)
T PLN02872 51 TKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTLSEK 130 (395)
T ss_pred CCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCCCcc
Confidence 35666676666643321 12234688999999765432211 1234556889999999999999642 221111111
Q ss_pred CC---Ccc--ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhh-----
Q 004141 589 PG---KVG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL----- 655 (771)
Q Consensus 589 ~~---~~~--~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~----- 655 (771)
.. .+. .....|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+..+..
T Consensus 131 ~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~ 206 (395)
T PLN02872 131 DKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPL 206 (395)
T ss_pred chhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHH
Confidence 11 111 122469999999997652 36899999999999998555 4565 4667777777643200
Q ss_pred -----------h---hcCCCC-C-cc---------h---------hhhhccCC---------------------------
Q 004141 656 -----------M---VGTTDI-P-DW---------C---------YVESYGSK--------------------------- 674 (771)
Q Consensus 656 -----------~---~~~~~~-~-~~---------~---------~~~~~~~~--------------------------- 674 (771)
+ .+.... + .. | +....+..
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pagtS~k~~~H~ 286 (395)
T PLN02872 207 VLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPHPSSVKNLRHL 286 (395)
T ss_pred HHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCCcchHHHHHHH
Confidence 0 010000 0 00 0 00000000
Q ss_pred -------CCccCCCCCChhhHHHHhhcC-cccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 675 -------GKDSFTESPSVEDLTRFHSKS-PISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 675 -------~~~~~~~~~~~~~~~~~~~~s-p~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
..+.|.- ....+...|-+.. |...+.++ ++|+++++|++|..++++....+.+.+.. ..++..+++
T Consensus 287 ~Q~~~s~~f~~yDy-g~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~ 362 (395)
T PLN02872 287 FQMIRKGTFAHYDY-GIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLEN 362 (395)
T ss_pred HHHHhcCCcccCCC-CchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCC
Confidence 0000100 0112222333333 34457777 57999999999999999988888887754 247788999
Q ss_pred CCcc--CCCCCChHHHHHHHHHHHHHhh
Q 004141 745 DVHG--IERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~--~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+|. +...+....++..|++||++++
T Consensus 363 ~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 363 YGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 9997 4456667789999999999875
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=129.29 Aligned_cols=188 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc-CCCCccc----cchhhHHHHHHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKVGS----QDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~-~~~~~~~----~~~~D~~~~i~~l 607 (771)
.....|+||++||-+.+ ...+......+ .-.+.++.+.-+-.-..+..+... ....+.. ...+.+.++++.+
T Consensus 14 ~~p~~~~iilLHG~Ggd--e~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~ 90 (207)
T COG0400 14 GDPAAPLLILLHGLGGD--ELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEEL 90 (207)
T ss_pred CCCCCcEEEEEecCCCC--hhhhhhhhhhc-CCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 34567899999996643 33444433333 333666665533221111111110 0111111 1233455666666
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh
Q 004141 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..++.+|+.++|+|.|+.+++.++.++|+.++++++.+|..-...
T Consensus 91 ~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~-------------------------------- 138 (207)
T COG0400 91 AEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP-------------------------------- 138 (207)
T ss_pred HHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC--------------------------------
Confidence 666778999999999999999999999999999999999888642110
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
......-.+|+|++||+.|++||...+.++.+.|++.|.++++..++ .||.+. .+.++.+..|+.
T Consensus 139 ---------~~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~-----~e~~~~~~~wl~ 203 (207)
T COG0400 139 ---------ELLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIP-----PEELEAARSWLA 203 (207)
T ss_pred ---------ccccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCC-----HHHHHHHHHHHH
Confidence 00011234799999999999999999999999999999999999998 899886 567888999998
Q ss_pred Hhh
Q 004141 768 KYC 770 (771)
Q Consensus 768 ~~L 770 (771)
+.+
T Consensus 204 ~~~ 206 (207)
T COG0400 204 NTL 206 (207)
T ss_pred hcc
Confidence 765
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.2e-14 Score=147.46 Aligned_cols=236 Identities=12% Similarity=0.148 Sum_probs=140.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+..+.|.|... ....+.||++||-.... ....+...+..|+++||.|+++|++|. |.+.. .........
T Consensus 48 ~~l~~~~~~~~--~~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~---g~s~~---~~~~~d~~~ 119 (350)
T TIGR01836 48 VVLYRYTPVKD--NTHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYP---DRADR---YLTLDDYIN 119 (350)
T ss_pred EEEEEecCCCC--cCCCCcEEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCC---CHHHh---cCCHHHHHH
Confidence 44455666421 12233488889842211 112345688899999999999999983 33211 111111112
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-----------------C
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----------------T 660 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-----------------~ 660 (771)
+++.++++++.++. +.+++.++||||||.+++.++..+|+.++++|+.++.++....... .
T Consensus 120 ~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (350)
T TIGR01836 120 GYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMG 197 (350)
T ss_pred HHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcC
Confidence 45778889888773 4568999999999999999999999999999999887764321100 0
Q ss_pred CCCcchhhhhc--------------------cC-CCCccC-------CCCCC--hhhHH----HHhhcCc----------
Q 004141 661 DIPDWCYVESY--------------------GS-KGKDSF-------TESPS--VEDLT----RFHSKSP---------- 696 (771)
Q Consensus 661 ~~~~~~~~~~~--------------------~~-~~~~~~-------~~~~~--~~~~~----~~~~~sp---------- 696 (771)
.++.+.....+ .. .....+ ...+. ..... .....+.
T Consensus 198 ~~p~~~~~~~f~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~ 277 (350)
T TIGR01836 198 NIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGG 277 (350)
T ss_pred CCCHHHHHHHHHhcCcchhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECC
Confidence 01111000000 00 000000 00000 00000 0001111
Q ss_pred -ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHh
Q 004141 697 -ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 697 -~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~ 769 (771)
...+.++++|+|+++|++|.++|++.+..+++.+.. .++++++++ +||... .+....+++..+.+||.++
T Consensus 278 ~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~~ 350 (350)
T TIGR01836 278 RKVDLKNIKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQAR 350 (350)
T ss_pred EEccHHhCCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHhC
Confidence 112556889999999999999999999888887653 356778887 567533 3334578999999999763
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=132.30 Aligned_cols=193 Identities=21% Similarity=0.161 Sum_probs=119.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccch
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 597 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~-~~~~~~~~~~~ 597 (771)
.+.+|.|+.. +.++.|+||++||...+.. .+.. +.+.-.++||+|+.|+-.........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~-~~~~~PLVv~LHG~~~~a~--~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGA-PRGPVPLVVVLHGCGQSAE--DFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCC-CCCCCCEEEEeCCCCCCHH--HHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 4678999854 3347899999999766532 2221 22233468999999995432111222210 11122334456
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
..+...++++..+..+|++||++.|+|.||.++..++..+|++|+++...+++.--.. .+... . ...+..
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a----~~~~~-a-~~~m~~---- 148 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCA----ASGAS-A-LSAMRS---- 148 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccc----cCccc-H-HHHhhC----
Confidence 6777889999999889999999999999999999999999999999988877532110 00000 0 000000
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
...+...........+. ... ..|++|+||+.|..|.+..+.++.+++...
T Consensus 149 --g~~~~p~~~~~a~~~~g--~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 149 --GPRPAPAAAWGARSDAG--AYP--GYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred --CCCCChHHHHHhhhhcc--CCC--CCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 00011111111111110 111 259999999999999999999998888763
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-13 Score=132.12 Aligned_cols=220 Identities=12% Similarity=0.076 Sum_probs=131.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
++....+.++++.|. ..+++|+||++||.+.... ...+...+..|+++||.|+.+|+||. |.+........
T Consensus 6 ~~~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~---G~S~g~~~~~~- 78 (266)
T TIGR03101 6 DAPHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGC---GDSAGDFAAAR- 78 (266)
T ss_pred cCCCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCC---CCCCCccccCC-
Confidence 334455778888876 3345799999999654321 22345567889999999999999994 43321111111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC----------CC-
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------TD- 661 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~----------~~- 661 (771)
.....+|+..+++++.+.+ ..+|+|+||||||.+++.++.++|+.++++|+.+|+.....+... ..
T Consensus 79 ~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~~~~~~~~ 155 (266)
T TIGR03101 79 WDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRLVARRLGG 155 (266)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHHHHHhccc
Confidence 1123688888899987763 468999999999999999999999999999999998764322110 00
Q ss_pred CCcc---hhhhhccCCCCccCCCCCC-hhhHHHHhhcCcccccCCCCCcEEEEeeCCCC-ccCcHHHHHHHHHHHhCCCC
Q 004141 662 IPDW---CYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-RVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 662 ~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~-~vp~~~~~~~~~~l~~~g~~ 736 (771)
.... ...+.......-.+.+... .+....+...+....... ..++|++.-..+. .-.......+.+++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 234 (266)
T TIGR03101 156 ESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVPK-NCPVHWFEVRPEEGATLSPVFSRLGEQWVQSGVE 234 (266)
T ss_pred cccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCCC-CCceEEEEeccccCCCCCHHHHHHHHHHHHcCCe
Confidence 0000 0000000000000111111 111122222222111111 4567777654322 22234567889999999999
Q ss_pred EEEEEeCCC
Q 004141 737 TKVIVFPND 745 (771)
Q Consensus 737 ~~~~~~~~~ 745 (771)
++...|++-
T Consensus 235 v~~~~~~~~ 243 (266)
T TIGR03101 235 VTVDLVPGP 243 (266)
T ss_pred EeeeecCCc
Confidence 999999886
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-13 Score=134.04 Aligned_cols=222 Identities=19% Similarity=0.285 Sum_probs=134.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.+|++||-+.. ...|...+..|+. ...|.++|+.| +|.+.+.....+.. .....+.+.|+..... .+
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~-~~e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPT-TAEKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcc-cchHHHHHHHHHHHHH--cC
Confidence 455668999995443 3356667777877 79999999999 77776655443322 2234555556544443 23
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh----hcCCCCCcch-----------------hhhhccC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----VGTTDIPDWC-----------------YVESYGS 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~----~~~~~~~~~~-----------------~~~~~~~ 673 (771)
.++..|+|||+||+++..+|.+||++++.+|+.+|.--.... ......+.|. ....+|.
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 568999999999999999999999999999999986422111 0011111121 0011111
Q ss_pred CCCcc-----CCCCCC--hhhH-HHHh-----------------------hcCc-ccccCCCC--CcEEEEeeCCCCccC
Q 004141 674 KGKDS-----FTESPS--VEDL-TRFH-----------------------SKSP-ISHISKVK--TPTIFLLGAQDLRVP 719 (771)
Q Consensus 674 ~~~~~-----~~~~~~--~~~~-~~~~-----------------------~~sp-~~~~~~i~--~P~lii~G~~D~~vp 719 (771)
....+ +...+. .++. ..|. ...| +..+..++ +|+++|+|++|- +.
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dW-mD 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDW-MD 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCccc-cc
Confidence 11110 001110 0111 1110 1122 23445555 999999999985 45
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
...+.++...+.. ..++++++|++||.....+ ...+.+.++.+++..
T Consensus 318 ~~~g~~~~~~~~~--~~~~~~~v~~aGHhvylDn-p~~Fn~~v~~~~~~~ 364 (365)
T KOG4409|consen 318 KNAGLEVTKSLMK--EYVEIIIVPGAGHHVYLDN-PEFFNQIVLEECDKV 364 (365)
T ss_pred chhHHHHHHHhhc--ccceEEEecCCCceeecCC-HHHHHHHHHHHHhcc
Confidence 5666777666532 4589999999999877544 347777888877653
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.9e-14 Score=133.53 Aligned_cols=177 Identities=19% Similarity=0.146 Sum_probs=126.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCCCcchHH-------HHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKS-------LAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~-p~vv~~HGg~~~~~~~~~~~~-------~~~la~~G~~Vv~~d~rG~~~~g~~~~~ 586 (771)
...|.++.+.+|.|+++.+++++ |+|+|+||++..... ..... +...-+-+|-|++|.|--- +..+
T Consensus 168 ~~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~d-n~~~l~sg~gaiawa~pedqcfVlAPQy~~i--f~d~--- 241 (387)
T COG4099 168 ESTGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSD-NDKVLSSGIGAIAWAGPEDQCFVLAPQYNPI--FADS--- 241 (387)
T ss_pred cccCceeeEEEecccccCCCCccccEEEEEecCCCCCch-hhhhhhcCccceeeecccCceEEEccccccc--cccc---
Confidence 34578899999999999999998 999999997655322 11111 1111234467777775421 1111
Q ss_pred cCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc
Q 004141 587 SLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.+............++ -+.+++.+|.+||.++|.|+||+.++.++.++|+.|++++++++--+..
T Consensus 242 ---e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v----------- 307 (387)
T COG4099 242 ---EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRV----------- 307 (387)
T ss_pred ---ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchh-----------
Confidence 0111112334445555 5667888999999999999999999999999999999999887753210
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
..+.. -+.|+.+.|+.+|+++|.+.++-++..|+..+.++++..|.
T Consensus 308 --------------------------------~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~ 354 (387)
T COG4099 308 --------------------------------YLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFL 354 (387)
T ss_pred --------------------------------hhhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhh
Confidence 11111 24799999999999999999999999999988888777665
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=138.14 Aligned_cols=206 Identities=17% Similarity=0.180 Sum_probs=119.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..| .+|.|+++|+|| +|.+.... ....++..+.+..+++.. +.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G---~G~S~~~~------~~~~~~~~~~l~~~l~~~--~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPG---HGGSAAIS------VDGFADVSRLLSQTLQSY--NIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCC---CCCCCCcc------ccCHHHHHHHHHHHHHHc--CCC
Confidence 3779999998765 34777778777 379999999999 55442211 113445444444444442 357
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCCccchhhh----hcCCCCCcchh----------hhh-ccCCCCccCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----VGTTDIPDWCY----------VES-YGSKGKDSFT 680 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~----~~~~~~~~~~~----------~~~-~~~~~~~~~~ 680 (771)
++.++||||||.+++.++.++|+ +++++++.++....... ........|.. ... +.......+.
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLN 146 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccC
Confidence 89999999999999999999865 49998887654321100 00000000100 000 0000000000
Q ss_pred CC-----------CChhhHHHHhh-------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 681 ES-----------PSVEDLTRFHS-------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 681 ~~-----------~~~~~~~~~~~-------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
.. ........+.. .+....+.++++|+++++|++|..+. .+.+. ...++.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~-----~~~~~~~i 216 (242)
T PRK11126 147 AEQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQ-----LALPLHVI 216 (242)
T ss_pred ccHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHH-----hcCeEEEe
Confidence 00 00000001100 01123456889999999999998552 22222 14789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++||.+.. +...++.+.|..||++
T Consensus 217 ~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 217 PNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCCchhh-hChHHHHHHHHHHHhh
Confidence 999997764 4455888889999864
|
|
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=141.86 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=129.6
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|+ .+|.|+++|++| +|.+...... ......++++...+..+++. +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~-~~~~Via~DlpG---~G~S~~p~~~-~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLS-KNYHAIAFDWLG---FGFSDKPQPG-YGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCC---CCCCCCCccc-ccccCCHHHHHHHHHHHHHH--hCC
Confidence 35789999997765 346777777776 489999999999 5544321110 01123455666666555554 234
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-----hhhc-C-CC-CCcchh---hh----hc---cCC---
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-----LMVG-T-TD-IPDWCY---VE----SY---GSK--- 674 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-----~~~~-~-~~-~~~~~~---~~----~~---~~~--- 674 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|..... .... . .. ...+.. .. .+ ...
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGEIFSQDPLRASDKALTSCGPYAMK 276 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhhhhhcchHHHHhhhhcccCccCCC
Confidence 679999999999999999999999999999999864210 0000 0 00 000000 00 00 000
Q ss_pred --C----CccCCCCCC-hhhHH-HHhhc-Ccc-------c---ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 675 --G----KDSFTESPS-VEDLT-RFHSK-SPI-------S---HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 675 --~----~~~~~~~~~-~~~~~-~~~~~-sp~-------~---~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. ...+..... ..... .+... ... . ...++++|+|+++|+.|..++.+..+++.+..
T Consensus 277 ~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G~~D~~v~~~~~~~~a~~~----- 351 (383)
T PLN03084 277 EDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWGLRDRWLNYDGVEDFCKSS----- 351 (383)
T ss_pred HHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----
Confidence 0 000000000 00000 00000 000 0 01357899999999999999988777766642
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.++.++++++|.+.. +...++...|.+|+.
T Consensus 352 ~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 352 QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 3688999999997765 455688888888875
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.7e-13 Score=136.33 Aligned_cols=216 Identities=16% Similarity=0.194 Sum_probs=123.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.++. ...|......|.++||.|+++|+|| +|.+... + .....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g---~G~s~~~--~--~~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKS---AGIDQSD--A--DSVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccC---CCCCCCC--c--ccCCCHHHHHHHHHHHHHhcC-C
Confidence 446889999997665 3468888888988999999999999 4433110 1 111234554444444444321 2
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---hhhc-CCCCCcchhh-hh----ccCC-----C-----
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVG-TTDIPDWCYV-ES----YGSK-----G----- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---~~~~-~~~~~~~~~~-~~----~~~~-----~----- 675 (771)
.+++.|+||||||.++..++.++|++++++|+.++..... .... ....+.+... .. ++.. .
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 4689999999999999999999999999999887643210 0000 0000000000 00 0000 0
Q ss_pred ----Cc-cCCCCCChhhH--HHHhhcCc---c------cccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 676 ----KD-SFTESPSVEDL--TRFHSKSP---I------SHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 676 ----~~-~~~~~~~~~~~--~~~~~~sp---~------~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. .+...+..... .......+ + ....++ ++|+++|.|++|..+|++..+.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 00 01111110000 00111011 1 112344 68999999999999999988888877643 36
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
++.++ +||...... ..++...|.+..
T Consensus 242 ~~~l~-~gH~p~ls~-P~~~~~~i~~~a 267 (273)
T PLN02211 242 VYELE-SDHSPFFST-PFLLFGLLIKAA 267 (273)
T ss_pred EEEEC-CCCCccccC-HHHHHHHHHHHH
Confidence 77775 799765433 334445554443
|
|
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=131.68 Aligned_cols=243 Identities=18% Similarity=0.158 Sum_probs=151.5
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.||..+..-++.+... ......|+||++||-.+.+........+..+.++||.|+++|.||.++..-.. +.-+
T Consensus 101 ~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr~f 176 (409)
T KOG1838|consen 101 SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PRLF 176 (409)
T ss_pred CCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Ccee
Confidence 3455565556655432 12356799999999776654444455667778999999999999965542221 1122
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccch-hhhhcCCCCCcchh-
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNL-ALMVGTTDIPDWCY- 667 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~~-~~~~~~~~~~~~~~- 667 (771)
.....+|+.++++++.++. ...++..+|.||||.+.+.++++.. .+.+|+++.+|.--. ....-......+.+
T Consensus 177 ~ag~t~Dl~~~v~~i~~~~--P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~y~ 254 (409)
T KOG1838|consen 177 TAGWTEDLREVVNHIKKRY--PQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRFYN 254 (409)
T ss_pred ecCCHHHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHHHH
Confidence 2335799999999999985 3457999999999999999988643 355666666664311 00000000000000
Q ss_pred ---------------------------------hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCC
Q 004141 668 ---------------------------------VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 668 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~ 714 (771)
...+.........+.+ ...+.|.+.|+..++++|++|+|+|+..+
T Consensus 255 ~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina~D 332 (409)
T KOG1838|consen 255 RALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINAAD 332 (409)
T ss_pred HHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEecCC
Confidence 0011111111112222 23456778899999999999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC---ChHHHHHH-HHHHHHHh
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLN-IGLWFKKY 769 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~-i~~fl~~~ 769 (771)
|+++|.+ +.-.-+ ...+..+-+++-.-+||--.... +...++.. +.+||.+.
T Consensus 333 DPv~p~~-~ip~~~--~~~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 333 DPVVPEE-AIPIDD--IKSNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNA 388 (409)
T ss_pred CCCCCcc-cCCHHH--HhcCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHH
Confidence 9999875 222222 22345677888888899533222 44466666 88888754
|
|
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=138.60 Aligned_cols=215 Identities=15% Similarity=0.144 Sum_probs=107.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----------------CCCcchHHHHHHHHCCcEEEEECCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----------------SLSSYSKSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----------------~~~~~~~~~~~la~~G~~Vv~~d~r 575 (771)
.+...++..+.++++.|++. .++.|+||++||-+... ....-......|+++||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 34455678899999999853 68899999999833211 0001123567899999999999998
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|-++.+.-.... .-..+......|.+.+++||..++.+|++||+++|+||||+.++++++. .+
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaAL-Dd 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAAL-DD 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHc-ch
Confidence 844432210000 0011112224466779999999999999999999999999999999998 46
Q ss_pred ceeEEEecCCccchhh---hhcCCCCCcc-hhhhh--ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeC
Q 004141 640 KFVAAAARNPLCNLAL---MVGTTDIPDW-CYVES--YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~~---~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~ 713 (771)
++++.|+.+-++.... .....+.... .+... ....++.++. +.++...-.. ..|+|++.|.
T Consensus 249 RIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~-----D~PdIasliA--------PRPll~~nG~ 315 (390)
T PF12715_consen 249 RIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYF-----DFPDIASLIA--------PRPLLFENGG 315 (390)
T ss_dssp T--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC-------HHHHHHTTT--------TS-EEESS-B
T ss_pred hhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhC-----ccHHHHHHhC--------CCcchhhcCC
Confidence 7888776655443221 1111110000 00000 0000111111 1111111111 2589999999
Q ss_pred CCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 714 QDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 714 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.|..+|. .+.-|+.+ .+..+++++.||..
T Consensus 316 ~Dklf~i--V~~AY~~~-~~p~n~~~~~~p~~ 344 (390)
T PF12715_consen 316 KDKLFPI--VRRAYAIM-GAPDNFQIHHYPKF 344 (390)
T ss_dssp -HHHHHH--HHHHHHHT-T-GGGEEE---GGG
T ss_pred cccccHH--HHHHHHhc-CCCcceEEeecccc
Confidence 9998864 33444332 23446888888863
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=138.07 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=135.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-CcEEEEECCCCCCCCCh-hhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGE-EALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~Vv~~d~rG~~~~g~-~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..|.||++||.+.+ ...|...+..|... |+.|+++|..| +|. +... .-......+....+..+....
T Consensus 56 ~~~~pvlllHGF~~~--~~~w~~~~~~L~~~~~~~v~aiDl~G---~g~~s~~~----~~~~y~~~~~v~~i~~~~~~~- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGAS--SFSWRRVVPLLSKAKGLRVLAIDLPG---HGYSSPLP----RGPLYTLRELVELIRRFVKEV- 125 (326)
T ss_pred CCCCcEEEeccccCC--cccHhhhccccccccceEEEEEecCC---CCcCCCCC----CCCceehhHHHHHHHHHHHhh-
Confidence 467889999996654 55777777777554 69999999999 442 2111 111144566666666555443
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEE---ecCCccchhhhh--------c----CCC--------CCcchhhh
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA---ARNPLCNLALMV--------G----TTD--------IPDWCYVE 669 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v---~~~p~~~~~~~~--------~----~~~--------~~~~~~~~ 669 (771)
...++.++|||+||++++.+|+.+|+.++.++ +.++........ . ... .+.-.+.+
T Consensus 126 -~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 204 (326)
T KOG1454|consen 126 -FVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSE 204 (326)
T ss_pred -cCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeH
Confidence 23459999999999999999999999999999 554433211000 0 000 00000000
Q ss_pred hccCCCCccCCC-CCChhhH--------------H---HH----h--hcCcccccCCCC-CcEEEEeeCCCCccCcHHHH
Q 004141 670 SYGSKGKDSFTE-SPSVEDL--------------T---RF----H--SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~~~~~~~~~-~~~~~~~--------------~---~~----~--~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~ 724 (771)
.+.......+.. ....+.. . .+ . .......+.++. +|+||++|+.|+++|.+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~ 284 (326)
T KOG1454|consen 205 GLLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAE 284 (326)
T ss_pred hhhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHH
Confidence 000000000000 0000000 0 00 0 123334566776 99999999999999999777
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+.+.+ .++++++++++||.... +..+.+...|..|+.++.
T Consensus 285 ~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 285 ELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 776665 34899999999997765 667788999999998763
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=120.44 Aligned_cols=199 Identities=22% Similarity=0.362 Sum_probs=135.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-C---CCCCChhhhhcC-CCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGEEALQSL-PGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~r-G---~~~~g~~~~~~~-~~~~~~~ 595 (771)
+.+++.... .+ + .+||.+.--.+.. .+.-+..+..++..||.|++||+- | +.+-..+.+... .+.-...
T Consensus 28 ldaYv~gs~---~~-~-~~li~i~DvfG~~-~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST---SS-K-KVLIVIQDVFGFQ-FPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC---CC-C-eEEEEEEeeeccc-cHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 566666533 11 2 4555554321111 223455678889999999999964 4 121111111111 1111223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
...++...++||..++ +..+|+++|++|||-.+..+....| +|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999774 6789999999999999988888766 7888887666420
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCccCCC---
Q 004141 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHGIER--- 751 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~--- 751 (771)
. ...+..+++|+|++.++.|..+|+....++-+.|++... ..++.+|++.+|++..
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~ 215 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRA 215 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccchhhhhcc
Confidence 0 122456789999999999999999999999998887532 3578999999999863
Q ss_pred ----C---CChHHHHHHHHHHHHHhhC
Q 004141 752 ----P---QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ----~---~~~~~~~~~i~~fl~~~L~ 771 (771)
| ...++.++.++.||++||+
T Consensus 216 ~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 2 2245678899999999984
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-13 Score=129.99 Aligned_cols=174 Identities=20% Similarity=0.254 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC-----CCCcchhh-hh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-----DIPDWCYV-ES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-----~~~~~~~~-~~ 670 (771)
++-+..|++||.+++.+++++|+|+|.|.||-+|+.++..+| .++++|+.+|..-........ .++..... ..
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999988 799999988854322111000 01100000 00
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCc
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H 747 (771)
........+...........-......-.+.++++|+|++.|++|...|.. .++.+.++|+++|.+ ++++.||++||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH 161 (213)
T PF08840_consen 82 FSWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGH 161 (213)
T ss_dssp -EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S
T ss_pred ceecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCc
Confidence 000000000000000000000111122346778999999999999998854 455777888888765 78999999999
Q ss_pred cCCCC---------------------------CChHHHHHHHHHHHHHhhC
Q 004141 748 GIERP---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~---------------------------~~~~~~~~~i~~fl~~~L~ 771 (771)
.+..+ ....+.|..+++||+++|+
T Consensus 162 ~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 162 LIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp ---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred eecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76422 1357889999999999985
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=139.21 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=113.8
Q ss_pred chHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHH
Q 004141 555 YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLT 630 (771)
Q Consensus 555 ~~~~~~---~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a 630 (771)
|..++. .|...+|.|+++|+|| +|.+. ... ....+..+.+..+++.- +.++ +.|+||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G---~g~s~----~~~---~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIG---ADGSL----DVP---IDTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCC---CCCCC----CCC---CCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444554 4544579999999998 44332 111 12344444444444432 3344 5799999999999
Q ss_pred HHHHhhCCCceeEEEecCCccchhh----hhc-------CC-C--CC-c------chhhhhccC-C-CCccCCCC-----
Q 004141 631 THLIGQAPDKFVAAAARNPLCNLAL----MVG-------TT-D--IP-D------WCYVESYGS-K-GKDSFTES----- 682 (771)
Q Consensus 631 ~~~a~~~p~~~~~~v~~~p~~~~~~----~~~-------~~-~--~~-~------~~~~~~~~~-~-~~~~~~~~----- 682 (771)
+.++.++|++++++|+.++...... ... .. . .. . +.....+.. . ....+...
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 9999999999999999887532110 000 00 0 00 0 000000000 0 00000000
Q ss_pred ----CChhhH------HHHhhcCc-------------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 683 ----PSVEDL------TRFHSKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 683 ----~~~~~~------~~~~~~sp-------------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
...... ......++ ...+.++++|+|+++|++|..+|++...++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 000000 00000000 112567899999999999999999888887776632 3688
Q ss_pred EEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004141 740 IVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++++ +||.....+ ...+...+.+||++
T Consensus 310 ~~i~~~aGH~~~lE~-Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 310 RVLRSPYGHDAFLKE-TDRIDAILTTALRS 338 (343)
T ss_pred EEEeCCccHHHHhcC-HHHHHHHHHHHHHh
Confidence 89985 999877544 45888889999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=121.09 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=142.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+|+|||+.+++..... ..++.++ ..++..+.+...... ..+.|+|||+.|+....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~------- 92 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANE------- 92 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcC-------
Confidence 45689999999875543322 2344444 334333322222222 47889999997765422
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|++||+.+++.... .+....+..+.|+|||+. ++
T Consensus 93 ------------------------------------~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 93 ------------------------------------DDNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred ------------------------------------CCCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 125799999988765433 233334567899999997 77
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+.. ...++.+|. .+++...............|+|||++|++....+
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65421 113555676 4444322111222345689999999887664332
Q ss_pred CCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 340 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++... +.... ....++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI-----------PGVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc-----------cccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358899988765311 11000 000000 00123567999999876654333 357777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|+.++++..............|+++|+.|+..... -..|.+.++.++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCC
Confidence 98888876543322334556899999988755321 224777776654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=134.62 Aligned_cols=244 Identities=11% Similarity=0.084 Sum_probs=142.3
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------CCcchH-HH---HHHHHCCcEEEEECCCCCCC-----
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS----------LSSYSK-SL---AFLSSVGYSLLIVNYRGSLG----- 579 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~----------~~~~~~-~~---~~la~~G~~Vv~~d~rG~~~----- 579 (771)
.+|.+..|-.. ...+.++||++|+-.++.- ...|.. .+ ..+--..|-||++|..|++.
T Consensus 41 ~~~~Y~t~G~l---n~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~ 117 (389)
T PRK06765 41 VQMGYETYGTL---NRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPN 117 (389)
T ss_pred ceEEEEecccc---CCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCC
Confidence 34554455433 2345699999998443210 012221 11 12334569999999998642
Q ss_pred CCh---hhhhcCCC-----CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 580 FGE---EALQSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 580 ~g~---~~~~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
+|. ...+...+ ++....+.|+.+++..+++.- +-+++. ++||||||++++.++.++|++++.+|+++..
T Consensus 118 ~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~~ 195 (389)
T PRK06765 118 VITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIGN 195 (389)
T ss_pred CCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEecC
Confidence 122 11111111 233356888888888777763 346775 9999999999999999999999999887653
Q ss_pred cchhhh------h----cCCCCCcch---h---------------------------hhhccCCCCccCC---CCCChhh
Q 004141 651 CNLALM------V----GTTDIPDWC---Y---------------------------VESYGSKGKDSFT---ESPSVED 687 (771)
Q Consensus 651 ~~~~~~------~----~~~~~~~~~---~---------------------------~~~~~~~~~~~~~---~~~~~~~ 687 (771)
...... . .....+.|. | ...+......... .......
T Consensus 196 ~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~~~~~ 275 (389)
T PRK06765 196 PQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVSTLTS 275 (389)
T ss_pred CCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCccccccccccccchhh
Confidence 211000 0 000111110 0 0000100000000 0000000
Q ss_pred HHHHh------------------------hc-------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 688 LTRFH------------------------SK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 688 ~~~~~------------------------~~-------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
.+.|. .. +....+.++++|+|+|+|+.|..+|++.++++.+.+...+.+
T Consensus 276 ~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~ 355 (389)
T PRK06765 276 FEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKY 355 (389)
T ss_pred HHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCC
Confidence 01110 00 123345678999999999999999999999999998876667
Q ss_pred EEEEEeCC-CCccCCCCCChHHHHHHHHHHHHH
Q 004141 737 TKVIVFPN-DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 737 ~~~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++++ +||..... ...++...+.+||++
T Consensus 356 a~l~~I~s~~GH~~~le-~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 356 AEVYEIESINGHMAGVF-DIHLFEKKIYEFLNR 387 (389)
T ss_pred eEEEEECCCCCcchhhc-CHHHHHHHHHHHHcc
Confidence 89999986 89976644 445778888899875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=123.01 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=83.2
Q ss_pred cCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 212 YAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
+.+....++|+|+....+ +.+. +....-+.++.||||++. |+-.+. +. .|-+++-.
T Consensus 340 VSgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSF-------------Dk--SVkLW~g~- 397 (480)
T KOG0271|consen 340 VSGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASF-------------DK--SVKLWDGR- 397 (480)
T ss_pred EEecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeec-------------cc--ceeeeeCC-
Confidence 345556899999864332 3455 445556889999999998 888772 22 34444430
Q ss_pred ccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004141 290 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+.-...+..+-..+...+||.|.+.|+-.+.+ ..|.+|++.+.+..+-..+..
T Consensus 398 ---------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkD-----------sTLKvw~V~tkKl~~DLpGh~ 451 (480)
T KOG0271|consen 398 ---------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKD-----------STLKVWDVRTKKLKQDLPGHA 451 (480)
T ss_pred ---------------CcchhhhhhhccceeEEEEeccCccEEEEcCCC-----------ceEEEEEeeeeeecccCCCCC
Confidence 333455566677778899999999977765554 358888988876543222221
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
..+..+.|||||.++.
T Consensus 452 -------------------DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 452 -------------------DEVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------ceEEEEEecCCCceee
Confidence 1245678999999663
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-12 Score=155.08 Aligned_cols=224 Identities=17% Similarity=0.220 Sum_probs=132.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC-C--CccccchhhHHHHHHHHHHcCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|+||++||.+.+. ..|...+..|. .+|.|+++|+|| ||.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~-~~~rVi~~Dl~G---~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAIS-GSARCISIDLPG---HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHh-CCCEEEEEcCCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 457899999977663 46777777775 469999999999 4443221100 0 01122355555555555554
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--hh--cCCCCCcc----------hhhhhccC-CCCc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MV--GTTDIPDW----------CYVESYGS-KGKD 677 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~~--~~~~~~~~----------~~~~~~~~-~~~~ 677 (771)
++.+++.|+||||||.+++.++.++|++++++|+.++...... .. .......+ .+...+.. ....
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 1521 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWK 1521 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhh
Confidence 3457899999999999999999999999999988775422110 00 00000000 00000000 0000
Q ss_pred cCCCCC-------------ChhhHH-HHhh------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---
Q 004141 678 SFTESP-------------SVEDLT-RFHS------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--- 734 (771)
Q Consensus 678 ~~~~~~-------------~~~~~~-~~~~------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g--- 734 (771)
.....+ ...... .+.. .+....+.++++|+|+++|++|..++ +.+.++.+.+.+..
T Consensus 1522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~ 1600 (1655)
T PLN02980 1522 SLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESG 1600 (1655)
T ss_pred hhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHcccccccc
Confidence 000000 000000 0000 11123467889999999999999875 66677777665421
Q ss_pred -----CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 735 -----VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 -----~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+++++++++||.... +....+.+.+.+||++.
T Consensus 1601 ~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1601 NDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRL 1639 (1655)
T ss_pred ccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhc
Confidence 12689999999998764 44557888999999863
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-11 Score=115.84 Aligned_cols=130 Identities=22% Similarity=0.188 Sum_probs=92.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-----
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL----- 588 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~----- 588 (771)
...|...++++|.|++.+ ...|+||++||+.++.... .....-....+.||.|+.||- +...|....
T Consensus 41 ~~~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~ 113 (312)
T COG3509 41 DVNGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWF 113 (312)
T ss_pred ccCCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccC
Confidence 445778899999998743 3349999999976653211 111122233568999999952 222221111
Q ss_pred ---CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 589 ---PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ---~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
....+..++..+.+.+..|+.+..+|+.||++.|.|.||.|+..++..+|++|.++..+++..
T Consensus 114 ~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 114 GPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred CcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 112334457778888899999988999999999999999999999999999999888776654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-11 Score=121.29 Aligned_cols=309 Identities=16% Similarity=0.130 Sum_probs=150.3
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+..++||+++.|..+. .+..+++++++ ..++.+|||..+- .......+||+.+.++|+.+. ..+
T Consensus 41 ~~ft~dG~kllF~s~~------dg~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~----~~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF------DGNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNG----RSL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T------TSS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETT----TEE
T ss_pred CCcCCCCCEEEEEecc------CCCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECC----CeE
Confidence 3447899999997763 25678999777 4458899998751 123347889999999998754 368
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceee--cCCCCeEEEEecCCCCCC--CCcc---------------CCCC
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSK--PTFS---------------LGST 186 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~--~~~~---------------~~~~ 186 (771)
+.++ ...+.+.+..++.... +.-.| ..|+++++.+........ ..|. ....
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~~---------g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDWK---------GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTT--EEEEEE--TTEE---------EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCcCcEEEEEECCcccc---------cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 8888 5666666666665432 33455 567998887654332211 1110 0111
Q ss_pred CCCC--CCccCCCCCCcccccCCcCcccC-------CccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 187 KGGS--SDKDCNSWKGQGDWEEDWGETYA-------GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~~d~g~~~~-------~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.++. .......|.+...|+|.-..++. ..-...||+++.+++..+.+........++.-.|+|||+.
T Consensus 176 ~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~---- 251 (386)
T PF14583_consen 176 KTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGST---- 251 (386)
T ss_dssp TT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-----
T ss_pred CCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCE----
Confidence 1121 12234566666656553322211 1123589999999999888843333446778899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+|.+...+. ....|+.+|+ .+++.+.+..-+ ......-|+||+.+|=-..+
T Consensus 252 i~y~~~~~~~----------~~~~i~~~d~-----------------~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 252 IWYDSYTPGG----------QDFWIAGYDP-----------------DTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEEETTT------------EEEEEE-T-----------------TT--EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEeecCCC----------CceEEEeeCC-----------------CCCCceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 9998742221 1225777887 677666654333 24466678999965533332
Q ss_pred CCCCC----CCc-cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 338 SSVDS----GAH-SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 338 ~~~~~----g~~-~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
..+.. |.. ....-||++++..+....+.... ....+.. |......+.++|||||+.|+|.++..|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~-~sw~v~~--------~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD-TSWKVLD--------GDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEEE--------BT--------TBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred CCccccccccceecCCcEEEEeccccCceeeeeecc-Ccceeec--------CCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 11100 000 01124667777665543221110 0000010 0011124688999999999999999999
Q ss_pred eEEEEEECC
Q 004141 413 QVIISVNVS 421 (771)
Q Consensus 413 ~~l~~~d~~ 421 (771)
..||.+++.
T Consensus 375 ~~vY~v~i~ 383 (386)
T PF14583_consen 375 PAVYLVEIP 383 (386)
T ss_dssp -EEEEEE--
T ss_pred ccEEEEeCc
Confidence 999999874
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=141.60 Aligned_cols=233 Identities=10% Similarity=0.103 Sum_probs=122.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+-+ ...|+||++||.+.. ...|...+..| ..||.|+++|+|| +|.+.... ....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G---~G~S~~~~---~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRG---AGRSSAPK---RTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCC---CCCCCCCC---cccc
Confidence 34677887665532 235889999997655 34577777777 6789999999999 55443211 1111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecC-CccchhhhhcCCCC---------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN-PLCNLALMVGTTDI--------- 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~-p~~~~~~~~~~~~~--------- 662 (771)
...+++.+.+..+++.-.. ..++.|+||||||.+++.++.+. +..+..++..+ |..+..........
T Consensus 74 ~~~~~~a~dl~~~i~~l~~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (582)
T PRK05855 74 YTLARLADDFAAVIDAVSP-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPRRLA 152 (582)
T ss_pred cCHHHHHHHHHHHHHHhCC-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchhhhh
Confidence 2344444444444433111 23499999999999998777652 23333333322 21110000000000
Q ss_pred -------Ccchh-------------hhhccC---CCCccCCCCCCh------------hhHHHHh----hcCcccccCCC
Q 004141 663 -------PDWCY-------------VESYGS---KGKDSFTESPSV------------EDLTRFH----SKSPISHISKV 703 (771)
Q Consensus 663 -------~~~~~-------------~~~~~~---~~~~~~~~~~~~------------~~~~~~~----~~sp~~~~~~i 703 (771)
..+.. ...... .........+.. .....+. ..........+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (582)
T PRK05855 153 RALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRERYT 232 (582)
T ss_pred HHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCccCCc
Confidence 00000 000000 000000000000 0000000 00011123457
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++|+|+++|++|..+|++....+.+.+. ..++++++ +||..... ....+...+.+|+.+.
T Consensus 233 ~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~e-~p~~~~~~i~~fl~~~ 292 (582)
T PRK05855 233 DVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPMS-HPQVLAAAVAEFVDAV 292 (582)
T ss_pred cCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchhh-ChhHHHHHHHHHHHhc
Confidence 8999999999999999888777665443 25666665 68977644 3447778888898753
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-12 Score=116.45 Aligned_cols=208 Identities=17% Similarity=0.194 Sum_probs=129.6
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccc--cchhhHHHHHHHHHHcCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS--QDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~--~~~~D~~~~i~~l~~~~~~d 614 (771)
-.|+++.|.-++. ...|...+..+ ...-+.|+++|.|| ||.+-. +.+... ...+|..++++.+... +
T Consensus 43 ~~iLlipGalGs~-~tDf~pql~~l~k~l~~TivawDPpG---YG~SrP---P~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 43 NYILLIPGALGSY-KTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRP---PERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred ceeEecccccccc-cccCCHHHHhcCCCCceEEEEECCCC---CCCCCC---CcccchHHHHHHhHHHHHHHHHHh---C
Confidence 3577777854443 44666655443 33449999999999 776532 111111 1246777777766543 5
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-----hhhhcCCCCCcchh------hhhccCCCCccCCCCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----ALMVGTTDIPDWCY------VESYGSKGKDSFTESP 683 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-----~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 683 (771)
.+++.|+|+|-||..|+.+|+++++.+...|+.++..-. ..+-+..+...|.. ...|+.+.
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~-------- 184 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPET-------- 184 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHH--------
Confidence 688999999999999999999999988777766553321 12223333333421 11111100
Q ss_pred ChhhHHHHh-------hc---C-cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 684 SVEDLTRFH-------SK---S-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 684 ~~~~~~~~~-------~~---s-p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....++.+- .. + .-..+.+++||+||+||+.|+.++-.+.--+...+.- .++.++|+++|++...
T Consensus 185 f~~~wa~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~~----a~~~~~peGkHn~hLr 260 (277)
T KOG2984|consen 185 FRTQWAAWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKSL----AKVEIHPEGKHNFHLR 260 (277)
T ss_pred HHHHHHHHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhccc----ceEEEccCCCcceeee
Confidence 001111111 00 0 1134788999999999999999987775544443332 6899999999998865
Q ss_pred CChHHHHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~ 768 (771)
-. .++...+++||+.
T Consensus 261 ya-~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 261 YA-KEFNKLVLDFLKS 275 (277)
T ss_pred ch-HHHHHHHHHHHhc
Confidence 54 4788889999975
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-09 Score=113.65 Aligned_cols=204 Identities=12% Similarity=0.098 Sum_probs=117.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....|+|||+.++.....+ + .+..++ ..+............ ..+.|+|||+.|++.....
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~-~--~l~~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~----- 136 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDD-N--LVTVIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT----- 136 (300)
T ss_pred ccEEEECCCCCEEEEEcCCC-C--eEEEEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC-----
Confidence 45678999999875543222 2 344333 222222222222222 4789999999988864321
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..++++|..+++.... .........+.|+|||+. |+
T Consensus 137 --------------------------------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~ 172 (300)
T TIGR03866 137 --------------------------------------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LW 172 (300)
T ss_pred --------------------------------------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EE
Confidence 3456678777665433 222234567899999997 76
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC-------CccccceeecCCCCEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFL 331 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-------~~~~~~p~~SpDG~~l 331 (771)
+.+. ....|+++|+ .+++. ..++.. ........|||||+.+
T Consensus 173 ~~~~--------------~~~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~ 221 (300)
T TIGR03866 173 VSSE--------------IGGTVSVIDV-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTA 221 (300)
T ss_pred EEcC--------------CCCEEEEEEc-----------------CcceeeeeeeecccccccccCCccceEECCCCCEE
Confidence 6541 2236888887 44433 333211 1123457899999986
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..... ...|.++|+.+++.... ... . ..+..++|+|||++|+......
T Consensus 222 ~~~~~~----------~~~i~v~d~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~l~~~~~~~- 270 (300)
T TIGR03866 222 FVALGP----------ANRVAVVDAKTYEVLDY----------LLV---G-------QRVWQLAFTPDEKYLLTTNGVS- 270 (300)
T ss_pred EEEcCC----------CCeEEEEECCCCcEEEE----------EEe---C-------CCcceEEECCCCCEEEEEcCCC-
Confidence 544322 23588999876543211 000 0 1234678999999876554333
Q ss_pred eeEEEEEECCCCcE-EEec
Q 004141 412 SQVIISVNVSSGEL-LRIT 429 (771)
Q Consensus 412 ~~~l~~~d~~tg~~-~~l~ 429 (771)
..|..+|+.+++. .++.
T Consensus 271 -~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 271 -NDVSVIDVAALKVIKSIK 288 (300)
T ss_pred -CeEEEEECCCCcEEEEEE
Confidence 3577778888885 4444
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.8e-10 Score=122.67 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=121.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
|.+...++|.|+++. .+++|+|+++||..+... ......+..|.+.| .+|+++|......... ....
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~-~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~----el~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAES-MPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQ----ELPC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhc-CCHHHHHHHHHHcCCCCceEEEEECCCCcccccc----cCCc---
Confidence 566888999998775 568999999999765432 12334556666777 4567887532111100 0110
Q ss_pred ccch-hhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 594 SQDV-NDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 594 ~~~~-~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.... ..+. +.+-++.++.. .|+++.+|+|+||||+.|++++.++|++|.++++.+|.+-+...
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~~------------- 328 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPHR------------- 328 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCCc-------------
Confidence 0111 1121 23344444433 47889999999999999999999999999999999986421100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
... ... .....+... ....-...++|-+|+.|..+ .+..+++++.|+++|.++++.+++| ||..
T Consensus 329 -~~~--------~~~-~l~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GHd~ 392 (411)
T PRK10439 329 -GGQ--------QEG-VLLEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GHDA 392 (411)
T ss_pred -cCC--------chh-HHHHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-CcCH
Confidence 000 000 001111110 01112245888899998654 4678899999999999999999987 6954
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-10 Score=112.85 Aligned_cols=294 Identities=15% Similarity=0.111 Sum_probs=173.3
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004141 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
+|.+++++++. +.++.+ ..++...|+-.. +++....++-|++.++...+.+ + .+-+.+
T Consensus 331 ~Gd~ia~VSRG----------kaFi~~--~~~~~~iqv~~~------~~VrY~r~~~~~e~~vigt~dg-D--~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSRG----------KAFIMR--PWDGYSIQVGKK------GGVRYRRIQVDPEGDVIGTNDG-D--KLGIYDK 389 (668)
T ss_pred CCcEEEEEecC----------cEEEEC--CCCCeeEEcCCC------CceEEEEEccCCcceEEeccCC-c--eEEEEec
Confidence 78888887653 223321 222233444222 4577777888888655433222 2 233344
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004141 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++..--..+ ..+..|||||+++...
T Consensus 390 ~~~e~kr~e~~lg~I----------~av~vs~dGK~~vvaN--------------------------------------- 420 (668)
T COG4946 390 DGGEVKRIEKDLGNI----------EAVKVSPDGKKVVVAN--------------------------------------- 420 (668)
T ss_pred CCceEEEeeCCccce----------EEEEEcCCCcEEEEEc---------------------------------------
Confidence 344444443322222 5889999999888742
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004141 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
.+.+||++|+++|+++.+. -....-+..+.|||++++ |+|.-- .|+ -..+|.++|+
T Consensus 421 -----dr~el~vididngnv~~id-kS~~~lItdf~~~~nsr~----iAYafP------~gy-----~tq~Iklydm--- 476 (668)
T COG4946 421 -----DRFELWVIDIDNGNVRLID-KSEYGLITDFDWHPNSRW----IAYAFP------EGY-----YTQSIKLYDM--- 476 (668)
T ss_pred -----CceEEEEEEecCCCeeEec-ccccceeEEEEEcCCcee----EEEecC------cce-----eeeeEEEEec---
Confidence 3478999999999999984 333446789999999999 999742 222 1237888887
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc----------ccceeeecCCCC
Q 004141 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT----------DSLHRIDWPTNG 360 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~----------~~l~~~d~~~~~ 360 (771)
++++.-.+|.......+|+|.|||++|+|++.+.- .+.... .+=|++-+..|-
T Consensus 477 --------------~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsL---dPs~Drv~fnf~f~~vskPylv~L~~g~ 539 (668)
T COG4946 477 --------------DGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSL---DPSNDRVIFNFSFQRVSKPYLVVLGRGY 539 (668)
T ss_pred --------------CCCeEEEecCCcccccCcccCCCCcEEEEEecccc---CCCCCeeEEEEEEeeeccceEEEecCCC
Confidence 88899999999999999999999999999998752 111111 112233333221
Q ss_pred CCC---C----cc--ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEEC
Q 004141 361 NFS---S----LE--KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNV 420 (771)
Q Consensus 361 ~~~---~----~~--~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~d~ 420 (771)
..+ . +. +..++..+-. ....||-. .....+..-..+|+.++|+..-++ ...|-.+|+
T Consensus 540 ~sP~~q~p~~~~~ea~e~dle~ie~--r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydl 616 (668)
T COG4946 540 YSPFNQPPDEANSEAGEVDLEGIED--RVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDL 616 (668)
T ss_pred CChhhcCchhcCccccceehhhhcc--cccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEec
Confidence 110 0 00 0000000000 01112200 001123445678888888775332 335777788
Q ss_pred CCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 421 SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 421 ~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
++.+++.+..+. +...+|+|++.+++-- --.|++++.+.
T Consensus 617 etkk~~e~k~nv---ss~rlS~D~s~ilvk~-----d~kl~~f~vek 655 (668)
T COG4946 617 ETKKVEEYKDNV---SSFRLSSDGSKILVKL-----DGKLRLFDVEK 655 (668)
T ss_pred chhhHHHHhccc---ceEEEcCCCCEEEEEe-----CCeEEEEeccc
Confidence 888777776553 3456899999998832 24577777643
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-10 Score=106.05 Aligned_cols=250 Identities=15% Similarity=0.152 Sum_probs=159.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+....++||++.||..... .-.+|.+..+. .+...++.. .++ ..+.|--||++++..+++...
T Consensus 41 sqVNrLeiTpdk~~LAaa~~q---hvRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQ---HVRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCC---eeEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 558889999999999875432 23455555332 344444443 344 588899999999999888866
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC-CCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK-SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~-~~~~~~~~wspDg~~~ 254 (771)
+ .|+..... -.+..........++..|+-+|++++.....|++||+..... ..+ +|+ +..+.+++..|||+.
T Consensus 108 k--IWdlR~~~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 K--IWDLRSLS-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred E--EEeccCcc-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5 45433222 222333446667788888989999999999999999987743 334 444 457889999999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
++-+. ..+..|++++-.. +..+.-....++..+.+.+....+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~----------~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNH----------QTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCC----------CccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 77654 2336777776210 0000001123344567788999999999999998
Q ss_pred ecCCCCCCCCccccccceeeecCCC-CC-CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTN-GN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~-~~-~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
+.+. .+++|+.++- +. +.++... ...-...||.||.+|+ +.+.++.
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Ylv-Tassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYLV-TASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEEE-ecCCCCc
Confidence 8775 3566665442 10 1111110 0123567899999775 5555577
Q ss_pred eEEEEEECCCCcEEEec
Q 004141 413 QVIISVNVSSGELLRIT 429 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~ 429 (771)
.+|| ++..++..+..
T Consensus 282 ~rlW--~~~~~k~v~qy 296 (311)
T KOG0315|consen 282 ARLW--DLSAGKEVRQY 296 (311)
T ss_pred eeec--ccccCceeeec
Confidence 7787 45566655443
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=128.83 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=125.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++-+.|.|.. .....+.||++||.....+... -...+.+|+++||.|+++|+||.+ .+.. .........
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg---~s~~---~~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD---ASQA---DKTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC---cccc---cCChhhhHH
Confidence 5556777753 2224466888999544332211 235788999999999999999843 3211 111222334
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHH----HHHhhC-CCceeEEEecCCccchhhhhc--------------
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNLALMVG-------------- 658 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~----~~a~~~-p~~~~~~v~~~p~~~~~~~~~-------------- 658 (771)
+++.++++.+.+. .+.+++.++|||+||.+++ .+++.+ +++++++++.+..+++.....
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df~~~G~l~~f~~~~~~~~~e 323 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDFSDPGELGVFVDEEIVAGIE 323 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCCCCcchhhhhcCchhHHHHH
Confidence 5688888888765 3567899999999999863 234454 778998888877666431100
Q ss_pred -----CCCCCcchhhhhccC---C------CCc-cCCCC-----------------CC---hhhHHHHhhcCcc------
Q 004141 659 -----TTDIPDWCYVESYGS---K------GKD-SFTES-----------------PS---VEDLTRFHSKSPI------ 697 (771)
Q Consensus 659 -----~~~~~~~~~~~~~~~---~------~~~-~~~~~-----------------~~---~~~~~~~~~~sp~------ 697 (771)
...++.+.+...+.. . ... ...+. |. .+....+...+.+
T Consensus 324 ~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~~~~lr~ly~~N~L~~G~~~ 403 (532)
T TIGR01838 324 RQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMHNFYLRNLYLQNALTTGGLE 403 (532)
T ss_pred HHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHHHHHHHHHHhcCCCcCCeeE
Confidence 000010000000000 0 000 00000 00 0001111222222
Q ss_pred -----cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 698 -----SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 698 -----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
..+.+|++|+|+++|++|.++|++.+..+.+.+.. .+..+++++||...
T Consensus 404 v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~~----~~~~vL~~sGHi~~ 457 (532)
T TIGR01838 404 VCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLGG----PKTFVLGESGHIAG 457 (532)
T ss_pred ECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCCC----CEEEEECCCCCchH
Confidence 24677899999999999999999988887766542 45668889999643
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-11 Score=124.99 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=101.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--c-chHHH---HHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--S-YSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~-~~~~~---~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
.||.+|...+|+|+ ..++.|+++..+-.|...... . ..... ..++.+||+|+..|.||++++...+.
T Consensus 27 RDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~---- 99 (563)
T COG2936 27 RDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFD---- 99 (563)
T ss_pred cCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccc----
Confidence 47899999999998 568899999988444433211 1 11112 36899999999999999877655432
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~ 653 (771)
.+...+.+|-.+.|+||.++++.+ .+|+++|.|++|+..+++|+..|...|+++..++..+.
T Consensus 100 -~~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 100 -PESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred -eeccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 122247899999999999998765 68999999999999999999999999999988887764
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-11 Score=108.43 Aligned_cols=180 Identities=15% Similarity=0.143 Sum_probs=131.3
Q ss_pred CCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
...|+.||+|||.+...... ....+..+..+||+|..++|--++. .....+.+.++...++|+.+.. -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHhc-c
Confidence 45699999999988654332 2235566779999999999876432 1233455889999999998864 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+.+++.+-|||.|+.+++.+.++ +..++.++++.++++++..+.+.....+.. .. .+...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlg---------------Lt----~~~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLG---------------LT----ERNAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccC---------------cc----cchhh
Confidence 45678999999999999988764 456899999999999887765544321111 00 01112
Q ss_pred hcCc-ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 693 SKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 693 ~~sp-~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..|+ +.....++.|+|++.|++|.---++|.+.|..++++ ..+..|++.+|.
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~hy 247 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYDHY 247 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcchh
Confidence 2233 234677889999999999988778999999999987 678899999995
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-09 Score=112.98 Aligned_cols=269 Identities=14% Similarity=0.210 Sum_probs=145.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+++++. .|+..... .....+..+.+..+.+....+...+ ......-..+++|||++|+ +.+..++.-.++.+
T Consensus 45 ~~~~~~-LY~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~-vany~~g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRR-LYVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLY-VANYGGGSVSVFPL 116 (345)
T ss_dssp -TTSSE-EEEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEE-EEETTTTEEEEEEE
T ss_pred EeCCCE-EEEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEE-EEEccCCeEEEEEc
Confidence 456654 44444321 1345666666755533333332221 1113345788999999985 55554465566667
Q ss_pred ecCCcceEEEecC----CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 130 WSQSQLEKEFHVP----QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
...+......... .+.....-......++.|+|||++|+.. +.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 6556555443210 0000000000011378999999988543 32
Q ss_pred CCcCcccCCccCceEEEEEccCCc--eeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 206 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
+...|++++++... +.... ..+....+.+++|+|||+. +|+.++. ...
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~-------------s~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNEL-------------SNT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETT-------------TTE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCC-------------CCc
Confidence 23567777776544 43310 1455567889999999994 5555332 235
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceec---C---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNL---T---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---t---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
|..++++. ..+..+.+ . . ........++||||++| |++++. ...|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 66666521 12222111 1 1 11145678999999976 566663 34566
Q ss_pred eeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 353 RIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 353 ~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+++++ ++..+. +..+.. .+.+ +..+.++|||++|+++....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~~--------~~~~~~--~G~~-------Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLTL--------VQTVPT--GGKF-------PRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEEE--------EEEEEE--SSSS-------EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceEE--------EEEEeC--CCCC-------ccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 77663 333221 111111 1222 356788999999988777778889999999999988765
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.7e-10 Score=110.87 Aligned_cols=276 Identities=12% Similarity=0.066 Sum_probs=162.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+||++|++||-.+.. ....+|.+..++..+-.-.+ .+.+..| ..+.||||.++|+--..+.. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~~kl~~tl-vgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVHFKLKKTL-VGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcceeeeeee-ecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 568899999999999976543 34456666655542211111 1111112 58999999999876443332 2
Q ss_pred CCccCCCCCCCCCCccC-CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
..|+...+......... ........|.||.-..++|..+.+++.||+++.....-.+. ..-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gv-r~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGV-RDPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccccc-ccceeEEEEEcCCCcE----
Confidence 23443333222222221 12223567899977777888889999999998754333211 1124678899999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++.+. .+.+|..++. ++...+.+-.....+.+...|.||+.+...-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 88776 2337888886 55555546556667889999999996544332
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
+..|++||++.....+.-.+... ..| +-.-||.--...++.+.+.++ .+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq----------~~f-------iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQ----------GHF-------IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccc----------cce-------EEEeccCCCCcceEEecCCCc--eEEE
Confidence 24589999884332211111100 001 113345433334656655554 4677
Q ss_pred EECCCCcEEEecCC-CCCceeeEEeecCCEEEEEEe
Q 004141 418 VNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 418 ~d~~tg~~~~l~~~-~~~~~~~~~s~dg~~l~~~~~ 452 (771)
++..+|++.....+ ...+...+++|....++++++
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 78888887655443 334555566665555555443
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-11 Score=125.67 Aligned_cols=204 Identities=18% Similarity=0.188 Sum_probs=119.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhh------
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ------ 586 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg-~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~------ 586 (771)
|.+...++|.|+++...+++|+|+++||. .+.. .......+..+.+.| ..+++++..+.......+..
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~-~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~ 83 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFR-NGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSR 83 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHTTHHHH-HHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTC
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCCccccc-cchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccccc
Confidence 56688899999988788999999999994 1110 001112333344443 45566665443311111110
Q ss_pred cCCCCccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-hhhcCCCCC
Q 004141 587 SLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIP 663 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-~~~~~~~~~ 663 (771)
......+.....+.+ +.+.++.++..+.+++.+|+|+||||+.|+.++.++|+.|.++++.+|.++.. .+.+..+.
T Consensus 84 ~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~~~~- 162 (251)
T PF00756_consen 84 RADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGPSDD- 162 (251)
T ss_dssp BCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHHSTC-
T ss_pred ccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCcCCc-
Confidence 001111111222322 44566667766666669999999999999999999999999999999987653 11110000
Q ss_pred cchhhhhccCCCCccCCCCCChhhHHHHhhcCccc-----ccCCCCCcEEEEeeCCCCccC----------cHHHHHHHH
Q 004141 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVP----------VSNGLQYAR 728 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-----~~~~i~~P~lii~G~~D~~vp----------~~~~~~~~~ 728 (771)
..+...++.. ....-..++++..|+.|.... .....++.+
T Consensus 163 -------------------------~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~ 217 (251)
T PF00756_consen 163 -------------------------EAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQ 217 (251)
T ss_dssp -------------------------GHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHH
Confidence 0011111111 112234678999999998432 123344555
Q ss_pred HHHhCCCCEEEEEeCCCCccC
Q 004141 729 ALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.|+..|++..+..++ ++|..
T Consensus 218 ~l~~~g~~~~~~~~~-G~H~~ 237 (251)
T PF00756_consen 218 LLKAKGIPHTYHVFP-GGHDW 237 (251)
T ss_dssp HCCCEECTTESEEEH-SESSH
T ss_pred HHHHcCCCceEEEec-Cccch
Confidence 556667788888887 46743
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-08 Score=105.81 Aligned_cols=257 Identities=14% Similarity=0.045 Sum_probs=133.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++||||+.|+...... +.-.+|.++.++....+-...... ....+.|+|||+.|+....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~~~g~~l~v~~~------- 99 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPG--------SPTHISTDHQGRFLFSASY------- 99 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCC--------CceEEEECCCCCEEEEEEc-------
Confidence 456678999999886544322 333335554333332222111110 1147899999997766432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-Ccee-eccCCCCCCccceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~-~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+++++. +... .+...+.........++|||+.
T Consensus 100 ------------------------------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~---- 139 (330)
T PRK11028 100 ------------------------------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT---- 139 (330)
T ss_pred ------------------------------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE----
Confidence 125777888753 2221 1110222234556789999986
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCCCccccceeecCCCCE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+... . ....|+++|+. ..+... ++. ........+|+|||++
T Consensus 140 l~v~~-~-------------~~~~v~v~d~~----------------~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 140 LWVPC-L-------------KEDRIRLFTLS----------------DDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred EEEee-C-------------CCCEEEEEEEC----------------CCCcccccCCCceecC-CCCCCceEEECCCCCE
Confidence 55443 2 22378888872 222221 111 1223567899999997
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+... .. ...|.+++++.+... + ..+..+...+ ..+++- .....+.++|||++||.+....
T Consensus 189 lyv~~-~~---------~~~v~v~~~~~~~~~-~----~~~~~~~~~p--~~~~~~--~~~~~i~~~pdg~~lyv~~~~~ 249 (330)
T PRK11028 189 AYCVN-EL---------NSSVDVWQLKDPHGE-I----ECVQTLDMMP--ADFSDT--RWAADIHITPDGRHLYACDRTA 249 (330)
T ss_pred EEEEe-cC---------CCEEEEEEEeCCCCC-E----EEEEEEecCC--CcCCCC--ccceeEEECCCCCEEEEecCCC
Confidence 75543 32 256888887632110 1 0011111111 111110 0112466899999887764445
Q ss_pred CeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 411 SSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
+...+|.++.+++..+.+.. .........+++||++|+.+.... ..+.++++
T Consensus 250 ~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~---~~v~v~~~ 303 (330)
T PRK11028 250 SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS---HHISVYEI 303 (330)
T ss_pred CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC---CcEEEEEE
Confidence 56667777665554433221 111223467899999998865432 24555444
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.6e-10 Score=103.77 Aligned_cols=182 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+++||...+..+.......+++++.+. .+..++++- ..++..+.+..+++.. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 8999997665444444455667777664 455555543 1345555566666552 3445
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
+.|+|.|+||+.|.+++.+++ +++ |+++|.+....... ...+... ..+......-....+.....+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~----------~~iG~~~-~~~~~e~~~~~~~~~~~l~~l 126 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQ----------DYIGEQT-NPYTGESYELTEEHIEELKAL 126 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHH----------HhhCccc-cCCCCccceechHhhhhcceE
Confidence 999999999999999998874 444 88899876543221 0111100 000000000000111111111
Q ss_pred ccc-CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 698 SHI-SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 698 ~~~-~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
... ..-..++++++++.|++++...+...++. +..++.+|++|.+.. -.+.+..|++|+
T Consensus 127 ~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 127 EVPYPTNPERYLVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred eccccCCCccEEEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 111 12246899999999999998665554432 344466788998874 346677888886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-09 Score=112.20 Aligned_cols=273 Identities=14% Similarity=0.059 Sum_probs=159.0
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++||||+++||....++ +...+++++ ..|+. +.+. .... +..+.|++||+.++|...+...+.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~--l~d~i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF--LPDGIENPK---------FSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE--EEEEEEEEE---------SEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC--cCCcccccc---------cceEEEeCCCCEEEEEEeCccccc
Confidence 35789999999999876653 345566666 44432 2221 1111 124899999999999876553210
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--ec-cCCCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l-~~~~~~~~~~~~~wspDg~~~~ 255 (771)
. .......||.+.+.++... .+ .........-.+.+|+||+.
T Consensus 196 ~---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~-- 240 (414)
T PF02897_consen 196 S---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY-- 240 (414)
T ss_dssp ----------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE--
T ss_pred c---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE--
Confidence 0 0112468999999887543 33 11111221446789999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+..... .+.+|++++.... ......+.|........... ...|..+++.+
T Consensus 241 --l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~v-~~~~~~~yi~T 294 (414)
T PF02897_consen 241 --LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYYV-DHHGDRLYILT 294 (414)
T ss_dssp --EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEEE-EEETTEEEEEE
T ss_pred --EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEEE-EccCCEEEEee
Confidence 7766533221 2589999983100 00135566655433332222 12277788888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
+.. ....+|+.+++....... ... ++....++ ..-..++..+++|++....++...|
T Consensus 295 n~~-------a~~~~l~~~~l~~~~~~~----~~~---~l~~~~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l 351 (414)
T PF02897_consen 295 NDD-------APNGRLVAVDLADPSPAE----WWT---VLIPEDED---------VSLEDVSLFKDYLVLSYRENGSSRL 351 (414)
T ss_dssp -TT--------TT-EEEEEETTSTSGGG----EEE---EEE--SSS---------EEEEEEEEETTEEEEEEEETTEEEE
T ss_pred CCC-------CCCcEEEEeccccccccc----cee---EEcCCCCc---------eeEEEEEEECCEEEEEEEECCccEE
Confidence 865 335689999987755310 000 01000000 0011245567789999889999999
Q ss_pred EEEECC-CCcEEEecCCCC-CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 416 ISVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d~~-tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
..+++. +.....+..... .+.......+++.+++..+++.+|+.+|.+++.+++
T Consensus 352 ~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 999998 666666654433 223333456889999999999999999999987764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-09 Score=109.60 Aligned_cols=256 Identities=9% Similarity=0.075 Sum_probs=135.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... .. ...+..++++ +.+....+...+.+ +.....+++|||++|+..... ++.-.+|.
T Consensus 42 ~spd~~~lyv~~-~~-------~~~i~~~~~~-~~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~-~~~v~v~~ 108 (330)
T PRK11028 42 ISPDKRHLYVGV-RP-------EFRVLSYRIA-DDGALTFAAESPLP---GSPTHISTDHQGRFLFSASYN-ANCVSVSP 108 (330)
T ss_pred ECCCCCEEEEEE-CC-------CCcEEEEEEC-CCCceEEeeeecCC---CCceEEEECCCCCEEEEEEcC-CCeEEEEE
Confidence 467887765432 21 2355555564 22222212111111 235678999999988655432 23333444
Q ss_pred EecCCcceEEEec---CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 129 LWSQSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+..++........ .... .+..++|||++|+....
T Consensus 109 ~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~--------------------------------- 145 (330)
T PRK11028 109 LDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL--------------------------------- 145 (330)
T ss_pred ECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC---------------------------------
Confidence 4323322222211 1222 36789999988765422
Q ss_pred CCcCcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 206 EDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
....|++||+++ +.+.... ..+....+..++|+|||+. + |++++. ..
T Consensus 146 ----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~----l-yv~~~~-------------~~ 197 (330)
T PRK11028 146 ----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY----A-YCVNEL-------------NS 197 (330)
T ss_pred ----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE----E-EEEecC-------------CC
Confidence 236899999876 3332110 0122335678899999995 4 444332 23
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCccee---cC---C---CCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVN---LT---E---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt---~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
.|..++++. .+++.+. +. . .........++|||++|+. +++. ...|
T Consensus 198 ~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~I 252 (330)
T PRK11028 198 SVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASLI 252 (330)
T ss_pred EEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCeE
Confidence 677776621 1222211 11 1 0111224678999997654 5442 2457
Q ss_pred eeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 352 HRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 352 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+++++..+... .++..... +. ....+.++|||++|+.+....+...+|.++..+|.++.+.
T Consensus 253 ~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 253 SVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred EEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 777765433211 01111111 00 2346789999999988766567788999988888876653
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-10 Score=109.40 Aligned_cols=177 Identities=19% Similarity=0.177 Sum_probs=118.9
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|. ..+.+|+|||+||..-. ...|....+.+++.||+|+.+|+....+ .....+++++.+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~~~--~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFLLI--NSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcCCC--HHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3577887 56789999999996522 3347888999999999999999654221 122335788888
Q ss_pred HHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 603 AIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 603 ~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.++|+.+.- ..|-+|++|+|||.||-++..++..+ +.++++++++.|+-.+.......
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~~--------- 140 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQTE--------- 140 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCCC---------
Confidence 899987631 15788999999999999999998876 45899999999985322110000
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC---------ccCc-HHHHHHHHHHHhCCCCEEE
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL---------RVPV-SNGLQYARALREKGVETKV 739 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~---------~vp~-~~~~~~~~~l~~~g~~~~~ 739 (771)
|. .....|. .-+...|+|++-.+-.. ..|. ..-.+||++++ .+.-.
T Consensus 141 -------------P~------v~~~~p~--s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~---~p~~~ 196 (259)
T PF12740_consen 141 -------------PP------VLTYTPQ--SFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECK---PPSWH 196 (259)
T ss_pred -------------Cc------cccCccc--ccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcC---CCEEE
Confidence 00 0000111 11244899998766663 2222 23456777664 35677
Q ss_pred EEeCCCCcc
Q 004141 740 IVFPNDVHG 748 (771)
Q Consensus 740 ~~~~~~~H~ 748 (771)
++..+.||.
T Consensus 197 ~v~~~~GH~ 205 (259)
T PF12740_consen 197 FVAKDYGHM 205 (259)
T ss_pred EEeCCCCch
Confidence 788899996
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=100.57 Aligned_cols=228 Identities=13% Similarity=0.164 Sum_probs=135.4
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec---CCc-ccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++++++|+.+ |+.+-..+.-.++.+.+.|.....++. ... .|..- .-.-.-...++|||++|+..
T Consensus 91 p~yvsvd~~g~~v-f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ-~~~h~H~a~~tP~~~~l~v~------ 162 (346)
T COG2706 91 PCYVSVDEDGRFV-FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ-ESPHVHSANFTPDGRYLVVP------ 162 (346)
T ss_pred CeEEEECCCCCEE-EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc-cCCccceeeeCCCCCEEEEe------
Confidence 3678999999988 555554455556666555655544433 111 11000 00001266799999877664
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~ 254 (771)
|. +...|++++++.|...... ..+...+...++|+|+||
T Consensus 163 ------------------------------DL-------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-- 203 (346)
T COG2706 163 ------------------------------DL-------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-- 203 (346)
T ss_pred ------------------------------ec-------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc--
Confidence 22 2367888888877765552 123345778999999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC---------CCccccceeec
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFS 325 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~---------~~~~~~~p~~S 325 (771)
++|+-++- +..-.+|.++- ..++.++|.. +.........|
T Consensus 204 ---~aY~v~EL-----------~stV~v~~y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 204 ---YAYLVNEL-----------NSTVDVLEYNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred ---EEEEEecc-----------CCEEEEEEEcC-----------------CCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 56654322 22223444442 3455444321 22345678899
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|||+.| |.+++. ++.-.+|.+|-.++... ++. .....+.+ +..+.++++|+.|++
T Consensus 253 ~dGrFL-YasNRg-------~dsI~~f~V~~~~g~L~--------~~~--~~~teg~~-------PR~F~i~~~g~~Lia 307 (346)
T COG2706 253 PDGRFL-YASNRG-------HDSIAVFSVDPDGGKLE--------LVG--ITPTEGQF-------PRDFNINPSGRFLIA 307 (346)
T ss_pred CCCCEE-EEecCC-------CCeEEEEEEcCCCCEEE--------EEE--EeccCCcC-------CccceeCCCCCEEEE
Confidence 999976 677774 22223444554444321 111 11122333 357789999998888
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCC
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
+....+...+|.+|..||+++.+...
T Consensus 308 a~q~sd~i~vf~~d~~TG~L~~~~~~ 333 (346)
T COG2706 308 ANQKSDNITVFERDKETGRLTLLGRY 333 (346)
T ss_pred EccCCCcEEEEEEcCCCceEEecccc
Confidence 87777888999999999999988653
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=104.25 Aligned_cols=241 Identities=17% Similarity=0.138 Sum_probs=136.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.-.||..+.+..|... ++.+--+++-|+.+. ....|...+..++.+||.|+..||||.+++.........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 3457888888887533 222323334454433 2345777888999999999999999976554333222222222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCC---cchhhh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIP---DWCYVE 669 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~---~~~~~~ 669 (771)
.-...|+-++++++.+.. ..-....+|||+||++...+ .+++..-.++|..++. .+....+. .... -|+...
T Consensus 85 DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~k~~a~~vfG~ga-gwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHPKYAAFAVFGSGA-GWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCcccceeeEecccc-ccccchhhhhcccceeeccccc
Confidence 334678899999988742 34568999999999976644 4556322333333222 11111110 0000 011000
Q ss_pred h----ccCCCCccCCCCC----C--hhhHHHHh------hcCcc-----cccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 670 S----YGSKGKDSFTESP----S--VEDLTRFH------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 670 ~----~~~~~~~~~~~~~----~--~~~~~~~~------~~sp~-----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
. +....-..+.+.. . ..++..+. ...|. +....+++|++.+...+|+.+|+.....|..
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 0 0000001111111 1 11222222 22222 2356788999999999999999999999988
Q ss_pred HHHhCCCCEEEEEeCCC----CccCCCCCChHHHHHHHHHHH
Q 004141 729 ALREKGVETKVIVFPND----VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~----~H~~~~~~~~~~~~~~i~~fl 766 (771)
..+++ +.+...++.+ ||+-..-+..+..+++++.||
T Consensus 241 ~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 241 FYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred hhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 87765 4666666655 786443333357788999887
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.1e-10 Score=134.64 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=132.0
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 521 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 521 l~~~~~~P~~~~~--~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
++-+.|.|..... ....|.||++||.+.... .|.. .+..|.++||.|+++|+.. +. ... ......
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~--~~d~~~~~s~v~~L~~~g~~v~~~d~G~-~~--~~~---~~~~~~ 120 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSAD--MWDVTRDDGAVGILHRAGLDPWVIDFGS-PD--KVE---GGMERN 120 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCcc--ceecCCcccHHHHHHHCCCEEEEEcCCC-CC--hhH---cCccCC
Confidence 4556777753211 234578999999766543 3332 3788999999999999632 11 110 000011
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhh---------------
Q 004141 594 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 594 -~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~--------------- 656 (771)
...+..+.++++.+.+.. .+++.++||||||.+++.+++.+ +++++.+|+.+..+|+...
T Consensus 121 l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~ 197 (994)
T PRK07868 121 LADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAAD 197 (994)
T ss_pred HHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccc
Confidence 011223344444443332 35799999999999998888754 5589988876655443110
Q ss_pred ------hcCCCCCcchhhh-------------------hccC-CC-C-----ccCCC------CCC---hhhHHHHhhcC
Q 004141 657 ------VGTTDIPDWCYVE-------------------SYGS-KG-K-----DSFTE------SPS---VEDLTRFHSKS 695 (771)
Q Consensus 657 ------~~~~~~~~~~~~~-------------------~~~~-~~-~-----~~~~~------~~~---~~~~~~~~~~s 695 (771)
......+.|.... .+.. .. . ..+.. .+. .+....+...+
T Consensus 198 ~~~~~~~~~~~~p~~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n 277 (994)
T PRK07868 198 FMADHVFNRLDIPGWMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHN 277 (994)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhC
Confidence 0001111111000 0000 00 0 00000 000 00011111111
Q ss_pred cc-----------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE-EEeCCCCccCC--CCCChHHHHHH
Q 004141 696 PI-----------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV-IVFPNDVHGIE--RPQSDFESFLN 761 (771)
Q Consensus 696 p~-----------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~~H~~~--~~~~~~~~~~~ 761 (771)
.. ..+.++++|+|+++|++|.++|++.++.+.+.+.. .++ .+++++||... ......+.|..
T Consensus 278 ~~~~g~~~~~~~~~~L~~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~ 353 (994)
T PRK07868 278 RMMTGGFAINGQMVTLADITCPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPT 353 (994)
T ss_pred cccCceEEECCEEcchhhCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChH
Confidence 11 13678899999999999999999999988776643 444 57789999733 45566788999
Q ss_pred HHHHHHHh
Q 004141 762 IGLWFKKY 769 (771)
Q Consensus 762 i~~fl~~~ 769 (771)
+.+||.++
T Consensus 354 i~~wl~~~ 361 (994)
T PRK07868 354 VADWVKWL 361 (994)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-09 Score=111.08 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=119.8
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC-CCCeEEEEEcChhHHHHHHHHh
Q 004141 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 557 ~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
..+..+.++||+|+++||.|- |..+. ........+-|.++|.+.+.....+ ...+|+++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Gl---g~~y~---~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGL---GTPYL---NGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCC---CCccc---CcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 356677899999999999984 33321 1111122234444444444332112 3468999999999999988775
Q ss_pred hC----CCc---eeEEEecCCccchhhhhcCCCCCcc----------------------------------------hhh
Q 004141 636 QA----PDK---FVAAAARNPLCNLALMVGTTDIPDW----------------------------------------CYV 668 (771)
Q Consensus 636 ~~----p~~---~~~~v~~~p~~~~~~~~~~~~~~~~----------------------------------------~~~ 668 (771)
.. |++ +.++++.+|..++..+....+...+ |..
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 42 554 7888888888887544332211100 000
Q ss_pred hhccCCCCccC--------CCCCC-hh--hH-HHHhhcCc-ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC-
Q 004141 669 ESYGSKGKDSF--------TESPS-VE--DL-TRFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG- 734 (771)
Q Consensus 669 ~~~~~~~~~~~--------~~~~~-~~--~~-~~~~~~sp-~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g- 734 (771)
..........+ ..... .. .. ..+.+.+. ...-..-+.|++|.||..|.+||+.....+++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 00000000000 00000 00 00 11111111 00111235899999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.+++++.++..+|..... ......+.||...+
T Consensus 251 a~V~~~~~~~~~H~~~~~----~~~~~a~~Wl~~rf 282 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGAAF----ASAPDALAWLDDRF 282 (290)
T ss_pred CCEEEEecCCCChhhhhh----cCcHHHHHHHHHHH
Confidence 799999999999965322 23467788888765
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=102.95 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=128.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEEC--CCCCCCCChh--hhhcC--
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVN--YRGSLGFGEE--ALQSL-- 588 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d--~rG~~~~g~~--~~~~~-- 588 (771)
+..+.--+|.|+....+++.|++.++-|-... ...|. ..-+.....|++|+.|| .||..--|.+ |--..
T Consensus 25 ~c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 25 KCSMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ccceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 34466668889887777889999999995433 22222 22344568899999999 4554222221 10000
Q ss_pred --CCCccccchhhHHHHHHHHHH---------cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 589 --PGKVGSQDVNDVLTAIDHVID---------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 589 --~~~~~~~~~~D~~~~i~~l~~---------~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
.-+.....+..--++.+|+.+ .-.+|+.+++|+||||||+-|+..+.+.|.+++.+.+.+|+++....
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c- 181 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC- 181 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC-
Confidence 000000111221223333322 22378999999999999999999999999999999999999875432
Q ss_pred cCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH--HHHHHHHHhC-C
Q 004141 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG--LQYARALREK-G 734 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~--~~~~~~l~~~-g 734 (771)
.| +......|++. ....++.|...-.+........-+||-.|..|.+.+ +|. +.+.++.+.. .
T Consensus 182 ------pW------GqKAf~gYLG~-~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~~ 247 (283)
T KOG3101|consen 182 ------PW------GQKAFTGYLGD-NKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATWQ 247 (283)
T ss_pred ------cc------hHHHhhcccCC-ChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhcccc
Confidence 12 22222223332 223333333222333444555669999999999886 221 2344444422 3
Q ss_pred CCEEEEEeCCCCccCC
Q 004141 735 VETKVIVFPNDVHGIE 750 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~ 750 (771)
.++.+...+|-.|.+.
T Consensus 248 ~~v~~r~~~gyDHSYy 263 (283)
T KOG3101|consen 248 APVVFRLQEGYDHSYY 263 (283)
T ss_pred ccEEEEeecCCCccee
Confidence 5788888999999765
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-08 Score=104.30 Aligned_cols=284 Identities=16% Similarity=0.159 Sum_probs=150.8
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CcceEEEecCCccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGS 148 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~ 148 (771)
+-|+.+.++...+....+.... ........++||++++|..+.+. +.+.-..|.+... +....+-.....-.+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 3555555544444333222110 11345567889999988666554 2234445565633 5555554443111100
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 227 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 227 (771)
-.++.+|||++|+.+... ...+.+++++.
T Consensus 90 -------~~i~~~~~g~~l~vany~-------------------------------------------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 90 -------CHIAVDPDGRFLYVANYG-------------------------------------------GGSVSVFPLDDD 119 (345)
T ss_dssp -------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEEecCCCEEEEEEcc-------------------------------------------CCeEEEEEccCC
Confidence 267899999977665321 24566666654
Q ss_pred Cceeecc--------C----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 228 GEVQAVK--------G----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 228 ~~~~~l~--------~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
|.+.... + ........++.++|||+. + |+... ....|+.++++.
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~----v-~v~dl-------------G~D~v~~~~~~~------ 175 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF----V-YVPDL-------------GADRVYVYDIDD------ 175 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE----E-EEEET-------------TTTEEEEEEE-T------
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCE----E-EEEec-------------CCCEEEEEEEeC------
Confidence 4332220 0 011224457899999995 5 45432 222677777731
Q ss_pred hhhhhcCCCCCCccee---cC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC--CCCCCCCcccee
Q 004141 296 ELELKESSSEDLPVVN---LT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~---lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~ 369 (771)
.++++.. +. ......+..+|+|||++++.+ ++. .+.|.++++. ++..+.+
T Consensus 176 ---------~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~---------s~~v~v~~~~~~~g~~~~~----- 231 (345)
T PF10282_consen 176 ---------DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NEL---------SNTVSVFDYDPSDGSLTEI----- 231 (345)
T ss_dssp ---------TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETT---------TTEEEEEEEETTTTEEEEE-----
T ss_pred ---------CCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCC---------CCcEEEEeecccCCceeEE-----
Confidence 2222322 11 223347889999999976554 443 2457777766 3321111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCE
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDN 446 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~dg~~ 446 (771)
..+..... .+.+. .....+..||||++||++....+...+|.+|..+|+++.+..- ........++++|++
T Consensus 232 ~~~~~~~~----~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 232 QTISTLPE----GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EEEESCET----TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred EEeeeccc----ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 11111111 11110 0134567899999998877777777888888788888876432 122455678999999
Q ss_pred EEEEEeCCCCCCeEEEEEe
Q 004141 447 IIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 447 l~~~~~~~~~p~~l~~~~~ 465 (771)
|+.+....+. +.+++.
T Consensus 306 l~Va~~~s~~---v~vf~~ 321 (345)
T PF10282_consen 306 LYVANQDSNT---VSVFDI 321 (345)
T ss_dssp EEEEETTTTE---EEEEEE
T ss_pred EEEEecCCCe---EEEEEE
Confidence 9887655443 555444
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.3e-10 Score=111.91 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--
Q 004141 536 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 611 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 611 (771)
...+|||+-|-...... +....++..|...||.|+.+.++.+ .|+|... -..+++|+.++|+||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~S--------L~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSS--------LDRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S----------HHHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcch--------hhhHHHHHHHHHHHHHHhhcc
Confidence 45689999773332222 3444566777778999999998853 3454332 2357899999999999873
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhCC-----CceeEEEecCCccchhhhhcCCCC-Ccch----hhhhc-----cCCC-
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALMVGTTDI-PDWC----YVESY-----GSKG- 675 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p-----~~~~~~v~~~p~~~~~~~~~~~~~-~~~~----~~~~~-----~~~~- 675 (771)
....++|+|+|||-|.+-+++++.... ..+.++|+.+|+.|...+...... .... ....+ +...
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 135789999999999999999987642 579999999999886433221110 0000 00000 0000
Q ss_pred ----CccCC-CCCChhhHHHHhhcCc----------------ccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004141 676 ----KDSFT-ESPSVEDLTRFHSKSP----------------ISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ----~~~~~-~~~~~~~~~~~~~~sp----------------~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
..... ..|. .....+.-.+| .....+++.|+|++.+++|+.||... -+.+.++++.+
T Consensus 184 p~~~~~~~~~~~Pi-TA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 184 PREFTPLVFYDTPI-TAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp ----GGTTT-SS----HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT------------------
T ss_pred eccccccccCCCcc-cHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceecccccccccccccccc
Confidence 00000 1111 11111111111 12456778899999999999998643 34566666554
Q ss_pred CC----CEEEEEeCCCCccCCCCCCh---HHHHHHHHHHHH
Q 004141 734 GV----ETKVIVFPNDVHGIERPQSD---FESFLNIGLWFK 767 (771)
Q Consensus 734 g~----~~~~~~~~~~~H~~~~~~~~---~~~~~~i~~fl~ 767 (771)
-. ....-++||+.|.+..+... ....+++..||+
T Consensus 263 ~~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 263 TNPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp -----------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccCC
Confidence 22 12345899999998865433 355667777764
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=106.50 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=164.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCC--CCeEEEEecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~ 176 (771)
.+....||+|++.||..+-.+ ...+|.+. +.+....+.. ...+ +++.|+|. +..||..+.++..
T Consensus 177 Pis~~~fS~ds~~laT~swsG--~~kvW~~~-~~~~~~~l~gH~~~v----------~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG--LVKVWSVP-QCNLLQTLRGHTSRV----------GAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cceeeEeecCCCeEEEeecCC--ceeEeecC-CcceeEEEeccccce----------eeEEEccCCCccceeeeccCCce
Confidence 467788999999998766543 33333333 2333333332 2222 68999997 6788888887765
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|.............+..-...+.|-|++.-+.+..-+..=.+||+.++....+. -....++...+|.|||.
T Consensus 244 k--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGS---- 316 (459)
T KOG0272|consen 244 K--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGS---- 316 (459)
T ss_pred e--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCc----
Confidence 5 3332222222222334444456678888666656666677788999998765552 22344788999999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+.++- .+.-..|| |+ -+| ..-.|..+...+.++.|||+|-.||..+
T Consensus 317 -L~~tGG------------lD~~~RvW--Dl-----------------Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 317 -LAATGG------------LDSLGRVW--DL-----------------RTGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred -eeeccC------------ccchhhee--ec-----------------ccCcEEEEecccccceeeEeECCCceEEeecC
Confidence 554431 01112344 44 334 3455667777899999999999999877
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.++ ...+||+.......+.... ..-+..++|+|++...+++++.++..+|
T Consensus 365 ~Dn-----------t~kVWDLR~r~~ly~ipAH-------------------~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SDN-----------TCKVWDLRMRSELYTIPAH-------------------SNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CCC-----------cEEEeeecccccceecccc-------------------cchhhheEecccCCeEEEEcccCcceee
Confidence 664 4667777654432221111 1235678899977778888888999999
Q ss_pred EEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEE
Q 004141 416 ISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 416 ~~~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
|. ..+.. ++.|....+-+.....++|+..++..
T Consensus 415 Ws--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 415 WS--TRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ec--CCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 95 22433 33444444444455677788766543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=102.30 Aligned_cols=235 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--------cceEE
Q 004141 67 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--------QLEKE 138 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--------~~~~~ 138 (771)
.+...+.++.|+..... .+....|+.-.+.+...+|++||++|+.+.+.. ++-....+|+.| +.+++
T Consensus 76 SGD~sG~vRIWdtt~~~----hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr-erfg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 76 SGDVSGKVRIWDTTQKE----HILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR-ERFGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred ecCCcCcEEEEeccCcc----eeeeeeeeecccccccceeCCCCcEEEEEecCc-cceeEEEEecCCCccceeeccceeE
Confidence 33445566666542221 111223333336688999999999999887765 333344455433 22333
Q ss_pred EecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004141 139 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
-.+.... -.+|+-..=|.|+. ++|--..+ .+-......+..+...+.|+||+..-.+...+.
T Consensus 151 ns~~~Kp------sRPfRi~T~sdDn~-v~ffeGPP-----------FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDg 212 (603)
T KOG0318|consen 151 NSVDFKP------SRPFRIATGSDDNT-VAFFEGPP-----------FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDG 212 (603)
T ss_pred eeeeccC------CCceEEEeccCCCe-EEEeeCCC-----------eeeeecccccccceeeEEECCCCCeEEEecCCc
Confidence 3332221 12345555666664 44421111 111122334556677888999943333445578
Q ss_pred eEEEEEccCCceeec-c-CCCCCCccceEEEecCCCCCccEEEEEeecCc-------ce---------------eeeeee
Q 004141 219 SLFVININSGEVQAV-K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE-------TR---------------KLGIKY 274 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l-~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~-------~~---------------~~g~~~ 274 (771)
.++++|-.+|+..-. . ..+...++..++||||+++ ++.++-... .+ .+|..+
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~----~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ----FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCce----EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 999999888865443 2 1234557889999999999 988763222 11 122221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|..+.+++. ++.-.. .+......+..+...+.....||||++|+-.+.+.
T Consensus 289 ---qkd~lItVSl~G~------in~ln~-~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 289 ---QKDHLITVSLSGT------INYLNP-SDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred ---eCCeEEEEEcCcE------EEEecc-cCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 2335555554210 000000 01123455566777899999999999998777664
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-08 Score=100.64 Aligned_cols=253 Identities=18% Similarity=0.220 Sum_probs=131.0
Q ss_pred HHHHhhcCccccceEE-EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC
Q 004141 30 LLQDFTNISSIDKAWT-FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 108 (771)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 108 (771)
+-+-+..+|+...+.- .=.-.|-|..|.|.. .+.++...++... ...++|... ..+.-..+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~~-~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNPA-SVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCcc-ceeeecccc-----ceeEEEEeCC
Confidence 3445566676665421 112356788999963 2355665553332 233444333 4466788999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC--CCccCCC
Q 004141 109 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSLGS 185 (771)
Q Consensus 109 dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~~~ 185 (771)
.|-++|-- +...-.++|+..+...++... .-..|.| ..++|++|+++|+-+.+.+..-. ..|+..
T Consensus 70 sG~yiASG-----D~sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 70 SGFYIASG-----DVSGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred CceEEeec-----CCcCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 99988742 222356777433323332211 1222333 79999999999999987654311 111110
Q ss_pred CCCCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC--CCCCccceEEEecCCCCCccEEEEEe
Q 004141 186 TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI--PKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~--~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...-....+..-.....+.+..- ...++..++.+-.+. |.+-+..-+ ....-+..+.|||||+. ++.++
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffe---GPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g 209 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFE---GPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG 209 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEee---CCCeeeeecccccccceeeEEECCCCCe----EEEec
Confidence 00000000111111111111100 000011111222211 111111000 11224668899999998 77665
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC---CCCccccceeecCCCCEEEEEecCC
Q 004141 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT---ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt---~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+..++++|= .+|+. -.|. .+.+.+...+||||+++++..+.+.
T Consensus 210 ---------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 210 ---------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ---------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 3347888884 55543 3344 4567899999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCC
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+.+||+.++..
T Consensus 258 -----------t~KIWdVs~~sl 269 (603)
T KOG0318|consen 258 -----------TIKIWDVSTNSL 269 (603)
T ss_pred -----------eEEEEEeeccce
Confidence 367778777643
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-09 Score=105.16 Aligned_cols=268 Identities=16% Similarity=0.185 Sum_probs=151.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|+|+|+.|++.... +.-.+|.+ ..+............ ...+.|+|+++.|+..+.+....
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~-~~~~~~~~~~~~~~~---------i~~~~~~~~~~~l~~~~~~~~i~- 76 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDL-ETGELLRTLKGHTGP---------VRDVAASADGTYLASGSSDKTIR- 76 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEe-eCCCcEEEEecCCcc---------eeEEEECCCCCEEEEEcCCCeEE-
Confidence 457889999999999887643 22222322 222222222221111 14889999999888877644321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|.............+........|.++ +..++... ...|.+||+.+++..... ......+..+.|+|+++.
T Consensus 77 -i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~---- 149 (289)
T cd00200 77 -LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF---- 149 (289)
T ss_pred -EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE----
Confidence 2222211111111112222334456666 34444434 789999999866654441 223446788999999764
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....|+++|+ ..++ ...+..+...+....|+|+|+.|++.+.
T Consensus 150 l~~~~---------------~~~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 150 VASSS---------------QDGTIKLWDL-----------------RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEEEc---------------CCCcEEEEEc-----------------cccccceeEecCccccceEEECCCcCEEEEecC
Confidence 44432 2236888887 4333 3444445556888999999998888775
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ ..|.++|+.++......... ...+..+.|++++. +++....++ .|+
T Consensus 198 ~-----------~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~-~~~~~~~~~--~i~ 244 (289)
T cd00200 198 D-----------GTIKLWDLSTGKCLGTLRGH-------------------ENGVNSVAFSPDGY-LLASGSEDG--TIR 244 (289)
T ss_pred C-----------CcEEEEECCCCceecchhhc-------------------CCceEEEEEcCCCc-EEEEEcCCC--cEE
Confidence 3 35888888765432221110 01245678999965 445544344 455
Q ss_pred EEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004141 417 SVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+++.+++.... ......+....++++++.++...
T Consensus 245 i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 556666554443 32333445567777777665544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-09 Score=97.79 Aligned_cols=230 Identities=15% Similarity=0.144 Sum_probs=134.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 147 (771)
..++.+++||+.++ ...+||.... ..+...++|||.++|+--+.+. .+.+| .-+... .+-......
T Consensus 82 swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tiklwnt~g~ck-~t~~~~~~~- 148 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKLWNTLGVCK-YTIHEDSHR- 148 (315)
T ss_pred cccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeeeeeecccEE-EEEecCCCc-
Confidence 34567888888544 3344554443 6789999999999997654433 56677 323222 222111112
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 227 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 227 (771)
+|..++.|||...-..+++.. -+..+-+||+.+
T Consensus 149 -----~WVscvrfsP~~~~p~Ivs~s------------------------------------------~DktvKvWnl~~ 181 (315)
T KOG0279|consen 149 -----EWVSCVRFSPNESNPIIVSAS------------------------------------------WDKTVKVWNLRN 181 (315)
T ss_pred -----CcEEEEEEcCCCCCcEEEEcc------------------------------------------CCceEEEEccCC
Confidence 345899999996333332211 125788999998
Q ss_pred CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 228 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 228 ~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
-+.+.-- ......+...+.||||.. +++.+ ..+.++++|+ +.+
T Consensus 182 ~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL-----------------~~~ 224 (315)
T KOG0279|consen 182 CQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDL-----------------NEG 224 (315)
T ss_pred cchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEc-----------------cCC
Confidence 8776651 233457788999999996 66643 4558999998 444
Q ss_pred cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 308 PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
+.-.-.+....+.+.+|||.-=+|+-... ..|.+||+.++....-. ..+.+-+ .... .+.+
T Consensus 225 k~lysl~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~l-~~d~~g~----s~~~--~~~~ 285 (315)
T KOG0279|consen 225 KNLYSLEAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEEL-KLDGIGP----SSKA--GDPI 285 (315)
T ss_pred ceeEeccCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhhc-ccccccc----cccc--CCcE
Confidence 43222344556899999998655543332 23888998876542110 0000000 0000 0011
Q ss_pred cCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 388 SSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
| -+++||+||.+||.. ..++..++|.+
T Consensus 286 c---lslaws~dG~tLf~g-~td~~irv~qv 312 (315)
T KOG0279|consen 286 C---LSLAWSADGQTLFAG-YTDNVIRVWQV 312 (315)
T ss_pred E---EEEEEcCCCcEEEee-ecCCcEEEEEe
Confidence 1 267899999988643 34555666654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-08 Score=93.73 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=144.8
Q ss_pred eeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEE-ecCC
Q 004141 71 KKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF-HVPQ 143 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~ 143 (771)
++.+.+|.+..+..+ .++++... ..+...+.|+||.+.+-.+-.. ...+| .+++.++.+ -...
T Consensus 37 Dk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 37 DKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred ceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecCC
Confidence 345666666554332 23443322 4577889999999876544333 66777 344444443 3345
Q ss_pred cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEE
Q 004141 144 TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVI 223 (771)
Q Consensus 144 ~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~ 223 (771)
++ .+++||||.++|+..+. +..|-+|
T Consensus 107 dV----------lsva~s~dn~qivSGSr--------------------------------------------DkTiklw 132 (315)
T KOG0279|consen 107 DV----------LSVAFSTDNRQIVSGSR--------------------------------------------DKTIKLW 132 (315)
T ss_pred ce----------EEEEecCCCceeecCCC--------------------------------------------cceeeee
Confidence 55 59999999999987543 3578889
Q ss_pred EccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004141 224 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 224 d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+.-++....+....+..-+..+.|||.... .++++-. -+..+-++|+
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~----p~Ivs~s-------------~DktvKvWnl---------------- 179 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESN----PIIVSAS-------------WDKTVKVWNL---------------- 179 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCC----cEEEEcc-------------CCceEEEEcc----------------
Confidence 988776655521111335778999998644 3333311 1225777777
Q ss_pred CCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004141 304 SEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 304 ~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.+-+. .....+.+.+....+||||..+++... ..++++||++.++...-....
T Consensus 180 -~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk-----------dg~~~LwdL~~~k~lysl~a~-------------- 233 (315)
T KOG0279|consen 180 -RNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK-----------DGEAMLWDLNEGKNLYSLEAF-------------- 233 (315)
T ss_pred -CCcchhhccccccccEEEEEECCCCCEEecCCC-----------CceEEEEEccCCceeEeccCC--------------
Confidence 44443 334456677889999999998876222 346899999876652211111
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCC-------c--eeeEEeecCCEEEEEEe
Q 004141 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESN-------F--SWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~-------~--~~~~~s~dg~~l~~~~~ 452 (771)
..+.+++|+|+--.| .... +....|| |++++... .|...... . -...||.||..|+.-.+
T Consensus 234 ------~~v~sl~fspnrywL-~~at-~~sIkIw--dl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 234 ------DIVNSLCFSPNRYWL-CAAT-ATSIKIW--DLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred ------CeEeeEEecCCceeE-eecc-CCceEEE--eccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 124678999985433 3222 3334444 66665433 22221110 0 12356677777766553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=93.40 Aligned_cols=289 Identities=15% Similarity=0.090 Sum_probs=158.2
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~ 149 (771)
+.|+++.+++..++...+ ..-.+.+..+..+|+|+++.|..+-..+ .+.-.-|.++ ++|....+-......+.
T Consensus 16 ~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~-- 90 (346)
T COG2706 16 QGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP-- 90 (346)
T ss_pred CceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC--
Confidence 456666676444432211 1111235677889999999986655442 2444566776 44665554433221110
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-C
Q 004141 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-G 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~ 228 (771)
--.++.++||+.|+.+.... ..|-++.+.. |
T Consensus 91 -----p~yvsvd~~g~~vf~AnY~~-------------------------------------------g~v~v~p~~~dG 122 (346)
T COG2706 91 -----PCYVSVDEDGRFVFVANYHS-------------------------------------------GSVSVYPLQADG 122 (346)
T ss_pred -----CeEEEECCCCCEEEEEEccC-------------------------------------------ceEEEEEcccCC
Confidence 03678999998765543221 2333333321 2
Q ss_pred ceeecc-------CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 229 EVQAVK-------GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 229 ~~~~l~-------~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+..+. ..+. ..-.-...++|||+. |+... + ..-+|+++++
T Consensus 123 ~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-------L-------G~Dri~~y~~---------- 174 (346)
T COG2706 123 SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-------L-------GTDRIFLYDL---------- 174 (346)
T ss_pred ccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-------c-------CCceEEEEEc----------
Confidence 221110 0011 111345679999996 65543 1 1226888888
Q ss_pred hhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004141 298 ELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
+.|.....+ ......+...|.|+|| ++|+-++- ++.-.+|.++-..++..++ -.
T Consensus 175 -------~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-~aY~v~EL-------~stV~v~~y~~~~g~~~~l-------Q~ 232 (346)
T COG2706 175 -------DDGKLTPADPAEVKPGAGPRHIVFHPNGK-YAYLVNEL-------NSTVDVLEYNPAVGKFEEL-------QT 232 (346)
T ss_pred -------ccCccccccccccCCCCCcceEEEcCCCc-EEEEEecc-------CCEEEEEEEcCCCceEEEe-------ee
Confidence 333332222 3344578899999999 45666554 2233344444333333221 11
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CC-CceeeEEeecCCEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~-~~~~~~~s~dg~~l~~~ 450 (771)
+... .++|.|-. +...+..++||+.||.+....+...+|.||..+|++..+... .+ ......++++|+.|+++
T Consensus 233 i~tl--P~dF~g~~--~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 233 IDTL--PEDFTGTN--WAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred eccC--ccccCCCC--ceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1111 23455421 234566899999888776666777899999999987766432 22 13345688899998888
Q ss_pred EeCCCCCCeEEEEEeccc
Q 004141 451 SSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 451 ~~~~~~p~~l~~~~~~~~ 468 (771)
....+. -.+|.++-.++
T Consensus 309 ~q~sd~-i~vf~~d~~TG 325 (346)
T COG2706 309 NQKSDN-ITVFERDKETG 325 (346)
T ss_pred ccCCCc-EEEEEEcCCCc
Confidence 876666 44555554333
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-11 Score=118.44 Aligned_cols=174 Identities=17% Similarity=0.255 Sum_probs=106.0
Q ss_pred cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe
Q 004141 567 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 567 ~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 646 (771)
|.|+++|.||.+..... ..........+|+.+.++.+++.. ..+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREAL--GIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHH--TTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHh--CCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999995443210 001233345788999999988874 345599999999999999999999999999999
Q ss_pred cCCcc--ch-h------h--hhcC--CCCCc------------ch----hhhhc-cCCCC-----ccCCCC--CCh----
Q 004141 647 RNPLC--NL-A------L--MVGT--TDIPD------------WC----YVESY-GSKGK-----DSFTES--PSV---- 685 (771)
Q Consensus 647 ~~p~~--~~-~------~--~~~~--~~~~~------------~~----~~~~~-~~~~~-----~~~~~~--~~~---- 685 (771)
.++.. .. . . +... ..... +. ..... ..... ..+... ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 00 0 0 0000 00000 00 00000 00000 000000 000
Q ss_pred --hhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 686 --EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 686 --~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+....+...+..+++|+|+++|++|..+|++....+.+.+.. .++++++++||...
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~~----~~~~~~~~~GH~~~ 217 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIPN----SQLVLIEGSGHFAF 217 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHSTT----EEEEEETTCCSTHH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcCC----CEEEECCCCChHHH
Confidence 00011122233345678999999999999999999888886665544 89999999999754
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=101.25 Aligned_cols=105 Identities=23% Similarity=0.369 Sum_probs=73.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
++..++-.|. ....|+++++|||+.++ ..|...+..+. ..-..|+++|+|| ||.+-......--......
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S~--LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSSA--LSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCcccc--hhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 5666666663 55679999999988774 36777777664 4567889999999 5554322211111223367
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
|+.+.++++... .+..|.|+||||||.++.+.+..
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 888888777644 35679999999999999888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-09 Score=114.66 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=72.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 120 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 120 (771)
.|.+|+||++++|+....+ ..+.+...||+.+. ++..+++|... ....|+|||||++|+|+++..
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 5556889999999987666 33346789999764 33446776553 378899999999999987541
Q ss_pred ---CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 121 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 121 ---~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+..+++.++ +++...+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 1344566665 4444333 222223 7999999999999985
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-09 Score=103.59 Aligned_cols=269 Identities=14% Similarity=0.171 Sum_probs=161.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+-||..||+.+..+ ..++| ..|.......... |. +-.+.|+-+|.+|+-..-+++.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~Hk---gP------I~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQHK---GP------IFSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhccC---Cc------eEEEEEcCCCCEEEeccCCccE-
Confidence 4588899999999999987765 67788 5565444333222 12 2589999999999887655432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.|+............+.....++.|..+ .+-........|+|+-+....+..-. +.....+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~-~GH~g~V~alk~n~tg~L---- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF-IGHHGEVNALKWNPTGSL---- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee-ecccCceEEEEECCCCce----
Confidence 12332111111111111111122333322 12222223456888777665554331 335567888999999996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE-------
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF------- 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~------- 330 (771)
|+-.+.+ ..-.||... ++.....|..+...+....|||+|.-
T Consensus 374 LaS~SdD-------------~TlkiWs~~------------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMG------------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMN 422 (524)
T ss_pred EEEecCC-------------CeeEeeecC------------------CCcchhhhhhhccceeeEeecCCCCccCCCcCC
Confidence 6665521 112455443 55566677777777888999999863
Q ss_pred --EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 331 --LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 331 --l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
|+..+.+ +.+.+||+..+........ +...++.++|||||++| .+.+
T Consensus 423 ~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsGs 471 (524)
T KOG0273|consen 423 LMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASGS 471 (524)
T ss_pred ceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-EecC
Confidence 2222222 3466777766554221111 01135788999999976 4555
Q ss_pred eCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004141 409 WGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~ 453 (771)
.++...|| +..++++.+-..+.+.+....|+.+|+.|.+..+.
T Consensus 472 ~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 472 LDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 56666666 56688888777766666778899999888776653
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.9e-09 Score=97.84 Aligned_cols=117 Identities=26% Similarity=0.305 Sum_probs=88.5
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+....++.|. ..+.+|+|+|+||..- ....|....+.+++.||.|++|++-.... .-+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~l--~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFNL--YNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechhh--hhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 3455688887 6788999999999433 24467778899999999999999764211 123445788
Q ss_pred HHHHHHHHHHcC--------CCCCCeEEEEEcChhHHHHHHHHhhCC--CceeEEEecCCccc
Q 004141 600 VLTAIDHVIDMG--------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~--------~~d~~ri~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~p~~~ 652 (771)
..+.++|+.+.- ..+..+++++|||.||-.|..+|..+. -.|.++|.+.|+..
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G 158 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAG 158 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCC
Confidence 888899987641 156789999999999999999998663 24788888888753
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-09 Score=104.81 Aligned_cols=237 Identities=12% Similarity=0.091 Sum_probs=148.4
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|+|. +..||..+.++ ...+|.-.+...+-++.... . ....+.|.|+|++|+..+.+.+-
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-~------RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-A------RVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-h------hheeeeecCCCceeeecccccch
Confidence 56888999997 55677655443 45556222222222221111 1 12689999999999998877653
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
+ .|+...+........+........|.+|+.-..++.-+.-=.|||+.+|...-+ ..+. ..+-++.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 455555555555556666677888999965555555566668999999986665 3443 36789999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecC-CCCEEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~Sp-DG~~l~f~ 334 (771)
|+..+. +. ..-++||- .-.+.-.+..+..-+..++|+| -|++|+..
T Consensus 360 --lATgs~-------------Dn--t~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS-------------DN--TCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC-------------CC--cEEEeeec----------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 887661 22 34444441 2233455666667789999999 67778777
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+.+. .+-+|.-.+....+...+.. .-+.++..|+||..| .+++.+...+
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe-------------------~kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHE-------------------GKVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCc-------------------cceEEEEeccCCceE-EEeccCceee
Confidence 7664 24444444444332222221 124466789999855 5666677777
Q ss_pred EEE
Q 004141 415 IIS 417 (771)
Q Consensus 415 l~~ 417 (771)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 774
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=111.81 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=170.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....|||||+.++...... +..+|. .... .+.....+..- .+..++|||||+.|+-.+.+.+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~------~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTR------GVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhcccccccc------ceeeeEECCCCcEEEEecCCceE
Confidence 3466689999999988765443 555562 2221 11111111111 23699999999999888887765
Q ss_pred CCCCccC-CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+ .|+. ......+.+..+..+.....|.++....+.+..+..+.+||+.+++..... ......+....+++||..
T Consensus 228 r--iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~-- 302 (456)
T KOG0266|consen 228 R--IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL-- 302 (456)
T ss_pred E--EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE--
Confidence 5 4444 222344556678888888899999766777888899999999998876662 233347788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCc--cccceeecCCCCE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS--SAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~--~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ .++. ...+..... .+.+..|||+|++
T Consensus 303 --l~s~s---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 303 --LVSAS---------------YDGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred --EEEcC---------------CCccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 76654 2336888887 5665 234443333 3788999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+-...+ ..|.+||+..+........... . .+ ....+..+++|+.+ ++...+
T Consensus 349 ll~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~----------~----~~--~~~~~~~~~~~~~i-~sg~~d 400 (456)
T KOG0266|consen 349 LLSASLD-----------RTLKLWDLRSGKSVGTYTGHSN----------L----VR--CIFSPTLSTGGKLI-YSGSED 400 (456)
T ss_pred EEEecCC-----------CeEEEEEccCCcceeeecccCC----------c----ce--eEecccccCCCCeE-EEEeCC
Confidence 8765544 3577888876654222111100 0 00 12234447788755 444444
Q ss_pred CeeEEEEEECCCCcEEEe-cCC-CCCceeeEEeecCCEEEEEEeCCCCCCeEE
Q 004141 411 SSQVIISVNVSSGELLRI-TPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l-~~~-~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~ 461 (771)
+. ++.+|+.++..... ... ...+....+.+..+.++......+..-.+|
T Consensus 401 ~~--v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w 451 (456)
T KOG0266|consen 401 GS--VYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLW 451 (456)
T ss_pred ce--EEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEe
Confidence 44 55557776654433 333 233333455555555554444344433333
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-08 Score=105.90 Aligned_cols=252 Identities=16% Similarity=0.197 Sum_probs=140.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++||||+.||...+++ -..+|+ .... ...++...++ ..+.|+.+|+.|+..+-+++
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLDGt 415 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLDGT 415 (893)
T ss_pred cceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecCCe
Confidence 3577899999999998765543 456663 2222 2222333444 58999999999999888877
Q ss_pred CCCCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCc--cCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGK--RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~--~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..... ....-+....+..-. ..+...+. |+.+... ..-.||+|++++|+...+. ..++..+..++|+|+|.
T Consensus 416 VRAwDlk--RYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 416 VRAWDLK--RYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGS 491 (893)
T ss_pred EEeeeec--ccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh-cCCCCcceeeEEccccC
Confidence 6542211 111101000000000 00011111 3333222 2468999999999987772 33455678889999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+-.+|... |.++|+=+ ..++.+.|. ....+..++|+|||+.|+
T Consensus 492 ~----LaS~SWDkT---------------VRiW~if~---------------s~~~vEtl~-i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 492 L----LASGSWDKT---------------VRIWDIFS---------------SSGTVETLE-IRSDVLAVSFRPDGKELA 536 (893)
T ss_pred e----EEeccccce---------------EEEEEeec---------------cCceeeeEe-eccceeEEEEcCCCCeEE
Confidence 8 888887533 33444300 334444442 223467899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE------Eeccc---ccCCCCCcccccCCCCCCccccCCCEE
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV------IPVVQ---CAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~~~---~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
....+. +|-.||...+...-...+..++ .+... ..+... ...+++|+||+.|
T Consensus 537 VaTldg-----------qItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~--------Ftti~ySaDG~~I 597 (893)
T KOG0291|consen 537 VATLDG-----------QITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT--------FTTICYSADGKCI 597 (893)
T ss_pred EEEecc-----------eEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc--------eEEEEEcCCCCEE
Confidence 988763 4666665443321111111110 00000 011122 2478899999977
Q ss_pred EEEeeeCCeeEEEEEECCCCcEE
Q 004141 404 LLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+.. +....+..+++.++-+.
T Consensus 598 lAg---G~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 598 LAG---GESNSICIYDVPEGVLL 617 (893)
T ss_pred Eec---CCcccEEEEECchhhee
Confidence 643 23345777787777544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.6e-09 Score=100.39 Aligned_cols=154 Identities=18% Similarity=0.314 Sum_probs=97.6
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC
Q 004141 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
.+.|+|+|+.|++.......+. ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~------------------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKS------------------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeeccC------------------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 6789999999999876321110 01111 3468999988777766663 3
Q ss_pred CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004141 237 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 237 ~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.....+.+++|||+|+. ++.+.- ..+..+.++|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g-------------~~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYG-------------SMPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEc-------------cCCcccEEEcC-----------------cccEeEeec--C
Confidence 34446899999999999 877641 12225667775 433333332 2
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
.......|||+|+.|+.....+ ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3455689999999999877543 1245888988743331111100 1346789
Q ss_pred ccCCCEEEEEee
Q 004141 397 LSDGCTMLLSSI 408 (771)
Q Consensus 397 s~Dg~~l~~~~~ 408 (771)
||||++|+.++.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998887664
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.8e-10 Score=124.05 Aligned_cols=128 Identities=25% Similarity=0.289 Sum_probs=91.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-C-cEEEEECCC-CCCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G-~~Vv~~d~r-G~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+...++.|......++.|+||++|||++........ ....|+.. + ++|+.++|| |..|+.........++ ..+
T Consensus 79 l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n---~g~ 154 (493)
T cd00312 79 LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN---YGL 154 (493)
T ss_pred CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc---hhH
Confidence 445688887543467889999999998766544332 23444443 3 999999999 6666654332222233 337
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCccc
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~~ 652 (771)
.|+..+++|+.++ ...|+++|.|+|+|.||.++.+++.. .+.+|+++|+.++...
T Consensus 155 ~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 155 KDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 8999999999875 34799999999999999999988875 2457889998887653
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-08 Score=102.46 Aligned_cols=249 Identities=12% Similarity=0.062 Sum_probs=156.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+++....|.|.-. |+.+..-+ +.-++|.++ ......+.+.+..- ++....|+|+|+..+|.+.
T Consensus 214 ~~I~sv~FHp~~p-lllvaG~d-~~lrifqvDGk~N~~lqS~~l~~f---------Pi~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAP-LLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKF---------PIQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCc-eEEEecCC-CcEEEEEecCccChhheeeeeccC---------ccceeeecCCCceEEEecc-----
Confidence 4588999999655 44554443 666788777 33333333333221 2358899999996666543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC--CCccceEEEecCCCCCc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~--~~~~~~~~wspDg~~~~ 255 (771)
.+.-+|.||+.+.++.++...-+ ......+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23689999999999988841111 235678899999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|++.+ +.++|+++.. .+++...--.-.+.+....||.||+.|+...
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99987 4458888876 5555433233467788999999998775443
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
. ..++|+||+..... ...+.. +++. .-.++|.|.+|. ++.+.+..|-.+|
T Consensus 364 -~----------~GeV~v~nl~~~~~----------~~rf~D--~G~v------~gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 -G----------TGEVYVWNLRQNSC----------LHRFVD--DGSV------HGTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred -C----------CceEEEEecCCcce----------EEEEee--cCcc------ceeeeeecCCCc-eEEeccCcceEEE
Confidence 2 23799999987532 111111 1111 124678899998 4455566777788
Q ss_pred EEEE--CCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 416 ISVN--VSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 416 ~~~d--~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
|-.+ ..+++.+.+..-. ..+....|++|+..|+.+++... -.+.++.+++.+
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k--nalrLVHvPS~T 470 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKK--NALRLVHVPSCT 470 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccc--cceEEEecccee
Confidence 8654 2344555554322 24566789999886665554333 335555555543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-07 Score=96.76 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred cceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCcc
Q 004141 320 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 320 ~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~ 396 (771)
..|.+++ ||+ .+|.+.+. .|+.+|+.+.+..... ...++... .++--|| +....++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~~-----~~~~~~~~~~~~~wrP~----g~q~ia~ 255 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFLP-----AIEAFTEAEKADGWRPG----GWQQVAY 255 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceecc-----eeeeccccccccccCCC----cceeEEE
Confidence 5567788 775 56777663 4999998765543211 11111111 1122232 2234789
Q ss_pred ccCCCEEEEEeee-------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC-EEEEEEeCCCCCCeEEEEEeccc
Q 004141 397 LSDGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 397 s~Dg~~l~~~~~~-------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~-~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++||+++|+.... .+..+++.+|..++++..-...........+++|++ .|+.+.... ..+.++|..++
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s---~~VsViD~~t~ 332 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD---KTLYIFDAETG 332 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC---CcEEEEECcCC
Confidence 9999999885532 123589999999998765443333345678999999 555444322 33778776554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.7e-09 Score=101.89 Aligned_cols=224 Identities=18% Similarity=0.135 Sum_probs=132.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.-.+.|.++++||-.++ ...|......|+ ..|-.|+++|.|. +|.+..-.. ..+....+|+...++......
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHccccc
Confidence 44578999999996655 356777777664 4677999999998 555432211 113344667777777665432
Q ss_pred CCCCCeEEEEEcChhH-HHHHHHHhhCCCceeEEEec--CCc-cch---------hhhhcCCCC----Cc--ch---hhh
Q 004141 612 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR--NPL-CNL---------ALMVGTTDI----PD--WC---YVE 669 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~--~p~-~~~---------~~~~~~~~~----~~--~~---~~~ 669 (771)
-..++.++|||||| .++++.+...|+.+..+|+. +|. +.. ..+...... +. +. +.+
T Consensus 121 --~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~ 198 (315)
T KOG2382|consen 121 --RLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIE 198 (315)
T ss_pred --ccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 24579999999999 77777777888877655532 331 110 000000000 00 00 000
Q ss_pred hccCCC--------Cc------cCCC-CCC---hhhHHHHhhcCccccc--CCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 670 SYGSKG--------KD------SFTE-SPS---VEDLTRFHSKSPISHI--SKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 670 ~~~~~~--------~~------~~~~-~~~---~~~~~~~~~~sp~~~~--~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
...... .+ .+.. .+. .+....+...+....+ .....|+|+++|.++..++.++-.++.+.
T Consensus 199 ~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~ 278 (315)
T KOG2382|consen 199 VGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKI 278 (315)
T ss_pred HhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHh
Confidence 000000 00 0000 000 1111122122332223 44568999999999999998877777766
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+.. +++..++++||+...+. ..++.+.|.+|+.+..
T Consensus 279 fp~----~e~~~ld~aGHwVh~E~-P~~~~~~i~~Fl~~~~ 314 (315)
T KOG2382|consen 279 FPN----VEVHELDEAGHWVHLEK-PEEFIESISEFLEEPE 314 (315)
T ss_pred ccc----hheeecccCCceeecCC-HHHHHHHHHHHhcccC
Confidence 665 89999999999887544 4588999999987653
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=87.59 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC--CCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG--SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG--~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..-+||+.||.+..+.+..+...+..|+.+|+.|..++++= .--.|.. .+..-...-....+.++..|.+. .
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~r----kPp~~~~t~~~~~~~~~aql~~~--l 86 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGRR----KPPPGSGTLNPEYIVAIAQLRAG--L 86 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccCC----CCcCccccCCHHHHHHHHHHHhc--c
Confidence 34578888998777777777778889999999999999642 1111110 01111111233445555666555 4
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEec-CCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR-NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
+..++.+-|+||||-++.+++..-...+.++++. .|+.. -++ |. ..
T Consensus 87 ~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp------------------pGK---------Pe-----~~- 133 (213)
T COG3571 87 AEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP------------------PGK---------PE-----QL- 133 (213)
T ss_pred cCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC------------------CCC---------cc-----cc-
Confidence 5678999999999999999987543336666543 23210 011 10 00
Q ss_pred hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChHHHHHHHH
Q 004141 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDFESFLNIG 763 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~~~~~~i~ 763 (771)
-..++..+++|+||.+|+.|++-..++...+ .| ..+++++++.++.|.+-- ..+.....+++.
T Consensus 134 ---Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~y--~l---s~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va 205 (213)
T COG3571 134 ---RTEHLTGLKTPTLITQGTRDEFGTRDEVAGY--AL---SDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVA 205 (213)
T ss_pred ---hhhhccCCCCCeEEeecccccccCHHHHHhh--hc---CCceEEEEeccCccccccccccccccHHHHHHHHHHHHH
Confidence 1256788999999999999999865554211 12 246899999999997542 112223345677
Q ss_pred HHHHH
Q 004141 764 LWFKK 768 (771)
Q Consensus 764 ~fl~~ 768 (771)
.|..+
T Consensus 206 ~~~~~ 210 (213)
T COG3571 206 GWARR 210 (213)
T ss_pred HHHhh
Confidence 77654
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.7e-08 Score=91.95 Aligned_cols=262 Identities=14% Similarity=0.159 Sum_probs=160.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+-+...-||+|+++|+-.+..+ .+++|+ ..+....+.++.. |...-+|||.|+.+|...-+..=
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s~---------WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPSS---------WVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCce---------eEEEEEECCCCCeEEecCcCcee
Confidence 4477899999999998776655 677883 3444555555332 34688999999999886533211
Q ss_pred CCCCccCCC------CCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-
Q 004141 177 SKPTFSLGS------TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP- 249 (771)
Q Consensus 177 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp- 249 (771)
..+.... .+..+....+..|..-..|..| +..+++.++....+||+++|+....- ......+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f-~GH~gDV~slsl~p~ 197 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVF-HGHTGDVMSLSLSPS 197 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEe-cCCcccEEEEecCCC
Confidence 0111110 0111223344555544456665 78888899999999999999876662 33344678889999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
|++. .+-.+ | +..-+++|+ ..+. .+....+...+.+++|-|+|
T Consensus 198 ~~nt----FvSg~------------c---D~~aklWD~-----------------R~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 198 DGNT----FVSGG------------C---DKSAKLWDV-----------------RSGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCe----EEecc------------c---ccceeeeec-----------------cCcceeEeecccccccceEEEccCC
Confidence 8887 44333 1 124556665 3344 45566677779999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
..++.-+.+. ...++|+..+....+-+... .. ..+.++.||.-|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~-----------~~------~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDS-----------II------CGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCc-----------cc------CCceeEEEccccc-EEEeee
Confidence 9776655442 25566777655433222110 01 1367889999998 445544
Q ss_pred eCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCC
Q 004141 409 WGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGD 445 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~ 445 (771)
.+.+..+| |.-.++..-+ .....-++-...+|||-
T Consensus 293 ~d~~c~vW--Dtlk~e~vg~L~GHeNRvScl~~s~DG~ 328 (343)
T KOG0286|consen 293 DDFTCNVW--DTLKGERVGVLAGHENRVSCLGVSPDGM 328 (343)
T ss_pred cCCceeEe--eccccceEEEeeccCCeeEEEEECCCCc
Confidence 44444444 6555555443 43333455567777774
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-08 Score=96.20 Aligned_cols=165 Identities=16% Similarity=0.233 Sum_probs=101.7
Q ss_pred ceEEEeCCCCCeEEEEecCC--C------CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 101 ASAVVPSPSGSKLLVVRNPE--N------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....|+|+|+.|++..... . +...+|.+...+.....+.+... + .+..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~--~------~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKE--G------PIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCC--C------ceEEEEECcCCCEEEEEEc
Confidence 55678999999999977631 1 23456666533333444443221 1 1269999999999988743
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+.++|+.+..+..+ . ......+.|||+|+
T Consensus 80 ~------------------------------------------~~~~v~lyd~~~~~i~~~---~-~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 S------------------------------------------MPAKVTLYDVKGKKIFSF---G-TQPRNTISWSPDGR 113 (194)
T ss_pred c------------------------------------------CCcccEEEcCcccEeEee---c-CCCceEEEECCCCC
Confidence 1 123677788765444444 2 23456789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+.. +..+.|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887621 23347888887 4333222222 22367899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
....... ....+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8775421 12234456666654
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-09 Score=110.72 Aligned_cols=190 Identities=19% Similarity=0.223 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCC-CCC---C--Chhh-hhc-------------CCCCccc
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG-SLG---F--GEEA-LQS-------------LPGKVGS 594 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG-~~~---~--g~~~-~~~-------------~~~~~~~ 594 (771)
.++|+|||-||-++. ...|...+..||++||+|++++.|- +.. + .... ... .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 679999999996665 4568899999999999999999993 321 0 1110 000 0000000
Q ss_pred -----------cchhhHHHHHHHHHH--c------------------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 595 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 595 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
.-..|+..+++.|.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 113456666666643 1 225678999999999999999888774 67999
Q ss_pred EEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 644 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
+|+..|.. + |... .....++.|+|+|+.+. ..-....
T Consensus 255 ~I~LD~W~---------------~---------------Pl~~-----------~~~~~i~~P~L~InSe~--f~~~~~~ 291 (379)
T PF03403_consen 255 GILLDPWM---------------F---------------PLGD-----------EIYSKIPQPLLFINSES--FQWWENI 291 (379)
T ss_dssp EEEES------------------T---------------TS-G-----------GGGGG--S-EEEEEETT--T--HHHH
T ss_pred EEEeCCcc---------------c---------------CCCc-----------ccccCCCCCEEEEECcc--cCChhhH
Confidence 99877642 1 0000 01134678999998875 2222222
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCC------CC------------CC----hHHHHHHHHHHHHHhhC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIE------RP------------QS----DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~------~~------------~~----~~~~~~~i~~fl~~~L~ 771 (771)
..+.+ +...+....++.+.|..|.-. .+ .. .....+.+++||++||+
T Consensus 292 ~~~~~-~~~~~~~~~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 292 FRMKK-VISNNKESRMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp HHHHT-T--TTS-EEEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHH-HhccCCCcEEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 22222 333445678899999999421 11 01 12234568899999974
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.9e-08 Score=99.00 Aligned_cols=282 Identities=13% Similarity=0.103 Sum_probs=153.1
Q ss_pred echhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe
Q 004141 62 QPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH 140 (771)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~ 140 (771)
..-+.++...+.+..||++.=....+-+ ..-.|++...+...+|||.|.+|+.++. +.|.-+++ ++-.......
T Consensus 179 GaR~~sGs~Dy~v~~wDf~gMdas~~~f-r~l~P~E~h~i~sl~ys~Tg~~iLvvsg----~aqakl~DRdG~~~~e~~K 253 (641)
T KOG0772|consen 179 GARFVSGSLDYTVKFWDFQGMDASMRSF-RQLQPCETHQINSLQYSVTGDQILVVSG----SAQAKLLDRDGFEIVEFSK 253 (641)
T ss_pred CceeeeccccceEEEEecccccccchhh-hccCcccccccceeeecCCCCeEEEEec----CcceeEEccCCceeeeeec
Confidence 3345566777888888875443322211 1224566677899999999999999864 33555555 3322222221
Q ss_pred cCCcccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccC
Q 004141 141 VPQTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 217 (771)
Q Consensus 141 ~~~~~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~ 217 (771)
....+..-..+-| .+.+-+|.|+.+-.+..+.. .
T Consensus 254 GDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~-------------------------------------------D 290 (641)
T KOG0772|consen 254 GDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY-------------------------------------------D 290 (641)
T ss_pred cchhhhhhhccCCceeeeeccccccCcccceEEecC-------------------------------------------C
Confidence 1111100000001 22467899998876654322 2
Q ss_pred ceEEEEEccCCc--eeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 218 PSLFVININSGE--VQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~~~--~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..|.+||++.-+ .+.+. .-.....+..-+|+|||+. |+.. |.+...++|...-
T Consensus 291 gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAag-------------c~DGSIQ~W~~~~----- 348 (641)
T KOG0772|consen 291 GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAG-------------CLDGSIQIWDKGS----- 348 (641)
T ss_pred CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhc-------------ccCCceeeeecCC-----
Confidence 456666665432 22221 0112335667899999998 7654 4444344444310
Q ss_pred hhhhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccc
Q 004141 293 EASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~ 367 (771)
-+..+ +.-......+.+.+||+||++|+-.+.++ .|.+||+..-+. ...-.+
T Consensus 349 ------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 349 ------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred ------------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeeccccccchhhhcC
Confidence 11111 11112223588999999999998666554 488888865332 111111
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee---CCeeEEEEEECCCCc-EEEecCCCCCceeeEEeec
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW---GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~---~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~d 443 (771)
. ...|+ -...+||||.+.|+--++. .....|+.+|..+-+ +.+|......+....|-|.
T Consensus 406 L-----------~t~~~------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 406 L-----------PTPFP------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred C-----------CccCC------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 1 12233 2578999999855443331 123368888876644 3344444444556677777
Q ss_pred CCEEEEEEeC
Q 004141 444 GDNIIAVSSS 453 (771)
Q Consensus 444 g~~l~~~~~~ 453 (771)
=++|++.+.+
T Consensus 469 LNQi~~gsgd 478 (641)
T KOG0772|consen 469 LNQIFAGSGD 478 (641)
T ss_pred hhheeeecCC
Confidence 7777665544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-08 Score=110.46 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=112.5
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...+..||||+++||+....... .....+||+.+. ++..+.+
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l- 393 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV- 393 (591)
T ss_pred cccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee-
Confidence 36899999999999987532110 113479999997 4445677
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.+. ....+.|||||+. |+|++... ++.+........+||.+++ ++++.++ .
T Consensus 394 -t~g~-~~t~PsWspDG~~----lw~v~dg~---~~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~ 445 (591)
T PRK13616 394 -LEGH-SLTRPSWSLDADA----VWVVVDGN---TVVRVIRDPATGQLARTPV-----------------DASAVAS--R 445 (591)
T ss_pred -ecCC-CCCCceECCCCCc----eEEEecCc---ceEEEeccCCCceEEEEec-----------------cCchhhh--c
Confidence 4444 3789999999999 99987421 1222222224468999988 6676655 3
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCcccccccee---eecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
..+.+.+++|||||++|+|+... +|++ .....|. ..++.-. .+.. . .....
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~~-~l~~--------~----l~~~~ 499 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNPR-EVGP--------G----LGDTA 499 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeecccE-Eeec--------c----cCCcc
Confidence 34568999999999999999821 4666 3333333 3332111 1100 0 00113
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.++.|..|++ |+... ......+|.+++++...+.
T Consensus 500 ~~l~W~~~~~-L~V~~-~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 500 VSLDWRTGDS-LVVGR-SDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred ccceEecCCE-EEEEe-cCCCCceEEEecCCccccc
Confidence 4678999998 54443 3455668999997555443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.1e-08 Score=97.95 Aligned_cols=269 Identities=14% Similarity=0.168 Sum_probs=146.9
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..+++|+.+++... .+.+.++++.... ....+... ........|+|+++.+++....+ .+
T Consensus 16 ~~~~~~~~l~~~~~---------~g~i~i~~~~~~~-~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~~~-----~i 75 (289)
T cd00200 16 AFSPDGKLLATGSG---------DGTIKVWDLETGE-LLRTLKGH-----TGPVRDVAASADGTYLASGSSDK-----TI 75 (289)
T ss_pred EEcCCCCEEEEeec---------CcEEEEEEeeCCC-cEEEEecC-----CcceeEEEECCCCCEEEEEcCCC-----eE
Confidence 34668888777542 3466666664332 11222211 13456889999998888765432 33
Q ss_pred EEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 128 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.+| ..++.......... .+..+.|+|+++.|+........ ..|+............+........|.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~---------~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 76 RLWDLETGECVRTLTGHTS---------YVSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred EEEEcCcccceEEEeccCC---------cEEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEEc
Confidence 344 22222222221111 12689999997766555423321 122221111111111222233455566
Q ss_pred CCcCcccCCcc-CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 206 EDWGETYAGKR-QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~-~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
++ +..+.... ...|++||+.+++..... ......+..+.|+|+++. |++.+. ...|.+
T Consensus 145 ~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~i 203 (289)
T cd00200 145 PD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIKL 203 (289)
T ss_pred Cc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEEE
Confidence 66 33343333 788999999876654441 223346788999999987 877762 336888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+|+ ..++. ..+......+....|+|+++.++..+.+ ..|+++++.+++...
T Consensus 204 ~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~~ 255 (289)
T cd00200 204 WDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECVQ 255 (289)
T ss_pred EEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeEE
Confidence 887 44433 3333455578889999997765544422 358888887644321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.... ....+..+.|+++++.|+ +...++...+|
T Consensus 256 ~~~~-------------------~~~~i~~~~~~~~~~~l~-~~~~d~~i~iw 288 (289)
T cd00200 256 TLSG-------------------HTNSVTSLAWSPDGKRLA-SGSADGTIRIW 288 (289)
T ss_pred Eccc-------------------cCCcEEEEEECCCCCEEE-EecCCCeEEec
Confidence 1110 001245678999988654 44455555554
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.8e-08 Score=92.46 Aligned_cols=106 Identities=22% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
.+.+..+||-+||.|++ ...|......|.+.|++++.+||+| +|..... + -....-.+-...++.+.++-.
T Consensus 31 ~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PG---f~~t~~~--~--~~~~~n~er~~~~~~ll~~l~ 101 (297)
T PF06342_consen 31 SGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPG---FGFTPGY--P--DQQYTNEERQNFVNALLDELG 101 (297)
T ss_pred CCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCC---CCCCCCC--c--ccccChHHHHHHHHHHHHHcC
Confidence 34456799999999987 5578888899999999999999999 4332110 0 011123444555666666655
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
++ +++.++|||.|+-.|+.++..+| ..++++++|.
T Consensus 102 i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 102 IK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred CC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 55 78999999999999999999886 4577777764
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=111.59 Aligned_cols=133 Identities=23% Similarity=0.259 Sum_probs=91.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCC-CCCCCCh-hhhhcCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGE-EALQSLPG 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vv~~d~r-G~~~~g~-~~~~~~~~ 590 (771)
+.|.+-| .++.|. .+.++.|+|||+|||.+..+.. .....-..|+++| ++|+.+||| |.-||=. +.......
T Consensus 76 sEDCL~L--NIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~~~~~ 151 (491)
T COG2272 76 SEDCLYL--NIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLDTEDA 151 (491)
T ss_pred cccceeE--EeeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcccccc
Confidence 4455444 577887 3567799999999988765443 2223456788888 999999999 3323211 11110011
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccc
Q 004141 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 652 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~ 652 (771)
.....-+.|++.+++|+.++ ..-|+++|.|+|+|.||+.++.+++- |. +|+.+|+.||.+.
T Consensus 152 ~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 152 FASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 11123478999999999876 34799999999999999999988764 43 6777787777653
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-07 Score=86.95 Aligned_cols=228 Identities=14% Similarity=0.192 Sum_probs=130.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|+|-..-+.++...+ + -..+| ..++....+....+. -.+.|||||+++++...
T Consensus 66 svdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~k----- 126 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNK----- 126 (313)
T ss_pred chhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecC-----
Confidence 355677877665554443322 2 33444 234444444432222 28899999999999633
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
...|-.+|..+-++..- .+-........|+-++.
T Consensus 127 ---------------------------------------dD~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd----- 160 (313)
T KOG1407|consen 127 ---------------------------------------DDRITFIDARTYKIVNE--EQFKFEVNEISWNNSND----- 160 (313)
T ss_pred ---------------------------------------cccEEEEEecccceeeh--hcccceeeeeeecCCCC-----
Confidence 35677777766554443 23344566788996655
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+.|..+ ..+.|-++..+ .-.....|..+...+....|+|||+++|..+.+
T Consensus 161 ~Fflt~--------------GlG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 161 LFFLTN--------------GLGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred EEEEec--------------CCceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 777663 22344444431 223445566677778889999999999877765
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .+-+||++ +...+ ..|+. ....+..++||-||++| .+.+.+.-..|.
T Consensus 211 A-----------lvSLWD~~--ELiC~----------------R~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA- 258 (313)
T KOG1407|consen 211 A-----------LVSLWDVD--ELICE----------------RCISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA- 258 (313)
T ss_pred c-----------eeeccChh--Hhhhh----------------eeecc-ccCceEEEEeccCccee-eccCccceEEeE-
Confidence 3 23445543 22111 00110 01135678899999966 454444444454
Q ss_pred EECCCCc-EEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004141 418 VNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 418 ~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
+..||. +..|.-... .....|-|....|+|+++..+.
T Consensus 259 -~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 -EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred -ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 445664 445544333 3446788887778887766655
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-09 Score=103.36 Aligned_cols=120 Identities=22% Similarity=0.291 Sum_probs=85.1
Q ss_pred CceEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC---
Q 004141 518 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--- 591 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~---~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~--- 591 (771)
+.++...++.|..... ..+.|+|++-||.+.. ...|...++.+++.||.|..++.+|+..-+.......+..
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667787765321 2478999999995544 5678889999999999999999998653222211111111
Q ss_pred -ccccchhhHHHHHHHHHHc---C----CCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 592 -VGSQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~---~----~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
.......|+...+++|.+. + .+|..+|+++|||+||+.++.++.-+.+
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 1112367888888888776 4 3789999999999999999998875443
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-07 Score=86.10 Aligned_cols=227 Identities=16% Similarity=0.237 Sum_probs=132.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||.|++||..+... ...+| +. ++..-+..+ .+... ...+++||++|.+||.-+.+
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~-----t~~Iw~k~~~efecv~~l-EGHEn------EVK~Vaws~sG~~LATCSRD--- 126 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDA-----TVVIWKKEDGEFECVATL-EGHEN------EVKCVAWSASGNYLATCSRD--- 126 (312)
T ss_pred heeeeeeecCCCcEEEEeeccc-----eEEEeecCCCceeEEeee-ecccc------ceeEEEEcCCCCEEEEeeCC---
Confidence 4588999999999999887764 55666 32 232222222 11111 12599999999999986543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg~ 252 (771)
..+|+|.++.+.. -.| .+..-.+..+.|.|--.
T Consensus 127 -----------------------------------------KSVWiWe~deddEfec~aVL--~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 127 -----------------------------------------KSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWHPTED 163 (312)
T ss_pred -----------------------------------------CeEEEEEecCCCcEEEEeee--ccccccccEEEEcCCcc
Confidence 4678888765432 223 34445678899999765
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
|+|+.. ++....+|.-+.+ +. .-...|..+...+.+..|.|.|.+|
T Consensus 164 -----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl 210 (312)
T KOG0645|consen 164 -----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNIGSRL 210 (312)
T ss_pred -----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCCCceE
Confidence 666541 2222234443321 11 1245677777789999999999999
Q ss_pred EEEecCCCCCCC------CccccccceeeecCCCCCCCCccceeeEEecccccCC---CCC------cccccCCCCCCcc
Q 004141 332 VFLSAKSSVDSG------AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---DCF------PGLYSSSILSNPW 396 (771)
Q Consensus 332 ~f~~~~~~~~~g------~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~f------~g~~~~~~~~~~~ 396 (771)
+-.+.+..+..- ++.....||.+.|.++ . ..+.+.+..+.+++.... ..+ .+.+...+.++.|
T Consensus 211 ~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~-~-IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w 288 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNG-V-IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQW 288 (312)
T ss_pred EEecCCcceEeeeeccCcchhcccceEeeeeccc-c-eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEE
Confidence 988877543210 0011134554544411 1 112222333333332211 111 1123345778899
Q ss_pred ccCCCEEEEEeeeCCeeEEEEE
Q 004141 397 LSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|..+-++++...+|..++|.+
T Consensus 289 ~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 289 NPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cCCCCCceeecCCCceEEEEEe
Confidence 9976667777777788788765
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-07 Score=87.69 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=135.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....||+||..++..++.+ .-++|.. ..+...+.+.. .-++ ....|......+++.+......
T Consensus 15 ~~i~sl~fs~~G~~litss~dD--sl~LYd~-~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD--SLRLYDS-LSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC--eEEEEEc-CCCceeeEeecccccc----------cEEEEecCCceEEEccCCCCCc
Confidence 4578899999999998754432 2333322 34444444443 2244 3667777777787777633222
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-.+....+.+-.+-...+..-.....-+|-...-+.+..+..|.+||+...+.+-+ .... ...-+++.|.|
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~-~~pi~AfDp~G------ 152 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS-GRPIAAFDPEG------ 152 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC-CCcceeECCCC------
Confidence 12222222221122222222222333333322233444567999999987766555 2211 22346889988
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecC-CCCccccceeecCCCCEEEEE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+.-- ....|.++|+-.. +.|.- -.++ ..........||||||.|+..
T Consensus 153 LifA~~~-------------~~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls 205 (311)
T KOG1446|consen 153 LIFALAN-------------GSELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS 205 (311)
T ss_pred cEEEEec-------------CCCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEEEE
Confidence 5555411 1114566665210 22322 2233 223346778999999999876
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
.+. ..++++|.-+|..+.--+.. +....+ ..+.+|+|||+.| ++.+.++...
T Consensus 206 T~~-----------s~~~~lDAf~G~~~~tfs~~---------~~~~~~-------~~~a~ftPds~Fv-l~gs~dg~i~ 257 (311)
T KOG1446|consen 206 TNA-----------SFIYLLDAFDGTVKSTFSGY---------PNAGNL-------PLSATFTPDSKFV-LSGSDDGTIH 257 (311)
T ss_pred eCC-----------CcEEEEEccCCcEeeeEeec---------cCCCCc-------ceeEEECCCCcEE-EEecCCCcEE
Confidence 654 35889987776632211110 001111 1367899999955 5555555555
Q ss_pred EEEEECCCCcEEEecCC
Q 004141 415 IISVNVSSGELLRITPA 431 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~ 431 (771)
+| ++++|+....+.+
T Consensus 258 vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 258 VW--NLETGKKVAVLRG 272 (311)
T ss_pred EE--EcCCCcEeeEecC
Confidence 55 6678876655544
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-08 Score=90.20 Aligned_cols=188 Identities=21% Similarity=0.257 Sum_probs=117.5
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-----CCCC-CChhhhhcCC-CCccccchhh---HHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-----GSLG-FGEEALQSLP-GKVGSQDVND---VLTAIDH 606 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~r-----G~~~-~g~~~~~~~~-~~~~~~~~~D---~~~~i~~ 606 (771)
..+||++||-+.+ ...+...+.-+.-.....++|.-+ ..++ .+..|..... ...+..+.+. ....+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 234444444344455556666421 1111 1112211110 0011112222 2233444
Q ss_pred HHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCC
Q 004141 607 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 607 l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
|+++ ..++.+||++-|.|+||.++++.+..++..+.+++..++...... ...+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----~~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----IGLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch----hhccCC-----------------c
Confidence 4432 347899999999999999999999988776666666655432110 000111 0
Q ss_pred ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 684 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
+. .+ .+|++..||+.|++||..-+....+.|+..+.++++..|++.+|... .+-+..+.
T Consensus 140 ------------~~--~~--~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~-----~~e~~~~~ 198 (206)
T KOG2112|consen 140 ------------PG--VN--YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTS-----PQELDDLK 198 (206)
T ss_pred ------------cc--cC--cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCcccccc-----HHHHHHHH
Confidence 00 00 57999999999999999999999999999999999999999999775 45678888
Q ss_pred HHHHH
Q 004141 764 LWFKK 768 (771)
Q Consensus 764 ~fl~~ 768 (771)
.|+++
T Consensus 199 ~~~~~ 203 (206)
T KOG2112|consen 199 SWIKT 203 (206)
T ss_pred HHHHH
Confidence 88876
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-08 Score=94.39 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC--C
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--L 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~ 612 (771)
.+..++.+.|-|+... .|..+...|.. -+.++.+.|+|.+ .. .+.....|+...++.+.... .
T Consensus 6 ~~~~L~cfP~AGGsa~---~fr~W~~~lp~-~iel~avqlPGR~---~r--------~~ep~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 6 ARLRLFCFPHAGGSAS---LFRSWSRRLPA-DIELLAVQLPGRG---DR--------FGEPLLTDIESLADELANELLPP 70 (244)
T ss_pred CCceEEEecCCCCCHH---HHHHHHhhCCc-hhheeeecCCCcc---cc--------cCCcccccHHHHHHHHHHHhccc
Confidence 3444566666655443 34444444422 4889999999943 22 22223556666666555532 1
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEe---cCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCC--
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-- 684 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 684 (771)
.-...++++||||||.+|..+|.+... ...++.+ .+|..+ .........+-.+...+ ..+.+.+.
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~--~~~~i~~~~D~~~l~~l-----~~lgG~p~e~ 143 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYD--RGKQIHHLDDADFLADL-----VDLGGTPPEL 143 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCc--ccCCccCCCHHHHHHHH-----HHhCCCChHH
Confidence 233579999999999999999875311 1222222 223111 11111111111111111 11222221
Q ss_pred hhhHHHHhhcCcc-----------cc--cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 685 VEDLTRFHSKSPI-----------SH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 685 ~~~~~~~~~~sp~-----------~~--~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.++.+.+.-.-|+ .+ -..+.+|+.++.|++|..|..++...+.+..+. ..++.+++| ||.+..
T Consensus 144 led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~ 219 (244)
T COG3208 144 LEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN 219 (244)
T ss_pred hcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh
Confidence 1222222211121 11 135789999999999999987776666665543 589999976 898763
Q ss_pred CCChHHHHHHHHHHH
Q 004141 752 PQSDFESFLNIGLWF 766 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl 766 (771)
.. ..++...+.+.+
T Consensus 220 ~~-~~~v~~~i~~~l 233 (244)
T COG3208 220 QQ-REEVLARLEQHL 233 (244)
T ss_pred hh-HHHHHHHHHHHh
Confidence 32 224444444443
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-08 Score=95.33 Aligned_cols=208 Identities=13% Similarity=0.038 Sum_probs=122.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC----cEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
....+|.|+++.+..++|+++++||--+.... ......+.|.+.| ..+|.+|+--... -++..+ .. ..-
T Consensus 82 ~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g-~i~~~~dsli~~g~i~pai~vgid~~d~~~----R~~~~~-~n-~~~ 154 (299)
T COG2382 82 RRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSG-RIPRILDSLIAAGEIPPAILVGIDYIDVKK----RREELH-CN-EAY 154 (299)
T ss_pred eeEEEEeCCCCCccccccEEEEeccHHHHhcC-ChHHHHHHHHHcCCCCCceEEecCCCCHHH----HHHHhc-cc-HHH
Confidence 55678889999888999999999994332211 2233455555554 6788888643111 111111 10 001
Q ss_pred hhhHH-HHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 597 VNDVL-TAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 597 ~~D~~-~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
...+. +.+-++.+... -+.++-+|+|.|+||.++++.+.++|+.|..++..+|.+........
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~~-------------- 220 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDTQ-------------- 220 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCccccc--------------
Confidence 12222 22334444432 35677899999999999999999999999999999998653311100
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
+..+... ..+-.........-++...++.+.++ ...+++++.|+..|.+..+..|+| ||...
T Consensus 221 ---------~~~~~~~---~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gHdw~--- 282 (299)
T COG2382 221 ---------PQGEVAE---SLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GHDWA--- 282 (299)
T ss_pred ---------cccchhh---hhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CCchh---
Confidence 0000001 01111111122222333444444455 456789999999999999999998 99653
Q ss_pred ChHHHHHHHHHHHHHhh
Q 004141 754 SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L 770 (771)
.+-..+.++|...+
T Consensus 283 ---~Wr~~l~~~L~~l~ 296 (299)
T COG2382 283 ---WWRPALAEGLQLLL 296 (299)
T ss_pred ---HhHHHHHHHHHHhh
Confidence 34445666665543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.7e-08 Score=104.62 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=149.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
...+...+|||||+.++-.+.+. .+.+|+- +...+.+. ....+ .+++|+|+|+.|+..+.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~gH~~~v----------~~~~f~p~g~~i~Sgs~D 267 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLKGHSTYV----------TSVAFSPDGNLLVSGSDD 267 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEecCCCCce----------EEEEecCCCCEEEEecCC
Confidence 35688999999999887655443 4455532 22223332 12223 699999999888888777
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCC-ccceEEEec
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSL-SVGQVVWAP 249 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~-~~~~~~wsp 249 (771)
...+ .|+.........+..+........|.+|....+++..+..|.+||+.++..+ .+.+ .... .+..+.|||
T Consensus 268 ~tvr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp 344 (456)
T KOG0266|consen 268 GTVR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSP 344 (456)
T ss_pred CcEE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECC
Confidence 7655 5655444555556666666667789999888888878899999999999832 3311 1111 468899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCc---cccceeec
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESIS---SAFFPRFS 325 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~---~~~~p~~S 325 (771)
+|+. |+... .+..|-.+|+ ..+ .....+.+.. ...++..+
T Consensus 345 ~~~~----ll~~~---------------~d~~~~~w~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 345 NGKY----LLSAS---------------LDRTLKLWDL-----------------RSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CCcE----EEEec---------------CCCeEEEEEc-----------------cCCcceeeecccCCcceeEeccccc
Confidence 9997 76654 2225666666 323 2233333222 45677779
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
++|+.|+-.+.+ ..|+++|..++...+...+.. ...+....|++....+..
T Consensus 389 ~~~~~i~sg~~d-----------~~v~~~~~~s~~~~~~l~~h~------------------~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 389 TGGKLIYSGSED-----------GSVYVWDSSSGGILQRLEGHS------------------KAAVSDLSSHPTENLIAS 439 (456)
T ss_pred CCCCeEEEEeCC-----------ceEEEEeCCccchhhhhcCCC------------------CCceeccccCCCcCeeee
Confidence 999988766655 348999988766544332220 012456678888875544
Q ss_pred Eee-eCCeeEEEEE
Q 004141 406 SSI-WGSSQVIISV 418 (771)
Q Consensus 406 ~~~-~~~~~~l~~~ 418 (771)
.+. .+....+|..
T Consensus 440 ~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 440 SSFEGDGLIRLWKY 453 (456)
T ss_pred cCcCCCceEEEecC
Confidence 332 2344455544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-07 Score=95.30 Aligned_cols=263 Identities=15% Similarity=0.102 Sum_probs=130.0
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....+||||++++. .+++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv-~~rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYV-ANRD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEE-EETT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEE-EcCC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 44679999999755 4443 2 466666 455555555654444 489999999988665332
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC------CCCccceEEEecCCCCC
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP------KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~------~~~~~~~~~wspDg~~~ 254 (771)
.+.+.++|.++.++.....+. ....+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 368899998887765431011 1123345566777775
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
.++.-. ...+||.+|.. +.... ..............|+|||++++-
T Consensus 142 ---fVv~lk--------------d~~~I~vVdy~----------------d~~~~~~~~i~~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 142 ---FVVNLK--------------DTGEIWVVDYS----------------DPKNLKVTTIKVGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp ---EEEEET--------------TTTEEEEEETT----------------TSSCEEEEEEE--TTEEEEEE-TTSSEEEE
T ss_pred ---EEEEEc--------------cCCeEEEEEec----------------cccccceeeecccccccccccCcccceeee
Confidence 555432 33489999972 21111 111122233556799999998765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCcccee---------eE----EecccccCCCCCc--c----------ccc
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV---------DV----IPVVQCAEGDCFP--G----------LYS 388 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~f~--g----------~~~ 388 (771)
..+. ...|-++|.++++...+..... -+ -.+|.......|. . .+.
T Consensus 189 a~~~----------sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~ 258 (369)
T PF02239_consen 189 AANG----------SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA 258 (369)
T ss_dssp EEGG----------GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred cccc----------cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence 4433 2355566655543321100000 00 0001000000000 0 000
Q ss_pred ---------C-CCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEE-EecCCCC-CceeeEEeecCCEEEEEEeCCC
Q 004141 389 ---------S-SILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 389 ---------~-~~~~~~~s~Dg~~l~~~~~-~~~~~~l~~~d~~tg~~~-~l~~~~~-~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
. ..-.+..+||+++|++... ......|..+|.++.++. .+....+ ......|++||++++++.-..+
T Consensus 259 wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 259 WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 0 1123345899999988732 233567999999887654 3432222 2456789999999999876655
Q ss_pred CCCeEEEEEecc
Q 004141 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
. .|.++|..+
T Consensus 339 ~--~i~v~D~~T 348 (369)
T PF02239_consen 339 G--AIVVYDAKT 348 (369)
T ss_dssp T--EEEEEETTT
T ss_pred C--EEEEEECCC
Confidence 5 788887543
|
... |
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-08 Score=104.85 Aligned_cols=211 Identities=15% Similarity=0.175 Sum_probs=121.5
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc-
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~- 596 (771)
++-+.|.|... ...+.| ||+++..-...+ ...-..++++|.++||.|+++|.+..+. + ...++..+
T Consensus 201 ~eLiqY~P~te-~v~~~P-LLIVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~nP~~---~-----~r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPITE-QQHARP-LLVVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRNPDK---A-----HREWGLSTY 270 (560)
T ss_pred eEEEEeCCCCC-CcCCCc-EEEechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCCCCh---h-----hcCCCHHHH
Confidence 45567777531 122344 666666332211 1122457899999999999999987322 1 11222222
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH----HHhhCCC-ceeEEEecCCccchhhh---------------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNLALM--------------- 656 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~----~a~~~p~-~~~~~v~~~p~~~~~~~--------------- 656 (771)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++....+|+..-
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~ 348 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAA 348 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHH
Confidence 34566777777665 34678999999999999997 6777785 79998877766664210
Q ss_pred ----hcCCCCCcchhhhhccC---------CCCccC-C-CCCC-------------------hhhHHHHhhcCcc-----
Q 004141 657 ----VGTTDIPDWCYVESYGS---------KGKDSF-T-ESPS-------------------VEDLTRFHSKSPI----- 697 (771)
Q Consensus 657 ----~~~~~~~~~~~~~~~~~---------~~~~~~-~-~~~~-------------------~~~~~~~~~~sp~----- 697 (771)
.....++.+.+...|.. .....+ . ..+. .+... ++..+.+
T Consensus 349 e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~~fdll~Wn~D~t~lPg~~~~e~l~-ly~~N~L~~pG~ 427 (560)
T TIGR01839 349 KRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPPAFDILYWNNDTTRLPAAFHGDLLD-MFKSNPLTRPDA 427 (560)
T ss_pred HHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcchhhHHHHhCcCccchHHHHHHHHH-HHhcCCCCCCCC
Confidence 00001111100000000 000000 0 0000 01111 2222222
Q ss_pred -------cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 698 -------SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 698 -------~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
-.+.+|++|+|++.|+.|-++|++.+..+.+.+. .+++++..+ +||.
T Consensus 428 l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l~g---s~~~fvl~~-gGHI 481 (560)
T TIGR01839 428 LEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALLLG---GKRRFVLSN-SGHI 481 (560)
T ss_pred EEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHHcC---CCeEEEecC-CCcc
Confidence 1367889999999999999999999988877663 358888885 5884
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.8e-07 Score=98.95 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=103.4
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|++.. +++++- .+..|.++|+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-- 155 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-- 155 (493)
T ss_pred CEEEEEecCCCccccccCcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC--
Confidence 567788876542 2233 233456788999999865 655541 2336888887
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.+++ ...+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++........
T Consensus 156 ---------------~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D-----------g~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 156 ---------------ERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD-----------KKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred ---------------CCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC-----------CEEEEEECCCCcEEEEEecC
Confidence 4444 34555566678999999999988776654 35889998775531100000
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc--EEEecCCC-CCceeeEEeecC
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE--LLRITPAE-SNFSWSLLTLDG 444 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~--~~~l~~~~-~~~~~~~~s~dg 444 (771)
. . .......|.+++..|+..... .....+..+|+.+.. ...+.... .....+.|++++
T Consensus 210 ----------~-~-------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 210 ----------A-S-------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred ----------C-C-------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 0 0 011245688888766543321 122345555765432 22222121 223445688888
Q ss_pred CEEEEEEeCCCCCCeEEEEEeccc
Q 004141 445 DNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 445 ~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+.++....+. ..|.+.++.++
T Consensus 272 ~~L~lggkgD---g~Iriwdl~~~ 292 (493)
T PTZ00421 272 NLLYIGSKGE---GNIRCFELMNE 292 (493)
T ss_pred CEEEEEEeCC---CeEEEEEeeCC
Confidence 8776654322 34666666543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.7e-07 Score=84.29 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=149.3
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC--CccCCCCCC
Q 004141 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS--DKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 200 (771)
+.+.+| ..|...+.++.+.. ....++.+||++.||-.+.... ..++.......+. ...+..=..
T Consensus 20 hTIRfWqa~tG~C~rTiqh~ds---------qVNrLeiTpdk~~LAaa~~qhv---RlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHPDS---------QVNRLEITPDKKDLAAAGNQHV---RLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecCcc---------ceeeEEEcCCcchhhhccCCee---EEEEccCCCCCceeEEeccCCceE
Confidence 466777 45666666654332 2369999999999988654331 1222111111111 111111112
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.+-|..|..--+++..+..+-+||+..-...++ ......+..+...|+... |+... ...
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----Lis~d---------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----LISGD---------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----EEeec---------------CCC
Confidence 344666665667777889999999988777776 555567888999998765 55432 445
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+|+++|+ ... ....+.+....+.+....|||++|+-.-+. ...|+|++-+
T Consensus 147 ~irvWDl-----------------~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----------G~cyvW~l~~ 198 (311)
T KOG0315|consen 147 NIRVWDL-----------------GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----------GNCYVWRLLN 198 (311)
T ss_pred cEEEEEc-----------------cCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-----------ccEEEEEccC
Confidence 8999998 332 233344455568999999999998866554 2488888876
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEE-ecCCCCCce
Q 004141 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLR-ITPAESNFS 436 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~-l~~~~~~~~ 436 (771)
+.... .+.++.+ |+ .....+....+|||+|+|+- .+.+....||..+ +- +++. ++....-.-
T Consensus 199 ~~~~s------~l~P~~k------~~-ah~~~il~C~lSPd~k~lat-~ssdktv~iwn~~--~~~kle~~l~gh~rWvW 262 (311)
T KOG0315|consen 199 HQTAS------ELEPVHK------FQ-AHNGHILRCLLSPDVKYLAT-CSSDKTVKIWNTD--DFFKLELVLTGHQRWVW 262 (311)
T ss_pred CCccc------cceEhhh------ee-cccceEEEEEECCCCcEEEe-ecCCceEEEEecC--CceeeEEEeecCCceEE
Confidence 43311 1222221 11 11122345668999997754 4445556666554 33 3333 333333344
Q ss_pred eeEEeecCCEEEEEEeC
Q 004141 437 WSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 437 ~~~~s~dg~~l~~~~~~ 453 (771)
...||.||.+|+...++
T Consensus 263 dc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 263 DCAFSADGEYLVTASSD 279 (311)
T ss_pred eeeeccCccEEEecCCC
Confidence 46899999988765544
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.4e-08 Score=99.03 Aligned_cols=203 Identities=17% Similarity=0.254 Sum_probs=118.9
Q ss_pred EEEEe-cCCCCCCCCCcEEEEEcCCCCCCCCCcch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 523 AIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 523 ~~~~~-P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.|++. |.... .+..|+||++|||++........ ..+..+.. ..++++.||.....- ..+......+
T Consensus 108 ~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~-------~~~~~yPtQL 178 (374)
T PF10340_consen 108 YWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSD-------EHGHKYPTQL 178 (374)
T ss_pred EEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccc-------cCCCcCchHH
Confidence 57777 65432 23459999999998764332111 11112223 569999999865300 0122334558
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCccchhhhhcCC-------CCCcc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTT-------DIPDW 665 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~~~~~~~~~~-------~~~~~ 665 (771)
.++.+..++|++.. ..++|.|+|.|+||.+++.++..- ....+.+|+++|.+++....... ...+.
T Consensus 179 ~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n~~~D~ 256 (374)
T PF10340_consen 179 RQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDNEKRDM 256 (374)
T ss_pred HHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCccccccccccc
Confidence 89999999999542 357899999999999999876521 12468999999998875211100 00000
Q ss_pred hh---hhhccCCCCccCCCC----------C--Ch-h--hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 666 CY---VESYGSKGKDSFTES----------P--SV-E--DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 666 ~~---~~~~~~~~~~~~~~~----------~--~~-~--~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
.. ...++. .|.+. + .. . +.+.|... + -+.-++++.|+++-+. .+..++.
T Consensus 257 l~~~~~~~~~~----~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I-----~--~~~~vfVi~Ge~Evfr--ddI~~~~ 323 (374)
T PF10340_consen 257 LSYKGLSMFGD----AYIGNNDPENDLNSLPFVNIEYNFDAEDWKDI-----L--KKYSVFVIYGEDEVFR--DDILEWA 323 (374)
T ss_pred cchhhHHHHHH----hhccccccccccccCCccCcccCCChhHHHHh-----c--cCCcEEEEECCccccH--HHHHHHH
Confidence 00 000100 01110 0 00 0 01111111 1 1257999999999777 7889999
Q ss_pred HHHHhCCC-----CEEEEEeCCCCccC
Q 004141 728 RALREKGV-----ETKVIVFPNDVHGI 749 (771)
Q Consensus 728 ~~l~~~g~-----~~~~~~~~~~~H~~ 749 (771)
+.+...+. ..++.+-+++.|.-
T Consensus 324 ~~~~~~~~~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 324 KKLNDVKPNKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHhhcCccccCCcceEEEecCCcccc
Confidence 99986543 36778888888954
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-09 Score=120.38 Aligned_cols=128 Identities=22% Similarity=0.224 Sum_probs=85.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~~~~~~~ 597 (771)
|..-+|.|.......+.|++|++|||++..+.. ........++..+++||.++||- .-||-.......+ .+..-+
T Consensus 109 L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~--~gN~Gl 186 (535)
T PF00135_consen 109 LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP--SGNYGL 186 (535)
T ss_dssp -EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--BSTHHH
T ss_pred HHHhhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--chhhhh
Confidence 455688998765555799999999998876655 33444566788999999999993 1111110000001 133448
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCc
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~ 650 (771)
.|...|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++.
T Consensus 187 ~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 187 LDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 8999999999886 336999999999999999999887652 3589999999884
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.8e-07 Score=96.57 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=120.2
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcc----eEEEecCCcccccccCCCcccceeecCCCC-eEEEEec
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~ 172 (771)
+.+...+||| |++.||..+... .-.+|.+..++.. ..+..+. +... .+..+.|+|++. .|+..+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg--tIkIWdi~~~~~~~~~~~~l~~L~-gH~~------~V~~l~f~P~~~~iLaSgs- 145 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG--TIMGWGIPEEGLTQNISDPIVHLQ-GHTK------KVGIVSFHPSAMNVLASAG- 145 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC--EEEEEecCCCccccccCcceEEec-CCCC------cEEEEEeCcCCCCEEEEEe-
Confidence 5688999999 888887765533 2223333222211 1111111 1111 226899999975 444432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.+..|.+||+.+++..... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 146 -------------------------------------------ADMVVNVWDVERGKAVEVI-KCHSDQITSLEWNLDGS 181 (493)
T ss_pred -------------------------------------------CCCEEEEEECCCCeEEEEE-cCCCCceEEEEEECCCC
Confidence 2367999999988755441 22344688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcc-ccceeecCCCCE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS-AFFPRFSPDGKF 330 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~-~~~p~~SpDG~~ 330 (771)
. |+..+ .+..|.++|+ .+++ ...+..+.+. .....|+|++..
T Consensus 182 l----Latgs---------------~Dg~IrIwD~-----------------rsg~~v~tl~~H~~~~~~~~~w~~~~~~ 225 (493)
T PTZ00421 182 L----LCTTS---------------KDKKLNIIDP-----------------RDGTIVSSVEAHASAKSQRCLWAKRKDL 225 (493)
T ss_pred E----EEEec---------------CCCEEEEEEC-----------------CCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence 6 66655 3347888887 4443 3344433332 346789999988
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+...... ....+|.+||+..... .+... . . ... .....+.|++|++.|+.....+
T Consensus 226 ivt~G~s~-------s~Dr~VklWDlr~~~~-p~~~~-----~---~---d~~-----~~~~~~~~d~d~~~L~lggkgD 281 (493)
T PTZ00421 226 IITLGCSK-------SQQRQIMLWDTRKMAS-PYSTV-----D---L---DQS-----SALFIPFFDEDTNLLYIGSKGE 281 (493)
T ss_pred EEEEecCC-------CCCCeEEEEeCCCCCC-ceeEe-----c---c---CCC-----CceEEEEEcCCCCEEEEEEeCC
Confidence 77555332 1235688999865332 11000 0 0 000 0122356899999776554445
Q ss_pred CeeEEEEEECCCCcEEEe
Q 004141 411 SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l 428 (771)
+...+| ++.++++...
T Consensus 282 g~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 282 GNIRCF--ELMNERLTFC 297 (493)
T ss_pred CeEEEE--EeeCCceEEE
Confidence 544455 5556665443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8e-08 Score=96.90 Aligned_cols=241 Identities=14% Similarity=0.166 Sum_probs=143.2
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|+|..++|+.. .+++++.||+.+. +..++. .+-..+........+||||++||+..+. ..|+++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~----G~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNN----GHIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccC----ceEEee
Confidence 358886666653 4568999998433 333331 1111122346678889999999987443 357766
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
. ..++........ |.+ ..+.||.||+.|+.+.
T Consensus 331 hakT~eli~s~Kie----G~v------~~~~fsSdsk~l~~~~------------------------------------- 363 (514)
T KOG2055|consen 331 HAKTKELITSFKIE----GVV------SDFTFSSDSKELLASG------------------------------------- 363 (514)
T ss_pred hhhhhhhhheeeec----cEE------eeEEEecCCcEEEEEc-------------------------------------
Confidence 6 444433333333 333 7999999998887652
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+..++|+||+....+...---.+.....+++.|++|.+ ++..+..+ +. .||..+-.
T Consensus 364 -------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~G------iV-------NIYd~~s~ 419 (514)
T KOG2055|consen 364 -------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDSG------IV-------NIYDGNSC 419 (514)
T ss_pred -------CCceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCcc------eE-------EEeccchh
Confidence 23689999998876655410233445567888999998 88766321 11 35544321
Q ss_pred cccchhhhhhhhcCCCCCCcceec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 289 LYKSEASELELKESSSEDLPVVNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
. .++.++++ ..--..+.+..|+||++.||-.++.. ...|.++-+.+-...
T Consensus 420 ~---------------~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVF--- 472 (514)
T KOG2055|consen 420 F---------------ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVF--- 472 (514)
T ss_pred h---------------ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeee---
Confidence 1 23333333 23334588999999999999888764 234555554442210
Q ss_pred cceeeEEecccccCCCCCccc--ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 366 EKIVDVIPVVQCAEGDCFPGL--YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~--~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
..||.. ....+..++|||.|.++.+ .+..++..||.+.
T Consensus 473 ---------------sNfP~~n~~vg~vtc~aFSP~sG~lAv-GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 473 ---------------SNFPTSNTKVGHVTCMAFSPNSGYLAV-GNEAGRVHLFKLH 512 (514)
T ss_pred ---------------ccCCCCCCcccceEEEEecCCCceEEe-ecCCCceeeEeec
Confidence 011110 0012457889999986654 4567788888764
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=102.09 Aligned_cols=230 Identities=18% Similarity=0.247 Sum_probs=143.5
Q ss_pred CCCcEEEEEcCCCCCCCCC---c-chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------CccccchhhHHH
Q 004141 535 SCDPLIVVLHGGPHSVSLS---S-YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQDVNDVLT 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~---~-~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~--------~~~~~~~~D~~~ 602 (771)
+++|+|++.||--.++... . -...+-.|+++||.|.+-|.|| ..|++......+. .+-+-...|+-+
T Consensus 71 ~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA 149 (403)
T KOG2624|consen 71 KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPA 149 (403)
T ss_pred CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC-cccchhhcccCCcCCcceeecchhhhhhcCHHH
Confidence 7899999999954433211 1 1224456799999999999999 4455543222211 111223679999
Q ss_pred HHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhh---------------------hhc
Q 004141 603 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLAL---------------------MVG 658 (771)
Q Consensus 603 ~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~---------------------~~~ 658 (771)
.|+++.+.- ..+++..+|||.|+.....++...|+ +++..++.+|+..+.. +++
T Consensus 150 ~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg 227 (403)
T KOG2624|consen 150 MIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFG 227 (403)
T ss_pred HHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcC
Confidence 999998873 56899999999999999988887765 6888899998773320 000
Q ss_pred CCCC-Cc-c---------hh-------------hhhccCCC-----------------------------------CccC
Q 004141 659 TTDI-PD-W---------CY-------------VESYGSKG-----------------------------------KDSF 679 (771)
Q Consensus 659 ~~~~-~~-~---------~~-------------~~~~~~~~-----------------------------------~~~~ 679 (771)
.... +. + |. ....+... .+.|
T Consensus 228 ~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~y 307 (403)
T KOG2624|consen 228 RKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNNWNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKY 307 (403)
T ss_pred CccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHhhhhcccchhhccCCCCccHHHHHHHHHHhcCCCcccc
Confidence 0000 00 0 00 00000000 0000
Q ss_pred CCCCChhhHHHHhh-cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc--CCCCCChH
Q 004141 680 TESPSVEDLTRFHS-KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQSDF 756 (771)
Q Consensus 680 ~~~~~~~~~~~~~~-~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~--~~~~~~~~ 756 (771)
.... ..+...|.+ ..|...+.++++|+.+..|..|.++.+++...+...+....+ ...+.+++-.|. +.......
T Consensus 308 D~G~-~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~ 385 (403)
T KOG2624|consen 308 DYGS-KRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKE 385 (403)
T ss_pred CCCc-cccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeeccCcHH
Confidence 0000 012222222 234566788899999999999999999999988887776544 333337777885 33455677
Q ss_pred HHHHHHHHHHHHh
Q 004141 757 ESFLNIGLWFKKY 769 (771)
Q Consensus 757 ~~~~~i~~fl~~~ 769 (771)
+++..|++.++++
T Consensus 386 ~vy~~vi~~~~~~ 398 (403)
T KOG2624|consen 386 EVYDPVIERLRLF 398 (403)
T ss_pred HHHHHHHHHHHhh
Confidence 8899999988765
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-08 Score=90.22 Aligned_cols=168 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred EEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 540 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
|+++||-.++.. ..|.... +.|... +.|-.++... .+.++....++..+.. + .+.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~~------------------P~~~~W~~~l~~~i~~--~-~~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWDN------------------PDLDEWVQALDQAIDA--I-DEPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--TS--------------------HHHHHHHHHHCCHC----TTTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccCC------------------CCHHHHHHHHHHHHhh--c-CCCe
Confidence 678899665543 4565544 455444 7776666411 1234444444433332 3 3469
Q ss_pred EEEEcChhHHHHHHHH-hhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 619 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a-~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
.++|||.|+..++.++ ......++++++.+|....... ...+ . ...+.. .|
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~---~~~~------~-----~~~f~~-------------~p- 109 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE---PFPP------E-----LDGFTP-------------LP- 109 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH---CCTC------G-----GCCCTT-------------SH-
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc---chhh------h-----cccccc-------------Cc-
Confidence 9999999999999999 6677899999999997431000 0000 0 000000 01
Q ss_pred cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 698 ~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+..|.+++.+++|+.||++.+.++.+++. .+++.++++||.... ....-+..+++.|+
T Consensus 110 --~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~-----a~~~~~~~~GHf~~~--~G~~~~p~~~~~l~ 170 (171)
T PF06821_consen 110 --RDPLPFPSIVIASDNDPYVPFERAQRLAQRLG-----AELIILGGGGHFNAA--SGFGPWPEGLDLLQ 170 (171)
T ss_dssp --CCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSSGG--GTHSS-HHHHHHHH
T ss_pred --ccccCCCeEEEEcCCCCccCHHHHHHHHHHcC-----CCeEECCCCCCcccc--cCCCchHHHHHHhc
Confidence 11233566999999999999999999999985 589999999996532 11233455555554
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.4e-08 Score=100.25 Aligned_cols=223 Identities=17% Similarity=0.147 Sum_probs=129.7
Q ss_pred CCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCC--------------CC-CCCChhhhhcCCCCccccc
Q 004141 533 DCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~r--------------G~-~~~g~~~~~~~~~~~~~~~ 596 (771)
.+++.|+++++||-..... .......-+.....|.+++++|-. |. .++-.++.+.. ...+...
T Consensus 50 m~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~-~~~~~~q 128 (316)
T COG0627 50 MGRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPP-WASGPYQ 128 (316)
T ss_pred cCCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCc-cccCccc
Confidence 4577899999999443310 111222333456778888887532 10 11111111111 0111123
Q ss_pred hhhHH-HHHH-HHHHcCCCCC--CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC---CC--Ccchh
Q 004141 597 VNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DI--PDWCY 667 (771)
Q Consensus 597 ~~D~~-~~i~-~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~---~~--~~~~~ 667 (771)
.++++ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+...+|+++........ .. .....
T Consensus 129 ~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~ 208 (316)
T COG0627 129 WETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAF 208 (316)
T ss_pred hhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccH
Confidence 34433 2222 3333333444 389999999999999999999999999999999998765332222 00 01111
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCC--------------CCCcEEEEeeCCCCccC--cHHHHHHHHHHH
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--------------VKTPTIFLLGAQDLRVP--VSNGLQYARALR 731 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--------------i~~P~lii~G~~D~~vp--~~~~~~~~~~l~ 731 (771)
...++. .. ...+.+.+|...+.+ ...++++-+|..|.+.. ....+.+.+++.
T Consensus 209 ~~~~G~---------~~---~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~ 276 (316)
T COG0627 209 NAMLGP---------DS---DPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALR 276 (316)
T ss_pred HHhcCC---------Cc---cccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHH
Confidence 111221 10 012222333322221 44678888999998874 334788999999
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+.|.+..+...++..|.... ....+...+.|+.+.|+
T Consensus 277 ~~g~~~~~~~~~~G~Hsw~~---w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 277 AAGIPNGVRDQPGGDHSWYF---WASQLADHLPWLAGALG 313 (316)
T ss_pred hcCCCceeeeCCCCCcCHHH---HHHHHHHHHHHHHHHhc
Confidence 99999998888888997642 23567788888877653
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=95.14 Aligned_cols=229 Identities=17% Similarity=0.162 Sum_probs=127.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-----hHHHHHH-------HHCCcEEEEECCCCCC-CC-ChhhhhcCC----CCcccc
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSY-----SKSLAFL-------SSVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-----~~~~~~l-------a~~G~~Vv~~d~rG~~-~~-g~~~~~~~~----~~~~~~ 595 (771)
..+..+|+++|+-.++...... ...++.| --..|-||++|.-|+. |. |.+..+..- ..+...
T Consensus 48 ~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ 127 (368)
T COG2021 48 AEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVI 127 (368)
T ss_pred ccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcc
Confidence 3566899999984432211110 0123333 3344999999998764 21 222222110 122334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---------hhhcCCCCCcc
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---------~~~~~~~~~~~ 665 (771)
.+.|...+-+.|++.-.| +++. ++|.||||+.++..+..+|+++..+|.++...... .......-|+|
T Consensus 128 ti~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~~r~s~~~ia~~~~~r~AI~~DP~~ 205 (368)
T COG2021 128 TIRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATAARLSAQNIAFNEVQRQAIEADPDW 205 (368)
T ss_pred cHHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheecccccCCHHHHHHHHHHHHHHHhCCCc
Confidence 578888888888777444 5555 99999999999999999999988777666533210 00011111222
Q ss_pred h------------------------------hhhhccCCCCccCCCC-CChhhHHHHh----------------------
Q 004141 666 C------------------------------YVESYGSKGKDSFTES-PSVEDLTRFH---------------------- 692 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~---------------------- 692 (771)
. +.+.++......-... ......+.|.
T Consensus 206 n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESYL~~qg~kf~~rfDaNsYL~lt~a 285 (368)
T COG2021 206 NGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESYLDYQGDKFVARFDANSYLYLTRA 285 (368)
T ss_pred cCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 0 0111111000000000 0000111111
Q ss_pred --hcCccc-------ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCCccCCCCCChHHHHHHH
Q 004141 693 --SKSPIS-------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDVHGIERPQSDFESFLNI 762 (771)
Q Consensus 693 --~~sp~~-------~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~H~~~~~~~~~~~~~~i 762 (771)
..++.. -+.++++|+|++.=+.|.+.|+++.+++.+.|+..+. ++++ ...||.-...+.. .+...|
T Consensus 286 ld~~D~s~~~~~l~~al~~i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i~S~~GHDaFL~e~~-~~~~~i 361 (368)
T COG2021 286 LDYHDVSRGRGDLTAALARIKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREIDSPYGHDAFLVESE-AVGPLI 361 (368)
T ss_pred HHhcCCCCCcCcHHHHHhcCccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEecCCCCchhhhcchh-hhhHHH
Confidence 112222 2677899999999999999999999999999998765 4333 3458864433322 344667
Q ss_pred HHHHHH
Q 004141 763 GLWFKK 768 (771)
Q Consensus 763 ~~fl~~ 768 (771)
..||+.
T Consensus 362 ~~fL~~ 367 (368)
T COG2021 362 RKFLAL 367 (368)
T ss_pred HHHhhc
Confidence 777653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.8e-07 Score=95.94 Aligned_cols=198 Identities=13% Similarity=0.065 Sum_probs=133.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
+.+...+||||-++|+--+++. ...+|.-.....++.-. +... +...+.|+|-|-++|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y~-GH~~------PVwdV~F~P~GyYFatas~D~tAr- 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIYK-GHLA------PVWDVQFAPRGYYFATASHDQTAR- 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEec-CCCc------ceeeEEecCCceEEEecCCCceee-
Confidence 5678889999999997665543 34556222222222221 2111 125788999997777776666543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|........+.+..+..-.+-+.|-|+-....++..+..+.+||+.+|...++- +.+...+..+++||+|++ |
T Consensus 519 -LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~----L 592 (707)
T KOG0263|consen 519 -LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY----L 592 (707)
T ss_pred -eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----E
Confidence 5654444444444455454555667777666667778889999999999877773 345567899999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+-.+ ....|-+||+ .++ ....+-.+.+.+.+..||.||..||..+.+
T Consensus 593 aSg~---------------ed~~I~iWDl-----------------~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 593 ASGD---------------EDGLIKIWDL-----------------ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred eecc---------------cCCcEEEEEc-----------------CCCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 8765 2336888888 554 456677778889999999999988866544
Q ss_pred CCCCCCCccccccceeeecCC
Q 004141 338 SSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.|.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4577777644
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=94.93 Aligned_cols=234 Identities=14% Similarity=0.105 Sum_probs=129.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-hcCCC---------
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-QSLPG--------- 590 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~-~~~~~--------- 590 (771)
.+..++.|+.. ..+.+|++|.+.|.+...+.......+..|++.|+..+.+..+- ||..-. +....
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678754 34568999999996654333333344677888899999988554 433211 11100
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-hc-CCCCCcchhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-VG-TTDIPDWCYV 668 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-~~-~~~~~~~~~~ 668 (771)
..+...+.++...++|+.+++ ..+++|.|.||||.+|.++++..|..+..+-+.++......+ .+ .....+|...
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G---~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~W~~L 229 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREG---YGPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSINWDAL 229 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcC---CCceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCCHHHH
Confidence 112334667778888998885 358999999999999999999998876655555543321111 11 1122234322
Q ss_pred hhc-cCCC--------CccCC---------CCCChhhHH-HHhhcCcccccCCCCC-----cEEEEeeCCCCccCcHHHH
Q 004141 669 ESY-GSKG--------KDSFT---------ESPSVEDLT-RFHSKSPISHISKVKT-----PTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 669 ~~~-~~~~--------~~~~~---------~~~~~~~~~-~~~~~sp~~~~~~i~~-----P~lii~G~~D~~vp~~~~~ 724 (771)
+.. .... ..... .....+... ....+.-..++.+..+ .+.++.+++|..||.++..
T Consensus 230 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYVPr~~v~ 309 (348)
T PF09752_consen 230 EKQFEDTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYVPRHGVL 309 (348)
T ss_pred HHHhcccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEechhhcc
Confidence 111 0000 00000 000011111 1111222233444333 3888899999999987766
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.+.+... .+++.++++ ||.-...-+...+.+.|.+=|
T Consensus 310 ~Lq~~WP----GsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf 346 (348)
T PF09752_consen 310 SLQEIWP----GSEVRYLPG-GHVSAYLLHQEAFRQAIYDAF 346 (348)
T ss_pred hHHHhCC----CCeEEEecC-CcEEEeeechHHHHHHHHHHh
Confidence 6555443 367778876 996443333334555666544
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-08 Score=91.86 Aligned_cols=248 Identities=13% Similarity=0.165 Sum_probs=149.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....|||||++|+..+-++ ++++| ..|+.++-..-.. ......-|....+++||.|.+.||..+
T Consensus 215 h~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQA-qd~fMMmd~aVlci~FSRDsEMlAsGs------ 282 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQA-QDNFMMMDDAVLCISFSRDSEMLASGS------ 282 (508)
T ss_pred chhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhhh-hcceeecccceEEEeecccHHHhhccC------
Confidence 355679999999998755544 88899 4565544322110 000111233446899999998887743
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+..|-+|.+.+|...+--.-....++..+.||.|+..
T Consensus 283 --------------------------------------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq---- 320 (508)
T KOG0275|consen 283 --------------------------------------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ---- 320 (508)
T ss_pred --------------------------------------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch----
Confidence 33578889888887543311234557889999999999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+-.++.. .+.+.-+ .+|+ .+.+..+...+....|++||..|+-.+.
T Consensus 321 iLS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 321 ILSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hhcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 88776321 3334444 4454 4556666777899999999999998887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC-CEEEEEeeeCCeeEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg-~~l~~~~~~~~~~~l 415 (771)
+. .+.+|+.++++-........ .+. .+.++-.-|.+ ..+++ .+ ....+
T Consensus 369 Dg-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iV-CN--rsntv 417 (508)
T KOG0275|consen 369 DG-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIV-CN--RSNTV 417 (508)
T ss_pred Cc-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEE-Ec--CCCeE
Confidence 64 37778877765421110000 000 11111222222 22222 11 23568
Q ss_pred EEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 416 ISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|.+++.+.-++..+.+. +++-...+||.|.++|+..++ ..+|.+...++
T Consensus 418 ~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED----~vlYCF~~~sG 469 (508)
T KOG0275|consen 418 YIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED----GVLYCFSVLSG 469 (508)
T ss_pred EEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC----cEEEEEEeecC
Confidence 99998654455555432 355567889999999998764 34666655444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-08 Score=95.48 Aligned_cols=274 Identities=11% Similarity=0.019 Sum_probs=151.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.|++|+++|-++. ..+.-+|.+.- +.. ..|- ..+......+....||||.++|+--...+ ...
T Consensus 232 FS~nGkyLAsaSk-------D~Taiiw~v~~--d~~--~kl~-~tlvgh~~~V~yi~wSPDdryLlaCg~~e-----~~~ 294 (519)
T KOG0293|consen 232 FSHNGKYLASASK-------DSTAIIWIVVY--DVH--FKLK-KTLVGHSQPVSYIMWSPDDRYLLACGFDE-----VLS 294 (519)
T ss_pred EcCCCeeEeeccC-------CceEEEEEEec--Ccc--eeee-eeeecccCceEEEEECCCCCeEEecCchH-----hee
Confidence 3788888887543 23456666443 221 1111 11111225688999999999997654333 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC-Cccccc
Q 004141 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK-GQGDWE 205 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 205 (771)
+| +.|..++......+. ...+.+|-|||.+++..+.+...- .| ..++.....+......+ ......
T Consensus 295 lwDv~tgd~~~~y~~~~~~--------S~~sc~W~pDg~~~V~Gs~dr~i~--~w-dlDgn~~~~W~gvr~~~v~dlait 363 (519)
T KOG0293|consen 295 LWDVDTGDLRHLYPSGLGF--------SVSSCAWCPDGFRFVTGSPDRTII--MW-DLDGNILGNWEGVRDPKVHDLAIT 363 (519)
T ss_pred eccCCcchhhhhcccCcCC--------CcceeEEccCCceeEecCCCCcEE--Ee-cCCcchhhcccccccceeEEEEEc
Confidence 66 445544443322111 115788999999988766553211 11 11111111222111111 123344
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.|+...+.......|.+++.++...+.+ +..+..+.++..|-||+. +.+.- .+..|..+
T Consensus 364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~qei~LW 422 (519)
T KOG0293|consen 364 YDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQEIHLW 422 (519)
T ss_pred CCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccCeeEEe
Confidence 4544444444567888888887766656 566678899999999995 43331 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ +... +++-..+.. .+++ .|- -|.+.|+-.+. ..++|+|+..+|.
T Consensus 423 Dl-----------------~e~~lv~kY~Ghkq~~fiIrS-CFgg~~~~fiaSGSE-----------D~kvyIWhr~sgk 473 (519)
T KOG0293|consen 423 DL-----------------EENKLVRKYFGHKQGHFIIRS-CFGGGNDKFIASGSE-----------DSKVYIWHRISGK 473 (519)
T ss_pred ec-----------------chhhHHHHhhcccccceEEEe-ccCCCCcceEEecCC-----------CceEEEEEccCCc
Confidence 87 3221 122221111 1222 222 22233332222 3579999988887
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.....++..- .+.-++|+|-....+.+++.++..+||...
T Consensus 474 ll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 474 LLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 6544333311 244568999999898998899999999754
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=95.62 Aligned_cols=101 Identities=25% Similarity=0.390 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|.|+++||.+.... .|......+... .|.|+.+|+|| +|.+. . . ..........+..+.+.. .
T Consensus 21 ~~~i~~~hg~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~g---~g~s~-~-----~-~~~~~~~~~~~~~~~~~~--~ 86 (282)
T COG0596 21 GPPLVLLHGFPGSSS--VWRPVFKVLPALAARYRVIAPDLRG---HGRSD-P-----A-GYSLSAYADDLAALLDAL--G 86 (282)
T ss_pred CCeEEEeCCCCCchh--hhHHHHHHhhccccceEEEEecccC---CCCCC-c-----c-cccHHHHHHHHHHHHHHh--C
Confidence 458999999876532 333322222221 19999999998 44442 0 0 111122233333444432 2
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
..++.++|||+||.+++.++.++|+.++++|+.++..
T Consensus 87 ~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 87 LEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 3449999999999999999999999999999888654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=104.79 Aligned_cols=149 Identities=21% Similarity=0.245 Sum_probs=93.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-----------cce-----EEEecCCcccccccCCCcccceee
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-----------QLE-----KEFHVPQTVHGSVYADGWFEGISW 160 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-----------~~~-----~~~~~~~~~~g~~~~~~~~~~~~w 160 (771)
.+.+.-+.|||||++||+.++.. +..+| ... ... +....-.+. +..+..+.|
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H------~~DV~Dv~W 137 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH------DSDVLDVNW 137 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecC------CCccceecc
Confidence 35678899999999999876653 76777 221 000 000000111 122368999
Q ss_pred cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC
Q 004141 161 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 240 (771)
Q Consensus 161 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~ 240 (771)
|||+..|+..+-+ ..+.+||..+.+...+. .....
T Consensus 138 sp~~~~lvS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s 172 (942)
T KOG0973|consen 138 SPDDSLLVSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQS 172 (942)
T ss_pred CCCccEEEEeccc--------------------------------------------ceEEEEccccceeeeee-ecccc
Confidence 9999999886433 67888988776544441 33444
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--- 317 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--- 317 (771)
-+..++|-|-|++ ++..+. +| .|-++++. +.+-.+.+++...
T Consensus 173 ~VKGvs~DP~Gky----~ASqsd-------------Dr--tikvwrt~----------------dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 173 LVKGVSWDPIGKY----FASQSD-------------DR--TLKVWRTS----------------DWGIEKSITKPFEESP 217 (942)
T ss_pred cccceEECCccCe----eeeecC-------------Cc--eEEEEEcc----------------cceeeEeeccchhhCC
Confidence 6788999999998 887762 22 33333331 3344455554322
Q ss_pred ---cccceeecCCCCEEEEEecC
Q 004141 318 ---SAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 318 ---~~~~p~~SpDG~~l~f~~~~ 337 (771)
....+.|||||++|+..-.-
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred CcceeeecccCCCcCeecchhhc
Confidence 36789999999998865433
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.8e-07 Score=85.18 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=171.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+....|+|||..+|-. +..+.+.+| -.+..+....+ .+..|.| ..+.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~l-kgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWVL-KGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceeee-cccccee------EeeeeccCCCEEEEecCCceEE
Confidence 668889999999988753 344455667 23332222211 2333334 6899999999999888776543
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCccc--CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.|+...++...+.+.+....+... -.+.|..+ .+....++.+||....+..++ .+.......+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 455555555555544444443333 12223332 233467999999988877777 566778889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+.-.+ -+.+|-++|+- ...-.-.|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55443 12255666651 2233455667777899999999999988777
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.+. .|.+||...-...+ ..+.+.+... -. ++.++-..+|||+++.+-+.+. ...+
T Consensus 236 Md~-----------tvrvwd~rp~~p~~------R~v~if~g~~-hn----feknlL~cswsp~~~~i~ags~---dr~v 290 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAPSQ------RCVKIFQGHI-HN----FEKNLLKCSWSPNGTKITAGSA---DRFV 290 (338)
T ss_pred ccc-----------eEEEEEecccCCCC------ceEEEeecch-hh----hhhhcceeeccCCCCccccccc---cceE
Confidence 664 46677654322210 0111111100 00 1223456789999997765443 3458
Q ss_pred EEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004141 416 ISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 416 ~~~d~~tg~~-~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~ 463 (771)
|.+|..+... ..|....+.+....|.|....|+..+++ .+||+.
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd----k~i~lg 335 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD----KTIYLG 335 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC----ceeEee
Confidence 8888766443 3445455566777888877765544432 346664
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=101.11 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHH-HHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSK-SLAF-LSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~-la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..|++|++||..... ...|.. .... +...+|.|+++|+++.... .+.... . ......+++...+++|.+...+
T Consensus 35 ~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~--~y~~a~-~-~~~~v~~~la~~l~~L~~~~g~ 109 (275)
T cd00707 35 SRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANP--NYPQAV-N-NTRVVGAELAKFLDFLVDNTGL 109 (275)
T ss_pred CCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECcccccc--ChHHHH-H-hHHHHHHHHHHHHHHHHHhcCC
Confidence 468899999976543 133433 3333 4456899999999974211 000000 0 0011135677778888776556
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~ 652 (771)
+.++|.|+|||+||+++..++.++|++++.+++..|...
T Consensus 110 ~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 110 SLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred ChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 778999999999999999999999999999999888643
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.1e-08 Score=103.18 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchH-HHHHHH-H-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSK-SLAFLS-S-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..|++|++||.........|.. ....|. . ..|.|+++|++|. |.+...... .......+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~---g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSR---AQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCc---CCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999765432234544 344443 2 3699999999983 332111000 1111123566677777766544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++..+|.++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678899999999999999999998899999999988864
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-06 Score=84.00 Aligned_cols=296 Identities=13% Similarity=0.073 Sum_probs=156.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+..-.-++|+++...|++-...+.|++|++..=..+..+.....++. .....++|+||-+-+++.-.++ ..-.+|.+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~g-~~l~vyk~ 162 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKRG-NKLCVYKL 162 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEccC-CEEEEEEe
Confidence 44455666776666666666777888887743222222222222232 3467899999999988766543 33444544
Q ss_pred e--cCC-cceEEEecC----CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 130 W--SQS-QLEKEFHVP----QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 130 ~--~~~-~~~~~~~~~----~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
. .+| -.-..+..+ ...|.. ..-++-..-.+++|+..+
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v-----~~i~iGiA~~~k~imsas------------------------------- 206 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQV-----DIINIGIAGNAKYIMSAS------------------------------- 206 (420)
T ss_pred eecccCCCCcccccccccccchhccc-----ceEEEeecCCceEEEEec-------------------------------
Confidence 4 111 111111111 000100 001233334444444432
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
....|++|++.+.....+ -.........+.||||+. |+..+...+ -.+
T Consensus 207 -------------~dt~i~lw~lkGq~L~~i--dtnq~~n~~aavSP~GRF----ia~~gFTpD-------------VkV 254 (420)
T KOG2096|consen 207 -------------LDTKICLWDLKGQLLQSI--DTNQSSNYDAAVSPDGRF----IAVSGFTPD-------------VKV 254 (420)
T ss_pred -------------CCCcEEEEecCCceeeee--ccccccccceeeCCCCcE----EEEecCCCC-------------ceE
Confidence 236899999996666666 233445667899999998 887763222 123
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--C-
Q 004141 283 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--N- 359 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~- 359 (771)
|-.=. + +++..+ +-...-.|..+...+...+|||+.++++..+.+. ..+||-.|+.= +
T Consensus 255 wE~~f--~--kdG~fq------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~q 315 (420)
T KOG2096|consen 255 WEPIF--T--KDGTFQ------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQ 315 (420)
T ss_pred EEEEe--c--cCcchh------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCC
Confidence 32221 0 011110 1122345666677789999999999999998774 35555444311 1
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCCcee
Q 004141 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSW 437 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~ 437 (771)
..+.+-.+. .+... -....-.+..||.|+.|.++. +...++ +...+|+...-.. ....+..
T Consensus 316 Dpk~Lk~g~--------~pl~a-----ag~~p~RL~lsP~g~~lA~s~--gs~l~~--~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 316 DPKILKEGS--------APLHA-----AGSEPVRLELSPSGDSLAVSF--GSDLKV--FASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CchHhhcCC--------cchhh-----cCCCceEEEeCCCCcEEEeec--CCceEE--EEcccCccchhHHHhhcCceee
Confidence 111111110 00000 001123667899999665543 333444 4555665443222 2235677
Q ss_pred eEEeecCCEEEEEEe
Q 004141 438 SLLTLDGDNIIAVSS 452 (771)
Q Consensus 438 ~~~s~dg~~l~~~~~ 452 (771)
..|+++|++++.+..
T Consensus 379 is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 379 ISYSSDGKYIATCGD 393 (420)
T ss_pred EEecCCCcEEeeecc
Confidence 899999998876653
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=87.85 Aligned_cols=221 Identities=13% Similarity=0.149 Sum_probs=112.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc-
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS- 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~- 594 (771)
.+|..+..|--.|+.. ..++.++||+..|.+.. ...|...+.+|+.+||.|+.+|.--.- |.+... ..++..
T Consensus 10 ~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~rr--mdh~agLA~YL~~NGFhViRyDsl~Hv--GlSsG~--I~eftms 82 (294)
T PF02273_consen 10 EDGRQIRVWETRPKNN-EPKRNNTILIAPGFARR--MDHFAGLAEYLSANGFHVIRYDSLNHV--GLSSGD--INEFTMS 82 (294)
T ss_dssp TTTEEEEEEEE---TT-S---S-EEEEE-TT-GG--GGGGHHHHHHHHTTT--EEEE---B-----------------HH
T ss_pred CCCCEEEEeccCCCCC-CcccCCeEEEecchhHH--HHHHHHHHHHHhhCCeEEEeccccccc--cCCCCC--hhhcchH
Confidence 4688899999889854 44567899999996544 447888999999999999999965321 111100 111211
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+++..+++|+.+++ ..+++|+-.|.-|-+|...+++ . ....+|...+++++..........++.-...-...
T Consensus 83 ~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~lp 157 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQLP 157 (294)
T ss_dssp HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG--
T ss_pred HhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhCC
Confidence 23578889999999775 5779999999999999999985 4 37777888899987533211000000000000000
Q ss_pred CCccCCCCCC-hhh-HHHH--hh----cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 675 GKDSFTESPS-VED-LTRF--HS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 675 ~~~~~~~~~~-~~~-~~~~--~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
..-.+.+... .+. .... .. .|....++.+.+|++..++++|.+|...+..++...+.. ..++++.++|+.
T Consensus 158 ~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s--~~~klysl~Gs~ 235 (294)
T PF02273_consen 158 EDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS--NKCKLYSLPGSS 235 (294)
T ss_dssp SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT----EEEEEETT-S
T ss_pred CcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--CceeEEEecCcc
Confidence 0000000000 000 0000 01 123345778899999999999999977776666555433 358899999999
Q ss_pred ccCC
Q 004141 747 HGIE 750 (771)
Q Consensus 747 H~~~ 750 (771)
|.+.
T Consensus 236 HdL~ 239 (294)
T PF02273_consen 236 HDLG 239 (294)
T ss_dssp S-TT
T ss_pred chhh
Confidence 9875
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.6e-06 Score=91.96 Aligned_cols=163 Identities=8% Similarity=0.045 Sum_probs=96.2
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCcc-eE----EEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQL-EK----EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+.+...+|+|+ +..||..+.. +.-.+|.+..++.. .. +..+. +..+ .+..++|+|++..++..+.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~D--gtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~------~V~sVaf~P~g~~iLaSgS 145 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSED--LTIRVWEIPHNDESVKEIKDPQCILK-GHKK------KISIIDWNPMNYYIMCSSG 145 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCCccccccccceEEee-cCCC------cEEEEEECCCCCeEEEEEe
Confidence 56889999997 6777665443 22233333222211 11 11111 1111 2368999999987765432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++.... ......+..+.|+|||+
T Consensus 146 -------------------------------------------~DgtIrIWDl~tg~~~~~--i~~~~~V~SlswspdG~ 180 (568)
T PTZ00420 146 -------------------------------------------FDSFVNIWDIENEKRAFQ--INMPKKLSSLKWNIKGN 180 (568)
T ss_pred -------------------------------------------CCCeEEEEECCCCcEEEE--EecCCcEEEEEECCCCC
Confidence 236789999988875433 22334678899999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccc-----cceeecC
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSA-----FFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~-----~~p~~Sp 326 (771)
. |+..+ ....|.++|+ .+++. ..+..+.+.. ....||+
T Consensus 181 l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 181 L----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred E----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 7 66554 2236888887 44433 3344443321 2224579
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|+++|+..+.+. ....+|.+||+..
T Consensus 225 d~~~IlTtG~d~-------~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSK-------NNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCC-------CCccEEEEEECCC
Confidence 999888777553 1234699999875
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=89.17 Aligned_cols=265 Identities=13% Similarity=0.056 Sum_probs=136.7
Q ss_pred CCCCcceEEEEEee-chhhcccceeEEEEEEeecCCCCccceeecCCc--cccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 49 GNGNGTQAMFSISQ-PNLLANKRKKFMLSTVISKENENSVTFQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|+||+.++....- .-+.+++....+.++|+.+.. ....+...+-| .........++||||++|++ .+.. ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V-~n~~-p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL-PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF-YQFS-PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-EEeEEccCCCchhhccCccceEEECCCCCEEEE-ecCC-CCCE
Confidence 57899988766541 122344455677777764332 11122211100 00122447889999999854 4432 2345
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCC-CCCCCCCccCCCCCCccc
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS-TKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (771)
+-+++ ..++....+.++...+.....+. .....++||+.+.+..+...... .-.... .......... . .
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~--~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~r-----P-~ 200 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTAND--TFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINH-----P-A 200 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCC--ccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccC-----C-c
Confidence 66666 55555555665543332222222 34456789987766554432210 000000 0000000000 0 2
Q ss_pred ccC-CcCcccCCccCceEEEEEccCCceeeccC----CC----CCCccc---eEEEecCCCCCccEEEEEeecCcceeee
Q 004141 204 WEE-DWGETYAGKRQPSLFVININSGEVQAVKG----IP----KSLSVG---QVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 204 ~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----~~----~~~~~~---~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
|.+ |....++.. ...|+++|+.+.+...... +. ..+..+ .++++|||++ ++........
T Consensus 201 ~~~~dg~~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~~---- 271 (352)
T TIGR02658 201 YSNKSGRLVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRAK---- 271 (352)
T ss_pred eEcCCCcEEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCcc----
Confidence 233 433333333 3899999976655433310 11 122222 3899999997 6653421110
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSL 351 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l 351 (771)
+.+ .....+|+.+|+ .+++...-...........+||||+.++|..+.. ...|
T Consensus 272 ~th-k~~~~~V~ViD~-----------------~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~---------s~~V 324 (352)
T TIGR02658 272 WTH-KTASRFLFVVDA-----------------KTGKRLRKIELGHEIDSINVSQDAKPLLYALSTG---------DKTL 324 (352)
T ss_pred ccc-cCCCCEEEEEEC-----------------CCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCC---------CCcE
Confidence 000 012248999998 6666543222344677899999999667777653 2469
Q ss_pred eeeecCCCCC
Q 004141 352 HRIDWPTNGN 361 (771)
Q Consensus 352 ~~~d~~~~~~ 361 (771)
.++|..+++.
T Consensus 325 sViD~~t~k~ 334 (352)
T TIGR02658 325 YIFDAETGKE 334 (352)
T ss_pred EEEECcCCeE
Confidence 9999888764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-06 Score=94.77 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=148.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC---
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--- 122 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--- 122 (771)
....||||++|+|+.+... .....++.+++.++ +. + ...+.. .....+.|++||+.++|++.....
T Consensus 128 ~~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg--~~--l-~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETG--KF--L-PDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEETTTSSEEEEEEEETT----SSEEEEEEEETTTT--EE--E-EEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeECCCCCEEEEEecCCC----CceEEEEEEECCCC--cC--c-CCcccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 3456899999999987643 45567888887443 11 1 111111 112238999999999999876532
Q ss_pred ----CCeEEEEecCCc-ce-EEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 123 ----SPIQFELWSQSQ-LE-KEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 123 ----~~~~~~~~~~~~-~~-~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
..+++....+.. .. .++ ...... .++..+.+|+||++|+..+....
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~-------~~~~~~~~s~d~~~l~i~~~~~~-------------------- 249 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEP-------FWFVSVSRSKDGRYLFISSSSGT-------------------- 249 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG-EEEEC-TTCT-------TSEEEEEE-TTSSEEEEEEESSS--------------------
T ss_pred cCCCCcEEEEEECCCChHhCeeEEeecCCC-------cEEEEEEecCcccEEEEEEEccc--------------------
Confidence 233444333322 22 233 322211 01347889999999887655431
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCC-----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSG-----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....+|++|+..+ +.+.+ .+.........-.. |.. +++.++.+.+
T Consensus 250 --------------------~~s~v~~~d~~~~~~~~~~~~~l--~~~~~~~~~~v~~~-~~~----~yi~Tn~~a~--- 299 (414)
T PF02897_consen 250 --------------------SESEVYLLDLDDGGSPDAKPKLL--SPREDGVEYYVDHH-GDR----LYILTNDDAP--- 299 (414)
T ss_dssp --------------------SEEEEEEEECCCTTTSS-SEEEE--EESSSS-EEEEEEE-TTE----EEEEE-TT-T---
T ss_pred --------------------cCCeEEEEeccccCCCcCCcEEE--eCCCCceEEEEEcc-CCE----EEEeeCCCCC---
Confidence 1278999999875 56666 33322222222122 666 8888865443
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcc
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~ 346 (771)
+..|+.+++ +... ...+..+.....--.++..+++|++....+
T Consensus 300 --------~~~l~~~~l-----------------~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-------- 346 (414)
T PF02897_consen 300 --------NGRLVAVDL-----------------ADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-------- 346 (414)
T ss_dssp --------T-EEEEEET-----------------TSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET--------
T ss_pred --------CcEEEEecc-----------------cccccccceeEEcCCCCceeEEEEEEECCEEEEEEEEC--------
Confidence 248999998 3322 224444433333345566788898888775
Q ss_pred ccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCc
Q 004141 347 ATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE 424 (771)
Q Consensus 347 ~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~ 424 (771)
+..+|.++++. +.....+... ..+ .+......+++..++|..+. -....+|.+|+.+++
T Consensus 347 ~~~~l~v~~~~~~~~~~~~~~p-----------~~g--------~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 347 GSSRLRVYDLDDGKESREIPLP-----------EAG--------SVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TEEEEEEEETT-TEEEEEEESS-----------SSS--------EEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CccEEEEEECCCCcEEeeecCC-----------cce--------EEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 36789999988 3222111000 000 11122334567777777654 345579999999999
Q ss_pred EEEec
Q 004141 425 LLRIT 429 (771)
Q Consensus 425 ~~~l~ 429 (771)
.+.+.
T Consensus 408 ~~~~k 412 (414)
T PF02897_consen 408 LTLLK 412 (414)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-06 Score=90.44 Aligned_cols=239 Identities=15% Similarity=0.095 Sum_probs=157.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
...+|+--|.+|||.+.+- ..--.|.-....-..+...+..-.....|++|+....++..+..+-+||..+|-....-
T Consensus 311 ~t~~~N~tGDWiA~g~~kl-gQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF- 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKL-GQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF- 388 (893)
T ss_pred eEEEecccCCEEEEcCCcc-ceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe-
Confidence 6889999999999976541 11112221111111222333344456779999766677778899999999988654431
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
+.....+..+.|+.+|+. |+-.+ -++.+..+|+. .....+.+|..
T Consensus 389 teHts~Vt~v~f~~~g~~----llssS---------------LDGtVRAwDlk----------------RYrNfRTft~P 433 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNV----LLSSS---------------LDGTVRAWDLK----------------RYRNFRTFTSP 433 (893)
T ss_pred ccCCCceEEEEEEecCCE----EEEee---------------cCCeEEeeeec----------------ccceeeeecCC
Confidence 566678899999999995 55544 33367777771 23344555544
Q ss_pred Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 316 IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 316 ~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.. .....+..|-|. |++....+ ...|++|++++|+..-+.++... -+..+
T Consensus 434 ~p~QfscvavD~sGe-lV~AG~~d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l 484 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGE-LVCAGAQD---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGL 484 (893)
T ss_pred CceeeeEEEEcCCCC-EEEeeccc---------eEEEEEEEeecCeeeehhcCCCC-------------------cceee
Confidence 33 355667777788 56665443 57899999999997655544321 24567
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+|+|+|. ++++.+++...++|-+=-..++++.+.-... +-...|.|||+.|..+..+ .+|-..+..
T Consensus 485 ~f~~~~~-~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld----gqItf~d~~ 550 (893)
T KOG0291|consen 485 SFSPDGS-LLASGSWDKTVRIWDIFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD----GQITFFDIK 550 (893)
T ss_pred EEccccC-eEEeccccceEEEEEeeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec----ceEEEEEhh
Confidence 8999998 6688899999999987666677777755433 4557899999999876533 344444443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=102.50 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=73.1
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCC
Q 004141 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~ 316 (771)
++..+..+.||||+.. +|-.+. +..|.+++. .+ ...+.|-.+.
T Consensus 128 H~~DV~Dv~Wsp~~~~----lvS~s~---------------DnsViiwn~-----------------~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSL----LVSVSL---------------DNSVIIWNA-----------------KTFELLKVLRGHQ 171 (942)
T ss_pred CCCccceeccCCCccE----EEEecc---------------cceEEEEcc-----------------ccceeeeeeeccc
Confidence 4456778899999997 777762 225777775 33 3456666777
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
..+....|.|-|++||..+.+. .|.+|+... +-.+.+++.... .+.. .....+.
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDr-----------tikvwrt~dw~i~k~It~pf~~------~~~~--------T~f~RlS 226 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDR-----------TLKVWRTSDWGIEKSITKPFEE------SPLT--------TFFLRLS 226 (942)
T ss_pred ccccceEECCccCeeeeecCCc-----------eEEEEEcccceeeEeeccchhh------CCCc--------ceeeecc
Confidence 7899999999999998888765 255555322 111222221110 0000 1235789
Q ss_pred cccCCCEEEEEeee-CCeeEEEEEEC
Q 004141 396 WLSDGCTMLLSSIW-GSSQVIISVNV 420 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~-~~~~~l~~~d~ 420 (771)
|||||++|.....- ++...+-.++.
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEec
Confidence 99999988654442 23333444444
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-06 Score=83.32 Aligned_cols=210 Identities=13% Similarity=0.176 Sum_probs=112.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEE-EEECCCC---------CCCCChhh-
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSL-LIVNYRG---------SLGFGEEA- 584 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~V-v~~d~rG---------~~~~g~~~- 584 (771)
.|...+.++..|+++.++.++|+|.++-|.... ...... ...+++.-..+ +.+.|+. ...|-...
T Consensus 19 ~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~vf---~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~DyTp~~~ 95 (264)
T COG2819 19 TGRKYRIFIATPKNYPKPGGYPVLYMLDGNAVF---NALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAYDYTPPSA 95 (264)
T ss_pred CCcEEEEEecCCCCCCCCCCCcEEEEecchhhh---chHHHHhhhhhhcCCCceEEEeccccccccccccccccCCCCCC
Confidence 467788899999988777779977777663221 111112 22233322222 2333332 11111100
Q ss_pred ---h----hcCCCCccccc--hhhHHHHHHHHH-HcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 585 ---L----QSLPGKVGSQD--VNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 585 ---~----~~~~~~~~~~~--~~D~~~~i~~l~-~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
. .......|..+ .+.+..-+.-.+ ++..++.++.+|+|||+||.+++.....+|+.|...++.+|..-+.
T Consensus 96 ~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~ 175 (264)
T COG2819 96 NAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWH 175 (264)
T ss_pred CcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhC
Confidence 0 00011111111 233444444333 3456899999999999999999999999999999999999975211
Q ss_pred hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEe--eCCCCc------cCcHHHHHH
Q 004141 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL--GAQDLR------VPVSNGLQY 726 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~--G~~D~~------vp~~~~~~~ 726 (771)
+........-.... + ..++.|.. |+.|.. ....++.+.
T Consensus 176 --------------------------------n~~~l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~ 221 (264)
T COG2819 176 --------------------------------NEAILREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAEL 221 (264)
T ss_pred --------------------------------CHHHhccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHH
Confidence 11111111111111 2 33444444 444432 122344555
Q ss_pred HHHHHh-CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 727 ARALRE-KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 727 ~~~l~~-~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+++ .|..+.+..+++.+|+-. -...+..++.|+.
T Consensus 222 ~~~~~~~~g~~~~f~~~~~~~H~~~----~~~~~~~al~~l~ 259 (264)
T COG2819 222 SSLLEKRTGARLVFQEEPLEHHGSV----IHASLPSALRFLD 259 (264)
T ss_pred HHHHhhccCCceEecccccccccch----HHHHHHHHHHhhh
Confidence 556666 677888999998888643 1233445555543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.5e-06 Score=90.75 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccC
Q 004141 106 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 106 ~SPdG~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 183 (771)
.+.+++++|+.-... ++...++.+|..+....+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455677788766543 2444567777444333333322 111222 68999997 6767665432
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---------eeccCCCCCCccceEEEecCCCCC
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---------~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..|.+||+.++.. ..+ ......+..+.|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 5678888765321 122 223346788999999987
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
++.++- .+..|.++|+ .+++. ..+. ....+.+..|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765541 2236788887 44442 3333 3456889999999998876
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
...+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5543 3589999887654
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.3e-06 Score=86.82 Aligned_cols=260 Identities=13% Similarity=0.112 Sum_probs=146.1
Q ss_pred echhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEE
Q 004141 62 QPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF 139 (771)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~ 139 (771)
...|+.+...+++.+|+. .+... ..|....+.+....|+.+|.+|+-..-.+ ..++|+ .+...+..
T Consensus 247 G~~LatG~~~G~~riw~~--~G~l~-----~tl~~HkgPI~slKWnk~G~yilS~~vD~-----ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 247 GTLLATGSEDGEARIWNK--DGNLI-----STLGQHKGPIFSLKWNKKGTYILSGGVDG-----TTILWDAHTGTVKQQF 314 (524)
T ss_pred CCeEEEeecCcEEEEEec--Cchhh-----hhhhccCCceEEEEEcCCCCEEEeccCCc-----cEEEEeccCceEEEee
Confidence 333334445677777664 33222 22334446799999999999998654332 455663 35555554
Q ss_pred ecCCcccccccCCCccc---ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCcc
Q 004141 140 HVPQTVHGSVYADGWFE---GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 216 (771)
Q Consensus 140 ~~~~~~~g~~~~~~~~~---~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 216 (771)
.+.....-+| +|.. -.+=++||..-+|--..+.+. .....+........|.+...-++....
T Consensus 315 ~~~s~~~lDV---dW~~~~~F~ts~td~~i~V~kv~~~~P~------------~t~~GH~g~V~alk~n~tg~LLaS~Sd 379 (524)
T KOG0273|consen 315 EFHSAPALDV---DWQSNDEFATSSTDGCIHVCKVGEDRPV------------KTFIGHHGEVNALKWNPTGSLLASCSD 379 (524)
T ss_pred eeccCCccce---EEecCceEeecCCCceEEEEEecCCCcc------------eeeecccCceEEEEECCCCceEEEecC
Confidence 4422221111 1111 223456666544433322221 112223333444556666444455556
Q ss_pred CceEEEEEccC-CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~-~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+..|-+|.... +....+ -.....+-.+.|||+|.. ..+......+ .....++.+-.+|+
T Consensus 380 D~TlkiWs~~~~~~~~~l--~~Hskei~t~~wsp~g~v-------~~n~~~~~~l---~sas~dstV~lwdv-------- 439 (524)
T KOG0273|consen 380 DGTLKIWSMGQSNSVHDL--QAHSKEIYTIKWSPTGPV-------TSNPNMNLML---ASASFDSTVKLWDV-------- 439 (524)
T ss_pred CCeeEeeecCCCcchhhh--hhhccceeeEeecCCCCc-------cCCCcCCceE---EEeecCCeEEEEEc--------
Confidence 67888888543 334444 333445677899999874 1111111111 11224456777887
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....|+.+...+.+.+|||||++||+-+.+. .+++|+.++++..+-..+.
T Consensus 440 ---------~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg-----------~V~iws~~~~~l~~s~~~~------ 493 (524)
T KOG0273|consen 440 ---------ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG-----------CVHIWSTKTGKLVKSYQGT------ 493 (524)
T ss_pred ---------cCCceeEeeccCCCceEEEEecCCCcEEEecCCCC-----------eeEeccccchheeEeecCC------
Confidence 444 4566788888899999999999999877664 3778887776653221111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
.++..++|+.+|..|....+
T Consensus 494 --------------~~Ifel~Wn~~G~kl~~~~s 513 (524)
T KOG0273|consen 494 --------------GGIFELCWNAAGDKLGACAS 513 (524)
T ss_pred --------------CeEEEEEEcCCCCEEEEEec
Confidence 13567899999987766554
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=90.67 Aligned_cols=231 Identities=16% Similarity=0.193 Sum_probs=145.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+..+.|+++|+.||.....+ .+.+|+..+.+++........+.| ++++|. +..+...
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssG-------- 276 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSG-------- 276 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEe--------
Confidence 5688999999999999875544 666775444444444322222233 788998 3223221
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCcc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.+...|...|+...+. ..+ ......+....|++|++.
T Consensus 277 ------------------------------------sr~~~I~~~dvR~~~~~~~~~--~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 277 ------------------------------------SRDGKILNHDVRISQHVVSTL--QGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred ------------------------------------cCCCcEEEEEEecchhhhhhh--hcccceeeeeEECCCCCe---
Confidence 1345677777655432 112 233446778999999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-.++ +..++++|.. .......++++...+...+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 776653 2367777751 44566788889999999999997666554332
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l 415 (771)
. .....|..||..++........ +..+-++.||+..+.|+.+... .+...|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vdt--------------------gsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVDT--------------------GSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEeccccc--------------------CCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 3456799999887765322111 1235688999999988766543 234567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.+.- -..+..+.....-+....+||||..|+....
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 77653 2233444444444556678888887766554
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-07 Score=95.52 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=55.8
Q ss_pred cCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC-CEEEEEeCCCCcc--CCCCCChHHHHHHHHHHHHHh
Q 004141 700 ISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV-ETKVIVFPNDVHG--IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 700 ~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+.+|+ +|+|.+.|+.|.++|+.++..+.+.....+- +.+.++.+++||. +.....+.+.+..|.+||.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999998887643322 3456777789996 445667778999999999864
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-06 Score=82.94 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=117.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCcccccccCC---CcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|-|-+..-+.+.-+. =+.+| ......+........++.++-+ -......|.+||..++-.+.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4678899999877654444332 24455 2223333322222233333222 23468899999998887643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 251 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg 251 (771)
+...|.+||+++|.-++| .+. -.+..-..|||||
T Consensus 216 -------------------------------------------gsssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 -------------------------------------------GSSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred -------------------------------------------CcceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 337899999999998888 433 3355678999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. |...+ -+. ...||... ++-...+-.-..+.+....|||+|+.|
T Consensus 251 d~----lfaAt-~da------------vfrlw~e~------------------q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----LFAAT-CDA------------VFRLWQEN------------------QSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----EEEec-ccc------------eeeeehhc------------------ccceecceeccCCceeeeeecCCCCEE
Confidence 95 44433 211 11344222 112222222233478889999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCC-ccceeeEEeccccc---CCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCA---EGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~~~~~~~~~~~~~~---~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
.|..... ..||............ ..+...+..+.+-+ .... ..+-+.....++|-|-|.+|++.-
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag-~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG-QRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC-cccccCccceeeECCCCCEEEEEE
Confidence 9988654 3466655443322111 11111111111110 0000 112233456788989898887655
Q ss_pred e
Q 004141 408 I 408 (771)
Q Consensus 408 ~ 408 (771)
.
T Consensus 365 K 365 (445)
T KOG2139|consen 365 K 365 (445)
T ss_pred c
Confidence 4
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-06 Score=98.26 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh-------hcCCC------------Cccccc
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL-------QSLPG------------KVGSQD 596 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~-------~~~~~------------~~~~~~ 596 (771)
..|+||++||.... ...|...+..|+++||.|+++|+||.+....... ..... ....+.
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~ 525 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQS 525 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHH
Confidence 46899999996654 3467788889999999999999999443311100 00000 011223
Q ss_pred hhhHHHHHHHHH------Hc----CCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 597 VNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~------~~----~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
+.|+......+. .. ...+..+|.++||||||.++..++..
T Consensus 526 v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 526 ILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 456666555554 11 12456799999999999999999875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.3e-07 Score=90.32 Aligned_cols=239 Identities=15% Similarity=0.164 Sum_probs=143.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..+.|.|+|++|+..+..+ -|.+|.+....-.+ -...| |..+....||++|.+++......-.+
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~fnFEt--ilQaH-----Ds~Vr~m~ws~~g~wmiSgD~gG~iK-- 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSFNFET--ILQAH-----DSPVRTMKWSHNGTWMISGDKGGMIK-- 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCceeeHHH--Hhhhh-----cccceeEEEccCCCEEEEcCCCceEE--
Confidence 477899999999998876554 58888542111100 01112 22347999999999987755444322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
+|......-......+..-.....|++.-..-+.-..+..|-+||....+..++. ......+..+.|.|.- . |+
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~k-g----Li 237 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTK-G----LI 237 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCcc-c----ee
Confidence 4432111110000011112223445554334444455689999998766554431 4556678899999974 4 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+++- ++.-+-.+|. .+++ +-.|..+...+....|+|+|.+|+..+.+.
T Consensus 238 asgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 238 ASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred EEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6652 2225667776 5554 455667788899999999999999888664
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+.++|+.+=+..+...+. ...+....|+|=...|+.+...++....|.+
T Consensus 287 -----------~~kv~DiR~mkEl~~~r~H-------------------kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 287 -----------SCKVFDIRTMKELFTYRGH-------------------KKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred -----------eEEEEehhHhHHHHHhhcc-------------------hhhheeeccccccccceeeccCCCceEEEec
Confidence 3667776632221111100 0124567899988888877777777777766
Q ss_pred E
Q 004141 419 N 419 (771)
Q Consensus 419 d 419 (771)
+
T Consensus 337 ~ 337 (464)
T KOG0284|consen 337 G 337 (464)
T ss_pred c
Confidence 6
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=91.76 Aligned_cols=168 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHH----HHHHHHCCcEEEEECCCCCC--CCChh---------h-hhcCCCCccc-----
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRGSL--GFGEE---------A-LQSLPGKVGS----- 594 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~----~~~la~~G~~Vv~~d~rG~~--~~g~~---------~-~~~~~~~~~~----- 594 (771)
+++-|+++||.+.+. ..|... ...|.+.++..+.+|-+-.. +.+-. . .......|..
T Consensus 3 ~k~riLcLHG~~~na--~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQNA--EIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT--H--HHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcCH--HHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 457899999976653 233333 33444448898888854211 00000 0 0001111111
Q ss_pred cchhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCccchhhhhcCCCC
Q 004141 595 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~~~~~~~~~~~~ 662 (771)
....++..++++|.+ ++. =.+|+|+|.||.+|+.++... ...++.+|+.++.......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555543 332 358999999999999888532 2347888888876421100
Q ss_pred CcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
........+|++|+|.++|.+|.+++++.++.+++.+... .+++.+
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h 196 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEH 196 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEE
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEE
Confidence 0000123457899999999999999999999999999874 567777
Q ss_pred CCCCccCC
Q 004141 743 PNDVHGIE 750 (771)
Q Consensus 743 ~~~~H~~~ 750 (771)
+ +||.+.
T Consensus 197 ~-gGH~vP 203 (212)
T PF03959_consen 197 D-GGHHVP 203 (212)
T ss_dssp S-SSSS--
T ss_pred C-CCCcCc
Confidence 5 588765
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-07 Score=100.16 Aligned_cols=192 Identities=16% Similarity=0.091 Sum_probs=121.3
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+.+||||.+.|+-.+++...+ .|+.......-....+..+...+.|.|.+=.-.+...+..-.+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svR--LWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi-- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVR--LWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI-- 530 (707)
T ss_pred eeeeecccccceeeccCCccee--eeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh--
Confidence 6889999999999999988766 454332222222223333333444555532222333445556666666667666
Q ss_pred CCCCC-ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 236 IPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 236 ~~~~~-~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
..++. .++-+.|.|++.+ ++..+ ..+ .+..+|+. .+..++..+.
T Consensus 531 faghlsDV~cv~FHPNs~Y----~aTGS-------------sD~--tVRlWDv~----------------~G~~VRiF~G 575 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNY----VATGS-------------SDR--TVRLWDVS----------------TGNSVRIFTG 575 (707)
T ss_pred hcccccccceEEECCcccc----cccCC-------------CCc--eEEEEEcC----------------CCcEEEEecC
Confidence 44443 4556899999986 66544 112 45556651 4455666778
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+.+.+|||+|++|+-.+.+ ..|.+||+.++.......+. ...+.++
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed-----------~~I~iWDl~~~~~v~~l~~H-------------------t~ti~Sl 625 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDED-----------GLIKIWDLANGSLVKQLKGH-------------------TGTIYSL 625 (707)
T ss_pred CCCceEEEEEcCCCceEeecccC-----------CcEEEEEcCCCcchhhhhcc-------------------cCceeEE
Confidence 88889999999999999876655 35899999887653221111 1245788
Q ss_pred ccccCCCEEEEEeeeCCeeEEEE
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
.||.||. ++++...++..++|-
T Consensus 626 sFS~dg~-vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 626 SFSRDGN-VLASGGADNSVRLWD 647 (707)
T ss_pred EEecCCC-EEEecCCCCeEEEEE
Confidence 9999998 555666667777773
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=76.53 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=91.6
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEe-cC-CcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELW-SQ-SQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+.+...+|+|- |..||--+.. .-+.+| .. +..-... -+....... +..++|||+|+.||..+.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrs------VRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRS------VRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchhe------eeeeeecCCCcEEEEeeccc
Confidence 46888999997 7655543322 255666 32 2222222 222222112 27999999999999886653
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~ 253 (771)
...+|.-..++..-+.-+ ..+..+..++||++|..
T Consensus 84 --------------------------------------------t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~ 119 (312)
T KOG0645|consen 84 --------------------------------------------TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY 119 (312)
T ss_pred --------------------------------------------eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE
Confidence 233333333333222101 22345778999999998
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~ 330 (771)
|+.-+ |...+|++.++ +..+. -.|.++...+....|.|.-..
T Consensus 120 ----LATCS---------------RDKSVWiWe~d----------------eddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 120 ----LATCS---------------RDKSVWIWEID----------------EDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred ----EEEee---------------CCCeEEEEEec----------------CCCcEEEEeeeccccccccEEEEcCCcce
Confidence 88877 55578888873 33443 456677777889999998776
Q ss_pred EEEEecCC
Q 004141 331 LVFLSAKS 338 (771)
Q Consensus 331 l~f~~~~~ 338 (771)
|+-.+.++
T Consensus 165 L~S~SYDn 172 (312)
T KOG0645|consen 165 LFSCSYDN 172 (312)
T ss_pred eEEeccCC
Confidence 76666654
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-06 Score=84.80 Aligned_cols=169 Identities=21% Similarity=0.296 Sum_probs=102.7
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCCh--------------hhhhc--CCCC-c---
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE--------------EALQS--LPGK-V--- 592 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~--------------~~~~~--~~~~-~--- 592 (771)
...++|+|||-||-++. ..-|+...-.||++||+|.+++.|-....-. .|..- ...+ .
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 36789999999996555 4468888889999999999999985322100 00000 0000 0
Q ss_pred -c----ccchhhHHHHHHHHHHc---------------------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe
Q 004141 593 -G----SQDVNDVLTAIDHVIDM---------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646 (771)
Q Consensus 593 -~----~~~~~D~~~~i~~l~~~---------------------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~ 646 (771)
. ..-+.+|..|++-|.+- +.+|..+++++|||+||..++...+.+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 0 01145666666655431 125677899999999999998877765 45888886
Q ss_pred cCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHH
Q 004141 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 647 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~ 726 (771)
... |++. ... ....+.+-|+|+|.-+ |-.- -+....
T Consensus 271 lD~---------------WM~P---------------l~~-----------~~~~~arqP~~finv~-~fQ~--~en~~v 306 (399)
T KOG3847|consen 271 LDA---------------WMFP---------------LDQ-----------LQYSQARQPTLFINVE-DFQW--NENLLV 306 (399)
T ss_pred eee---------------eecc---------------cch-----------hhhhhccCCeEEEEcc-cccc--hhHHHH
Confidence 544 2211 000 1233456788888833 2221 223344
Q ss_pred HHHHHhCCCCEEEEEeCCCCcc
Q 004141 727 ARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.+.....+..-.++.+.|+-|.
T Consensus 307 mKki~~~n~g~~~it~~GsVHq 328 (399)
T KOG3847|consen 307 MKKIESQNEGNHVITLDGSVHQ 328 (399)
T ss_pred HHhhhCCCccceEEEEccceec
Confidence 4455554555577888888884
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-06 Score=84.29 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.-.|||+|++||..++.. +.+.+. .-+..++..+-..+ ..+.|+.|.-+|+.++.+
T Consensus 13 ~c~fSp~g~yiAs~~~yr-----lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYR-----LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred ceeECCCCCeeeeeeeeE-----EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 457999999999875432 333221 11222222221222 578899999999987543
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 261 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~ 261 (771)
++.+.+|++.-.+..--. -.+..+.....|||||+. |+..
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367888988766543331 234556778899999998 8877
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+. + . .+|-++.+ .+.....+..........+|.|||+..+..++++
T Consensus 110 se----F--------~--lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE----F--------D--LRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec----c--------e--eEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1 1 13444444 3444444444444557789999999998888775
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-05 Score=77.54 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=62.6
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.-.+||+|..+++..... -.+.||+||++.-+...+..... -+..+.|.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk~--------------------piraf~Wd 370 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQKH--------------------PIRAFEWD 370 (447)
T ss_pred ccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhcc--------------------ceeEEEeC
Confidence 46778999999877643322 24679999998755433322211 13345688
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.--+|++-. +..+||.+.+.+.....+......+....|-.+|..++....
T Consensus 371 P~~prL~vct---g~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 371 PGRPRLVVCT---GKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred CCCceEEEEc---CCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 8777776543 456799988866444444443333444556667777665543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=79.40 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=115.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCccccc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGS 148 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 148 (771)
..+.+.+|++... +.+.-+... ++.....|||||+++++..+.+ .+-.++... +...........
T Consensus 85 ~dk~ir~wd~r~~--k~~~~i~~~-----~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~~~~~~~~~~~e~--- 150 (313)
T KOG1407|consen 85 GDKTIRIWDIRSG--KCTARIETK-----GENINITWSPDGEYIAVGNKDD----RITFIDARTYKIVNEEQFKFEV--- 150 (313)
T ss_pred CCceEEEEEeccC--cEEEEeecc-----CcceEEEEcCCCCEEEEecCcc----cEEEEEecccceeehhccccee---
Confidence 4456666666333 233222222 4577899999999999875433 233444222 111111222233
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..++|+-++. +.|..+.- +.-+|.-+. .-.
T Consensus 151 -------ne~~w~~~nd-~Fflt~Gl-----------------------------------------G~v~ILsyp-sLk 180 (313)
T KOG1407|consen 151 -------NEISWNNSND-LFFLTNGL-----------------------------------------GCVEILSYP-SLK 180 (313)
T ss_pred -------eeeeecCCCC-EEEEecCC-----------------------------------------ceEEEEecc-ccc
Confidence 3788885554 66653321 112333333 111
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004141 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.+..| .......--+.|+|||++ ++..+- +..+-++|++ +--=
T Consensus 181 pv~si--~AH~snCicI~f~p~Gry----fA~GsA---------------DAlvSLWD~~----------------ELiC 223 (313)
T KOG1407|consen 181 PVQSI--KAHPSNCICIEFDPDGRY----FATGSA---------------DALVSLWDVD----------------ELIC 223 (313)
T ss_pred ccccc--ccCCcceEEEEECCCCce----Eeeccc---------------cceeeccChh----------------Hhhh
Confidence 22233 222333446789999999 887651 1234445541 2222
Q ss_pred ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004141 309 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.+.++.....++..+||.||++||-.+.+. -|-+.+.++|.. +.+ .+.++
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaSEDh-----------~IDIA~vetGd~---------~~e---I~~~~------- 273 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASASEDH-----------FIDIAEVETGDR---------VWE---IPCEG------- 273 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccCccc-----------eEEeEecccCCe---------EEE---eeccC-------
Confidence 466777788899999999999999877653 255566666553 111 11111
Q ss_pred CCCCCCccccCCCEEEEEeeeC
Q 004141 389 SSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
....++|.|.-..|.|+.+..
T Consensus 274 -~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 274 -PTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred -CceeEEecCCCceeeEEecCC
Confidence 235789999988777776543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.5e-05 Score=94.36 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=131.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------c--eEEEecCCcccccccCCCcccceeecCC-CCeEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~ 169 (771)
+.+...+|+|||+.+|...... .+.+|+... . ..+.... ....+..++|+|. ++.|+.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--------~~~~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--------SRSKLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--------ccCceeeEEeccCCCCEEEE
Confidence 4578899999999998765433 445552111 0 0011111 0112368899885 666766
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004141 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
.+.+...+ .|+............+......+.|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 65554332 344322222222223334444556765 333445666778999999988765433 2223356677885
Q ss_pred -cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeec
Q 004141 249 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFS 325 (771)
Q Consensus 249 -pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~S 325 (771)
++|+. |++.+ .+..|+++|+ .... ...+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~-----------------~~~~~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDL-----------------RNPKLPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCCccceEecCCCCCEEEEEEe
Confidence 56776 66654 2347888887 3322 34455566677888897
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|++.|+..+.+. .|.+||+..+... ... ..+.. |.| +...+..++|+++++.| +
T Consensus 671 -~~~~lvs~s~D~-----------~ikiWd~~~~~~~-~~~---~~l~~--------~~g-h~~~i~~v~~s~~~~~l-a 724 (793)
T PLN00181 671 -DSSTLVSSSTDN-----------TLKLWDLSMSISG-INE---TPLHS--------FMG-HTNVKNFVGLSVSDGYI-A 724 (793)
T ss_pred -CCCEEEEEECCC-----------EEEEEeCCCCccc-cCC---cceEE--------EcC-CCCCeeEEEEcCCCCEE-E
Confidence 788877666542 4778887643210 000 00000 111 01123456799999854 5
Q ss_pred EeeeCCeeEEEE
Q 004141 406 SSIWGSSQVIIS 417 (771)
Q Consensus 406 ~~~~~~~~~l~~ 417 (771)
+.+.++...+|.
T Consensus 725 sgs~D~~v~iw~ 736 (793)
T PLN00181 725 TGSETNEVFVYH 736 (793)
T ss_pred EEeCCCEEEEEE
Confidence 555566555654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-05 Score=78.24 Aligned_cols=237 Identities=16% Similarity=0.187 Sum_probs=135.5
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec-CCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS-pDg~~la~~~~~~~~~~~~ 180 (771)
..|+|.+....|.|+.-. ..+++.++..+....++..+. . .+..+. +||+ |++..
T Consensus 3 Egp~~d~~~g~l~~~D~~---~~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~--------- 58 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIP---GGRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVAD--------- 58 (246)
T ss_dssp EEEEEETTTTEEEEEETT---TTEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEE---------
T ss_pred cceEEECCCCEEEEEEcC---CCEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEE---------
Confidence 368999977777776432 346888885455555555544 2 366777 6754 44432
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC----CCCccceEEEecCCCCCcc
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----~~~~~~~~~wspDg~~~~~ 256 (771)
...+.++|+.+++++.+...+ .......+++.|||+
T Consensus 59 ------------------------------------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~---- 98 (246)
T PF08450_consen 59 ------------------------------------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN---- 98 (246)
T ss_dssp ------------------------------------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-----
T ss_pred ------------------------------------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC----
Confidence 134456688888877763111 234567889999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+........ ......||+++. + ++.+.+..........+|||||+.|++...
T Consensus 99 -ly~t~~~~~~~~------~~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 99 -LYVTDSGGGGAS------GIDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp -EEEEEECCBCTT------CGGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred -EEEEecCCCccc------cccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeeccc
Confidence 777653221100 000157999996 4 566666555555678999999999887665
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.. .+|++++++..... +.. ...+.+ ......+ +..++...+|+ |+++.. +...|+
T Consensus 154 ~~----------~~i~~~~~~~~~~~-~~~-~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~ 208 (246)
T PF08450_consen 154 FN----------GRIWRFDLDADGGE-LSN-RRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIV 208 (246)
T ss_dssp TT----------TEEEEEEEETTTCC-EEE-EEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEE
T ss_pred cc----------ceeEEEeccccccc-eee-eeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEE
Confidence 43 56999998654431 110 000111 0000001 23567777886 554432 345788
Q ss_pred EEECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEe
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSS 452 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s-~dg~~l~~~~~ 452 (771)
+++.++..+..+..+........|. ++.+.|+++.+
T Consensus 209 ~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 209 VFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred EECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 8898733344555443345556774 57788887654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.7e-06 Score=78.23 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=142.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC------c
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------E 229 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~------~ 229 (771)
....|++|.++|+..+.++.. -.|+.-...+....+-...|.-...|+|...-...+.-++.--++++.+. .
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGkl--IvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKL--IVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eeeEecCCcCeEEeeccCCeE--EEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 678899999999888766532 34665556666666677888888888888544444444556666676543 1
Q ss_pred e-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-
Q 004141 230 V-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL- 307 (771)
Q Consensus 230 ~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~- 307 (771)
+ +.+ .........-.|-+|+. |+..+ .+...-++|+ ++|
T Consensus 137 v~r~l--~gHtgylScC~f~dD~~-----ilT~S---------------GD~TCalWDi-----------------e~g~ 177 (343)
T KOG0286|consen 137 VSREL--AGHTGYLSCCRFLDDNH-----ILTGS---------------GDMTCALWDI-----------------ETGQ 177 (343)
T ss_pred eeeee--cCccceeEEEEEcCCCc-----eEecC---------------CCceEEEEEc-----------------ccce
Confidence 2 223 22333455667877776 66655 3345666777 445
Q ss_pred cceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 308 PVVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 308 ~~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
....+..+.+.+.+..++| |+++++-.+-+ ..-++||+..+...+. |+|
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD-----------~~aklWD~R~~~c~qt------------------F~g- 227 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD-----------KSAKLWDVRSGQCVQT------------------FEG- 227 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccc-----------cceeeeeccCcceeEe------------------ecc-
Confidence 4566777888899999999 99986644433 2467788877655332 332
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeC
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~dg~~l~~~~~~ 453 (771)
+...+..++|-|+|..+ .+.+.++..+||-+.. ..++....... ..+....||..|+.|++-+.+
T Consensus 228 hesDINsv~ffP~G~af-atGSDD~tcRlyDlRa-D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 228 HESDINSVRFFPSGDAF-ATGSDDATCRLYDLRA-DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cccccceEEEccCCCee-eecCCCceeEEEeecC-CcEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 22346788999999744 5666677778885543 23333333222 245667899999877765543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.4e-05 Score=79.33 Aligned_cols=294 Identities=14% Similarity=0.112 Sum_probs=158.3
Q ss_pred CCCCcceEE-EEEeechhhccc-ceeEEEEEEeecCCCCccceeecCCcc--cc-ccceEEEeCCCCCeEEEEecCCCCC
Q 004141 49 GNGNGTQAM-FSISQPNLLANK-RKKFMLSTVISKENENSVTFQWAPFPV--EM-TGASAVVPSPSGSKLLVVRNPENES 123 (771)
Q Consensus 49 ~s~dg~~v~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~-~~~~~~~~SPdG~~la~~~~~~~~~ 123 (771)
.||.-++|+ |+......+.++ ....+..||+.++- ..+ .|+. +. .--....||-|++++|=+....
T Consensus 257 fSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~-lkr-----sF~~~~~~~~~WP~frWS~DdKy~Arm~~~s--- 327 (698)
T KOG2314|consen 257 FSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL-LKR-----SFPVIKSPYLKWPIFRWSHDDKYFARMTGNS--- 327 (698)
T ss_pred cCCccceEEEecCCccccCcccCCCceEEEEEccccc-hhc-----ceeccCCCccccceEEeccCCceeEEeccce---
Confidence 356666544 444322222111 23567778885442 111 1221 11 1123478999999998664321
Q ss_pred CeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 124 PIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
-.+|+ . .. -.+.+. +-.+. .+..++|||-+..|||.......
T Consensus 328 isIyE--t-ps-f~lld~Kslki~-------gIr~FswsP~~~llAYwtpe~~~-------------------------- 370 (698)
T KOG2314|consen 328 ISIYE--T-PS-FMLLDKKSLKIS-------GIRDFSWSPTSNLLAYWTPETNN-------------------------- 370 (698)
T ss_pred EEEEe--c-Cc-eeeecccccCCc-------cccCcccCCCcceEEEEcccccC--------------------------
Confidence 12222 1 11 112221 11121 12589999999999997654321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee-eeeeeeccCCce
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPCA 281 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~ 281 (771)
....+-++.+.++...+.. --.+.....+.|-..|++ |.|-..+....+ .|.. .+-+
T Consensus 371 -------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f----~n~e 428 (698)
T KOG2314|consen 371 -------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQF----SNLE 428 (698)
T ss_pred -------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceE----eeEE
Confidence 1134455555555443331 112335567899999998 988776554332 2222 1236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|++++= ..-.. ...+-...+...+|-|.|.+++.++.... ...+-.+...+...
T Consensus 429 Ifrire-----------------KdIpv-e~velke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 429 IFRIRE-----------------KDIPV-EVVELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNIK 482 (698)
T ss_pred EEEeec-----------------cCCCc-eeeecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCCC
Confidence 776652 11111 11122345678899999999999987652 23344444443111
Q ss_pred -CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeE
Q 004141 362 -FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSL 439 (771)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~ 439 (771)
-.+.... +. .....+.|||.|+.+++.+-......|+-+|++-...+.+.... ......-
T Consensus 483 ~~~lVk~~---------------dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~ve 544 (698)
T KOG2314|consen 483 KPSLVKEL---------------DK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVE 544 (698)
T ss_pred chhhhhhh---------------cc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccce
Confidence 1111110 00 12346789999998888776655667888887644444443222 2345567
Q ss_pred EeecCCEEEEEEeCC
Q 004141 440 LTLDGDNIIAVSSSP 454 (771)
Q Consensus 440 ~s~dg~~l~~~~~~~ 454 (771)
|+|.|++++...+..
T Consensus 545 WDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSW 559 (698)
T ss_pred ECCCCCEEEEeeehh
Confidence 899999998777655
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=89.49 Aligned_cols=248 Identities=14% Similarity=0.117 Sum_probs=132.6
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCC-----CChhhhhcCCCCcc
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-----FGEEALQSLPGKVG 593 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~-----~g~~~~~~~~~~~~ 593 (771)
..+.+.++.|+.....++.|.+++.||...... ........++..++.++..+....++ +|............
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKE--QSLGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCcccccc--CcchHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 567888998886544478999999999665532 22226777888899988887511100 01000000000000
Q ss_pred -ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhhhhcCCC----CC--
Q 004141 594 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVGTTD----IP-- 663 (771)
Q Consensus 594 -~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~~~~~~~----~~-- 663 (771)
..........+..-........++....|.+.|+..+..++...+. ..+.++...+.-.......... ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 0000000000000000111223678888888888888877776542 2222222211111000000000 00
Q ss_pred -cchhhhh-ccCC-CCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 664 -DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 664 -~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
+...... +... ............ ...+...++...+.++. +|+|++||.+|..||..++..++...+.. +.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~ 265 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKL 265 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceE
Confidence 0000000 0000 000000111111 23355566667777777 69999999999999999999999988775 6788
Q ss_pred EEeCCCCccCCCCCCh--HHHHHHHHHHHHHhhC
Q 004141 740 IVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~L~ 771 (771)
+.+++++|........ .+.+..+.+||.++|.
T Consensus 266 ~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l~ 299 (299)
T COG1073 266 LFVPGGGHIDLYDNPPAVEQALDKLAEFLERHLL 299 (299)
T ss_pred EEecCCccccccCccHHHHHHHHHHHHHHHHhcC
Confidence 8899999987643333 3789999999999874
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-05 Score=88.95 Aligned_cols=208 Identities=14% Similarity=0.113 Sum_probs=120.4
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--ee
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QA 232 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~ 232 (771)
+..+.|||||++|+|..+.. +....+|+++|+.+|+. ..
T Consensus 129 l~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~ 169 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPEL 169 (686)
T ss_pred EeEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCcc
Confidence 35789999999999985543 22457999999998873 33
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce
Q 004141 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~ 310 (771)
+ +. . ...++|++||+. |+|+..... ..++.+||++++ .++ +.+
T Consensus 170 i---~~-~-~~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~ 214 (686)
T PRK10115 170 L---DN-V-EPSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDE 214 (686)
T ss_pred c---cC-c-ceEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCe
Confidence 3 11 1 246899999999 999886321 114468999998 555 344
Q ss_pred ecCCCC-cccc-ceeecCCCCEEEEEecCCCCCCCCccccccceeeec--CCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 311 NLTESI-SSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 311 ~lt~~~-~~~~-~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
.|.... .... +...|.||++++..+... ..+.+++++. .+++...+. ....+..
T Consensus 215 lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~---- 272 (686)
T PRK10115 215 LVYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVFL----------PRRKDHE---- 272 (686)
T ss_pred EEEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEEE----------ECCCCCE----
Confidence 454332 2122 333455999987555443 2356777764 222221111 1111110
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC-CeeEEEEEECC-CCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~-~~~~l~~~d~~-tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
| .....+..+++.++.+ ....|+.+++. .++.+.+...........+...++.|++....... +++++++
T Consensus 273 ~-------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~-~~l~~~~ 344 (686)
T PRK10115 273 Y-------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGL-TSLRQIN 344 (686)
T ss_pred E-------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCE-EEEEEEc
Confidence 1 1112235677777653 45578888887 46666666553322333445557777777655444 4466666
Q ss_pred ec
Q 004141 465 FV 466 (771)
Q Consensus 465 ~~ 466 (771)
..
T Consensus 345 ~~ 346 (686)
T PRK10115 345 RK 346 (686)
T ss_pred CC
Confidence 43
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-05 Score=80.50 Aligned_cols=250 Identities=13% Similarity=0.158 Sum_probs=141.1
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+..+.|||-|.+|+..-..+ ..+|-+..-.++-.. ..++ ..+.|||++++|+.-+..+...
T Consensus 213 etyv~wSP~GTYL~t~Hk~G------I~lWGG~~f~r~~RF~Hp~V----------q~idfSP~EkYLVT~s~~p~~~-- 274 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG------IALWGGESFDRIQRFYHPGV----------QFIDFSPNEKYLVTYSPEPIIV-- 274 (698)
T ss_pred eeeEEecCCceEEEEEeccc------eeeecCccHHHHHhccCCCc----------eeeecCCccceEEEecCCcccc--
Confidence 56789999999998776655 556754433333222 1233 4788999999998765443211
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc--cceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS--VGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~--~~~~~wspDg~~~~~~ 257 (771)
+|+ .....+|++||+.+|...+--.+..... -.-+.||.|+|.
T Consensus 275 ---------------------------~~~----d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy---- 319 (698)
T KOG2314|consen 275 ---------------------------EED----DNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKY---- 319 (698)
T ss_pred ---------------------------Ccc----cCCCceEEEEEccccchhcceeccCCCccccceEEeccCCce----
Confidence 011 1134799999999998766521221211 124689999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++-..- ..|-+++.+ +-. ...-+-....+....|||-+.-|||-..
T Consensus 320 ~Arm~~----------------~sisIyEtp-----------------sf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 320 FARMTG----------------NSISIYETP-----------------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred eEEecc----------------ceEEEEecC-----------------ceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 776541 134444321 000 0000112235778999999999999887
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS----- 411 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~----- 411 (771)
... +...++-++.+.+....+. ..+..+ +.-.+.|-.+|++|.+...+..
T Consensus 367 e~~------~~parvtL~evPs~~~iRt----~nlfnV---------------sDckLhWQk~gdyLcvkvdR~tK~~~~ 421 (698)
T KOG2314|consen 367 ETN------NIPARVTLMEVPSKREIRT----KNLFNV---------------SDCKLHWQKSGDYLCVKVDRHTKSKVK 421 (698)
T ss_pred ccc------CCcceEEEEecCccceeee----ccceee---------------eccEEEeccCCcEEEEEEEeecccccc
Confidence 652 2234566666666544221 111111 1224569999999998876432
Q ss_pred ----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE-eCCCCCCeEEE
Q 004141 412 ----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS-SSPVDVPQVKY 462 (771)
Q Consensus 412 ----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~-~~~~~p~~l~~ 462 (771)
+..|++++-..=-+..+.-.. .+-...|.|.|+.++... +......++|-
T Consensus 422 g~f~n~eIfrireKdIpve~velke-~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 422 GQFSNLEIFRIREKDIPVEVVELKE-SVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred ceEeeEEEEEeeccCCCceeeecch-heeeeeeccCCCeEEEEEccccccceeEEE
Confidence 224666654322233332222 234457889998876554 33333333443
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=77.86 Aligned_cols=122 Identities=18% Similarity=0.202 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--C------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p------~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+....+|+.+++..| +|+|+|.|+.++.++++.. . ..|+.+|+++++.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~---------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSK---------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcc----------------
Confidence 334446777787676 7999999999999998721 1 13677787777632100
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
. . .-..+...+++|.|-+.|+.|.++|...+..|++.+.++ .++..| +||.+..
T Consensus 152 -----------~--~--------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~Hp-ggH~VP~ 205 (230)
T KOG2551|consen 152 -----------K--L--------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEHP-GGHIVPN 205 (230)
T ss_pred -----------h--h--------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEecC-CCccCCC
Confidence 0 0 001223467899999999999999999999999998874 455554 5897754
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 004141 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl~~~L 770 (771)
.. ...+.+.+||...+
T Consensus 206 ~~---~~~~~i~~fi~~~~ 221 (230)
T KOG2551|consen 206 KA---KYKEKIADFIQSFL 221 (230)
T ss_pred ch---HHHHHHHHHHHHHH
Confidence 33 66788999988654
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.2e-05 Score=77.39 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=126.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+.+|+...+|.-. +++...+|.+..+...-.++.....+ .+..||.||.+||...
T Consensus 65 ~svFavsl~P~~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSV----------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSV----------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecC--CCceEEEEEccCCcceeEecCCCCce----------EEEEEccCceEEEecC-------
Confidence 5688899999666555321 11333344444333323333322233 5899999999888731
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~ 257 (771)
-...|.++...+|..+.. +. .-..+.-..|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 346789999988877665 33 2234667789998774
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.+ ..+.||.+.++ +.+..+.+..+...+..-.|+||||+|+-...+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44443 34579999983 336667777777778888999999999877655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+.++..... +.+.. .. -.+-..++.++..+ +..+.++ ..+.
T Consensus 212 g-----------ti~~Wn~ktg~p~~~---------~~~~e---~~------~~~~~~~~~~~~~~-~~g~~e~--~~~~ 259 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQPLHK---------ITQAE---GL------ELPCISLNLAGSTL-TKGNSEG--VACG 259 (399)
T ss_pred c-----------eEEEEecCCCceeEE---------ecccc---cC------cCCcccccccccee-EeccCCc--cEEE
Confidence 3 489999999865221 11111 00 01233455566533 4443333 3555
Q ss_pred EECCCCcEEEecC
Q 004141 418 VNVSSGELLRITP 430 (771)
Q Consensus 418 ~d~~tg~~~~l~~ 430 (771)
++..+|++.....
T Consensus 260 ~~~~sgKVv~~~n 272 (399)
T KOG0296|consen 260 VNNGSGKVVNCNN 272 (399)
T ss_pred EccccceEEEecC
Confidence 5666777776655
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.7e-06 Score=86.66 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=136.0
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+++...|.| .|..|+ +..-+..-.+|.+++.+...+.... ...+ ..++||+||+.++..+.+
T Consensus 215 kgvsai~~fp~~~hLlL--S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL--SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred cccchhhhccceeeEEE--ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc---
Confidence 5688899999 555443 3332355567777754444333322 2223 689999999999887544
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|-+||+++|++..- ...+..+.-+.+.||+..
T Consensus 280 -----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n--- 313 (503)
T KOG0282|consen 280 -----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN--- 313 (503)
T ss_pred -----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc---
Confidence 4678899999987665 344445677889999977
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
+++++- -+..|..+|+ .+++..+- -.+.+.+....|=++|++++..+
T Consensus 314 -~fl~G~--------------sd~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 314 -IFLVGG--------------SDKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred -EEEEec--------------CCCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 887762 3347999998 66765443 23456788899999999877766
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccc----------------------ee------eEEecccccCCCCCcccc
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK----------------------IV------DVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~----------------------~~------~~~~~~~~~~~~~f~g~~ 387 (771)
.+. .+.+|++...-....... .+ .+.+.....+...|.|..
T Consensus 362 Ddk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 362 DDK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred cCc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 553 244555444332211000 00 112222223334566655
Q ss_pred cCCC-CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 388 SSSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 388 ~~~~-~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..+. -.+.|||||++| ++.+ +...++.+|.+|-++.
T Consensus 431 vaGys~~v~fSpDG~~l-~SGd--sdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDGRTL-CSGD--SDGKVNFWDWKTTKLV 467 (503)
T ss_pred ccCceeeEEEcCCCCeE-Eeec--CCccEEEeechhhhhh
Confidence 4443 367899999966 4443 3445666676665544
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-05 Score=74.64 Aligned_cols=236 Identities=16% Similarity=0.169 Sum_probs=132.1
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..-.++.+| ++.-++|.+..+ ...+.++ .+++..+.+..+.+-| -++--.|||||++| |+.|...
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~L-ytTEnd~-- 72 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLL-YTTENDY-- 72 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEE-EEecccc--
Confidence 345678899 555555554433 3455556 5666665555444443 12467899999966 4444331
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~ 256 (771)
..++..|-|||... ..+++.. ....+..-++.|.|||+.
T Consensus 73 ------------------------------------~~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 73 ------------------------------------ETGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred ------------------------------------CCCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 12568899999983 3444421 233456678899999987
Q ss_pred EEEEEeecC---c----ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee--cCC--CCccccceee
Q 004141 257 YLVFVGWSS---E----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN--LTE--SISSAFFPRF 324 (771)
Q Consensus 257 ~l~~~~~~~---~----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~--lt~--~~~~~~~p~~ 324 (771)
|+.. |-. . ..++.+ .... ..|.++|. .+|++ .+ |.. +..+++..++
T Consensus 113 -LvVA-NGGI~Thpd~GR~kLNl--~tM~-psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 113 -LVVA-NGGIETHPDSGRAKLNL--DTMQ-PSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred -EEEE-cCCCccCcccCceecCh--hhcC-CceEEEec-----------------CCCceeeeeecCccccccceeeEEe
Confidence 7764 311 1 112211 1122 35777876 66653 33 533 4457999999
Q ss_pred cCCCCEEEEEecCCCCCCCCcccccc-ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
++||.- +|..+-. |+.....- |.+. ..++..++....... ...+. ..+.++++++||..+
T Consensus 171 ~~~G~V-~~a~Q~q----g~~~~~~PLva~~--~~g~~~~~~~~p~~~--------~~~l~----~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 171 DGDGTV-AFAMQYQ----GDPGDAPPLVALH--RRGGALRLLPAPEEQ--------WRRLN----GYIGSIAADRDGRLI 231 (305)
T ss_pred cCCCcE-EEEEecC----CCCCccCCeEEEE--cCCCcceeccCChHH--------HHhhC----CceEEEEEeCCCCEE
Confidence 999984 4444333 32222222 2222 222322111111000 00111 134578899999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCC
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
++++...+...+| |..+|++.....-
T Consensus 232 a~tsPrGg~~~~~--d~~tg~~~~~~~l 257 (305)
T PF07433_consen 232 AVTSPRGGRVAVW--DAATGRLLGSVPL 257 (305)
T ss_pred EEECCCCCEEEEE--ECCCCCEeecccc
Confidence 8888777766666 8889988766543
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.3e-06 Score=76.68 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=73.9
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
++++|+|.|+||+.|.+++.++. + .+|+++|.+....... ...+. ... +. .-.......+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~~-- 121 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFRE-- 121 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhhh--
Confidence 46999999999999999999874 3 4567788875432110 00111 000 11 001111122220
Q ss_pred cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 696 p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+-.-..+++..+.|++.+..++.+.+... .+..+.+|++|.|... .+.+..|++|++
T Consensus 122 ------~~p~r~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~f---e~~l~~I~~F~~ 178 (180)
T PRK04940 122 ------KNRDRCLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKNI---SPHLQRIKAFKT 178 (180)
T ss_pred ------cCcccEEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCCH---HHHHHHHHHHHh
Confidence 11234699999999999887776655432 2577899999988643 357888999985
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-06 Score=86.06 Aligned_cols=178 Identities=16% Similarity=0.243 Sum_probs=107.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..||.++...++.-.+...+...-+||++-|..+-... ..+.-=++.||.|+.+|.+| ++.+.. .+ +..
T Consensus 221 s~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEv----G~m~tP~~lgYsvLGwNhPG---FagSTG--~P--~p~ 289 (517)
T KOG1553|consen 221 SSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEV----GVMNTPAQLGYSVLGWNHPG---FAGSTG--LP--YPV 289 (517)
T ss_pred ecCCcchhheeecCCCCCCCCCceEEEEecCCccceEe----eeecChHHhCceeeccCCCC---ccccCC--CC--Ccc
Confidence 44566777766654322233445678888884432111 11222357899999999998 444321 11 223
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
++.+.+.+.+++.++.-....+.|.++|+|.||+.++++|..+|+ ++++|+.+.+-|+..+.- ...+.. +..
T Consensus 290 n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl-~rMP~~-----~~g- 361 (517)
T KOG1553|consen 290 NTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLAL-FRMPTF-----FSG- 361 (517)
T ss_pred cchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHh-hhchHH-----HHH-
Confidence 445666677888888766778999999999999999999999997 789998877655433211 111110 000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp 719 (771)
. -..........+-...+.+.+.|+++|--.+|+++.
T Consensus 362 -------i-V~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIit 398 (517)
T KOG1553|consen 362 -------I-VEHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIIT 398 (517)
T ss_pred -------H-HHHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhh
Confidence 0 001112222333334455667788888877777754
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-05 Score=83.21 Aligned_cols=238 Identities=13% Similarity=0.124 Sum_probs=147.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
-+.....|| ....+|+.... .+|+-. ..+....+.+.. .. ...+.|+++|++||...
T Consensus 178 fY~nlldWs-s~n~laValg~-----~vylW~~~s~~v~~l~~~~~~~----------vtSv~ws~~G~~LavG~----- 236 (484)
T KOG0305|consen 178 FYLNLLDWS-SANVLAVALGQ-----SVYLWSASSGSVTELCSFGEEL----------VTSVKWSPDGSHLAVGT----- 236 (484)
T ss_pred HhhhHhhcc-cCCeEEEEecc-----eEEEEecCCCceEEeEecCCCc----------eEEEEECCCCCEEEEee-----
Confidence 345667899 45566654332 255333 455656666653 22 26999999999999853
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
....+.+||....+-.+-........++..+|. +.
T Consensus 237 ---------------------------------------~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~---- 271 (484)
T KOG0305|consen 237 ---------------------------------------SDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SS---- 271 (484)
T ss_pred ---------------------------------------cCCeEEEEehhhccccccccCCcCceeEEEecc--Cc----
Confidence 346889999876654333112245678899998 22
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++-.+ .+...|..+|+. ...... .+..+...+-...|++||+++|-..
T Consensus 272 -~lssG--------------sr~~~I~~~dvR----------------~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 272 -VLSSG--------------SRDGKILNHDVR----------------ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred -eEEEe--------------cCCCcEEEEEEe----------------cchhhhhhhhcccceeeeeEECCCCCeeccCC
Confidence 44333 234467777762 111222 2556666788899999999988555
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
++ +.+++||....+.+....+.. ..+..++|+|=-+-|+.+........|
T Consensus 321 nD-----------N~~~Iwd~~~~~p~~~~~~H~-------------------aAVKA~awcP~q~~lLAsGGGs~D~~i 370 (484)
T KOG0305|consen 321 ND-----------NVVFIWDGLSPEPKFTFTEHT-------------------AAVKALAWCPWQSGLLATGGGSADRCI 370 (484)
T ss_pred Cc-----------cceEeccCCCccccEEEeccc-------------------eeeeEeeeCCCccCceEEcCCCcccEE
Confidence 44 458888874433321111111 123456788876668777654445567
Q ss_pred EEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 416 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
..+|..+|+...-......+....|++..+.|+.+.-.+.. +|-+.+.
T Consensus 371 ~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n--~i~lw~~ 418 (484)
T KOG0305|consen 371 KFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSEN--QITLWKY 418 (484)
T ss_pred EEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCC--cEEEEec
Confidence 77788888877766666678888999999998876643333 3444333
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00035 Score=70.45 Aligned_cols=264 Identities=15% Similarity=0.133 Sum_probs=142.3
Q ss_pred cceEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 100 GASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
-......||||+.++.... ..+++.+++.+|+...+ ...+.++.....-+ --.-..+..|+|||++++-.-
T Consensus 37 ~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~ 114 (342)
T PF06433_consen 37 FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNF 114 (342)
T ss_dssp SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEE
T ss_pred cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEcc
Confidence 3556788999999975432 23467789999965544 44445554311000 001247789999998876422
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
. ....+-|+|++.+++..- ++-..|..-+-+.++
T Consensus 115 T------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~-- 148 (342)
T PF06433_consen 115 T------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNR-- 148 (342)
T ss_dssp S------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETT--
T ss_pred C------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEEecCCC--
Confidence 2 237899999999987655 233333222222222
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecC---C--CCccccceeecC
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT---E--SISSAFFPRFSP 326 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt---~--~~~~~~~p~~Sp 326 (771)
+ +. + .|. ++.+..+.++ +.|+.. +.+ . ...-...|.++.
T Consensus 149 ~----F~--~-----------lC~--DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~ 193 (342)
T PF06433_consen 149 G----FS--M-----------LCG--DGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSR 193 (342)
T ss_dssp E----EE--E-----------EET--TSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEET
T ss_pred c----eE--E-----------Eec--CCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceEC
Confidence 1 22 1 253 3356666663 233322 211 1 112245677888
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCcccccCCCCCCccccCCCEEE
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
++.+++|.+... .+|..|+.+.+.... ....++... .++-.|| +....++.+..++||
T Consensus 194 ~~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 194 DGGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLY 253 (342)
T ss_dssp TTTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEE
T ss_pred CCCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEE
Confidence 888899998763 588899877653211 111111111 1233444 334567777777787
Q ss_pred EEeeeC-------CeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 405 LSSIWG-------SSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 405 ~~~~~~-------~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
+....+ ....||.+|+++++.. ++.... ......++.|.+=+++..+.. -..|+++|..+++
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~~--~~~l~v~D~~tGk 323 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSAG--DGTLDVYDAATGK 323 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEETT--TTEEEEEETTT--
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcCC--CCeEEEEeCcCCc
Confidence 765432 3457999999998755 443222 233466777877666655442 3568888876654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.6e-06 Score=82.07 Aligned_cols=111 Identities=18% Similarity=0.250 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhh----HHHHHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND----VLTAIDHVID 609 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~---~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D----~~~~i~~l~~ 609 (771)
+++||++.|.|+. ...|...+..|.+ ..|.|+++.+.|......... ...+......+| ..+.++.++.
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~--~~~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSK--FSPNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccc--ccCCCCccCHHHHHHHHHHHHHHHhh
Confidence 5789999998886 3456666666653 489999999998433222100 001111122333 3344444444
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCcc
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~ 651 (771)
.......++.|+|||.|+++++.++.+.+ ..+..+++..|.+
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 32114578999999999999999999988 6788888888864
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.1e-06 Score=83.73 Aligned_cols=211 Identities=14% Similarity=0.135 Sum_probs=121.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....||++|+.++-.+.+. .+.+|+ .|+.........-. .++.|.||+..++++..
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~---- 319 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGG---- 319 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEec----
Confidence 5688899999999998776654 667774 33333333332222 58999999987877632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~ 255 (771)
.+..|..||+.++++.+- ...+ ..+..+.|-++|++
T Consensus 320 ---------------------------------------sd~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 320 ---------------------------------------SDKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ---------------------------------------CCCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 346788888888875443 2222 24566778888887
Q ss_pred cEEEEEeecCccee----------------------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC
Q 004141 256 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 307 (771)
Q Consensus 256 ~~l~~~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 307 (771)
.+.++....-+- .++..|.+-...|+++.+.. .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 555543221000 11111112222333332200 00001
Q ss_pred cceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004141 308 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 308 ~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..++...+ .+......|||||++|+....+ ..++.|||.+-+........+
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~---------------- 474 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHD---------------- 474 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCC----------------
Confidence 11111111 3445678999999999876654 359999998866532221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.-.....|.|-....+++..++|...+|
T Consensus 475 ---~~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 475 ---QPCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ---cceEEEEecCCCcceeEecccCceeEec
Confidence 1133567888877778888888877665
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=83.25 Aligned_cols=196 Identities=16% Similarity=0.217 Sum_probs=108.9
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC
Q 004141 112 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 190 (771)
Q Consensus 112 ~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 190 (771)
.|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 344554442 34566777 4444455555434444 467899999986554 22
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...|.++|+.++++..- ........++++||||++ ++...+
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~~v~n~------- 97 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----VYVANY------- 97 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----EEEEEE-------
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----EEEEec-------
Confidence 25799999999886544 344456778999999996 654432
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCC-------CccccceeecCCCCEEEEEecCCCCCC
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 342 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~ 342 (771)
.+..+.++|. ++.+.. .+... ...+....-||+...+++.-.+.
T Consensus 98 -------~~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~---- 149 (369)
T PF02239_consen 98 -------EPGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT---- 149 (369)
T ss_dssp -------ETTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT----
T ss_pred -------CCCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC----
Confidence 2237888886 554432 23211 11234556688888766666553
Q ss_pred CCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004141 343 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 343 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.+|+++|......... ..+. -+.|+ ....|+||+++++...... ..+-.+|.++
T Consensus 150 ------~~I~vVdy~d~~~~~~--------~~i~---~g~~~-------~D~~~dpdgry~~va~~~s--n~i~viD~~~ 203 (369)
T PF02239_consen 150 ------GEIWVVDYSDPKNLKV--------TTIK---VGRFP-------HDGGFDPDGRYFLVAANGS--NKIAVIDTKT 203 (369)
T ss_dssp ------TEEEEEETTTSSCEEE--------EEEE-----TTE-------EEEEE-TTSSEEEEEEGGG--TEEEEEETTT
T ss_pred ------CeEEEEEeccccccce--------eeec---ccccc-------cccccCcccceeeeccccc--ceeEEEeecc
Confidence 4799998765432111 0010 12222 3557999999887665433 3777889988
Q ss_pred CcEEEec
Q 004141 423 GELLRIT 429 (771)
Q Consensus 423 g~~~~l~ 429 (771)
+++..+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8777654
|
... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-05 Score=86.10 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=138.4
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
+..++|.|||+.|.....++..+ .|......+.+...+. .-.-...+..+.+..+++..+..+.++....++..-+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir--~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIR--KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceE--EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCcccee
Confidence 36889999999776655444333 1221111011111110 00001112222234556667788888888887765331
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+...+++-+|+. +++.+. +..|-+++++ +++..+.+..
T Consensus 93 -~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~----------------D~s~~~~lrg 136 (933)
T KOG1274|consen 93 -ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD----------------DSSQEKVLRG 136 (933)
T ss_pred -eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc----------------ccchheeecc
Confidence 344556778899999998 998872 2357777763 5566777888
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
+.+.+....++|.|..||..+-+. .|.+||++++.......+.. ++..|- -......+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---------k~n~~~--~s~i~~~~ 194 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---------KDNEFI--LSRICTRL 194 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---------cccccc--ccceeeee
Confidence 888999999999999998887653 58899998766533222211 011111 11224578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC---CCceeeEEeecCCEEEEE
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~---~~~~~~~~s~dg~~l~~~ 450 (771)
+|+|+|.++++... ++. +..++.++.+...-.... ..+....|||.|++|++.
T Consensus 195 aW~Pk~g~la~~~~-d~~--Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs 250 (933)
T KOG1274|consen 195 AWHPKGGTLAVPPV-DNT--VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS 250 (933)
T ss_pred eecCCCCeEEeecc-CCe--EEEEccCCceeheeecccccccceEEEEEcCCCcEEeee
Confidence 99999887776653 333 444455566544332222 236678899998877654
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-05 Score=82.97 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=64.4
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch--HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH---
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI--- 608 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~--~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~--- 608 (771)
..++|.||.-.-.++..+-..|. ..+......|..|+.+-+.-.+. ..+.++|+..+....+
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 35678777654322222222232 23444446799888887654222 2335778776654333
Q ss_pred -HcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe-cCCcc
Q 004141 609 -DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 609 -~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~-~~p~~ 651 (771)
+.. -+..|..|+|.|.||+.++++|+.+|+.+.-+|+ .+|+.
T Consensus 133 ~~~h-p~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 133 AERH-PDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHhC-CCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 322 2334899999999999999999999999876654 44543
|
Their function is unknown. |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.2e-06 Score=82.82 Aligned_cols=240 Identities=10% Similarity=0.093 Sum_probs=150.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....||++|.+++-... ...+.+| ..-+..+.++.... +.+.+++|||...+++-.+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~-----gG~iKyWqpnmnnVk~~~ahh~--------eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDK-----GGMIKYWQPNMNNVKIIQAHHA--------EAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCC-----CceEEecccchhhhHHhhHhhh--------hhhheeccCCCCceeEEecCCCeEE
Confidence 34788999999999964322 2377778 33333344332111 1237999999888888877777554
Q ss_pred CCCccCCCCCCCCCCccCCCCC-CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWK-GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+........... ...|. ....|-|.-|...++.+.+-+-+||..+|....-. ....-.+..+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~--- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW--- 278 (464)
T ss_pred --EEeccCCchhheec-cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe---
Confidence 44433233333332 33333 45667777788888888888999999988754431 344557889999999987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ +++.+-++|+. .-.++.....+...+.+..|+|--..|.....
T Consensus 279 -Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg 326 (464)
T KOG0284|consen 279 -LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGG 326 (464)
T ss_pred -eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeecc
Confidence 88776 44567777871 12345556667777899999998877754443
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
-+ .+|..+.+...+....... .+...+-+++|.|=|. |+.+.+.+.....|
T Consensus 327 ~D----------gsvvh~~v~~~~p~~~i~~------------------AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw 377 (464)
T KOG0284|consen 327 SD----------GSVVHWVVGLEEPLGEIPP------------------AHDGEIWSLAYHPLGH-ILATGSNDRTVRFW 377 (464)
T ss_pred CC----------CceEEEeccccccccCCCc------------------ccccceeeeeccccce-eEeecCCCcceeee
Confidence 22 3466665553332211110 1222456788999996 66776666666666
Q ss_pred EEE
Q 004141 417 SVN 419 (771)
Q Consensus 417 ~~d 419 (771)
.-+
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 543
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.3e-06 Score=69.38 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=46.3
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~ 583 (771)
|.+|....+.|+. . ++.+|+++||.... ...|...++.|+++||.|+++|+|| +|.+
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~eh--~~ry~~~a~~L~~~G~~V~~~D~rG---hG~S 57 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGEH--SGRYAHLAEFLAEQGYAVFAYDHRG---HGRS 57 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHHH--HHHHHHHHHHHHhCCCEEEEECCCc---CCCC
Confidence 5678888998873 2 68999999996544 3368889999999999999999999 5554
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00014 Score=71.96 Aligned_cols=277 Identities=13% Similarity=0.022 Sum_probs=141.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....||-||.+||..--. +.-.+|.+..++....+...-.++ .-+.|.|-+..|++.+++...
T Consensus 107 DSVt~~~FshdgtlLATGdms--G~v~v~~~stg~~~~~~~~e~~di----------eWl~WHp~a~illAG~~DGsv-- 172 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMS--GKVLVFKVSTGGEQWKLDQEVEDI----------EWLKWHPRAHILLAGSTDGSV-- 172 (399)
T ss_pred CceEEEEEccCceEEEecCCC--ccEEEEEcccCceEEEeecccCce----------EEEEecccccEEEeecCCCcE--
Confidence 558889999999999863221 222233322333333332122222 588999999888887766542
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..|.......-+....+.....-..|.||+...+.+..+..|.+||+.++.+.............-...+.+|. +
T Consensus 173 Wmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~-----~ 247 (399)
T KOG0296|consen 173 WMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGS-----T 247 (399)
T ss_pred EEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccc-----e
Confidence 12222222222233334444456678899777777778899999999999865542111111122234445554 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---cccceeecCCCCEEEEEe
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~~p~~SpDG~~l~f~~ 335 (771)
++..+...... .+.+....+..+. ++..+.-...... ++.+..||.+=...|-.+
T Consensus 248 ~~~g~~e~~~~----~~~~~sgKVv~~~------------------n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 248 LTKGNSEGVAC----GVNNGSGKVVNCN------------------NGTVPELKPSQEELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred eEeccCCccEE----EEccccceEEEec------------------CCCCccccccchhhhhhhhhcccccccchhhccc
Confidence 44443222110 0111111222222 1101111111122 233334443322222222
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
. ...|.+||+.....+.+-..... +..+.|-+ ..+|+ ++..++ .+
T Consensus 306 v-----------dG~i~iyD~a~~~~R~~c~he~~--------------------V~~l~w~~-t~~l~-t~c~~g--~v 350 (399)
T KOG0296|consen 306 V-----------DGTIAIYDLAASTLRHICEHEDG--------------------VTKLKWLN-TDYLL-TACANG--KV 350 (399)
T ss_pred c-----------cceEEEEecccchhheeccCCCc--------------------eEEEEEcC-cchhe-eeccCc--eE
Confidence 2 34688999888776554433322 34556876 44454 443344 46
Q ss_pred EEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004141 416 ISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 416 ~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
+.+|..+|+++.. +.....+...+++++++.++.++
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 6668889987754 44444445567788887766554
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-05 Score=72.40 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh-hhhhhhcCCCCCCcceecCCCCcc
Q 004141 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA-SELELKESSSEDLPVVNLTESISS 318 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lt~~~~~ 318 (771)
..+..++|||++++ ++.++.... -.||-.|+.=...++ ..| ..+. ..|-...+.
T Consensus 279 saV~~~aFsn~S~r----~vtvSkDG~-------------wriwdtdVrY~~~qDpk~L-------k~g~-~pl~aag~~ 333 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTR----AVTVSKDGK-------------WRIWDTDVRYEAGQDPKIL-------KEGS-APLHAAGSE 333 (420)
T ss_pred hheeeeeeCCCcce----eEEEecCCc-------------EEEeeccceEecCCCchHh-------hcCC-cchhhcCCC
Confidence 35678899999999 998873221 134444431000011 111 1121 223223333
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
......||.|+.|+.... ..|.++...+|+... .|..+....+..++|++
T Consensus 334 p~RL~lsP~g~~lA~s~g------------s~l~~~~se~g~~~~------------------~~e~~h~~~Is~is~~~ 383 (420)
T KOG2096|consen 334 PVRLELSPSGDSLAVSFG------------SDLKVFASEDGKDYP------------------ELEDIHSTTISSISYSS 383 (420)
T ss_pred ceEEEeCCCCcEEEeecC------------CceEEEEcccCccch------------------hHHHhhcCceeeEEecC
Confidence 446789999998886553 348888776655421 12222334567889999
Q ss_pred CCCEEE
Q 004141 399 DGCTML 404 (771)
Q Consensus 399 Dg~~l~ 404 (771)
||++++
T Consensus 384 ~g~~~a 389 (420)
T KOG2096|consen 384 DGKYIA 389 (420)
T ss_pred CCcEEe
Confidence 999764
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=80.40 Aligned_cols=252 Identities=13% Similarity=0.107 Sum_probs=158.4
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcccee---ecCCccccccceEEEeCCCCCe
Q 004141 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ---WAPFPVEMTGASAVVPSPSGSK 112 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~~~~~~~~~SPdG~~ 112 (771)
+-..+..|.+ ||||.+++-. ...++|-+|+..++.- ...|. ...|-.-...+....||.|...
T Consensus 212 ~KSh~EcA~F----SPDgqyLvsg---------SvDGFiEVWny~~GKl-rKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 212 QKSHVECARF----SPDGQYLVSG---------SVDGFIEVWNYTTGKL-RKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred cccchhheee----CCCCceEeec---------cccceeeeehhccchh-hhhhhhhhhcceeecccceEEEeecccHHH
Confidence 3334444454 4588877643 2345666655533311 11111 1123222345788999999999
Q ss_pred EEEEecCCCCCCeEEEEecCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 113 LLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 113 la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
+|.-+.+ +.-.+|.+..+.-.++.-. ...++ .+++||.|+..|+..+.+.+.+ ..-...++.-+.
T Consensus 278 lAsGsqD--GkIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~tvR--iHGlKSGK~LKE 343 (508)
T KOG0275|consen 278 LASGSQD--GKIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQTVR--IHGLKSGKCLKE 343 (508)
T ss_pred hhccCcC--CcEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccceEE--EeccccchhHHH
Confidence 9865443 3444555544433333321 13344 5999999999999887765433 111223334455
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
...+.++.....|..|+...+....+..+-+|+..+++.... .+.+.+..+.++..-|.+.. -..+.
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe----h~iVC-------- 411 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE----HFIVC-------- 411 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc----eEEEE--------
Confidence 667888999999999988888888889999999988765332 12345556777777776654 33333
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC---ccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~---~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
|+...||++++ .+.-.+.++.+. +..-....||.|.+|+-+..+.
T Consensus 412 ------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~--------- 459 (508)
T KOG0275|consen 412 ------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG--------- 459 (508)
T ss_pred ------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc---------
Confidence 45668999998 556666666543 3456678999999998777653
Q ss_pred cccceeeecCCCCC
Q 004141 348 TDSLHRIDWPTNGN 361 (771)
Q Consensus 348 ~~~l~~~d~~~~~~ 361 (771)
.||-+...+|+.
T Consensus 460 --vlYCF~~~sG~L 471 (508)
T KOG0275|consen 460 --VLYCFSVLSGKL 471 (508)
T ss_pred --EEEEEEeecCce
Confidence 588888877775
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.2e-05 Score=71.27 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=115.4
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..+++..+..+.+||+.+|+.... ......+..+.|+++|.. ++++.... . ...+.|..+|+..
T Consensus 66 ~liTGSAD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----m------g~~~~v~~fdi~~ 129 (327)
T KOG0643|consen 66 HLITGSADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----M------GYTCFVSVFDIRD 129 (327)
T ss_pred eeeeccccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----c------CcceEEEEEEccC
Confidence 455677788999999999998777 566667888999999998 88876321 1 2334677777621
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
. .+...+.+ ...+......+....|+|-|+.|+....+ ..|-.||+.+|....-...
T Consensus 130 ~----------~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~-----------G~is~~da~~g~~~v~s~~- 187 (327)
T KOG0643|consen 130 D----------SSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED-----------GSISIYDARTGKELVDSDE- 187 (327)
T ss_pred C----------hhhhcccCceEEecCCccceeeeeecccCCEEEEecCC-----------CcEEEEEcccCceeeechh-
Confidence 0 00012333 44555555678899999999998865544 3588999888754211100
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEE
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~ 448 (771)
++...+..+++|+|.. .+++++.+....|+ |..+-++.+--.....+...+++|--+.++
T Consensus 188 -----------------~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~--D~~tl~v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 188 -----------------EHSSKINDLQFSRDRT-YFITGSKDTTAKLV--DVRTLEVLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred -----------------hhccccccccccCCcc-eEEecccCccceee--eccceeeEEEeeecccccceecccccceEE
Confidence 1223567889999986 44566656666666 554544443333333345566777666555
Q ss_pred EE
Q 004141 449 AV 450 (771)
Q Consensus 449 ~~ 450 (771)
+.
T Consensus 248 lg 249 (327)
T KOG0643|consen 248 LG 249 (327)
T ss_pred ec
Confidence 43
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-05 Score=72.31 Aligned_cols=176 Identities=14% Similarity=0.197 Sum_probs=116.2
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 131 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~ 131 (771)
+.++|+.+...|.++...+-+++++++....++..+...+ +++....|--..+.|+-..+. + ...+| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd--~---tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADD--K---TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccC--C---ceEEEEec
Confidence 4678988888899999999999999887766665554444 678888897777777654332 2 35556 3
Q ss_pred CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 132 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 132 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
.+...+.+.....+ .++..|+||+.|-.. .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 45555555655555 589999999966543 1
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
...|-.||..+=.+.+- ..-...+.+++.+|+-. ++..+ +....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaG--------------ged~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAG--------------GEDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEec--------------CcceEEEEEec----
Confidence 13455566655333222 12233467788999874 44433 23447888887
Q ss_pred chhhhhhhhcCCCCCCcceec--CCCCccccceeecCCCCEEE
Q 004141 292 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~ 332 (771)
.+++..-. ..+.+.+..++|||||..-+
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYA 283 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceee
Confidence 66665444 45667799999999998433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.8e-05 Score=73.89 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=97.5
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 147 (771)
..++.+++||+....-+. .+... .-..++|.|.|-.+|..... +.-.+|.+- -++.+-....+....+
T Consensus 119 S~D~tvrLWDlR~~~cqg-~l~~~-------~~pi~AfDp~GLifA~~~~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~- 187 (311)
T KOG1446|consen 119 SLDKTVRLWDLRVKKCQG-LLNLS-------GRPIAAFDPEGLIFALANGS--ELIKLYDLRSFDKGPFTTFSITDNDE- 187 (311)
T ss_pred ccCCeEEeeEecCCCCce-EEecC-------CCcceeECCCCcEEEEecCC--CeEEEEEecccCCCCceeEccCCCCc-
Confidence 345677777775332211 11111 23468999999766654332 234455555 3344444433332111
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 227 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 227 (771)
-.+..+.||||||.|+...+ ...++++|.=.
T Consensus 188 -----~ew~~l~FS~dGK~iLlsT~--------------------------------------------~s~~~~lDAf~ 218 (311)
T KOG1446|consen 188 -----AEWTDLEFSPDGKSILLSTN--------------------------------------------ASFIYLLDAFD 218 (311)
T ss_pred -----cceeeeEEcCCCCEEEEEeC--------------------------------------------CCcEEEEEccC
Confidence 12368999999999988633 35788899877
Q ss_pred Cceeec-cCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 228 GEVQAV-KGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 228 ~~~~~l-~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
|.+..- .+.+.. ....++.|+|||+. |+-.+ .++.|+++++ +
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ftPds~F----vl~gs---------------~dg~i~vw~~-----------------~ 262 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFTPDSKF----VLSGS---------------DDGTIHVWNL-----------------E 262 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEECCCCcE----EEEec---------------CCCcEEEEEc-----------------C
Confidence 775433 111111 12357899999995 54443 2346777777 5
Q ss_pred CCcce-ecCC-CCccccceeecCCCCEEEEEecC
Q 004141 306 DLPVV-NLTE-SISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 306 ~~~~~-~lt~-~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++..+ .+.. ..+.+..++|+|- +..|++..
T Consensus 263 tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~ 294 (311)
T KOG1446|consen 263 TGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSAS 294 (311)
T ss_pred CCcEeeEecCCCCCCccccccCCc--eeeeeecC
Confidence 55543 3333 3455777889994 45565544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=82.79 Aligned_cols=260 Identities=15% Similarity=0.155 Sum_probs=133.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---cceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+++.++-|.|.+++--+-. ..+.+|+ .| ..+..-.+ +...| .+..++|||.|..|+.++..
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h-------~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETH-------QINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred eEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCccccc-------ccceeeecCCCCeEEEEecC
Confidence 457888999999998753322 2344552 11 11111111 12222 23689999999999998755
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEecCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
...+ ++.+| |-.+..-...+-|+.|+.. |-+- .+....|.|+.
T Consensus 236 aqak-------------------------l~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia---------~lt~g~whP~~ 280 (641)
T KOG0772|consen 236 AQAK-------------------------LLDRD-GFEIVEFSKGDQYIRDMYNTKGHIA---------ELTCGCWHPDN 280 (641)
T ss_pred ccee-------------------------EEccC-CceeeeeeccchhhhhhhccCCcee---------eeeccccccCc
Confidence 4322 12233 2222222344555555432 2222 23345799999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCC--Cccccceeec
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES--ISSAFFPRFS 325 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~--~~~~~~p~~S 325 (771)
+. .+.++.. ++.|.+|++. +..+..++ ... .-.+.+..|+
T Consensus 281 k~----~FlT~s~--------------DgtlRiWdv~----------------~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 281 KE----EFLTCSY--------------DGTLRIWDVN----------------NTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred cc----ceEEecC--------------CCcEEEEecC----------------CchhheeEEeeccCCCcccCceeeecC
Confidence 98 6665522 2245555542 22221111 111 1246789999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|||+.||-.-.+. .|-.|+..+...... .. -++...+| ..+..+.||+||++| +
T Consensus 327 rdg~~iAagc~DG-----------SIQ~W~~~~~~v~p~-------~~----vk~AH~~g---~~Itsi~FS~dg~~L-l 380 (641)
T KOG0772|consen 327 RDGKLIAAGCLDG-----------SIQIWDKGSRTVRPV-------MK----VKDAHLPG---QDITSISFSYDGNYL-L 380 (641)
T ss_pred CCcchhhhcccCC-----------ceeeeecCCcccccc-------eE----eeeccCCC---CceeEEEeccccchh-h
Confidence 9999877544332 355555422111110 00 01122221 246788999999966 4
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEEEEEeCC--CCCCeEEEEEe
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNIIAVSSSP--VDVPQVKYGYF 465 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~dg~~l~~~~~~~--~~p~~l~~~~~ 465 (771)
+...++...+|-++.-..-+...+. .........|||+.+.|+.-.+.+ ..+..|++++.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 5555666667755432211111111 111224468999988777655444 34456777764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=86.88 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=97.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-c
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-K 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~ 234 (771)
..++++-+|++||+.+++...+ .....+.........+....-.+.|.|...-+.+...+..+++||++.+.+... +
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK--~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVK--LLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred eEEEEecCCcEEEeecCceeEE--EEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 5889999999999998776433 122222233334444555555677888755455566688999999998875443 2
Q ss_pred CCCC------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004141 235 GIPK------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 235 ~~~~------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
++.. ......++|+|+|.. +++..-++ .|-+++. ++.+
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~----la~~~~d~---------------~Vkvy~r-----------------~~we 221 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGT----LAVPPVDN---------------TVKVYSR-----------------KGWE 221 (933)
T ss_pred cCCccccccccceeeeeeecCCCCe----EEeeccCC---------------eEEEEcc-----------------CCce
Confidence 2221 224568999999887 88776322 3445544 3332
Q ss_pred -ceecCCC-Cc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 309 -VVNLTES-IS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 309 -~~~lt~~-~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...|... .. ......|||.|++||-...+ .+|.+||+++
T Consensus 222 ~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~-----------g~I~vWnv~t 263 (933)
T KOG1274|consen 222 LQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD-----------GQILVWNVDT 263 (933)
T ss_pred eheeecccccccceEEEEEcCCCcEEeeeccC-----------CcEEEEeccc
Confidence 2223222 11 26678999999999977665 3588898886
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-05 Score=79.84 Aligned_cols=148 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred chhhHHHHHHHHHHcCCCCC--CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh--c-CCCCCcchhhhh
Q 004141 596 DVNDVLTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--G-TTDIPDWCYVES 670 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~--~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~--~-~~~~~~~~~~~~ 670 (771)
.+-|++.|+.++..+..-.. -++.++|+|+||+++...+.-.|-.+.+++--++.+-..... + ..+...+.....
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~ 241 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGE 241 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccc
Confidence 34577788888877633233 489999999999999999988999999988766654321110 0 011000000000
Q ss_pred c--c-CCCCccCCCC--------CChhhHHHHhhc---Cc--ccccCCC--CCcEEEEeeCCCCccCcHHHHHHHHHHHh
Q 004141 671 Y--G-SKGKDSFTES--------PSVEDLTRFHSK---SP--ISHISKV--KTPTIFLLGAQDLRVPVSNGLQYARALRE 732 (771)
Q Consensus 671 ~--~-~~~~~~~~~~--------~~~~~~~~~~~~---sp--~~~~~~i--~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 732 (771)
+ . ......+... |..-..+.+.-. ++ +..-.+. ++-.+..|+..|+.+|.++-.++++.+++
T Consensus 242 ~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~~l~~ 321 (403)
T PF11144_consen 242 FFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYEILKN 321 (403)
T ss_pred ccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0000000000 000000111111 11 1111112 24466679999999999999999999999
Q ss_pred CCCCEEEEEeC
Q 004141 733 KGVETKVIVFP 743 (771)
Q Consensus 733 ~g~~~~~~~~~ 743 (771)
.|.+++++.+.
T Consensus 322 lgfda~l~lIk 332 (403)
T PF11144_consen 322 LGFDATLHLIK 332 (403)
T ss_pred cCCCeEEEEec
Confidence 99999999883
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0002 Score=74.96 Aligned_cols=252 Identities=15% Similarity=0.190 Sum_probs=140.9
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEEecCC
Q 004141 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPE 120 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~ 120 (771)
+| .|..|.|-...++... ..+..+++.........|.. .++....+||.+. .+|+..-..
T Consensus 128 ~W-~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 128 GW-VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred Cc-ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCC
Confidence 35 5666777666665442 35555555443322223322 3466777777644 566544444
Q ss_pred CCCCeEEEEecCC---cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 121 NESPIQFELWSQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 121 ~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
++......++.-. ....+-.-..-..+. -...|.+-|+-|+.++....++. ..+
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDkt----------------n~S 246 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDKT----------------NAS 246 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecCC----------------Ccc
Confidence 4666666666222 111111111111112 27889999999998875443221 111
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
|. +...||.++.++.....- ......+.++.|+|+|+. .+.+- |+
T Consensus 247 YY----------------GEq~Lyll~t~g~s~~V~--L~k~GPVhdv~W~~s~~E----F~Vvy--------Gf----- 291 (566)
T KOG2315|consen 247 YY----------------GEQTLYLLATQGESVSVP--LLKEGPVHDVTWSPSGRE----FAVVY--------GF----- 291 (566)
T ss_pred cc----------------ccceEEEEEecCceEEEe--cCCCCCceEEEECCCCCE----EEEEE--------ec-----
Confidence 11 237899999985444333 566778899999999998 65542 11
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
-+..+-++|+ .+..+-.+.+ +.-....|||-|+.|++..-.+ -..++-+||..
T Consensus 292 MPAkvtifnl-----------------r~~~v~df~e--gpRN~~~fnp~g~ii~lAGFGN--------L~G~mEvwDv~ 344 (566)
T KOG2315|consen 292 MPAKVTIFNL-----------------RGKPVFDFPE--GPRNTAFFNPHGNIILLAGFGN--------LPGDMEVWDVP 344 (566)
T ss_pred ccceEEEEcC-----------------CCCEeEeCCC--CCccceEECCCCCEEEEeecCC--------CCCceEEEecc
Confidence 1235556665 3333333333 3334578999999999887654 23467888877
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-----CCeeEEEEE
Q 004141 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-----GSSQVIISV 418 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-----~~~~~l~~~ 418 (771)
+-+ .+..-.. ..-.-+.|+|||.+++-++.. ++...||.+
T Consensus 345 n~K--~i~~~~a-------------------~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 345 NRK--LIAKFKA-------------------ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred chh--hcccccc-------------------CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 632 2221110 012345799999988765542 344456655
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=78.91 Aligned_cols=210 Identities=15% Similarity=0.146 Sum_probs=116.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.....++++||+.||....++ .+.+|+=.....+... ...|+.| ..+.|||||+.|++++.
T Consensus 146 ~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------- 206 (398)
T KOG0771|consen 146 QQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------- 206 (398)
T ss_pred cceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC-------
Confidence 346789999999999764433 5666631111111111 1223333 79999999999999832
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
....||++++|. +..+++...+.......|+-|+.+. .|
T Consensus 207 --------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~--~l 246 (398)
T KOG0771|consen 207 --------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQE--TL 246 (398)
T ss_pred --------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCCc--eE
Confidence 367889988883 3334222334456677888887331 12
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
...+...... +... +.+..++- .+-...++.......+.+...|+||+.++..+++.
T Consensus 247 ~laa~~~~~~--~v~~-----~~~~~w~~----------------~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 247 RLAASQFPGG--GVRL-----CDISLWSG----------------SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred EEEEecCCCC--ceeE-----EEeeeecc----------------ccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2222111100 0100 12222221 02234455555666789999999999999888764
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+-+++..+=+..++. |..+...+..+.|+||.+.+.- .+.+....+..+
T Consensus 304 -----------sVai~~~~~lq~~~~v------------------k~aH~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~l 353 (398)
T KOG0771|consen 304 -----------SVAIYDAKSLQRLQYV------------------KEAHLGFVTGLTFSPDSRYLAS-VSSDNEAAVTKL 353 (398)
T ss_pred -----------cEEEEEeceeeeeEee------------------hhhheeeeeeEEEcCCcCcccc-cccCCceeEEEE
Confidence 2555554332211111 1112224567889999987654 444556666666
Q ss_pred ECC
Q 004141 419 NVS 421 (771)
Q Consensus 419 d~~ 421 (771)
..+
T Consensus 354 ~vd 356 (398)
T KOG0771|consen 354 AVD 356 (398)
T ss_pred eec
Confidence 553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00014 Score=86.35 Aligned_cols=210 Identities=14% Similarity=0.109 Sum_probs=113.0
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceee-cCCCCeEEEEecCC
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~w-SpDg~~la~~~~~~ 174 (771)
..+...+|+| +|..|+..+... .+.+|+ .+.....+..... ..++.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~----------v~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTKAN----------ICCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecCCC----------eEEEEEeCCCCCEEEEEeC--
Confidence 5578899997 778776654432 556663 2222222221111 147788 457888887532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 36789999876542 233 2334467788897 676
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. |+..+ .+..|.++|+.... ..........+..+...+....|+|+|++|+
T Consensus 674 ~----lvs~s---------------~D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSS---------------TDNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEE---------------CCCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 66655 22356667762000 0001123345555555667789999999888
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
..+.+. .+++|+........ .........+....... ....+..++|++++..| ++...++.
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~--s~~~~~~~~~~~~~~~~----~~~~V~~v~ws~~~~~l-va~~~dG~ 786 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVL--SYKFKTIDPVSGLEVDD----ASQFISSVCWRGQSSTL-VAANSTGN 786 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceE--EEecccCCcccccccCC----CCcEEEEEEEcCCCCeE-EEecCCCc
Confidence 777553 47777755432110 00000000000000000 00124678899999865 45555666
Q ss_pred eEEEE
Q 004141 413 QVIIS 417 (771)
Q Consensus 413 ~~l~~ 417 (771)
..||.
T Consensus 787 I~i~~ 791 (793)
T PLN00181 787 IKILE 791 (793)
T ss_pred EEEEe
Confidence 66663
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.7e-05 Score=80.98 Aligned_cols=90 Identities=14% Similarity=0.241 Sum_probs=63.3
Q ss_pred hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 556 SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 556 ~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.++.++|..|++++.++.. .+.. ..++.....+.+..+++.+.+.. ..++|-++|+|.||.+...+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~nPd-~~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRNPD-ASLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccCch-Hhhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 45788999999999999988632 1111 11222223466677888877763 3478999999999999999988
Q ss_pred hCCCc-eeEEEecCCccch
Q 004141 636 QAPDK-FVAAAARNPLCNL 653 (771)
Q Consensus 636 ~~p~~-~~~~v~~~p~~~~ 653 (771)
.++.+ ++.++......|+
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 88776 7777665554443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00095 Score=68.16 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=98.9
Q ss_pred eEEEEEccCCce-eeccCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 219 SLFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 219 ~l~v~d~~~~~~-~~l~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+++++++.+.. +.+..... ..........|||. ++|..-.... .+... ......||+++.
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p------- 150 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP------- 150 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC-------
Confidence 345555555554 44421111 12455678899987 8887643100 01100 012237999985
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.++..+.+..........+|||||++|++..... ..|+++++..... .+... . ..
T Consensus 151 ----------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~-~---~~ 205 (307)
T COG3386 151 ----------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR-R---GF 205 (307)
T ss_pred ----------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc-c---eE
Confidence 5555555555566678899999999998887653 5799998864111 11110 0 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSS 453 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~dg~~l~~~~~~ 453 (771)
+... ..+| .....+.-.||. |+.... .+...+-+++.+...+..+..+......+.| .++.+.|++++..
T Consensus 206 ~~~~---~~~G----~PDG~~vDadG~-lw~~a~-~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 206 VDFD---EEPG----LPDGMAVDADGN-LWVAAV-WGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEcc---CCCC----CCCceEEeCCCC-EEEecc-cCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 1000 0111 122344444554 333322 2224566777774445555544333333444 4567888877766
Q ss_pred CCCC
Q 004141 454 PVDV 457 (771)
Q Consensus 454 ~~~p 457 (771)
...+
T Consensus 277 ~~~~ 280 (307)
T COG3386 277 SGMS 280 (307)
T ss_pred CCCC
Confidence 6555
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=75.97 Aligned_cols=209 Identities=13% Similarity=0.090 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHH-HCCc----EEEEECCCCCCCCChhhhh----c----CCC-Cc---cccchhhH
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEALQ----S----LPG-KV---GSQDVNDV 600 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la-~~G~----~Vv~~d~rG~~~~g~~~~~----~----~~~-~~---~~~~~~D~ 600 (771)
-..||+||..++ ...+..++..+. +.|. .++.++--|.-.+...+.. . ... +. ......-+
T Consensus 12 tPTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 12 TPTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp EEEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CcEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 447899996655 557888888886 6664 2444444443222111110 0 011 11 11123446
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
..++.+|.++..+ +++-++||||||..++.++..+.. .+..+|.+++.++...... ..... .....
T Consensus 90 ~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~--~~~~~---~~~~~-- 160 (255)
T PF06028_consen 90 KKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMN--DDQNQ---NDLNK-- 160 (255)
T ss_dssp HHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCS--C-TTT---T-CST--
T ss_pred HHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccccc--ccchh---hhhcc--
Confidence 6777888887644 789999999999999999887521 3555565555444221100 00000 00000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 004141 676 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 745 (771)
Q Consensus 676 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~ 745 (771)
.+ |. ......+...- ...+ .-.+.+|-|.|. .|..||...++.+...++......+-..+.| +
T Consensus 161 ----~g-p~~~~~~y~~l~~~~-~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a 233 (255)
T PF06028_consen 161 ----NG-PKSMTPMYQDLLKNR-RKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDA 233 (255)
T ss_dssp ----T--BSS--HHHHHHHHTH-GGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGG
T ss_pred ----cC-CcccCHHHHHHHHHH-HhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCC
Confidence 00 11 11111111110 0011 123679999998 8999999999988888877666666666665 5
Q ss_pred CccCCCCCChHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl 766 (771)
.|.-. +++. ++.+.|..||
T Consensus 234 ~HS~L-heN~-~V~~~I~~FL 252 (255)
T PF06028_consen 234 QHSQL-HENP-QVDKLIIQFL 252 (255)
T ss_dssp SCCGG-GCCH-HHHHHHHHHH
T ss_pred ccccC-CCCH-HHHHHHHHHh
Confidence 78644 3443 6777787776
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00024 Score=63.79 Aligned_cols=139 Identities=12% Similarity=0.088 Sum_probs=90.8
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.....+|..+.+...+... ++.++|++||.|+.++++++.+....++++++.+|.---...
T Consensus 38 w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~--------------- 99 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE--------------- 99 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc---------------
Confidence 44445778777776555442 455999999999999999998776689999998886311000
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.........+|.. ..++.-|.++++..+|+.+++++++.+.+++-. .++...++||....
T Consensus 100 --------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~ 159 (181)
T COG3545 100 --------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAE 159 (181)
T ss_pred --------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchh
Confidence 0000111111211 123345899999999999999999999988865 57788888995432
Q ss_pred --CCChHHHHHHHHHHHHH
Q 004141 752 --PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 --~~~~~~~~~~i~~fl~~ 768 (771)
.....+.+..+..++.+
T Consensus 160 sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 160 SGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred hcCCCcHHHHHHHHHHhhh
Confidence 23333445555555543
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=98.11 E-value=4e-05 Score=70.52 Aligned_cols=180 Identities=18% Similarity=0.249 Sum_probs=103.8
Q ss_pred EEEEEcC-CCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 539 LIVVLHG-GPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 539 ~vv~~HG-g~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
++|++-| |++. .+ ...+..|+++|+.|+.+|-.- | +. ..+...+...|+.+.+++..++ ...+
T Consensus 4 ~~v~~SGDgGw~----~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~ 68 (192)
T PF06057_consen 4 LAVFFSGDGGWR----DLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRAR--WGRK 68 (192)
T ss_pred EEEEEeCCCCch----hhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHH--hCCc
Confidence 5677777 3332 33 346778999999999999542 1 11 1222334477888888877776 3568
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
++.|+|+|+|+-+.-.+..+.|. +++.+++.+|......-. ...+|. +. .... .
T Consensus 69 ~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFei---hv~~wl-----g~---------~~~~-----~ 126 (192)
T PF06057_consen 69 RVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEI---HVSGWL-----GM---------GGDD-----A 126 (192)
T ss_pred eEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEE---Ehhhhc-----CC---------CCCc-----c
Confidence 99999999999888777776664 577788877753211000 000110 10 0000 0
Q ss_pred hcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 693 SKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 693 ~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+...+.++. .|++.|+|++|.-. +...++. ..++.+..||+.| |... -....+.|++-++
T Consensus 127 ~~~~~pei~~l~~~~v~CiyG~~E~d~-------~cp~l~~--~~~~~i~lpGgHH-fd~d--y~~La~~Il~~l~ 190 (192)
T PF06057_consen 127 AYPVIPEIAKLPPAPVQCIYGEDEDDS-------LCPSLRQ--PGVEVIALPGGHH-FDGD--YDALAKRILDALK 190 (192)
T ss_pred cCCchHHHHhCCCCeEEEEEcCCCCCC-------cCccccC--CCcEEEEcCCCcC-CCCC--HHHHHHHHHHHHh
Confidence 011223344554 58999999988652 2222443 2478889988544 5422 2234455555443
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0021 Score=64.18 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=124.4
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec
Q 004141 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS 131 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~ 131 (771)
++.-|+|..+-. .+++++|..+. +..+....+ ...---..-+|||||++|+...+.-+....++-+|+
T Consensus 16 ~~~avafaRRPG--------~~~~v~D~~~g--~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 16 RPEAVAFARRPG--------TFALVFDCRTG--QLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred CCeEEEEEeCCC--------cEEEEEEcCCC--ceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 566777765432 36666665322 333222222 111113367999999998555444345566777773
Q ss_pred -CCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 132 -QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 132 -~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
....+++-..+. +.| .+.|.|||+.|+.. +......|.. ++
T Consensus 84 ~~~~~~ri~E~~s~GIGPH----------el~l~pDG~tLvVA-NGGI~Thpd~-------GR----------------- 128 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPH----------ELLLMPDGETLVVA-NGGIETHPDS-------GR----------------- 128 (305)
T ss_pred CcCCcEEEeEecCCCcChh----------hEEEcCCCCEEEEE-cCCCccCccc-------Cc-----------------
Confidence 334555544432 333 78899999988764 3221111100 00
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCC---CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 208 WGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.++.....++.|..+|..+|++..--..+ ...++..++|.+||. ++|.....++.. ....-|..
T Consensus 129 -~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~-----V~~a~Q~qg~~~-------~~~PLva~ 195 (305)
T PF07433_consen 129 -AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT-----VAFAMQYQGDPG-------DAPPLVAL 195 (305)
T ss_pred -eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc-----EEEEEecCCCCC-------ccCCeEEE
Confidence 01222335689999999999853321022 345889999999997 555443222211 11223444
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPVVNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
.+. ++..+.+. .-.+.+.+.++++||..++.++.+. ..+.+||..
T Consensus 196 ~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----------g~~~~~d~~ 247 (305)
T PF07433_consen 196 HRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----------GRVAVWDAA 247 (305)
T ss_pred EcC------------------CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----------CEEEEEECC
Confidence 432 22222222 1235688999999999998888763 457778888
Q ss_pred CCCC
Q 004141 358 TNGN 361 (771)
Q Consensus 358 ~~~~ 361 (771)
++..
T Consensus 248 tg~~ 251 (305)
T PF07433_consen 248 TGRL 251 (305)
T ss_pred CCCE
Confidence 8775
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=69.22 Aligned_cols=215 Identities=12% Similarity=0.064 Sum_probs=114.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCC-Ce--EEEEecC------CcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENES-PI--QFELWSQ------SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~-~~--~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+....||++|.++++..+..-+. +. ++.+... .++...+..+... ....-|+|-|+.|++.
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk---------it~a~Wg~l~~~ii~G 165 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK---------ITSALWGPLGETIIAG 165 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc---------eeeeeecccCCEEEEe
Confidence 467788999999999887654222 22 3333311 1222223322221 1477899999999885
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
- ....|-.||+.+|+...-........+....+|||
T Consensus 166 h--------------------------------------------e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d 201 (327)
T KOG0643|consen 166 H--------------------------------------------EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRD 201 (327)
T ss_pred c--------------------------------------------CCCcEEEEEcccCceeeechhhhccccccccccCC
Confidence 2 33678889998885443321333447889999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
... .+..+ ++..-.++|. .+-++..-......+...++||--..
T Consensus 202 ~T~----FiT~s---------------~Dttakl~D~-----------------~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 202 RTY----FITGS---------------KDTTAKLVDV-----------------RTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred cce----EEecc---------------cCccceeeec-----------------cceeeEEEeeecccccceecccccce
Confidence 986 55444 2223344454 23333222223445677889998777
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
++.....+ -+|+.|...+. -.-......++-.++-+...|.+ .-+.+++++|||+ .|.+...+
T Consensus 246 VilgGGqe--------------A~dVTTT~~r~-GKFEArFyh~i~eEEigrvkGHF-GPINsvAfhPdGk-sYsSGGED 308 (327)
T KOG0643|consen 246 VILGGGQE--------------AMDVTTTSTRA-GKFEARFYHLIFEEEIGRVKGHF-GPINSVAFHPDGK-SYSSGGED 308 (327)
T ss_pred EEecCCce--------------eeeeeeecccc-cchhhhHHHHHHHHHhccccccc-cCcceeEECCCCc-ccccCCCC
Confidence 76554332 12222211110 00000000111111111112211 1367899999998 66666667
Q ss_pred CeeEEEEEEC
Q 004141 411 SSQVIISVNV 420 (771)
Q Consensus 411 ~~~~l~~~d~ 420 (771)
+..+|..++.
T Consensus 309 G~VR~h~Fd~ 318 (327)
T KOG0643|consen 309 GYVRLHHFDS 318 (327)
T ss_pred ceEEEEEecc
Confidence 7777776653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=77.10 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=87.0
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|-+||+.+++.+.-. ......+.+++|||||++ ++.+. .+..|+++..
T Consensus 698 yd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~AWSpdGr~----~AtVc---------------KDg~~rVy~P-------- 749 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLYSRL-VGHTDQIFGIAWSPDGRR----IATVC---------------KDGTLRVYEP-------- 749 (1012)
T ss_pred ccceeeeeehhhhhhhhee-ccCcCceeEEEECCCCcc----eeeee---------------cCceEEEeCC--------
Confidence 4578999999988754321 344557889999999999 99887 3346777774
Q ss_pred hhhhhcCCCCCCcceecCCCCc----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLTESIS----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.++ .+++.++.+ ......|.=||+.|+....+. ....+|-+||.++-....+....-++
T Consensus 750 ---------rs~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk-------~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 750 ---------RSR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK-------SSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ---------CCC-CCccccCCCCccCcceeEEEEecCcEEEEecccc-------cchhhhhhhhhhhccCCcceeeeecc
Confidence 222 233443333 245678999999998887775 34567888887664433332222111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.+ +.--+.+-+|...|+++...+....+|.+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEEe
Confidence 11 22234566788877665443333344433
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00027 Score=73.20 Aligned_cols=151 Identities=15% Similarity=0.152 Sum_probs=103.0
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC-CccchhhhhcC--CCCC-cchh-hhhccCCCCccCCCCCC
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT--TDIP-DWCY-VESYGSKGKDSFTESPS 684 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~-p~~~~~~~~~~--~~~~-~~~~-~~~~~~~~~~~~~~~~~ 684 (771)
...++.++.+|.|.|==|+.+...++ ..++++|++... ++.++...... .... .|.+ ...|...+..... ..
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l--~t 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQL--DT 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhc--CC
Confidence 34567899999999999999988888 467888877432 33333211100 0000 1110 0111111111111 22
Q ss_pred hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004141 685 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 685 ~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
.+......-.+|+.+.++++.|-||+.|..|++..+..+.-++..|.. +..+.++|+++|.+.. .+..+.+..
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~~ 315 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLRA 315 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHHH
Confidence 344455667789999999999999999999999999999999999975 4688999999998875 577888999
Q ss_pred HHHHhh
Q 004141 765 WFKKYC 770 (771)
Q Consensus 765 fl~~~L 770 (771)
|+...+
T Consensus 316 f~~~~~ 321 (367)
T PF10142_consen 316 FYNRIQ 321 (367)
T ss_pred HHHHHH
Confidence 988754
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00043 Score=67.20 Aligned_cols=236 Identities=15% Similarity=0.147 Sum_probs=127.3
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 146 (771)
...+.+..||+.+-+ -.+-| ......+...+||+||++|+..+... ...+| ..|...+.+.++..+
T Consensus 42 c~nG~vvI~D~~T~~-iar~l-----saH~~pi~sl~WS~dgr~LltsS~D~-----si~lwDl~~gs~l~rirf~spv- 109 (405)
T KOG1273|consen 42 CANGRVVIYDFDTFR-IARML-----SAHVRPITSLCWSRDGRKLLTSSRDW-----SIKLWDLLKGSPLKRIRFDSPV- 109 (405)
T ss_pred ccCCcEEEEEccccc-hhhhh-----hccccceeEEEecCCCCEeeeecCCc-----eeEEEeccCCCceeEEEccCcc-
Confidence 344566666664432 12222 22234588999999999998766543 34445 344455555555544
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
....|.|-.+..+.+.-.. ..-+++++.
T Consensus 110 ---------~~~q~hp~k~n~~va~~~~-------------------------------------------~sp~vi~~s 137 (405)
T KOG1273|consen 110 ---------WGAQWHPRKRNKCVATIME-------------------------------------------ESPVVIDFS 137 (405)
T ss_pred ---------ceeeeccccCCeEEEEEec-------------------------------------------CCcEEEEec
Confidence 4778888655554443221 113445554
Q ss_pred CCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 227 SGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 227 ~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
.++-+.|. ...+ .......|.+-|+. |+... ..+.|..+|.
T Consensus 138 ~~~h~~Lp-~d~d~dln~sas~~~fdr~g~y----IitGt---------------sKGkllv~~a--------------- 182 (405)
T KOG1273|consen 138 DPKHSVLP-KDDDGDLNSSASHGVFDRRGKY----IITGT---------------SKGKLLVYDA--------------- 182 (405)
T ss_pred CCceeecc-CCCccccccccccccccCCCCE----EEEec---------------CcceEEEEec---------------
Confidence 44444442 1111 12222357777885 55432 2235667775
Q ss_pred CCCCCcce---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC---CC-CCCCCc--cceeeEEe
Q 004141 303 SSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP---TN-GNFSSL--EKIVDVIP 373 (771)
Q Consensus 303 ~~~~~~~~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~---~~-~~~~~~--~~~~~~~~ 373 (771)
.+-+++ +++. -..+.+..+|-.|+.|++...+. -|..++.. .. ....++ ....+++.
T Consensus 183 --~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 183 --ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred --chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 443321 2222 23477889999999998877664 24444432 11 111111 01111111
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
-. .=...+||.||.+++..+ .....||.+....|.+.++..+..
T Consensus 249 k~--------------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 249 KL--------------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred hh--------------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCCc
Confidence 00 012567899999887665 344569999988999998876543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00028 Score=70.60 Aligned_cols=175 Identities=17% Similarity=0.107 Sum_probs=98.1
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
..+++||||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 6899999999999997221 346888887654443333
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
.. .....|+|+++|. +.++...... ..++..+.. .......+...
T Consensus 64 -~g-~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~~~~~----------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -TG-GSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVRDSAS----------------GTGEPVEVDWP 108 (253)
T ss_pred -cC-CccccccccCCCC-----EEEEEcCCCc------------eEEEEecCC----------------CcceeEEeccc
Confidence 22 2677899999965 5555421111 112221110 11222223222
Q ss_pred C--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC---CCCccceeeEEecccccCCCCCcccccCC
Q 004141 316 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN---FSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
. ..+.+.++||||.+++++..... ..+|++.-+..+.. ..+.... .+ ... . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~~--------~~~v~va~V~r~~~g~~~~l~~~~-~~---~~~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDGG--------GGRVYVAGVVRDGDGVPRRLTGPR-RV---APP----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecCC--------CCeEEEEEEEeCCCCCcceeccce-Ee---ccc----c-----cCc
Confidence 1 16889999999999999997751 35677765532222 1221111 10 000 0 012
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
...+.|++++..+++....+..... .+..+++..+.+..
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578999999866555544443333 46666777777633
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00014 Score=71.85 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=112.8
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+.++|-....+..|+ ......+..++|-|-+.. -+.++= +.|+ -||..+-..
T Consensus 118 nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsas----elavgC-----r~gI--------ciW~~s~tl------ 173 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSAS----ELAVGC-----RAGI--------CIWSDSRTL------ 173 (445)
T ss_pred cCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcc----eeeeee-----ccee--------EEEEcCccc------
Confidence 4567777887766666663 344456788999998876 444441 1111 244444210
Q ss_pred hhhhhcCC-CCCCcceecCCCC--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 296 ELELKESS-SEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 296 ~~~~~~~~-~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++. .-. .-+...-++..+. ..+.+.+|.+||..|+-.+-.+ ..|.+||.+++...++...
T Consensus 174 n~~--r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs----------ssi~iWdpdtg~~~pL~~~----- 236 (445)
T KOG2139|consen 174 NAN--RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS----------SSIMIWDPDTGQKIPLIPK----- 236 (445)
T ss_pred ccc--cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc----------ceEEEEcCCCCCccccccc-----
Confidence 000 000 0011111222222 3488999999999998777543 5799999999887665311
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
.. .+...+.|||||..| |.+..+....||.-+.. -..++.....+.+....|+|+|..|+|+.+
T Consensus 237 ---------gl-----gg~slLkwSPdgd~l-faAt~davfrlw~e~q~-wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 237 ---------GL-----GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQS-WTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ---------CC-----CceeeEEEcCCCCEE-EEecccceeeeehhccc-ceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 00 134467899999966 45555666778743321 112222222334555689999999999987
Q ss_pred CCCCCCeEEEEEeccc
Q 004141 453 SPVDVPQVKYGYFVDK 468 (771)
Q Consensus 453 ~~~~p~~l~~~~~~~~ 468 (771)
.. +.||...+..+
T Consensus 301 gs---p~lysl~f~~~ 313 (445)
T KOG2139|consen 301 GS---PRLYSLTFDGE 313 (445)
T ss_pred CC---ceEEEEeecCC
Confidence 44 56887776543
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=90.43 Aligned_cols=126 Identities=24% Similarity=0.292 Sum_probs=82.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc--hHHHHHHHHCCcEEEEECCC-CCCCCChhhhhcCCCCccccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~--~~~~~~la~~G~~Vv~~d~r-G~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..-+|.|......+ .|++|++|||+...... .+ ......+..+..+|+.++|| |.-|+....-...++++ .
T Consensus 97 LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN~---g 172 (545)
T KOG1516|consen 97 LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGNL---G 172 (545)
T ss_pred ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCcc---c
Confidence 455688887432223 89999999987654432 12 22333455667999999999 33222222111223444 3
Q ss_pred hhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCc
Q 004141 597 VNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~ 650 (771)
..|+..|++|+.++ ..-|+++|.|+|||.||..+..++... ..+|..+|..++.
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGN 231 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhccc
Confidence 67999999999875 346999999999999999998776531 2466666666654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00082 Score=70.50 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=88.7
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccce
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p 322 (771)
+..|.+-|.. |+..+..+- .+.+-. +-....||.+++ ++... +.|. ..+.+.+.
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999988 766542221 122222 234568999998 53333 3333 46678999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
.|||+|+.++.+..-- ...+-++|+...-...+.++. ....-|+|.|+.
T Consensus 277 ~W~~s~~EF~VvyGfM---------PAkvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVYGFM---------PAKVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEEecc---------cceEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999887666321 234666676553221111111 134569999998
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeC
Q 004141 403 MLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~ 453 (771)
|++..-..=...+-.+|+.+ .+.|.... .+-....|+|||.+++.+..+
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEecc
Confidence 77765433223344446654 33343322 234567899999999876544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=75.18 Aligned_cols=214 Identities=11% Similarity=0.088 Sum_probs=127.1
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcc--ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE--ecCCcc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 145 (771)
.++.+.+|++...+.+. .+ +.+++ ..+.+..-..+|||+.|++-.+ ...+.||+-..+...+ .++...
T Consensus 438 GkgcVKVWdis~pg~k~-Pv--sqLdcl~rdnyiRSckL~pdgrtLivGGe-----astlsiWDLAapTprikaeltssa 509 (705)
T KOG0639|consen 438 GKGCVKVWDISQPGNKS-PV--SQLDCLNRDNYIRSCKLLPDGRTLIVGGE-----ASTLSIWDLAAPTPRIKAELTSSA 509 (705)
T ss_pred CCCeEEEeeccCCCCCC-cc--ccccccCcccceeeeEecCCCceEEeccc-----cceeeeeeccCCCcchhhhcCCcc
Confidence 44567777775554321 11 11221 1245777889999999986432 3345566322221111 111110
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
. ....++.|||.| |.|......+- ..|+.-.......++.+..-..-+..+.|+-.++++.-++.+.-||+
T Consensus 510 p-------aCyALa~spDak-vcFsccsdGnI-~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 510 P-------ACYALAISPDAK-VCFSCCSDGNI-AVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred h-------hhhhhhcCCccc-eeeeeccCCcE-EEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhh
Confidence 0 114778999986 77766433221 13443222222223333332334456667667778888899999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
..+....- ..-...+.++..+|.|.+ |+..- .+++++++.. .
T Consensus 581 regrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------s 622 (705)
T KOG0639|consen 581 REGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------S 622 (705)
T ss_pred hhhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------C
Confidence 87643222 233346788899999999 87643 3457888886 5
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.-+|.-++..+.+..|++-|++++-+..++
T Consensus 623 kp~kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 623 KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred CccceeecccccEEEEEEecccCceeeecCchh
Confidence 556677888888899999999999877666554
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0014 Score=71.02 Aligned_cols=270 Identities=11% Similarity=0.063 Sum_probs=146.4
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
++.....+....+|.|...++-.++ .-+.+| +..+..+.+.+. .+ -+..|=|.++.|+...
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~------~SikiWn~~t~kciRTi~~~-y~----------l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAG------ESIKIWNRDTLKCIRTITCG-YI----------LASKFVPGDRYIVLGT 431 (888)
T ss_pred eccchhheeEEEeecCceeeeecCC------CcEEEEEccCcceeEEeccc-cE----------EEEEecCCCceEEEec
Confidence 3445567888999988765543222 235667 223333433332 33 3777889888887765
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-----CCceee-cc-----CCCCCC
Q 004141 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-----SGEVQA-VK-----GIPKSL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-----~~~~~~-l~-----~~~~~~ 240 (771)
..+... .++......-.....+..-.......+|..-.+++..+..+-.||.. .|..++ |. -..-+.
T Consensus 432 k~Gel~--vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 432 KNGELQ--VFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred cCCceE--EEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 443211 12211111111111122222334455665444556666777777642 122211 10 011122
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+-.+.+||||+. |+..- .+...+||.+|. -.=...|..+.-.+.
T Consensus 510 dvL~v~~Spdgk~----LaVsL-------------LdnTVkVyflDt------------------lKFflsLYGHkLPV~ 554 (888)
T KOG0306|consen 510 DVLCVSVSPDGKL----LAVSL-------------LDNTVKVYFLDT------------------LKFFLSLYGHKLPVL 554 (888)
T ss_pred cEEEEEEcCCCcE----EEEEe-------------ccCeEEEEEecc------------------eeeeeeeccccccee
Confidence 4567899999997 77654 344457888872 233456777777899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
+...|||++.|+..+.+.. +.+|-++=|.-..-.-. +..++..+.|.|+.
T Consensus 555 smDIS~DSklivTgSADKn-----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 555 SMDISPDSKLIVTGSADKN-----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT 604 (888)
T ss_pred EEeccCCcCeEEeccCCCc-----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc
Confidence 9999999999988877652 44444444443221111 11245567788865
Q ss_pred CEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEE
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
+++|+...++...-| |-+.= .++.+......+.-.+.+|+|+.++-.
T Consensus 605 -~~FFt~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 605 -HLFFTCGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred -eeEEEecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 588888766554444 42221 233343333344445677888866543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.2e-05 Score=76.68 Aligned_cols=278 Identities=12% Similarity=0.059 Sum_probs=149.6
Q ss_pred CCcc--eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 51 GNGT--QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 51 ~dg~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++|+ -+.|..+...|.++.....|.+|++..+..... +.+....+.+....+-++++.++-.++. +..++|.
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----~tLaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wn 247 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----STLAGSLGNITSIDFDSDNKHVIAASND--KNLRLWN 247 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----hhhhccCCCcceeeecCCCceEEeecCC--Cceeeee
Confidence 4554 344555555677777777777776644432222 2233344678899999999987654433 4455555
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
++.......++- ..++| .+..|.-....++-.+.+.+.+ .|+.......+. ....+....+...+
T Consensus 248 vd~~r~~~TLsG----HtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt-~l~~S~cnDI~~~~-- 312 (459)
T KOG0288|consen 248 VDSLRLRHTLSG----HTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKT-VLPGSQCNDIVCSI-- 312 (459)
T ss_pred ccchhhhhhhcc----cccce------eeehhhccccceeeccccchhh--hhhhhhhheecc-ccccccccceEecc--
Confidence 542211111211 11222 4566666665555555544433 333211110000 00111111111110
Q ss_pred CcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
-....+.....|..||..++..+.. .+....+.++..|+||.. |...+ ++..|-++|+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl- 370 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL- 370 (459)
T ss_pred eeeeecccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-
Confidence 0011122345588999888877666 566668899999999998 77655 3335667776
Q ss_pred cccchhhhhhhhcCCCCCCcceecCCCCc-----cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 289 LYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+.+++....-.+ ......|||||++++-.+.+ ..||+|++.+++...
T Consensus 371 ----------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d-----------gsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 371 ----------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD-----------GSVYIWSVFTGKLEK 423 (459)
T ss_pred ----------------ccccEEEEeeccccccccccceeEECCCCceeeeccCC-----------CcEEEEEccCceEEE
Confidence 4444443322111 25668999999998866655 359999999887532
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+.. ..... + .+....|.|-|+.|+.. +......||
T Consensus 424 ~l~----------~s~s~--~-----aI~s~~W~~sG~~Llsa-dk~~~v~lW 458 (459)
T KOG0288|consen 424 VLS----------LSTSN--A-----AITSLSWNPSGSGLLSA-DKQKAVTLW 458 (459)
T ss_pred Eec----------cCCCC--c-----ceEEEEEcCCCchhhcc-cCCcceEec
Confidence 211 11111 1 24577899999877543 333333444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00019 Score=73.66 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=138.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+-+.++|-.-+.+ |.. ....+.+|+ .++...+.+++.-. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhV-yTg-----GkgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHV-YTG-----GKGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCccee-Eec-----CCCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 4566777777766 432 222444552 23322233222110 1233468889999999988532
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~ 256 (771)
...|-+||++...++.-..++. ......++.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 2678899998876544311222 22344678999998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+.|.. |.+. .|.++||- +-..++++..+...+....+|+||.+|.....
T Consensus 523 -vcFsc------------csdG--nI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 523 -VCFSC------------CSDG--NIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred -eeeee------------ccCC--cEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 88987 4333 57777771 33456778777778889999999999864333
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ +.+..||+..+...+. -+| ...+.++..+|.+..|++-.. +.+++
T Consensus 572 D-----------ntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavGMe---ns~ve 617 (705)
T KOG0639|consen 572 D-----------NTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVGME---NSNVE 617 (705)
T ss_pred c-----------cceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeeecc---cCcEE
Confidence 3 4578888876543211 111 124567788999998876543 23456
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
.+.....+..+|.....-+-..-|++.|++++-+
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeec
Confidence 6666555666777666544456678888876644
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.2e-05 Score=75.07 Aligned_cols=270 Identities=12% Similarity=0.104 Sum_probs=144.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+....+.|-++...++-. +...++.+| ..+....+...-.+..| .+..+.+.+|+++++-.+.+...+
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g------~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLG------NITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCC------CcceeeecCCCceEEeecCCCcee
Confidence 456677888876666542 344466677 33322111111112222 237889999999988877666433
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+.........+..+....-...|...-...+.+..+.+|-.||+..+...+-. .+.. ....+.-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S-~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGS-QCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccc-cccceEec---ce----
Confidence 3432222111111112111111112111111333445567778888775543321 2222 22233333 11
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.++++ ..+..|..+|. .++..++-.+..+.+.+...|+||..|...+.+
T Consensus 314 ~~~Sg--------------H~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISG--------------HFDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeec--------------ccccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 33332 12235777776 555555544555678999999999998777655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ .|-++|+.+.+.++..... |..+. ......||||+.+++.-+ ....+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA~----------------g~k~asDwtrvvfSpd~~YvaAGS---~dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSAE----------------GFKCASDWTRVVFSPDGSYVAAGS---ADGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeecc----------------ccccccccceeEECCCCceeeecc---CCCcEE
Confidence 4 3778888776543321111 11111 235778999999765433 234577
Q ss_pred EEECCCCcEEEecCCCC---CceeeEEeecCCEEEEEE
Q 004141 417 SVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~---~~~~~~~s~dg~~l~~~~ 451 (771)
.+++.+|+++.+..... .+....|++.|..++.+.
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 77888999887754433 244567778777776543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.02 Score=69.30 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=69.3
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE-EecccccCCCCCc-ccccCCCCCCcc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV-IPVVQCAEGDCFP-GLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~-g~~~~~~~~~~~ 396 (771)
....+|+|||++|++.... ..+|.++|+.+++...+..+.... .........+... ...-..+..+++
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav 811 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC 811 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeE
Confidence 4567899999988766543 357999998876532111100000 0000000000000 000012456788
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------------CceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------------~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
++||+ ||++.. ....|..+|.+++.+..+..... ......++++|+ ++++. + ...+|.+
T Consensus 812 d~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD-t--~Nn~Irv 884 (1057)
T PLN02919 812 AKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD-T--NNSLIRY 884 (1057)
T ss_pred eCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE-C--CCCEEEE
Confidence 99997 555543 34567888988888776643210 123346777776 44433 2 2335777
Q ss_pred EEeccc
Q 004141 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
+++.++
T Consensus 885 id~~~~ 890 (1057)
T PLN02919 885 LDLNKG 890 (1057)
T ss_pred EECCCC
Confidence 776554
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.3e-05 Score=69.35 Aligned_cols=194 Identities=8% Similarity=0.078 Sum_probs=116.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK 234 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~ 234 (771)
...+||.|.++|+.....+..+. ++..... .......+..-.....|...-...+.......+.+||..+|+..+-
T Consensus 104 k~~af~~ds~~lltgg~ekllrv--fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s- 180 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRV--FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS- 180 (334)
T ss_pred eeEEecccchhhhccchHHHhhh--hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE-
Confidence 47889999999988766553331 2111111 1111112333333444543333444445667899999999987665
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 314 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~ 314 (771)
+.-...+.++..|+||+ |+.++. .+.|--+|. .+-....-..
T Consensus 181 -L~~~s~VtSlEvs~dG~-----ilTia~---------------gssV~Fwda-----------------ksf~~lKs~k 222 (334)
T KOG0278|consen 181 -LEFNSPVTSLEVSQDGR-----ILTIAY---------------GSSVKFWDA-----------------KSFGLLKSYK 222 (334)
T ss_pred -EecCCCCcceeeccCCC-----EEEEec---------------CceeEEecc-----------------ccccceeecc
Confidence 45555688999999999 555541 124555664 2222221122
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
-+..+.+.+.+|+-. ++....+ ...+|++|..+++.+..- ..+.|. -+..+
T Consensus 223 ~P~nV~SASL~P~k~-~fVaGge----------d~~~~kfDy~TgeEi~~~-------------nkgh~g-----pVhcV 273 (334)
T KOG0278|consen 223 MPCNVESASLHPKKE-FFVAGGE----------DFKVYKFDYNTGEEIGSY-------------NKGHFG-----PVHCV 273 (334)
T ss_pred CccccccccccCCCc-eEEecCc----------ceEEEEEeccCCceeeec-------------ccCCCC-----ceEEE
Confidence 334578889999874 3333322 356899999998864331 011111 23456
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
.|||||. ++.+.+.++..+||....
T Consensus 274 rFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 274 RFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred EECCCCc-eeeccCCCceEEEEEecC
Confidence 8999997 888888999999998765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0005 Score=75.50 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=66.7
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
+..|+.+ +-++....+..+.+|++...+...+ ......+..++|.|-..+ +|++- | -++
T Consensus 374 DlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSG-----------S--LD~ 432 (712)
T KOG0283|consen 374 DLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISG-----------S--LDG 432 (712)
T ss_pred ecccccC-CeeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeec-----------c--ccc
Confidence 4445554 4556666778999999998888777 677778999999996654 23331 1 223
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|.++++ ...++.--++-...+....|+|||+..+..+..
T Consensus 433 KvRiWsI-----------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 433 KVRLWSI-----------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ceEEeec-----------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 5555665 334444444445668899999999987765554
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=72.52 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=94.6
Q ss_pred CccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCC----cc-----cccc-cCCCcccceeecCC
Q 004141 94 FPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ----TV-----HGSV-YADGWFEGISWNSD 163 (771)
Q Consensus 94 ~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~-~~~~~~~~~~wSpD 163 (771)
+......+....|||+|..||-..+.+ ...+|..+. .+.++... .. +... .-.+....++||||
T Consensus 61 Ls~H~~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~-~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 61 LSRHTRAVNVVRFSPDGELLASGGDGG-----EVFLWKQGD-VRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred ccCCcceeEEEEEcCCcCeeeecCCCc-----eEEEEEecC-cCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 333445688899999999998654332 455663221 11100000 00 0000 01122368899999
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004141 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
+..+++.+ ..+.+++||+..|....+. ......+.
T Consensus 135 ~~~l~s~s--------------------------------------------~dns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGS--------------------------------------------VDNSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeee--------------------------------------------ccceEEEEEeccceeEeec-cccccccc
Confidence 99988854 3478899999999887763 34556788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc---ccc
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAF 320 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~ 320 (771)
.++|-|-++. |+..+....++..+ .+-...++.+..+ .+..+.....-+...+|..+.. ..+
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~----~~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFS----AKLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceee----eeeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 77655322111111 1111123322210 0111111112234445544322 367
Q ss_pred ceeecCCCCEEEE
Q 004141 321 FPRFSPDGKFLVF 333 (771)
Q Consensus 321 ~p~~SpDG~~l~f 333 (771)
.++|||||..|+-
T Consensus 235 RlsfTPdG~llvt 247 (434)
T KOG1009|consen 235 RLSFTPDGSLLVT 247 (434)
T ss_pred hcccCCCCcEEEc
Confidence 7999999997664
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00054 Score=63.38 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=76.4
Q ss_pred CcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCC-CCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 537 DPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~-~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.-.|||+-| -+... ......+..+|-+.+|..+.+.++.+. |||.. ....+.+|+..+++++...++
T Consensus 36 ~~~vvfiGG-LgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~f- 105 (299)
T KOG4840|consen 36 SVKVVFIGG-LGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGF- 105 (299)
T ss_pred EEEEEEEcc-cCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCc-
Confidence 355666655 33221 123345677888999999999988653 24432 223468999999998876542
Q ss_pred CCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCccchh
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 654 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~~~~ 654 (771)
...|+|+|||-|.+-.++++.+ .+..++++|+.+|+.|..
T Consensus 106 -St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 -STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 4589999999999999988843 256788999999999875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0026 Score=66.04 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=104.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++.+..+.+.... +--.....++.|.+.|+. |.+....+. +.+-. +-..+.||++++
T Consensus 202 a~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~----ll~l~~t~~--ksnKs--yfgesnLyl~~~---------- 262 (561)
T COG5354 202 AMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY----LLVLVMTHT--KSNKS--YFGESNLYLLRI---------- 262 (561)
T ss_pred cEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----EEEEEEEee--ecccc--eeccceEEEEee----------
Confidence 45556665544443331 223345668899999998 888664332 11111 123468999998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004141 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
....++..-...+.+.+..|+|+++.++.++.-. ...+...|+.++-...+.++
T Consensus 263 -------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------pa~~s~~~lr~Nl~~~~Pe~---------- 316 (561)
T COG5354 263 -------TERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------PASVSVFDLRGNLRFYFPEQ---------- 316 (561)
T ss_pred -------cccccceeccccccceeeeecccCCceeEEeccc---------ccceeecccccceEEecCCc----------
Confidence 4333333224466789999999999999888322 23456666665311111111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEEeCC
Q 004141 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~~~~ 454 (771)
--..+.|||.++++++..-..-...+-.++..+ +...+ .......+..-|+||+..+.....++
T Consensus 317 ------------~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 317 ------------KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred ------------ccccccccCcccEEEEecCCccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEecCCCc
Confidence 123567999999988865544344555667654 44444 22223345677899998766554433
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00014 Score=77.04 Aligned_cols=169 Identities=15% Similarity=0.177 Sum_probs=99.6
Q ss_pred CCcEEEEEcCCCCCCCCCc-chHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH--c
Q 004141 536 CDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--M 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G--~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--~ 610 (771)
-.|+++++||.+....... +..+-..|.-.| .-|..+|++...+ . ..-....+-+..+.++.+. .
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~ig--G--------~nI~h~ae~~vSf~r~kvlei~ 244 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIG--G--------ANIKHAAEYSVSFDRYKVLEIT 244 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCC--C--------cchHHHHHHHHHHhhhhhhhhh
Confidence 4688999999882221222 222333333333 4456677763211 0 0000112333344443222 2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCc-eeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHH
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+......|.|+|.|||+.++.+......|. +.++|++.=..+- .+ +. .+..
T Consensus 245 gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~------vd----------gp------rgir------ 296 (784)
T KOG3253|consen 245 GEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDT------VD----------GP------RGIR------ 296 (784)
T ss_pred ccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccC------CC----------cc------cCCc------
Confidence 335567899999999988888777654443 5666654211110 00 00 0001
Q ss_pred HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
-+.+-.++.|+|++.|.+|..+++...+++.++++.. ++++++.+++|.+..+
T Consensus 297 -------DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA~---~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 297 -------DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQAE---VELHVIGGADHSMAIP 349 (784)
T ss_pred -------chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhcc---ceEEEecCCCccccCC
Confidence 1223356789999999999999999999999988874 8899999999998743
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00056 Score=73.86 Aligned_cols=155 Identities=14% Similarity=0.199 Sum_probs=98.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
........+||++.|+.+.+. ++..+| ..+...+..-. .| .++.-...|+|.|..|+-..-+..
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswKa---~H-----e~Pvi~ma~~~~g~LlAtggaD~~- 128 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWKA---IH-----EAPVITMAFDPTGTLLATGGADGR- 128 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHhh---cc-----CCCeEEEEEcCCCceEEeccccce-
Confidence 456788999999988776543 477777 44443333322 11 011246789999976666544433
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCc--ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
.+.|+.........+..+........|.++|.. ++++..+..+++||+..+..-..+-......+.+..+++|+..
T Consensus 129 -v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~- 206 (775)
T KOG0319|consen 129 -VKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE- 206 (775)
T ss_pred -EEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-
Confidence 235665444444455555555556678887753 4566678899999998665411111334456789999999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++ |+.-++++|+
T Consensus 207 ---~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ---LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ---EEEec---------------cCcEEEEeeh
Confidence 88887 4456888887
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00031 Score=67.94 Aligned_cols=281 Identities=12% Similarity=0.086 Sum_probs=149.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCcceEEEecCCc-ccccc---cCC-CcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQT-VHGSV---YAD-GWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-~~g~~---~~~-~~~~~~~wSpDg~~la~~ 170 (771)
+.....+|||||..+|.-+.. .+-.|+.+. .....+.+...... .|-.| |.. +....+.|.|-+..|+..
T Consensus 113 ~~cR~aafs~DG~lvATGsaD--~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 113 SPCRAAAFSPDGSLVATGSAD--ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cceeeeeeCCCCcEEEccCCc--ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 446788999999988864432 122233332 01111111111000 01000 111 234789999999988888
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEE
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 247 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~w 247 (771)
+.+...+-..+.....+...+............|-|.+.-.+++...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 8777655322221111111111111222234456666555677888899999999987654432 222 346889999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-cC--CCCccccceee
Q 004141 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LT--ESISSAFFPRF 324 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt--~~~~~~~~p~~ 324 (771)
|+.|+ |+.++. .++.|-++|= -++.+.+ +- .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666652 3346777773 3444322 21 23345889999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
+.+||+|.-...+ +-+++|.+.++...+.-.+.... . .-. ......|.....+++
T Consensus 314 tkn~kyiLsSG~D-----------S~vkLWEi~t~R~l~~YtGAg~t-g------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----------STVKLWEISTGRMLKEYTGAGTT-G------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCc-----------ceeeeeeecCCceEEEEecCCcc-c------chh-------hhhhhhhcCccceEE
Confidence 9999988654444 34667777776653222111000 0 000 012334554555555
Q ss_pred EEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCC
Q 004141 405 LSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGD 445 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~ 445 (771)
|- ......|..+|..++....+... .+...+...||.+-
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cc--ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 43 33455688888777765555432 23344555555443
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00089 Score=65.16 Aligned_cols=231 Identities=14% Similarity=0.168 Sum_probs=134.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc--chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS--YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~--~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- +.+++|+||-.|.-+.+... .. ....++.+.++ |.|+-+|-+|...-. ..++..+.-.
T Consensus 33 ~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe~gA----p~~p~~y~yP 103 (326)
T KOG2931|consen 33 VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEH-FCVYHVDAPGQEDGA----PSFPEGYPYP 103 (326)
T ss_pred cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHhh-eEEEecCCCccccCC----ccCCCCCCCC
Confidence 467667642 33367889999985443211 11 12345666666 999999999853322 2234343334
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---------------hcCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------------VGTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---------------~~~~ 660 (771)
..+++.+.+-.+.+.. .-+-|.-+|--.|+++-..+|..||+++-++|++++......+ .+.+
T Consensus 104 smd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~~~K~~s~~l~~~Gmt 181 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWAYNKVSSNLLYYYGMT 181 (326)
T ss_pred CHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHHHHHHHHHHHHhhchh
Confidence 5677777777776663 4467899999999999999999999999999999875532211 0111
Q ss_pred -CCCcchhhhhccCCCCcc-----------CCCCCChhhHHHH----hhcCccc-ccC----CCCCcEEEEeeCCCCccC
Q 004141 661 -DIPDWCYVESYGSKGKDS-----------FTESPSVEDLTRF----HSKSPIS-HIS----KVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 661 -~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~----~~~sp~~-~~~----~i~~P~lii~G~~D~~vp 719 (771)
...++.+...|+.+.... +.......+...+ .....+. ... .++||+|++.|+.-+.+
T Consensus 182 ~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~R~DL~~~r~~~~~tlkc~vllvvGd~Sp~~- 260 (326)
T KOG2931|consen 182 QGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLNPKNLALFLNAYNGRRDLSIERPKLGTTLKCPVLLVVGDNSPHV- 260 (326)
T ss_pred hhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCChhHHHHHHHHhcCCCCccccCCCcCccccccEEEEecCCCchh-
Confidence 112222233333322111 1111221222221 1111111 111 45699999999998887
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
+...++..+|... ...++.+.++|-.....+. ....+.+.-|+
T Consensus 261 -~~vv~~n~~Ldp~--~ttllk~~d~g~l~~e~qP-~kl~ea~~~Fl 303 (326)
T KOG2931|consen 261 -SAVVECNSKLDPT--YTTLLKMADCGGLVQEEQP-GKLAEAFKYFL 303 (326)
T ss_pred -hhhhhhhcccCcc--cceEEEEcccCCcccccCc-hHHHHHHHHHH
Confidence 6667777766543 4778888888765443232 24444444444
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00086 Score=67.36 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=96.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEe-cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws-pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+.++.++++.+.+. .+. ....++. +||+ |++.. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 378999999999877652 222 4455666 6654 54443 1 14555587
Q ss_pred hhhhhcCCCCCCcceecCCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004141 296 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
.+++.+.+... .......++.|||+ |+|.......... .....||+++.. ++...+....
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~~- 133 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADGL- 133 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEEE-
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecCc-
Confidence 66665554332 23467789999999 7777655421100 111569999876 4432221111
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC--CCcE---EEec-CCCC--CceeeEEe
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGEL---LRIT-PAES--NFSWSLLT 441 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~--tg~~---~~l~-~~~~--~~~~~~~s 441 (771)
. ....++|+||++.||++.+..+ .||+++++ ++++ +.+. .... ......++
T Consensus 134 ------------~-------~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 134 ------------G-------FPNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp ------------S-------SEEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ------------c-------cccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 1 1346789999998988665444 46666653 4422 2221 1221 13334556
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 6665 444433 44567777644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00077 Score=65.18 Aligned_cols=162 Identities=10% Similarity=0.009 Sum_probs=97.6
Q ss_pred cCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 216 RQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
.+..|++|++.+... -.+ .-....+..+.|.+||.. |+-.+ .+..++.+|.
T Consensus 67 ~Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------ 119 (338)
T KOG0265|consen 67 SDRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------ 119 (338)
T ss_pred CcceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec------
Confidence 346889998765432 223 233446788999999997 76665 3348999998
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++|+. ++...+...+.+..-+.-|-.|+-...++ .++.+||....+..+..+...+
T Consensus 120 -----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq-- 176 (338)
T KOG0265|consen 120 -----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ-- 176 (338)
T ss_pred -----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee--
Confidence 66654 45555555566666666777777666554 4688889887665444322221
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNII 448 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~ 448 (771)
+..+.|..++..+ ++..-++..++| |+..++...+..+.. .+.....+++|..++
T Consensus 177 ------------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 177 ------------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred ------------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccc
Confidence 3456787777655 444444444555 554555555544433 344455666766543
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=71.84 Aligned_cols=102 Identities=18% Similarity=0.305 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHH--------HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~l--------a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
..|||+||..++ ...+......+ ....+.++.+||..... . ..+.......+-+..+++.+.+
T Consensus 5 ~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s---~----~~g~~l~~q~~~~~~~i~~i~~ 75 (225)
T PF07819_consen 5 IPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELS---A----FHGRTLQRQAEFLAEAIKYILE 75 (225)
T ss_pred CEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCcccc---c----cccccHHHHHHHHHHHHHHHHH
Confidence 569999996554 22333333322 12357889999875211 0 1111111223445556666655
Q ss_pred cC---CCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecC
Q 004141 610 MG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 648 (771)
Q Consensus 610 ~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~ 648 (771)
.. ...+++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 76 ~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 76 LYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred hhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 42 356789999999999999988876543 3567766544
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.007 Score=61.63 Aligned_cols=206 Identities=14% Similarity=0.152 Sum_probs=123.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+....++|+-..++..+... ++.+| ... ....+... | ++....++-.|.|++|+..++++
T Consensus 262 kki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~----h-----~~~V~~ls~h~tgeYllsAs~d~-- 325 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP----H-----EEPVTGLSLHPTGEYLLSASNDG-- 325 (506)
T ss_pred eEEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc----c-----cccceeeeeccCCcEEEEecCCc--
Confidence 4577888999988776554433 66677 222 11122221 1 11125788889999998876554
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....|..+|.. ..+..-..+..+.+.+|.|||
T Consensus 326 ------------------------------------------~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---- 359 (506)
T KOG0289|consen 326 ------------------------------------------TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---- 359 (506)
T ss_pred ------------------------------------------eEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----
Confidence 222334444432 222101123457788999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
++|..- ..++.|-++|+. ......++..+.+.+....||.+|=+||...
T Consensus 360 --Lifgtg-------------t~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 360 --LIFGTG-------------TPDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred --eEEecc-------------CCCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 556541 234477788872 3335666777788899999999999999888
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
++. .+.+||+..-+..+. ++. ..+. .+.+++|-.-|++|... +....+
T Consensus 409 dd~-----------~V~lwDLRKl~n~kt----------~~l---~~~~-----~v~s~~fD~SGt~L~~~---g~~l~V 456 (506)
T KOG0289|consen 409 DDG-----------SVKLWDLRKLKNFKT----------IQL---DEKK-----EVNSLSFDQSGTYLGIA---GSDLQV 456 (506)
T ss_pred cCC-----------eEEEEEehhhcccce----------eec---cccc-----cceeEEEcCCCCeEEee---cceeEE
Confidence 764 288888865442110 000 0010 14466777778877654 456778
Q ss_pred EEEECCCCcEEEec
Q 004141 416 ISVNVSSGELLRIT 429 (771)
Q Consensus 416 ~~~d~~tg~~~~l~ 429 (771)
|.+.-.+.+.+.+.
T Consensus 457 y~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 457 YICKKKTKSWTEIK 470 (506)
T ss_pred EEEecccccceeee
Confidence 88887777766654
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0015 Score=67.39 Aligned_cols=232 Identities=11% Similarity=0.049 Sum_probs=134.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+....|--||+.+|-- +. .|.-++|.+....-.+.+-.....+ ....|+|++..++..+.++
T Consensus 69 ~~v~s~~fR~DG~LlaaG-D~-sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAG-DE-SGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEcc-CC-cCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 457788999999988742 21 1333444311111111111122233 3778999888777654432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+-+||+.+..+ ++.-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 4566788888876 3321445557888899999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++++- .+..|..+|+ .....+.+ .++...+.+..+-|.|+.|+..+
T Consensus 169 vvtGs--------------YDg~vrl~Dt-----------------R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-- 215 (487)
T KOG0310|consen 169 VVTGS--------------YDGKVRLWDT-----------------RSLTSRVVELNHGCPVESVLALPSGSLIASAG-- 215 (487)
T ss_pred EEecC--------------CCceEEEEEe-----------------ccCCceeEEecCCCceeeEEEcCCCCEEEEcC--
Confidence 88872 2235666665 22212222 23445688899999999888554
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
++.+.+||+.+|......... +.-.+..+++..|+.+|+ +.+-++...+|.
T Consensus 216 ----------Gn~vkVWDl~~G~qll~~~~~------------------H~KtVTcL~l~s~~~rLl-S~sLD~~VKVfd 266 (487)
T KOG0310|consen 216 ----------GNSVKVWDLTTGGQLLTSMFN------------------HNKTVTCLRLASDSTRLL-SGSLDRHVKVFD 266 (487)
T ss_pred ----------CCeEEEEEecCCceehhhhhc------------------ccceEEEEEeecCCceEe-ecccccceEEEE
Confidence 356899999866542211110 001234566777887774 555566667774
Q ss_pred EECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 418 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 418 ~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
..+-++. .+.-+ +.+-...+++|+..+++-.++..
T Consensus 267 --~t~~Kvv~s~~~~-~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYP-GPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeecc-cceeeEEecCCCceEEEecccce
Confidence 3232322 22222 23344677888888887665543
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00088 Score=66.23 Aligned_cols=232 Identities=13% Similarity=0.194 Sum_probs=115.4
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC--Cc-ch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--~~-~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.++..++-- ..+++|+||-.|--+.+... .. +. ..++.+ ...|.|+-+|.+|..+-... ++..+.-.
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i-~~~f~i~Hi~aPGqe~ga~~----~p~~y~yP 80 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEI-LQNFCIYHIDAPGQEEGAAT----LPEGYQYP 80 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHH-HTTSEEEEEE-TTTSTT---------TT----
T ss_pred EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHH-hhceEEEEEeCCCCCCCccc----cccccccc
Confidence 466666642 23468999999974432111 11 11 233444 45699999999996542222 23232223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh---------------cCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------GTT 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---------------~~~ 660 (771)
.++++.+.+..+.+.. .-+.+.-+|--+|+++-+.+|..+|+++-++|+++|......+. +.+
T Consensus 81 smd~LAe~l~~Vl~~f--~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~L~~~gmt 158 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDHF--GLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWLLYSYGMT 158 (283)
T ss_dssp -HHHHHCTHHHHHHHH--T---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH-------CTT
T ss_pred CHHHHHHHHHHHHHhC--CccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhcccccccccc
Confidence 4555555555555552 33569999999999999999999999999999999876432211 111
Q ss_pred CC-CcchhhhhccCCCCc-----------cCCCCCChhhHHHHh----hc-CcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 661 DI-PDWCYVESYGSKGKD-----------SFTESPSVEDLTRFH----SK-SPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 661 ~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~----~~-sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
.. .+......|+..... .+.....+.+...+. .. +.....+...||+|++.|+.-+.+ +.+
T Consensus 159 ~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp~~--~~v 236 (283)
T PF03096_consen 159 SSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSPHV--DDV 236 (283)
T ss_dssp S-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTSTTH--HHH
T ss_pred cchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCcch--hhH
Confidence 10 011111111110000 000111111111111 11 111234556799999999999887 777
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.++..+|.. ...+++.++++|=... .+......+.+.-|++
T Consensus 237 v~~ns~Ldp--~~ttllkv~dcGglV~-eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 237 VEMNSKLDP--TKTTLLKVADCGGLVL-EEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp HHHHHHS-C--CCEEEEEETT-TT-HH-HH-HHHHHHHHHHHHH
T ss_pred HHHHhhcCc--ccceEEEecccCCccc-ccCcHHHHHHHHHHHc
Confidence 888888854 3588999999865332 3333345555555554
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.011 Score=63.38 Aligned_cols=187 Identities=12% Similarity=0.052 Sum_probs=115.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...+.++|..+.+...- .+-......++++||++. ++... .. ++...+..+|-
T Consensus 95 ~~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~----vYV~n-~~-----------~~~~~vsvid~--------- 147 (381)
T COG3391 95 SNTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY----VYVAN-AG-----------NGNNTVSVIDA--------- 147 (381)
T ss_pred CCeEEEEcCcccceeeE--eeeccCCceEEECCCCCE----EEEEe-cc-----------cCCceEEEEeC---------
Confidence 36788899776665444 333336778999999997 66554 11 13457888886
Q ss_pred hhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 297 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.++...............+++|||++++-.... ...|.++|..+....+ .... ...
T Consensus 148 --------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~~~~-~~~---- 203 (381)
T COG3391 148 --------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-GSVG-SLV---- 203 (381)
T ss_pred --------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-cccc-ccc----
Confidence 544433222222233778999999987665522 3568888865544322 1100 000
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~dg~~l~~~~~~~ 454 (771)
..+ .......+++||++++..........+..+|..++.+........ ......++|+|+.++.....
T Consensus 204 ----~~~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~- 273 (381)
T COG3391 204 ----GVG-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ- 273 (381)
T ss_pred ----ccC-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC-
Confidence 011 124567799999988777654444689999999988887632222 23346788999988877654
Q ss_pred CCCCeEEEEEec
Q 004141 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
...+++++..
T Consensus 274 --~~~V~vid~~ 283 (381)
T COG3391 274 --GGTVSVIDGA 283 (381)
T ss_pred --CCeEEEEeCC
Confidence 5667777654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0031 Score=63.12 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=60.5
Q ss_pred eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC
Q 004141 43 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 122 (771)
Q Consensus 43 ~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 122 (771)
....+.+|+||+.+++... ......|+.... + +....+... .....|+|+|+|...++.. .. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~--~-~~~~~~~~g------~~l~~PS~d~~g~~W~v~~-~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPA--G-GPVRPVLTG------GSLTRPSWDPDGWVWTVDD-GS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcC--C-CcceeeccC------CccccccccCCCCEEEEEc-CC-C
Confidence 3557778999999999871 124457777442 2 223322211 3578899999976554433 22 1
Q ss_pred CCeEEEEecCCcce-EEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 123 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 123 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...++.....+... ..++.... .+ .+..+.+||||+++|++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~-~~------~I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGL-RG------RITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEeccccc-CC------ceEEEEECCCCcEEEEEEecC
Confidence 11222111223222 22222211 11 237999999999999997654
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=73.86 Aligned_cols=57 Identities=18% Similarity=0.380 Sum_probs=40.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
+.+..-+|||||.-|+.+.+++ +..+| ..|-.+.. .+....+ .+.+|.|+...++|-
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEe
Confidence 5577789999999998765444 88999 44443322 2223333 699999999999996
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=70.63 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-----chHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-----YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-----~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
|+..+++..+.-+ ..++..-|+++-|.+....... .........+.|..|+.+||||-+ .+.. ..+
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg---~S~G---~~s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVG---SSTG---PPS 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccc---cCCC---CCC
Confidence 6788888776522 2345567888888554322100 122344455789999999999944 3311 111
Q ss_pred ccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHhhC
Q 004141 592 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 637 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~ 637 (771)
....+.|..++++||.++. .+.+++|.+.|||.||.++..++.++
T Consensus 191 -~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 -RKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1234788889999998743 47889999999999999998766654
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0004 Score=69.36 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=58.6
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 702 ~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
...+|-|++.++.|.+++.++.+++.+..++.|.+++...+.+..|.-....+..++++.+.+|+
T Consensus 176 ~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 176 PSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred CCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 45689999999999999999999999999999999999999999998777777778888888773
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=71.81 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=116.1
Q ss_pred cccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCcceE--------EEecCCcccccccCCCcccceeecC
Q 004141 98 MTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEK--------EFHVPQTVHGSVYADGWFEGISWNS 162 (771)
Q Consensus 98 ~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~g~~~~~~~~~~~~wSp 162 (771)
.+.++..+.+||++..+..+.+. ...+|+ .|..++ ...++..+ .++++||
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv----------L~v~~Sp 518 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV----------LCVSVSP 518 (888)
T ss_pred ccceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeeccceEEeccccE----------EEEEEcC
Confidence 35688899999999998765543 333331 233323 23333333 6999999
Q ss_pred CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCcc
Q 004141 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 242 (771)
Q Consensus 163 Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~ 242 (771)
||+.||..--+. .-.+|-+| +=+...-. -.....+
T Consensus 519 dgk~LaVsLLdn------------------------------------------TVkVyflD--tlKFflsL-YGHkLPV 553 (888)
T KOG0306|consen 519 DGKLLAVSLLDN------------------------------------------TVKVYFLD--TLKFFLSL-YGHKLPV 553 (888)
T ss_pred CCcEEEEEeccC------------------------------------------eEEEEEec--ceeeeeee-cccccce
Confidence 999998863221 12344444 33322210 2345567
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccc
Q 004141 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~ 321 (771)
.....|||++- |+..+ .+++-.||=+|+ |.+ +-+..+..++.+
T Consensus 554 ~smDIS~DSkl----ivTgS-------------ADKnVKiWGLdF-------------------GDCHKS~fAHdDSvm~ 597 (888)
T KOG0306|consen 554 LSMDISPDSKL----IVTGS-------------ADKNVKIWGLDF-------------------GDCHKSFFAHDDSVMS 597 (888)
T ss_pred eEEeccCCcCe----EEecc-------------CCCceEEecccc-------------------chhhhhhhcccCceeE
Confidence 78899999997 77665 345557888876 554 456677888999
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
+.|-|+ ..+.|....+ ..+..||-..=+..+...+. .. -+.-.+-+|+|.
T Consensus 598 V~F~P~-~~~FFt~gKD----------~kvKqWDg~kFe~iq~L~~H--------------~~-----ev~cLav~~~G~ 647 (888)
T KOG0306|consen 598 VQFLPK-THLFFTCGKD----------GKVKQWDGEKFEEIQKLDGH--------------HS-----EVWCLAVSPNGS 647 (888)
T ss_pred EEEccc-ceeEEEecCc----------ceEEeechhhhhhheeeccc--------------hh-----eeeeeEEcCCCC
Confidence 999995 5677777664 23555653221211111110 00 122345689998
Q ss_pred EEEEEeeeCCeeEEEEE
Q 004141 402 TMLLSSIWGSSQVIISV 418 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~ 418 (771)
. +++++.+...++|.-
T Consensus 648 ~-vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 648 F-VVSSSHDKSIRLWER 663 (888)
T ss_pred e-EEeccCCceeEeeec
Confidence 4 467766677777753
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.002 Score=62.76 Aligned_cols=186 Identities=11% Similarity=0.105 Sum_probs=105.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+..||+.|.+||... .+..+.+||..+-.+-++.
T Consensus 27 ~~~~Fs~~G~~lAvGc--------------------------------------------~nG~vvI~D~~T~~iar~l- 61 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGC--------------------------------------------ANGRVVIYDFDTFRIARML- 61 (405)
T ss_pred ceEEeccCcceeeeec--------------------------------------------cCCcEEEEEccccchhhhh-
Confidence 4889999999999853 3367889999887765552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
...-..+.+++||+||+. |+..+ ++..|-.+|+- .+.-..++. -
T Consensus 62 saH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rir-f 105 (405)
T KOG1273|consen 62 SAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIR-F 105 (405)
T ss_pred hccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEE-c
Confidence 334447889999999998 88776 34467778871 333333332 1
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
...+....|.|-.+..+....-+ ..-+++++.......+..+. +++.. .+.....
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~----------~sp~vi~~s~~~h~~Lp~d~-----------d~dln----~sas~~~ 160 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIME----------ESPVVIDFSDPKHSVLPKDD-----------DGDLN----SSASHGV 160 (405)
T ss_pred cCccceeeeccccCCeEEEEEec----------CCcEEEEecCCceeeccCCC-----------ccccc----ccccccc
Confidence 23456677777554444333322 11344454443333332221 11110 0112234
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEE---EecCCCCCceeeEEeecCCEEEEEE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|.+-|++|+.. +. +..|-.++..|-+.. +++.. ..+-...++..|+.+++-.
T Consensus 161 fdr~g~yIitG-ts--KGkllv~~a~t~e~vas~rits~-~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 161 FDRRGKYIITG-TS--KGKLLVYDAETLECVASFRITSV-QAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred ccCCCCEEEEe-cC--cceEEEEecchheeeeeeeechh-eeeeEEEEeccCcEEEEec
Confidence 77889877543 33 344555566565433 33331 2345567888888777643
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=63.69 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=79.3
Q ss_pred HHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCC
Q 004141 604 IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 604 i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
-+|++++. =+.+..+-|.||||+.|+.+..++|+++..+|+.+++.+...+++..-..+
T Consensus 91 erYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~yyddD------------------- 149 (227)
T COG4947 91 ERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGYYDDD------------------- 149 (227)
T ss_pred HHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhccccccCc-------------------
Confidence 35777663 245678899999999999999999999999999999998876543221111
Q ss_pred ChhhHHHHhhcCcccccCCC----------CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 684 SVEDLTRFHSKSPISHISKV----------KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i----------~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
.+ ..+|..++..+ ++-+.+..|..|+..+ +.+.+-+.|.++.++..+.+..+..|
T Consensus 150 ------v~-ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dKqipaw~~~WggvaH 214 (227)
T COG4947 150 ------VY-YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDKQIPAWMHVWGGVAH 214 (227)
T ss_pred ------ee-ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccccccHHHHHhccccc
Confidence 01 12333333322 2457778899888874 45678888888877777777755555
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00077 Score=59.70 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-hhhhcCCCCCc-chhhhhccCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPD-WCYVESYGSK 674 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-~~~~~~~~~~~-~~~~~~~~~~ 674 (771)
.....+-++.++++. .....+|+|-|.||+.|.+++.++. ++++ +.+|.+.. ..|.+..+.+. |..-+.+.
T Consensus 42 p~~a~~ele~~i~~~--~~~~p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~-- 114 (191)
T COG3150 42 PQQALKELEKAVQEL--GDESPLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYV-- 114 (191)
T ss_pred HHHHHHHHHHHHHHc--CCCCceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEE--
Confidence 344455555555542 1234899999999999999998864 4443 34554422 12211111111 10000000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEEeeCC-CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~lii~G~~-D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. ........ ....+..++.| .|.+.... |++....++.+.+... ...+..|+.|.|...
T Consensus 115 -----l---e~~hI~~l----~~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-------~~~V~dgg~H~F~~f 175 (191)
T COG3150 115 -----L---ESRHIATL----CVLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPC-------YEIVWDGGDHKFKGF 175 (191)
T ss_pred -----e---ehhhHHHH----HHhhccccCCCcEEEeecccccHHHHHHHHHHHhhhh-------hheeecCCCccccch
Confidence 0 00111111 11223344444 55555444 9988777766666654 345777889988654
Q ss_pred CChHHHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLWFK 767 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~ 767 (771)
. ..++.|..|..
T Consensus 176 ~---~~l~~i~aF~g 187 (191)
T COG3150 176 S---RHLQRIKAFKG 187 (191)
T ss_pred H---HhHHHHHHHhc
Confidence 3 55778888864
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.67 E-value=4.3e-05 Score=79.07 Aligned_cols=114 Identities=15% Similarity=0.183 Sum_probs=62.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCcch-HHHHHHHH---CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~---~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 609 (771)
...+|++|++||.........|. .....+.. ..+.|+++|+...... .+..... ........+...|..|..
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~--n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVA--NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchhh--hHHHHHHHHHHHHHHHHh
Confidence 34689999999976554223333 34444433 5899999998631100 0000000 000012334455666665
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCCcc
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 651 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p~~ 651 (771)
...++.++|.|+|||+||++|..++..... ++..+..+.|..
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 445789999999999999999988887665 788888877764
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.013 Score=56.78 Aligned_cols=238 Identities=13% Similarity=0.069 Sum_probs=116.4
Q ss_pred ceEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~-la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++|.-.+ ++|.+..+ ...+.++ .+.+...+.....+-| .|+--.|||||++ +|..+....
T Consensus 70 ~Hgi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~~-LYATEndfd-- 136 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGRL-LYATENDFD-- 136 (366)
T ss_pred cCCeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCcE-EEeecCCCC--
Confidence 345778886555 55544432 2233444 3333333333333333 2345579999985 466554421
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~ 257 (771)
..+..|-++|... ...++-.. .......++.|.+||+.
T Consensus 137 ------------------------------------~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrt---- 175 (366)
T COG3490 137 ------------------------------------PNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRT---- 175 (366)
T ss_pred ------------------------------------CCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcE----
Confidence 1457888899763 34444212 22346678999999997
Q ss_pred EEEEee--cCcc--eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecC--CCCccccceeecCCC
Q 004141 258 LVFVGW--SSET--RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLT--ESISSAFFPRFSPDG 328 (771)
Q Consensus 258 l~~~~~--~~~~--~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt--~~~~~~~~p~~SpDG 328 (771)
|+...- +..+ .|.-+..+...+ .|.++|. .+|++ ..|. ....+++....-+||
T Consensus 176 lvvanGGIethpdfgR~~lNldsMeP-Slvlld~-----------------atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 176 LVVANGGIETHPDFGRTELNLDSMEP-SLVLLDA-----------------ATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred EEEeCCceecccccCccccchhhcCc-cEEEEec-----------------cccchhhhccCchhhhhcceeeeeeCCCC
Confidence 766531 1111 111111111222 4667774 33432 2333 223467888899999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
+. +|..+-. |+.+....|.-.-..++..+.+....... ..|. ..+.+++-..+...+.+++.
T Consensus 238 tv-wfgcQy~----G~~~d~ppLvg~~~~g~~l~~~~~pee~~---------~~~a----nYigsiA~n~~~glV~lTSP 299 (366)
T COG3490 238 TV-WFGCQYR----GPRNDLPPLVGHFRKGEPLEFLDLPEEQT---------AAFA----NYIGSIAANRRDGLVALTSP 299 (366)
T ss_pred cE-EEEEEee----CCCccCCcceeeccCCCcCcccCCCHHHH---------HHHH----hhhhheeecccCCeEEEecC
Confidence 84 4544322 43333334444333333322221111100 0010 11234444444444545544
Q ss_pred eCCeeEEEEEECCCCcEEEecC
Q 004141 409 WGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
.+ +..+.+|.+||.+.....
T Consensus 300 ~G--N~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 300 RG--NRAVIWDAATGAVVSEAA 319 (366)
T ss_pred CC--CeEEEEEcCCCcEEeccc
Confidence 33 345667999999886543
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=66.32 Aligned_cols=207 Identities=11% Similarity=0.131 Sum_probs=117.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCCcEEEEECCCCCCCC-Chhhh---------
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGF-GEEAL--------- 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G~~Vv~~d~rG~~~~-g~~~~--------- 585 (771)
++.++- .+|+|.. ..+...+||++||.+....+.. ...+-..|.+.|+.++++.++.-... -....
T Consensus 70 ~~~~fl-aL~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFL-ALWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEE-EEEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 344454 4666653 5667889999999666554433 34455678999999999887751100 00000
Q ss_pred --hcCCCC-----------------ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEE
Q 004141 586 --QSLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 645 (771)
Q Consensus 586 --~~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v 645 (771)
...... .-.....-+.+++.++.+++ ..+|+|+||..|++.++.++...+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 000000 00011223445556666554 3559999999999999999987654 478888
Q ss_pred ecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 646 ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 646 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
++++..... .. .......+.+++.|+|=|++.....+ .....
T Consensus 224 ~I~a~~p~~-------------------------------~~-----n~~l~~~la~l~iPvLDi~~~~~~~~--~~~a~ 265 (310)
T PF12048_consen 224 LINAYWPQP-------------------------------DR-----NPALAEQLAQLKIPVLDIYSADNPAS--QQTAK 265 (310)
T ss_pred EEeCCCCcc-------------------------------hh-----hhhHHHHhhccCCCEEEEecCCChHH--HHHHH
Confidence 887753110 00 01112345678899999998773332 22222
Q ss_pred HHHHHHh-C-CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 726 YARALRE-K-GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 726 ~~~~l~~-~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+.+.. . ....+-+.+.+..|.... ......++|..|++++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 2222222 2 233555566666664432 2223788999999875
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0034 Score=61.49 Aligned_cols=113 Identities=16% Similarity=0.168 Sum_probs=67.6
Q ss_pred cccccCCcCcccCCccCceEEEEEc-cCCceeec-c-CCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAV-K-GIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l-~-~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
...|++| |+++....+..|.++|+ ..|.--.+ + .+.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3446667 44444445678888887 33332111 1 0111 2346678999965541 55544
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
+.+...||..+ ..+.+..|-.+.+.+....|-+||.+|+..++. +..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk----------~dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK----------DDKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccC----------CCeEEE
Confidence 22333566655 445566667778889999999999987544433 356888
Q ss_pred eecCC
Q 004141 354 IDWPT 358 (771)
Q Consensus 354 ~d~~~ 358 (771)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 88754
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0047 Score=67.04 Aligned_cols=297 Identities=10% Similarity=0.043 Sum_probs=152.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCC-----CCeEEEEe
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSD-----ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-----g~~la~~~ 171 (771)
..+....+++|+..++++.++. +..+|+- .+..++..+..... +..+-++ |.++..++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDk-----vi~vwd~~~~~~l~~lp~ye~~E----------~vv~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDK-----VIIVWDLVQYKKLKTLPLYESLE----------SVVRLREELGGKGEYIITAG 257 (775)
T ss_pred hheeeeeeccCCceEEEeccCc-----EEEEeehhhhhhhheechhhhee----------eEEEechhcCCcceEEEEec
Confidence 4578899999999998875544 7888843 23334444433442 3333333 33444444
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCC-CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceE-EEec
Q 004141 172 EEPSPSKPTFSLGSTKGGSSDKDCN-SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQV-VWAP 249 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~-~wsp 249 (771)
+....+ +|.........+..... .-.......+.-+..+......+|+++|.++.++..-. ...+..+.+. .|-|
T Consensus 258 ~~g~~~--~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-vG~ndEI~Dm~~lG~ 334 (775)
T KOG0319|consen 258 GSGVVQ--YWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-VGYNDEILDMKFLGP 334 (775)
T ss_pred CCceEE--EEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhh-cCCchhheeeeecCC
Confidence 333221 22211111110000000 00111222222233333445688999998888764431 2222234444 3677
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.+. |+..+|. .+|.++++ .+..+.-+..+...+.+...+-+|-
T Consensus 335 e~~~----laVATNs---------------~~lr~y~~-----------------~~~~c~ii~GH~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 335 EESH----LAVATNS---------------PELRLYTL-----------------PTSYCQIIPGHTEAVLSLDVWSSGD 378 (775)
T ss_pred ccce----EEEEeCC---------------CceEEEec-----------------CCCceEEEeCchhheeeeeecccCc
Confidence 7776 7777643 24555576 5666666666666666666445565
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCC------------------------CCCCCCccceeeEEecccccC--CCCC
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPT------------------------NGNFSSLEKIVDVIPVVQCAE--GDCF 383 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~------------------------~~~~~~~~~~~~~~~~~~~~~--~~~f 383 (771)
.|+..+.+. ...||++|-.. +....++.+.+-++++|..++ +..|
T Consensus 379 llat~sKD~---------svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 379 LLATGSKDK---------SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEEecCCc---------eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 555544443 22344442111 111122333445677777665 2233
Q ss_pred ccc---------ccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeC
Q 004141 384 PGL---------YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 384 ~g~---------~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~ 453 (771)
|-. ++-.+..++.+|+.+ |+.+.+.+....||.++ .+.+.- |....-.+....|++..+ +++++|+
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le--~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~Sg 525 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLE--QLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCSG 525 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeeccc--CceEEEEeeCCccceEEEEeccccc-eeEeccC
Confidence 321 233467888999987 77888888888999776 344443 333333444556776544 4455544
Q ss_pred CCCCCeEEEE
Q 004141 454 PVDVPQVKYG 463 (771)
Q Consensus 454 ~~~p~~l~~~ 463 (771)
- ..-.||-+
T Consensus 526 D-~TvKIW~i 534 (775)
T KOG0319|consen 526 D-KTVKIWSI 534 (775)
T ss_pred C-ceEEEEEe
Confidence 3 33445543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.4e-05 Score=50.62 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.1
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCC
Q 004141 310 VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++........|.|||||++|+|.+++.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777888899999999999999999886
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0035 Score=70.93 Aligned_cols=97 Identities=13% Similarity=0.120 Sum_probs=61.0
Q ss_pred CeEEEEecCCCCCCeEEEEe-cCCcceEE-EecCCcccccccCCCcccceeecCCCCeEEE-EecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNPENESPIQFELW-SQSQLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 187 (771)
.+|||+.+.. + .+..++ ++.+.+.+ +.....+ -.|.|||||++||| ++.....
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4799987643 1 688888 55566555 4443333 48999999999999 6544311
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+.+.||+.|+.+.. +..|. -....+-.......|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 34789999987654 34441 122233334456777764 8888743
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0011 Score=69.14 Aligned_cols=159 Identities=23% Similarity=0.290 Sum_probs=86.6
Q ss_pred cCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
+.+....+++++|....++.+|-+ .-....+....|-|.++. ++.++... | .||.+|..
T Consensus 189 lIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~s-----G---------nlyly~~~ 250 (636)
T KOG2394|consen 189 LIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHAS-----G---------NLYLYDKE 250 (636)
T ss_pred EEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCc----eEEEEEec-----C---------ceEEeecc
Confidence 334455677777766555555410 111235677899998888 77776322 2 34444320
Q ss_pred c--c--------cchhhhhhhhcCCC--CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 289 L--Y--------KSEASELELKESSS--EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 289 ~--~--------~~~~~~~~~~~~~~--~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
- . .++....++.+.+. .-..+.+..-..+.+....|||||++||.++++. -|.++|.
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~f 319 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDF 319 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCc-----------eEEEeec
Confidence 0 0 00000111111111 1122233334455788899999999999999884 2666676
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+.+..-+.. ..|- ++--++||||||+|+ +...++-..+|.+.
T Consensus 320 dt~eLlg~mk--------------SYFG-----GLLCvcWSPDGKyIv-tGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 320 DTQELLGVMK--------------SYFG-----GLLCVCWSPDGKYIV-TGGEDDLVTVWSFE 362 (636)
T ss_pred cHHHHHHHHH--------------hhcc-----ceEEEEEcCCccEEE-ecCCcceEEEEEec
Confidence 6644322211 1233 344579999999774 44455566777654
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0051 Score=70.39 Aligned_cols=224 Identities=16% Similarity=0.216 Sum_probs=125.1
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
....+..+|+|+.++|+...-+ ....+|... ... .+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d-~~~-~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSD-GKT-VRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEEe-ccc-ccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4667899999999999987511 223344322 111 1112212222 5889999999999986222
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
. ...++|+++.. + .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 1 24789999988 4 33 233456778899999999
Q ss_pred ccEEEEEeecCcceeeee----------eeec-c-CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccce
Q 004141 255 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 322 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p 322 (771)
+++..-.....+.+. .+.. . ...++|.+|. .+ ....+......+..+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 998432222111111 1111 1 3457888886 33 555555666667778
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
+++++++.++......... ......+.....++....++.+.. +...+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDAD----PWVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccC----CceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 8888888777776654210 111223333323333333322211 2346678899997
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEE
Q 004141 403 MLLSSIWGS-----SQVIISVNVSSGELLR 427 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~ 427 (771)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 776665332 1235555534454444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0074 Score=62.64 Aligned_cols=154 Identities=17% Similarity=0.096 Sum_probs=85.4
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
....+|+|.++.....+ ......+.-+.+||||.. |+..+ .+..||++.++.
T Consensus 427 ~G~w~V~d~e~~~lv~~--~~d~~~ls~v~ysp~G~~----lAvgs---------------~d~~iyiy~Vs~------- 478 (626)
T KOG2106|consen 427 TGRWFVLDTETQDLVTI--HTDNEQLSVVRYSPDGAF----LAVGS---------------HDNHIYIYRVSA------- 478 (626)
T ss_pred cceEEEEecccceeEEE--EecCCceEEEEEcCCCCE----EEEec---------------CCCeEEEEEECC-------
Confidence 36789999998776666 333556778899999998 88876 223555555531
Q ss_pred hhhhcCCCCCCcceecCCCC-ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe-c
Q 004141 297 LELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP-V 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-~ 374 (771)
++....++-... ..+....||+|+++|.-.+.+ .+|..| ..++..+++.-. ++.- .
T Consensus 479 --------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d-----------~eiLyW--~~~~~~~~ts~k-DvkW~t 536 (626)
T KOG2106|consen 479 --------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD-----------YEILYW--KPSECKQITSVK-DVKWAT 536 (626)
T ss_pred --------CCcEEEEeeeecCceeEEeeecCCCceEEeccCc-----------eEEEEE--ccccCcccceec-ceeeee
Confidence 334444443222 457889999999987654432 455555 344444444311 1000 0
Q ss_pred ccccC-CCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 375 VQCAE-GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~-~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..+.- -.-|-|.....+...+-|.+.+ |+.+....+..+||++...
T Consensus 537 ~~c~lGF~v~g~s~~t~i~a~~rs~~~~-~lA~gdd~g~v~lf~yPc~ 583 (626)
T KOG2106|consen 537 YTCTLGFEVFGGSDGTDINAVARSHCEK-LLASGDDFGKVHLFSYPCS 583 (626)
T ss_pred eEEEEEEEEecccCCchHHHhhhhhhhh-hhhccccCceEEEEccccC
Confidence 00000 0001111222234445565655 5566666778888887653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00024 Score=70.23 Aligned_cols=138 Identities=14% Similarity=0.192 Sum_probs=86.5
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..|+++|+..+.+..- .--...-..++|+| +. ..|++ .+.+..||.+|.-
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~-------------a~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVA-------------ANEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceee-------------ccccccceehhhh-------
Confidence 457899999987765332 12233455789999 33 55665 2355589999971
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.-..+..+. ++-..+.++.|||.|+-++-.+.+. .|.++....+..+.+-...
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtk------ 313 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTK------ 313 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHh------
Confidence 112222222 2334588999999999998777765 3666665554443221110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
-...+..+.||-|+++| ++.+++++.+||.-+.
T Consensus 314 ------------RMq~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 314 ------------RMQHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred ------------hhheeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 01134567899999855 6777888889998654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.01 Score=61.88 Aligned_cols=170 Identities=12% Similarity=0.194 Sum_probs=97.2
Q ss_pred ccceEEEeCCC--CCeEEEEecCCCCCCeEEEEe--cCCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPS--GSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.++...+|||- +..|||..-...+......++ ..+.....-.+ ..++ .+.|.+.|++|.+...
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-----------qLkW~~~g~~ll~l~~ 242 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-----------QLKWQVLGKYLLVLVM 242 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-----------EEEEecCCceEEEEEE
Confidence 45788999996 445677654433444334444 11222111111 2233 7899999999999876
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...... .++. +...||++++....++.. ......+.+++|+|+++
T Consensus 243 t~~ksn-----------------Ksyf----------------gesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 243 THTKSN-----------------KSYF----------------GESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSS 287 (561)
T ss_pred Eeeecc-----------------ccee----------------ccceEEEEeeccccccee--ccccccceeeeecccCC
Confidence 543110 0000 237899999885554443 23345688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
+ .+.++-- -+..+-..|+ .+.-.-.+. ...-..+.|||.+++|+
T Consensus 288 ~----F~vi~g~-------------~pa~~s~~~l-----------------r~Nl~~~~P--e~~rNT~~fsp~~r~il 331 (561)
T COG5354 288 R----FAVISGY-------------MPASVSVFDL-----------------RGNLRFYFP--EQKRNTIFFSPHERYIL 331 (561)
T ss_pred c----eeEEecc-------------cccceeeccc-----------------ccceEEecC--CcccccccccCcccEEE
Confidence 9 7776511 2224555555 333212222 22234578999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+..-+.. ...+-++|..+
T Consensus 332 ~agF~nl--------~gni~i~~~~~ 349 (561)
T COG5354 332 FAGFDNL--------QGNIEIFDPAG 349 (561)
T ss_pred EecCCcc--------ccceEEeccCC
Confidence 9776542 23466666544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00096 Score=66.20 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=140.1
Q ss_pred ceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeecc
Q 004141 157 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVK 234 (771)
Q Consensus 157 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~ 234 (771)
..-+.|+...++..+++.+.+ .|+...++.......+..-...+.|...+.....-..+-.+.+||.++- ..+.+
T Consensus 113 ~v~~hp~~~~v~~as~d~tik--v~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~- 189 (406)
T KOG0295|consen 113 RVIFHPSEALVVSASEDATIK--VFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL- 189 (406)
T ss_pred eeeeccCceEEEEecCCceEE--EEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh-
Confidence 444556554444433444332 1222222222222333333344555555333333333444788887763 23333
Q ss_pred CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC
Q 004141 235 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 313 (771)
Q Consensus 235 ~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt 313 (771)
...+..+..+.+-|-|.. |+-.+ ++..|..+++ +++. ..+++
T Consensus 190 -~gh~h~vS~V~f~P~gd~----ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~ 232 (406)
T KOG0295|consen 190 -IGHEHGVSSVFFLPLGDH----ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFP 232 (406)
T ss_pred -cCcccceeeEEEEecCCe----eeecc---------------cccceeEEec-----------------ccceeEEecc
Confidence 455667889999999987 77655 4446778887 5565 45667
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+..-+...+.+-||+.|+-.+++. .|.+|-+.+++-+.+..+...+++.+........| ++..
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~ 296 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISE 296 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhh
Confidence 6666788999999999877666553 46667667765444433333333333222222222 2222
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
..-+.|+..++++.+++...++| |+.+|... .|......+...+|+|.|++|+-++.+ ..|.+.++...
T Consensus 297 at~~~~~~~~l~s~SrDktIk~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD----ktlrvwdl~~~ 366 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD----KTLRVWDLKNL 366 (406)
T ss_pred ccCCCCCccEEEeecccceEEEE--eccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC----CcEEEEEeccc
Confidence 33344566677888888777777 55577533 333444456778999999988766643 23556666544
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00032 Score=76.87 Aligned_cols=111 Identities=21% Similarity=0.191 Sum_probs=67.1
Q ss_pred CcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh------cCCCCccccchhhHHHHHHHHH
Q 004141 537 DPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------SLPGKVGSQDVNDVLTAIDHVI 608 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~------~~~~~~~~~~~~D~~~~i~~l~ 608 (771)
.|++|++-| -+..... ..........+.|-.|++.++|- ||.+... .+..-...+.++|+...++++.
T Consensus 29 gpifl~~gg-E~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGG-EGPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE---SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 788888754 2221100 01122333456799999999997 6665421 1111122345789999999988
Q ss_pred HcC-CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 609 DMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 609 ~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+. ..+..+++++|.|+||.+|+++-.++|+.+.++++.++++
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv 148 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPV 148 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--C
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEecccee
Confidence 653 2355699999999999999999999999999998887655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0059 Score=65.66 Aligned_cols=157 Identities=17% Similarity=0.196 Sum_probs=99.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-c--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-S--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...++|.+.++||..+..+ .+++| . +--...++..+. |..+.+++|++.|+ |..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g~~--------drsIE~L~W~e~~R-LFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHGPE--------DRSIESLAWAEGGR-LFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEecCC--------CCceeeEEEccCCe-EEeec----
Confidence 4578899999999999877654 56677 2 223344444422 22347999995554 54431
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|.-||+.+++.+.-. -.....+.+.+.+|-++.
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 3468899999988876552 223335667777787775
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
++.. |.+ +.|+.++. ..+.. +.|-...+.+.+..|+|+|.+|+
T Consensus 125 --l~Ig-------------cdd--Gvl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIG-------------CDD--GVLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEee-------------cCC--ceEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 5544 323 26666665 44432 22333346788999999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
-.+.+ ..|.+||...+..
T Consensus 171 ~Gs~D-----------g~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSID-----------GVIRIWDVKSGQT 188 (691)
T ss_pred ecccC-----------ceEEEEEcCCCce
Confidence 65544 3478888877664
|
|
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00023 Score=68.53 Aligned_cols=89 Identities=25% Similarity=0.448 Sum_probs=53.4
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
|||+||.... ....|......|.++||. |++++|-..... ....... .......++.++|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~~--~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNGS--PSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCHH--THHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCCC--Ccccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 8999996542 245788899999999999 899998542210 1111000 1112346777778877765 235
Q ss_pred eEEEEEcChhHHHHHHHHhh
Q 004141 617 KVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~ 636 (771)
+|-|+||||||.++-+++.-
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 89999999999999888753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0028 Score=69.60 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=69.7
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..-....|.++|..+.++.+.- ......+.++.|||||++ |+..+ -++.|..+|+
T Consensus 551 ~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisas---------------mD~tIr~wDl----- 605 (910)
T KOG1539|consen 551 IALDDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISAS---------------MDSTIRTWDL----- 605 (910)
T ss_pred hhcCceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEee---------------cCCcEEEEec-----
Confidence 3445678999999888765551 223447889999999999 99887 3457999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
.++...-...-...+.+.+|||.|..||....+. ..||+|.
T Consensus 606 ------------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ------------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ------------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 5555443333345578899999999999887663 3478774
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0063 Score=58.06 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=110.2
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCC-----cEEEEECCCCCCCC----ChhhhhcC-------CCCccccchhh
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSL-------PGKVGSQDVND 599 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G-----~~Vv~~d~rG~~~~----g~~~~~~~-------~~~~~~~~~~D 599 (771)
..| .||+||.++.. ..+...+..|...+ -.++.+|--|+-.. .....+.. ....+.....=
T Consensus 45 ~iP-TIfIhGsgG~a--sS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGTA--SSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCCh--hHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 345 67899966653 35556666665554 45667776664221 11111100 00011111233
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+..++.+|.++.. -.++-++||||||.....++..+.+ .+...|.+++.++...........+
T Consensus 122 lk~~msyL~~~Y~--i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN~~~l~~de~v~~---------- 189 (288)
T COG4814 122 LKKAMSYLQKHYN--IPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFNVGNLVPDETVTD---------- 189 (288)
T ss_pred HHHHHHHHHHhcC--CceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEecccccccccCCCcchhe----------
Confidence 5567788888864 4679999999999999999886521 2444454444433111111000000
Q ss_pred CCccCCCCC--ChhhHHHHhhcCcccccCCC--CCcEEEEeeCCC------CccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 675 GKDSFTESP--SVEDLTRFHSKSPISHISKV--KTPTIFLLGAQD------LRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 675 ~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D------~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.....+ .......|+.. ...++ .+-+|+|.|+-| -.||...+...+..|...+...+-.+|+|
T Consensus 190 ---v~~~~~~~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~G 262 (288)
T COG4814 190 ---VLKDGPGLIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKG 262 (288)
T ss_pred ---eeccCccccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeC
Confidence 000000 00011111111 11112 356999999865 45888888888888887766655545554
Q ss_pred --CCccCCCCCChHHHHHHHHHHHHH
Q 004141 745 --DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 --~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.|.-. +++. .+...+..||-+
T Consensus 263 k~a~Hs~l-hen~-~v~~yv~~FLw~ 286 (288)
T COG4814 263 KDARHSKL-HENP-TVAKYVKNFLWE 286 (288)
T ss_pred Ccchhhcc-CCCh-hHHHHHHHHhhc
Confidence 568644 3333 566777777743
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00086 Score=66.51 Aligned_cols=211 Identities=13% Similarity=0.068 Sum_probs=125.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-c---eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-L---EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
..+..++|+..|+.||-.+.+- . ..+|+..+ . +.+...... .+.+.|-|-|.+|+..+.+.
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h~----------vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEHG----------VSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCcccc----------eeeEEEEecCCeeeeccccc
Confidence 4588899999999988765432 1 33442221 1 111111222 26889999999998887776
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
..+ .|....+-.......+..|..-+....|+.-.........|.+|-+++++.+.+. ...+..+.-.+|.|....-
T Consensus 216 tik--~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 216 TIK--AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP 292 (406)
T ss_pred cee--EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc
Confidence 654 3433333333444555667766666777544445556789999999988654442 3334445556676653220
Q ss_pred ccEEEEEeecCcceeeeeee--eccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004141 255 HQYLVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.|-+.+ +...|..+ ...++..|-.+|+ .++. +-.|..+..-+.+.+|||-|++|
T Consensus 293 --~i~~at----~~~~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi 349 (406)
T KOG0295|consen 293 --SISEAT----GSTNGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYI 349 (406)
T ss_pred --chhhcc----CCCCCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEE
Confidence 011100 00000001 1124456777787 5554 35566777779999999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+-...+. .|.+||+++.+-
T Consensus 350 ~ScaDDk-----------tlrvwdl~~~~c 368 (406)
T KOG0295|consen 350 LSCADDK-----------TLRVWDLKNLQC 368 (406)
T ss_pred EEEecCC-----------cEEEEEecccee
Confidence 8887664 488999887654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.023 Score=57.13 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=83.4
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc
Q 004141 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS 317 (771)
Q Consensus 239 ~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~ 317 (771)
...+.++.|++ ... ++-++|.+ .|..+|+ .++. ...++ ...
T Consensus 260 t~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDl-----------------etg~~~~~~~-~~k 301 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDL-----------------ETGGLKSTLT-TNK 301 (423)
T ss_pred ccceeeEEEcC-CCc----eEeecccc---------------eEEEEEe-----------------ecccceeeee-cCc
Confidence 34678899998 333 55555533 5788888 4444 34444 344
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.......+|.-+.|+-.+.+ ..|.++|..++....+.. .|-| +..-+..+.|+
T Consensus 302 sl~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~g-H~nwVssvkws 354 (423)
T KOG0313|consen 302 SLNCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIG-HKNWVSSVKWS 354 (423)
T ss_pred ceeEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeec-chhhhhheecC
Confidence 56778889988877655544 358899987765422111 1112 11236688999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
|-..+++++.+.++...||-+.-..+-+..|....
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~ 389 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHN 389 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCC
Confidence 99999999999999999997665555566665543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0035 Score=65.40 Aligned_cols=167 Identities=12% Similarity=0.099 Sum_probs=101.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+-.|||||.-|+.+.++ ..|-+|.-.+--...+
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrsGMLRStl-- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRSGMLRSTV-- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEeccchHHHHH--
Confidence 577899999999887554 3556666433222223
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
......+..++|.|++.. ++|.. ..++++-.+. ...++.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~----------------g~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQ----------------GGHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEec----------------CCeEEEeecc----------------cccceeEEecc
Confidence 334456778999999999 99974 1278887772 33455666678
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+-+.+..|||....|+-...+ .+-.+||..+... .++.. ..+ -+.+++
T Consensus 186 DGiiL~~~W~~~s~lI~sgGED-----------~kfKvWD~~G~~L--f~S~~------------~ey------~ITSva 234 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIASGGED-----------FRFKIWDAQGANL--FTSAA------------EEY------AITSVA 234 (737)
T ss_pred CcEEEEeecCccccceeecCCc-----------eeEEeecccCccc--ccCCh------------hcc------ceeeee
Confidence 8889999999998876643322 3455666443222 22111 111 256888
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|.|| + +|.. |.++. -++.. ..+.+....||+||.++.+..
T Consensus 235 ~npd-~-~~~v---------~S~nt-----~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 235 FNPE-K-DYLL---------WSYNT-----ARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred eccc-c-ceee---------eeeee-----eeecCCCccceEEEEEcCCCceeeccc
Confidence 9999 3 4332 22221 11322 233455678888888776544
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00021 Score=76.60 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=64.6
Q ss_pred CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 553 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 553 ~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
..|...++.|.+.||.+ ..|++| +|.+|+... .....++++.+.++.+.+.. ...+|.|+||||||.++..
T Consensus 108 ~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 108 YYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 45778899999999876 789998 666665421 11223566777777766552 3468999999999999999
Q ss_pred HHhhCCCc----eeEEEecCCcc
Q 004141 633 LIGQAPDK----FVAAAARNPLC 651 (771)
Q Consensus 633 ~a~~~p~~----~~~~v~~~p~~ 651 (771)
++..+|+. ++.+|++++..
T Consensus 179 fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHCCHhHHhHhccEEEECCCC
Confidence 99888763 56667666533
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.027 Score=58.64 Aligned_cols=260 Identities=12% Similarity=0.094 Sum_probs=135.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|.++|+-|- . ++...+.+| .++. +++.......| .+.++.--.||+.|- ...+. +
T Consensus 247 k~Vl~v~F~engdviT--g----DS~G~i~Iw~~~~~--~~~k~~~aH~g------gv~~L~~lr~GtllS-GgKDR--k 309 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVIT--G----DSGGNILIWSKGTN--RISKQVHAHDG------GVFSLCMLRDGTLLS-GGKDR--K 309 (626)
T ss_pred eEEEEEEEcCCCCEEe--e----cCCceEEEEeCCCc--eEEeEeeecCC------ceEEEEEecCccEee-cCccc--e
Confidence 4578889999998653 1 333467778 3332 22211111112 225777888887554 22211 1
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
-..|+....+..+. +-+......-..-+..++.+++..++.|..=.++++-...+. -.......++-.|+...
T Consensus 310 i~~Wd~~y~k~r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~--gh~delwgla~hps~~q---- 382 (626)
T KOG2106|consen 310 IILWDDNYRKLRET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ--GHGDELWGLATHPSKNQ---- 382 (626)
T ss_pred EEeccccccccccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE--ecccceeeEEcCCChhh----
Confidence 23344222211111 101111111112233355777777777777677666433331 11124556777888776
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
++..+- ..++.+++- .--+-.++.. .......|.|-| .|+.-...
T Consensus 383 ~~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~--d~~~~~~fhpsg-~va~Gt~~ 427 (626)
T KOG2106|consen 383 LLTCGQ---------------DKHVRLWND-----------------HKLEWTKIIE--DPAECADFHPSG-VVAVGTAT 427 (626)
T ss_pred eeeccC---------------cceEEEccC-----------------CceeEEEEec--CceeEeeccCcc-eEEEeecc
Confidence 665541 123444431 1122233333 235667899999 66654433
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
.+.+++|.++.....+-... ..+.-+.|+|||..|.+. +.++...||+
T Consensus 428 -----------G~w~V~d~e~~~lv~~~~d~--------------------~~ls~v~ysp~G~~lAvg-s~d~~iyiy~ 475 (626)
T KOG2106|consen 428 -----------GRWFVLDTETQDLVTIHTDN--------------------EQLSVVRYSPDGAFLAVG-SHDNHIYIYR 475 (626)
T ss_pred -----------ceEEEEecccceeEEEEecC--------------------CceEEEEEcCCCCEEEEe-cCCCeEEEEE
Confidence 35778887764432221110 124567899999977554 5567778999
Q ss_pred EECCCCcEEEecCCCC-CceeeEEeecCCEEEE
Q 004141 418 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~ 449 (771)
++.++.+..++-.-.+ .+....||+|++.+.-
T Consensus 476 Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 476 VSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred ECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 9987767666644332 3344578888886653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=69.60 Aligned_cols=199 Identities=17% Similarity=0.153 Sum_probs=106.7
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecC
Q 004141 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEE 173 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~ 173 (771)
..+.+...+||.++ +|+-.+.+. ...+|.- .+..+++....-+ .+++|.| |.++++-.+
T Consensus 368 Ht~DILDlSWSKn~-fLLSSSMDK-----TVRLWh~~~~~CL~~F~HndfV----------TcVaFnPvDDryFiSGS-- 429 (712)
T KOG0283|consen 368 HTADILDLSWSKNN-FLLSSSMDK-----TVRLWHPGRKECLKVFSHNDFV----------TCVAFNPVDDRYFISGS-- 429 (712)
T ss_pred cchhheecccccCC-eeEeccccc-----cEEeecCCCcceeeEEecCCee----------EEEEecccCCCcEeecc--
Confidence 33457788888876 343444333 4566622 2223344333333 6999999 566555432
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
-+.-+.+|++...++..- ..-...+..+.++|||+.
T Consensus 430 ------------------------------------------LD~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 430 ------------------------------------------LDGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKG 465 (712)
T ss_pred ------------------------------------------cccceEEeecCcCeeEee--hhhhhhheeEEeccCCce
Confidence 234567777776666555 344456889999999996
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC----CccccceeecCCC-
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES----ISSAFFPRFSPDG- 328 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~----~~~~~~p~~SpDG- 328 (771)
.+..+ ++..+.+|... +. +. .......++.. ...+....|.|--
T Consensus 466 ----avIGt-------------~~G~C~fY~t~--~l-------k~-----~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 466 ----AVIGT-------------FNGYCRFYDTE--GL-------KL-----VSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred ----EEEEE-------------eccEEEEEEcc--CC-------eE-----EEeeeEeeccCccccCceeeeeEecCCCC
Confidence 55544 33333444321 00 00 00011111110 1135556665422
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC-CCCCCccccCCCEEEEEe
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~-~~~~~~~s~Dg~~l~~~~ 407 (771)
..|+.++++ ++|.++|+......... .|.... +.....|+.||++|+..+
T Consensus 515 ~~vLVTSnD-----------SrIRI~d~~~~~lv~Kf------------------KG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 515 DEVLVTSND-----------SRIRIYDGRDKDLVHKF------------------KGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred CeEEEecCC-----------CceEEEeccchhhhhhh------------------cccccCCcceeeeEccCCCEEEEee
Confidence 256666665 46899987554443222 221111 234667999999998776
Q ss_pred eeCCeeEEEEE
Q 004141 408 IWGSSQVIISV 418 (771)
Q Consensus 408 ~~~~~~~l~~~ 418 (771)
.+....||.+
T Consensus 566 -eDs~VYiW~~ 575 (712)
T KOG0283|consen 566 -EDSWVYIWKN 575 (712)
T ss_pred -cCceEEEEeC
Confidence 4555556654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0018 Score=65.59 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV 104 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~ 104 (771)
+.+.++|+.|..+-.= +.++|..+..-++.+..++.++.++.+.-.. . -.+...-+.+...
T Consensus 132 ~~~a~v~~~l~~~g~~-------------k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t--~----l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 132 ETAANVYQKLVDFGQQ-------------KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT--I----LEEIAHHAEVKDL 192 (398)
T ss_pred hhhhhHhHHHhhcCcc-------------eEEEEcCCCCEeeeccccceEEEEecCcchh--h----hhhHhhcCccccc
Confidence 3566677666543322 2333333333344445556777765422211 0 1112222457789
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEecCCCCCCCCc
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~~~~~~~~~~ 181 (771)
.|||||+.|+++... ...+|.+.++-...+.++... |.-|....|+-|+ ...++....+...
T Consensus 193 ~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~t~~~k--------~~~~~~cRF~~d~~~~~l~laa~~~~~~~---- 257 (398)
T KOG0771|consen 193 DFSPDGKFLASIGAD---SARVWSVNTGAALARKTPFSK--------DEMFSSCRFSVDNAQETLRLAASQFPGGG---- 257 (398)
T ss_pred eeCCCCcEEEEecCC---ceEEEEeccCchhhhcCCccc--------chhhhhceecccCCCceEEEEEecCCCCc----
Confidence 999999999998653 233443333323333333222 2235678899887 3233322221110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
.....+.+|+-. -...++. +.....+..+.-|+||+. ++.
T Consensus 258 ---------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dGkf----~Al 298 (398)
T KOG0771|consen 258 ---------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDGKF----LAL 298 (398)
T ss_pred ---------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCCcE----EEE
Confidence 011334444322 1122223 444557889999999997 887
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+.+ ..+-+++. ..-+..++. .+...+....||||.++++-++.+.
T Consensus 299 GT~d---------------GsVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 299 GTMD---------------GSVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eccC---------------CcEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 7642 24555554 233333332 2445789999999999998777654
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=71.73 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=78.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH----------------HHHHHHHCCcEEEEECCC-CCCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------------SLAFLSSVGYSLLIVNYR-GSLGF 580 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~----------------~~~~la~~G~~Vv~~d~r-G~~~~ 580 (771)
+..+..|++...+ .....|+|++++|||+.+....... ....+. +-..++.+|.+ | .|+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~-~~~~~l~iDqP~G-~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWN-NEAYVIYVDQPAG-VGF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccc-cccCeEEEeCCCC-cCc
Confidence 4568888888764 3456899999999998653211000 000111 22577788865 5 233
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhC----------CCceeEEEecCC
Q 004141 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~----------p~~~~~~v~~~p 649 (771)
+...... .........+|+..+++.+.++ +.....++.|+|+||||..+..++.+- .-.++++++.+|
T Consensus 136 S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 3321111 0111122367777777765544 334568899999999999888776541 113688988888
Q ss_pred ccch
Q 004141 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 7754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.002 Score=60.89 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=134.0
Q ss_pred eEEEeCCC-CCeEEEEecC-C--CCCCeEEEEe-cCCcceEEEe---cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 102 SAVVPSPS-GSKLLVVRNP-E--NESPIQFELW-SQSQLEKEFH---VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 102 ~~~~~SPd-G~~la~~~~~-~--~~~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
....|||= ..+||..... - .+...++++. ++....++.. ..... -.++||+.-..+++++..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~L----------fdV~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGL----------FDVAWSENHENQVIAASG 81 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccce----------eEeeecCCCcceEEEEec
Confidence 46788882 2234443322 1 1455677776 3333233222 12222 388999988888877643
Q ss_pred CCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCC
Q 004141 174 PSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg 251 (771)
... ...|+.... ......+.++.-.....|.+-+++.+ +..-+..|-+|+...++-...- ......+-++.|||--
T Consensus 82 DGS-Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~ 159 (311)
T KOG0277|consen 82 DGS-LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHI 159 (311)
T ss_pred Cce-EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCC
Confidence 321 112331111 11222333333333333444333332 2233567777877655433221 3455678899999976
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
.. ++-... .++.+-++|+. ..|+...+..+...+....||.-...+
T Consensus 160 ~n----lfas~S--------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~v 205 (311)
T KOG0277|consen 160 PN----LFASAS--------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHNV 205 (311)
T ss_pred CC----eEEEcc--------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCcE
Confidence 65 544331 22344444442 335554466666678888999877777
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
++++..+ .-|+.||+..=.. .+ ..+. + +...+..+.|||-...|+.+.+.+.
T Consensus 206 l~Tg~vd----------~~vr~wDir~~r~-pl-------~eL~-----g-----h~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 206 LATGGVD----------NLVRGWDIRNLRT-PL-------FELN-----G-----HGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EEecCCC----------ceEEEEehhhccc-cc-------eeec-----C-----CceEEEEEecCcchhhHhhhccccc
Confidence 7776543 3577888754221 11 0000 0 0012457789999998999998888
Q ss_pred eeEEEEEECCCCcEEE
Q 004141 412 SQVIISVNVSSGELLR 427 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~ 427 (771)
..+||......+.++.
T Consensus 258 T~riw~~~~~ds~~e~ 273 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIET 273 (311)
T ss_pred eEEecccccchhhhhh
Confidence 8888865543443333
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0061 Score=61.34 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=88.6
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004141 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
....++.+.|.|-... +++++- .+..|.++++ .+|+ ...|. +.
T Consensus 130 H~rrVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hp 173 (472)
T KOG0303|consen 130 HQRRVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HP 173 (472)
T ss_pred cceeEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CC
Confidence 3446888999999887 777651 2237888887 6665 45555 77
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
..+.+..|+-||+.|+....+. .|.++|..+++.... +. ...+ .......|
T Consensus 174 d~i~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~v~e--~~---------~heG-------~k~~Raif 224 (472)
T KOG0303|consen 174 DMVYSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTVVSE--GV---------AHEG-------AKPARAIF 224 (472)
T ss_pred CeEEEEEeccCCceeeeecccc-----------eeEEEcCCCCcEeee--cc---------cccC-------CCcceeEE
Confidence 7899999999999998777654 588999877664211 10 0001 12345668
Q ss_pred ccCCCEEEEEee--eCCeeEEEEEECCC----CcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 397 LSDGCTMLLSSI--WGSSQVIISVNVSS----GELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 397 s~Dg~~l~~~~~--~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
..+|+ | +++. ..+..++-.+|.+. +-.+.|..+.+ +-.+.+++|.+.||.+.
T Consensus 225 l~~g~-i-~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 225 LASGK-I-FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLPFYDPDTSIVYLCG 282 (472)
T ss_pred eccCc-e-eeeccccccccceeccCcccccCcceeEEeccCCc-eEEeeecCCCCEEEEEe
Confidence 88988 4 4443 22333444445432 12333333333 44566777777666554
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=64.89 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+-++|.++-++..- +.-........++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 46777888887655332 122224566789999996 65554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0043 Score=65.91 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=73.1
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+.++.|.|=... ++.++ ..+..|-++|+. +....-+|..+.+.+.
T Consensus 679 KI~slRfHPLAad----vLa~a--------------syd~Ti~lWDl~----------------~~~~~~~l~gHtdqIf 724 (1012)
T KOG1445|consen 679 KITSLRFHPLAAD----VLAVA--------------SYDSTIELWDLA----------------NAKLYSRLVGHTDQIF 724 (1012)
T ss_pred eEEEEEecchhhh----Hhhhh--------------hccceeeeeehh----------------hhhhhheeccCcCcee
Confidence 4667778775544 43333 133467777871 3445677888888999
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
+.+|||||+.|+.+-.+. .|++++...++. .+.++...+ ...-..+.|.=||
T Consensus 725 ~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~-pv~Eg~gpv----------------gtRgARi~wacdg 776 (1012)
T KOG1445|consen 725 GIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQ-PVYEGKGPV----------------GTRGARILWACDG 776 (1012)
T ss_pred EEEECCCCcceeeeecCc-----------eEEEeCCCCCCC-ccccCCCCc----------------cCcceeEEEEecC
Confidence 999999999999887653 488887665443 222222110 0112356798899
Q ss_pred CEEEEEeeeC-CeeEEEEEECCC
Q 004141 401 CTMLLSSIWG-SSQVIISVNVSS 422 (771)
Q Consensus 401 ~~l~~~~~~~-~~~~l~~~d~~t 422 (771)
+.|+++.-.. +..+|-++|..+
T Consensus 777 r~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 777 RIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred cEEEEecccccchhhhhhhhhhh
Confidence 9887765433 233344445433
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00025 Score=47.69 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=24.2
Q ss_pred ceeecCCccccccceEEEeCCCCCeEEEEecCCC-CCCeEE
Q 004141 88 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 127 (771)
Q Consensus 88 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 127 (771)
|+|..+ +.+..|+|||||++|+|++++.+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455554 56889999999999999998762 444444
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0014 Score=65.33 Aligned_cols=143 Identities=18% Similarity=0.188 Sum_probs=91.4
Q ss_pred ceEEEEEccCCceeec-cCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAV-KGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+||++|+..=++..- ..+ +...+...++.++.+-+ |+|-+. ...++|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~y----lAyp~s-------------~t~GdV~l~d~~------- 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCY----LAYPGS-------------TTSGDVVLFDTI------- 161 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCce----EEecCC-------------CCCceEEEEEcc-------
Confidence 4699999987654332 112 22223444444445556 888752 234588898872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
+-.....+..+.+.....+|||||+.||..+... .-|.++....|+... +
T Consensus 162 ---------nl~~v~~I~aH~~~lAalafs~~G~llATASeKG----------TVIRVf~v~~G~kl~--e--------- 211 (391)
T KOG2110|consen 162 ---------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKG----------TVIRVFSVPEGQKLY--E--------- 211 (391)
T ss_pred ---------cceeeeEEEecCCceeEEEECCCCCEEEEeccCc----------eEEEEEEcCCccEee--e---------
Confidence 2233445557788889999999999999988764 346677766655311 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
=..|.++.++.+++|+||+..|..+ +.....++|.++..
T Consensus 212 ------FRRG~~~~~IySL~Fs~ds~~L~~s-S~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 212 ------FRRGTYPVSIYSLSFSPDSQFLAAS-SNTETVHIFKLEKV 250 (391)
T ss_pred ------eeCCceeeEEEEEEECCCCCeEEEe-cCCCeEEEEEeccc
Confidence 0123455567899999999966544 45677889988753
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0049 Score=63.04 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=45.4
Q ss_pred ccceeecCCCCEEEEEecC---CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 319 AFFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~---~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
....+..|||+ |+|.... ... ........||++|..++..+.+.... .....++
T Consensus 113 ~ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~--------------------~~~NGla 169 (307)
T COG3386 113 PNDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL--------------------TIPNGLA 169 (307)
T ss_pred CCceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE--------------------EecCceE
Confidence 34568899998 6777766 110 11112237999986433332221111 0236889
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
||||++++|++-+.. ..|++++.+
T Consensus 170 ~SpDg~tly~aDT~~--~~i~r~~~d 193 (307)
T COG3386 170 FSPDGKTLYVADTPA--NRIHRYDLD 193 (307)
T ss_pred ECCCCCEEEEEeCCC--CeEEEEecC
Confidence 999999888876544 356666554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0097 Score=63.11 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=136.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE-ecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~-~~~~~~ 176 (771)
.+..++..|.|.+||--++. + .+.+| .+|...+.+.+...+ .+++|+|.+..=+.+ +....
T Consensus 402 ~Vr~iSvdp~G~wlasGsdD--G---tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDD--G---TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eEEEEEecCCcceeeecCCC--C---cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc-
Confidence 46778899999999865443 3 45555 456666666665554 699999998763332 22211
Q ss_pred CCCCccCCCC------CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc------CCceeeccCCCCCCccce
Q 004141 177 SKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ------SGEVQAVKGIPKSLSVGQ 244 (771)
Q Consensus 177 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~------~~~~~~l~~~~~~~~~~~ 244 (771)
........+ .+...+.... . . .....++..|.-. .+ +... +.....+.+
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~--~---~----------~~p~~~~~~W~~~~~~e~~~~-v~~~--I~~~k~i~~ 526 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAP--N---E----------SEPDAAVVTWSRASLDELEKG-VCIV--IKHPKSIRQ 526 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCC--C---c----------cCCcccceeechhhhhhhccc-eEEE--EecCCccce
Confidence 000111111 0000000000 0 0 0011234444322 22 2222 344456889
Q ss_pred EEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceee
Q 004141 245 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 324 (771)
Q Consensus 245 ~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~ 324 (771)
+.|.-+|.+ |+.+.-.. .+..+++.+|+ .......+....+.+....|
T Consensus 527 vtWHrkGDY----latV~~~~------------~~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 527 VTWHRKGDY----LATVMPDS------------GNKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVKF 574 (733)
T ss_pred eeeecCCce----EEEeccCC------------CcceEEEEecc----------------cccccCchhhcCCceeEEEe
Confidence 999999999 99887332 23378888873 22222344455667888999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC-CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 325 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
.|---+|+..+.+ .+.+||+..+... .+.++. ..+..++.+|.|.-|
T Consensus 575 HPs~p~lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 575 HPSKPYLFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDNL 622 (733)
T ss_pred cCCCceEEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCeE
Confidence 9988777655543 3888888764431 111111 135577788988888
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
++.+. +...--|-+|+.+.-.+.+......+ ...+-.+++=+|+..+.+..-.++.
T Consensus 623 i~gs~-d~k~~WfDldlsskPyk~lr~H~~av--r~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 623 ILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAV--RSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred EEecC-CCeeEEEEcccCcchhHHhhhhhhhh--hhhhhccccceeeeecCCCcEEEEe
Confidence 76653 33333333455444444443322211 2223344444554444444443443
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.091 Score=48.91 Aligned_cols=130 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.++.||+-|- ..| ....++.+.+.+.. -+|-.|-.++-.+.+ ..|..||+
T Consensus 161 gdc~iy~tdc-----------------~~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdl 211 (350)
T KOG0641|consen 161 GDCKIYITDC-----------------GRGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDL 211 (350)
T ss_pred CcceEEEeec-----------------CCCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEee
Confidence 4568999987 333 35566666665443 223345544433333 34777776
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCc
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNF 435 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~ 435 (771)
.-....+ ++.. +..-.|+-...+..++.-|.|+ |+.+...++.--|| |+.+|. +++.-+...++
T Consensus 212 rv~~~v~----------~l~~--~~~~~glessavaav~vdpsgr-ll~sg~~dssc~ly--dirg~r~iq~f~phsadi 276 (350)
T KOG0641|consen 212 RVNSCVN----------TLDN--DFHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLY--DIRGGRMIQRFHPHSADI 276 (350)
T ss_pred eccceee----------eccC--cccCCCcccceeEEEEECCCcc-eeeeccCCCceEEE--EeeCCceeeeeCCCccce
Confidence 5433211 1110 0011112222345667778887 55665555555666 555665 44555555566
Q ss_pred eeeEEeecCCEEEEEE
Q 004141 436 SWSLLTLDGDNIIAVS 451 (771)
Q Consensus 436 ~~~~~s~dg~~l~~~~ 451 (771)
....|||...+++..+
T Consensus 277 r~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCS 292 (350)
T ss_pred eEEEeCCCceEEEEec
Confidence 6778888777666544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.046 Score=64.91 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=49.3
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.||+-+ |+..... -+-+.-...++|-|.|.. |+.+....+ + ..|..+.-
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q~~~~-~-----------~~VvFfEr--------- 288 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQRLPD-R-----------HDVVFFER--------- 288 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEEEcCC-C-----------cEEEEEec---------
Confidence 4678888876 4544442 122334567899999997 777653111 1 13333332
Q ss_pred hhhhcCCCCCCcc--eec--CCCCccccceeecCCCCEEEEEec
Q 004141 297 LELKESSSEDLPV--VNL--TESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 297 ~~~~~~~~~~~~~--~~l--t~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+|-+. -.| ......+....||+|+..||..-.
T Consensus 289 --------NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 289 --------NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred --------CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 22111 112 233445788999999999988663
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0094 Score=60.76 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=112.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+......|.|++++..++++ .|.+.+-.....++.+. .++ .+.+..|.||| |+|.......
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDg--Lifgtgt~d~ 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDG--LIFGTGTPDG 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCc--eEEeccCCCc
Confidence 367778899999998877655 55555322223333321 222 23588999999 4454433332
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....|+........++..+......+.|++++=...+...+..+.+||+..-+ .+.+. .+....+..+.|-+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 23356544444445555566666677788874344444455669999986544 22222 344446778889888987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+ ..-+||.++- ++- .-.+...+....+....++|..+.++++-.+
T Consensus 447 --L~~~g---------------~~l~Vy~~~k-----~~k---------~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 447 --LGIAG---------------SDLQVYICKK-----KTK---------SWTEIKELADHSGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred --EEeec---------------ceeEEEEEec-----ccc---------cceeeehhhhcccccceeeecccceEEeecc
Confidence 77654 1226777763 000 1123444555555667788888888777666
Q ss_pred cCC
Q 004141 336 AKS 338 (771)
Q Consensus 336 ~~~ 338 (771)
++.
T Consensus 496 md~ 498 (506)
T KOG0289|consen 496 MDA 498 (506)
T ss_pred chh
Confidence 553
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=63.23 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=103.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..++.-+.||||++||+..-. ...+|.+...+ ..+++.+....... -.-..+.|+-|+.++++++.
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~---~~~iy~L~~~~-~vk~~~v~~~~~~~----~~a~~i~ftid~~k~~~~s~------ 448 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS---RTKIYRLQPDP-NVKVINVDDVPLAL----LDASAISFTIDKNKLFLVSK------ 448 (691)
T ss_pred cceeeeccCCCCCEEEEeecc---ceEEEEeccCc-ceeEEEeccchhhh----ccceeeEEEecCceEEEEec------
Confidence 457778899999999996532 23477776322 23333321111000 00147889999999999862
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC---CCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG---IPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~---~~~~~~~~~~~wspDg~~~~ 255 (771)
...+|.++++++...+.+.+ .+....+..++-||||++
T Consensus 449 -------------------------------------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 449 -------------------------------------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred -------------------------------------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 22567777777766555521 222346778899999999
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCC-CEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDG-KFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG-~~l~f 333 (771)
|+..+ ..+.|+++++ ++.+.+.|. .-...++...++|.- +.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 99876 3348999998 777776665 333456777888544 45554
Q ss_pred EecCCCCCCCCccccccceeeecCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... .+|++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 443 3579999985444
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=66.63 Aligned_cols=98 Identities=12% Similarity=0.019 Sum_probs=57.8
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccce-eecCCccccccceEEEeCCCCCeEEE-EecCC-CCCCeEEEEec
Q 004141 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTF-QWAPFPVEMTGASAVVPSPSGSKLLV-VRNPE-NESPIQFELWS 131 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~~~~~~~~~SPdG~~la~-~~~~~-~~~~~~~~~~~ 131 (771)
+|+|..+.+ +.|.+.|. ++.+++.+ +... ..+..|.|||||++||| ++-.. .++..+|+...
T Consensus 320 kiAfv~~~~--------~~L~~~D~--dG~n~~~ve~~~~-----~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L 384 (912)
T TIGR02171 320 KLAFRNDVT--------GNLAYIDY--TKGASRAVEIEDT-----ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNL 384 (912)
T ss_pred eEEEEEcCC--------CeEEEEec--CCCCceEEEecCC-----CceecCcCCCCCCEEEEEEeecCCCCCceEEEEeh
Confidence 677775421 27777665 44455555 4343 45788999999999999 54332 15677888772
Q ss_pred --CC-cceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCCCCC
Q 004141 132 --QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPS 177 (771)
Q Consensus 132 --~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~~~ 177 (771)
.+ .+.++ ++.... +......+.|. .|+|++....++
T Consensus 385 ~t~~~~~vkl-~ve~aa---------iprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 385 NASGSGLVKL-PVENAA---------IPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred hccCCCceEe-eccccc---------ccceEecCCCCeEEEEEcCCCCCc
Confidence 22 22222 332221 13555667554 588888766554
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.036 Score=56.97 Aligned_cols=151 Identities=16% Similarity=0.130 Sum_probs=95.4
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|.+||+.+ .++.... -.....+..++|+|=+.. |+.++. -+..|.++|+-
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlR------- 303 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLR------- 303 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeech-------
Confidence 6899999884 3333331 223456788999998887 766652 23368888872
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEe
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 373 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~ 373 (771)
+ -......+..+...+..+.|||.-..+.-.+..+ .+|.+||+..-+..+......+ ..-
T Consensus 304 n--------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 304 N--------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred h--------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 1 1224555666777899999999998876666443 4688999865443332111100 000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
++.. |-+...+..+.|.|+.-.++.+.+.++..+||.+.
T Consensus 366 lF~H-------gGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFIH-------GGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEEe-------cCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0000 01223467889999999999999988888888764
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.075 Score=51.97 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=69.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.++..+|||.-..++..+.- ++.-.+|++...|....-. ..... ++....+||.||.+++..+
T Consensus 29 sIS~l~FSP~~~~~~~A~SW-D~tVR~wevq~~g~~~~ka--~~~~~------~PvL~v~WsddgskVf~g~-------- 91 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSW-DGTVRIWEVQNSGQLVPKA--QQSHD------GPVLDVCWSDDGSKVFSGG-------- 91 (347)
T ss_pred chheeEeccccCceEEeccc-CCceEEEEEecCCcccchh--hhccC------CCeEEEEEccCCceEEeec--------
Confidence 47889999955555433333 3666778777544332211 11111 2236899999998766543
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
.+.++-+||+.++++..+ -..+..+....|-+-..+ +.|+
T Consensus 92 ------------------------------------~Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 92 ------------------------------------CDKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred ------------------------------------cCCceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 235778999999999998 566777888888776552 2256
Q ss_pred EEeecCc
Q 004141 260 FVGWSSE 266 (771)
Q Consensus 260 ~~~~~~~ 266 (771)
..+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 6666443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.041 Score=53.62 Aligned_cols=56 Identities=21% Similarity=0.455 Sum_probs=36.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+.+.||+.||.+.+. .+++. ... ....-.+++.+.+- ....++||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~P------QWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPNP------QWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCCc------hheEEEECCCCcEEEEE
Confidence 35779999999998654 45555 221 22233345444421 22588999999999996
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.058 Score=58.50 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=72.6
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 320 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~ 320 (771)
.+..++.||+|+- |+ ++.+... -....|++++.. .-.+...|..+.-.+.
T Consensus 527 Ev~~l~~s~~gnl----iA-SaCKS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGNL----IA-SACKSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCCE----Ee-ehhhhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 4557788888884 44 4422221 123467777751 2233456777888899
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
..+|||||++|+-.+.+. ...||.. ..+..-... + .+-..+..-+-...|+||+
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~---------f------a~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFR---------F------ACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhh---------h------ccccccceEEEEcccCccc
Confidence 999999999999998876 2345543 111110000 0 0000011123356899999
Q ss_pred CEEEEEeeeCCeeEEEEEEC
Q 004141 401 CTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~ 420 (771)
++ +++++++....+|...-
T Consensus 631 ~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 631 KY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred ce-eEEecCCceEEEEeccC
Confidence 97 67777788888888753
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0013 Score=65.24 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=63.6
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCCe
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSK 617 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~r 617 (771)
.|+++|+++++ ...|..+++.+....+.|+.++++|... . ......++++.+. ++.+.+.. ...+
T Consensus 2 ~lf~~p~~gG~--~~~y~~la~~l~~~~~~v~~i~~~~~~~---~-------~~~~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGGS--ASSYRPLARALPDDVIGVYGIEYPGRGD---D-------EPPPDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTCS--GGGGHHHHHHHTTTEEEEEEECSTTSCT---T-------SHEESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCccC--HHHHHHHHHhCCCCeEEEEEEecCCCCC---C-------CCCCCCHHHHHHHHHHHhhhhC--CCCC
Confidence 58899997765 4578888888865569999999998431 0 1112234444433 33444432 2238
Q ss_pred EEEEEcChhHHHHHHHHhhC---CCceeEEEecCC
Q 004141 618 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 649 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p 649 (771)
+.|+|||+||.+|..+|.+- ...+..++++.+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988642 334667776663
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.069 Score=52.49 Aligned_cols=154 Identities=18% Similarity=0.259 Sum_probs=90.2
Q ss_pred cccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC--eEEEE
Q 004141 39 SIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVV 116 (771)
Q Consensus 39 ~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~ 116 (771)
.+..-..|+++ -|..=+.+.+.+-++.+..+-.|.++|+..... + +.+-...+.+....|+|+-. .|+-.
T Consensus 32 ~l~~lF~~~aH--~~sitavAVs~~~~aSGssDetI~IYDm~k~~q----l--g~ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 32 TLKPLFAFSAH--AGSITALAVSGPYVASGSSDETIHIYDMRKRKQ----L--GILLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeecccccccc--ccceeEEEecceeEeccCCCCcEEEEeccchhh----h--cceeccccceEEEEecCCcchhheeee
Confidence 33333445544 444445556667777777778889988754321 1 11122236688888888876 56554
Q ss_pred ecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004141 117 RNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++ .+.+|+.+.-..+-.+ ....+.| ..++..|-||.-+-+.
T Consensus 104 sdDG-----~i~iw~~~~W~~~~sl-K~H~~~V------t~lsiHPS~KLALsVg------------------------- 146 (362)
T KOG0294|consen 104 SDDG-----HIIIWRVGSWELLKSL-KAHKGQV------TDLSIHPSGKLALSVG------------------------- 146 (362)
T ss_pred cCCC-----cEEEEEcCCeEEeeee-ccccccc------ceeEecCCCceEEEEc-------------------------
Confidence 4433 5667754444222222 1122223 6899999997444432
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
++..|..||+-.|+.-.+ .+-.-....+.|+|.|.+ .+.+.
T Consensus 147 -------------------~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -------------------GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -------------------CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 236788899887775554 233334455899999998 66665
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=56.58 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=103.7
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhH
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 600 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~ 600 (771)
.|+..|+ ++. .||.+-||.+....+ .|+...+.|+++||.|++.-|.-.-.|.. ........+
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~---------~A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQA---------IAREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHH---------HHHHHHHHH
Confidence 3666665 233 455555766544333 67788999999999999999975322211 111123455
Q ss_pred HHHHHHHHHcCCCCCC--eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCcc
Q 004141 601 LTAIDHVIDMGLANPS--KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~--ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
..+++.+..+...+.. +++-+|||+|+-+-+.+...++..-++-++++= -+.. ....++- .+.+.... .
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSF-NN~~---a~~aIP~---~~~l~~~l--~ 143 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISF-NNFP---ADEAIPL---LEQLAPAL--R 143 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEec-CChH---HHhhCch---Hhhhcccc--c
Confidence 5666666665443332 688899999999988877665433343333221 1100 0001111 11111111 1
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC-EEEEEeCCCCcc
Q 004141 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE-TKVIVFPNDVHG 748 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~-~~~~~~~~~~H~ 748 (771)
..-.|.++....+.+.+- .-...|+|-=.+|.+ .++..+.+.|+.+... ++....+| .|-
T Consensus 144 ~EF~PsP~ET~~li~~~Y------~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 144 LEFTPSPEETRRLIRESY------QVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cCccCCHHHHHHHHHHhc------CCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 122233343333322211 123467777777766 5778888888876333 56666764 784
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.03 Score=53.34 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=65.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CC--cEEEEECCCCCCCCChhhhhcCCCC-cc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG--YSLLIVNYRGSLGFGEEALQSLPGK-VG 593 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G--~~Vv~~d~rG~~~~g~~~~~~~~~~-~~ 593 (771)
|.+.+-..+.|--.......+.|+++.|.|+.. ..|...+..|.. .+ +.+..+..-|......+-++..... ..
T Consensus 10 gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 10 GLPTSILTLKPWVTKSGEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CCcccceeeeeeeccCCCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 333443344443223456789999999988763 245455554432 22 3355555444222211111111111 00
Q ss_pred ccch-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 594 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 594 ~~~~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.... +.+..-++++.+.- ....++.++|||-|+++++.+....-. .+..+++.-|
T Consensus 88 ifsL~~QV~HKlaFik~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred ccchhhHHHHHHHHHHHhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 1112 23334455554432 345789999999999999988763222 2344455445
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00019 Score=74.49 Aligned_cols=92 Identities=15% Similarity=0.260 Sum_probs=56.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||.++.++ .+.|- +..+ +..+-.... +.+.+++||||||+|+...++...
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~e---Llg~mkSYF------GGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQE---LLGVMKSYF------GGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHH---HHHHHHhhc------cceEEEEEcCCccEEEecCCcceE
Confidence 4578899999999999998765 44443 2211 111111111 122599999999999998877643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
. +|......-...-..+++|...+.|++
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 2 333222222233445778887777764
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.12 Score=55.36 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=124.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
......+++|.+++ +.+.. ...+..++ ..........+.... ..+.++||+++++......
T Consensus 76 p~~i~v~~~~~~vy-v~~~~--~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVY-VTTGD--SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEE-EecCC--CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 45678899999874 44432 33455665 222223333333333 4899999999886652210
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....+.++|..++++... .+........+++|||+. ++
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~----vy 175 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK----VY 175 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe----EE
Confidence 247889999988887665 333334478899999996 55
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCCCccccceeecCCCCEEEEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
... . ....|..+|. ++....+ .-..........++|||++++ +
T Consensus 176 v~~-~-------------~~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~y-V 223 (381)
T COG3391 176 VTN-S-------------DDNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVY-V 223 (381)
T ss_pred EEe-c-------------CCCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEE-E
Confidence 443 2 2236888886 4444443 111223356789999999764 4
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
.... +....+.++|..++........ ..+ . .......+|+|+.++..... ...
T Consensus 224 ~~~~-------~~~~~v~~id~~~~~v~~~~~~---------~~~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 224 ANDG-------SGSNNVLKIDTATGNVTATDLP---------VGS-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred Eecc-------CCCceEEEEeCCCceEEEeccc---------ccc-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4432 1134688888776554221000 000 0 12355788999988776544 456
Q ss_pred EEEEECCCCcEEEec
Q 004141 415 IISVNVSSGELLRIT 429 (771)
Q Consensus 415 l~~~d~~tg~~~~l~ 429 (771)
+..+|..+..+....
T Consensus 277 V~vid~~~~~v~~~~ 291 (381)
T COG3391 277 VSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEeCCCCceeeee
Confidence 788888776666543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.019 Score=56.03 Aligned_cols=208 Identities=13% Similarity=0.153 Sum_probs=120.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc--cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
+.++-..|.|.....-|..+.+.+.+.++|......+. .-++ +...+...+|.|.|.+|+...+.. ...+
T Consensus 171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q------d~~~vrsiSfHPsGefllvgTdHp--~~rl 242 (430)
T KOG0640|consen 171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ------DTEPVRSISFHPSGEFLLVGTDHP--TLRL 242 (430)
T ss_pred ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh------ccceeeeEeecCCCceEEEecCCC--ceeE
Confidence 34566788888888888888888899988875442211 1111 224588999999999998754432 2233
Q ss_pred EEEecCCcceEEEec-CCc-ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 127 FELWSQSQLEKEFHV-PQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~~~~~~~~~~~~-~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
|.+. ...-.+.. +.+ ..+.| .++..|+.|+ |+..+.
T Consensus 243 Ydv~---T~QcfvsanPd~qht~ai------~~V~Ys~t~~-lYvTaS-------------------------------- 280 (430)
T KOG0640|consen 243 YDVN---TYQCFVSANPDDQHTGAI------TQVRYSSTGS-LYVTAS-------------------------------- 280 (430)
T ss_pred Eecc---ceeEeeecCcccccccce------eEEEecCCcc-EEEEec--------------------------------
Confidence 3333 11111111 222 22223 5788999887 333221
Q ss_pred cCCcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
++..|-+||--+++... +....+...+.++.|+.+||+ |+-.+ .++-++
T Consensus 281 -----------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG---------------~DS~vk 330 (430)
T KOG0640|consen 281 -----------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSG---------------KDSTVK 330 (430)
T ss_pred -----------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecC---------------Ccceee
Confidence 34678888866655433 322234457889999999998 87665 233455
Q ss_pred EEecccccchhhhhhhhcCCCCCCccee-cCCC-----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 284 AVRVSLYKSEASELELKESSSEDLPVVN-LTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~-----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.+ .++.... -|.. ........|.....++.|.... ...|..||..
T Consensus 331 LWEi-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaR 383 (430)
T KOG0640|consen 331 LWEI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDAR 383 (430)
T ss_pred eeee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeecccc
Confidence 5555 3343322 2211 1123456777777777665544 2457888877
Q ss_pred CCCCCC
Q 004141 358 TNGNFS 363 (771)
Q Consensus 358 ~~~~~~ 363 (771)
++....
T Consensus 384 tadr~~ 389 (430)
T KOG0640|consen 384 TADRVA 389 (430)
T ss_pred chhhhh
Confidence 655433
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.047 Score=55.24 Aligned_cols=216 Identities=10% Similarity=0.054 Sum_probs=117.0
Q ss_pred cCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE
Q 004141 36 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV 115 (771)
Q Consensus 36 ~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~ 115 (771)
.|+.-..+|=...-.-+.+.||+.+.... .+-..++.+...|.-..+. ..+....+.+....|+|-....+
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~easg------Ggaf~ViPl~k~Gr~d~~~--P~v~GHt~~vLDi~w~PfnD~vI- 97 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEASG------GGAFLVIPLVKTGRMDASY--PLVCGHTAPVLDIDWCPFNDCVI- 97 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecCC------CcceeecccccccccCCCC--CCccCccccccccccCccCCcee-
Confidence 33333333333333346778888775432 2233444443332111111 11223446688899999777653
Q ss_pred EecCCCCCCeEEEEecCCcceEEE----ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 116 VRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.+..++...-+|.+.+++-.+.++ .+. +....| +-+.|.|--.-++..+
T Consensus 98 ASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrV------g~V~wHPtA~NVLlsa-------------------- 150 (472)
T KOG0303|consen 98 ASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRV------GLVQWHPTAPNVLLSA-------------------- 150 (472)
T ss_pred ecCCCCceEEEEECCCcccccCcccceEEEe-ecceeE------EEEeecccchhhHhhc--------------------
Confidence 233332334455555554333322 111 111111 5677888655554432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+.+||+.+|+...- +.....+.+..|+-||.. |+.++
T Consensus 151 -----------------------g~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc--------- 192 (472)
T KOG0303|consen 151 -----------------------GSDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC--------- 192 (472)
T ss_pred -----------------------cCCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec---------
Confidence 2458999999999985444 345557889999999998 77765
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCc-cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
++..|.++|. ..++...-- .+.+ ......|-.+|+ |+.+.-.. .+..
T Consensus 193 ------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~seR 241 (472)
T KOG0303|consen 193 ------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------MSER 241 (472)
T ss_pred ------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------cccc
Confidence 3347888886 445433221 2333 255678888888 44433322 2345
Q ss_pred cceeeec
Q 004141 350 SLHRIDW 356 (771)
Q Consensus 350 ~l~~~d~ 356 (771)
++-+||.
T Consensus 242 q~aLwdp 248 (472)
T KOG0303|consen 242 QIALWDP 248 (472)
T ss_pred ceeccCc
Confidence 6667764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.053 Score=52.60 Aligned_cols=241 Identities=13% Similarity=0.172 Sum_probs=136.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEE-EecCCCC-----
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLV-VRNPENE----- 122 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~-~~~~~~~----- 122 (771)
...|...|.|......|. ...++.+..++.+++.. ....|--..+.+...+-||-.++|+- +.++.++
T Consensus 20 qtad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l---~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~ 93 (370)
T KOG1007|consen 20 QTADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSEL---LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT 93 (370)
T ss_pred cccCccceEEEEeccccC---CcceeEEEEecCccchh---hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee
Confidence 345777788877655543 33577776675555422 22233333467888888997766544 3333222
Q ss_pred CCeEEEEe-cCCc-----ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCc--
Q 004141 123 SPIQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK-- 193 (771)
Q Consensus 123 ~~~~~~~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~-- 193 (771)
...+|.+. .-+. ...+..++...+|++ .++.|-|++.+|+...+... ..|.....++ .....
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~i---~l~~l~ess~~vaev~ss 164 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNNI---VLWSLDESSKIVAEVLSS 164 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCce---EEEEcccCcchheeeccc
Confidence 23466666 2222 122223444455555 79999999999998764321 1233222222 11000
Q ss_pred ---cCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004141 194 ---DCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 194 ---~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
..........|+| .-|.++.......|.-||+.+-+... +. -...-.+..+.|.|+-+. ++.+.-
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~g----- 234 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCG----- 234 (370)
T ss_pred ccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcC-----
Confidence 0111112455777 44666666777899999987654322 21 112224667889998766 666542
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+.|.++|.-. ....++.|.++..-+..++|.|--.+|+.....+
T Consensus 235 ---------DdgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 235 ---------DDGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred ---------CCccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 223566666510 2234566777777789999999888888776554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.028 Score=60.83 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=77.7
Q ss_pred cccCCC-cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 148 SVYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 148 ~~~~~~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
++|+.+ .+.+++.||+|+.||....... +....|++|+..
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~ 560 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTA 560 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEecc
Confidence 346655 5568889999998877543321 134789999977
Q ss_pred CCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 227 SGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 227 ~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+-.. ..| ......+.+.+|||||++ |+-++. +|.-.||...-+ ...
T Consensus 561 ~W~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~--------------~~~ 607 (764)
T KOG1063|consen 561 NWLQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED--------------IKD 607 (764)
T ss_pred chhhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc--------------cch
Confidence 6443 345 456678999999999999 998872 233355554210 000
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.-....+..+..-+....|+||+++++..|++.
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 111223445566688999999999987777664
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0024 Score=64.10 Aligned_cols=118 Identities=19% Similarity=0.339 Sum_probs=80.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---C------cEEEEECCCCCCCCChhhhhc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---G------~~Vv~~d~rG~~~~g~~~~~~ 587 (771)
.|+.+|-.-..|+..+..++.-.++++||.|++ ...|...+..|... | |.|++|..+| ||-+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 588898887777654444444458889999887 33555666666433 3 8899999999 554321
Q ss_pred CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEE
Q 004141 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 645 (771)
Q Consensus 588 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v 645 (771)
+.+.|-. ...+...++-|.-+ +.-++..|-|.-+|..++..++..+|+.+.+.-
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlH 258 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLH 258 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhh
Confidence 2222222 34444555544444 345789999999999999999999999876643
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0032 Score=62.04 Aligned_cols=112 Identities=9% Similarity=0.164 Sum_probs=63.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
....++||+||..... .......++.....|| .++.+.++..+.. ..+. ............+...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~f-~~a~~r~aql~~~~~~~~~~i~FsWPS~g~~-~~Y~--~d~~~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSF-EDALRRAAQLAHDLGFPGVVILFSWPSDGSL-LGYF--YDRESARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCCH-HHHHHHHHHHHHHhCCCceEEEEEcCCCCCh-hhhh--hhhhhHHHHHHHHHHHHHHHHhc--
Confidence 4568999999954321 1122233344444444 7888888863321 1110 01111112234555555555555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhC----C-----CceeEEEecCCccc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQA----P-----DKFVAAAARNPLCN 652 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~----p-----~~~~~~v~~~p~~~ 652 (771)
....+|.|++||||+.+.+.++... + ..+..+++.+|-++
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 2468999999999999999876541 1 24566777766554
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.078 Score=50.27 Aligned_cols=62 Identities=8% Similarity=0.028 Sum_probs=37.5
Q ss_pred CCCCCccccCC---CEEEEEeeeCCeeEEEEEECCCCcEE--EecCCCCCceeeEEeecCCEEEEEE
Q 004141 390 SILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 390 ~~~~~~~s~Dg---~~l~~~~~~~~~~~l~~~d~~tg~~~--~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
-++.++|.|.- +.-+.+.++++..-||..+.+.++.+ .|..-........||..|+.|....
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~ 275 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSG 275 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEec
Confidence 35677888753 34456667788888998885444322 2222222344568899988665543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0035 Score=71.49 Aligned_cols=288 Identities=16% Similarity=0.174 Sum_probs=145.1
Q ss_pred cceEEEeCCCCCeEEEEecC---------CCCCCeEEEEe-cCCc--ceEEEecCCcccccccCCCcccceeecCCCCe-
Q 004141 100 GASAVVPSPSGSKLLVVRNP---------ENESPIQFELW-SQSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 166 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~---------~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~- 166 (771)
.....+|||++..+.-+... .+.+-.+|.++ .+.. .+.+ +.+-.+..|..+.|++-|..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~--------~s~~s~~rF~kL~W~~~g~~~ 79 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPV--------GSLQSSNRFNKLAWGSYGSHS 79 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccc--------ccccccccceeeeecccCCCc
Confidence 34568999999522211110 01334566666 2222 1222 22223345679999998888
Q ss_pred ---EEEEecCCCCCCCCccCCCC-CC-----CCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCC
Q 004141 167 ---IAYVAEEPSPSKPTFSLGST-KG-----GSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGI 236 (771)
Q Consensus 167 ---la~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~ 236 (771)
||=..+++... .|+.... +. ......+........|.+..+ ....+..+.+|++||+..-+ +.. +
T Consensus 80 ~GlIaGG~edG~I~--ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~--~ 154 (1049)
T KOG0307|consen 80 HGLIAGGLEDGNIV--LYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPF--T 154 (1049)
T ss_pred cceeeccccCCceE--EecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCC--C
Confidence 55443443221 2221110 00 112223333444466777776 45566778999999997632 222 1
Q ss_pred C----CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec
Q 004141 237 P----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 312 (771)
Q Consensus 237 ~----~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l 312 (771)
+ ....+..++|.-.-.. |.-.+. -.....++|+. .......+
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqh----ILAS~s--------------~sg~~~iWDlr----------------~~~pii~l 200 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSH----ILASGS--------------PSGRAVIWDLR----------------KKKPIIKL 200 (1049)
T ss_pred CCCCCCcccceEeccchhhhH----HhhccC--------------CCCCceecccc----------------CCCccccc
Confidence 2 1123445566554444 333321 11244555551 33445666
Q ss_pred CCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 313 TESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 313 t~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+...+ .+....|.||+.+-+.+..++. ....|-+||+.--.. ..++.. .+..+
T Consensus 201 s~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~ass---------P~k~~~---------~H~~G 255 (1049)
T KOG0307|consen 201 SDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASS---------PLKILE---------GHQRG 255 (1049)
T ss_pred ccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCC---------chhhhc---------ccccc
Confidence 65544 3778999999966555554442 123466666533211 001110 12235
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
+-.+.|++.+.++++++..++ +++.+|.+||++.- +...........|++..-.+ +..++....-.||-
T Consensus 256 ilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~-~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSV-MAAASFDGKISIYS 325 (1049)
T ss_pred eeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcch-hhhheeccceeeee
Confidence 668899998877888776554 56667888888663 33222223334555543322 22333444444443
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.46 Score=52.33 Aligned_cols=262 Identities=11% Similarity=0.102 Sum_probs=134.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe-EE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI-QF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~-~~ 127 (771)
+|+|.+.+||+.+... .....|...++.++.--+..++ +.....+|.+||+.+.|++..+...++ +|
T Consensus 136 ~s~D~~~la~s~D~~G----~e~y~lr~kdL~tg~~~~d~i~--------~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~ 203 (682)
T COG1770 136 ISPDHNLLAYSVDVLG----DEQYTLRFKDLATGEELPDEIT--------NTSGSFAWAADGKTLFYTRLDENHRPDKVW 203 (682)
T ss_pred eCCCCceEEEEEeccc----ccEEEEEEEecccccccchhhc--------ccccceEEecCCCeEEEEEEcCCCCcceEE
Confidence 5789999999987543 4456677777754432222221 125578999999999999887654443 33
Q ss_pred EEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 128 ELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
.-.-++ ...+++....+. ..+-.+.=|-.+++|+......
T Consensus 204 ~h~~gt~~~~d~lvyeE~d~-------~f~~~v~~s~s~~yi~i~~~~~------------------------------- 245 (682)
T COG1770 204 RHRLGTPGSSDELVYEEKDD-------RFFLSVGRSRSEAYIVISLGSH------------------------------- 245 (682)
T ss_pred EEecCCCCCcceEEEEcCCC-------cEEEEeeeccCCceEEEEcCCC-------------------------------
Confidence 222222 223333221111 1223445556666666543221
Q ss_pred CCcCcccCCccCceEEEEEccC--CceeeccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 206 EDWGETYAGKRQPSLFVININS--GEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+++++.+. ++++.+ .+... ...++. -|.. .+..+|..+ .+..
T Consensus 246 ----------~tsE~~ll~a~~p~~~p~vv--~pr~~---g~eY~~eh~~d~----f~i~sN~~g-----------knf~ 295 (682)
T COG1770 246 ----------ITSEVRLLDADDPEAEPKVV--LPREN---GVEYSVEHGGDR----FYILSNADG-----------KNFK 295 (682)
T ss_pred ----------cceeEEEEecCCCCCceEEE--EEcCC---CcEEeeeecCcE----EEEEecCCC-----------cceE
Confidence 235677777654 344555 23221 112222 2444 566665443 1224
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
|+...+.. ....-+.+..+.....--.++-=.++|+..-++. +..+|++++.++++.
T Consensus 296 l~~ap~~~---------------~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~--------glp~v~v~~~~~~~~ 352 (682)
T COG1770 296 LVRAPVSA---------------DKSNWRELIPHREDVRLEGVDLFADHLVLLERQE--------GLPRVVVRDRKTGEE 352 (682)
T ss_pred EEEccCCC---------------ChhcCeeeeccCCCceeeeeeeeccEEEEEeccc--------CCceEEEEecCCCce
Confidence 55544300 1111222333333333334555567788777664 246788999887776
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCC-CCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecCC
Q 004141 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSI-LSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~-~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~~ 431 (771)
..+.-.. .. |...+ .+.-| |...|-+..+. .-..+++.+|+.+++.+.|...
T Consensus 353 ~~i~f~~------------~a----y~~~l~~~~e~--~s~~lR~~ysS~ttP~~~~~~dm~t~er~~Lkqq 406 (682)
T COG1770 353 RGIAFDD------------EA----YSAGLSGNPEF--DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQ 406 (682)
T ss_pred eeEEecc------------hh----hhccccCCCCC--CCccEEEEeecccccceeEEeeccCCcEEEEEec
Confidence 4432211 00 11111 12222 34445554443 3345799999999999888643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.076 Score=64.41 Aligned_cols=91 Identities=9% Similarity=-0.008 Sum_probs=49.3
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc-ccCCCCCcccccCCCCCCcccc
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+++|++..|+..... ..+|+++|..++....+..... ...... ......| ..+..++++|
T Consensus 686 ~gVa~dp~~g~LyVad~~----------~~~I~v~d~~~g~v~~~~G~G~-~~~~~g~~~~~~~~-----~~P~GIavsp 749 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG----------QHQIWEYNISDGVTRVFSGDGY-ERNLNGSSGTSTSF-----AQPSGISLSP 749 (1057)
T ss_pred eEEEEecCCCeEEEEECC----------CCeEEEEECCCCeEEEEecCCc-cccCCCCccccccc-----cCccEEEEeC
Confidence 457899977766554432 3568999876654321111000 000000 0000011 1345678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
||+.||++... ...|..+|++++..+.+
T Consensus 750 dG~~LYVADs~--n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 750 DLKELYIADSE--SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred CCCEEEEEECC--CCeEEEEECCCCcEEEE
Confidence 99988776543 34688889888776543
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0049 Score=70.32 Aligned_cols=253 Identities=12% Similarity=0.157 Sum_probs=136.0
Q ss_pred cceEEEeCCCCCeE--EEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCC
Q 004141 100 GASAVVPSPSGSKL--LVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEP 174 (771)
Q Consensus 100 ~~~~~~~SPdG~~l--a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~ 174 (771)
.-...+|++.|..- +.+...++|.-.+|.... .+....++..-...+|.| .++.|+|... .||-.++++
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCCCC
Confidence 45668999999882 112222223333333331 122222222223445555 7899999877 666665554
Q ss_pred CCCCCCccCCCCCCCCCCcc--CCCCCCcccccCCcCccc-CCccCceEEEEEccCCce-eeccCCCCCCccceEEEecC
Q 004141 175 SPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspD 250 (771)
..- .|+....+....... ...-+.-+.|...--..+ .+.......+||+...+. ..+..+........++|.||
T Consensus 140 eI~--iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 140 EIL--IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred cEE--EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 332 343222111111100 001111222322211112 233445788999987643 33322223334668899999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCE
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+.. -+.++.+++ +..-|-.+|+-. .+...+.++.+...+.+..|++.+..
T Consensus 218 ~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 218 HAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred Cce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCCch
Confidence 976 444443222 222344555411 45566777888888999999999977
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
++..+..+ .+++.|+.++++.. .-+....+ ....+.|.|-.-.++..++.+
T Consensus 268 lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~n---------W~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 268 LLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGN---------WCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred hhhcccCC----------CCeeEecCCCceEe----------eecCCCCc---------ceeeeeecCCCcchhhhheec
Confidence 87777654 57999998887641 11111111 133567888776677777778
Q ss_pred CeeEEEEEE
Q 004141 411 SSQVIISVN 419 (771)
Q Consensus 411 ~~~~l~~~d 419 (771)
+...||.+-
T Consensus 319 gkI~I~sl~ 327 (1049)
T KOG0307|consen 319 GKISIYSLQ 327 (1049)
T ss_pred cceeeeeee
Confidence 888888764
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0013 Score=68.28 Aligned_cols=126 Identities=23% Similarity=0.211 Sum_probs=79.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHH-HCCcEEEEECCCCCCCCChhh---hhcCCCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS-SVGYSLLIVNYRGSLGFGEEA---LQSLPGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la-~~G~~Vv~~d~rG~~~~g~~~---~~~~~~~~~~~ 595 (771)
|..-++.|. . ...+.-++|+++||++-.+.....- ....|+ ....+|+.++||-. .+|-=+ ....+++.|
T Consensus 121 LYlNVW~P~-~-~p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPGNmG-- 195 (601)
T KOG4389|consen 121 LYLNVWAPA-A-DPYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPGNMG-- 195 (601)
T ss_pred eEEEEeccC-C-CCCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCCccc--
Confidence 333456673 1 2223349999999887665554332 233444 45578899999932 233211 123345554
Q ss_pred chhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 004141 596 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~ 652 (771)
.-|..-|++|+.++ ..-|+++|.|+|.|+|+.-+.+.+..- ..+|+.+|+.++..+
T Consensus 196 -l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 196 -LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred -hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 67888899999876 336999999999999998766544321 236788888777554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.11 Score=52.15 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=62.5
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+++++|+.+-+..... ..++..+..++|||||.. |+..+..+ .-|.++.++
T Consensus 152 ~GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~l----lATASeKG--------------TVIRVf~v~-------- 204 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTL----LATASEKG--------------TVIRVFSVP-------- 204 (391)
T ss_pred CceEEEEEcccceeeeEE-EecCCceeEEEECCCCCE----EEEeccCc--------------eEEEEEEcC--------
Confidence 368999998765544431 244556788899999998 88877322 234444542
Q ss_pred hhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 297 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
++.....+..+ ...+.+.+||||++.|.-.++.+ .-+|+.++...
T Consensus 205 --------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---------TVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 --------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---------TVHIFKLEKVS 251 (391)
T ss_pred --------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---------eEEEEEecccc
Confidence 33333333322 33578999999999988877664 35566665433
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.01 Score=65.44 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=60.2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
...|.++|. .+... +.+-.+...+....||||||+|+..+.+. .|.+||+.
T Consensus 555 df~I~vvD~-----------------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlp 606 (910)
T KOG1539|consen 555 DFSIRVVDV-----------------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLP 606 (910)
T ss_pred ceeEEEEEc-----------------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEecc
Confidence 347889997 55554 44455667789999999999999999874 49999999
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
++... +-+... .-..++.+||+|..|+-+.... ..||.+
T Consensus 607 t~~lI----------D~~~vd----------~~~~sls~SPngD~LAT~Hvd~--~gIylW 645 (910)
T KOG1539|consen 607 TGTLI----------DGLLVD----------SPCTSLSFSPNGDFLATVHVDQ--NGIYLW 645 (910)
T ss_pred Cccee----------eeEecC----------CcceeeEECCCCCEEEEEEecC--ceEEEE
Confidence 87752 111100 0124678999999775544332 344444
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.11 Score=49.11 Aligned_cols=198 Identities=15% Similarity=0.107 Sum_probs=115.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+.+..|.-||++.+.- ++.....+| ..|...+....... ......-|-|..+++--..++..
T Consensus 18 gaV~avryN~dGnY~ltc-----GsdrtvrLWNp~rg~liktYsghG~---------EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTC-----GSDRTVRLWNPLRGALIKTYSGHGH---------EVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cceEEEEEccCCCEEEEc-----CCCceEEeecccccceeeeecCCCc---------eeeeccccccccccccCCCCceE
Confidence 568899999999998765 334477888 34444433322111 11355666677666554333211
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~ 255 (771)
.+|+...++-.+++..+....+.+.|.++-.-.+.+.-...+.+||-.+..+.++.-+.. ...+.++..+ +..
T Consensus 84 --~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 84 --QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred --EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 245555555556666666666777788877666677778899999987765444420111 1234444333 232
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--CccccceeecCCCCEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f 333 (771)
|+-.+ -+..+..+|+ .-|. ++.+ ...+.+..||+||+-+.-
T Consensus 158 --IvaGS---------------~DGtvRtydi-----------------R~G~---l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDI-----------------RKGT---LSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEe-----------------ecce---eehhhcCCcceeEEecCCCCEEEE
Confidence 55443 2235566665 2222 2222 224788999999997765
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
.+.+ ..|.++|-.+|+..+.
T Consensus 201 ~~l~-----------stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 201 SSLD-----------STLRLLDKETGKLLKS 220 (307)
T ss_pred eecc-----------ceeeecccchhHHHHH
Confidence 5554 3588899888876443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.27 Score=58.57 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=62.1
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....+|=.||+++|..+-... .| ....|.+|+=+ |......+ ..+| -...++|-
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~--~~---~~R~iRVy~Re-G~L~stSE---------------~v~g----Le~~l~Wr 265 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPE--TG---SRRVIRVYSRE-GELQSTSE---------------PVDG----LEGALSWR 265 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcC--CC---ceeEEEEECCC-ceEEeccc---------------cCCC----ccCCccCC
Confidence 3456789999999988876431 01 14566777633 33221111 1111 13578999
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----CCCCCceeeEEeecCCEEEEEEe
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.|..|+-+....+...+..+..++-+--..+ .....+....|+.|+..|++...
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 99996655554445555666665442222222 22234556788888888777664
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.05 Score=54.70 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred CcccCCccCceEEEEEccCCceeec--cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 209 GETYAGKRQPSLFVININSGEVQAV--KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l--~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
|.++++.....|++|...+|....- +-+....++..+.|||..+. ++++.. -+..|.++|
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS--------------~DgsIrIWD 286 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCS--------------CDGSIRIWD 286 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeee--------------cCceEEEEE
Confidence 3444555667889998888764332 11335568889999999987 777652 122566666
Q ss_pred cccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 287 VSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+ ..+ .+.....+...+.-..|+-+-..||+...+ ..|.+||+..=+..+
T Consensus 287 i-----------------Rs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 287 I-----------------RSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQFKSGQ 338 (440)
T ss_pred e-----------------cCCCccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhhccCCC
Confidence 6 222 122223445567778999887766655443 246777775432211
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
. +.. |. .+..-+.++.|+|....++..+..+....||-+.+
T Consensus 339 p------VA~---------fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 P------VAT---------FK-YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred c------cee---------EE-eccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 0 110 10 01123568899998888888777777777775544
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.041 Score=54.16 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=22.2
Q ss_pred EEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 223 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
+.-.++.+-.+. .....++.++.|.+||.+ |+..+
T Consensus 235 y~~~~~~pl~ll-ggh~gGvThL~~~edGn~----lfsGa 269 (406)
T KOG2919|consen 235 YNDDGRRPLQLL-GGHGGGVTHLQWCEDGNK----LFSGA 269 (406)
T ss_pred EecCCCCceeee-cccCCCeeeEEeccCcCe----ecccc
Confidence 333344444442 244557889999999997 65544
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.047 Score=56.75 Aligned_cols=186 Identities=12% Similarity=0.119 Sum_probs=114.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+....|+|++.+++....++ + +..+|+ .+... .+++. +..+. ..+.+|+|-..+|++...
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd-~---v~k~~d~s~a~v-~~~l~-~htDY------VR~g~~~~~~~hivvtGs----- 173 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDD-K---VVKYWDLSTAYV-QAELS-GHTDY------VRCGDISPANDHIVVTGS----- 173 (487)
T ss_pred CceeEEEecccCCeEEEecCCC-c---eEEEEEcCCcEE-EEEec-CCcce------eEeeccccCCCeEEEecC-----
Confidence 3467788999999886543332 3 445552 22222 33332 11122 279999999888888621
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+..|.+||........++ ......+..+.+-|.|..
T Consensus 174 --------------------------------------YDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~---- 210 (487)
T KOG0310|consen 174 --------------------------------------YDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL---- 210 (487)
T ss_pred --------------------------------------CCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----
Confidence 3467888888766433332 456667888999999887
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ...+-+||+- .+++. .....+...+.+.++..|++.|+-.+-
T Consensus 211 iasAg----------------Gn~vkVWDl~----------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 211 IASAG----------------GNSVKVWDLT----------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEcC----------------CCeEEEEEec----------------CCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 66554 2267888871 34443 333347778999999999999987776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
+. ++-++|..+-+ ++.-+ .|| ..+-+.+.|||+..+++--
T Consensus 259 D~-----------~VKVfd~t~~K----------vv~s~------~~~----~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 259 DR-----------HVKVFDTTNYK----------VVHSW------KYP----GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cc-----------ceEEEEccceE----------EEEee------ecc----cceeeEEecCCCceEEEec
Confidence 64 35556533211 11111 222 2455777889888877643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.089 Score=49.90 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=82.3
Q ss_pred ceEEEEEccCCc-eeeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
-.|+.++-+++- ..++. .....++.++.|+|- |. ++-..--...+|+--.-|.| .-.||..+-
T Consensus 128 vsvl~~~~~g~w~t~ki~-~aH~~GvnsVswapa~~~g~-----~~~~~~~~~~krlvSgGcDn-~VkiW~~~~------ 194 (299)
T KOG1332|consen 128 VSVLTYDSSGGWTTSKIV-FAHEIGVNSVSWAPASAPGS-----LVDQGPAAKVKRLVSGGCDN-LVKIWKFDS------ 194 (299)
T ss_pred EEEEEEcCCCCccchhhh-hccccccceeeecCcCCCcc-----ccccCcccccceeeccCCcc-ceeeeecCC------
Confidence 455555555332 22231 456678899999996 52 21111111122322222433 224555542
Q ss_pred hhhhhhhcCCCCC-CcceecCCCCccccceeecCCC----CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 294 ASELELKESSSED-LPVVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.. .....|..+..-++.++|.|.- .+||-.+++. ..-||..+.+.+.-+..
T Consensus 195 -----------~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg---------~viIwt~~~e~e~wk~t---- 250 (299)
T KOG1332|consen 195 -----------DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG---------TVIIWTKDEEYEPWKKT---- 250 (299)
T ss_pred -----------cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC---------cEEEEEecCccCccccc----
Confidence 11 1234477777778888998864 4566666553 22344444222221100
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+ -..|| .-+.+++||.-|..| ..+..++...||.=++ .|+.+++..
T Consensus 251 --l--------l~~f~----~~~w~vSWS~sGn~L-aVs~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 251 --L--------LEEFP----DVVWRVSWSLSGNIL-AVSGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred --c--------cccCC----cceEEEEEeccccEE-EEecCCcEEEEEEeCC-CCcEEEccc
Confidence 0 01233 124577899999855 4445566778888776 467766643
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.14 Score=56.43 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.0
Q ss_pred ceEEEEEccC-----CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 218 PSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 218 ~~l~v~d~~~-----~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
..+-++|..+ .++... ++-..++..+..||||++ ++...
T Consensus 296 n~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky----lyVan 339 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY----FIANG 339 (635)
T ss_pred CEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE----EEEeC
Confidence 4677888877 345554 455567788999999997 66654
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.1 Score=48.63 Aligned_cols=144 Identities=13% Similarity=0.142 Sum_probs=83.4
Q ss_pred CCccCceEEEEEccCCceeec-cCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 213 AGKRQPSLFVININSGEVQAV-KGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l-~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
.+.....|..||+.-...... ...-. ...+..++.-|.|+. |+ ++- .++.-.++|
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lyd 259 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYD 259 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEE
Confidence 344567888899865544333 11111 124567788898884 44 331 223445566
Q ss_pred cccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 287 VSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
+ .++. .++...+...++.++|||-.-++...+.+ ..|.+-|+++.-..++.
T Consensus 260 i-----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el~ 311 (350)
T KOG0641|consen 260 I-----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHELP 311 (350)
T ss_pred e-----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcCc
Confidence 6 5554 45666777789999999998888877765 35788888775544432
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.-. +...++. .-...|.|..- -+++++.+....||.++
T Consensus 312 ~~v------v~ehkdk---------~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 312 IMV------VAEHKDK---------AIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred eEE------EEeccCc---------eEEEEecCccc-eeeeccCcceEEEeccC
Confidence 111 1111111 12446777653 33455555666788664
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0096 Score=65.07 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc---------ch--------HHHHHHHHCCcEEEEECCCCCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---------YS--------KSLAFLSSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~---------~~--------~~~~~la~~G~~Vv~~d~rG~~~ 579 (771)
.+..+..|++...+ ..+..|+||++.|||+.+.... .. ....-+ .+-..++.+|.+-..|
T Consensus 22 ~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW-~~~an~l~iD~PvGtG 98 (415)
T PF00450_consen 22 ENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSW-NKFANLLFIDQPVGTG 98 (415)
T ss_dssp TTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-G-GGTSEEEEE--STTST
T ss_pred CCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccc-ccccceEEEeecCceE
Confidence 45678888887664 4567899999999998753110 00 000011 1237888999775555
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEEecC
Q 004141 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 648 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v~~~ 648 (771)
|...........-.....+|+..+++.... .+.....++.|+|.|+||..+-.+|.. . +-.++++++.+
T Consensus 99 fS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGn 178 (415)
T PF00450_consen 99 FSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGN 178 (415)
T ss_dssp T-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEES
T ss_pred EeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecC
Confidence 654322211111112335677777765444 344566799999999999987766642 2 23479999999
Q ss_pred Cccch
Q 004141 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|+++.
T Consensus 179 g~~dp 183 (415)
T PF00450_consen 179 GWIDP 183 (415)
T ss_dssp E-SBH
T ss_pred ccccc
Confidence 98875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.086 Score=56.85 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=52.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|||+++..... ..+.++|.+ +|+....|. .....+..++||.||++.|-- +.....++
T Consensus 21 kPDGsqL~lAAg----------~rlliyD~n-dG~llqtLK-----gHKDtVycVAys~dGkrFASG-----~aDK~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAAG----------SRLLVYDTS-DGTLLQPLK-----GHKDTVYCVAYAKDGKRFASG-----SADKSVII 79 (1081)
T ss_pred CCCCceEEEecC----------CEEEEEeCC-Ccccccccc-----cccceEEEEEEccCCceeccC-----CCceeEEE
Confidence 468888887642 356777764 333332222 222457889999999988753 33347778
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
|.....-.+-....+. +.+.+|.|-...|+.-
T Consensus 80 W~~klEG~LkYSH~D~---------IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 80 WTSKLEGILKYSHNDA---------IQCMSFNPITHQLASC 111 (1081)
T ss_pred ecccccceeeeccCCe---------eeEeecCchHHHhhhc
Confidence 8422111111111111 2688999998888764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.031 Score=56.66 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=46.8
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
.+-..+|+||+.. +++.+ -...++.+|+ ..|. ...+.++...+
T Consensus 125 diydL~Ws~d~~~----l~s~s---------------~dns~~l~Dv-----------------~~G~l~~~~~dh~~yv 168 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGS---------------VDNSVRLWDV-----------------HAGQLLAILDDHEHYV 168 (434)
T ss_pred chhhhhccCCCce----eeeee---------------ccceEEEEEe-----------------ccceeEeecccccccc
Confidence 4567899999998 88876 2236777887 4454 45566677788
Q ss_pred cceeecCCCCEEEEEecCC
Q 004141 320 FFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~ 338 (771)
...+|.|-+++++-.+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999998777664
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.085 Score=58.95 Aligned_cols=257 Identities=13% Similarity=0.121 Sum_probs=136.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.++-..+|.|.--+|+..--.+ ++.+|+ .+.....++ .| ||...++.|.|++-.++...++...
T Consensus 10 sRvKglsFHP~rPwILtslHsG-----~IQlWDYRM~tli~rFd----eH-----dGpVRgv~FH~~qplFVSGGDDykI 75 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSG-----VIQLWDYRMGTLIDRFD----EH-----DGPVRGVDFHPTQPLFVSGGDDYKI 75 (1202)
T ss_pred ccccceecCCCCCEEEEeecCc-----eeeeehhhhhhHHhhhh----cc-----CCccceeeecCCCCeEEecCCccEE
Confidence 4566789999988887543322 566663 233222111 12 2334899999999755444444333
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|+............+..|.....|-...--.++...+..|.+|+..+++...+. +.....+.-+.|.|....
T Consensus 76 --kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 76 --KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred --EEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 34544333333334445555544334333333455557789999999998876653 555667888899998775
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC--------C----cc-eecCCCCcccccee
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED--------L----PV-VNLTESISSAFFPR 323 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--------~----~~-~~lt~~~~~~~~p~ 323 (771)
||-.+ -+..|.++|+++..++...+-.-++...+ | -. ..|..+...+...+
T Consensus 150 -IVSaS---------------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSAS---------------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEec---------------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 66554 33467788875442222111100000000 0 01 12333455567777
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
|.|.=--|+-.+.+. ...||+|+-...- + + +.-.|.| .++.++-|.|.-. |
T Consensus 214 fhpTlpliVSG~DDR---------qVKlWrmnetKaW---------E-v--------DtcrgH~-nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADDR---------QVKLWRMNETKAW---------E-V--------DTCRGHY-NNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCcc---------eeeEEEeccccce---------e-e--------hhhhccc-CCcceEEecCccc-e
Confidence 887655444333332 3457776532111 0 0 1111222 2456677887655 6
Q ss_pred EEEeeeCCeeEEEEEEC
Q 004141 404 LLSSIWGSSQVIISVNV 420 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~ 420 (771)
+++.+.+...++|-++-
T Consensus 265 IlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred eEecCCCccEEEEeccc
Confidence 66776676667774443
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.16 Score=50.24 Aligned_cols=200 Identities=14% Similarity=0.204 Sum_probs=96.6
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+++.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 7999999999998886543 67899998765555553
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-- 313 (771)
..+......+++.-+|+ ++.+. .|...|+.++++... ..+ .....+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~---~~~-------~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDT---TSL-------DRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE-------TT---------EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEeccc---ccc-------chhhceEEecc
Confidence 33334566778876664 44443 244478888773200 000 001112221
Q ss_pred ---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 314 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 314 ---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
.++......+|+|.++.|+.+..+. ...||.++...+.. .+. +.......... .....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~-~~~-----~~~~~~~~~~~----~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGF-DLF-----VSDDQDLDDDK----LFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS---E-----EEE-HHHH-HT------SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCcc-cee-----ecccccccccc----ceecc
Confidence 1233478899999999988776543 24577666422111 000 00000000000 11123
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCCC---------CceeeEEeecCCEEEEEE
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAES---------NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~~---------~~~~~~~s~dg~~l~~~~ 451 (771)
+..+.+.|....|++.+.. ...|..+|. +|++. .+.-..+ ......++++| .||.+.
T Consensus 173 ~S~l~~~p~t~~lliLS~e--s~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvs 239 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDE--SRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVS 239 (248)
T ss_dssp --EEEEETTTTEEEEEETT--TTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEE
T ss_pred ccceEEcCCCCeEEEEECC--CCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEc
Confidence 4566777777777777543 345777885 45543 3322221 23446777776 465555
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.031 Score=53.20 Aligned_cols=174 Identities=13% Similarity=0.195 Sum_probs=107.2
Q ss_pred cCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
+...|++++++ .+.++.+.-.....+...++||+.-.. +++++- .++.|.++|+.-
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 56899999996 333433311223446778999999888 888762 333566666521
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+.+..+.++...+.+..|++--++++.++.-+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3445566667788899999999887776666332 2355555433332111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
|.| ...-+....|||-..-++.+.+.++..+||-++.. |+...|.......-...|+.-...++++..
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecC
Confidence 222 11124567899877778888888888899988875 555556555433333455665555665543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=50.48 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=85.7
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecC-C----
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E---- 314 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt-~---- 314 (771)
.+.-+.|.|++++ |+-+.. .+|..++++ ++.+ ...+. .
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567789999999 887751 256677763 2222 11111 1
Q ss_pred CCccccceeecC--CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 315 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 315 ~~~~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
......+-+||| ||..++.++.. .|+.||+.+.....-... .+...+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~d------------------AHgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIED------------------AHGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhh------------------hhcceee
Confidence 122356789998 89988876643 488899876443111110 1112345
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+.|.|+-..++++...++..+||-....+-.++.+....-.+-...|.+..++|+.+.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 77899999999988888888888855443333444444332222334555555555443
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.026 Score=52.10 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.9
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCC--------------CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 524 IFVSSSHKKDCSCDPLIVVLHGGPHSVSL--------------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 524 ~~~~P~~~~~~~~~p~vv~~HGg~~~~~~--------------~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
+++..++. -..+..++|++||.+..... ....+.+....+.||-|++.|.--...+-....+ +
T Consensus 89 FiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p 165 (297)
T KOG3967|consen 89 FIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--P 165 (297)
T ss_pred eEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccC--c
Confidence 34444332 23345689999996532211 1122456666789999999986532222222111 1
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
..+-...++.+.....+++.. ..++.|+++.||+||..++.++.+.|+
T Consensus 166 ~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 166 QKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred chhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 112223455555555555543 467889999999999999999999875
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.14 Score=51.23 Aligned_cols=229 Identities=10% Similarity=0.098 Sum_probs=133.3
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+.++..++.+-.||+.++.- .+| ++.....+..+++|+---++.-..+. + ...-|+-.. .+++....+
T Consensus 166 f~tgs~DrtikIwDlatg~L---klt---ltGhi~~vr~vavS~rHpYlFs~ged--k---~VKCwDLe~-nkvIR~YhG 233 (460)
T KOG0285|consen 166 FATGSADRTIKIWDLATGQL---KLT---LTGHIETVRGVAVSKRHPYLFSAGED--K---QVKCWDLEY-NKVIRHYHG 233 (460)
T ss_pred EEecCCCceeEEEEcccCeE---EEe---ecchhheeeeeeecccCceEEEecCC--C---eeEEEechh-hhhHHHhcc
Confidence 44555667777778854421 222 22234567788999877777433222 2 334442111 112221111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
....| .++...|--..|+..+.+...+ .|+............+......+.+.+--++.+++..+..|.+||
T Consensus 234 HlS~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 234 HLSGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred cccee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 11111 4778888877777766655443 455433333334444444455555665556777788889999999
Q ss_pred ccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004141 225 INSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 225 ~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
+..|+. ..+ +.....+...+..|+-.. ++-.+ ...|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~----fASas----------------~dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL----FASAS----------------PDNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh----hhccC----------------CccceeccCC---------------
Confidence 987764 444 677778888888987654 33222 1146666663
Q ss_pred CCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 304 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 304 ~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
++.-+..|+.+...+.......||= ++...+ ...|+.|||.+|-..|
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~d----------ng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGGD----------NGSIMFWDWKSGHNYQ 395 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcCC----------ceEEEEEecCcCcccc
Confidence 4445666777777777777777773 333333 2469999999876644
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=59.45 Aligned_cols=57 Identities=14% Similarity=0.143 Sum_probs=37.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+...+|-|||++|+...... +++.+ .+|.. ..+-..... ..+++||.||+++|..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLKgHKDt----------VycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLKGHKDT----------VYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecCCE-----EEEEeCCCcccccccccccce----------EEEEEEccCCceeccCC
Confidence 367899999999998775443 66666 33332 222211112 26999999999888754
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.13 Score=50.20 Aligned_cols=183 Identities=14% Similarity=0.111 Sum_probs=99.9
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEecC---CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVP---QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.=+|||||++|+-..+..+.+..++-+++ .....++-..+ -+.| .+.|.+||+.|+.+. ..-...
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH----------ev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH----------EVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc----------eeEEecCCcEEEEeC-Cceecc
Confidence 45799999988554444444555666663 22333333322 2333 789999999887753 211111
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccCCC---CCCccceEEEecCCCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIP---KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~~~---~~~~~~~~~wspDg~~~ 254 (771)
|.+.. -+.......+.|.++|..+|++. +.+ .| ...++..+..-+||+
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgt-- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGT-- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCc--
Confidence 11100 12222335689999997777643 222 33 234788889999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------CccccceeecCC
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFFPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------~~~~~~p~~SpD 327 (771)
|+|...-.+++. ...-|.-.-. .+...+.|.-. ...+.+.+..-+
T Consensus 239 ---vwfgcQy~G~~~--------d~ppLvg~~~-----------------~g~~l~~~~~pee~~~~~anYigsiA~n~~ 290 (366)
T COG3490 239 ---VWFGCQYRGPRN--------DLPPLVGHFR-----------------KGEPLEFLDLPEEQTAAFANYIGSIAANRR 290 (366)
T ss_pred ---EEEEEEeeCCCc--------cCCcceeecc-----------------CCCcCcccCCCHHHHHHHHhhhhheeeccc
Confidence 787664333211 1112222221 22222222111 224667777766
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
-..++.++.+ .+...+||.++|...
T Consensus 291 ~glV~lTSP~----------GN~~vi~da~tG~vv 315 (366)
T COG3490 291 DGLVALTSPR----------GNRAVIWDAATGAVV 315 (366)
T ss_pred CCeEEEecCC----------CCeEEEEEcCCCcEE
Confidence 6666666654 256889999998763
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.15 Score=52.71 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=88.6
Q ss_pred cccCCccCceEEEEEccCCce--eecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 210 ETYAGKRQPSLFVININSGEV--QAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~--~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
.++.+.....|++||+..... ..+. -......+..++|+|-.+. |+-.. ..++.|.
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv--------------~dd~~L~ 253 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSV--------------GDDGKLM 253 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheee--------------cCCCeEE
Confidence 344444568899999865432 1110 0223446778899997775 43322 1345788
Q ss_pred EEecccccchhhhhhhhcCCCCC--Ccc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 284 AVRVSLYKSEASELELKESSSED--LPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~--~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
++|+ -+ .+. ...-.+.+.+.+.+|+|-+..|+-+... ...|.+||+..=.
T Consensus 254 iwD~-----------------R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 254 IWDT-----------------RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLN 306 (422)
T ss_pred EEEc-----------------CCCCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcc
Confidence 8887 32 222 2223345668899999977766544432 2458888876532
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
....+ |.+ +...+..+.|||+...++.++..+++..+|-+..-
T Consensus 307 ~~lh~-----------------~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 307 KPLHT-----------------FEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred cCcee-----------------ccC-CCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 21111 111 11235578899999999999988888778866543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.055 Score=50.92 Aligned_cols=236 Identities=14% Similarity=0.102 Sum_probs=120.5
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
....|.-||++.+--..+++.+ .|........+....+..-.-+...+-|-.......+...+++||+++|++.+--
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~- 97 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF- 97 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-
Confidence 5778888888776655555433 4443322222221111111111122223233344556789999999999875441
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE- 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~- 314 (771)
-.....+..+.|.-+.. +++.+. -++.+..+|-- +.+-++.++..
T Consensus 98 rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCR---------------S~s~ePiQilde 143 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCR---------------SRSFEPIQILDE 143 (307)
T ss_pred ccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEcc---------------cCCCCccchhhh
Confidence 23344677888887665 666652 22245555531 03344444433
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
....+.+...+ +..|+-.+.+ ..+..+|+..|.... +. ....+...
T Consensus 144 a~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s-----------------Dy----~g~pit~v 189 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS-----------------DY----FGHPITSV 189 (307)
T ss_pred hcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh-----------------hh----cCCcceeE
Confidence 33345555554 3445444433 246677776655311 00 11235678
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC--ceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN--FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~--~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+||+||.-++.++- + ..|-.+|..||++-..-.+... +-....-.+....++..+ .-..+|+.++..+
T Consensus 190 s~s~d~nc~La~~l-~--stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS---EDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 190 SFSKDGNCSLASSL-D--STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS---EDGKVYFWDLVDE 259 (307)
T ss_pred EecCCCCEEEEeec-c--ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEecc---CCceEEEEEeccc
Confidence 99999997766543 2 3466678888886544332221 111111113344444443 2344677776544
|
|
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0097 Score=60.21 Aligned_cols=113 Identities=11% Similarity=0.113 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--cEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
..+-++||+||..... ...-...++-....| .+.+.+..+..+ .-.......+-..+...++...+++|.+...
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g---~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~ 189 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRG---SLLGYNYDRESTNYSRPALERLLRYLATDKP 189 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCC---eeeecccchhhhhhhHHHHHHHHHHHHhCCC
Confidence 4567999999954432 222223444444444 344555555311 1100011112223346778888888887743
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCccch
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNL 653 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~~~ 653 (771)
..+|.|+.||||.++++..+.+- +..|+-+|+.+|=.|.
T Consensus 190 --~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 190 --VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred --CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 57899999999999999776541 3357888888886654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.029 Score=57.85 Aligned_cols=215 Identities=13% Similarity=0.109 Sum_probs=114.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+...+-+|+|.+|+- .... ++-.+|.+. .|....+... ...+ .++.||-||++|+..+.+....
T Consensus 82 g~v~al~s~n~G~~l~a-g~i~-g~lYlWels-sG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~V~ 148 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLA-GTIS-GNLYLWELS-SGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGAVL 148 (476)
T ss_pred cceeeeecCCCceEEEe-eccc-CcEEEEEec-cccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCccEE
Confidence 55778888999998853 3222 333444443 3443322221 2233 5889999999888777665432
Q ss_pred CCCccCC----CCCC-----CCCCccCCCCCCcc--cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004141 178 KPTFSLG----STKG-----GSSDKDCNSWKGQG--DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 178 ~~~~~~~----~~~~-----~~~~~~~~~~~~~~--~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
.|... .... ...+.++.-...++ .+.+--...++...+..+.+||+..|.+..- ..-+..+..++
T Consensus 149 --vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 149 --VWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred --EEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 22210 0011 11122221111111 1111113444555678899999999975433 34455677888
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC-CCCCCcceecCCCCc--ccccee
Q 004141 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~lt~~~~--~~~~p~ 323 (771)
..|-++ .+|++.+. +.||..++-.-+.++...+ .+. ...+.+...+..+.+ .+...+
T Consensus 225 lDpae~-----~~yiGt~~--------------G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTEE--------------GKIFQNLLFKLSGQSAGVN-QKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCCc--------------ceEEeeehhcCCccccccc-ccccccccceeeeeccccCCcceeEEE
Confidence 999776 66766433 3566666522111111111 011 112223444555555 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.|-||+.|+-.+.+ .++.+||..+.+.
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQC 311 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHHH
Confidence 99999987754443 3588888776554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.034 Score=61.03 Aligned_cols=129 Identities=14% Similarity=0.213 Sum_probs=76.4
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+..+.+++.+..||+..... ++.+.+ ....+..++|||.-... |++..++| ++.+|+-.++.+-...-..
T Consensus 149 liSGSQDg~vK~~DlR~~~S--~~t~~~----nSESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKS--KSTFRS----NSESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred EEecCCCceEEEEeeecccc--cccccc----cchhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhc
Confidence 44566778888888865533 222222 23458889999955443 44443334 5555543333222111111
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
..|.| .++.|+|++.+||..+ ++..+.+||
T Consensus 219 H~GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd 248 (839)
T KOG0269|consen 219 HNGPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWD 248 (839)
T ss_pred ccCce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEe
Confidence 22222 6899999999998853 235788899
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+++...+.-+..-..++.+.|-|+-..
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccc
Confidence 88776544421333456788999999876
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.019 Score=72.79 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.++++||.++. ...|......| ..++.|+.++.+|. +... .....++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~---~~~~-------~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRP---DGPM-------QTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCC---CCCC-------CCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668999997665 33566666666 45699999999984 2210 11123444444333333221 1134
Q ss_pred eEEEEEcChhHHHHHHHHhh---CCCceeEEEecCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~p 649 (771)
++.++|||+||.++..++.+ .++.+..+++..+
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 79999999999999999885 4677777776654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.39 Score=48.23 Aligned_cols=200 Identities=14% Similarity=0.124 Sum_probs=115.3
Q ss_pred ccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 97 EMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 97 ~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+.+..+++-|-.++++..+.+ ....|| ..|++...+. .-..+ .++.+|+---+|+...++
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~v----------r~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETV----------RGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhhee----------eeeeecccCceEEEecCC
Confidence 34567778888887777654433 255566 3444332222 11122 588899888888777766
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+..+ -|+..+.+-.+....+.+-..-...-|-....+++..+..+.+||+.+....... ......+.++..-|-.-+
T Consensus 215 k~VK--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq 291 (460)
T KOG0285|consen 215 KQVK--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ 291 (460)
T ss_pred CeeE--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc
Confidence 6443 1222111111111111111111112222334556667889999999887544441 334556778888876665
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+..+ -++.|..+|+- .+.....||.+..+++.....|+-..+|-
T Consensus 292 ----vit~S---------------~D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~fAS 336 (460)
T KOG0285|consen 292 ----VITGS---------------HDSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENLFAS 336 (460)
T ss_pred ----eEEec---------------CCceEEEeeec----------------cCceeEeeecccceeeEEecCCchhhhhc
Confidence 77665 33468888872 55667889999999999999998765443
Q ss_pred EecCCCCCCCCccccccceeeecCCCCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.+.+ .|..+++.-|..
T Consensus 337 as~d------------nik~w~~p~g~f 352 (460)
T KOG0285|consen 337 ASPD------------NIKQWKLPEGEF 352 (460)
T ss_pred cCCc------------cceeccCCccch
Confidence 3322 355666655543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.19 Score=52.08 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=38.0
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEE
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+++-.|... |+.+.++.+..+||.+.-.-..+..|..- .+.+....|+.+|+.|++..
T Consensus 384 tsla~i~~sd-L~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 384 TSLAVIPGSD-LLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeEecccCc-eEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEec
Confidence 3444455554 77888899999999987543344444322 23445567888999776653
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.18 Score=49.85 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=86.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.||.++|+.+.+. ...++.+...|+..+.+.+.. .+ .+.++++.-+|+ ++.+.++
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~---~~~i~els~~G~vlr~i~l~g--~~------D~EgI~y~g~~~-~vl~~Er----- 84 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDE---PGEIYELSLDGKVLRRIPLDG--FG------DYEGITYLGNGR-YVLSEER----- 84 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETT---TTEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEETT-----
T ss_pred CCccccEEcCCCCeEEEEECC---CCEEEEEcCCCCEEEEEeCCC--CC------CceeEEEECCCE-EEEEEcC-----
Confidence 347889999999998877664 467888886666666666532 11 226888887775 3333332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC--Cc-----eeecc-CCC--CCCccceEEEe
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 248 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--~~-----~~~l~-~~~--~~~~~~~~~ws 248 (771)
...|+++++.. .. .+.+. +.+ .+.+...++|.
T Consensus 85 --------------------------------------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 85 --------------------------------------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp --------------------------------------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred --------------------------------------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 35677776622 21 12221 223 34567899999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC---CCCccccceeec
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT---ESISSAFFPRFS 325 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt---~~~~~~~~p~~S 325 (771)
|.+++ |+.+. +..| ..||.++.... ...+ .......+. .......+..+.
T Consensus 127 ~~~~~----L~v~k-E~~P------------~~l~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERKP------------KRLYEVNGFPG---GFDL-------FVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp TTTTE----EEEEE-ESSS------------EEEEEEESTT----SS---------EEEE-HHHH-HT--SS---EEEEE
T ss_pred CCCCE----EEEEe-CCCC------------hhhEEEccccC---ccce-------eeccccccccccceeccccceEEc
Confidence 99987 77664 3333 24565553000 0000 000000000 011234667788
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
|....|+.+|... ..|..+|.++
T Consensus 180 p~t~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 180 PRTGHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp TTTTEEEEEETTT----------TEEEEE-TT-
T ss_pred CCCCeEEEEECCC----------CeEEEECCCC
Confidence 8888888888764 4577777443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.019 Score=58.81 Aligned_cols=91 Identities=22% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHCCcEEEEECCCCCCC---CChhhh-hc--CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHH
Q 004141 561 FLSSVGYSLLIVNYRGSLG---FGEEAL-QS--LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634 (771)
Q Consensus 561 ~la~~G~~Vv~~d~rG~~~---~g~~~~-~~--~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a 634 (771)
...+.+..+|.++.|--++ +|.... +. +..-..++..+|....+.+|++........|+++|.|+||++++++=
T Consensus 106 ~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfR 185 (492)
T KOG2183|consen 106 LAPELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFR 185 (492)
T ss_pred hhHhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHH
Confidence 3346788899999885211 222211 00 00111234578888888898887556678899999999999999999
Q ss_pred hhCCCceeEEEe-cCCcc
Q 004141 635 GQAPDKFVAAAA-RNPLC 651 (771)
Q Consensus 635 ~~~p~~~~~~v~-~~p~~ 651 (771)
.++|..+.++.+ .+|+.
T Consensus 186 lKYPHiv~GAlAaSAPvl 203 (492)
T KOG2183|consen 186 LKYPHIVLGALAASAPVL 203 (492)
T ss_pred hcChhhhhhhhhccCceE
Confidence 999987766554 44544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.1 Score=56.45 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=22.0
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.|..+|+ ++++. +++.-. .+..+.||+||+.+++++..
T Consensus 127 ~i~~yDw-----------------~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 127 FICFYDW-----------------ETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp EEEEE-T-----------------TT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CEEEEEh-----------------hHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 4888888 55543 444322 26789999999999998755
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=62.88 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCCCCCCC-cchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC-
Q 004141 535 SCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG- 611 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~-~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~- 611 (771)
..+-+|+.+|||++.+... ....+. ++..+.|+.|+.+||.-.++ .......+++.-|.-|++.+.
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999998765332 222333 34457899999999987544 233445889999999999863
Q ss_pred --CCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 612 --LANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 612 --~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
....+||++.|.|.||.+.+..+.+
T Consensus 463 llG~TgEriv~aGDSAGgNL~~~VaLr 489 (880)
T KOG4388|consen 463 LLGSTGERIVLAGDSAGGNLCFTVALR 489 (880)
T ss_pred HhCcccceEEEeccCCCcceeehhHHH
Confidence 2457899999999999987766543
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0087 Score=50.45 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=48.1
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
..|+|++.++.|+..|.+.++.+.++|.. .+++.+++.||+.... ...-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~-~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAG-GSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecC-CChHHHHHHHHHHH
Confidence 48999999999999999999999999875 5899999999987642 22345667777775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.58 Score=48.60 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=100.1
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEec-CCcceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecCCC
Q 004141 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~ 175 (771)
+.+...+|.|.-. +++ +.....|.-.+|.+.. ......+.-. ....+ ..+++.|+|-.. +|+-.+.+++
T Consensus 187 ~Rit~l~fHPt~~~~lv-a~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~------~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLV-AVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSG------PVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceEEEEecccCcceEE-EEccCCCcEEEEecCCCCCccCceEEe-ccCCc------cccceEecCCChhheeeeccCce
Confidence 4578889999887 444 3333335444555431 1111111111 11111 237899999654 4544555555
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.+...+................|.....+..+-+..+.+.....+-+||+.++. ...+ .-.+-.+.++++.|--.+
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCCch
Confidence 443222211111111111112222222233332333333333456667765443 3334 233447889999998887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
+..++- .+ ....++|+-. + .+.. ..-...+...+.+..|||+|-.|
T Consensus 337 ----~laT~s-------------~D-~T~kIWD~R~-------l-------~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 337 ----FLATAS-------------LD-QTAKIWDLRQ-------L-------RGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred ----heeecc-------------cC-cceeeeehhh-------h-------cCCCCcceecccccceeeeeEEcCCCCce
Confidence 444331 11 1233444310 0 1111 12334566679999999999888
Q ss_pred EEEecCCCCCCCCccccccceeeec
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+....+. .|.++|.
T Consensus 385 ~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDN-----------EIRVFDS 398 (498)
T ss_pred EeeccCC-----------ceEEeec
Confidence 8877664 4777775
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.15 Score=54.54 Aligned_cols=102 Identities=12% Similarity=0.160 Sum_probs=57.4
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-e
Q 004141 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-Q 231 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~ 231 (771)
.+..+.|.-+|.+|+.+.-....+.-+...... ..+..+.....-.....|-|---..+ ...+..+.++|+..+++ +
T Consensus 523 ~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lf-VaTq~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLF-VATQRSVRIYDLSKQELVK 601 (733)
T ss_pred ccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEE-EEeccceEEEehhHHHHHH
Confidence 346889999999999988765544323221111 11111111111111222333321111 22346788888877653 4
Q ss_pred eccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 232 ~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
.| .++...+..++.+|.|.. |+..+
T Consensus 602 kL--~tg~kwiS~msihp~GDn----li~gs 626 (733)
T KOG0650|consen 602 KL--LTGSKWISSMSIHPNGDN----LILGS 626 (733)
T ss_pred HH--hcCCeeeeeeeecCCCCe----EEEec
Confidence 44 556667888999999998 88876
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.1 Score=54.44 Aligned_cols=138 Identities=17% Similarity=0.208 Sum_probs=83.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+....|||.-+.++.+...+ + +..+|+-........... .|. .+..+++|||-...|+....
T Consensus 167 vRll~ys~skr~lL~~asd~-G---~VtlwDv~g~sp~~~~~~-~Hs-----AP~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK-G---AVTLWDVQGMSPIFHASE-AHS-----APCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC-C---eEEEEeccCCCcccchhh-hcc-----CCcCcceecCCccceEEEec--------
Confidence 56889999999988776544 3 666774322233332211 110 01258999998776655321
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
-+..|+++|....+...- +..+.....++|+++|.. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 235789999876543332 234446678999999986 665
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpD 327 (771)
.. -.+.|+.+|+-. ....+..+..+..++...+|=|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 43 334899999831 22334556666666777777553
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=50.69 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=67.3
Q ss_pred ccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeec
Q 004141 155 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAV 233 (771)
Q Consensus 155 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l 233 (771)
+.+-+|++|++.||...+ ..++.++...+.. .+..
T Consensus 13 itchAwn~drt~iAv~~~--------------------------------------------~~evhiy~~~~~~~w~~~ 48 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN--------------------------------------------NHEVHIYSMLGADLWEPA 48 (361)
T ss_pred eeeeeecCCCceEEeccC--------------------------------------------CceEEEEEecCCCCceec
Confidence 368899999999998532 2345555544444 2222
Q ss_pred c-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---c
Q 004141 234 K-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---V 309 (771)
Q Consensus 234 ~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~ 309 (771)
- -...+..+..+.|+|-+.+ |+-.+ .+|+..+|... .+++ .
T Consensus 49 htls~Hd~~vtgvdWap~snr----Ivtcs-------------~drnayVw~~~------------------~~~~Wkpt 93 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNR----IVTCS-------------HDRNAYVWTQP------------------SGGTWKPT 93 (361)
T ss_pred eehhhhCcceeEEeecCCCCc----eeEcc-------------CCCCccccccC------------------CCCeeccc
Confidence 1 0344557778999999998 98876 23545666553 2222 2
Q ss_pred eecCCCCccccceeecCCCCEEEEEec
Q 004141 310 VNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
-.|...++....+.|||.+.++|..+.
T Consensus 94 lvLlRiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 94 LVLLRINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred eeEEEeccceeeEeecCcCceEEeccC
Confidence 334456778899999999999887664
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=52.17 Aligned_cols=160 Identities=9% Similarity=0.073 Sum_probs=81.7
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccc-cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEE---ecCCcc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMT-GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF---HVPQTV 145 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~-~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 145 (771)
..+.+..+.++..|...++-+ ..|-.+.. -...++++.++.+++|++..+ .++.+...+...+.. .+....
T Consensus 155 ~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G----~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 155 GDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEG----NVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp TTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEETTTTEEEEEBTTS----EEEEEEETTSSEEEEEEEESS-HH
T ss_pred cCCceEEEEECCCCCEeEeec-cccCCCCcccccccceECCCCeEEEEecCC----EEEEEeccCCcccccCcccccCcc
Confidence 445566666655554443222 22322111 234678888888888987655 577777433332222 211111
Q ss_pred -cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 146 -HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 146 -~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
...-+-.+.+.-+++.+...+|+......... --......||++|
T Consensus 230 e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g----------------------------------sHKdpgteVWv~D 275 (342)
T PF06433_consen 230 EKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG----------------------------------SHKDPGTEVWVYD 275 (342)
T ss_dssp HHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-----------------------------------TTS-EEEEEEEE
T ss_pred ccccCcCCcceeeeeeccccCeEEEEecCCCCC----------------------------------CccCCceEEEEEE
Confidence 00001111223466766666665544322110 0011346899999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++++...- ++-+..+.++..|.|.+= ++|.... ....|+++|.
T Consensus 276 ~~t~krv~R--i~l~~~~~Si~Vsqd~~P----~L~~~~~-------------~~~~l~v~D~ 319 (342)
T PF06433_consen 276 LKTHKRVAR--IPLEHPIDSIAVSQDDKP----LLYALSA-------------GDGTLDVYDA 319 (342)
T ss_dssp TTTTEEEEE--EEEEEEESEEEEESSSS-----EEEEEET-------------TTTEEEEEET
T ss_pred CCCCeEEEE--EeCCCccceEEEccCCCc----EEEEEcC-------------CCCeEEEEeC
Confidence 999986544 343334567888999987 7776522 2347999998
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.3 Score=43.68 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=112.4
Q ss_pred eEEEEEeechhh-cccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC
Q 004141 55 QAMFSISQPNLL-ANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132 (771)
Q Consensus 55 ~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~ 132 (771)
-|+|+..+.++. .++-.+.++.|.+...+. .++-.... .+.+....||-||.++ |+..-+ +...+|.+- .
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~-----~~PvL~v~WsddgskV-f~g~~D-k~~k~wDL~-S 103 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSH-----DGPVLDVCWSDDGSKV-FSGGCD-KQAKLWDLA-S 103 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhcc-----CCCeEEEEEccCCceE-EeeccC-CceEEEEcc-C
Confidence 344554333332 344455667777755422 11111111 1458899999999877 554433 333344333 3
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCC--eEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc--
Q 004141 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-- 208 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-- 208 (771)
++..++-.....+ ....|=+... -|+..+-+++.+ +|+...........- .+-+|..|-
T Consensus 104 ~Q~~~v~~Hd~pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~L-----PeRvYa~Dv~~ 166 (347)
T KOG0647|consen 104 GQVSQVAAHDAPV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQL-----PERVYAADVLY 166 (347)
T ss_pred CCeeeeeecccce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeec-----cceeeehhccC
Confidence 3444443333333 4666666554 455556565544 454221111110000 011122221
Q ss_pred CcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 209 GETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
--..+.....+|.+++|+++.. +++. .+-......++.-+|.+. .+..+-+ ....|..+|
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id 228 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYID 228 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecC
Confidence 1123444567899999976632 3332 455667788888889887 6555422 222455555
Q ss_pred cccccchhhhhhhhcCCCCCCcceec----CCCCccccceeecCCCCEEEEEecCC
Q 004141 287 VSLYKSEASELELKESSSEDLPVVNL----TESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
-+.+ + +.-+-++.+- ...-..+.+..|.|.-.+|+....+.
T Consensus 229 ~~~~--~---------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 229 DPNP--K---------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred CCCc--c---------CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCc
Confidence 3100 0 0000112221 11234578899999888888777663
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.05 Score=54.41 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=49.0
Q ss_pred ceEEEEEccCC-ceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSG-EVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..||.+|...= .+..+ ..+ ...+.++.|||-|+. +|..+ +++ .|.++..
T Consensus 251 ~nlY~~DmR~l~~p~~v--~~dhvsAV~dVdfsptG~E----fvsgs-------------yDk--sIRIf~~-------- 301 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNV--HKDHVSAVMDVDFSPTGQE----FVSGS-------------YDK--SIRIFPV-------- 301 (433)
T ss_pred ccceehhhhhhcccchh--hcccceeEEEeccCCCcch----hcccc-------------ccc--eEEEeec--------
Confidence 67888886421 12222 122 224668899999998 77766 233 4444544
Q ss_pred hhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecC
Q 004141 296 ELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
..+..+.+. ..-..+..+.||-|.++|+-.+.+
T Consensus 302 ---------~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 302 ---------NHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ---------CCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 334433332 223358899999999988655554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.48 Score=50.60 Aligned_cols=115 Identities=13% Similarity=0.064 Sum_probs=63.0
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.+..|+-||=.++..... .+++++|+.+.....+-. . ...+| +-.+.|.
T Consensus 230 svTal~F~d~gL~~aVGts~-----------G~v~iyDLRa~~pl~~kd-h-----------~~e~p------i~~l~~~ 280 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTST-----------GSVLIYDLRASKPLLVKD-H-----------GYELP------IKKLDWQ 280 (703)
T ss_pred cceEEEecCCceeEEeeccC-----------CcEEEEEcccCCceeecc-c-----------CCccc------eeeeccc
Confidence 47788899888877765543 369999998866533211 1 11222 3455664
Q ss_pred cC--CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 398 SD--GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 398 ~D--g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+. ...| ++. ......|| |..+|+.-.......++....+-++++.+++.-.++.. .+.|+-++.
T Consensus 281 ~~~~q~~v-~S~-Dk~~~kiW--d~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m-~~yyiP~LG 346 (703)
T KOG2321|consen 281 DTDQQNKV-VSM-DKRILKIW--DECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKM-HTYYIPSLG 346 (703)
T ss_pred ccCCCceE-Eec-chHHhhhc--ccccCCceeeccccCCcCceeeecCCceEEEecCCCcc-eeEEccccC
Confidence 43 2223 332 22223344 77777765544444445545566677766655555544 345554554
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.69 Score=45.90 Aligned_cols=220 Identities=15% Similarity=0.113 Sum_probs=104.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+..-+|++|++++|...+.. ...||.+. +.+.-...+... .| |....++.|+|...+|+-.+.++..-
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~~-~~~~w~~~htls-~H-----d~~vtgvdWap~snrIvtcs~drnay-- 80 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSML-GADLWEPAHTLS-EH-----DKIVTGVDWAPKSNRIVTCSHDRNAY-- 80 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEec-CCCCceeceehh-hh-----CcceeEEeecCCCCceeEccCCCCcc--
Confidence 366779999999999876542 23344433 333222222211 11 11236899999999998876554321
Q ss_pred CccCC-CCCCCCC--CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCC
Q 004141 180 TFSLG-STKGGSS--DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 180 ~~~~~-~~~~~~~--~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.|... .....+. ......-..-+.|+|.-..-.++.+...|-|+=.+..+-= +..+.|-...+....|.|++-.
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 12210 0000000 0000000001225555444445555555555555444311 1111343446778899998865
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
|+..+-+.. | |-...|+-+++..| ....| ..+..=|+ ........+-+....|||+|..|+
T Consensus 161 ----laaGs~D~k--------~--rVfSayIK~Vdekp-ap~pW---gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 161 ----LAAGSTDGK--------C--RVFSAYIKGVDEKP-APTPW---GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred ----ecccccCcc--------e--eEEEEeeeccccCC-CCCCC---ccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 554431110 0 11133444442110 00000 00000010 111223345578899999999999
Q ss_pred EEecCCCCCCCCccccccceeeecCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|.+.+. .+.+.|....
T Consensus 223 wv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 223 WVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred EecCCC-----------ceEEeecCCC
Confidence 999885 2666665543
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.5 Score=43.70 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=65.2
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
++|-++|+ ...+ +..+..+...+...+.+-+|..||..+... .-|.++|.
T Consensus 159 GqvQi~dL-----------------~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG----------TLIRIFdt 211 (346)
T KOG2111|consen 159 GQVQIVDL-----------------ASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKG----------TLIRIFDT 211 (346)
T ss_pred ceEEEEEh-----------------hhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCc----------EEEEEEEc
Confidence 47888888 3333 355666777888999999999999888763 34777888
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
.+|+..+-. ....+ ...+..++||||+..|.++ +..++.+||.+..
T Consensus 212 ~~g~~l~E~----------RRG~d-------~A~iy~iaFSp~~s~Lavs-SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 212 EDGTLLQEL----------RRGVD-------RADIYCIAFSPNSSWLAVS-SDKGTLHIFSLRD 257 (346)
T ss_pred CCCcEeeee----------ecCCc-------hheEEEEEeCCCccEEEEE-cCCCeEEEEEeec
Confidence 777653211 11000 0134567899999877554 5688889998864
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.3 Score=43.87 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=92.9
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
+++.|+||.+.|+-+.+. ..+|.-++.++.-++.++
T Consensus 89 S~LTynp~~rtLFav~n~-------------------------------------------p~~iVElt~~GdlirtiP- 124 (316)
T COG3204 89 SSLTYNPDTRTLFAVTNK-------------------------------------------PAAIVELTKEGDLIRTIP- 124 (316)
T ss_pred cceeeCCCcceEEEecCC-------------------------------------------CceEEEEecCCceEEEec-
Confidence 799999999988776443 367888887777666663
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc------c
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP------V 309 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~------~ 309 (771)
...-.....+.|.-+|+ .+.+. + |..+||.+.++. ++.. .
T Consensus 125 L~g~~DpE~Ieyig~n~-----fvi~d-E-------------R~~~l~~~~vd~---------------~t~~~~~~~~~ 170 (316)
T COG3204 125 LTGFSDPETIEYIGGNQ-----FVIVD-E-------------RDRALYLFTVDA---------------DTTVISAKVQK 170 (316)
T ss_pred ccccCChhHeEEecCCE-----EEEEe-h-------------hcceEEEEEEcC---------------CccEEeccceE
Confidence 33333556677887665 23332 1 233555554421 1111 1
Q ss_pred eecCC--C-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCccceeeEEecccccCCCCCcc
Q 004141 310 VNLTE--S-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 310 ~~lt~--~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
..|-. . +......+|+|....|+|...++ ...||.++...... ..+.... ..-..
T Consensus 171 i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---------P~~I~~~~~~~~~l~~~~~~~~------------~~~~~ 229 (316)
T COG3204 171 IPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---------PIGIFEVTQSPSSLSVHASLDP------------TADRD 229 (316)
T ss_pred EeccccCCCCcCceeeecCCCCceEEEEEccC---------CcEEEEEecCCcccccccccCc------------ccccc
Confidence 11211 1 33467899999999998888775 24577776222111 0011110 00111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
++-..+.++.+.+....|++.+.. ...|..+|..+.-+..+.
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~G~~~~~ls 271 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDE--SRRLLEVDLSGEVIELLS 271 (316)
T ss_pred eEeeccccceecCCCCcEEEEecC--CceEEEEecCCCeeeeEE
Confidence 233345566676555555555432 234667777544344443
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.024 Score=59.35 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.+|++||.... ...+......+...|+. +..+++.+.... .......+.+.+-++.+.... ..
T Consensus 61 pivlVhG~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~ql~~~V~~~l~~~--ga 126 (336)
T COG1075 61 PIVLVHGLGGG--YGNFLPLDYRLAILGWLTNGVYAFELSGGDGT----------YSLAVRGEQLFAYVDEVLAKT--GA 126 (336)
T ss_pred eEEEEccCcCC--cchhhhhhhhhcchHHHhcccccccccccCCC----------ccccccHHHHHHHHHHHHhhc--CC
Confidence 58999996332 33455555567777777 788887753111 111122455555555555542 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCC--CceeEEEecCCcc
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 651 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p--~~~~~~v~~~p~~ 651 (771)
.++.++||||||..+.+++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 78999999999999999988877 7888888777643
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.029 Score=55.53 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=63.4
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCC
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPS 616 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ 616 (771)
|+++++|+..+. ...|..+...|... ..|+..+.+|.+... .....++++.+.. +.+.+.. ...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~----------~~~~~l~~~a~~yv~~Ir~~Q--P~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGE----------QPFASLDDMAAAYVAAIRRVQ--PEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCcccccc----------cccCCHHHHHHHHHHHHHHhC--CCC
Confidence 568999996554 34566677777665 889999998843211 1122355555443 3333321 245
Q ss_pred eEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccc
Q 004141 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~ 652 (771)
.+.|.|+|+||.+|..+|.+- .+.++.++++.++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888752 335666666655544
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.11 Score=57.09 Aligned_cols=142 Identities=11% Similarity=0.046 Sum_probs=92.2
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+-.||+...+-+... .....++.++.|||--.. ..+...+ .+.|-.+|+-
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~d--------------sG~lqlWDlR------- 207 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHD--------------SGYLQLWDLR------- 207 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecC--------------CceEEEeecc-------
Confidence 4467888998777655552 223447889999996543 3333322 2245566651
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
... -..+++.+.+.+....|+|++.+||...++ ..+.+||+.++....+. ++..
T Consensus 208 ---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~-----tInT 262 (839)
T KOG0269|consen 208 ---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKH-----TINT 262 (839)
T ss_pred ---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCcccee-----EEee
Confidence 233 347789999999999999999999877744 35888888776654321 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
+ ..+..+.|-|+-.+.+.+.+-.+...++.+|+.
T Consensus 263 i-------------apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 263 I-------------APVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred c-------------ceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 1 124577899988877777765566667777764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1 Score=47.27 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=82.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..+|.+..+.++....-.+.+..-.+.-+.+||-.+. ++.++- ..+.+.+||+
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~----lL~~as--------------d~G~VtlwDv--------- 194 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF----LLSIAS--------------DKGAVTLWDV--------- 194 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccce----eeEeec--------------cCCeEEEEec---------
Confidence 4577777777764322211333445667789998887 766552 2235667776
Q ss_pred hhhhcCCCCCCc--ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++.. ...+..+...+....|||-...|+..-.- ..+|+++|...... +...
T Consensus 195 --------~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~----------Dkki~~yD~~s~~s---~~~l------ 247 (673)
T KOG4378|consen 195 --------QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY----------DKKINIYDIRSQAS---TDRL------ 247 (673)
T ss_pred --------cCCCcccchhhhccCCcCcceecCCccceEEEecc----------cceEEEeecccccc---ccee------
Confidence 3332 22333455567889999987655433311 35799999765332 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
.|..-+..++|+++|.+|+.-. .+.+|+.+|+.+.
T Consensus 248 -----------~y~~Plstvaf~~~G~~L~aG~---s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 248 -----------TYSHPLSTVAFSECGTYLCAGN---SKGELIAYDMRST 282 (673)
T ss_pred -----------eecCCcceeeecCCceEEEeec---CCceEEEEecccC
Confidence 1222356889999998665433 3557888888543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.1 Score=42.31 Aligned_cols=61 Identities=25% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
++ .+++... .+. ++.+|+.+|+.. ...... ........+++.|++... -..++..++.+++
T Consensus 173 ~~-~v~~~~~-~g~--~~~~d~~tg~~~-w~~~~~-~~~~~~~~~~~~l~~~~~----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 173 DG-RVYVSSG-DGR--VVAVDLATGEKL-WSKPIS-GIYSLPSVDGGTLYVTSS----DGRLYALDLKTGK 233 (238)
T ss_dssp TT-EEEEECC-TSS--EEEEETTTTEEE-EEECSS--ECECEECCCTEEEEEET----TTEEEEEETTTTE
T ss_pred CC-EEEEEcC-CCe--EEEEECCCCCEE-EEecCC-CccCCceeeCCEEEEEeC----CCEEEEEECCCCC
Confidence 44 5655543 332 677799999855 333322 122235678888877662 3778998887654
|
... |
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.4 Score=50.88 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=74.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEE-EEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL-LIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~V-v~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+.++- +.+-| ++-+.|+.|++-|--.. ..|.. .-.|...|... +.-|.|-.+| ++. .|..+
T Consensus 275 reEi~-yYFnP----GD~KPPL~VYFSGyR~a---EGFEg-y~MMk~Lg~PfLL~~DpRleGG---aFY------lGs~e 336 (511)
T TIGR03712 275 RQEFI-YYFNP----GDFKPPLNVYFSGYRPA---EGFEG-YFMMKRLGAPFLLIGDPRLEGG---AFY------LGSDE 336 (511)
T ss_pred CCeeE-EecCC----cCCCCCeEEeeccCccc---Ccchh-HHHHHhcCCCeEEeeccccccc---eee------eCcHH
Confidence 44453 34445 45567999999983322 22321 12334556654 5567776332 221 22222
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
. +.+...|+.-.+.-..+.+.+.|.|.|||.+-|+.++++. ...|+|+.-|.+++-.+..-
T Consensus 337 yE~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 337 YEQGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 2 2344555544444447888999999999999999999864 35688999999988766543
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.044 Score=57.90 Aligned_cols=136 Identities=18% Similarity=0.222 Sum_probs=87.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCCC--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HG-g~~~~~~~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~ 588 (771)
.+.+..+....=++|.+..+. ....|+.+++-| |+....+. .-........+.|..|+..++|- ||.+..-..
T Consensus 62 hF~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~ 137 (514)
T KOG2182|consen 62 HFDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGD 137 (514)
T ss_pred hhhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCC
Confidence 343444444444555555432 334588888877 33321111 11234555678899999999997 665432111
Q ss_pred CC------CccccchhhHHHHHHHHHHcCC-CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 589 PG------KVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 589 ~~------~~~~~~~~D~~~~i~~l~~~~~-~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.. -...+.++|+..+|+.+..+.. .+..+++.+|.|+-|.+++++=.++|+++.+.|+.++.+
T Consensus 138 ~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 138 LSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 11 1123457788888888877643 455699999999999999999999999998888776544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.75 E-value=4.2 Score=47.98 Aligned_cols=85 Identities=8% Similarity=0.121 Sum_probs=50.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.|||.+ |...... .+.......++|-|.|.. |+.+... ...+.|..+.-
T Consensus 222 RkirV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~----iA~iq~~------------~sd~~IvffEr---------- 273 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSL----IAAIQCK------------TSDSDIVFFER---------- 273 (1265)
T ss_pred eeEEEeccc-chhhccc-CcccccccceeecCCCCe----Eeeeeec------------CCCCcEEEEec----------
Confidence 578888877 5443331 344445678899999987 7766522 22234555543
Q ss_pred hhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecC
Q 004141 298 ELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 298 ~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+|-+. .+.......+....|+.++..|+.....
T Consensus 274 -------NGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 274 -------NGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred -------CCccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 22211 1122223337889999999988876544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.14 Score=55.75 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=66.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....+-+|-...+||-. .+-+.+++ +......++..... .+.+++||+||+++|-.-..
T Consensus 40 ~~gLa~~p~Sgl~aYpA-----GCvVVlfn~~~~tQ~hlvnssRk---------~~t~vAfS~~GryvatGEcG------ 99 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPA-----GCVVVLFNVDSCTQSHLVNSSRK---------PLTCVAFSQNGRYVATGECG------ 99 (1080)
T ss_pred CCcccccccccceeecc-----CcEEEEEcccccchhheecccCc---------ceeEEEEcCCCcEEEecccC------
Confidence 34456677777788752 23344444 33333344443222 24799999999988773111
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
..+.+-||+++.-. +-.+ ......+.-++|||.+++ |
T Consensus 100 ------------------------------------~~pa~kVw~la~h~vVAEf--vdHKY~vtcvaFsp~~ky----v 137 (1080)
T KOG1408|consen 100 ------------------------------------RTPASKVWSLAFHGVVAEF--VDHKYNVTCVAFSPGNKY----V 137 (1080)
T ss_pred ------------------------------------CCccceeeeeccccchhhh--hhccccceeeeecCCCcE----E
Confidence 34677889987654 3333 456678889999999998 9
Q ss_pred EEEeecCc
Q 004141 259 VFVGWSSE 266 (771)
Q Consensus 259 ~~~~~~~~ 266 (771)
+-++..++
T Consensus 138 vSVGsQHD 145 (1080)
T KOG1408|consen 138 VSVGSQHD 145 (1080)
T ss_pred Eeeccccc
Confidence 98875544
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.66 Score=49.65 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=64.1
Q ss_pred CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--
Q 004141 240 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 317 (771)
Q Consensus 240 ~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-- 317 (771)
..+..+.|+-||-. ++..+ ..+++|++|| -+.++-.+-.+..
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778889988876 66544 4458999998 4444433333332
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+....|-+.+..=..++.+. .-|.+||-.+|+.....+ +...+..+|+-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 245556644422222233332 235667766666422111 11235677888
Q ss_pred cCCCEEEEEeeeCCeeEEEEEE
Q 004141 398 SDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
|++. ++|.+........|.|.
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred cCCc-eEEEecCCCcceeEEcc
Confidence 8887 66777767666666654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.45 Score=53.51 Aligned_cols=233 Identities=11% Similarity=-0.004 Sum_probs=138.4
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|.|.--+|+..-..+..+ .|+........++..+......+.|-+..---+++..+..|-||+....+..--.
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL- 89 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL- 89 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh-
Confidence 4889999999998876555443 4544344444455555555555566555333334445678888888765542220
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~ 314 (771)
...-..+....|.+.=-+ |+-.+ .+..|.+++. .+.. .-.||.
T Consensus 90 ~GHlDYVRt~~FHheyPW----IlSAS---------------DDQTIrIWNw-----------------qsr~~iavltG 133 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPW----ILSAS---------------DDQTIRIWNW-----------------QSRKCIAVLTG 133 (1202)
T ss_pred ccccceeEEeeccCCCce----EEEcc---------------CCCeEEEEec-----------------cCCceEEEEec
Confidence 233346777888888777 77665 3346777776 5554 567889
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc------------------eeeEEeccc
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK------------------IVDVIPVVQ 376 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~------------------~~~~~~~~~ 376 (771)
++..+...+|.|....|+-.|-+. .+.+||..+=..+....+ .+.+++.+-
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999999999888888888765 367777665443333222 111222211
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE--ecCCCCCceeeEEeecCCEEE
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR--ITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~--l~~~~~~~~~~~~s~dg~~l~ 448 (771)
.. ++.++.-.+|.|--- |+++..++....||+++.. ...+. .......++...|.|..+.|+
T Consensus 203 EG--------HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnet-KaWEvDtcrgH~nnVssvlfhp~q~lIl 266 (1202)
T KOG0292|consen 203 EG--------HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNET-KAWEVDTCRGHYNNVSSVLFHPHQDLIL 266 (1202)
T ss_pred cc--------cccccceEEecCCcc-eEEecCCcceeeEEEeccc-cceeehhhhcccCCcceEEecCccceeE
Confidence 11 223455556666544 6677777777889998853 32221 112222445555665555443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.1 Score=48.41 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=40.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEe-cCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
..+...+||+||.+|+- ++...++.+| .+...++... +..-+ ..+.||||+..-+.+.++
T Consensus 252 ~~V~~L~fS~~G~~LlS-----GG~E~VLv~Wq~~T~~kqfLPRLgs~I----------~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAYLLS-----GGREGVLVLWQLETGKKQFLPRLGSPI----------LHIVVSPDSDLYSLVLED 313 (792)
T ss_pred cccceeEEecCCceEee-----cccceEEEEEeecCCCcccccccCCee----------EEEEEcCCCCeEEEEecC
Confidence 45788999999999864 3566789999 3333344433 23222 689999999987776543
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.86 Score=44.61 Aligned_cols=170 Identities=10% Similarity=0.079 Sum_probs=88.6
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..--+||+++|. -++| +..+..+..++|+-+|.. +|++- ..++.+..+||
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~-----~FASv-------------gaDGSvRmFDL------ 226 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD-----VFASV-------------GADGSVRMFDL------ 226 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc-----eEEEe-------------cCCCcEEEEEe------
Confidence 456788988873 3556 677888999999997775 44441 13345666666
Q ss_pred hhhhhhhcCCCCCCcc-eecCCCCc---cccceeecCC-CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 294 ASELELKESSSEDLPV-VNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~lt~~~~---~~~~p~~SpD-G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..-+. +-+.++.. .....+|++. =+++|....+ ..++.++|+.--..-.
T Consensus 227 -----------R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d----------S~~V~iLDiR~P~tpv----- 280 (364)
T KOG0290|consen 227 -----------RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD----------SNKVVILDIRVPCTPV----- 280 (364)
T ss_pred -----------cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC----------CceEEEEEecCCCcce-----
Confidence 22222 11222211 1223344442 2334433332 3456666654322210
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC---cEEEec-CCCCCceeeEEee-c
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG---ELLRIT-PAESNFSWSLLTL-D 443 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg---~~~~l~-~~~~~~~~~~~s~-d 443 (771)
..+- .+...+..++|.|.++.-+.+...+...-||-++..-+ +--.+. ...+.+....|++ .
T Consensus 281 ---a~L~----------~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 281 ---ARLR----------NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQ 347 (364)
T ss_pred ---ehhh----------cCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccC
Confidence 0000 02235678899999988888877666666775543222 100111 1122355566764 6
Q ss_pred CCEEEEEEe
Q 004141 444 GDNIIAVSS 452 (771)
Q Consensus 444 g~~l~~~~~ 452 (771)
++++.++..
T Consensus 348 ~Dwiai~~~ 356 (364)
T KOG0290|consen 348 PDWIAICFG 356 (364)
T ss_pred CCEEEEEec
Confidence 677766553
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.12 Score=55.57 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=81.4
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH---------H------HCCcEEEEECCCCCCCC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL---------S------SVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l---------a------~~G~~Vv~~d~rG~~~~ 580 (771)
..+..+..|++.... .....|+||++-|||+.+.........-.| . ..-..++-.|.+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 357789999987652 445679999999999876432211111111 0 11145677776644445
Q ss_pred ChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEEecCC
Q 004141 581 GEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARNP 649 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v~~~p 649 (771)
.-+-.......-.....+|...++ +|+.+.+......+.|.|.|++|..+-.+|.. . .-.++++++.+|
T Consensus 132 SYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGNg 211 (454)
T KOG1282|consen 132 SYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGNG 211 (454)
T ss_pred cccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecCc
Confidence 332211111111112356666665 56666666667889999999999766665542 2 124789999999
Q ss_pred ccch
Q 004141 650 LCNL 653 (771)
Q Consensus 650 ~~~~ 653 (771)
+.+.
T Consensus 212 ~td~ 215 (454)
T KOG1282|consen 212 LTDP 215 (454)
T ss_pred ccCc
Confidence 8764
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.32 Score=50.44 Aligned_cols=170 Identities=13% Similarity=0.078 Sum_probs=100.6
Q ss_pred cCceEEEEEccCCc---eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+||+.+.+ .....+++....++...|+|-... -+|.+. .++.|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 44788899985332 222223777778899999998766 555441 3346888888
Q ss_pred hhhhhhhhcCCCCCCcceec-CC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC--CCccc
Q 004141 293 EASELELKESSSEDLPVVNL-TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~l-t~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~ 367 (771)
+++....+ +. ......+..|+.+...++|..+-. .+.++|+.+++.. .+..
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~l- 320 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRL- 320 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhh-
Confidence 44433222 22 233456677888877777776542 3556776665541 1110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-Ee--cCCCCCceeeEEeecC
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI--TPAESNFSWSLLTLDG 444 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l--~~~~~~~~~~~~s~dg 444 (771)
...-+.++++.|--.+++.+++.++...||-+.--.++.. .| ....-.+...-|||.+
T Consensus 321 -------------------h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 321 -------------------HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred -------------------hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 1112456677777777888887777777885432223322 12 1222245667899999
Q ss_pred CEEEEEE
Q 004141 445 DNIIAVS 451 (771)
Q Consensus 445 ~~l~~~~ 451 (771)
..|+.++
T Consensus 382 gtl~TT~ 388 (498)
T KOG4328|consen 382 GTLLTTC 388 (498)
T ss_pred CceEeec
Confidence 8876655
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.15 Score=55.21 Aligned_cols=132 Identities=20% Similarity=0.272 Sum_probs=75.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH--------------HH------HHCCcEEEEECCCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA--------------FL------SSVGYSLLIVNYRGS 577 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~--------------~l------a~~G~~Vv~~d~rG~ 577 (771)
+..+..|++...+ .....|+|+++-|||+.+.......... .+ -.+-..++.+|.+-.
T Consensus 49 ~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPvG 126 (433)
T PLN03016 49 NVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANIIFLDQPVG 126 (433)
T ss_pred CeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcEEEecCCCC
Confidence 4567888887653 3457899999999988643111000000 01 012267888887654
Q ss_pred CCCChhhhhcCCCCccc-cchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEE
Q 004141 578 LGFGEEALQSLPGKVGS-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~-~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v 645 (771)
.||...... ...... ..++++..++....+ .+.....++.|+|.|+||..+-.+|.. . +-.+++++
T Consensus 127 tGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkGi~ 204 (433)
T PLN03016 127 SGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQGYM 204 (433)
T ss_pred CCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcccceeeE
Confidence 555432111 111111 123566666654433 344456789999999999877666542 1 12478999
Q ss_pred ecCCccch
Q 004141 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 205 iGNg~t~~ 212 (433)
T PLN03016 205 LGNPVTYM 212 (433)
T ss_pred ecCCCcCc
Confidence 99987654
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.03 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCeEEEEEcChhHHHHHHHHhh
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3589999999999999877653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.18 E-value=3.3 Score=41.11 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=36.9
Q ss_pred CCCCccccCCCEEEEEeeeCCeeEEEEEECCCC-cEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 391 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg-~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
+..++|+|=-.++ ++...+|-..+| |+.+. ++.++..-...++...|+.||..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 4567788775544 444445555555 55443 35555555445777899999998877654
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.034 Score=54.13 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.9
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC----CceeEEEecCC
Q 004141 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNP 649 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~p 649 (771)
..|++++.+...-.+++|.+.|||.||.+|.+++...+ +++..+....+
T Consensus 69 ~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 69 KSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 45555554421112446999999999999999988743 45666664443
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.066 Score=59.42 Aligned_cols=47 Identities=21% Similarity=0.301 Sum_probs=31.8
Q ss_pred chhhHHHHHHHHHHcC----CCC---CCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 596 DVNDVLTAIDHVIDMG----LAN---PSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~----~~d---~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
..+=+.+||+++.+.. ..+ |..|.++||||||.+|..++. +|..+.+
T Consensus 155 QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~ 208 (973)
T KOG3724|consen 155 QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQG 208 (973)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccc
Confidence 3555667777776532 223 677999999999999977665 3544443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.07 E-value=2.8 Score=42.76 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=64.7
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+..|.+||+.++....- .........+..+|..+. |+..+ .. .+|.++|.-.
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs-------------sd--r~irl~DPR~------ 331 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS-------------SD--RHIRLWDPRT------ 331 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC-------------CC--CceeecCCCC------
Confidence 457899999998876544 344456777889998886 66544 22 2677787521
Q ss_pred hhhhhcCCCCCCc--ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLP--VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~--~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.++. ..++..+..-+.+..|||-..++ |++... .+.+.+||+.+..
T Consensus 332 ---------~~gs~v~~s~~gH~nwVssvkwsp~~~~~-~~S~S~---------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 332 ---------GDGSVVSQSLIGHKNWVSSVKWSPTNEFQ-LVSGSY---------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCCceeEEeeecchhhhhheecCCCCceE-EEEEec---------CCeEEEEEeccCC
Confidence 2233 34567777789999999987765 343221 2457778876644
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.6 Score=51.14 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=34.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
+....|--|+..|.++...+ .+++++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 44555556666665554332 244444 222222223333444 6999999999999987654
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.88 E-value=5.7 Score=41.56 Aligned_cols=98 Identities=20% Similarity=0.155 Sum_probs=52.7
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCc-----cccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCC
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAH-----SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 390 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~-----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~ 390 (771)
+....+.+++|||++|+.+....-...|.. ....+|+.+|..+.+.. ... -..++-..+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 345788999999998766655431111111 11256788887663311 000 011111100000 1124
Q ss_pred CCCCccccCCCEEEEEee----eCCeeEEEEEECCC
Q 004141 391 ILSNPWLSDGCTMLLSSI----WGSSQVIISVNVSS 422 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~----~~~~~~l~~~d~~t 422 (771)
+..+.+.+|++.|++-.. .....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 667889999997766655 23456899999754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.61 Score=52.39 Aligned_cols=94 Identities=19% Similarity=0.269 Sum_probs=59.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC-cceEE--EecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS-QLEKE--FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~-~~~~~--~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
....++||.|+.+|-.-.. | + +.+| +-+ ..... +.+. -.|..| .+++||+||.+|+-..
T Consensus 208 ~t~~~~spn~~~~Aa~d~d--G--r-I~vw~d~~~~~~~~t~t~lH-WH~~~V------~~L~fS~~G~~LlSGG----- 270 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSD--G--R-ILVWRDFGSSDDSETCTLLH-WHHDEV------NSLSFSSDGAYLLSGG----- 270 (792)
T ss_pred ceeEEeccccceEEEeccC--C--c-EEEEeccccccccccceEEE-eccccc------ceeEEecCCceEeecc-----
Confidence 4568899999999864322 2 2 5566 433 11111 1111 111222 6999999999887632
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~ 253 (771)
....|.+|.+++++.+-| |. ...+..+.||||+..
T Consensus 271 ---------------------------------------~E~VLv~Wq~~T~~kqfL---PRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 271 ---------------------------------------REGVLVLWQLETGKKQFL---PRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ---------------------------------------cceEEEEEeecCCCcccc---cccCCeeEEEEEcCCCCe
Confidence 337899999999994444 43 346788999999996
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.29 Score=53.04 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=76.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH--------------HHH------HHCCcEEEEECCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL--------------AFL------SSVGYSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~--------------~~l------a~~G~~Vv~~d~rG 576 (771)
.+..+..|++.... .....|+|+++-|||+.+......... ..+ -.+-..++.+|.+-
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anllfiDqPv 127 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANIIFLDQPV 127 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcEEEecCCC
Confidence 35567777776553 345679999999998765321110000 001 01225788888765
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhh----C------CCceeEEE
Q 004141 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAA 645 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~----~------p~~~~~~v 645 (771)
..||......... .....+.+|+..+++...+ .+.....++.|+|.|+||..+-.+|.. . +-.+++++
T Consensus 128 GtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi~ 206 (437)
T PLN02209 128 GSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGYV 206 (437)
T ss_pred CCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeEE
Confidence 5555432111010 1111235666666654444 344455689999999999877666542 1 12468899
Q ss_pred ecCCccch
Q 004141 646 ARNPLCNL 653 (771)
Q Consensus 646 ~~~p~~~~ 653 (771)
+.+|..+.
T Consensus 207 igng~td~ 214 (437)
T PLN02209 207 LGNPITHI 214 (437)
T ss_pred ecCcccCh
Confidence 99987764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.18 Score=52.14 Aligned_cols=135 Identities=15% Similarity=0.090 Sum_probs=74.3
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec--C
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL--T 313 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l--t 313 (771)
-.....+..++.|||+++ ++-.+ ..+.|..+++..+.+..+.++.......-+..... .
T Consensus 139 ~~H~~s~~~vals~d~~~----~fsas---------------k~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~ 199 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKR----VFSAS---------------KDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK 199 (479)
T ss_pred ccccCcceEEEeeccccc----eeecC---------------CCcceeeeehhcCcccccccccchhhhhccCCCCcccc
Confidence 345557788999999996 55444 22355555543222222222211000001111111 2
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+...+.|+||++||+...+ ..+.+|+..+.+..+..++... .+.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d-----------~~v~Iw~~~t~ehv~~~~ghr~-------------------~V~~ 249 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRD-----------RHVQIWDCDTLEHVKVFKGHRG-------------------AVSS 249 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCC-----------ceEEEecCcccchhhccccccc-------------------ceee
Confidence 344457788999999999986654 3577899888777554333221 2445
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
++|-..-..| |+.+.+....+|.++.
T Consensus 250 L~fr~gt~~l-ys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 250 LAFRKGTSEL-YSASADRSVKVWSIDQ 275 (479)
T ss_pred eeeecCccce-eeeecCCceEEEehhH
Confidence 5665444445 4555566677776653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=2.4 Score=46.73 Aligned_cols=57 Identities=9% Similarity=0.093 Sum_probs=33.6
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.+.+.+|.-||++|+.+..++. +++=.-+|+ |+..-. .+. -.....||||.+.++|.
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGa----vIVGsvdGN--RIwgKeLkg~--------~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGA----VIVGSVDGN--RIWGKELKGQ--------LLAHVLWSEDLEQALFK 174 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCC----EEEEeeccc--eecchhcchh--------eccceeecccHHHHHhh
Confidence 3678899999999999877541 222222221 121110 000 01367799999988885
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=5.7 Score=39.65 Aligned_cols=83 Identities=14% Similarity=0.148 Sum_probs=50.5
Q ss_pred CceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+.+|.+|+...=+. ..+ -+....+..++..|.|| |+.+- .++..|..++|
T Consensus 106 DG~i~iw~~~~W~~~~sl--K~H~~~Vt~lsiHPS~K-----LALsV--------------g~D~~lr~WNL-------- 156 (362)
T KOG0294|consen 106 DGHIIIWRVGSWELLKSL--KAHKGQVTDLSIHPSGK-----LALSV--------------GGDQVLRTWNL-------- 156 (362)
T ss_pred CCcEEEEEcCCeEEeeee--cccccccceeEecCCCc-----eEEEE--------------cCCceeeeehh--------
Confidence 36788888654322 223 23344588999999999 55543 13346777777
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
-.|..-.+..-......+.|+|.|.+++....+
T Consensus 157 ---------V~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 157 ---------VRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred ---------hcCccceeeccCCcceeeEEcCCCCEEEEEecc
Confidence 444332222222334558999999988776654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=3.9 Score=40.64 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~l 167 (771)
..++..+|+||-+.|..+-+ +..++.++...|+..+.+.+.. .+ ....+.|.-+|+++
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~-------DpE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FS-------DPETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cC-------ChhHeEEecCCEEE
Confidence 45889999999999955543 5578999998888877776643 21 11477787777644
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.4 Score=41.44 Aligned_cols=176 Identities=17% Similarity=0.129 Sum_probs=103.2
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|-.+|..+|++..+. +........+..-|||.. .+.- ....|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd---------------~~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD---------------TGLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec---------------CcceeEEecC--------
Confidence 3467888999999998884 455556777788899874 3321 1115777775
Q ss_pred hhhhhcCCCCCCcceecC--C--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLT--E--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt--~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++.+.++.+ . .......++|.++|. |.|+.+. |.+. ++|-.++ +
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~~-----------~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPARN-----------V 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCcccC-----------c
Confidence 566554433 2 234567899999998 7888775 3211 2222221 1
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~dg~~l~~ 449 (771)
+.++..+.. ...+.+|-.|||. ++|++-.+ ..|.+||..++..+.+..... ..+...++..-+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222222111 1346778899997 66665433 358888998887777765443 2233344443344554
Q ss_pred EEeCCCCCCeEEEEEec
Q 004141 450 VSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 450 ~~~~~~~p~~l~~~~~~ 466 (771)
+. -...++++++..
T Consensus 249 tt---wg~g~l~rfdPs 262 (353)
T COG4257 249 TT---WGTGSLHRFDPS 262 (353)
T ss_pred ec---cCCceeeEeCcc
Confidence 42 233457776643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.62 Score=45.60 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=96.7
Q ss_pred CCccCceEEEEEccCCceee---cc-----------CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004141 213 AGKRQPSLFVININSGEVQA---VK-----------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~---l~-----------~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
.+..+..|.+||++...-.. +. .......+..+.|-|-... +..++. .
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----mFtssS--------------F 122 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----MFTSSS--------------F 122 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----eeeccc--------------c
Confidence 34467889999987543111 10 1122346778889887666 555441 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--EEEEEecCCCCCCCCccccccceeeec
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~--~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+..|-++|. ++-+......-++.+.+-+|||=.. .|+-...+ ..++.+.|+
T Consensus 123 DhtlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr----------~~~VrLCDi 175 (397)
T KOG4283|consen 123 DHTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTR----------DVQVRLCDI 175 (397)
T ss_pred cceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecC----------CCcEEEEec
Confidence 225666775 4444333333445566777887554 23333333 257888899
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 432 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~ 432 (771)
++|...-...+.. ..+-.+.|||-...++++.+.++..+||-|...+|-...+....
T Consensus 176 ~SGs~sH~LsGHr-------------------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 176 ASGSFSHTLSGHR-------------------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred cCCcceeeecccc-------------------CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 8887543332221 13456789999999999999999999999888877776665433
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.3 Score=53.38 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=54.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.++|++.-+...|- .........++||++|++ ++..- .+ .+....+|.+.
T Consensus 58 CvVVlfn~~~~tQ~hlv-nssRk~~t~vAfS~~Gry----vatGE--cG---------~~pa~kVw~la----------- 110 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLV-NSSRKPLTCVAFSQNGRY----VATGE--CG---------RTPASKVWSLA----------- 110 (1080)
T ss_pred cEEEEEcccccchhhee-cccCcceeEEEEcCCCcE----EEecc--cC---------CCccceeeeec-----------
Confidence 56667777665444441 122235678899999997 65431 11 02223444443
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
..+....+.++...+...+|||-+++|+-+....
T Consensus 111 -------~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQH 144 (1080)
T KOG1408|consen 111 -------FHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQH 144 (1080)
T ss_pred -------cccchhhhhhccccceeeeecCCCcEEEeecccc
Confidence 3345566777888899999999999998776554
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.13 Score=56.36 Aligned_cols=128 Identities=16% Similarity=0.122 Sum_probs=78.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCC----hhhh--hcCCC
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEAL--QSLPG 590 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g----~~~~--~~~~~ 590 (771)
.|..-+++|.+.. ++ ++.+=||++.. ...+.. .+..-.++||+++.-|- |..+.. .++. .....
T Consensus 16 ~i~fev~LP~~WN--gR---~~~~GgGG~~G-~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN--GR---FLQVGGGGFAG-GINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc--cC---eEEECCCeeeC-cccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 4666677887432 11 44444444432 222211 13344588999999993 211111 1111 00011
Q ss_pred CccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 591 KVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
+++...+.+...+-+.|++. +...+++-+..|.|-||.-+++.|.++|+.|.++++.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 22333344555555666665 33568899999999999999999999999999999999988764
|
It also includes several bacterial homologues of unknown function. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.18 Score=55.11 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=95.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS 133 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~ 133 (771)
+-|.|..++.-++.+...+.|.+||+.. ....+.||.. ......+.|+|-|.+.|--+.. . =+.+|+..
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtgh-----~~~~~sv~f~P~~~~~a~gStd--t---d~~iwD~R 142 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTGH-----LLNITSVDFHPYGEFFASGSTD--T---DLKIWDIR 142 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhcc-----ccCcceeeeccceEEecccccc--c---cceehhhh
Confidence 3466666677778888888999999842 2233444332 2345667799999877432221 1 24455322
Q ss_pred --cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcc
Q 004141 134 --QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 211 (771)
Q Consensus 134 --~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 211 (771)
........ ..+. ...+.|+|||++++-..++...+ .|+...++-.+.+..+........+.+.---+
T Consensus 143 k~Gc~~~~~s---~~~v------v~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Ll 211 (825)
T KOG0267|consen 143 KKGCSHTYKS---HTRV------VDVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLL 211 (825)
T ss_pred ccCceeeecC---Ccce------eEEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhh
Confidence 11222221 1111 15789999999998877744333 34432222222222222222222232221122
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
..+..+..+-.||+++=++..-. -+....+....|.|||+.
T Consensus 212 a~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 212 APGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred ccCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 33445678889998764443321 233456778899999984
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.88 Score=46.17 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=83.3
Q ss_pred CcceEEEEEeech-hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 004141 52 NGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 130 (771)
Q Consensus 52 dg~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~ 130 (771)
.|--|.++..... |.++...+.|+++-... +.- .+...||......+...+|||.-+.+.+...-+ +.-.||.+.
T Consensus 213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W--~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~D-gsIrIWDiR 288 (440)
T KOG0302|consen 213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSW--KVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCD-GSIRIWDIR 288 (440)
T ss_pred cceeeecccccccccccCccccceEeeeecc-Cce--eecCccccccccchhhhccCCccCceEEeeecC-ceEEEEEec
Confidence 3444444443222 66666777777765543 221 122234444446688899999999886544333 444455444
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004141 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+.+...+.. ....++| .-++|+-+...||+..
T Consensus 289 s~~~~~~~~~--kAh~sDV------NVISWnr~~~lLasG~--------------------------------------- 321 (440)
T KOG0302|consen 289 SGPKKAAVST--KAHNSDV------NVISWNRREPLLASGG--------------------------------------- 321 (440)
T ss_pred CCCccceeEe--eccCCce------eeEEccCCcceeeecC---------------------------------------
Confidence 3322222222 1111222 6889999988777743
Q ss_pred ccCCccCceEEEEEccC---CceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 211 TYAGKRQPSLFVININS---GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~---~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
....+-+||+.. +++...- .-....+.++.|+|.... ++.++
T Consensus 322 -----DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s----~iaas 366 (440)
T KOG0302|consen 322 -----DDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDS----VIAAS 366 (440)
T ss_pred -----CCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCc----eEEec
Confidence 235778888753 3222210 233457889999998776 55554
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=6.5 Score=41.95 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=73.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+|++..+...... ......+..+.|+|+++. ++.... ....|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~--------------~d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGS--------------SDGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEec--------------CCCcEEEEEC----------
Confidence 67888888775544441 223556788999999984 444411 1113434465
Q ss_pred hhhcCCCCCCccee--cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
..+.... +..+.... ...|+|++..++..+.+ ..+.+++...... . +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------~~~~~~~~~~~~~-~-------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD-----------GTIRLWDLRSSSS-L-------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC-----------CcEEEeeecCCCc-E-------EEEE-
Confidence 3333322 33333332 23899999666523322 3467777655443 0 0000
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
.. . ...+....|.|++..++. ...++...+| +..++.....
T Consensus 281 ~~-~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~ 321 (466)
T COG2319 281 SG-H--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSS 321 (466)
T ss_pred ec-C--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEE
Confidence 00 0 012334578888886766 4444555566 7666654433
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.062 Score=57.62 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=54.4
Q ss_pred cchHHHHHHHHCCcEE----EE--ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhH
Q 004141 554 SYSKSLAFLSSVGYSL----LI--VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 627 (771)
Q Consensus 554 ~~~~~~~~la~~G~~V----v~--~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG 627 (771)
.|...++.|.+.||.. ++ .|.|-+.. ....-...+...|+.+.+. ...+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~---~~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKK---NGKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCCCc
Confidence 5778899999988753 22 45554221 0011134555555555544 26799999999999
Q ss_pred HHHHHHHhhCCC------ceeEEEecCCcc
Q 004141 628 FLTTHLIGQAPD------KFVAAAARNPLC 651 (771)
Q Consensus 628 ~~a~~~a~~~p~------~~~~~v~~~p~~ 651 (771)
.++..++...+. .+++.|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 999998887643 477888777543
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.12 E-value=3.1 Score=46.06 Aligned_cols=121 Identities=7% Similarity=0.000 Sum_probs=62.6
Q ss_pred HHHHHHhhcCccccceEEEecC------CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc
Q 004141 28 SKLLQDFTNISSIDKAWTFNSG------NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA 101 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~------s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~ 101 (771)
.-+|.++..||+.....++|.. ...++.+++- ...+.++++. ..++..+.++... ..+..
T Consensus 14 ~p~~~~l~~i~~~~~~~~~~~~v~lTc~dst~~~l~~G---------sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~ 79 (726)
T KOG3621|consen 14 APLTEVLERIPALLQPGFFPARVKLTCVDATEEYLAMG---------SSAGSVYLYN--RHTGEMRKLKNEG---ATGIT 79 (726)
T ss_pred cchhhhhhhhhhhhccccCcceEEEEEeecCCceEEEe---------cccceEEEEe--cCchhhhcccccC---ccceE
Confidence 3466677777777665555531 2233344433 3345566643 3444444444322 11335
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
.....|++...+|+.... +.-.++.+.... ....++.......-. ..++.||+||+++++.
T Consensus 80 ~~~~vs~~e~lvAagt~~--g~V~v~ql~~~~p~~~~~~t~~d~~~~~r------VTal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTAS--GRVSVFQLNKELPRDLDYVTPCDKSHKCR------VTALEWSKNGMKLYSG 142 (726)
T ss_pred EEEEecchhHhhhhhcCC--ceEEeehhhccCCCcceeeccccccCCce------EEEEEecccccEEeec
Confidence 566789998888875443 222233333211 122233332211112 2699999999999874
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=4.1 Score=46.04 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=58.9
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
.+.+|.||..+|+... ....+++-.+. .+.. ...+... .....|+|.++| .+..+ +...
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~-~~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLT-PGASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccC-CCCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 5566889999998742 12355553331 1212 1122222 346789999999 66544 4432
Q ss_pred CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 122 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
...+++.+. ..++... ++.. ...| ..+..+..|+||.++|.+.+..
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~~ 476 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEKD 476 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEecC
Confidence 334444444 5454433 2222 1111 1348999999999999997643
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.94 E-value=7.1 Score=38.55 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=67.6
Q ss_pred cCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC-ceeEEEecccccch
Q 004141 216 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP-CALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~-~~l~~~d~~~~~~~ 293 (771)
...++.+.|+++|..... ..+ ...+-.+.|||-.++ +++++--++.-|+ ++..|. +-+..+|.
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irl---WDiRrasgcf~~lD~------ 230 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRL---WDIRRASGCFRVLDQ------ 230 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEE---EEeecccceeEEeec------
Confidence 347889999999988776 343 346778999999998 8887733321110 111111 12333443
Q ss_pred hhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 294 ASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
.++... +.-+.+.+.+.+.+|+.||.+++....++ ++.+|+...|...
T Consensus 231 ----------hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 231 ----------HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ----------ccCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 122221 11233456688999999999988766553 4777777666653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.90 E-value=2.8 Score=44.74 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=43.9
Q ss_pred ccceEEEecCCCCCccEEEEEeecCccee---eee--eeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+.|.|||+ |++..-...... .+. .........|++++. ++++.+.+...
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 456789999996 776432111000 000 000112357999997 77777777766
Q ss_pred CccccceeecCCCCEEEEEec
Q 004141 316 ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~ 336 (771)
.......+|+|+|+. ++..+
T Consensus 183 ~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred cCCCccceECCCCCE-EEEcc
Confidence 666778999999984 44444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1551 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.24 Score=47.67 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeE
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~ 643 (771)
-.+.+|+|-||||.+|..+...++.-++-
T Consensus 194 ~g~~~~~g~Smgg~~a~~vgS~~q~Pva~ 222 (371)
T KOG1551|consen 194 LGNLNLVGRSMGGDIANQVGSLHQKPVAT 222 (371)
T ss_pred cccceeeeeecccHHHHhhcccCCCCccc
Confidence 46799999999999999998877654433
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.53 Score=51.05 Aligned_cols=155 Identities=12% Similarity=0.099 Sum_probs=85.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCC--CCCCCCccCCCCCCcccccCCcCccc-CCccCceEEEEEccCCceee
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDWEEDWGETY-AGKRQPSLFVININSGEVQA 232 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~g~~~-~~~~~~~l~v~d~~~~~~~~ 232 (771)
..+..--+|+.|+..+.+.+.+ .|..... -.......+..|..-..+-..-.+++ .+.-...|++||+.++..+.
T Consensus 77 NDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l 154 (735)
T KOG0308|consen 77 NDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATL 154 (735)
T ss_pred hhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhh
Confidence 4555666777776666555443 2332111 11223334555555444422212333 23346799999999885422
Q ss_pred cc--------CCC--CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 233 VK--------GIP--KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 233 l~--------~~~--~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
+. .+. ...++.+++-.+.|. ++..+ .....|..+|.-
T Consensus 155 ~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr-------------- 201 (735)
T KOG0308|consen 155 VASFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR-------------- 201 (735)
T ss_pred hhhccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc--------------
Confidence 21 000 111233444444442 33222 122367777751
Q ss_pred CCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 303 SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 303 ~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
...+..+|..+...++....++||++++-.+.+. .|.+||+..
T Consensus 202 --t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLgq 244 (735)
T KOG0308|consen 202 --TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLGQ 244 (735)
T ss_pred --cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeeccc
Confidence 3345667777777899999999999998877663 477888754
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=9.1 Score=42.92 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=52.3
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeec---CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
.+...+.|+||.+++.+...+ | ..+|++.-+ ..|..+.++... .+. ......++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~----g----~~~V~va~V~R~~~G~P~~L~~~~----~~~-----------~~~~~~sl 491 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQN----G----KSRVQVAGIVRNEDGTPRELTAPI----TLA-----------ADSDADTG 491 (573)
T ss_pred eeEEEEECCCccEEEEEEEeC----C----ccEEEEEEEEeCCCCCeEEccCce----ecc-----------cCCCccee
Confidence 488999999999999988654 2 234655332 223323332211 000 00134578
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.|..|+..++.....++....+.+.+..|..+.+.
T Consensus 492 ~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~ 526 (573)
T PRK13614 492 AWVGDSTVVVTKASATSNVVPELLSVDAGQPQQLA 526 (573)
T ss_pred EEcCCCEEEEEeccCCCcceEEEEEeCCCCcccCC
Confidence 89988875555555555666777777666655433
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.43 E-value=9.3 Score=38.26 Aligned_cols=86 Identities=13% Similarity=0.169 Sum_probs=59.1
Q ss_pred cCceEEEEEccCCce---eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+..+|-+.|+...+. ..+ ...+..+.-++.+-||.. |+..+. ...-|.++|.
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaSt--------------kGTLIRIFdt----- 211 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATAST--------------KGTLIRIFDT----- 211 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEecc--------------CcEEEEEEEc-----
Confidence 347888999876655 455 455667888999999997 776652 2235677776
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCC--CccccceeecCCCCEEEEEecCC
Q 004141 293 EASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|+ ...+..+ ...+...+||||+++|+..|...
T Consensus 212 ------------~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 212 ------------EDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred ------------CCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 4444 3334332 23477899999999999888764
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.14 Score=48.59 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=52.7
Q ss_pred CcEEEEECCCCCCCCChh-hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC----C--
Q 004141 566 GYSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P-- 638 (771)
Q Consensus 566 G~~Vv~~d~rG~~~~g~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p-- 638 (771)
-..|++|-||-..-.... ...............|+.+|.++.+++.. +...++|+|||.|+.+...++... |
T Consensus 45 ~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~ 123 (207)
T PF11288_consen 45 VCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLKEEIAGDPLR 123 (207)
T ss_pred CCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHHHHhcCchHH
Confidence 478999999954322111 00000111223347899999998777642 345899999999999999998764 2
Q ss_pred -CceeEEEecCCcc
Q 004141 639 -DKFVAAAARNPLC 651 (771)
Q Consensus 639 -~~~~~~v~~~p~~ 651 (771)
.++++-++..++.
T Consensus 124 ~rLVAAYliG~~v~ 137 (207)
T PF11288_consen 124 KRLVAAYLIGYPVT 137 (207)
T ss_pred hhhheeeecCcccc
Confidence 2345555554543
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.35 E-value=6.7 Score=41.83 Aligned_cols=60 Identities=17% Similarity=0.102 Sum_probs=39.8
Q ss_pred CCCCccccCCCEEEEEeeeC-----------------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 391 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 391 ~~~~~~s~Dg~~l~~~~~~~-----------------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+. +++-.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~tdn 202 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFCDN 202 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEEcc
Confidence 45788999996 77755421 013699999999888877655433344678887764 44443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.19 Score=45.16 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-------CCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-------p~~~~~~v~~~p~~ 651 (771)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 4456666666666643 47899999999999999887642 14466666666654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2521 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.5 Score=43.77 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
..+.+.+.+..|.++|..+.+++.+..++.|+.++.+-+.++.|..........+++.+.+|++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~ 290 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSV 290 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhc
Confidence 467788889999999999999999999999999999999999998766666778899999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.8 Score=45.68 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=26.9
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCC
Q 004141 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~ 253 (771)
++..+..||+++++..... .......+.+.+|.|+..-
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 4478889999888765441 1344557788999999884
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=14 Score=41.46 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=54.4
Q ss_pred cCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.+..|.+|++++++...+ .. ....+..+... +.. ++..+ ....|-++|+
T Consensus 309 ~D~tVkVW~v~n~~~l~l--~~~h~~~V~~v~~~--~~~----lvsgs---------------~d~~v~VW~~------- 358 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNL--LRGHTGPVNCVQLD--EPL----LVSGS---------------YDGTVKVWDP------- 358 (537)
T ss_pred CCceEEEEeccCcceEEE--eccccccEEEEEec--CCE----EEEEe---------------cCceEEEEEh-------
Confidence 457999999999988777 33 34455555554 443 44443 1125666666
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..++ ...|+.+.+.+.+..+.+. ..++-.+.+ ..|.+||+.+.
T Consensus 359 ----------~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~ 402 (537)
T KOG0274|consen 359 ----------RTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTK 402 (537)
T ss_pred ----------hhceeeeeecCCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCch
Confidence 4444 4566777777776655443 444444433 23667776665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=5.4 Score=43.54 Aligned_cols=238 Identities=10% Similarity=0.070 Sum_probs=121.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+-.+.+.|---+++-.--. +.-+||.. ......+.+++..-. .....|=+--.+|+..+++-..+
T Consensus 15 RVKsVd~HPtePw~la~Lyn--G~V~IWny-etqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir-- 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYN--GDVQIWNY-ETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR-- 80 (794)
T ss_pred ceeeeecCCCCceEEEeeec--CeeEEEec-ccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE--
Confidence 45567777777766543322 32333322 222334444432111 13445555555566555444322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc--eeeccCCCCCCccceEEEecCCCCCccE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.+......+...+..+..+...+..-|-.--.++...+-.|-+||.+.+= .+.. ......+.+++|.|.....
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf--eGH~HyVMqv~fnPkD~nt--- 155 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF--EGHEHYVMQVAFNPKDPNT--- 155 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE--cCcceEEEEEEecCCCccc---
Confidence 12222222233334455555444433333333444456677778877652 2333 3345578899999955430
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
.+-. |.++ .|-++.+. .......|..+...+....+=|-|.+=+.++..
T Consensus 156 FaS~-------------sLDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 156 FASA-------------SLDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred eeee-------------eccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEecC
Confidence 3332 2344 34444441 233345677777778888888877655555543
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+ ...|.+||.++..-.+..++.. .++...+|.|.=. |+.+.+.++..+||
T Consensus 205 D---------D~tiKvWDyQtk~CV~TLeGHt-------------------~Nvs~v~fhp~lp-iiisgsEDGTvriW 254 (794)
T KOG0276|consen 205 D---------DLTIKVWDYQTKSCVQTLEGHT-------------------NNVSFVFFHPELP-IIISGSEDGTVRIW 254 (794)
T ss_pred C---------CceEEEeecchHHHHHHhhccc-------------------ccceEEEecCCCc-EEEEecCCccEEEe
Confidence 3 2457888888765544333321 1234445555433 66666667777766
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=92.74 E-value=15 Score=40.07 Aligned_cols=95 Identities=18% Similarity=0.183 Sum_probs=60.2
Q ss_pred ceEEEEEccCCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
-+-++++...++++++. -++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 236 ~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~-------- 288 (545)
T PF11768_consen 236 ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT-------- 288 (545)
T ss_pred eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc--------
Confidence 34566666666665542 1344445677899999998 87765 3347888885
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
. .....++...-.....+|.|||..++..+.+ .+|..+|..-+.
T Consensus 289 ---------~-~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q-----------GelQ~FD~ALsp 332 (545)
T PF11768_consen 289 ---------T-RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ-----------GELQCFDMALSP 332 (545)
T ss_pred ---------C-CCeeeeeeecccceEEEEcCCCcEEEEEcCC-----------ceEEEEEeecCc
Confidence 2 2334444444557788999999977665544 246677755433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.72 E-value=18 Score=39.68 Aligned_cols=169 Identities=14% Similarity=0.161 Sum_probs=87.9
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCc--ceEEEecCCcc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQ--LEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~ 145 (771)
+.+.+|.++..++.. +..++.- ....+...+..|.--+++..+++- ++.+|+ .+. ..+.... ..
T Consensus 74 sDD~~IrVfnynt~e-kV~~FeA-----H~DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeG--H~ 140 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGE-KVKTFEA-----HSDYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEG--HE 140 (794)
T ss_pred cCCceEEEEecccce-eeEEeec-----cccceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcC--cc
Confidence 444556665553331 2333322 235677888888777666554432 566662 222 2222221 11
Q ss_pred cccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC--cCcccCCccCceEEE
Q 004141 146 HGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED--WGETYAGKRQPSLFV 222 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~g~~~~~~~~~~l~v 222 (771)
| ....++|.| |-..+|..+-+.+.+ .|..........+..+..-.+-+.|-+- ---.+++..+..|-+
T Consensus 141 H-------yVMqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 141 H-------YVMQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKV 211 (794)
T ss_pred e-------EEEEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEE
Confidence 1 125888999 566677766666544 4443322222333333333333334332 224456667789999
Q ss_pred EEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCc
Q 004141 223 ININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~ 266 (771)
||-.+....+. ..+. ..+..+.|.|.=. |+.++.+++
T Consensus 212 WDyQtk~CV~T--LeGHt~Nvs~v~fhp~lp-----iiisgsEDG 249 (794)
T KOG0276|consen 212 WDYQTKSCVQT--LEGHTNNVSFVFFHPELP-----IIISGSEDG 249 (794)
T ss_pred eecchHHHHHH--hhcccccceEEEecCCCc-----EEEEecCCc
Confidence 99998875554 2332 2455666777544 444444444
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.26 Score=45.07 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..+...++....+ ....+|.++|||+||.+|..++....
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444444333 24578999999999999999887653
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.1 Score=48.87 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=90.2
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEE-ecCCCCCccEEEEEeecCc
Q 004141 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSE 266 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~w-spDg~~~~~~l~~~~~~~~ 266 (771)
....+..|..+.....+....+....+..+-+|+...+. ...| -....++.-++. .++.. ++.++
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg---- 136 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG---- 136 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec----
Confidence 444577788777777775556666778899999987664 1222 223335666666 55544 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc------ee-----cC-CCCccccceeecCCCCEEEEE
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------VN-----LT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~-----lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
.-+..|+++|+ +++.. .+ +. ....++.+.+-.+.|..|+
T Consensus 137 ----------GLD~~IflWDi-----------------n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv-- 187 (735)
T KOG0308|consen 137 ----------GLDRKIFLWDI-----------------NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV-- 187 (735)
T ss_pred ----------CCCccEEEEEc-----------------cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE--
Confidence 12237888888 44422 11 11 1222355556666664333
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+. +....|.+||-.+.+...-..+. ..++..+..++||.+++ +++.++..+
T Consensus 188 sG---------gtek~lr~wDprt~~kimkLrGH-------------------TdNVr~ll~~dDGt~~l-s~sSDgtIr 238 (735)
T KOG0308|consen 188 SG---------GTEKDLRLWDPRTCKKIMKLRGH-------------------TDNVRVLLVNDDGTRLL-SASSDGTIR 238 (735)
T ss_pred ec---------CcccceEEeccccccceeeeecc-------------------ccceEEEEEcCCCCeEe-ecCCCceEE
Confidence 21 11356888888776642211111 11344555788998875 555677778
Q ss_pred EEEEEC
Q 004141 415 IISVNV 420 (771)
Q Consensus 415 l~~~d~ 420 (771)
||-+..
T Consensus 239 lWdLgq 244 (735)
T KOG0308|consen 239 LWDLGQ 244 (735)
T ss_pred eeeccc
Confidence 886543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.8 Score=43.07 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=52.9
Q ss_pred eEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004141 219 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
.+.++....+..+.+ ..+-..+.+++||||++. |++. . |+.+|++...+
T Consensus 133 ~~di~s~~~~~~~~~--lGhvSml~dVavS~D~~~----Iita-D--------------RDEkIRvs~yp---------- 181 (390)
T KOG3914|consen 133 SFDILSADSGRCEPI--LGHVSMLLDVAVSPDDQF----IITA-D--------------RDEKIRVSRYP---------- 181 (390)
T ss_pred eeeeecccccCcchh--hhhhhhhheeeecCCCCE----EEEe-c--------------CCceEEEEecC----------
Confidence 344444444555555 344446789999999986 5554 2 44467776653
Q ss_pred hhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 299 LKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 299 ~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+.-.... ...+...+..+..-++ ..|+-.+ +...|++||+.+|..
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKL 227 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCc
Confidence 2222211 2234444666665543 3333222 235799999988775
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=9.7 Score=42.55 Aligned_cols=100 Identities=14% Similarity=0.119 Sum_probs=55.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+.+|.||..+++... ...++... .++..+.+... .....|+|.++| .+..+.+.. ..
T Consensus 338 s~avS~dg~~~A~v~~---------~~~l~vg~---~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv~~g~---~~ 395 (557)
T PRK13615 338 AATLSADGRQAAVRNA---------SGVWSVGD---GDRDAVLLDTR------PGLVAPSLDAQG-YVWSTPASD---PR 395 (557)
T ss_pred cceEcCCCceEEEEcC---------CceEEEec---CCCcceeeccC------CccccCcCcCCC-CEEEEeCCC---ce
Confidence 4556778888888732 12344422 22233333222 346789999999 676554322 22
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCC
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 174 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~ 174 (771)
.+... ..|.... +..+... ++.+..+..|+||.++|.+.+..
T Consensus 396 ~l~~~~~~G~~~~-v~v~~~~------~~~I~~lrvSrDG~R~Avi~~~~ 438 (557)
T PRK13615 396 GLVAWGPDGVGHP-VAVSWTA------TGRVVSLEVARDGARVLVQLETG 438 (557)
T ss_pred EEEEecCCCceEE-eeccccC------CCeeEEEEeCCCccEEEEEEecC
Confidence 33333 3344432 2333322 23348999999999999987643
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.2 Score=44.78 Aligned_cols=102 Identities=20% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+.| ||+.||-+.......+....+.+.+ .|.-+..+. .|. +. .. .+.....+.+..+-+.|.+.+..
T Consensus 26 ~~P-vViwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~--~~----s~~~~~~~Qv~~vce~l~~~~~L- 93 (306)
T PLN02606 26 SVP-FVLFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV--QD----SLFMPLRQQASIACEKIKQMKEL- 93 (306)
T ss_pred CCC-EEEECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc--cc----ccccCHHHHHHHHHHHHhcchhh-
Confidence 456 6677997644444466666666642 366555554 231 11 01 11111123333333334332222
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.+-+-++|+|.||.+.-.++.+.|+ .++-.|..++
T Consensus 94 ~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 SEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred cCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 2358999999999999999998876 3666665543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.38 E-value=6.3 Score=42.67 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=61.4
Q ss_pred CccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 214 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
+.....++++++.+|+++.-.-+.. ...+....|+.+-. .+|+. ....++..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-----ciyS~--------------~ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-----CIYSV--------------GADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccC-----ceEec--------------CCceeEEEEec-----
Confidence 4456789999999998766521122 22445555655544 34433 13335666665
Q ss_pred hhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 293 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
......+.-. ....+.+...||||+.|+..+ .+|-++|+++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444332 334578899999999887554 35899999887753
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=7.1 Score=43.73 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
....++.|+||+.+|++.. ....++..+.++..+.+... ... ..++|+++| .+..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~---~~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNG---SRTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecC---CCcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 4667899999999999833 23466666655544444432 222 589999998 55443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=12 Score=36.56 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=46.5
Q ss_pred CCCccccceeecCCCC-EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 314 ESISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~-~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
.+.+.++...|||-|- -|.|.+.. ...+++.|+.+....++.- ...+..|. .-...+.
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~~q~I~----------i~~d~~~~-~~tq~if 306 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVNHQVIV----------IPDDVERK-HNTQHIF 306 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCceeeEEe----------cCcccccc-ccccccc
Confidence 4677899999998664 35666643 3568899988766533211 11111111 0001234
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
.-.|+.++..++..+. .+++.+++.+
T Consensus 307 gt~f~~~n~s~~v~~e----~~~ae~ni~s 332 (344)
T KOG4532|consen 307 GTNFNNENESNDVKNE----LQGAEYNILS 332 (344)
T ss_pred cccccCCCcccccccc----hhhheeeccc
Confidence 5567777776665443 3456666544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.99 Score=44.98 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=83.7
Q ss_pred cCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 216 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
.+-.||-...+++ .+.+. ....+......+|+-|-....-++|..+ +.+.|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4455666655552 22221 1112223445688887653222233332 3347999998
Q ss_pred hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 293 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
..++ ...+..+.+.+...++-|+--.|+.....+ ..|.+|++++..-..+..+...
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~eg- 179 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEG- 179 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccccc-
Confidence 5554 456777888899999999987777766554 3488888887665433222210
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+-++.|+.||.+| ++..-+....+|+++
T Consensus 180 ---------------HrdeVLSvD~~~~gd~i-~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 180 ---------------HRDEVLSVDFSLDGDRI-ASCGMDHSLKLWRLN 211 (385)
T ss_pred ---------------ccCcEEEEEEcCCCCee-eccCCcceEEEEecC
Confidence 11124477899999965 444444555666655
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.27 Score=53.96 Aligned_cols=65 Identities=17% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CC-------CEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHH
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREK-GV-------ETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKK 768 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~-g~-------~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~ 768 (771)
--.+|+.||..|..+|+..+..+|+++.+. +. -.++.++||.+|+...+ ....+.+..+.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 368999999999999999999999998765 21 26899999999987654 3345789999999875
|
It also includes several bacterial homologues of unknown function. |
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=8.7 Score=42.92 Aligned_cols=160 Identities=9% Similarity=-0.039 Sum_probs=87.3
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
..++.|+||+.+|++... ..+.+...+ ..+.+.. .... ..|+|+++| .+..+.+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv~~g~------ 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWSTPASD------ 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEEeCCC------
Confidence 678999999999998431 245555333 3333322 2222 589999999 555432211
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
...+.... .+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~~-~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAWG-PDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEec-CCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 11222221 223333331 0112335788999999999 98
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCEEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~l~ 332 (771)
++....+ ..+|++.-+-. .++..+.| ........+..|..|++ |+
T Consensus 433 vi~~~~g------------~~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGA------------GPQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCC------------CCEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 8864322 12455433310 12222333 33344678899999887 66
Q ss_pred EEecCCCCCCCCccccccceeeecCCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+.... | ...+++++.+.+..
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g~~ 505 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGGPS 505 (557)
T ss_pred EEeccC----C---CCceEEEEECCCcc
Confidence 666432 1 23557777776433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=6.4 Score=41.11 Aligned_cols=161 Identities=12% Similarity=0.148 Sum_probs=94.3
Q ss_pred ccccCCcCc-ccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 202 GDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 202 ~~~~~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
..|...|.. +..+.....+.+||+++|++... ++ ....+....|.|..-. ++..+- ..
T Consensus 249 Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--~~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D 308 (463)
T KOG0270|consen 249 LSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--ITHHGKKVQTLEWHPYEPS----VLLSGS--------------YD 308 (463)
T ss_pred HHhccccceeEEecCCCceEEEEEcCCCCccee--hhhcCCceeEEEecCCCce----EEEecc--------------cc
Confidence 345555543 33555678999999999999888 44 4557889999998776 555541 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..+.+.|.-. ....+..-+. .+.+....|.|-....+|.+.++ | .|+-+|+...
T Consensus 309 ~~V~l~D~R~-------------~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----G------~v~~~D~R~~ 362 (463)
T KOG0270|consen 309 GTVALKDCRD-------------PSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----G------TVYYFDIRNP 362 (463)
T ss_pred ceEEeeeccC-------------ccccCceEEe---ccceEEEEecCCCceeEEEecCC----c------eEEeeecCCC
Confidence 2455555410 0012222221 23466778888777777777554 3 4777776554
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
+. .+-+- . ++...+..+++++.-..++.+.+......||.++....+..
T Consensus 363 ~~-~vwt~-------~----------AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 363 GK-PVWTL-------K----------AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CC-ceeEE-------E----------eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 31 11000 0 11223556666665556766666667778888877655433
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=9.2 Score=43.32 Aligned_cols=86 Identities=20% Similarity=0.172 Sum_probs=49.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
.+...+.|+||.+++.+.... | ..+|++--+.. .+...++.-. .+.. . .....++.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~----g----~~~v~va~V~R~~~G~~~l~~~~-~l~~---~----------l~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD----G----RRSLQIGRIVRDAKAVVSVEEFR-SLAP---E----------LEDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC----C----CcEEEEEEEEeCCCCcEEeeccE-Eecc---C----------CCccceeE
Confidence 688999999999999998653 1 23455433321 2222222111 0000 0 01245788
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
|..++..++......+...+|.+++++...
T Consensus 514 W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 998887444444444566799999875544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.57 E-value=5.8 Score=39.37 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=53.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..--+||+++|++..+. +..+.......-.|..+ |+.++.++. ...++|+-
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 45568999999987662 33444455666677655 666663332 23333431
Q ss_pred hhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 298 ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
+.- ....+..+...+.+..|.-|.+ ++-.+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 111 2233344556788899988866 4444433 3477788754
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=91.56 E-value=4.6 Score=43.97 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=81.4
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+.+|.++...+++...|.-.-.+..+-.+.||-...+ .+++-...-..+... ..+-.+++.
T Consensus 182 draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~----qi~tVE~s~s~~g~~------~~d~ciYE~-------- 243 (545)
T PF11768_consen 182 DRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPY----QIHTVEQSISVKGEP------SADSCIYEC-------- 243 (545)
T ss_pred hhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCc----EEEEEEEecCCCCCc------eeEEEEEEe--------
Confidence 45788888888887777621122334456778864444 555432221111000 002222332
Q ss_pred hhhhhcCCCCCCcceecC----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 296 ELELKESSSEDLPVVNLT----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
...+.+++. .-...+...++||+.++|+..-.+. .|.++|...+..+.. ..
T Consensus 244 ---------~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~~~-ka---- 298 (545)
T PF11768_consen 244 ---------SRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTLLA-KA---- 298 (545)
T ss_pred ---------ecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeeeee-ee----
Confidence 112222221 2234577889999999998877663 488888765433211 00
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
.| .+..++|.|||. +++..+..|...+|-+-+..=+.+.+
T Consensus 299 ----------~~------~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLl 338 (545)
T PF11768_consen 299 ----------EF------IPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLL 338 (545)
T ss_pred ----------cc------cceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeec
Confidence 11 135678999998 55555556666666444433333333
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.9 Score=43.72 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=48.5
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|......+. ..+.|+.++++|.. ... ......+++... ++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~-~~~~v~~~~~~g~~---~~~-------~~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALR-GRRDVSALPLPGFG---PGE-------PLPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcC-CCccEEEecCCCCC---CCC-------CCCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 4555566664 46899999998842 210 111123333332 2233322 23457999999999999988
Q ss_pred HHhh---CCCceeEEEecCC
Q 004141 633 LIGQ---APDKFVAAAARNP 649 (771)
Q Consensus 633 ~a~~---~p~~~~~~v~~~p 649 (771)
++.+ .+..+..+++..+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 8775 3445666665543
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.36 Score=51.62 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=59.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-----------------HHHHHHHCCcEEEEECCCCCCCCChh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~G~~Vv~~d~rG~~~~g~~ 583 (771)
+..|.+.+++ ...++|+|+++.|||+.+....... ...-+... -.+|-+|.+-.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5566666542 5668999999999998753211110 00011111 35677775544556554
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 584 ALQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
.......+ ....-+|+..+.+.+.+. ..-...+.+|+|.|+||+-+..+|.
T Consensus 164 ~~~e~~~d-~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 164 LGDEKKKD-FEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccc-hhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHH
Confidence 11111111 111234555555444332 1112247899999999998887775
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=91.47 E-value=2.4 Score=41.90 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=72.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..|..+|+.+|+...-..... ...... -.++++. +++.. ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 578899998887654421211 123333 3446664 54442 3348999997
Q ss_pred hhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 296 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
.+|+...-.........+. ..++..|++...+ .+|+.+|..+|+..-. ..
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~---------~~ 103 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS---------IY 103 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE---------EE
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee---------ec
Confidence 6666432222222222222 3345556655522 2699999888775210 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
.... .... .........+++.+++... ...|+.+|+++|++.
T Consensus 104 ~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 104 LTSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp E-SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred cccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 0000 0000 0112233334666766543 467999999999874
|
... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.21 E-value=16 Score=42.87 Aligned_cols=74 Identities=16% Similarity=0.068 Sum_probs=40.9
Q ss_pred CccccCCC-EEEEEeeeCC-eeEEEEEECCCC-cEEEecCCCCCc-eeeEEeecCCEEEEEEeCC-CCCCeEEEEEecc
Q 004141 394 NPWLSDGC-TMLLSSIWGS-SQVIISVNVSSG-ELLRITPAESNF-SWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVD 467 (771)
Q Consensus 394 ~~~s~Dg~-~l~~~~~~~~-~~~l~~~d~~tg-~~~~l~~~~~~~-~~~~~s~dg~~l~~~~~~~-~~p~~l~~~~~~~ 467 (771)
+.++.|+. .+++.....+ ..++..+....+ ....++.+...+ ....++.+.+.++|.+... -+-..+|.+++..
T Consensus 345 ~~~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~ 423 (755)
T KOG2100|consen 345 PVFSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGS 423 (755)
T ss_pred ceEeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccc
Confidence 45666764 3333333344 566777776666 556666554422 2334456778888877553 2334456555543
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.14 Score=53.75 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
...+.+++++|..++.-++++|.|.|.|+||+.++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456778899999886677899999999999999987654
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.37 Score=52.76 Aligned_cols=75 Identities=21% Similarity=0.260 Sum_probs=46.6
Q ss_pred cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH
Q 004141 554 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 632 (771)
Q Consensus 554 ~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~-~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~ 632 (771)
.|..+++.|+..||. -.+++|. .-+|+..... +....-+..+...|+.+.+.. ..++|+|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~gA---PYDWRls~~~le~rd~YF~rLK~lIE~ay~~n--ggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYMA---AYDWRLSFQNTEVRDQTLSRLKSNIELMVATN--GGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceeec---ccccccCccchhhhhHHHHHHHHHHHHHHHHc--CCCeEEEEEeCCchHHHHH
Confidence 356789999999997 5666663 3344432110 000111334455555554431 2578999999999999998
Q ss_pred HHh
Q 004141 633 LIG 635 (771)
Q Consensus 633 ~a~ 635 (771)
++.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 775
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=90.83 E-value=6.8 Score=39.35 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=67.7
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
....|+++|+.+++...-. ......+..+.+.|+..+ |+..+.+ +..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~Sk--------------D~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASK--------------DHSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecC--------------CceEEEEec--------
Confidence 4589999999888754331 344557888899999988 7776632 235677776
Q ss_pred hhhhhcCCCCCCcceecCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 296 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+.....+.. +...+.+..||+||.+|+-...+. +|.+|+++..+
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~~~ 214 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNVKE 214 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecChhH
Confidence 5565555443 344688999999999988766654 46677666443
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.93 Score=36.63 Aligned_cols=68 Identities=9% Similarity=-0.021 Sum_probs=45.0
Q ss_pred cccCCCEEEEEeee---------------CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeE
Q 004141 396 WLSDGCTMLLSSIW---------------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 460 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~---------------~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l 460 (771)
..+|+..|||+.+. ....+|+++|+.|++.+.|..+-......++++|++.++++.. ...+|
T Consensus 5 v~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et---~~~Ri 81 (89)
T PF03088_consen 5 VDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET---GRYRI 81 (89)
T ss_dssp E-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG---GGTEE
T ss_pred EecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec---cCceE
Confidence 45564457776642 3456899999999999888766555567899999999988774 44567
Q ss_pred EEEEec
Q 004141 461 KYGYFV 466 (771)
Q Consensus 461 ~~~~~~ 466 (771)
.++.+.
T Consensus 82 ~rywl~ 87 (89)
T PF03088_consen 82 LRYWLK 87 (89)
T ss_dssp EEEESS
T ss_pred EEEEEe
Confidence 666654
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=25 Score=37.34 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=86.7
Q ss_pred ceEEEEEccC--CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 218 PSLFVININS--GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 218 ~~l~v~d~~~--~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
..+.+|+..+ .....+ ......+..+.|+|+++. ++..+. ....+..+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~-------- 185 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDL-------- 185 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEc--------
Confidence 5788888876 344444 334445668999999986 655531 1235777776
Q ss_pred hhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..+ ....+..+...+....|+|+|+.++.....+ ..|..||...+..... .
T Consensus 186 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~ 237 (466)
T COG2319 186 ---------RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------T 237 (466)
T ss_pred ---------CCCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------e
Confidence 332 3334444566788899999998333331221 2344556553222110 0
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~ 449 (771)
+ .+.. ... ...|++++..+ +....++...+|.+.........+......+....+.+++..++.
T Consensus 238 ~--------~~~~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 238 L--------SGHS-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred c--------CCCC-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 0 0000 000 11689999544 455556666666554322213333122233444567777776666
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.63 E-value=24 Score=36.87 Aligned_cols=146 Identities=15% Similarity=0.160 Sum_probs=77.9
Q ss_pred eEEEeCCCCCeEEEEecCC---CCCCeEEEEecCCcceEEEecCCcc----c--ccccCCCcccceeecCCCCeEEEEec
Q 004141 102 SAVVPSPSGSKLLVVRNPE---NESPIQFELWSQSQLEKEFHVPQTV----H--GSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
...++.++|... +..+.. .....|+.+..+|...+.+.++... . ...-.+..|.+++++|||+.|+.+.+
T Consensus 88 Egi~~~~~g~~~-is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 88 EGIAVPPDGSFW-ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred hHeEEecCCCEE-EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 345666777644 333321 1226788888556665544443322 1 23345567889999999998888766
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc------eeeccCCC---CCCccc
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE------VQAVKGIP---KSLSVG 243 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~------~~~l~~~~---~~~~~~ 243 (771)
....... . ...........|+.+|..+.. ..++...+ ....+.
T Consensus 167 ~~l~~d~----------~------------------~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~is 218 (326)
T PF13449_consen 167 SPLKQDG----------P------------------RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGIS 218 (326)
T ss_pred ccccCCC----------c------------------ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCce
Confidence 5421100 0 000001123567777776522 12221000 456788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecc
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 288 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 288 (771)
.+.+-+|++- |+.-..... + .....+||.+++.
T Consensus 219 d~~al~d~~l----LvLER~~~~----~----~~~~~ri~~v~l~ 251 (326)
T PF13449_consen 219 DIAALPDGRL----LVLERDFSP----G----TGNYKRIYRVDLS 251 (326)
T ss_pred eEEEECCCcE----EEEEccCCC----C----ccceEEEEEEEcc
Confidence 8999999985 554321110 0 1233489999973
|
|
| >PLN02454 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.76 Score=48.53 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~ 651 (771)
.+++...|+.+++...-..-+|.+.|||+||.+|+.+|... ...+.+++..+|-+
T Consensus 209 r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~~~~~~V~~~TFGsPRV 271 (414)
T PLN02454 209 RSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVSGADIPVTAIVFGSPQV 271 (414)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhcccccCCceEEEEeCCCcc
Confidence 56777888888776432223599999999999999887531 11245666666754
|
|
| >KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.17 E-value=7.5 Score=40.33 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=80.6
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC----ccceEEEecCCCCCccEEEEEeecCc-cee--eeee
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL----SVGQVVWAPLNEGLHQYLVFVGWSSE-TRK--LGIK 273 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~----~~~~~~wspDg~~~~~~l~~~~~~~~-~~~--~g~~ 273 (771)
...|....|+.++....--|++++.+++..+.+. .+.+. -..++...++|. |+|+..... .+| .-..
T Consensus 119 Gl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~-~~~~G~~~kf~N~ldI~~~g~-----vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 119 GIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLA-DEAEGKPFKFLNDLDIDPEGV-----VYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred eEEeccCCCeEEEEecceeeEEECCCCCcceecc-ccccCeeeeecCceeEcCCCe-----EEEeccccccchhheEEee
Confidence 3456666667777777788888898998877773 11111 234667788554 777543221 111 1112
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
.+-....+++.+|. .+...+.|-+.-......+.|||++.++|..... .+|.+
T Consensus 193 l~g~~~GRl~~YD~-----------------~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~----------~ri~r 245 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDP-----------------STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT----------ARIKR 245 (376)
T ss_pred ecCCCccceEEecC-----------------cccchhhhhhcccccccccCCCCCCEEEEEeecc----------ceeee
Confidence 22335568899986 6677777777777788899999999998887543 45666
Q ss_pred eecCCC
Q 004141 354 IDWPTN 359 (771)
Q Consensus 354 ~d~~~~ 359 (771)
+-+++.
T Consensus 246 ywi~g~ 251 (376)
T KOG1520|consen 246 YWIKGP 251 (376)
T ss_pred eEecCC
Confidence 655543
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.9 Score=42.31 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.+.| +|+.||-+............+.+.+ -|.-+.++..-. + ... .+.....+.+..+-+.|.+.+..
T Consensus 24 ~~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~-~-----~~~----s~~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGN-G-----VGD----SWLMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECC-C-----ccc----cceeCHHHHHHHHHHHHhhchhh
Confidence 3456 5667997655444455556666644 256665554321 1 111 11111223333333333332222
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCC
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 649 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p 649 (771)
.+-+-++|+|.||.++-.++.+.|+ .++..|..++
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 2348999999999999999998876 3676665553
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.57 Score=46.23 Aligned_cols=52 Identities=23% Similarity=0.253 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCcc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 651 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~ 651 (771)
+++...+..++++. ...+|.+.|||+||.+|..++... +..+.+....+|.+
T Consensus 112 ~~~~~~~~~~~~~~--p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQY--PDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhhC--CCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 34445555444442 356899999999999999877642 33466666666654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=89.86 E-value=13 Score=38.06 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=29.5
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCC----CcEEEecCCCCCcee-eEEeecC---CEEEEEEeC
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSS----GELLRITPAESNFSW-SLLTLDG---DNIIAVSSS 453 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t----g~~~~l~~~~~~~~~-~~~s~dg---~~l~~~~~~ 453 (771)
.....++|. |||+.- ....|+.++..+ .+.+.|..+.....+ ..++.+. +.|++.++.
T Consensus 190 g~~~D~~G~-ly~~~~--~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 190 GMAIDPNGN-LYFTDV--EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EEEEETTTE-EEEEEC--CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred eEEECCCCc-EEEecC--CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 345566664 666554 344688888765 355666554442222 3444444 566666643
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.8 Score=42.95 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=52.8
Q ss_pred cCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.++.|.+|.+......... -.|+ .+..++=+|+|.. |+-.+ -...||++.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg--~v~al~s~n~G~~----l~ag~---------------i~g~lYlWel------- 110 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPG--PVHALASSNLGYF----LLAGT---------------ISGNLYLWEL------- 110 (476)
T ss_pred cCccccccccCchhhhhhhccccc--ceeeeecCCCceE----EEeec---------------ccCcEEEEEe-------
Confidence 4567777776544321110 0222 2445677888885 55432 1227888888
Q ss_pred hhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCC
Q 004141 295 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+|.. ..+..+-..+...+||-||+.|+..+.+.
T Consensus 111 ----------ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg 145 (476)
T KOG0646|consen 111 ----------SSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDG 145 (476)
T ss_pred ----------ccccHHHHHHhhccceeEEEEeCCCcEEEecCCCc
Confidence 66764 45555666788999999999887666553
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=89.50 E-value=0.87 Score=45.52 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=85.9
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
-.+.+..+..+.+||+++|++.... +..-..+-.+.|+- .. ++..+. ++...+|.++.
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tl-ihHceaVLhlrf~n--g~----mvtcSk-------------DrsiaVWdm~s-- 306 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTL-IHHCEAVLHLRFSN--GY----MVTCSK-------------DRSIAVWDMAS-- 306 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHH-hhhcceeEEEEEeC--CE----EEEecC-------------CceeEEEeccC--
Confidence 4456678899999999999876552 33333455667762 22 444441 22234554443
Q ss_pred ccchhhhhhhhcCCCCCC-c-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 290 YKSEASELELKESSSEDL-P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~-~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+. . .+.|..+...+..+.|+ .|+|+-.+.+. .|.+|+..+.+..+...+
T Consensus 307 ---------------ps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-----------TikvW~~st~efvRtl~g 358 (499)
T KOG0281|consen 307 ---------------PTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-----------TIKVWSTSTCEFVRTLNG 358 (499)
T ss_pred ---------------chHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-----------eEEEEeccceeeehhhhc
Confidence 111 1 23455566667777774 57888777553 488899888776443322
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
. -.|+- +.--.|+ ++++.+.+...+|| |+..|..-++..+..
T Consensus 359 H--------------kRGIA-------ClQYr~r-lvVSGSSDntIRlw--di~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 359 H--------------KRGIA-------CLQYRDR-LVVSGSSDNTIRLW--DIECGACLRVLEGHE 400 (499)
T ss_pred c--------------cccce-------ehhccCe-EEEecCCCceEEEE--eccccHHHHHHhchH
Confidence 2 11211 2222454 66777666666666 666787666655443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=89.48 E-value=35 Score=37.19 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=16.4
Q ss_pred eEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 438 SLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 438 ~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
..|++ .+.|++.-.++..+-+|.++.
T Consensus 235 la~dp-~G~Lw~~e~Gp~~~DEiN~I~ 260 (454)
T TIGR03606 235 LAFTP-DGTLYASEQGPNSDDELNIIV 260 (454)
T ss_pred eEECC-CCCEEEEecCCCCCcEEEEec
Confidence 34556 345777777777777766654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.86 Score=45.47 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=45.9
Q ss_pred CCCCcEEEEEcCCCCCCCCC-cchHHHHHHH--HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS--SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVID 609 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la--~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~ 609 (771)
..+.| ||+.||-+.+.... .+......+. --|.-|.+++.-. + ...+..+... ..+.+..+.+ +.+.+
T Consensus 3 ~~~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~-~-~~~D~~~s~f-----~~v~~Qv~~vc~~l~~ 74 (279)
T PF02089_consen 3 PSPLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN-D-PSEDVENSFF-----GNVNDQVEQVCEQLAN 74 (279)
T ss_dssp TSS---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS-S-HHHHHHHHHH-----SHHHHHHHHHHHHHHH
T ss_pred CCCCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC-C-cchhhhhhHH-----HHHHHHHHHHHHHHhh
Confidence 34556 66779966543222 3333333322 2477777776522 1 0011111111 1133333333 33333
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCC
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p 649 (771)
.+.+. +-+.++|+|.||.+.-.++.+.++ .++-.|..++
T Consensus 75 ~p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 75 DPELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp -GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred Chhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 33232 469999999999999999988764 4666666553
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 771 | ||||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 1e-12 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 1e-12 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 2e-12 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-12 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 1e-11 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 2e-11 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 2e-11 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 1e-10 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 2e-09 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 3e-09 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 6e-09 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 6e-09 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 7e-09 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 4e-08 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 6e-08 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 6e-08 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 6e-08 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 6e-08 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 6e-08 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 6e-08 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 6e-08 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 6e-08 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 6e-08 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 6e-08 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 7e-08 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 7e-08 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 7e-08 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 7e-08 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 7e-08 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 7e-08 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 7e-08 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 8e-08 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 2e-07 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 5e-06 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-04 |
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 771 | |||
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 1e-66 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 4e-63 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 2e-35 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-32 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 1e-28 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 5e-26 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 4e-21 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 2e-19 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 9e-19 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 1e-18 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 1e-18 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-18 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 1e-17 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-17 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 9e-17 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 1e-16 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-16 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 2e-16 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 3e-16 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 4e-16 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 7e-16 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-14 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 6e-14 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 1e-13 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 1e-12 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 2e-12 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 2e-12 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 6e-11 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 6e-11 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 8e-10 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 5e-09 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 7e-09 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 5e-08 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 1e-07 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 3e-06 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 4e-06 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 5e-06 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 6e-06 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 6e-06 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 8e-06 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 1e-05 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 2e-05 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 4e-05 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 1e-04 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 1e-04 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 1e-04 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 2e-04 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 2e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 2e-04 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 2e-04 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 3e-04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 3e-04 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 4e-04 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 6e-04 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 6e-04 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 6e-04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 7e-04 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 7e-04 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 9e-04 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 9e-04 |
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 230 bits (589), Expect = 1e-66
Identities = 105/681 (15%), Positives = 205/681 (30%), Gaps = 138/681 (20%)
Query: 103 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 162
++ G KLLVV E L+ + K P
Sbjct: 26 SLQGVVDGDKLLVVGFSEGSVNAY--LYDGGETVKLNREPINSVL----------DPHYG 73
Query: 163 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEED-WGETYAGKRQPS 219
+I + +T ++ + K + + G +
Sbjct: 74 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR 133
Query: 220 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279
+ + ++ G ++ ++ P FV G+ +
Sbjct: 134 VALYALDGGGLR------------ELARLP-------GFGFVSDIRGDLIAGLGFFGGGR 174
Query: 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339
+L+ + + L + S SP K L
Sbjct: 175 VSLFTSNL-----SSGGLRV------------FDSGEGSFSSASISPGMKVTAGLE---- 213
Query: 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399
+ L +D + ++ D F ++I +L D
Sbjct: 214 -----TAREARLVTVDPRDGS-----------VEDLELPSKD-FSSYRPTAITWLGYLPD 256
Query: 400 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 459
G +++ G S V I GE + + + L ++ +S P+
Sbjct: 257 GRLAVVARREGRSAVFID-----GERVEAPQG----NHGRVVLWRGKLVTSHTSLSTPPR 307
Query: 460 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-IPVKG-----VSANL 513
+ + L P R + + + V+ V +
Sbjct: 308 I---VSLPSGEP----LLEGGLP----------EDLRRSIAGSRLVWVESFDGSRVPTYV 350
Query: 514 TK--GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 571
+ A P P +V++HGGP + S+ A L++ G+ +++
Sbjct: 351 LESGRAPTPG----------------PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394
Query: 572 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 631
NYRGS G+GEE + G ++ DV A + GLA+ ++ ++G S+GG++T
Sbjct: 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTL 452
Query: 632 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YGSKGKDSFTESPSVEDLTR 690
+ P F A A + + M +D ++E G
Sbjct: 453 CALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-------------GSREI 499
Query: 691 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750
S+SPI+H+ ++K P + R P+ L+ L +G + + P+ H I
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAIN 559
Query: 751 RPQSDFESFLNIGLWFKKYCK 771
+ + L + +
Sbjct: 560 TMEDAVKILLPAVFFLATQRE 580
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 4e-63
Identities = 110/690 (15%), Positives = 223/690 (32%), Gaps = 111/690 (16%)
Query: 106 PSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---GSVYADGWFEGI---- 158
P+ +G LV R + +S L ++V V G +A
Sbjct: 43 PAEAGRATLVRRRADGAE--------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94
Query: 159 --SWNSDETLIAYVAEEPSPSKPT--FSLGSTKGGSSDKDCNSWKGQGDW----EEDWGE 210
+ D+ L A+ + P + P + + GG D + E++
Sbjct: 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-VLLPERGEVWCMAEEFTG 153
Query: 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLS-----VGQVVWAPLNEGLHQYLVFVGWSS 265
+ L + ++ + + V +P +G + V++ W
Sbjct: 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DG--RQAVWLAWDH 209
Query: 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 325
P ++ + + + + + ++
Sbjct: 210 P----------RMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQAEWA 250
Query: 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385
PDG L+ + D + +LHR+D T + + E P
Sbjct: 251 PDGS-LIVAT-----D---RTGWWNLHRVDPATG----------AATQLCRREEEFAGPL 291
Query: 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 445
P ++ + V+ ++ SGEL+ + ++ +L T+ G
Sbjct: 292 WTPGMRWFAP---LANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATL-TVSGT 347
Query: 446 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-I 504
+ V++SP +V +D + + + + +
Sbjct: 348 RAVGVAASPRTAYEV---VELDTVTGRARTIGARHTD----------PVDPAYYPEPQIR 394
Query: 505 PVKG-----VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL 559
+ A++ P F + + P +V+ HGGP S + +
Sbjct: 395 TFTAPDGREIHAHIYP----PHSPDFTGPADELP----PYVVMAHGGPTSRVPAVLDLDV 446
Query: 560 AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619
A+ +S G + VNY GS G+G + L G+ G DV D + + G A+ +++
Sbjct: 447 AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLA 506
Query: 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 679
V GGS GG+ + D + P+ +L D+ S+ D
Sbjct: 507 VRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT-HDF------ESRYLDFL 558
Query: 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739
S E R+ ++P++ +V+ P + L G +D P ++ A+ GV
Sbjct: 559 IGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAY 617
Query: 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
+ F + HG R ++ + + +
Sbjct: 618 LSFEGEGHGFRRKETMVRALEAELSLYAQV 647
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-35
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 594 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 703
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYF---DIMNLADRV 257
Query: 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE---TKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 764 LWFKKYCK 771
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 37/232 (15%), Positives = 70/232 (30%), Gaps = 20/232 (8%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P ++ +HG S S +G + + RG G+ +Q++
Sbjct: 29 PGVLFVHGWGGSQHHSLVR--AREAVGLGCICMTFDLRGHEGYASMRQSV----TRAQNL 82
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
+D+ A D + + + + VVG S+GG+L+ P+ LAL
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSA-----------LLTRERPVEWLALRS 131
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+ + S D ++ ++ K + + D+
Sbjct: 132 PALYKDAH-WDQPKVSLNADPDLMDYR-RRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
VP YA A V H + + E + W +
Sbjct: 190 VPHPVMRNYADAFT-NARSLTSRVIAGADHALSVKEHQQEYTRALIDWLTEM 240
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 23/234 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P ++ HG + + + + G++++ ++ RG G ++ +
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYV---AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 594 ------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 641
D V++M + +V V+G S GG L+ P
Sbjct: 166 RGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR 225
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
+ L + + + + + D E + E T+ +
Sbjct: 226 KVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHEREN-EVFTKLGYIDVKNLAK 284
Query: 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
++K + +G D P S +A A + + V+P+ H R D
Sbjct: 285 RIKGDVLMCVGLMDQVCPPS--TVFA-AYNNIQSKKDIKVYPDYGHEPMRGFGD 335
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 5e-26
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 32/241 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-------------------- 577
P +V G + F S+GY +++ RG
Sbjct: 96 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 152
Query: 578 -LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 153 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 212
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ LC+ V D + + ++ +D
Sbjct: 213 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD-----KEEIVFRTLSYFDG 267
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
++ ++ K P +F +G D P S +A A ++ ++P + H
Sbjct: 268 VNFAARAKIPALFSVGLMDNICPPS--TVFA-AYNYYAGPKEIRIYPYNNHEGGGSFQAV 324
Query: 757 E 757
E
Sbjct: 325 E 325
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 96.0 bits (238), Expect = 4e-21
Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 17/223 (7%)
Query: 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
P IV + G + + L+ G++++ + Y LP + +
Sbjct: 172 GPFPGIVDMFGTGGGLL----EYRASLLAGKGFAVMALAYYNYED--------LPKTMET 219
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ A+++++ V ++G S GG L + A + N+
Sbjct: 220 LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVG 279
Query: 655 LMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ G T P + + + + ++ +FL+
Sbjct: 280 GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLV 339
Query: 712 GAQDLRVPVSNGLQYA-RALREKGVE-TKVIVFPNDVHGIERP 752
G D A + L+ G ++I +P H IE P
Sbjct: 340 GQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPP 382
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 90.6 bits (224), Expect = 2e-19
Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 17/222 (7%)
Query: 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P I+ + G + + L+ G++ L + Y LP + +
Sbjct: 157 PFPGIIDIFGIGGGLL----EYRASLLAGHGFATLALAYYNFED--------LPNNMDNI 204
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-- 653
+ A+ +++ + ++G S G + + + + +
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLG 712
A+ + IP Y + + L + + I K + P + ++G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 713 AQDLRVPVS-NGLQYARALREKGVET-KVIVFPNDVHGIERP 752
D + L+ G E ++I +P H IE P
Sbjct: 325 QDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEPP 366
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 88.6 bits (219), Expect = 9e-19
Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 34/247 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
++V+ GG S + Y++L+V+ G G+ Q L +V ++
Sbjct: 160 DTLIVVGGGDTSRE-DLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGLHFEVDARAA 215
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---- 653
I ++D A K+ + G S GG+ T + + A A P+ ++
Sbjct: 216 ------ISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPIYDVAEVF 268
Query: 654 -ALMVGTTDIPDWCYVESYGSKGKDS-------------FTESPSVEDLTRFHSKSPISH 699
P + F + + + ++ I
Sbjct: 269 RISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVD 328
Query: 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESF 759
+K+ P++FL+GA + + +++G++ + F ++ Q +
Sbjct: 329 YNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGIDVTLRKFSSESGADAHCQVN---- 384
Query: 760 LNIGLWF 766
N L
Sbjct: 385 -NFRLMH 390
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-18
Identities = 71/351 (20%), Positives = 130/351 (37%), Gaps = 58/351 (16%)
Query: 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 476
+++ G+ +TP L DG II + SP VP+ V KG+ +
Sbjct: 386 CIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSP-TVPRKVT---VTNIGKGSHTL 440
Query: 477 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCS 535
L +P + + + + P F + KK
Sbjct: 441 LEAKNPDTGYA------MPEIRTGTIMAADGQTPLY---YKLTMPLH--FDPA--KKY-- 485
Query: 536 CDPLIVVLHGGPHSVS-LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590
P+IV ++GGPH+ ++ S+ +++ GY++ V+ RGS G Q +
Sbjct: 486 --PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650
++G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP- 602
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPISHISKVKT 705
+ DW Y + E +P E+ + + + + +K
Sbjct: 603 -----------VIDWNR---Y-----AIMYGERYFDAPQ-ENPEGYDAANLLKRAGDLKG 642
Query: 706 PTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754
+L GA D V + L + A + V+P+ H + P
Sbjct: 643 R--LMLIHGAIDPVVVWQHSLLFLDACVKARTYPDYYVYPSHEHNVMGPDR 691
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-18
Identities = 47/242 (19%), Positives = 101/242 (41%), Gaps = 30/242 (12%)
Query: 538 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++ ++ GP S + + + A S+ + + RGS G++ + ++ ++G+
Sbjct: 503 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 562
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+V D + A MG + ++ + G S+GG++T+ ++G F A P
Sbjct: 563 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP----- 617
Query: 655 LMVGTTDIPDW-----CYVESY-GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ W Y E Y G + ++L + + + +S K
Sbjct: 618 -------VSRWEYYDSVYTERYMGLPTPE--------DNLDHYRNSTVMSRAENFKQVEY 662
Query: 709 FLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767
L+ G D V Q ++AL + GV+ + + + ++ HGI + + ++ + K
Sbjct: 663 LLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIK 722
Query: 768 KY 769
+
Sbjct: 723 QC 724
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 106/687 (15%), Positives = 215/687 (31%), Gaps = 136/687 (19%)
Query: 100 GASAVVPSPSGSKL-------LVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 152
+ SP GSKL + ++ + P Q + +E + + VY +
Sbjct: 111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-----TFNGRENKIFNGIPDWVYEE 165
Query: 153 GWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 209
+ W+ + +AY + P + S G +
Sbjct: 166 EMLATKYALWWSPNGKFLAYAEFNDTD-IPVIAY-SYYGDEQYPRTINIP---------- 213
Query: 210 ETY--AGKRQP--SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265
Y AG + P +F+I+ + +V + Y ++ W +
Sbjct: 214 --YPKAGAKNPVVRIFIIDTTYP---------AYVGPQEVPVPAMIASSDYYFSWLTWVT 262
Query: 266 ETRKLGIKYCYNRP---CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 321
+ ++ +++ R L + +E E +
Sbjct: 263 DE-RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVST---- 316
Query: 322 PRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380
P FS D + S K + T+G + +++ V Q +
Sbjct: 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTV-ENAIQITSGKWE----AINIFRVTQDSLF 371
Query: 381 DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 431
+Y SI S P T L
Sbjct: 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK-----------------------E 408
Query: 432 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491
+ + + V P +P D L + + + ++
Sbjct: 409 RCQYYTASFSDYAKYYALVCYGP-GIPISTL---HDGRTDQEIKILEENKELENALKNIQ 464
Query: 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 551
+ I K+ V ++ + + + PL++ ++GGP S S
Sbjct: 465 L----PKEEIKKLEVDEITLWY---------KMILPPQFDRSKKY-PLLIQVYGGPCSQS 510
Query: 552 -LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 608
S ++ + S G + +V+ RG+ G++ L ++ K+G +V D +TA+ I
Sbjct: 511 VRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFI 570
Query: 609 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668
+MG + ++ + G S+GG++++ + F A P + W Y
Sbjct: 571 EMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP------------VSSWEYY 618
Query: 669 ESYGSKGKDSFTE----SPSVED-LTRFHSKSPISHISKVKTPTIFLL-GAQDLRVPVSN 722
S +TE P+ +D L + + + ++ + L+ G D V N
Sbjct: 619 ASV-------YTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQN 671
Query: 723 GLQYARALREKGVETKVIVFPNDVHGI 749
Q A+AL V+ + + + + HG+
Sbjct: 672 SAQIAKALVNAQVDFQAMWYSDQNHGL 698
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-17
Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 27/219 (12%)
Query: 538 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P++++ GG + S + + + G +++NY+ L V
Sbjct: 36 PIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQ---------LIVGDQSVYPWA 86
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652
+ + I + + ++ + G S GG + G A +
Sbjct: 87 LQQLGATIDWITTQASAHHV-DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD--- 142
Query: 653 LALMVGTTDIPDWCYVESYG-SKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIF 709
+ Y F + + + ++ + ++ P
Sbjct: 143 -----HYQGQHAAI-ILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFV 196
Query: 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
A D VP N L+Y +A+ + V T +F + +HG
Sbjct: 197 WQTATDESVPPINSLKYVQAMLQHQVATAYHLFGSGIHG 235
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 39/216 (18%), Positives = 72/216 (33%), Gaps = 32/216 (14%)
Query: 538 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P I++ GG + +S + GY +L++NY + L Q+
Sbjct: 44 PAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYT--VMNKGTNYNFLS-----QN 96
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 652
+ +V + + + NP +V ++G S GG L
Sbjct: 97 LEEVQAVFSLIHQNHKEWQI-NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKG-------- 147
Query: 653 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 712
+ L T D + +E+++ + + ++ PT
Sbjct: 148 VILCYPVTSFTFGWP--------SDLSHFNFEIENISEY---NISEKVTSSTPPTFIWHT 196
Query: 713 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
A D VP+ N L+Y L + V + F + HG
Sbjct: 197 ADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPHG 232
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 9e-17
Identities = 74/375 (19%), Positives = 142/375 (37%), Gaps = 64/375 (17%)
Query: 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 476
+V + G+ R++ A S S + + S+ P + +AN +
Sbjct: 410 AVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNN-STPPQIE---LFRANGEKIAT 464
Query: 477 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGA-------QKPFEAIFVSSS 529
L + + ++ + PV+ + G KP F +
Sbjct: 465 LVEN-------DLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG--FDPA- 514
Query: 530 HKKDCSCDPLIVVLHGGPHS--V----SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583
K+ P+ V ++GGP S V +L+ GY + ++ RG+ G +
Sbjct: 515 -KRY----PVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
+L GK G+ +V D L + + +P+++ V G S+GG++T L+ +A D +
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPIS 698
A P + DW Y DS +TE P+ + + ++
Sbjct: 630 GVAGAP------------VTDWGL---Y-----DSHYTERYMDLPA-RNDAGYREARVLT 668
Query: 699 HISKVKTPTIFLL--GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
HI +++P LL G D V +N AL+++G +++ +P HG+ +
Sbjct: 669 HIEGLRSP--LLLIHGMADDNVLFTNSTSLMSALQKRGQPFELMTYPGAKHGLSGADALH 726
Query: 757 ESFLNIGLWFKKYCK 771
+ + + K
Sbjct: 727 R-YRVAEAFLGRCLK 740
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 81.7 bits (201), Expect = 1e-16
Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 53/222 (23%)
Query: 538 PLIVVLHGGPHSVS----------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 587
PL+V LHG + + + +L + +
Sbjct: 175 PLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDR 234
Query: 588 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 647
+ + V+ I ++D + +++ + G S GG+ T I + P+ F AA
Sbjct: 235 ENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIP- 293
Query: 648 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
+ G D+ I P
Sbjct: 294 --------ICGGGDVSKV-----------------------------ERIKD-----IPI 311
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
D VPV N + L E G + + +
Sbjct: 312 WVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEK 353
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 33/214 (15%), Positives = 64/214 (29%), Gaps = 23/214 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +++L G + + + G + + G GE K + D
Sbjct: 153 PAVIMLGGLESTKE--ESFQMENLVLDRGMATATFDGPGQ---GE----MFEYKRIAGDY 203
Query: 598 NDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+A+ D + + + V+G S GG P A + +L
Sbjct: 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYW 262
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQD 715
T + + + E H+ +S++ PT L G D
Sbjct: 263 DLETPLTKESWKYVSKVDTLE--------EARLHVHAALETRDVLSQIACPTYILHGVHD 314
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
VP+S + + + ++V + H
Sbjct: 315 -EVPLSFVDTVLELVPAEHLN--LVVEKDGDHCC 345
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-16
Identities = 42/244 (17%), Positives = 93/244 (38%), Gaps = 32/244 (13%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 556
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPL 650
+ D + A+ ++ + ++V V G +GG+L+T+++ + F +A +P
Sbjct: 557 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP- 615
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTP 706
I D+ S F+E D + +S ++
Sbjct: 616 -----------ITDFKLYASA-------FSERYLGLHG-LDNRAYEMTKVAHRVSALEEQ 656
Query: 707 TIFLL-GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765
++ D ++ + + L + ++P++ H + +I +
Sbjct: 657 QFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINF 716
Query: 766 FKKY 769
F +
Sbjct: 717 FVEC 720
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 77.9 bits (191), Expect = 3e-16
Identities = 32/222 (14%), Positives = 61/222 (27%), Gaps = 31/222 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLGFGEEALQSLPGKVGS 594
L++ LHG S L + G+ LL + G + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 595 QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+ V + + + GGS G F+ L+ + A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA-------- 134
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLG 712
+G+ + + + P + P + L G
Sbjct: 135 --FIGSGFPMKL------------PQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHG 180
Query: 713 AQDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERP 752
++D VP++ + ALR E ++ V H +
Sbjct: 181 SRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTPL 222
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 4e-16
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 33/243 (13%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
P I+++ GG + ++ + GY + Y L + +G
Sbjct: 51 PAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYT---------LLTDQQPLGLAP 101
Query: 597 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC- 651
V D+ A+ H + + +P ++T G S GG + + P
Sbjct: 102 VLDLGRAVNLLRQHAAEWHI-DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
Query: 652 --NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 709
N ++ P + + T +P+ +L + H++ PT
Sbjct: 161 KPNNVVLG----YPVISPLLGFPKDDATLATWTPTPNEL------AADQHVNSDNQPTFI 210
Query: 710 LLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI-----ERPQSDFESFLNIGL 764
A D VP +N L YA AL + ++ VF + HG+ + + ++
Sbjct: 211 WTTADDPIVPATNTLAYATALATAKIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAH 270
Query: 765 WFK 767
W
Sbjct: 271 WLT 273
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 31/245 (12%), Positives = 69/245 (28%), Gaps = 37/245 (15%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS---------LGFGEEALQSL 588
PL +++HG L+ +G + L + G +
Sbjct: 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKW----- 82
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648
+ ++L +D+ + + + G S GG D A +
Sbjct: 83 --------LTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP----SVEDLTRFHSKSPISHISKVK 704
P + + T ++ + D++ V + K
Sbjct: 133 PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTI---RVEDFVDKYT 189
Query: 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764
P + + G QD VP + +++ + K++ P D H + +
Sbjct: 190 KPVLIVHGDQDEAVPYEASVAFSKQYKNC----KLVTIPGDTHCYDHHLELVTE--AVKE 243
Query: 765 WFKKY 769
+ +
Sbjct: 244 FMLEQ 248
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
+V++ G S+ + L+ ++L V+ G + L ++D +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPL-----TEDYSR 246
Query: 600 VLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658
+ A ++ + + + +V ++G GG L +K A +
Sbjct: 247 LHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASP 306
Query: 659 TT--DIPDWCYVESYGSK-GKDSFTESPSVEDLTRF-HSKSPISHISKVKTPTIFLLGAQ 714
+P Y++ S+ GK + + K K P + +
Sbjct: 307 QKLQQMPKM-YLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D P S+ A + + +S W +
Sbjct: 366 DPVSPYSDNQMVAFFSTYG---KAKKISSKTITQGYE-----QSLDLAIKWLED 411
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 6e-14
Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 537 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
++ +HGG + + ++ + + YR S P
Sbjct: 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS-----------P 89
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------F 641
+++ D ++ I ++ + + +VG S G ++ D
Sbjct: 90 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 147
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-- 699
+ + L+ G + + + Y D FT + + + +
Sbjct: 148 QMLGLLQIVKRVFLLDGIYSLKEL--LIEYPEY--DCFTRLAFPDGIQMYEEEPSRVMPY 203
Query: 700 ----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+S+ + D + + L++ + K+ + +H
Sbjct: 204 VKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 256
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 28/200 (14%), Positives = 58/200 (29%), Gaps = 28/200 (14%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
L V +HGG + SS+S S G+++ + +Y P S+
Sbjct: 64 GLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC-----------PEVRISEI 112
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ A+ + + G S GG L ++ A + N+ +
Sbjct: 113 TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARMLDPEVLP---EAVGARIRNVVPI 166
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
+D+ + D ++SP+ ++ +G +
Sbjct: 167 SPLSDLRPL----------LRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
Query: 717 RVPVSNGLQYARALREKGVE 736
+ + A V
Sbjct: 217 PAFLDQAIWLVEAWDADHVI 236
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 29/233 (12%), Positives = 60/233 (25%), Gaps = 24/233 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
I++ G + + ++ +LS+ G+ + + +G S G +
Sbjct: 36 NTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVG------LS-SGSIDEFTM 86
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCN 652
+ N + T + + ++ S + +I F + A L +
Sbjct: 87 TTGKNSLCTVYHWLQT---KGTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRD 143
Query: 653 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHS---KSPISHISKVKTPT 707
D E + V D H S + ++ P
Sbjct: 144 TLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 203
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFL 760
I D V +R K+ H + +F
Sbjct: 204 IAFTANNDDWVKQEEVYDMLAHIRTG--HCKLYSLLGSSHDLGENLVVLRNFY 254
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 2e-12
Identities = 40/235 (17%), Positives = 70/235 (29%), Gaps = 48/235 (20%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++ HG S S ++ +A L G + L+++ +
Sbjct: 36 GIVLFAHGSGSS-RYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ ++ A D + KV G S GG + P+ A +R +LA
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA-- 152
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
S + VK PT+ ++G DL
Sbjct: 153 ----------------------------------------PSALPHVKAPTLLIVGGYDL 172
Query: 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
V N AL + ++++ P H E P + WF Y +
Sbjct: 173 PVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPGALTAVAQLASEWFMHYLR 223
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-12
Identities = 44/235 (18%), Positives = 71/235 (30%), Gaps = 32/235 (13%)
Query: 538 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
PL V +HGG + +S + L GY + +++Y P Q
Sbjct: 83 PLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLC-----------PQVTLEQL 131
Query: 597 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ ++ + D S +T G G L ++ + A + L
Sbjct: 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQIL--MRPNVITAQRSKMVWALIF 189
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-----PTIFL 710
+ G D+ + +ES K E S SP+ T +
Sbjct: 190 LCGVYDLRELSNLESVNPKNILGLNER-------NIESVSPMLWEYTDVTVWNSTKIYVV 242
Query: 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH-----GIERPQSDFESFL 760
D + YA LR+KG + +F H SD FL
Sbjct: 243 AAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAIDDSDVSRFL 297
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 6e-11
Identities = 42/238 (17%), Positives = 79/238 (33%), Gaps = 38/238 (15%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--EEALQSLPGKVGS 594
D +++L G S + + L L+ ++++ + RG +G + P
Sbjct: 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPPDRDFPADFFE 78
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNP 649
+D D + + + KV+++G S GG + P A A
Sbjct: 79 RDAKDAVDLMKA---LKFK---KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 650 LCNLALMVGTTDIPDWC------YVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHI-- 700
+ + G D+ W Y G D F + D R P +I
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALY---GYDYFARTCEKWVDGIRQFKHLPDGNICR 189
Query: 701 ---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERPQ 753
+V+ P + + G +D VP + + + KG + + P H +
Sbjct: 190 HLLPRVQCPALIVHGEKDPLVPRFHADFIHKHV--KGSR--LHLMPEGKHNLHLRFAD 243
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} Length = 275 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 6e-11
Identities = 36/257 (14%), Positives = 68/257 (26%), Gaps = 46/257 (17%)
Query: 538 PLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+IV +HGG + S + + Y L+ ++YR E SL
Sbjct: 30 GVIVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYR----LLPEV--SLDC-----I 78
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA------AARNPL 650
+ DV + D + + + G S G +L+ + V P
Sbjct: 79 IEDVYASFDAIQS--QYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 651 CNLALMVG--------------------TTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690
D ++ ++G + ++ D T
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 691 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-I 749
+ K P D VPV + + + + + H
Sbjct: 197 -SKYNIAPDELKTLPPVFIAHCNGDYDVPV----EESEHIMNHVPHSTFERVNKNEHDFD 251
Query: 750 ERPQSDFESFLNIGLWF 766
RP + + + F
Sbjct: 252 RRPNDEAITIYRKVVDF 268
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 8e-10
Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 25/238 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG-FGEEALQSLPGKVG 593
+ ++ HG + + S + L + + ++ G S G F +
Sbjct: 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV-------- 98
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
++ D +++V + + +VG + GG + + L G PD P L
Sbjct: 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
Query: 654 ALMVGTTDIPDWCYVESY--GSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFL 710
+ Y + T + + ++ P +
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLP---IYEVSAQFTKPVCLI 213
Query: 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
G D V + +Y + + + + H + + +
Sbjct: 214 HGTDDTVVSPNASKKYDQIYQNS----TLHLIEGADHCFSDSYQK-NAVNLTTDFLQN 266
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} Length = 274 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-09
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 48/241 (19%)
Query: 538 PLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
+V LHGG + S + L L S GY++L ++Y L +
Sbjct: 28 NYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYL--LAP--NT--KID-----H 76
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + + + + + G S GG+L L Q + L
Sbjct: 77 ILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQF------LVN 129
Query: 656 MVGTTDI-----PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
G TD+ P ++ +K + ++ V D + + F
Sbjct: 130 FYGYTDLEFIKEPRKLLKQAISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFY 189
Query: 711 LGAQDLRVPVSN-----------------------GLQYARALREKGVETKVIVFPNDVH 747
++ +Y++ + E+ H
Sbjct: 190 GLPENGDWSAYALSDETLKTFPPCFSTASSSDEEVPFRYSKKIGRTIPESTFKAVYYLEH 249
Query: 748 G 748
Sbjct: 250 D 250
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 44/240 (18%), Positives = 85/240 (35%), Gaps = 34/240 (14%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
++++HG S+ + LA + GY++ + +G G E + + D
Sbjct: 43 VLLVHGFTGTPHSM----RPLAEAYAKAGYTVCLPRLKGH-GTHYEDM----ERTTFHDW 93
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V V + + V G S GG LT +L PD + A+
Sbjct: 94 VASVEEGYGWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIA 149
Query: 657 VGTTDIPDWC-YVESYGSKGKDSFTE--------SPSVEDLTRFHSKSPISHISKVKTPT 707
G T + Y++S GS K+ + + S+ L R +++ + + ++ P
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTK-AKLDRIVCPA 208
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 761
+ + +D VP N + + E ++ N H ++P F
Sbjct: 209 LIFVSDEDHVVPPGNADIIFQGISSTEKE--IVRLRNSYHVATLDYDQPMIIERSLEFFA 266
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 39/236 (16%), Positives = 70/236 (29%), Gaps = 28/236 (11%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 596
+V+LH + +A L GY + + + G + L K
Sbjct: 25 VVLLHAYTGSPNDM----NFMARALQRSGYGVYVPLFSGHGTVEPLDIL----TKGNPDI 76
Query: 597 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ A+ H+ +KV V G S GG + P +P+
Sbjct: 77 WWAESSAAVAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKH 132
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ + Y+ K +S + + +F + + + ++ VK PT
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQF-ATTVAADLNLVKQPTFIGQ 191
Query: 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ--SDFESFLN 761
QD V Q AL + + H I D +F+
Sbjct: 192 AGQDELVDGRLAYQLRDALI-NAARVDFHWYDDAKHVITVNSAHHALEEDVIAFMQ 246
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} Length = 241 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 52/222 (23%)
Query: 538 PLIVVLH---GGPHSVSLSSYSKSLA-FLSSVGYSLLIVN--YRG----SLGFGEEALQS 587
P+++V+ G + + + L L+ GY + +R +
Sbjct: 33 PIVIVVQEIFG------VHEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKE 86
Query: 588 LPGKVGSQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 646
L KV V D+ G + ++ + G GG +T P + AA
Sbjct: 87 LVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ--LKAAV 143
Query: 647 RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP 706
+ YG + SP K P+ + P
Sbjct: 144 -------------------AW---YGKLVGEKSLNSP----------KHPVDIAVDLNAP 171
Query: 707 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+ L GA+D +P +ALR +++V+P H
Sbjct: 172 VLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHA 213
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 32/251 (12%), Positives = 86/251 (34%), Gaps = 48/251 (19%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE---EALQSLPGKVG 593
++ +HG +L + + +L Y+ ++++ +G GE + ++
Sbjct: 16 PNTLLFVHGSG--CNLKIFGELEKYLE--DYNCILLDLKG---HGESKGQCPSTV----- 63
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAAR- 647
+++V I + + +T++G S GG + + + ++ AR
Sbjct: 64 YGYIDNVANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARF 121
Query: 648 -------------NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694
N L N L+ I + + + + KD + DL
Sbjct: 122 DKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDI---MINDLIACKLI 178
Query: 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG--IERP 752
+ ++ + P ++ +L V + + +++ +F H +
Sbjct: 179 DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVVNA 234
Query: 753 Q---SDFESFL 760
+ + ++F+
Sbjct: 235 KGVAEEIKNFI 245
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 174/493 (35%)
Query: 352 HRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDC-----FP-GLYSSS----ILSNPWLS 398
H +D+ T + + D++ V + A DC P + S I+ +
Sbjct: 5 HHMDFETGEHQYQYK---DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 458
G L ++ + ++ V E+LRI N+ + L++ + + P
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFV--EEVLRI-----NYKF-LMS-------PIKTEQRQ-P 105
Query: 459 QVKYGYFVDKANKGTWSWLNVSSP--ISRCPEKVKSLLSSRQFSIMKI-PVKGVSANLTK 515
+ ++++ ++ ++ V + +SR + L RQ +++++ P K V +
Sbjct: 106 SMMTRMYIEQRDR-LYNDNQVFAKYNVSR-LQPYLKL---RQ-ALLELRPAKNVLIDGVL 159
Query: 516 GAQKPFEAIFVSSSHK--------------KDCSCDPLIV------VLHGGPHSVSLSSY 555
G+ K + A+ V S+K K+C+ ++ + P+ S S +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 556 SKSLA------------FLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVND-- 599
S ++ L S Y LL++ +V +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------------------NVQNAK 257
Query: 600 VLTAIDH------------VIDMGLANPSKVTVVGGSHGGFLTTHL-------IGQAPDK 640
A + V D A + + + + P
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 641 F-VAAAARNPLCNLAL-MVGTT--DIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695
NP L ++ + D W + + ES S+ L
Sbjct: 318 LPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLE------ 367
Query: 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
P + R + L VFP H I P
Sbjct: 368 ----------PA-------EYR-------KMFDRL---------SVFPPSAH-I--P--- 388
Query: 756 FESFLNIGLWFKK 768
L++ +WF
Sbjct: 389 -TILLSL-IWFDV 399
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 91/658 (13%), Positives = 171/658 (25%), Gaps = 236/658 (35%)
Query: 19 TAEEEYASLSKLLQDFTN--ISSIDKAWTFNSGNGNGTQAMFS-------ISQPNLLANK 69
T E +Y +L F + + + D + +++ S I + A
Sbjct: 11 TGEHQY-QYKDILSVFEDAFVDNFDCKDVQDM-----PKSILSKEEIDHIIMSKD--AVS 62
Query: 70 RKKFMLSTVISKENENSV------------TFQWAPFPVEMTGASAVVPSPSGSKLLVVR 117
+ T++SK E V F +P E PS + R
Sbjct: 63 GTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-----PSMMTRMYIEQR 116
Query: 118 NPENESPIQFELWSQSQLEKEFHVPQ--------------------TVHG---------- 147
+ L++ +Q+ +++V + + G
Sbjct: 117 DR---------LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 148 -SVYADGWFE-----GISW------NSDETLIA------------YVAEEPSPSKPTFSL 183
V + I W NS ET++ + + S +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 184 GSTKGGSSD-------KDC-----NSWKGQGDWE-------------------------- 205
S + ++C N + W
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 206 -----EDWGETYAGKRQPSLF--VININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH- 255
+ T SL ++ ++ + + P+ LS+ + + +GL
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---IAESIRDGLAT 343
Query: 256 -QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV----V 310
V T I+ N L +E ++ + L V
Sbjct: 344 WDNWKHVNCDKLTTI--IESSLN----------VLEPAEYRKM------FDRLSVFPPSA 385
Query: 311 NLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDW---PTNGNFSSL 365
++ + S + + L S V+ +T S+ I N +L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 366 EK-IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG- 423
+ IVD + + + S L P+L D S I G
Sbjct: 446 HRSIVDHYNIPKT---------FDSDDLIPPYL-DQ--YFYSHI--------------GH 479
Query: 424 ELLRITPAES---------NFSW--SLLTLDGDNIIAVSSSPVDVPQVK-Y-GYFVDKAN 470
L I E +F + + D A S + Q+K Y Y D N
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--N 537
Query: 471 KGTWSWL---------NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQK 519
+ L + + LL + ++M + + K Q+
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKY--TDLL---RIALMA-EDEAIFEEAHKQVQR 589
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 35/249 (14%), Positives = 65/249 (26%), Gaps = 61/249 (24%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-----YRGSLGFGEEALQSL---- 588
L+++ HGG + + L G S + ++ R S+ G E +
Sbjct: 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDA 116
Query: 589 ------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 642
G + + D A+D + P G S G + + +
Sbjct: 117 FPRMWHEGGGTAAVIADWAAALDFI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKR--I 172
Query: 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 702
A G G + V +
Sbjct: 173 KVAL------------------------LGLMGVEGVNGEDLVRLAPQ------------ 196
Query: 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNI 762
V P +LL D V + +GL+ L + + V P + + +
Sbjct: 197 VTCPVRYLLQWDDELVSLQSGLELFGKL--GTKQKTLHVNPGKHSAVPTWEMFAGTV--- 251
Query: 763 GLWFKKYCK 771
+ + K
Sbjct: 252 -DYLDQRLK 259
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 47/274 (17%), Positives = 104/274 (37%), Gaps = 73/274 (26%)
Query: 537 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGS 594
D +V+LHG GP + +++S+++ L GY +++++ G +G+ +++ + +
Sbjct: 36 DETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG---WGKSDSVVNSGSRSDL 92
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ + +D + + +K+ ++G S GG + + P++ V L
Sbjct: 93 N-ARILKSVVDQ---LDI---AKIHLLGNSMGGHSSVAFTLKWPER-VGK--------LV 136
Query: 655 LM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS---------- 698
LM GT + + + + G K + P++E+L S ++
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196
Query: 699 ---------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731
++++K T+ + G D VP+ GL+ +
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGI- 255
Query: 732 EKGVETKVIVFPNDVHG--IERPQ---SDFESFL 760
G E + +F + H E +FL
Sbjct: 256 -AGSE--LHIFRDCGHWAQWEHADAFNQLVLNFL 286
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} Length = 391 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 5e-06
Identities = 32/282 (11%), Positives = 76/282 (26%), Gaps = 38/282 (13%)
Query: 509 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 563
+ + + + + S K+ +P I ++ S + ++
Sbjct: 100 STFLVLKPEHLKGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMV--- 156
Query: 564 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 607
GY + V+ + + + ++G + ++ +
Sbjct: 157 KEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWM 216
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
++ + G S G ++G A + LC PD
Sbjct: 217 KAQSYIRKDRIVISGFSLGTE-PMMVLGVLDKDIYAFVYNDFLCQTQERAVVMTKPDKEN 275
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726
+ + + + + +P P IF G D + +Q
Sbjct: 276 RRPFPNSIRHLIPGYWRYFNFPDVVASLAP--------RPIIFTEGGLDRDFRL---VQS 324
Query: 727 ARALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFK 767
A A K + +P R + + L+ +F+
Sbjct: 325 AYAASGKPENAEFHHYPKFADKAVRKDVEHLDEGLDSKTYFE 366
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A Length = 247 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-06
Identities = 47/250 (18%), Positives = 79/250 (31%), Gaps = 53/250 (21%)
Query: 540 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
+++LHG +S + + L FL S GY+ Y+G G E L G D
Sbjct: 19 VLLLHGFTGNSADV----RMLGRFLESKGYTCHAPIYKGH-GVPPEELV----HTGPDDW 69
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
DV+ + + + G K+ V G S GG + L P+ + M
Sbjct: 70 WQDVMNGYEFLKNKG---YEKIAVAGLSLGGVFSLKL-----------GYTVPIEGIVTM 115
Query: 657 VGTTDIPDW--------CYVESYGSK-GKDSFTESPSVEDLTRFHSKSPIS--------- 698
I Y Y + GK +E + K+ +
Sbjct: 116 CAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVR 175
Query: 699 -HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI----ERPQ 753
H+ + PT + D + + + + + + H I E+ Q
Sbjct: 176 DHLDLIYAPTFVVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVITLDQEKDQ 233
Query: 754 --SDFESFLN 761
D +FL
Sbjct: 234 LHEDIYAFLE 243
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 43/265 (16%), Positives = 82/265 (30%), Gaps = 50/265 (18%)
Query: 530 HKKDCSCDPLIVVLHG------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG- 579
P + L G G ++ + +S+G + +Y G S G
Sbjct: 30 RAPAQDERPTCIWLGGYRSDMTGTKALEMD------DLAASLGVGAIRFDYSGHGASGGA 83
Query: 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639
F + + S+ + + L +DH P K +VG S GG++ LI +
Sbjct: 84 FRDGTI--------SRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKA 129
Query: 640 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH------- 692
+ + L+ D G + + E+ E+++ +
Sbjct: 130 ---RHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFT 186
Query: 693 --------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744
+ ++ + P L G D VP + L+ L V + + +
Sbjct: 187 RALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPADDV--VLTLVRD 244
Query: 745 DVHGIERPQSDFESFLNIGLWFKKY 769
H + RPQ I +
Sbjct: 245 GDHRLSRPQDIDRMRNAIRAMIEPR 269
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A Length = 322 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 59/237 (24%)
Query: 537 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLG----FGEEALQSLPG 590
I+ LHGG + + S++++ + +S + L+++YR L F A+
Sbjct: 80 GKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYR--LAPEHPFPA-AV----- 131
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAA 646
D + A ++D G P +++ G S GG L ++ A D+ +A
Sbjct: 132 -------EDGVAAYRWLLDQGFK-PQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIP 183
Query: 647 RNPLCNLAL-------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRFH 692
+P ++ MV I + Y SP+ +L
Sbjct: 184 ISPWADMTCTNDSFKTRAEADPMVAPGGI-NK-MAARYLNGADAKHPYASPNFANLKGL- 240
Query: 693 SKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P P + +G + L + ++ + GV++ + ++ + +H
Sbjct: 241 ---P---------PLLIHVGRDEVLL---DDSIKLDAKAKADGVKSTLEIWDDMIHV 282
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 1e-05
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 538 PLIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P IV+ S Y++++A G+ L + GE P V S
Sbjct: 97 PAIVIGGPFGAVKEQSSGLYAQTMA---ERGFVTLAFDPSY---TGE--SGGQPRNVASP 148
Query: 596 D--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
D D A+D + + N ++ V+G G + + + A DK V A + + ++
Sbjct: 149 DINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAV--AVDKRVKAVVTSTMYDM 206
Query: 654 ALMV 657
++
Sbjct: 207 TRVM 210
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 2e-05
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
I + G ++ + SS + ++S G+ ++ ++ +L + ++ +
Sbjct: 97 GAIAISPG--YTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------ARQL 145
Query: 598 N---DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
N D + + S++ V+G S GG T + AA P
Sbjct: 146 NAALDYMLTDASSAVRNRIDASRLAVMGHSMGGG-GTLRLASQRPDLKAAIPLTP 199
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A Length = 322 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 61/238 (25%)
Query: 537 DPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL------ 588
I+ HGG + S S++ L+ +L ++YR L
Sbjct: 80 AAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYR------------LAPENPF 127
Query: 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAA 644
P V +D + A ++ + ++ + G S GG LTT + +A +
Sbjct: 128 PAAV-----DDCVAAYRALLKTAGS-ADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGL 181
Query: 645 AARNPLCNLAL------------MVGTTDIPDWCYVESY-GSKGKDSFTESPSVEDLTRF 691
+P +L L + D E Y G + + + SP DL+
Sbjct: 182 VMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGEM-SELYVGGEDRKNPLISPVYADLSGL 240
Query: 692 HSKSPISHISKVKTPTIFLLGAQD-LRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
P + +G+++ L S+ A GV ++ ++P+ H
Sbjct: 241 ----P---------EMLIHVGSEEALL---SDSTTLAERAGAAGVSVELKIWPDMPHV 282
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A Length = 291 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 46/256 (17%), Positives = 88/256 (34%), Gaps = 73/256 (28%)
Query: 537 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
D +V+LHG GP + S +++S+++A L+ + +L V+ G+G S Q
Sbjct: 36 DQTVVLLHGGGPGAASWTNFSRNIAVLAR-HFHVLAVDQ---PGYG----HSDKRAEHGQ 87
Query: 596 DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
A+ + D +GL +V +VG + GG P + L
Sbjct: 88 FNRYAAMALKGLFDQLGL---GRVPLVGNALGGGTAVRFALDYPAR-AGR--------LV 135
Query: 655 LM--VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS--------- 698
LM G + + G K F+ +P+ E+L + K+ I+
Sbjct: 136 LMGPGGLSINLFA-PDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKNLITPELVDQRFA 194
Query: 699 ------------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728
+ +++ P + + G +D P+ L +
Sbjct: 195 LASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVNPLDGALVALK 254
Query: 729 ALREKGVETKVIVFPN 744
+ + + VF
Sbjct: 255 TI--PRAQ--LHVFGQ 266
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* Length = 273 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 1e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++HG H S+ K L + G+ + ++ S G + + +
Sbjct: 5 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAAS---GTDLRKIEELRTLYDYT 59
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651
++ ++ L+ KV +VG S GG + + P K AA
Sbjct: 60 LPLMELMES-----LSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 108
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A Length = 286 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 73/273 (26%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++LHG GP + S+Y +++ GY +++ + G F + + + G +
Sbjct: 34 ETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVN 90
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V +D + + + +VG + GG + + PD+ + L LM
Sbjct: 91 ARAVKGLMDA---LDI---DRAHLVGNAMGGATALNFALEYPDR-IGK--------LILM 135
Query: 657 --VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS----------- 698
G G K PS E L + + +S I+
Sbjct: 136 GPGGLGPSMFAPMPME-GIKLLFKLYAEPSYETLKQMLQVFLYDQSLITEELLQGRWEAI 194
Query: 699 --------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE 732
+ ++K T G D VP+ +GL+ +
Sbjct: 195 QRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNI-- 252
Query: 733 KGVETKVIVFPNDVHG--IERPQ---SDFESFL 760
+ VF E FL
Sbjct: 253 DDAR--LHVFSKCGAWAQWEHADEFNRLVIDFL 283
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} Length = 176 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 23/195 (11%), Positives = 52/195 (26%), Gaps = 54/195 (27%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
++ HG S + +LA +G++ ++ G
Sbjct: 5 GHCILAHGF-ESGPDALKVTALAEVAERLGWTHERPDFT---DLDARRDLGQLGD-VRGR 59
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
+ +L + V + G S G ++ + + + P L LM
Sbjct: 60 LQRLLEIARAATE-----KGPVVLAGSSLGSYIAAQV-----------SLQVPTRALFLM 103
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
V T + +++ P + D
Sbjct: 104 VPPTKMGPLPALDAAA--------------------------------VPISIVHAWHDE 131
Query: 717 RVPVSNGLQYARALR 731
+P ++ + +A+A
Sbjct: 132 LIPAADVIAWAQARS 146
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 36/284 (12%), Positives = 78/284 (27%), Gaps = 73/284 (25%)
Query: 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 111
G + +++ NL NK + +T++ + +N+ + A+ SP G
Sbjct: 23 KGELVAYVLTKANLKDNKYE----NTIVIENLKNNARRF-------IENATMPRISPDGK 71
Query: 112 KLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171
K+ +R E + + +W ++ + WN D + V
Sbjct: 72 KIAFMRANEEKKVSE--IWVADLETLS-SKKILEAKNI------RSLEWNEDSRKLLIVG 122
Query: 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ 231
+ D+D W + + + ++ + S EV
Sbjct: 123 FKRRE---------------DEDFIFEDDVPAW--FDDLGFFDGEKTTFWIFDTESEEVI 165
Query: 232 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291
+ +W K+ + + Y +Y
Sbjct: 166 E---EFEKPRFSSGIWHR------------------DKIVVNVPHREIIPQYFKFWDIYI 204
Query: 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335
E + E + E +S F DG+ ++
Sbjct: 205 WEDGKEE------------KMFEKVS---FYAVDSDGERILLYG 233
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 538 PLIVVLHG-------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590
+I HG P + +Y A+ +S GY ++ +Y G +
Sbjct: 75 GIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA 134
Query: 591 KVGSQDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAA 644
+ + D+L A + + K+ + G S GGF T + A
Sbjct: 135 ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194
Query: 645 AARNPLCNLALMVGTTDIPDWCYVESY 671
A + + + +Y
Sbjct: 195 APGSAPYGWEETMHFVMLEPGPRATAY 221
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A Length = 282 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 44/261 (16%), Positives = 87/261 (33%), Gaps = 52/261 (19%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGSQ 595
++++HG GP + +++ ++ LS Y ++ + G FG + ++ S
Sbjct: 26 QPVILIHGSGPGVSAYANWRLTIPALSK-FYRVIAPDMVG---FGFTDRPENYNYSKDSW 81
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-----VAAAARNPL 650
V+ ++ +D + + K +VG + GG L + ++ + AA
Sbjct: 82 -VDHIIGIMDA---LEI---EKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFD 134
Query: 651 CNLALMVGTTDIPDW-----------------------CYVESYGSKG-KDSFTE-SPSV 685
L P E+ G ++SF+ P
Sbjct: 135 VTEGLNAVWGYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEP 194
Query: 686 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745
S I + T+ + G +D VP+S+ L+ + + + VF
Sbjct: 195 RQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI--DRAQ--LHVFGRC 250
Query: 746 VHG--IERPQ---SDFESFLN 761
H IE+ F N
Sbjct: 251 GHWTQIEQTDRFNRLVVEFFN 271
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* Length = 264 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++HGG + K L S G+ + V+ + G +
Sbjct: 11 KHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRLDEIHTFRDYS 65
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAA 646
++ + + KV ++G S GG + P+K F++A
Sbjct: 66 EPLMEVMASIPPDE-----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 31/144 (21%), Positives = 57/144 (39%), Gaps = 22/144 (15%)
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP-------L 650
+D + A + +++ L PS++ G S GG L ++ PD F A A P +
Sbjct: 571 SDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
C+ ++ + T + +W G+ + S SP+ ++ + P I +
Sbjct: 631 CDPSIPLTTGEWEEW------GN--------PNEYKYYDYMLSYSPMDNVRAQEYPNIMV 676
Query: 711 LGA-QDLRVPVSNGLQYARALREK 733
D RV ++ LRE
Sbjct: 677 QCGLHDPRVAYWEPAKWVSKLREC 700
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} Length = 262 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 62/241 (25%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
P +V++ G + + + L+ ++++ + RG G S + +
Sbjct: 24 PPVVLVGGAL--STRAGGAPLAERLAP-HFTVICYDRRG---RG----DSGDTPPYAVER 73
Query: 597 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ D+ ID G V G S G L+ + A +
Sbjct: 74 EIEDLAAIIDAA---GG----AAFVFGMSSGAGLSLLAAASGLP--ITRLA---VFEPPY 121
Query: 656 MVGTTDIP----------------------DWCYVESYGS--------------KGKDSF 679
V + P + E G G ++
Sbjct: 122 AVDDSRPPVPPDYQTRLDALLAEGRRGDAVTYFMTEGVGVPPDLVAQMQQAPMWPGMEAV 181
Query: 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739
+ + + P + + + PT+ + G + A +
Sbjct: 182 AHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAWIRHTAQELADTI--PNARYVT 239
Query: 740 I 740
+
Sbjct: 240 L 240
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} Length = 398 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 36/282 (12%)
Query: 509 VSANLT--KGAQKPFEAIFV---SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS 563
+ + KP AI S +K+ + +P I + + + +
Sbjct: 105 STFLVLIPDNINKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFV--- 161
Query: 564 SVGYSLLIVNYRG------------SLGFGEEALQSLPGKVG----SQDVNDVLTAIDHV 607
GY + V+ + + + ++G + ++ +
Sbjct: 162 KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWM 221
Query: 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667
++ V G S G ++G A + LC +PD
Sbjct: 222 KTQKHIRKDRIVVSGFSLGTEPMM-VLGTLDTSIYAFVYNDFLCQTQERAEVMTMPDKNG 280
Query: 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727
+ + + + D + + I + P I G D + + ++ A
Sbjct: 281 RRPFPN------SIRHLIPDFWKNFNFPDIVAALAPR-PIILTEGGLDRDLDL---VRKA 330
Query: 728 RALREKGVETKVIVFPNDVHGIERPQSDF-ESFLNIGLWFKK 768
A+ K+ + R ++ L+ +F+
Sbjct: 331 YAIVGTPDNVKIYHYKKFSDPDTRKNVEYLPEGLDRNEYFRM 372
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 Length = 210 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+++LHG S +L L+ GY + ++ G G +E
Sbjct: 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL-GHSKE-----AAAPAPIG 85
Query: 597 VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + V+D + L V+ S G + + + P+C +
Sbjct: 86 ELAPGSFLAAVVDALEL---GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI 142
Query: 656 MVGTTDIPDWCYVESYGSK 674
+ YG +
Sbjct: 143 NAANYASVKTPALIVYGDQ 161
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 526 VSSSHKKDCSCD---PLIVVLHG-GPHSVSLS-SYSKS-LAFLSSVGYSLLIVNYRGSLG 579
+ HKK D P L+G G ++S++ +YS S L F+ +G L + N RG
Sbjct: 452 MFIVHKKGIKLDGSHPAF--LYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 509
Query: 580 FGE---EALQSLPGKVGS-QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 634
+GE + G + + Q+ +D A +++I G +P ++T+ GGS+GG L
Sbjct: 510 YGETWHKG-----GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 635 GQAPDKFVAAAARNP 649
Q PD F A+
Sbjct: 565 NQRPDLFGCVIAQVG 579
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 7e-04
Identities = 33/305 (10%), Positives = 81/305 (26%), Gaps = 49/305 (16%)
Query: 158 ISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQ 217
+ D + + + K +++ + + +
Sbjct: 341 VRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAVVANDR 399
Query: 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277
+ +++ +G+ + + + + + +++ + G
Sbjct: 400 FEIMTVDLETGKPTVI-ERSREAMITDFTISDNS----RFIAYGFPLKHGETDGYVM--- 451
Query: 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337
+ +Y E + + T S + P F D K L +LS +
Sbjct: 452 -------QAIHVYDMEGRK------------IFAATTENSHDYAPAFDADSKNLYYLSYR 492
Query: 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397
S + +++ S E + + L S+ S
Sbjct: 493 S------LDPSPDRVVLNF-------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 539
Query: 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV 457
D + +NV G+ I P ES+ + + G+ +P
Sbjct: 540 YDL--------NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKG 591
Query: 458 PQVKY 462
+KY
Sbjct: 592 VLLKY 596
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} Length = 315 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 7e-04
Identities = 26/137 (18%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
I+++HG ++ +++ L+ GY ++ V+ G F + S P
Sbjct: 47 RTILLMHGKN--FCAGTWERTIDVLADAGYRVIAVDQVG---FCK---SSKPAHYQYSFQ 98
Query: 594 --SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARN 648
+ + + +L + ++ +V+G S GG L T P + V
Sbjct: 99 QLAANTHALLERLGV---------ARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149
Query: 649 PLCNLALMVGTTDIPDW 665
AL V + DW
Sbjct: 150 LEDWKALGVPWRSVDDW 166
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* Length = 236 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 9e-04
Identities = 36/174 (20%), Positives = 51/174 (29%), Gaps = 45/174 (25%)
Query: 582 EEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 641
E+A + V D+ AI + +N KV +VG S GG L + A +
Sbjct: 82 EQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLV---ASKGY 137
Query: 642 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 701
V A Y YG + + P
Sbjct: 138 VDRAV-------------------GY---YGVGLEKQLNKVP------------------ 157
Query: 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755
+VK P +F +G QD VP Q +V + H R S
Sbjct: 158 EVKHPALFHMGGQDHFVPAP-SRQLITEGFGANPLLQVHWYEEAGHSFARTGSS 210
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* Length = 267 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 21/133 (15%), Positives = 48/133 (36%), Gaps = 15/133 (11%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
V++H H + K +A + S G+++ ++ S G Q+L S +
Sbjct: 13 KHFVLVHAAFHGAW--CWYKIVALMRSSGHNVTALDLGAS---GINPKQALQIPNFSDYL 67
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNPLCN 652
+ ++ + + K+ +VG + GG + + P+K F++ P +
Sbjct: 68 SPLMEFMASLPANE-----KIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNID 122
Query: 653 LALMVGTTDIPDW 665
+
Sbjct: 123 ATTVCTKAGSAVL 135
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.92 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.92 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.92 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.91 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.9 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.9 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.9 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.9 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.9 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.89 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.89 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.89 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.89 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.88 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.88 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.88 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.88 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.88 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.88 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.88 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.88 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.87 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.87 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.87 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.87 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.86 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.86 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.86 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.86 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.86 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.86 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.86 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.85 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.85 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.85 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.85 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.85 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.85 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.85 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.85 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.85 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.85 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.85 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.85 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.85 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.85 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.84 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.84 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.84 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.84 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.84 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.84 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.84 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.83 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.83 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.83 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.83 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.83 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.83 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.82 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.82 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.82 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.81 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.81 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.81 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.81 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.81 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.81 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.81 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.81 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.81 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.81 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.81 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.8 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.8 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.8 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.79 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.79 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.79 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.79 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.79 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.78 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.78 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.78 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.77 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.77 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.77 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.77 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.77 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.77 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.77 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.76 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.76 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.76 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.76 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.76 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.76 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.76 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.76 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.76 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.76 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.76 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.75 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.75 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.75 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.75 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.75 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.75 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.75 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.75 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.74 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.74 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.74 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.74 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.74 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.74 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.74 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.74 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.74 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.74 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.73 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.73 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.73 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.73 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.73 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.73 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.73 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.73 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.73 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.72 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.72 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.72 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.72 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.72 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.72 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.71 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.71 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.71 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.71 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.71 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.71 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.71 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.7 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.7 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.7 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.7 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.7 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.7 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.69 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.69 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.69 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.69 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.69 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.69 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.69 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.69 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.68 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.68 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.68 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.68 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.68 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.68 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.67 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.67 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.67 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.67 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.67 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.66 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.66 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.66 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.66 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.65 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.65 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.65 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.64 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.64 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.64 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.64 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.63 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.63 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.63 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.62 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.62 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.61 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.61 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.4 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.6 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.59 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.57 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.56 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.56 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.56 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.56 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.55 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.55 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.54 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.53 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.53 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.53 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.53 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.53 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.53 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.53 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.53 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.52 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.52 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.52 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 99.51 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.5 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.49 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.49 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.49 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.48 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.48 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.48 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.47 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.47 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.46 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.46 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.45 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.43 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.43 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.43 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.42 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.41 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.4 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.4 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.4 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 99.4 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.4 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.4 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.39 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.39 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.38 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.38 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.37 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.37 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.37 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.36 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.36 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.35 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.35 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.35 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 99.35 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.34 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.34 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.34 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.34 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.33 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.33 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.33 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.33 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.33 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.32 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.32 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.32 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.32 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.31 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.31 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.29 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.29 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 99.29 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.28 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.28 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.28 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 99.28 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.27 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.27 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.27 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.27 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.27 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.26 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.26 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.26 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.26 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.25 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.24 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.24 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.23 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.23 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.23 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.22 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.22 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.21 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.21 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.21 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.2 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.2 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.2 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.19 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.18 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.17 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.16 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.16 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.15 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.15 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.15 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.13 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.12 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.12 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.12 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.12 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.12 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 99.12 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.11 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.11 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.1 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.1 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.09 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.09 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.08 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.08 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.08 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.08 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.07 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.05 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.05 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.05 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.05 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.04 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.04 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.04 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.03 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.02 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.01 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.01 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.01 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.99 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.98 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.97 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.95 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.95 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.95 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.95 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.94 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.94 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.92 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.92 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.92 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.91 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.9 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.89 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.88 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.88 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.87 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.86 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.86 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.86 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.85 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.84 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.84 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.83 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.82 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.82 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.81 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.79 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.79 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.78 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.75 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.75 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.74 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.74 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.74 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.73 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.73 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.72 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.72 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.7 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.69 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.69 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.64 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.63 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.63 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.62 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.62 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 98.62 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.58 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.56 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.55 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.54 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.5 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.48 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.46 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.46 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.45 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.41 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.37 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.33 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.33 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.32 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.29 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.28 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.22 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.22 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.21 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.19 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.17 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.1 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.1 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.06 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.98 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.98 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.97 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.96 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.95 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.88 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.84 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.79 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.78 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.77 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.68 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.67 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.65 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.64 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.64 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.63 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.6 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.59 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.58 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.57 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.56 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.54 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.53 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.53 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.47 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.39 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.37 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.27 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 97.23 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.2 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.13 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.09 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.94 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.92 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.87 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-56 Score=520.46 Aligned_cols=610 Identities=15% Similarity=0.179 Sum_probs=427.8
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
.+.||||++|+|.......-+......+|++++.+ ++.++|+..+ +.+..|+|||||++|||+++. .+
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~--~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~~~-----~i 134 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK--RQLITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DI 134 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCC--CcEEEcccCC-----CcceeeEECCCCCEEEEEECC-----eE
Confidence 34589999999988654433334457888988743 3556665543 568899999999999999764 48
Q ss_pred EEEe-cCCcceEEEecCC------cccccccCC---CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004141 127 FELW-SQSQLEKEFHVPQ------TVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~------~~~g~~~~~---~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++ .+++.++++.... +....||.+ +....+.|||||++|||.+.+..... .|......... ...
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~-~~~~~~~~~~~---~~~ 210 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP-LIEYSFYSDES---LQY 210 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC-EEEEEECCSTT---CSS
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCc-eEEEEeecCCC---CCC
Confidence 8777 5666666654211 111112221 12246899999999999986554221 11110000000 000
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccC---C---ceeeccCCC-----CCCccceEEEecCCCCCccEEEEEeecC
Q 004141 197 SWKGQGDWEEDWGETYAGKRQPSLFVININS---G---EVQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---~---~~~~l~~~~-----~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
.....+.|...+ . ......|+++|+++ + +.+.+. .+ ....+..++|||||+. +++..++.
T Consensus 211 ~~~~~~~yp~~G-~---~~~~~~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~----~~~~~~r~ 281 (740)
T 4a5s_A 211 PKTVRVPYPKAG-A---VNPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (740)
T ss_dssp CEEEEEECCBTT-S---CCCEEEEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred CcceeecCCCCc-C---cCCeeEEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeE----EEEEeCCC
Confidence 000122232221 1 01234799999999 8 666663 21 4446778999999998 88877543
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-------ceec--CCCCcc-----ccceeecCCCCEE
Q 004141 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-------VVNL--TESISS-----AFFPRFSPDGKFL 331 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~l--t~~~~~-----~~~p~~SpDG~~l 331 (771)
. ....|+++|+ ++++ ..++ ..+... ..+|.|||||+.|
T Consensus 282 ~-----------~~~~i~~~d~-----------------~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 282 Q-----------NYSVMDICDY-----------------DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp T-----------TEEEEEEEEE-----------------ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred C-----------CEEEEEEEEC-----------------CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 3 2237999998 5655 2333 112222 3489999999999
Q ss_pred E-EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004141 332 V-FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 332 ~-f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~- 409 (771)
+ |.+.++ | ..+||++|++++..+++|.+..++.. .+++|++.|+|.++.
T Consensus 334 ~~~~s~~~----G----~~~l~~~~~~~~~~~~lT~g~~~v~~---------------------~~~~d~~~i~f~~~~~ 384 (740)
T 4a5s_A 334 YKIISNEE----G----YRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEY 384 (740)
T ss_dssp EEEEECTT----S----CEEEEEEETTCSSCEESCCSSSCEEE---------------------EEEECSSEEEEEESCG
T ss_pred EEEEEcCC----C----ceEEEEEECCCCceEecccCCEEEEE---------------------EEEEeCCEEEEEEecC
Confidence 8 666553 3 57899999999888888876543322 134568899999876
Q ss_pred ---CCeeEEEEEECCCCcEE-EecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCC
Q 004141 410 ---GSSQVIISVNVSSGELL-RITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSS 481 (771)
Q Consensus 410 ---~~~~~l~~~d~~tg~~~-~l~~~----~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~ 481 (771)
.+..+||++++++++.+ +|+.. ........||++++++++.+++++ |+.+++.+..+++ .+.
T Consensus 385 ~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~---~~~------ 454 (740)
T 4a5s_A 385 KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK---GLR------ 454 (740)
T ss_dssp GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE---EEE------
T ss_pred CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc---EEE------
Confidence 45679999999887765 67743 234566899999999999999987 8889988865432 111
Q ss_pred CCCCCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-Ccch-HHH
Q 004141 482 PISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-KSL 559 (771)
Q Consensus 482 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~-~~~ 559 (771)
+.+.++.+...+....+...+. .++ ..+|.++.++++.|+++++.+++|+||++||+++.... ..|. ...
T Consensus 455 -~l~~n~~~~~~~~~~~~~~~~~------~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~ 526 (740)
T 4a5s_A 455 -VLEDNSALDKMLQNVQMPSKKL------DFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWA 526 (740)
T ss_dssp -EEECCHHHHHHHTTEECCEEEE------EEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHH
T ss_pred -EeccChhhhhhhhhccCCccEE------EEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHH
Confidence 1122333333333322211110 122 55789999999999987778899999999998876421 2222 233
Q ss_pred HHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC
Q 004141 560 AFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 638 (771)
Q Consensus 560 ~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p 638 (771)
..|+ ++||+|+++|+||++++|..+.......++..+++|+.++++++.+++.+|++||+|+||||||++++.++.++|
T Consensus 527 ~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p 606 (740)
T 4a5s_A 527 TYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGS 606 (740)
T ss_dssp HHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTC
T ss_pred HHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCC
Confidence 4555 599999999999999999988877777888888999999999999888789999999999999999999999999
Q ss_pred CceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCC-ChhhHHHHhhcCcccccCCCCC-cEEEEeeCCCC
Q 004141 639 DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDL 716 (771)
Q Consensus 639 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-P~lii~G~~D~ 716 (771)
++|+++|+.+|+.++..+. ..+.+. +...+ ..+....+...+|...+.++++ |+||+||+.|.
T Consensus 607 ~~~~~~v~~~p~~~~~~~~-------~~~~~~--------~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~ 671 (740)
T 4a5s_A 607 GVFKCGIAVAPVSRWEYYD-------SVYTER--------YMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADD 671 (740)
T ss_dssp SCCSEEEEESCCCCGGGSB-------HHHHHH--------HHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCS
T ss_pred CceeEEEEcCCccchHHhh-------hHHHHH--------HcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCC
Confidence 9999999999998765331 111111 11122 1345567888899999999986 99999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+||++++.+++++|+.++++++++++|+++|.+........++..+.+||+++|+
T Consensus 672 ~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 726 (740)
T 4a5s_A 672 NVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQCFS 726 (740)
T ss_dssp SSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHCCCCeEEEEECCCCCcCCCCccHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999986666677889999999999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-52 Score=485.65 Aligned_cols=587 Identities=18% Similarity=0.236 Sum_probs=419.6
Q ss_pred cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccc----cccceEEEeC--CCCCe-EEEEecCCCCCCe
Q 004141 53 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE----MTGASAVVPS--PSGSK-LLVVRNPENESPI 125 (771)
Q Consensus 53 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~----~~~~~~~~~S--PdG~~-la~~~~~~~~~~~ 125 (771)
|..++|.....+ ...+..||.+ ..++..++++..+.... ......+.|| |||++ |||.... ..+
T Consensus 33 ~~~~~~~~~~~~---~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~---~~~ 103 (662)
T 3azo_A 33 GDEVWWVAPRPA---EAGRATLVRR---RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG---DQR 103 (662)
T ss_dssp TTEEEEEEEETT---TTTEEEEEEE---CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT---TCC
T ss_pred CCeEEEEecCcc---cCCcEEEEEE---CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC---CCe
Confidence 457888876432 1245677775 23446677765542210 0001145565 99999 9998754 356
Q ss_pred EEEEecC----CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004141 126 QFELWSQ----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 126 ~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
+|.+..+ +..++++......++ .....++|||||++|+|.+.+.....
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~----------------------- 155 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGG-----LRWADPVLLPERGEVWCMAEEFTGEG----------------------- 155 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTC-----EEEEEEEEETTTTEEEEEEEEECSSS-----------------------
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCC-----ccccCcEECCCCCEEEEEEecccCCC-----------------------
Confidence 8888843 666666553211110 12258999999999999976531100
Q ss_pred ccccCCcCcccCCccCceEEEEEccC------CceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004141 202 GDWEEDWGETYAGKRQPSLFVININS------GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~------~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
. .....+|+++|+++ ++.+.+ + .....+..++|||||++ |+|+++......
T Consensus 156 --------~---~~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDG~~----la~~~~~~~~~~----- 213 (662)
T 3azo_A 156 --------P---SDVRRFLAAVPLDGSAAADRSAVREL--SDDAHRFVTGPRLSPDGRQ----AVWLAWDHPRMP----- 213 (662)
T ss_dssp --------T---TCEEEEEEEEETTSTTTTCGGGSEES--SCSCSSEECCCEECTTSSE----EEEEEECTTCCT-----
T ss_pred --------C---CCceeEEEEEECCCCccccCCceeEE--EecCCCcccCceECCCCCE----EEEEECCCCCCC-----
Confidence 0 11447899999999 888888 5 55556778999999999 999986442100
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCC-CC---cceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSE-DL---PVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~---~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
-...+||++|+ + ++ +.++|+.. ...+..|.|||||+ |+|.+..+ | ..
T Consensus 214 --~~~~~i~~~d~-----------------~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~----~----~~ 265 (662)
T 3azo_A 214 --WEGTELKTARV-----------------TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT----G----WW 265 (662)
T ss_dssp --TTCEEEEEEEE-----------------CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT----S----SC
T ss_pred --CCCcEEEEEEE-----------------CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC----C----Ce
Confidence 02248999998 5 45 66777754 46788999999999 88888664 2 45
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+||++|+.+++.++++..... ...| .|......++|++|++ ++++... +..+||.+|++++++++|+
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~----------~~~p-~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEE----------FAGP-LWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSB----------SSCC-CCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred EEEEEECCCCceeeccccccc----------ccCc-cccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCcEEEec
Confidence 799999877765555432211 0001 1222234567778887 6666666 8889999999999999887
Q ss_pred CCCCCceeeEE-eecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcce-eeeeccc
Q 004141 430 PAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-IMKIPVK 507 (771)
Q Consensus 430 ~~~~~~~~~~~-s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ 507 (771)
..... ...+ +++++.+++++++.+.|..+|+.++.+++ . ..++....+ .+ ....+. ...
T Consensus 333 ~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~-~~l~~~~~~--~~--------~~~~~~~~~~---- 393 (662)
T 3azo_A 333 GPWTE--WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR--A-RTIGARHTD--PV--------DPAYYPEPQI---- 393 (662)
T ss_dssp SSCCE--EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC--E-EEEESCCCC--SS--------CGGGSCCCEE----
T ss_pred CCCCe--EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc--e-EEeecCCcc--cC--------CccccCcceE----
Confidence 66542 2344 88999999999999999999999876543 1 111111000 01 111110 111
Q ss_pred CcccccccCCCceEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChh
Q 004141 508 GVSANLTKGAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 583 (771)
Q Consensus 508 ~~~~~~~~~~g~~l~~~~~~P~~~~----~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~ 583 (771)
..+...+|..++++++.|++.. ..++.|+||++||+++......|...++.|+++||.|+++|+||++++|.+
T Consensus 394 ---~~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~ 470 (662)
T 3azo_A 394 ---RTFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRA 470 (662)
T ss_dssp ---EEEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHH
T ss_pred ---EEEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHH
Confidence 1334457889999999998653 456789999999998776556788889999999999999999999999999
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-CCCC
Q 004141 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDI 662 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-~~~~ 662 (771)
+.......++..+++|+.++++++++++.++++||+|+||||||++++.++.+ |++|+++|+.+|+.++..+.. ....
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 549 (662)
T 3azo_A 471 YRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHD 549 (662)
T ss_dssp HHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCG
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccc
Confidence 98776677777789999999999999988899999999999999999998886 999999999999998766543 1111
Q ss_pred CcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
....+... +.... .+..+.+...+|+..+.++++|+|++||++|.+||++++++++++|+..|++++++++
T Consensus 550 ~~~~~~~~--------~~~~~-~~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 620 (662)
T 3azo_A 550 FESRYLDF--------LIGSF-EEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGCGVPHAYLSF 620 (662)
T ss_dssp GGTTHHHH--------HTCCT-TTCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTSCCCEEEEEE
T ss_pred hhhHhHHH--------HhCCC-ccchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 00011111 11111 2455677788999999999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 743 PNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++++|++...+...+++..+.+||.++|+
T Consensus 621 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 649 (662)
T 3azo_A 621 EGEGHGFRRKETMVRALEAELSLYAQVFG 649 (662)
T ss_dssp TTCCSSCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHhC
Confidence 99999987666667889999999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-53 Score=481.14 Aligned_cols=560 Identities=16% Similarity=0.214 Sum_probs=408.7
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004141 24 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
+.+..+.++++...|-. ...+ |+||++|+|..... ....||. + .+++.+++|... ...+..
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~----~~DG~~la~~s~~~------g~~~lw~--~--~~g~~~~lt~~~----~~~~~~ 69 (582)
T 3o4h_A 9 FSRIVRDVERLIAVEKY-SLQG----VVDGDKLLVVGFSE------GSVNAYL--Y--DGGETVKLNREP----INSVLD 69 (582)
T ss_dssp HHHHHHHHHHHHHSCEE-EEEE----EETTTEEEEEEEET------TEEEEEE--E--ETTEEEECCSSC----CSEECE
T ss_pred HHHHHHHHHHHhccchh-eeec----CCCCCeEEEEEccC------CceeEEE--E--cCCCcEeeeccc----cccccc
Confidence 45555566777666632 2222 45999999987532 3456776 4 344667776543 125778
Q ss_pred EEeCCCCCeEEEEecCC--CCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 104 VVPSPSGSKLLVVRNPE--NESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
|+|||| +++|.+... .....+|.+.. .+...+++... .. ...+|||||+.++|++...
T Consensus 70 ~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~-~~----------~~~~~s~dg~~~~~~s~~~----- 131 (582)
T 3o4h_A 70 PHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK-PM----------RILSGVDTGEAVVFTGATE----- 131 (582)
T ss_dssp ECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTSC-SB----------EEEEEEECSSCEEEEEECS-----
T ss_pred ccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCCC-Cc----------eeeeeCCCCCeEEEEecCC-----
Confidence 999999 677877652 23345666664 55544332221 22 3679999999999986432
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
..+.+||+++++.+++. .... .+++|||||+. |+
T Consensus 132 --------------------------------------~~~~l~d~~~g~~~~l~--~~~~--~~~~~spDG~~----la 165 (582)
T 3o4h_A 132 --------------------------------------DRVALYALDGGGLRELA--RLPG--FGFVSDIRGDL----IA 165 (582)
T ss_dssp --------------------------------------SCEEEEEEETTEEEEEE--EESS--CEEEEEEETTE----EE
T ss_pred --------------------------------------CCceEEEccCCcEEEee--cCCC--ceEEECCCCCE----EE
Confidence 23447899999988883 3222 78999999999 99
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
+.+...+. ...||++|+ ++++.++|+.+.+.+.+|+|||||++|+ .+...
T Consensus 166 ~~~~~~~~-----------~~~i~~~d~-----------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~- 215 (582)
T 3o4h_A 166 GLGFFGGG-----------RVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETA- 215 (582)
T ss_dssp EEEEEETT-----------EEEEEEEET-----------------TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECS-
T ss_pred EEEEcCCC-----------CeEEEEEcC-----------------CCCCceEeecCCCccccceECCCCCEEE-EccCC-
Confidence 98753321 136999998 8888999998888899999999999998 43332
Q ss_pred CCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc--------cccCCCEEEEEeeeCC
Q 004141 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP--------WLSDGCTMLLSSIWGS 411 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~--------~s~Dg~~l~~~~~~~~ 411 (771)
| ..+|+++|+++++.+ ++..... .+..+. ||||| .++++...++
T Consensus 216 ---~----~~~i~~~d~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~spdg-~~~~~~~~~g 267 (582)
T 3o4h_A 216 ---R----EARLVTVDPRDGSVE-DLELPSK-------------------DFSSYRPTAITWLGYLPDG-RLAVVARREG 267 (582)
T ss_dssp ---S----CEEEEEECTTTCCEE-ECCCSCS-------------------HHHHHCCSEEEEEEECTTS-CEEEEEEETT
T ss_pred ---C----eeEEEEEcCCCCcEE-EccCCCc-------------------ChhhhhhccccceeEcCCC-cEEEEEEcCC
Confidence 1 357999999887764 2222100 112334 99999 6888888888
Q ss_pred eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhh
Q 004141 412 SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
...||.+ |+..+.. .+.+....|+ ++ .++++.++..+|+++|+.+..+ + + ..+ .+++...
T Consensus 268 ~~~l~~~----g~~~~~~--~~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~-~----~--~~l-----~~~~~~~ 327 (582)
T 3o4h_A 268 RSAVFID----GERVEAP--QGNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE-P----L--LEG-----GLPEDLR 327 (582)
T ss_dssp EEEEEET----TEEECCC--SSEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC-E----E--ECC-----CCCHHHH
T ss_pred cEEEEEE----CCeeccC--CCceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC-c----e--EEE-----ecCCccc
Confidence 8888876 6555422 2334456677 55 5567788889999999987543 1 1 111 1111000
Q ss_pred hccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEE
Q 004141 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 571 (771)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~ 571 (771)
... ..... ..+...+|.+++++++.|++.. .+.|+||++||+++......|...++.|+++||.|++
T Consensus 328 --~~~--~~~~~-------~~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~ 394 (582)
T 3o4h_A 328 --RSI--AGSRL-------VWVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394 (582)
T ss_dssp --HTE--EEEEE-------EEEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEEEE
T ss_pred --ccc--CcceE-------EEEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHHHHHHhCCCEEEE
Confidence 000 01111 2445567889999999998643 3789999999988776666788899999999999999
Q ss_pred ECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 572 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 572 ~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
+|+||++++|.++.......++...++|+.++++++.+++.++ +++|+|||+||++++.++.++|++++++|+.+|+.
T Consensus 395 ~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~ 472 (582)
T 3o4h_A 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVV 472 (582)
T ss_dssp ECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCC
T ss_pred eccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 9999999999998877777777788999999999999987666 99999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH
Q 004141 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR 731 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~ 731 (771)
++..+....+.....+.+.+ .+ ...+.+...+|...+.++++|+|++||++|.++|++++++++++++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 540 (582)
T 3o4h_A 473 DWEEMYELSDAAFRNFIEQL--------TG----GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGELL 540 (582)
T ss_dssp CHHHHHHTCCHHHHHHHHHH--------TT----TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred CHHHHhhcccchhHHHHHHH--------cC----cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHHHH
Confidence 88766544332110011111 11 3456678889999999999999999999999999999999999999
Q ss_pred hCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 732 EKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
..|++++++++|+++|.+..++...++++.+.+||+++|+
T Consensus 541 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~fl~~~l~ 580 (582)
T 3o4h_A 541 ARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 580 (582)
T ss_dssp HTTCCEEEEEETTCCSSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCCCEEEEEECCCCCCCCChHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988666677899999999999985
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=476.05 Aligned_cols=592 Identities=13% Similarity=0.132 Sum_probs=416.0
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Cccc-cccceEEEeCCCCCeEEEEecCCCC-CCeE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPVE-MTGASAVVPSPSGSKLLVVRNPENE-SPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~~-~~~~~~~~~SPdG~~la~~~~~~~~-~~~~ 126 (771)
++||++++|.....+ .....||+.+. .+++.+.|.... +... ......++|||||++|||.+...+. ..++
T Consensus 80 ~~dG~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i 153 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGL----QNQRVLYVQDS--LEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI 153 (710)
T ss_dssp EEETTEEEEEEECSS----CSSCEEEEESS--TTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred EEECCEEEEEEEcCC----ceEEEEEEEcC--CCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence 369999999986432 34557888654 233444343221 1110 0136789999999999999886532 2377
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
++++ .+++..+.+...... ..++|||||+.|+|.+........ .
T Consensus 154 ~v~d~~tg~~~~~~~~~~~~----------~~~~wspDg~~l~~~~~~~~~~~~--------~----------------- 198 (710)
T 2xdw_A 154 KFMKVDGAKELPDVLERVKF----------SCMAWTHDGKGMFYNAYPQQDGKS--------D----------------- 198 (710)
T ss_dssp EEEETTTTEEEEEEEEEECS----------CCEEECTTSSEEEEEECCCCSSCC--------S-----------------
T ss_pred EEEECCCCCCCcccccCccc----------ceEEEEeCCCEEEEEEECCccccc--------c-----------------
Confidence 7777 566655543322122 589999999999999865431100 0
Q ss_pred CCcCcccCCccCceEEEEEccCCcee--ec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~--~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
+..-.......||++++.+++.. .+ ...........+.|||||+. |++.+..... ...+|
T Consensus 199 ---~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~~----------~~~~l 261 (710)
T 2xdw_A 199 ---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY----VLLSIREGCD----------PVNRL 261 (710)
T ss_dssp ---SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECSSS----------SCCEE
T ss_pred ---ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE----EEEEEEccCC----------CccEE
Confidence 00000113468999999888632 22 11111233568899999999 9998753211 13589
Q ss_pred EEEecccccchhhhhhhhcCCCCC------C--cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 283 YAVRVSLYKSEASELELKESSSED------L--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~------~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
|++|+ .+ + ..++|+....... ..|+|||++|+|.++.. ....+|+++
T Consensus 262 ~~~d~-----------------~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~-------~~~~~l~~~ 316 (710)
T 2xdw_A 262 WYCDL-----------------QQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH-------SPNYRLINI 316 (710)
T ss_dssp EEEEG-----------------GGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT-------CTTCEEEEE
T ss_pred EEEEC-----------------cccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC-------CCCCEEEEE
Confidence 99998 43 3 4677776554443 46999999999998764 235689999
Q ss_pred ecCCCCC---CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecC
Q 004141 355 DWPTNGN---FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITP 430 (771)
Q Consensus 355 d~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~ 430 (771)
|+.+++. +.++.... . ..+..+.|+++ ..|+++...++..+|+.+++.+|+ ++.|..
T Consensus 317 d~~~~~~~~~~~l~~~~~-----------~-------~~~~~~~~~~~-~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~ 377 (710)
T 2xdw_A 317 DFTDPEESKWKVLVPEHE-----------K-------DVLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGALLKIFPL 377 (710)
T ss_dssp ETTSCCGGGCEEEECCCS-----------S-------CEEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCEEEEECC
T ss_pred eCCCCCcccceeccCCCC-----------C-------CeEEEEEEEcC-CEEEEEEEECCEEEEEEEECCCCCEEEecCC
Confidence 9887642 12211110 0 01234678854 568888888888999999996665 577776
Q ss_pred CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcc
Q 004141 431 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVS 510 (771)
Q Consensus 431 ~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 510 (771)
..+.+....++++++.+++..++.++|.++|++++.+++. ....++.. ++..++ ...+....+
T Consensus 378 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~-~~~~l~~~--~~~~~~--------~~~~~~~~~------ 440 (710)
T 2xdw_A 378 EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL-EPRVFREV--TVKGID--------ASDYQTVQI------ 440 (710)
T ss_dssp CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC-CCEEEEEC--CCTTCC--------GGGEEEEEE------
T ss_pred CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc-ceEEeeec--ccCCcC--------ccccEEEEE------
Confidence 5443444567789999999999999999999999865431 01111111 111122 111222222
Q ss_pred cccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCC
Q 004141 511 ANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 511 ~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
.+...+|.+++++++.|++....++.|+||++||+++......|......|++ +||+|+++|+||++++|..|.....
T Consensus 441 -~~~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~ 519 (710)
T 2xdw_A 441 -FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGI 519 (710)
T ss_dssp -EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTS
T ss_pred -EEEcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhh
Confidence 44566789999999999876566789999999999877666667776677777 9999999999999999998877655
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
.......++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ..
T Consensus 520 ~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~ 597 (710)
T 2xdw_A 520 LANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW--TT 597 (710)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HH
T ss_pred hhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhH--HH
Confidence 5556667899999999999998889999999999999999999999999999999999999887655432211112 12
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccC-----CCCC-cEEEEeeCCCCccCcHHHHHHHHHHHhC-------CCC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-----KVKT-PTIFLLGAQDLRVPVSNGLQYARALREK-------GVE 736 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~i~~-P~lii~G~~D~~vp~~~~~~~~~~l~~~-------g~~ 736 (771)
.++. ....+....+...+|+.++. ++++ |+||+||++|.+||+.++.+++++|+.. |.+
T Consensus 598 ~~g~--------~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~ 669 (710)
T 2xdw_A 598 DYGC--------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNP 669 (710)
T ss_dssp HHCC--------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSC
T ss_pred hCCC--------CCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHhhhccccCCCcC
Confidence 2221 12245556677889999988 7886 9999999999999999999999999988 889
Q ss_pred EEEEEeCCCCccCCCCC-ChHHHHHHHHHHHHHhhC
Q 004141 737 TKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~L~ 771 (771)
+++++++++||++..+. ...+.+..+.+||.++|+
T Consensus 670 ~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 705 (710)
T 2xdw_A 670 LLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 705 (710)
T ss_dssp EEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999987643 345788899999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=497.27 Aligned_cols=616 Identities=16% Similarity=0.170 Sum_probs=414.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+..||||++|+|........+......++++++.+. +.++++... .....+..++|||||++|||+++. +
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~--~~~~~~~~~~~SPdG~~la~~~~~-----~ 135 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPE--VSNAKLQYAGWGPKGQQLIFIFEN-----N 135 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTT--CCSCCCSBCCBCSSTTCEEEEETT-----E
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCC--ceEeccCCc--cccccccccEECCCCCEEEEEECC-----e
Confidence 4556889999999876443333334578889887443 334454322 111226679999999999999863 4
Q ss_pred EEEEe-cCCcceEEEecCCc-c-----cccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 126 QFELW-SQSQLEKEFHVPQT-V-----HGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~-~-----~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
+++++ .+++.++++..... . .+.+|.++ ....++|||||++|+|.+.+.... ..+........ .
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~~~-----~ 209 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYTGS-----I 209 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCSSS-----S
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccCCc-----C
Confidence 77777 66677777654211 1 11111111 124799999999999998654321 11111100000 0
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCC------CCccceEEEecCCCCCccEEEEEeecCcce
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK------SLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
......+.|.+++ .. .....|++||+.+++. +.+. .. ...+..++|||||+. |++.+.+..
T Consensus 210 ~~~~~~~~~~~~G-~~---~~~~~l~~~d~~~~~~~~~l~--~~~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~-- 277 (723)
T 1xfd_A 210 YPTVKPYHYPKAG-SE---NPSISLHVIGLNGPTHDLEMM--PPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ-- 277 (723)
T ss_dssp SCCCEEEECCBTT-SC---CCEEEEEEEESSSSCCCEECC--CCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS--
T ss_pred CCcceeccCCCCC-CC---CCeeEEEEEECCCCceeEEee--CCccCCCccceeEEEEEeCCCeE----EEEEEcCCC--
Confidence 0111233344432 21 2345899999999884 6662 22 345678999999997 877654322
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--Cccc----cceeecCCCCEEEEE-ecCCCCC
Q 004141 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSA----FFPRFSPDGKFLVFL-SAKSSVD 341 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~~~~----~~p~~SpDG~~l~f~-~~~~~~~ 341 (771)
....|+++|+ .+++..++... ...+ ..|+|||||++|+|. +..+
T Consensus 278 ---------~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~--- 328 (723)
T 1xfd_A 278 ---------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ--- 328 (723)
T ss_dssp ---------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC---
T ss_pred ---------CeEEEEEEeC-----------------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc---
Confidence 2247999998 77776655322 1222 489999999999998 4433
Q ss_pred CCCccccccceeee-cCCCC---CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEE
Q 004141 342 SGAHSATDSLHRID-WPTNG---NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVI 415 (771)
Q Consensus 342 ~g~~~~~~~l~~~d-~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l 415 (771)
|.+....+||++| ..++. .+.++.+...+ ...++|||||+.|+|.+..+ +..+|
T Consensus 329 -~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 329 -GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDV-------------------TKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp -SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCE-------------------EEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred -CCCcceeEEEEEeccCCCCccceeEeecCCeEE-------------------EeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 3223356899999 46655 45554322111 11257999999999888765 67889
Q ss_pred EEEECCCC-cEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhh
Q 004141 416 ISVNVSSG-ELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 491 (771)
Q Consensus 416 ~~~d~~tg-~~~~l~~~---~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (771)
|.++..++ +.+.|+.. ...+....||+||+.+++.+++++.|..+++ +...+ .++.+ + +.+..+.
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~---~~~~~--~-----~~~~~~~ 457 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDK---KKMFD--L-----ETNEHVK 457 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTC---CEEEE--E-----ECCHHHH
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCC---CEEEE--e-----ccChhhh
Confidence 99998765 45666642 3345567899999999999999999987665 43222 22211 1 1122222
Q ss_pred hccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CC--cchHHHHHHHHCCcE
Q 004141 492 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LS--SYSKSLAFLSSVGYS 568 (771)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~--~~~~~~~~la~~G~~ 568 (771)
..+....+. +.+. +.+...+| +++++++.|+++...+++|+||++||+++... .. .+......|+++||.
T Consensus 458 ~~~~~~~~~----~~~~--~~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~ 530 (723)
T 1xfd_A 458 KAINDRQMP----KVEY--RDIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAV 530 (723)
T ss_dssp HHHHTSCCC----BCCB--CCEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCE
T ss_pred hhhhhccCC----CceE--EEEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEE
Confidence 222222221 1111 23445567 99999999997666788999999999887632 22 233556677789999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC----CCceeEE
Q 004141 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAA 644 (771)
Q Consensus 569 Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~~~ 644 (771)
|+++|+||++++|..+.......++...++|+.++++++.+++.+|++||+|+||||||++++.++.++ |++++++
T Consensus 531 vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~ 610 (723)
T 1xfd_A 531 VVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCG 610 (723)
T ss_dssp EECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEE
T ss_pred EEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEE
Confidence 999999999888887766556666667799999999999888778899999999999999999999999 9999999
Q ss_pred EecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHH
Q 004141 645 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 645 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~ 723 (771)
|+.+|+.++..+ ...+.+.+.. .+. .....+...++...+.+++ +|+||+||++|.++|++++
T Consensus 611 v~~~~~~~~~~~-------~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~ 674 (723)
T 1xfd_A 611 SALSPITDFKLY-------ASAFSERYLG--------LHG-LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHT 674 (723)
T ss_dssp EEESCCCCTTSS-------BHHHHHHHHC--------CCS-SCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHH
T ss_pred EEccCCcchHHh-------hhhccHhhcC--------Ccc-CChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHH
Confidence 999998765422 1111111100 010 1112344556777888999 7999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++++++|+.++++++++++|+++|.+...+...+++..+.+||+++|+
T Consensus 675 ~~~~~~l~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~l~ 722 (723)
T 1xfd_A 675 AELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 722 (723)
T ss_dssp HHHHHHHHHTTCCCEEEEETTCCSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHCCCCeEEEEECCCCcccccCcchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999986556667889999999999875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=470.81 Aligned_cols=586 Identities=13% Similarity=0.135 Sum_probs=415.0
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Ccc-ccccceEEEeCCCCCeEEEEecCCC-CCC
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPV-EMTGASAVVPSPSGSKLLVVRNPEN-ESP 124 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~-~~~-~~~~~~~~~~SPdG~~la~~~~~~~-~~~ 124 (771)
..++||++++|.+.... .....||+.+. .+++.++|+... +.. .......++|||||++|||.....+ +..
T Consensus 74 ~p~~dG~~~~~~~~~~~----~~~~~l~~~~~--~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKD----KEKAILYWRQG--ESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEA 147 (695)
T ss_dssp CCEEETTEEEEEEECTT----CSSCEEEEEES--TTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCC
T ss_pred CCEEECCEEEEEEEcCC----CeEEEEEEEcC--CCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceE
Confidence 34479999999886532 33567888664 344566666532 100 0124678999999999999988653 346
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004141 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.+++++ .+++..+....... .+..++|||||+.|+|.+.+......
T Consensus 148 ~i~v~dl~tg~~~~~~~~~~~---------~~~~~~wspDg~~l~~~~~d~~~~~~------------------------ 194 (695)
T 2bkl_A 148 VLHVIDVDSGEWSKVDVIEGG---------KYATPKWTPDSKGFYYEWLPTDPSIK------------------------ 194 (695)
T ss_dssp EEEEEETTTCCBCSSCCBSCC---------TTCCCEECTTSSEEEEEECCCCTTSC------------------------
T ss_pred EEEEEECCCCCCcCCcccCcc---------cccceEEecCCCEEEEEEecCCCCCc------------------------
Confidence 777777 55543211111111 12589999999999999765421100
Q ss_pred ccCCcCcccCCccCceEEEEEccCCce--eeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 204 WEEDWGETYAGKRQPSLFVININSGEV--QAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
.-......+||++++.+++. +.+...+ .......+.|||||+. |++.++... ...
T Consensus 195 -------~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~-----------~~~ 252 (695)
T 2bkl_A 195 -------VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY----LFVYILRGW-----------SEN 252 (695)
T ss_dssp -------GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC----EEEEEEETT-----------TEE
T ss_pred -------cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE----EEEEEeCCC-----------Cce
Confidence 00011346899999998873 3331112 2235668899999999 999875431 223
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+||+++. .+++.++|+........+.| |||+ |+|.++.+ ....+|+++|+.+++
T Consensus 253 ~l~~~~~-----------------~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~-------~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 253 DVYWKRP-----------------GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEG-------APRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEECT-----------------TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTT-------CTTCEEEEEBTTBCS
T ss_pred EEEEEcC-----------------CCCceEEeecCCCceEEEEe-cCCc-EEEEECCC-------CCCCEEEEEeCCCCC
Confidence 7999986 66778888877766777877 7888 88887653 235689999987765
Q ss_pred C---CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-CCCce
Q 004141 361 N---FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFS 436 (771)
Q Consensus 361 ~---~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~~~~ 436 (771)
. +.+.... .. ..+..++|+ +..|+++...++..+||.++++++..+.+... .+.+.
T Consensus 307 ~~~~~~l~~~~-----------~~-------~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~ 366 (695)
T 2bkl_A 307 RASWKEIVPED-----------SS-------ASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAAS 366 (695)
T ss_dssp GGGCEEEECCC-----------SS-------CEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEEC
T ss_pred ccCCeEEecCC-----------CC-------CeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEE
Confidence 3 1221110 00 012345666 44688888888999999999876667777644 33334
Q ss_pred eeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccC
Q 004141 437 WSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKG 516 (771)
Q Consensus 437 ~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (771)
...++++++.+++..++.++|.++|+.++.+++ .+ .++... . .++ ...+....+ .+...
T Consensus 367 ~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~--~~-~l~~~~--~-~~~--------~~~~~~~~~-------~~~~~ 425 (695)
T 2bkl_A 367 NLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK--SE-LWAKVD--V-PMN--------PEQYQVEQV-------FYASK 425 (695)
T ss_dssp CCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC--EE-EEEECC--C-SSC--------GGGEEEEEE-------EEECT
T ss_pred EeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc--EE-EEecCC--C-CCC--------HHHCeEEEE-------EEECC
Confidence 456778999999999999999999999986553 11 111111 0 111 111222222 34566
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++++++.|++....++.|+||++|||++......|......|+++||+|+++|+||++++|..|............
T Consensus 426 dg~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~ 505 (695)
T 2bkl_A 426 DGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNV 505 (695)
T ss_dssp TSCEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHH
T ss_pred CCCEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCc
Confidence 78999999999987656678999999999887765556766677788999999999999999999998766555555667
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+...... ......++.
T Consensus 506 ~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~--~~~~~~~g~--- 580 (695)
T 2bkl_A 506 FDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSG--RTWIPEYGT--- 580 (695)
T ss_dssp HHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTG--GGGHHHHCC---
T ss_pred HHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCC--cchHHHhCC---
Confidence 899999999999998889999999999999999999999999999999999999887654332211 111122221
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCccCCC
Q 004141 677 DSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~ 751 (771)
....+....+...+|+.++.+++ +|+||+||++|.+||+.++.+++++|+. .|.++++++++++||++..
T Consensus 581 -----~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gH~~~~ 655 (695)
T 2bkl_A 581 -----AEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQNSPGNPATALLRIEANAGHGGAD 655 (695)
T ss_dssp -----TTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHTSTTCCSCEEEEEETTCBTTBCS
T ss_pred -----CCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhhccCCCCEEEEEeCCCCcCCCC
Confidence 11234556677889999998876 7999999999999999999999999998 6789999999999999854
Q ss_pred C-CChHHHHHHHHHHHHHhhC
Q 004141 752 P-QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~-~~~~~~~~~i~~fl~~~L~ 771 (771)
+ ....+.+..+++||.++|+
T Consensus 656 ~~~~~~~~~~~~~~fl~~~l~ 676 (695)
T 2bkl_A 656 QVAKAIESSVDLYSFLFQVLD 676 (695)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHcC
Confidence 3 3345678889999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=477.79 Aligned_cols=598 Identities=18% Similarity=0.228 Sum_probs=411.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.+..||||++|+|... ..||++++.+.. ...++++... ..+..++|||||++|||+++.
T Consensus 113 ~~~~SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~----- 172 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGR----- 172 (741)
T ss_dssp CCEECTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETT-----
T ss_pred eeEECCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCC-----
Confidence 4456889999999864 478888874331 0445554443 457889999999999999753
Q ss_pred eEEEEe-cCCcceEEEecCCc-c----cccccCC--CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCC
Q 004141 125 IQFELW-SQSQLEKEFHVPQT-V----HGSVYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 196 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~-~----~g~~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (771)
++++++ .+++..+++..... + ...++.+ +....++|||||++|+|.+.+..... .+... ..... .
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~~~~~-----~~~p~-~ 245 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-VQKRY-----EVYAD-R 245 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-EEEEE-----EECSS-C
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-eEecC-----CCCCC-c
Confidence 477777 55555554432211 0 0000000 01257999999999999876542211 00000 00000 0
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccC-CceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004141 197 SWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
.....+.|... |+ ......|+++|+++ ++.+.+... .....+..++| |||+. |++.+....
T Consensus 246 ~~~~~~~~~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~----l~~~~~~~~-------- 308 (741)
T 2ecf_A 246 TDVIEQRYPAA-GD---ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH----LSFQRQSRD-------- 308 (741)
T ss_dssp EEEEEEECCBT-TS---CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE----EEEEEEETT--------
T ss_pred ccceEeecCCC-CC---CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE----EEEEEeccc--------
Confidence 00001111111 11 11235899999999 988777311 23446778999 99999 998874221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc-----cccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-----~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
.....|+++|+ .+++.+.+..... .+..+.|||||+ ++|.+..+ | ..
T Consensus 309 --~~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~----g----~~ 360 (741)
T 2ecf_A 309 --QKKLDLVEVTL-----------------ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT----G----FQ 360 (741)
T ss_dssp --SSEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT----S----SC
T ss_pred --CCeEEEEEEEC-----------------CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC----C----cc
Confidence 12348999998 7777666543322 346899999999 66766553 2 46
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC-ccccCCCEEEEEeeeCC--eeEEEEEECCCCcEE
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGS--SQVIISVNVSSGELL 426 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~-~~s~Dg~~l~~~~~~~~--~~~l~~~d~~tg~~~ 426 (771)
+||.+|+.++ .+.++..... +..+ .|||||+.|++.+..++ ..+||.++.+++..+
T Consensus 361 ~l~~~~~~~~-~~~l~~~~~~--------------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 361 HLYRIDSKGK-AAALTHGNWS--------------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp EEEEECSSSC-EEESCCSSSC--------------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EEEEEcCCCC-eeeeeecceE--------------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 7999987655 4444332211 2233 59999999998887665 678999998777788
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhh-ccccC--cc-eee
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS-LLSSR--QF-SIM 502 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~-~~~ 502 (771)
+|+... ......||+||+.|++..+++..|+++++.+...+. +. .+. ..+..+.. .+... .+ ...
T Consensus 420 ~l~~~~-~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~----~~--~l~----~~~~~~~~~~~~~~~~~~~~~~ 488 (741)
T 2ecf_A 420 RLSKAP-GMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK----IA--TLV----ENDLADPKHPYARYREAQRPVE 488 (741)
T ss_dssp ECCCSC-SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE----EE--CSS----CCCSSSTTSTTHHHHTTCCCEE
T ss_pred ecccCC-CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe----EE--Eec----cCcccccccchhhhhccCCCcE
Confidence 888733 345678999999999999999999999998864321 11 111 11100000 01111 11 111
Q ss_pred eecccCcccccccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-Ccch-----HHHHHHHHCCcEEEEECCC
Q 004141 503 KIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 503 ~~~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~-----~~~~~la~~G~~Vv~~d~r 575 (771)
.+ .+...+| .+++++++.|++....++.|+||++||++..... ..|. ..++.|+++||.|+++|+|
T Consensus 489 ~~-------~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~r 561 (741)
T 2ecf_A 489 FG-------TLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNR 561 (741)
T ss_dssp EE-------EEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECCT
T ss_pred EE-------EEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEecC
Confidence 12 3445678 8999999999876556778999999998876421 2343 5788899999999999999
Q ss_pred CCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 576 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 576 G~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
|.++++..+.......++...++|+.++++++.+++.++.++|+|+||||||++++.++.++|++++++|+.+|+.++..
T Consensus 562 G~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 641 (741)
T 2ecf_A 562 GTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWGL 641 (741)
T ss_dssp TCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGGG
T ss_pred CCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchhh
Confidence 99888887776666667777799999999999998778889999999999999999999999999999999999877542
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
+. ..+.+.+ ...+ ......+...+|...+.++++|+|++||++|.++|++++++++++++..++
T Consensus 642 ~~-------~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~ 705 (741)
T 2ecf_A 642 YD-------SHYTERY--------MDLP-ARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQKRGQ 705 (741)
T ss_dssp SB-------HHHHHHH--------HCCT-GGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHHTTC
T ss_pred hc-------cccchhh--------cCCc-ccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHHCCC
Confidence 21 0111111 1111 234556667889999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++++++++++|.+..... .++++.+.+||+++|+
T Consensus 706 ~~~~~~~~~~~H~~~~~~~-~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 706 PFELMTYPGAKHGLSGADA-LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp CCEEEEETTCCSSCCHHHH-HHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCCCCCch-hHHHHHHHHHHHHhcC
Confidence 9999999999999874433 6788999999999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=475.36 Aligned_cols=607 Identities=14% Similarity=0.145 Sum_probs=405.4
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc---cceeecCCccccccceEEEeCCCCCeEEEEecCCC
Q 004141 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 121 (771)
..+..||||++|+|.......-+......++++++.++ +. .+++ ..+..++|||||++|||+++.
T Consensus 63 ~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~~~~l~--------~~~~~~~~SPDG~~la~~~~~-- 130 (719)
T 1z68_A 63 SNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVRGNELP--------RPIQYLCWSPVGSKLAYVYQN-- 130 (719)
T ss_dssp SEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECCSSCCC--------SSBCCEEECSSTTCEEEEETT--
T ss_pred eeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--ccccceecC--------cccccceECCCCCEEEEEECC--
Confidence 34566899999999876432111123468888886433 33 3332 246789999999999999753
Q ss_pred CCCeEEEEe-cCCcceEEEecCCc------ccccccCCC---cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 122 ESPIQFELW-SQSQLEKEFHVPQT------VHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 122 ~~~~~~~~~-~~~~~~~~~~~~~~------~~g~~~~~~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
.++..+ .++...+++..... ....+|.++ ....++|||||++|||.+.+..... .+........
T Consensus 131 ---~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~-~~~~~~~~~~-- 204 (719)
T 1z68_A 131 ---NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIP-VIAYSYYGDE-- 204 (719)
T ss_dssp ---EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSC-EEEEEECCSS--
T ss_pred ---eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCc-eEEeeccCCC--
Confidence 466665 45555555432110 001111111 1148999999999999886532211 1110000000
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccC----CCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKG----IPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~----~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
.......+.|... |. ......|++||+++++.. .+.. ......+..++|||||+ ++|+...
T Consensus 205 ---~~~~~~~~~yp~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~-----~~~~~~~ 272 (719)
T 1z68_A 205 ---QYPRTINIPYPKA-GA---KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER-----VCLQWLK 272 (719)
T ss_dssp ---SSCEEEEEECCBT-TS---CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE-----EEEEEEE
T ss_pred ---CCccceeecCCCC-CC---CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe-----EEEEEec
Confidence 0000011122111 11 113358999999998753 4410 11334567899999965 6665321
Q ss_pred CcceeeeeeeeccCCceeEEEe----cccccchhhhhhhhcCCCCCCcceecC-----CCCcccc-----ceeecCCCCE
Q 004141 265 SETRKLGIKYCYNRPCALYAVR----VSLYKSEASELELKESSSEDLPVVNLT-----ESISSAF-----FPRFSPDGKF 330 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~lt-----~~~~~~~-----~p~~SpDG~~ 330 (771)
.. .....||++| + .+++.+.++ .+...+. .|.|||||+.
T Consensus 273 ~~----------~~~~~l~~~d~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 273 RV----------QNVSVLSICDFREDW-----------------QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp SS----------TTEEEEEEEEECSSS-----------------SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred cc----------cCeEEEEEEcccCCC-----------------CCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 11 1223799999 6 667766666 2333344 8999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~- 409 (771)
|+|..... .+..+|+++|+.+++.++++..... +..+.++ ||+.|+|.+..
T Consensus 326 l~~~~~~~-------~g~~~l~~~~~~~~~~~~lt~~~~~--------------------v~~~~~~-d~~~i~~~~~~~ 377 (719)
T 1z68_A 326 YYKIFSDK-------DGYKHIHYIKDTVENAIQITSGKWE--------------------AINIFRV-TQDSLFYSSNEF 377 (719)
T ss_dssp EEEEEECT-------TSCEEEEEESSCSTTCEECSCSSSC--------------------EEEEEEE-CSSEEEEEESCG
T ss_pred EEEEEEcc-------CCceEEEEEECCCCceEecccCceE--------------------EEEEEEE-eCCEEEEEEecC
Confidence 99965543 1246799999988776555543211 1123455 89999998876
Q ss_pred ---CCeeEEEEEECCCC--cEEEecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccC
Q 004141 410 ---GSSQVIISVNVSSG--ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVS 480 (771)
Q Consensus 410 ---~~~~~l~~~d~~tg--~~~~l~~~----~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~ 480 (771)
.+..+||.+++++| +.++++.. ...+....|++|++.+++.+++++.| .+++.++.+++ .+.
T Consensus 378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~---~~~----- 448 (719)
T 1z68_A 378 EEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQ---EIK----- 448 (719)
T ss_dssp GGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCC---EEE-----
T ss_pred CCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCC---EEE-----
Confidence 56789999998777 46777642 22345678999999999999999887 57777765442 111
Q ss_pred CCCCCCchhhhhccccCcc-eeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcch-H
Q 004141 481 SPISRCPEKVKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-K 557 (771)
Q Consensus 481 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~-~ 557 (771)
+.+.++.+...+....+ ....+ ++...+ .+++++++.|+++...++.|+||++||++.... ...|. .
T Consensus 449 --~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~ 518 (719)
T 1z68_A 449 --ILEENKELENALKNIQLPKEEIK-------KLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVN 518 (719)
T ss_dssp --EEECCHHHHHHTTSBCCCEEEEE-------EEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCCC
T ss_pred --EeecchhhhhhhccccCCceEEE-------EEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchhh
Confidence 11223333222333222 11112 233344 889999999987666778999999999887643 22332 2
Q ss_pred HHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 558 SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 558 ~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
....| +++||.|+++|+||+++++..+.......++...++|+.++++++.+++.+|++||+|+||||||++++.++.+
T Consensus 519 ~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~ 598 (719)
T 1z68_A 519 WISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALAS 598 (719)
T ss_dssp HHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTT
T ss_pred HHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHh
Confidence 34444 47999999999999999888877666667777789999999999999877889999999999999999999999
Q ss_pred CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCC-hhhHHHHhhcCcccccCCCCC-cEEEEeeCC
Q 004141 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKT-PTIFLLGAQ 714 (771)
Q Consensus 637 ~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~-P~lii~G~~ 714 (771)
+|++++++|+.+|+.++..+. ..+.+.+ .+.+. .+....+...+|...+.++++ |+|++||++
T Consensus 599 ~p~~~~~~v~~~~~~~~~~~~-------~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~ 663 (719)
T 1z68_A 599 GTGLFKCGIAVAPVSSWEYYA-------SVYTERF--------MGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTA 663 (719)
T ss_dssp SSSCCSEEEEESCCCCTTTSB-------HHHHHHH--------HCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEETT
T ss_pred CCCceEEEEEcCCccChHHhc-------cccchhh--------cCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEeCC
Confidence 999999999999988654320 0111111 01111 233456677788888999988 899999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|.++|++++++++++|+..+++++++++|+++|.+ ..+...++++.+.+||+++|+
T Consensus 664 D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~gH~~-~~~~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 664 DDNVHFQNSAQIAKALVNAQVDFQAMWYSDQNHGL-SGLSTNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp CSSSCTHHHHHHHHHHHHTTCCCEEEEETTCCTTC-CTHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHCCCceEEEEECcCCCCC-CcccHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999998 444566888999999999985
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=466.91 Aligned_cols=587 Identities=14% Similarity=0.125 Sum_probs=403.1
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCCCccceeecC-Ccccc-ccceEEEeCCCCCeEEEEecCCCC-
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENENSVTFQWAP-FPVEM-TGASAVVPSPSGSKLLVVRNPENE- 122 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lt~~~-~~~~~-~~~~~~~~SPdG~~la~~~~~~~~- 122 (771)
+..++||++++|...... .....||+.+... ++++..+|.... +.... .....++|||||++|||.+...+.
T Consensus 112 ~~p~pdG~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 112 GLPQRRGASVFYSWNSGL----MNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp CCCEEETTEEEEEEECSS----CSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CCCEEECCEEEEEEEcCC----CeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 344579999999986432 3356788866421 033445543322 11110 246789999999999999876532
Q ss_pred CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004141 123 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
..++++++ .+++.......... +..++|||| +.|+|.+.+.....
T Consensus 188 ~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~wspD-~~l~~~~~~~~~~~----------------------- 233 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLADELKWVK----------FSGLAWLGN-DALLYSRFAEPKEG----------------------- 233 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEE----------SCCCEESTT-SEEEEEECCCC--------------------------
T ss_pred eEEEEEEECCCCCCCCccCCCce----------eccEEEECC-CEEEEEEecCcccc-----------------------
Confidence 25677777 56655433211111 148899999 99999875542100
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCce--eeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004141 202 GDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
++.........||++++.++.. +.+...+. ......+.|||||+. |+|.+.... +.
T Consensus 234 -------~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~----------~~ 292 (741)
T 1yr2_A 234 -------QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW----VVITSSEGT----------DP 292 (741)
T ss_dssp ------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECTT----------CS
T ss_pred -------cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE----EEEEEEccC----------CC
Confidence 0000011246899999988763 23311112 123668899999999 999885331 12
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCC--c-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
..+||++|+ +++ + .++|+........+ ++|||++|+|.++.. ....+|+++|
T Consensus 293 ~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~-------~~~~~l~~~d 347 (741)
T 1yr2_A 293 VNTVHVARV-----------------TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG-------APLKKIVRVD 347 (741)
T ss_dssp CCEEEEEEE-----------------ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT-------CTTCEEEEEE
T ss_pred cceEEEEEC-----------------CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC-------CCCCEEEEEe
Confidence 358999998 555 6 77787665555556 469999999999874 2356899999
Q ss_pred cCCCC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-C
Q 004141 356 WPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-E 432 (771)
Q Consensus 356 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~ 432 (771)
+.++. .+.++.... . .+..+.|+ +..|+++...++..+||.++++++..+.++.+ .
T Consensus 348 ~~~~~~~~~~l~~~~~-----------~--------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~ 406 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESK-----------D--------NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGI 406 (741)
T ss_dssp CSSSSCEEEEEECCCS-----------S--------EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSS
T ss_pred CCCCccccEEEecCCC-----------C--------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCC
Confidence 87642 122211110 0 12233455 55788888888999999999877767777653 3
Q ss_pred CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccc
Q 004141 433 SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSAN 512 (771)
Q Consensus 433 ~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 512 (771)
+.+....++++++.+++..++.++|.++|+.++.+++ .+ .+..+...++ ...+....+ .
T Consensus 407 ~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~--~~----~l~~~~~~~~--------~~~~~~~~~-------~ 465 (741)
T 1yr2_A 407 GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK--TT----PWEPVHLTFD--------PADFRVEQV-------F 465 (741)
T ss_dssp CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE--EE----ECSCCCCSSC--------GGGEEEEEE-------E
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc--EE----EEecCCCCCC--------hhHCEEEEE-------E
Confidence 3344556788999999999999999999999986543 11 1111111111 111222222 3
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.+++++++.|++. .++.|+||++|||++......|......|+++||+|+++|+||++++|..|........
T Consensus 466 ~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~ 543 (741)
T 1yr2_A 466 YPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRDK 543 (741)
T ss_dssp EECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGGG
T ss_pred EEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhhc
Confidence 4556789999999999854 56789999999998876666777778889999999999999999999998876555555
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
+...++|+.+++++|++++.++++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........| ...++
T Consensus 544 ~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~g 621 (741)
T 1yr2_A 544 KQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYW--VDDYG 621 (741)
T ss_dssp THHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGG--HHHHC
T ss_pred CCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchh--HHHcC
Confidence 5567899999999999998889999999999999999999999999999999999999887654332211111 12222
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCC-CCC-cEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCc
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISK-VKT-PTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVH 747 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~-P~lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H 747 (771)
. ....+....+...+|+.++.. +++ |+||+||++|.+||+.++.+++++|+. .|.++++++++++||
T Consensus 622 ~--------~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~~~~~g~~~~l~~~~~~gH 693 (741)
T 1yr2_A 622 Y--------PEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQTAAIGPKPHLIRIETRAGH 693 (741)
T ss_dssp C--------TTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHHSCCCSSCEEEEEC-----
T ss_pred C--------CCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhhhhcCCCCEEEEEeCCCCc
Confidence 1 112355666788899999987 884 999999999999999999999999999 889999999999999
Q ss_pred cCCCCC-ChHHHHHHHHHHHHHhhC
Q 004141 748 GIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~-~~~~~~~~i~~fl~~~L~ 771 (771)
++..+. ...+.+..+.+||.++|+
T Consensus 694 ~~~~~~~~~~~~~~~~~~fl~~~l~ 718 (741)
T 1yr2_A 694 GSGKPIDKQIEETADVQAFLAHFTG 718 (741)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 976542 335778899999999874
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=461.93 Aligned_cols=603 Identities=15% Similarity=0.129 Sum_probs=411.5
Q ss_pred HHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccc-cccceEEEe
Q 004141 28 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE-MTGASAVVP 106 (771)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~-~~~~~~~~~ 106 (771)
.+|++++..+-... -.+..+.+|.+..|.+.... .....+|+... .++..+.|....+..+ ......++|
T Consensus 66 ~~l~~~~~~~~~~~---~~~~p~~~g~~~y~~~~~~~----~~~~~~~r~~~--~~~~~vllD~n~la~~~~~~l~~~~~ 136 (693)
T 3iuj_A 66 AAIKEKLAASWNYA---KEGAPFREGRYHYFFKNDGL----QNQNVLWRQQE--GKPAEVFLDPNTLSPDGTTALDQLSF 136 (693)
T ss_dssp HHHHHHHHHHSCCC---EECCCEEETTEEEEEEECSS----CSSCEEEEECT--TSCCEEEECGGGGSTTSCCEEEEEEE
T ss_pred HHHHHHHHHhhccc---cCCCCEEECCEEEEEEEcCC----CceeEEEEeCC--CCCcEEEEehhhccCCCcEEEEEEEE
Confidence 34555555433221 12333457888888765322 22334554321 2212122211111111 123567899
Q ss_pred CCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 107 SPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 107 SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
||||++|||..+..+ +...+++++ .+++....+. .... +..++|| ||+.|+|.+.+.....
T Consensus 137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k---------~~~~~Ws-Dg~~l~y~~~~~~~~~------ 199 (693)
T 3iuj_A 137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVK---------FSGISWL-GNEGFFYSSYDKPDGS------ 199 (693)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEE---------SCCCEEE-TTTEEEEEESSCCC--------
T ss_pred CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCce---------eccEEEe-CCCEEEEEEecCcccc------
Confidence 999999999987653 235677777 5565443321 1110 1588999 9999999986642100
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCC--CCccceEEEecCCCCCccEEEE
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK--SLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~--~~~~~~~~wspDg~~~~~~l~~ 260 (771)
+.-......+||++++.++.. +.+...+. .....++.|||||+. |++
T Consensus 200 -------------------------~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~----l~~ 250 (693)
T 3iuj_A 200 -------------------------ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF----LLI 250 (693)
T ss_dssp ------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE----EEE
T ss_pred -------------------------cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE----EEE
Confidence 000011346899999987653 33411111 223457899999999 998
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.+.... ..++||++|+ +++ +.++|+........+ |++||++|+|.++.+
T Consensus 251 ~~~~~~-----------~~~~i~~~d~-----------------~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~ 301 (693)
T 3iuj_A 251 SAANST-----------SGNRLYVKDL-----------------SQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRD 301 (693)
T ss_dssp EEESSS-----------SCCEEEEEET-----------------TSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred EEccCC-----------CCcEEEEEEC-----------------CCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCC
Confidence 874322 2248999998 444 677887766655566 899999999999875
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
....+|+++|+.+++..... .+++ . .. .. . .|+++++.|++....++..+|+.+
T Consensus 302 -------~~~~~l~~~d~~~~~~~~~~----~l~~---~--~~--------~~-~-~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 302 -------APNRRLVTVDAANPGPAHWR----DLIP---E--RQ--------QV-L-TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp -------CTTCEEEEEETTSCCGGGCE----EEEC---C--CS--------SC-E-EEEEETTEEEEEEEETTEEEEEEE
T ss_pred -------CCCCEEEEEeCCCCCccccE----EEec---C--CC--------CE-E-EEEEECCEEEEEEEECCeeEEEEE
Confidence 22468999999876541110 1111 0 00 01 1 799999999999988888999999
Q ss_pred ECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccC
Q 004141 419 NVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSR 497 (771)
Q Consensus 419 d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 497 (771)
+++++..+.+.... +......++++++.+++..+++++|.++|++++.+++ .+ .++... ..+ ...
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~--~~-~l~~~~---~~~--------~~~ 421 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA--IS-LYRASA---APF--------KPE 421 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC--EE-EEECCC---SSC--------CGG
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe--EE-EEEeCC---CCc--------Chh
Confidence 99988888886543 2233345567899999999999999999999986543 11 111110 011 111
Q ss_pred cceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC
Q 004141 498 QFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS 577 (771)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~ 577 (771)
.+....+ .+...+|.+++++++.|++....++.|+||++|||++......|...+..|+++||+|+++|+||+
T Consensus 422 ~~~~~~~-------~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~RG~ 494 (693)
T 3iuj_A 422 DYVSEQR-------FYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAVANLRGG 494 (693)
T ss_dssp GEEEEEE-------EEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEEECCTTS
T ss_pred hCeeEEE-------EEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEEEeCCCC
Confidence 2223222 345668899999999999766677899999999998876677788888889999999999999999
Q ss_pred CCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 578 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
+++|..|............++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+.
T Consensus 495 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~d~~~~~ 574 (693)
T 3iuj_A 495 GEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYH 574 (693)
T ss_dssp STTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCCTTTGG
T ss_pred CccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcchhhhhc
Confidence 99999998776666666778999999999999988999999999999999999999999999999999999999876543
Q ss_pred cCCCCCcchhhhhccCCCCccCCCCCChhh-HHHHhhcCcccccCC-CCCc-EEEEeeCCCCccCcHHHHHHHHHHHhC-
Q 004141 658 GTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHSKSPISHISK-VKTP-TIFLLGAQDLRVPVSNGLQYARALREK- 733 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~-i~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~- 733 (771)
.......| ...++. ....+. ...+...+|+.++.+ +++| +||+||++|.+||+.++.+++++|+..
T Consensus 575 ~~~~~~~~--~~~~g~--------p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~~l~~~~ 644 (693)
T 3iuj_A 575 TFTAGTGW--AYDYGT--------SADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAATLQADN 644 (693)
T ss_dssp GSGGGGGC--HHHHCC--------TTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHHHHHHHC
T ss_pred cCCCchhH--HHHcCC--------ccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHHHHHhhC
Confidence 32111111 112221 112233 556778899999999 8987 999999999999999999999999998
Q ss_pred --CCCEEEEEeCCCCccCCCC-CChHHHHHHHHHHHHHhhC
Q 004141 734 --GVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 --g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~~~L~ 771 (771)
|+++++++++++||++..+ ....+.+..+.+||.++|+
T Consensus 645 ~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 685 (693)
T 3iuj_A 645 AGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMG 685 (693)
T ss_dssp CSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999998764 4456778899999999875
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=463.62 Aligned_cols=591 Identities=17% Similarity=0.229 Sum_probs=403.4
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
...|+| +.++|+.+ +.++++++. +++.++++... ..+..++|||||++|||+++. .+
T Consensus 87 ~~~spd-~~~~~~~~----------~~i~~~d~~--~~~~~~l~~~~-----~~~~~~~~SpdG~~la~~~~~-----~i 143 (706)
T 2z3z_A 87 TLDAGR-GLVVLFTQ----------GGLVGFDML--ARKVTYLFDTN-----EETASLDFSPVGDRVAYVRNH-----NL 143 (706)
T ss_dssp EEETTT-TEEEEEET----------TEEEEEETT--TTEEEEEECCT-----TCCTTCEECTTSSEEEEEETT-----EE
T ss_pred EEECCC-CeEEEEEC----------CEEEEEECC--CCceEEccCCc-----ccccCCcCCCCCCEEEEEECC-----eE
Confidence 345789 88888753 478887763 33555555433 446779999999999997542 47
Q ss_pred EEEe-cC-----CcceEEEecCCc-c-ccc-ccCC--CcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 127 FELW-SQ-----SQLEKEFHVPQT-V-HGS-VYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 127 ~~~~-~~-----~~~~~~~~~~~~-~-~g~-~~~~--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
++++ .+ ++.++++..... + .|. ++.+ .....++|||||++|+|.+.+..... .+............
T Consensus 144 ~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~~~~~~~~~~~~~~-- 220 (706)
T 2z3z_A 144 YIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-PTPIVDYHPLEAES-- 220 (706)
T ss_dssp EEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-CEEEEECCSSSCEE--
T ss_pred EEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-eEEeeccCCCCCce--
Confidence 7666 45 555555443221 0 000 0000 01258999999999999874432211 11100000000000
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC-CCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~-~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
....|... |. ......|++||+++++.+.+... .....+..++|||||+. |++.+....
T Consensus 221 ----~~~~y~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~-------- 280 (706)
T 2z3z_A 221 ----KPLYYPMA-GT---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI----LYVAEVNRA-------- 280 (706)
T ss_dssp ----EEECCCBT-TS---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE----EEEEEECTT--------
T ss_pred ----EEeeCCCC-CC---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE----EEEEEeCCC--------
Confidence 00011111 11 12347899999999998777311 23345778999999998 988763221
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCC--Cc---cccceeecC--CCCEEEEEecCCCCCCCCcc
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTES--IS---SAFFPRFSP--DGKFLVFLSAKSSVDSGAHS 346 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~--~~---~~~~p~~Sp--DG~~l~f~~~~~~~~~g~~~ 346 (771)
+....|+++|+ .++ ..+.+... .. ....+.||| ||+.| +.+..+ |
T Consensus 281 --~~~~~v~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~----g--- 333 (706)
T 2z3z_A 281 --QNECKVNAYDA-----------------ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD----G--- 333 (706)
T ss_dssp --SCEEEEEEEET-----------------TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT----S---
T ss_pred --CCeeEEEEEEC-----------------CCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC----C---
Confidence 12237999998 666 44444321 11 135789999 99854 555443 2
Q ss_pred ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCC--eeEEEEEECCCC
Q 004141 347 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGS--SQVIISVNVSSG 423 (771)
Q Consensus 347 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~~s~Dg~~l~~~~~~~~--~~~l~~~d~~tg 423 (771)
..+||.++..++..+.++.... .+.. +.|+|||+.|++.+..++ ...||.++++++
T Consensus 334 -~~~l~~~~~~~~~~~~l~~~~~--------------------~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 334 -WNHLYLYDTTGRLIRQVTKGEW--------------------EVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp -SCEEEEEETTSCEEEECCCSSS--------------------CEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred -ccEEEEEECCCCEEEecCCCCe--------------------EEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 4678988866544444432211 1122 579999999998887654 568999999999
Q ss_pred cEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeee
Q 004141 424 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK 503 (771)
Q Consensus 424 ~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 503 (771)
+.++++.... +....||+||+.+++.+++.+.|.++++.++.+++ ... ++ ..+ .+.. ......+.
T Consensus 393 ~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~----~~~--~~----~~~-~~~~-~~~~~~~~-- 457 (706)
T 2z3z_A 393 KTKDLTPESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS----HTL--LE----AKN-PDTG-YAMPEIRT-- 457 (706)
T ss_dssp CCEESCCSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE----EEE--EE----CC--------CCCCEEE--
T ss_pred CceeccCCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe----Eee--cc----ccc-hhhh-cCCCCcEE--
Confidence 9888875433 55678999999999999999999999999876542 111 11 001 1100 00111111
Q ss_pred ecccCcccccccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchH----HHHHHHHCCcEEEEECCCCC
Q 004141 504 IPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSK----SLAFLSSVGYSLLIVNYRGS 577 (771)
Q Consensus 504 ~~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~----~~~~la~~G~~Vv~~d~rG~ 577 (771)
..+...+| .+++++++.|+++++.+++|+||++|||++.... ..|.. .++.|+++||.|+++|+||.
T Consensus 458 -------~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~rG~ 530 (706)
T 2z3z_A 458 -------GTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGS 530 (706)
T ss_dssp -------EEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCTTC
T ss_pred -------EEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecCCC
Confidence 23445567 8999999999876666788999999998876532 24443 57889999999999999999
Q ss_pred CCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 578 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
++++..+.......++...++|+.++++++.+++.++.+|++|+||||||++++.++.++|++++++|+.+|+.++..+.
T Consensus 531 g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~ 610 (706)
T 2z3z_A 531 ANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYA 610 (706)
T ss_dssp SSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGGSB
T ss_pred cccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHHHH
Confidence 88888777666667777778999999999988877889999999999999999999999999999999999987754221
Q ss_pred cCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004141 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
..+.+.+ ...+ ......+...+|...+.++++|+|++||++|.++|++++++++++|+..++++
T Consensus 611 -------~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~~~~~~ 674 (706)
T 2z3z_A 611 -------IMYGERY--------FDAP-QENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACVKARTYP 674 (706)
T ss_dssp -------HHHHHHH--------HCCT-TTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCC
T ss_pred -------hhhhhhh--------cCCc-ccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHCCCCe
Confidence 0111111 1112 23345667778888999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++++|+++|.+... ...++++.+.+||+++|
T Consensus 675 ~~~~~~~~gH~~~~~-~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 675 DYYVYPSHEHNVMGP-DRVHLYETITRYFTDHL 706 (706)
T ss_dssp EEEEETTCCSSCCTT-HHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCCCCCcc-cHHHHHHHHHHHHHHhC
Confidence 999999999998765 56688999999999886
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=447.62 Aligned_cols=598 Identities=14% Similarity=0.095 Sum_probs=404.7
Q ss_pred HHHHHHHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeec-CCC--C-ccceeecCCccccc--c
Q 004141 27 LSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENE--N-SVTFQWAPFPVEMT--G 100 (771)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~lt~~~~~~~~~--~ 100 (771)
-.+||+++...-..... ....++|.+++|+.... ++....+++.+... .++ . .+.+....+....+ .
T Consensus 103 ~~~l~~e~~~~~~~~~~---~~p~~~g~~~yy~~~~~----g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~ 175 (751)
T 2xe4_A 103 RDDIYAEHISHINEDDM---SAPYVYGKYRYYTREVK----GKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCD 175 (751)
T ss_dssp HHHHHHHHHHTSCSSEE---CCCEEETTEEEEEEECT----TCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCE
T ss_pred HHHHHHHHHHhcccccC---CCCeEECCEEEEEEECC----CCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEE
Confidence 34566776655443331 11124889999986532 22234455544210 222 2 22222211110001 3
Q ss_pred ceEEEeC-CCCCeEEEEecCCC-CCCeEEEEe-cCC-cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPS-PSGSKLLVVRNPEN-ESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~S-PdG~~la~~~~~~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++|| |||++|||+.+..+ +..++++++ .++ +. +.. ... +.+.+++|||||+.|+|++.+...
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~--l~~---~~~------~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT--IAD---KVS------GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC--CCC---CEE------EECSCCEECSSTTEEEEEEECTTC
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe--CCc---ccc------CceeeEEEecCCCEEEEEEECCCC
Confidence 5679999 99999999988653 234588888 555 31 111 000 012589999999999998654210
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~ 254 (771)
...+||++++.+++. +.+...+......++.|||||+.
T Consensus 245 ---------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~- 284 (751)
T 2xe4_A 245 ---------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT- 284 (751)
T ss_dssp ---------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE-
T ss_pred ---------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE-
Confidence 125899999988753 23310122223457899999999
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cc--eecCCCCccccceeecCC---
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PV--VNLTESISSAFFPRFSPD--- 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~--~~lt~~~~~~~~p~~SpD--- 327 (771)
|+|.++.. ..++||++|+ +++ +. +.|+... ..+.||||
T Consensus 285 ---l~~~~~~~------------~~~~l~~~d~-----------------~~~~~~~~~~~l~~~~---~~~~~s~~~~~ 329 (751)
T 2xe4_A 285 ---LCIGSQSP------------ETAEVHLLDL-----------------RKGNAHNTLEIVRPRE---KGVRYDVQMHG 329 (751)
T ss_dssp ---EEEEEECS------------SCEEEEEEES-----------------SSCTTCCCEEESSCCC---TTCCEEEEEET
T ss_pred ---EEEEecCC------------CCceEEEEEC-----------------CCCCCCceeEEeecCC---CCceEEEeeee
Confidence 99988532 2348999998 443 45 6666543 35567777
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCC-CCCC-CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|+.|+|.++.+ + ....+|+++|+.+. +.+. +.....++ .+. .|+.+++.|++
T Consensus 330 g~~l~~~t~~~----~--a~~~~L~~~d~~~~~~~~~~li~~~~~~------------------~l~--~~~~~~~~lv~ 383 (751)
T 2xe4_A 330 TSHLVILTNEG----G--AVNHKLLIAPRGQPSDWSHVLVDHSEDV------------------FME--SIAVRSNYLVV 383 (751)
T ss_dssp TTEEEEEECTT----T--CTTCEEEEEETTSTTCCCCEEECCCSSE------------------EEE--EEEECSSEEEE
T ss_pred CCEEEEEeCCC----C--CCCcEEEEEcCCCcccceeeEECCCCCc------------------EEE--EEEEECCEEEE
Confidence 99999999874 1 23578999998752 3232 22111000 011 24556778999
Q ss_pred EeeeCCeeEEEEEEC-------CCCc-EEEecCCCCCceeeEE------eecCCEEEEEEeCCCCCCeEEEEEecccCCC
Q 004141 406 SSIWGSSQVIISVNV-------SSGE-LLRITPAESNFSWSLL------TLDGDNIIAVSSSPVDVPQVKYGYFVDKANK 471 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~-------~tg~-~~~l~~~~~~~~~~~~------s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~ 471 (771)
....++...|+.+++ ++++ .+.|+..... ....+ +.+++.+++..+++++|+++|++++.+++
T Consensus 384 ~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~-~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~-- 460 (751)
T 2xe4_A 384 AGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPI-FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS-- 460 (751)
T ss_dssp EEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSS-CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC--
T ss_pred EEEeCCEEEEEEEecccccccccCCccceEECCCCce-eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc--
Confidence 999999999999996 6777 7888644332 22234 45888999999999999999999876543
Q ss_pred ceeeeeccCCCCC-CCchhhhhccccCcceeeeecccCcccccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC
Q 004141 472 GTWSWLNVSSPIS-RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV 550 (771)
Q Consensus 472 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~ 550 (771)
. ..++.. +.. .++ ...+....+ .+...+|.+++++++.|++....++.|+||++|||++..
T Consensus 461 ~-~~l~~~--~~~~~~~--------~~~~~~~~~-------~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~ 522 (751)
T 2xe4_A 461 R-TAVKVR--EVGGGFD--------AANYKVERR-------FATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLS 522 (751)
T ss_dssp E-EEEEEC--CCCTTCC--------GGGEEEEEE-------EEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCC
T ss_pred E-EEEecc--ccccCCC--------ccceEEEEE-------EEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcC
Confidence 1 111111 110 111 111222222 445667899999999998765567899999999998776
Q ss_pred CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHH
Q 004141 551 SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFL 629 (771)
Q Consensus 551 ~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~-~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~ 629 (771)
....|...+..|+++||+|+++|+||++++|..|.. .....++...++|+.+++++|++++.+|++||+|+|+|+||++
T Consensus 523 ~~~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l 602 (751)
T 2xe4_A 523 MDPQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLL 602 (751)
T ss_dssp CCCCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHH
T ss_pred CCCcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHH
Confidence 555676677788999999999999999999999877 6555566678999999999999998899999999999999999
Q ss_pred HHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCc-EE
Q 004141 630 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TI 708 (771)
Q Consensus 630 a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~l 708 (771)
++.++.++|++|+++|+.+|+.++..+......+... ..+ ..+......+....+...+|+.++.++++| +|
T Consensus 603 a~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~--~~~-----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~L 675 (751)
T 2xe4_A 603 MGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTT--GEW-----EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIM 675 (751)
T ss_dssp HHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHH--HHT-----TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEE
T ss_pred HHHHHHhCchheeEEEEeCCcchHHhhhcccCcccch--hhH-----HHcCCCCCHHHHHHHHhcChhhhhccCCCCcee
Confidence 9999999999999999999999887654322222110 011 011111123344566788999999999997 99
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCC---CEEEEEeCCCCccCCCCC-ChHHHHHHHHHHHHHhhC
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGV---ETKVIVFPNDVHGIERPQ-SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~~H~~~~~~-~~~~~~~~i~~fl~~~L~ 771 (771)
|+||++|.+||+.++.+++++|+..++ .+.+.++++++|++.... ...+.+..+.+||.++|+
T Consensus 676 ii~G~~D~~vp~~~~~~~~~~L~~~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~ 742 (751)
T 2xe4_A 676 VQCGLHDPRVAYWEPAKWVSKLRECKTDNNEILLNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLK 742 (751)
T ss_dssp EEEETTCSSSCTHHHHHHHHHHHHHCCSCCCEEEEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999854 556777799999987543 334566789999999875
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=360.00 Aligned_cols=468 Identities=13% Similarity=0.131 Sum_probs=326.1
Q ss_pred ceEEEEEccCCc--eeec-cCCCCCCccceEEEecCCCCCccEE---EEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 218 PSLFVININSGE--VQAV-KGIPKSLSVGQVVWAPLNEGLHQYL---VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 218 ~~l~v~d~~~~~--~~~l-~~~~~~~~~~~~~wspDg~~~~~~l---~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
..+|.+.+.+.. -+.+ .+...+.. -++.-++|++. . ++++...+ ...+++|.++++.
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~-~~~~~~~~~~~----~~~~~~i~~~~~----------~~~~~~~~~~~~~-- 278 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIY-VSAGKLLSDTI----SSSLIFISANKD----------FYNYDNYILDTKY-- 278 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCE-EEEEESSCTTT----CSSEEEEEEESS----------SSCEEEEEEECSS--
T ss_pred CEEEEEECCCChHHCeEEeccCCCceE-EEEEEecCCCc----eEEEEEEEEecc----------cCceeEEEEcCCC--
Confidence 578888876652 2222 21222222 23455778775 3 33331111 1235899998621
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-----C---C
Q 004141 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-----F---S 363 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-----~---~ 363 (771)
..++.++|.... ...+.++++|+.++++..+... .|......+|+.+|+++... . .
T Consensus 279 -------------~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 342 (711)
T 4hvt_A 279 -------------KNLKLQKINMPS--DATLQGSFKEYVFWLLRSDWKF-KSHNIKAGSLVALHFTDLLKTESDKTSLKI 342 (711)
T ss_dssp -------------SSCEEEECCSCT--TCEEEEEETTEEEEECSSCEEE-TTEEECTTCEEEEEGGGGGSCGGGCTTCEE
T ss_pred -------------CCCcceEeecCC--cceEeeeECCEEEEEECccccc-ccccCCCCeEEEEECCcccccccccccceE
Confidence 225556664332 2335677777654444333110 01112346799999876421 1 0
Q ss_pred -CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEE-ecCC-CCCceee
Q 004141 364 -SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR-ITPA-ESNFSWS 438 (771)
Q Consensus 364 -~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~-l~~~-~~~~~~~ 438 (771)
++...+ ..+..+.|+.| .|++....++...|+.+++.+|+ .+. +..+ .+.+...
T Consensus 343 ~~~~~~~-------------------~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~ 401 (711)
T 4hvt_A 343 LFTPTAN-------------------EVFNFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGM 401 (711)
T ss_dssp EECCCTT-------------------EEEEEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEE
T ss_pred EECCCCC-------------------CeEEEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEE
Confidence 111111 12345567765 58888888899999999987774 445 4433 2334444
Q ss_pred EEeecCCEEEEEEeCCCCCCeEEEEEecccCCCceeeeeccCCCCCCCchhhhhccccCcceeeeecccCcccccccCCC
Q 004141 439 LLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ 518 (771)
Q Consensus 439 ~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g 518 (771)
..+++++.+++..+++++|+++|++++. ++ . +.+..+ +. .+....+....+ .+...+|
T Consensus 402 ~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~--~----~~l~~~----~~----~~~~~~~~~e~v-------~~~s~DG 459 (711)
T 4hvt_A 402 SSYEEEEEALITIENSIVPPTIYLWVKT-HE--L----KIIRKA----LY----SFDSENYVLEQK-------EATSFDG 459 (711)
T ss_dssp ECCTTCSCEEEEEECSSSCCEEEEECTT-SC--E----EEEECC----SS----CCCGGGEEEEEE-------EEECTTS
T ss_pred eecCcCCEEEEEEecCCCCCEEEEEeCC-Cc--E----EEEecC----Cc----ccCcccCeeEEE-------EEECCCC
Confidence 4567888999999999999999999875 32 1 111111 11 011222222222 4556789
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+++++++.|++....++.|+||++|||++......|.... +.|+++||+|+++|+||++++|..|.......++...+
T Consensus 460 ~~i~~~l~~P~~~~~~~~~P~vl~~HGG~~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~ 539 (711)
T 4hvt_A 460 VKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAF 539 (711)
T ss_dssp CEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHH
T ss_pred eEEEEEEEecCCCCCCCCccEEEEECCCCCCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcH
Confidence 99999999999776678899999999998877666776655 48899999999999999999999998887777788889
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
+|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+........|. ..++.
T Consensus 540 ~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~--~~~G~---- 613 (711)
T 4hvt_A 540 NDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWV--TEYGD---- 613 (711)
T ss_dssp HHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGH--HHHCC----
T ss_pred HHHHHHHHHHHHcCCCCcccEEEEeECHHHHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHH--HHhCC----
Confidence 999999999999998999999999999999999999999999999999999999876654432222221 22222
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCC--cEEEEeeCCCCccCcHHHHHHHHHH-HhCCCCEEEEEeCCCCccCCCCC-
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKT--PTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQ- 753 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~--P~lii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~~- 753 (771)
....+....+...||+.++.++++ |+||+||++|.+||+.++.+++++| +..|++++++++++++|++....
T Consensus 614 ----p~~~~~~~~l~~~SP~~~v~~i~~~pPvLii~G~~D~~Vp~~~s~~~~~aL~~~~g~pv~l~~~p~~gHg~~~~~~ 689 (711)
T 4hvt_A 614 ----PEIPNDLLHIKKYAPLENLSLTQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTYFLESKDSGHGSGSDLK 689 (711)
T ss_dssp ----TTSHHHHHHHHHHCGGGSCCTTSCCCEEEEEEETTCCSSCTHHHHHHHHHHTTCTTCCEEEEEESSCCSSSCSSHH
T ss_pred ----CcCHHHHHHHHHcCHHHHHhhcCCCCCEEEEecCCCCcCChHHHHHHHHHHHHHcCCCEEEEEECCCCCcCcCCcc
Confidence 122355677888999999999886 9999999999999999999999999 99999999999999999986533
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
.....+..+.+||.++|+
T Consensus 690 ~~~~~~~~i~~FL~~~Lg 707 (711)
T 4hvt_A 690 ESANYFINLYTFFANALK 707 (711)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 344566788999999985
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-25 Score=235.20 Aligned_cols=329 Identities=14% Similarity=0.099 Sum_probs=204.7
Q ss_pred EEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccC
Q 004141 73 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYA 151 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~ 151 (771)
.+|. ....+...++||..+..........|+|||||++|||.+..+ +..++|.++ .+++.++++......
T Consensus 12 ~~~~--~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~------ 82 (388)
T 3pe7_A 12 DTYQ--DASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDN------ 82 (388)
T ss_dssp EEEE--CTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBC------
T ss_pred eEEe--cCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCC------
Confidence 4554 223444566776554110001122389999999999998754 567899888 666666666543222
Q ss_pred CCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc--ccccCCcCcc------------------
Q 004141 152 DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEEDWGET------------------ 211 (771)
Q Consensus 152 ~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~g~~------------------ 211 (771)
...+.|||||++|+|.+...... .++...............+... ..+++|....
T Consensus 83 ---~~~~~~spdg~~l~~~~~~~~l~--~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~ 157 (388)
T 3pe7_A 83 ---TFGGFLSPDDDALFYVKDGRNLM--RVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKK 157 (388)
T ss_dssp ---SSSCEECTTSSEEEEEETTTEEE--EEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHH
T ss_pred ---ccceEEcCCCCEEEEEeCCCeEE--EEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccch
Confidence 12678999999999998542110 1111111100000001111100 1112221111
Q ss_pred ----cCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 212 ----YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 212 ----~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
+.......|+++|+.+++.+.+ +.....+..+.||| ||+. |+|++.... .....+||.+|
T Consensus 158 ~~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~~~~l~~~d 222 (388)
T 3pe7_A 158 FHEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDST----VAFCHEGPH---------DLVDARMWLIN 222 (388)
T ss_dssp HHHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCT---------TTSSCSEEEEE
T ss_pred hhhhhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCE----EEEEEecCC---------CCCcceEEEEe
Confidence 1122347899999999999888 45555678899999 9999 999874211 01244899999
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC
Q 004141 287 VSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
+ +++..++|+.... .+..|.|||||++|+|.+.+. | .....|+++|+.+++.+.+
T Consensus 223 ~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~----~--~~~~~l~~~d~~~g~~~~l 279 (388)
T 3pe7_A 223 E-----------------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK----G--SPDRFIYSADPETLENRQL 279 (388)
T ss_dssp T-----------------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET----T--CCCEEEEEECTTTCCEEEE
T ss_pred C-----------------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCC----C--CCcceEEEEecCCCceEEE
Confidence 8 7788888887653 477899999999999998764 2 1123599999998876444
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee------CCeeEEEEEECCCCcEEEecCCCC-----
Q 004141 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPAES----- 433 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~------~~~~~l~~~d~~tg~~~~l~~~~~----- 433 (771)
+..... . .+........|||||+.|++.... .+...||++|+++++.++|+....
T Consensus 280 ~~~~~~-~-------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 280 TSMPAC-S-------------HLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVF 345 (388)
T ss_dssp EEECCE-E-------------EEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCB
T ss_pred EcCCCc-e-------------eeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCccccc
Confidence 321110 0 000113345799999999887643 556789999999999999986654
Q ss_pred ------CceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 434 ------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 434 ------~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
....+.|+|||+.|++.... ...++||++++.+.
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDV-HGKPALYLATLPES 385 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGG
T ss_pred ccccccCCCCccCCCCCCEEEEEecC-CCceeEEEEECChh
Confidence 34567899999999988755 45577999887643
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=214.81 Aligned_cols=209 Identities=17% Similarity=0.182 Sum_probs=143.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+.||.+|.++++.|. ..++.|+||++||++.......+...++.|+++||+|+++|+||++..+............
T Consensus 36 ~~~dG~~i~g~l~~P~---~~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~ 112 (259)
T 4ao6_A 36 LEVDGRTVPGVYWSPA---EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVV 112 (259)
T ss_dssp EEETTEEEEEEEEEES---SSCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCGG
T ss_pred EeeCCeEEEEEEEeCC---CCCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhh
Confidence 3568999999999997 4567899999999887655556777889999999999999999966543332111111111
Q ss_pred ---------------ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc
Q 004141 594 ---------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 658 (771)
Q Consensus 594 ---------------~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~ 658 (771)
...+.|..++++++... +++++|+++|+|+||++++.++...|+ ++++|+..+....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~~~~----- 184 (259)
T 4ao6_A 113 GLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMGVEG----- 184 (259)
T ss_dssp GSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCCTTS-----
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEecccccc-----
Confidence 01134666777777655 678999999999999999999998775 5665543332110
Q ss_pred CCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 659 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. ..++...+.+|++|+|++||++|++||+++++++++++.. .+.+
T Consensus 185 ------------------------~~--------~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~--~~k~ 230 (259)
T 4ao6_A 185 ------------------------VN--------GEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT--KQKT 230 (259)
T ss_dssp ------------------------TT--------HHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC--SSEE
T ss_pred ------------------------cc--------ccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC--CCeE
Confidence 00 1123445678899999999999999999999999998843 4567
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++++|+..|.+ ...+.+..+++||++|||
T Consensus 231 l~~~~G~H~~~----p~~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 231 LHVNPGKHSAV----PTWEMFAGTVDYLDQRLK 259 (259)
T ss_dssp EEEESSCTTCC----CHHHHTHHHHHHHHHHCC
T ss_pred EEEeCCCCCCc----CHHHHHHHHHHHHHHhcC
Confidence 88898744433 345778899999999997
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.8e-23 Score=222.03 Aligned_cols=266 Identities=17% Similarity=0.198 Sum_probs=198.9
Q ss_pred CcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-
Q 004141 52 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW- 130 (771)
Q Consensus 52 dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~- 130 (771)
.+.+|+|...... +...+.|++++++ +...+.++... ..+..++|||||++|||.+... +...+++.+
T Consensus 142 ~~~~l~~~s~~~~---~~~~~~i~i~d~~--g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~ 210 (415)
T 2hqs_A 142 FRTRIAYVVQTNG---GQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTL 210 (415)
T ss_dssp TTCEEEEEEECSS---SSCCEEEEEEETT--SCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEET
T ss_pred CCCEEEEEEecCC---CCccceEEEEcCC--CCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecC-CCcEEEEEEC
Confidence 4667787765421 1223788998874 34556665543 5688999999999999998654 445666666
Q ss_pred cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCc
Q 004141 131 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 210 (771)
Q Consensus 131 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 210 (771)
.+++.+++....... ..++|||||++|+|.+...
T Consensus 211 ~tg~~~~l~~~~~~~----------~~~~~spdg~~la~~~~~~------------------------------------ 244 (415)
T 2hqs_A 211 ANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT------------------------------------ 244 (415)
T ss_dssp TTCCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT------------------------------------
T ss_pred CCCcEEEeecCCCcc----------cCEEEcCCCCEEEEEEecC------------------------------------
Confidence 556555554433222 5899999999999975432
Q ss_pred ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004141 211 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
+...||+||+.+++.+.+ +.....+..+.|||||+. |+|.+... ...+||.+|+
T Consensus 245 -----g~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~spdg~~----l~~~s~~~------------g~~~i~~~d~--- 298 (415)
T 2hqs_A 245 -----GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI--- 298 (415)
T ss_dssp -----SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET---
T ss_pred -----CCceEEEEECCCCCEEeC--cCCCCcccceEECCCCCE----EEEEECCC------------CCcEEEEEEC---
Confidence 346899999999999888 555556788999999999 99987422 2237999998
Q ss_pred cchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 291 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+++.++++.....+..++|||||++|++.+.+. | ...|+++|+.+++.+.++...
T Consensus 299 --------------~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~----g----~~~i~~~d~~~~~~~~l~~~~-- 354 (415)
T 2hqs_A 299 --------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG----G----QQHIAKQDLATGGVQVLSSTF-- 354 (415)
T ss_dssp --------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS----S----CEEEEEEETTTCCEEECCCSS--
T ss_pred --------------CCCCEEEEecCCCcccCeEECCCCCEEEEEECcC----C----ceEEEEEECCCCCEEEecCCC--
Confidence 7778888887777788999999999999998764 2 467999999887654432211
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeec
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d 443 (771)
....++|+|||+.|++.+...+...||.+|++++..++|+...+.+..+.|+|.
T Consensus 355 -------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 355 -------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp -------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred -------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 234678999999999988888888999999998899999887776777888874
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=216.21 Aligned_cols=231 Identities=16% Similarity=0.194 Sum_probs=170.6
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
+...+|..+.+++..|......++.|+||++||+++... ...+...+..|+++||.|+++|+||.+.... ..
T Consensus 19 ~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~-------~~ 91 (276)
T 3hxk_A 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN-------YN 91 (276)
T ss_dssp CCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC-------SC
T ss_pred ccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC-------CC
Confidence 344567888877665543223377899999999775432 3356678889999999999999999644210 01
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcCCCCCcchh
Q 004141 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
.......|+.++++++.++. .+++++|+|+|||+||.+++.++.+ .+.+++++|+.+|+.++....... ..
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~--~~--- 166 (276)
T 3hxk_A 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSD--LS--- 166 (276)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSS--SS---
T ss_pred cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcc--hh---
Confidence 11235789999999998864 3788999999999999999999988 788999999999987654321110 00
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
...+. + .. . ...++...+.++.+|+|++||++|..+|++++..+++.++..+.+++++++++++|
T Consensus 167 --------~~~~~--~--~~--~-~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H 231 (276)
T 3hxk_A 167 --------HFNFE--I--EN--I-SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSKHQVPFEAHFFESGPH 231 (276)
T ss_dssp --------SSCCC--C--SC--C-GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHTTTCCEEEEEESCCCT
T ss_pred --------hhhcC--c--hh--h-hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 01111 1 11 1 44567777888899999999999999999999999999999999999999999999
Q ss_pred cCCCCCC------------hHHHHHHHHHHHHHhh
Q 004141 748 GIERPQS------------DFESFLNIGLWFKKYC 770 (771)
Q Consensus 748 ~~~~~~~------------~~~~~~~i~~fl~~~L 770 (771)
.+..... ..+++..+.+||+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 266 (276)
T 3hxk_A 232 GVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQI 266 (276)
T ss_dssp TCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHH
T ss_pred CccccCccccccccccCchHHHHHHHHHHHHHhCc
Confidence 8775333 3568888999999875
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=209.27 Aligned_cols=214 Identities=17% Similarity=0.216 Sum_probs=161.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-------cCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-------SLP 589 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~-------~~~ 589 (771)
+|.++.++++.|++ ..++.|+||++||..+. ...+...+..|+++||.|+++|++|.++....+.. ...
T Consensus 14 ~~~~~~~~~~~p~~--~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~~~~~~~~~~~~~ 89 (241)
T 3f67_A 14 QGENMPAYHARPKN--ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFKELVS 89 (241)
T ss_dssp TTEEEEEEEEEETT--CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGCCSHHHHHHHTGG
T ss_pred CCcceEEEEecCCC--CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCchhhHHHHHHHhhh
Confidence 67899999999984 33568999999996554 34567788899999999999999986554332110 000
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
........+|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++++++..+..... .
T Consensus 90 ~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-------~------- 153 (241)
T 3f67_A 90 KVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-------K------- 153 (241)
T ss_dssp GSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-------C-------
T ss_pred cCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-------C-------
Confidence 0111234789999999998886 778999999999999999999999887 66666654432100 0
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..+...+|...+.++++|+|+++|++|..+|++++..+++.+++.+.+++++++++++|.+
T Consensus 154 -------------------~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~~ 214 (241)
T 3f67_A 154 -------------------SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALRAANATAEIVVYPEADHAF 214 (241)
T ss_dssp -------------------CSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHHHTTCSEEEEEETTCCTTT
T ss_pred -------------------ccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCcce
Confidence 0112234556677889999999999999999999999999999999999999999999988
Q ss_pred CCC-------CChHHHHHHHHHHHHHh
Q 004141 750 ERP-------QSDFESFLNIGLWFKKY 769 (771)
Q Consensus 750 ~~~-------~~~~~~~~~i~~fl~~~ 769 (771)
... ....+.++.+++||++|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~fl~~~ 241 (241)
T 3f67_A 215 NADYRASYHEESAKDGWQRMLAWFAQY 241 (241)
T ss_dssp TCTTSTTCCHHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 632 22356788999999764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-23 Score=209.11 Aligned_cols=241 Identities=13% Similarity=0.153 Sum_probs=160.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc-c
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-S 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~-~ 594 (771)
.+|.+++++++.|++ ..++.|+||++||.+.+.....|...+..|+++||.|+++|+||.+.+.... .... .
T Consensus 8 ~~g~~l~~~~~~p~~--~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~ 80 (251)
T 2wtm_A 8 CDGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKF-----EDHTLF 80 (251)
T ss_dssp ETTEEEEEEEECCTT--CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCG-----GGCCHH
T ss_pred cCCcEEEEEEEccCC--CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCCCCCCCCcc-----ccCCHH
Confidence 367899999998863 2346789999999776532345777888999999999999999944332111 0111 1
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+|+.++++++.+...+ ++++|+||||||.+++.++.++|++++++|+.+|.................+.......
T Consensus 81 ~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T 2wtm_A 81 KWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPD 158 (251)
T ss_dssp HHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTTBCCS
T ss_pred HHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCchhcch
Confidence 2367788888888655323 58999999999999999999999999999999987543221100000000000000000
Q ss_pred CCccCCCCC-ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 675 GKDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 675 ~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
....+.... ...........++...+.++++|+|+++|++|..+|++.++.+++.+. +++++++++++|.+ .+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~~~gH~~--~~ 232 (251)
T 2wtm_A 159 ELDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYK----NCKLVTIPGDTHCY--DH 232 (251)
T ss_dssp EEEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEETTCCTTC--TT
T ss_pred HHhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCC----CcEEEEECCCCccc--ch
Confidence 000000000 001111222334445567789999999999999999999888877663 48999999999988 56
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
...++.+.+.+||+++++
T Consensus 233 ~~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 233 HLELVTEAVKEFMLEQIA 250 (251)
T ss_dssp THHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 666899999999998874
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=207.35 Aligned_cols=225 Identities=17% Similarity=0.207 Sum_probs=162.2
Q ss_pred CCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 516 GAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+|.++.+.+|.|+.. ...++.|+||++|||++... ...+...+..|+++||.|+++||||.+..+ .
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~--------~- 81 (277)
T 3bxp_A 11 TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ--------S- 81 (277)
T ss_dssp STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC--------C-
T ss_pred cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC--------c-
Confidence 3566788889999731 24567899999999764432 345677888899999999999999943211 1
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhC--------------CCceeEEEecCCccchh
Q 004141 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------------PDKFVAAAARNPLCNLA 654 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--------------p~~~~~~v~~~p~~~~~ 654 (771)
......+|+.++++++.+.. .+++++|+|+|||+||.+++.++.++ +.+++++|+.+|..+..
T Consensus 82 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 161 (277)
T 3bxp_A 82 VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLT 161 (277)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEEEESCCCBTT
T ss_pred cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEEEeCCcccCC
Confidence 12235788999999888752 26778999999999999999999885 67899999999987643
Q ss_pred hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
..... ...+...+. ......+|...+.++.+|+|++||++|.++|+++++.+++.+++.+
T Consensus 162 ~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~ 221 (277)
T 3bxp_A 162 AGFPT----TSAARNQIT----------------TDARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQHQ 221 (277)
T ss_dssp SSSSS----SHHHHHHHC----------------SCGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHHTT
T ss_pred CCCCC----ccccchhcc----------------chhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHHCC
Confidence 21000 000000000 0223456667777888999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCCC--------------hHHHHHHHHHHHHHh
Q 004141 735 VETKVIVFPNDVHGIERPQS--------------DFESFLNIGLWFKKY 769 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~--------------~~~~~~~i~~fl~~~ 769 (771)
.+++++++++++|.+..... ..++++.+.+||+++
T Consensus 222 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 270 (277)
T 3bxp_A 222 VATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQ 270 (277)
T ss_dssp CCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhc
Confidence 99999999999997654332 357788999999875
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=220.72 Aligned_cols=234 Identities=16% Similarity=0.172 Sum_probs=163.9
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
.+.++++.|+ ..++.|+||++||++.. .+...+..|+++||.|+++||||.++. +........+|
T Consensus 144 ~l~~~l~~P~---~~~~~P~Vv~~hG~~~~----~~~~~a~~La~~Gy~V~a~D~rG~g~~--------~~~~~~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPP---GPGPFPGIIDIFGIGGG----LLEYRASLLAGHGFATLALAYYNFEDL--------PNNMDNISLEY 208 (422)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCTTCS----CCCHHHHHHHTTTCEEEEEECSSSTTS--------CSSCSCEETHH
T ss_pred cEEEEEEcCC---CCCCcCEEEEEcCCCcc----hhHHHHHHHHhCCCEEEEEccCCCCCC--------CCCcccCCHHH
Confidence 5899999997 45678999999997654 234568889999999999999995443 22233356899
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc---CCCCCcchhh-h--hccC
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG---TTDIPDWCYV-E--SYGS 673 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~---~~~~~~~~~~-~--~~~~ 673 (771)
+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+.+|......... ....+..... . ....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999887888999999999999999999999998 899998888753211000 0000000000 0 0000
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCccCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 751 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~~~~ 751 (771)
.....+.. ...........+....+.++++|+|+++|++|.++|.++. +.+.+.|++.+++ +++++||+++|.+..
T Consensus 288 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~~gagH~~~~ 365 (422)
T 3k2i_A 288 SGLVDIVD--IRNALVGGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEP 365 (422)
T ss_dssp TSCEECTT--CBCCCTTGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHHHTTCCCCEEEEETTCCSCCCS
T ss_pred chhHHHHH--HHhhhhhcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEECCCCCEECC
Confidence 00000000 0000001112233345678899999999999999998866 6899999999988 999999999999732
Q ss_pred C---------------------------CChHHHHHHHHHHHHHhhC
Q 004141 752 P---------------------------QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~---------------------------~~~~~~~~~i~~fl~~~L~ 771 (771)
+ ....+.++.+++||+++|+
T Consensus 366 p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~ 412 (422)
T 3k2i_A 366 PYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLG 412 (422)
T ss_dssp TTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2 3456789999999999984
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=217.60 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=167.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|++ .++.|+||++||++... ..+......|+++||.|+++|+|| +|.+.. ........
T Consensus 135 dg~~i~~~l~~p~~---~~~~P~vl~~hG~~~~~--~~~~~~~~~l~~~G~~v~~~d~rG---~G~s~~---~~~~~~~~ 203 (386)
T 2jbw_A 135 DGIPMPVYVRIPEG---PGPHPAVIMLGGLESTK--EESFQMENLVLDRGMATATFDGPG---QGEMFE---YKRIAGDY 203 (386)
T ss_dssp TTEEEEEEEECCSS---SCCEEEEEEECCSSCCT--TTTHHHHHHHHHTTCEEEEECCTT---SGGGTT---TCCSCSCH
T ss_pred CCEEEEEEEEcCCC---CCCCCEEEEeCCCCccH--HHHHHHHHHHHhCCCEEEEECCCC---CCCCCC---CCCCCccH
Confidence 68999999999984 36789999999976543 234445888899999999999999 444411 11111122
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
.+++.++++++.+++.++.++|+|+|+|+||++++.++.+ |++++++|+. |+.++...... .+. ...... .
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~--~~~-~~~~~~----~ 274 (386)
T 2jbw_A 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL--ETP-LTKESW----K 274 (386)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG--SCH-HHHHHH----H
T ss_pred HHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh--ccH-HHHHHH----H
Confidence 3568888899998877888999999999999999999998 8899999999 88775433220 000 000000 0
Q ss_pred ccCCCCCChhhH-HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHH-HhCCCCEEEEEeCCCCccCCCCCC
Q 004141 677 DSFTESPSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL-REKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 677 ~~~~~~~~~~~~-~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l-~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
..+......+.. ..+...++...+.++++|+|+++|++|. +|+++++++++.+ +. +++++++++++|.+ ...
T Consensus 275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~---~~~~~~~~~~gH~~--~~~ 348 (386)
T 2jbw_A 275 YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE---HLNLVVEKDGDHCC--HNL 348 (386)
T ss_dssp HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG---GEEEEEETTCCGGG--GGG
T ss_pred HHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHhcCC---CcEEEEeCCCCcCC--ccc
Confidence 001111112233 4556778888889999999999999999 9999999999988 64 58999999999976 334
Q ss_pred hHHHHHHHHHHHHHhhC
Q 004141 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L~ 771 (771)
..+++..+.+||+++|+
T Consensus 349 ~~~~~~~i~~fl~~~l~ 365 (386)
T 2jbw_A 349 GIRPRLEMADWLYDVLV 365 (386)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 45889999999999874
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=216.09 Aligned_cols=216 Identities=16% Similarity=0.162 Sum_probs=168.2
Q ss_pred ccccC-CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch----------HHHHHHHHCCcEEEEECCCCCCCC
Q 004141 512 NLTKG-AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS----------KSLAFLSSVGYSLLIVNYRGSLGF 580 (771)
Q Consensus 512 ~~~~~-~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~----------~~~~~la~~G~~Vv~~d~rG~~~~ 580 (771)
.+.+. +|.++.+++|.|+++.+.+++|+||++||+++........ ....+....|+.|+++|++|.+++
T Consensus 148 ~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~g~~~~ 227 (380)
T 3doh_A 148 TFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227 (380)
T ss_dssp EEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCCTTCCS
T ss_pred eeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCCCCCcc
Confidence 44556 7899999999999766678899999999987553221111 112234577899999999998888
Q ss_pred ChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC
Q 004141 581 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 581 g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~ 660 (771)
+..+.............+|+.++++++.++..+|++||+|+||||||++++.++.++|++++++++.+|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~------- 300 (380)
T 3doh_A 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV------- 300 (380)
T ss_dssp BTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-------
T ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-------
Confidence 7766543333344566889999999999987788999999999999999999999999999999999887410
Q ss_pred CCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
..+..+ .+|+|++||+.|..+|++++++++++|++.|.++++
T Consensus 301 -------------------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 343 (380)
T 3doh_A 301 -------------------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRY 343 (380)
T ss_dssp -------------------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEE
T ss_pred -------------------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCceEE
Confidence 111223 389999999999999999999999999999999999
Q ss_pred EEeCCC---CccCCCCCChHHHHH--HHHHHHHHhhC
Q 004141 740 IVFPND---VHGIERPQSDFESFL--NIGLWFKKYCK 771 (771)
Q Consensus 740 ~~~~~~---~H~~~~~~~~~~~~~--~i~~fl~~~L~ 771 (771)
++++++ +|++.........+. .+++||.++.+
T Consensus 344 ~~~~~~~h~~h~~~~H~~~~~~~~~~~i~~wL~~~~r 380 (380)
T 3doh_A 344 TEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 380 (380)
T ss_dssp EEECTTHHHHTTCCTTCTHHHHHTCHHHHHHHHTCC-
T ss_pred EEecCCcccCCCCCCchhHHHhcCCHHHHHHHHhhcC
Confidence 999999 454444444456666 89999987643
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=215.08 Aligned_cols=237 Identities=19% Similarity=0.222 Sum_probs=159.4
Q ss_pred cccCCCceEEEEEEe-cCCC--------------------CCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHHHC-Cc
Q 004141 513 LTKGAQKPFEAIFVS-SSHK--------------------KDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSV-GY 567 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~-P~~~--------------------~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la~~-G~ 567 (771)
+...+| +.+.+|. |... ...++.|+||++|||++...... |...+..|+++ ||
T Consensus 69 ~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g~ 146 (365)
T 3ebl_A 69 IDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKG 146 (365)
T ss_dssp EETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTS
T ss_pred ecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHHHHHHCCC
Confidence 344556 6667777 8642 23467899999999987544332 45677778775 99
Q ss_pred EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCCCC-eEEEEEcChhHHHHHHHHhhCCC---
Q 004141 568 SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD--- 639 (771)
Q Consensus 568 ~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~l~G~S~GG~~a~~~a~~~p~--- 639 (771)
.|+++|||+++++. ....++|+.++++|+.++. .+|++ ||+|+|+|+||++|+.++.+.++
T Consensus 147 ~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a~~~~~~~~ 215 (365)
T 3ebl_A 147 VVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEGV 215 (365)
T ss_dssp EEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHHHHHHhcCC
Confidence 99999999865432 2235799999999999764 57898 99999999999999999987655
Q ss_pred ceeEEEecCCccchhhhhc----CCCCC--cchhhhhccCCCCccCCCCCChhhHHHHhhcCccc-ccCCCC----CcEE
Q 004141 640 KFVAAAARNPLCNLALMVG----TTDIP--DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVK----TPTI 708 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~----~P~l 708 (771)
.++++|+.+|+++...... ....+ .......+. ..+..... .......+|+. ....++ +|+|
T Consensus 216 ~~~g~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~p~~~~~~~l~~~~~pP~L 288 (365)
T 3ebl_A 216 KVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYW----KAYLPEDA---DRDHPACNPFGPNGRRLGGLPFAKSL 288 (365)
T ss_dssp CCCEEEEESCCCCCSSCCHHHHHHTTTSSCCHHHHHHHH----HHHSCTTC---CTTSTTTCTTSTTCCCCTTSCCCCEE
T ss_pred ceeeEEEEccccCCCcCChhhhhcCCCcccCHHHHHHHH----HHhCCCCC---CCCCcccCCCCCcchhhccCCCCCEE
Confidence 7999999999876431100 00000 000000000 00000000 00001122332 223333 6899
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC---CCCChHHHHHHHHHHHHHhhC
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE---RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~---~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|+||+.|..+ .++.+++++|++.|++++++++++++|++. ..+...++++.+.+||+++++
T Consensus 289 i~~G~~D~l~--~~~~~~~~~L~~~g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~i~~Fl~~~~~ 352 (365)
T 3ebl_A 289 IIVSGLDLTC--DRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNANLY 352 (365)
T ss_dssp EEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETTCCTTGGGSSCSHHHHHHHHHHHHHHHHHCC
T ss_pred EEEcCcccch--hHHHHHHHHHHHCCCCEEEEEECCCcEEEeccCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999776 567899999999999999999999999876 234456788999999999875
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.89 E-value=8e-23 Score=210.00 Aligned_cols=225 Identities=18% Similarity=0.179 Sum_probs=162.4
Q ss_pred cCCCceEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 515 KGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~---~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
..+|..+...+| |+.. ...++.|+||++||+++.... ..|...+..|+++||.|+++|+||.+.++
T Consensus 26 ~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~--------- 95 (283)
T 3bjr_A 26 KLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ--------- 95 (283)
T ss_dssp ECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS---------
T ss_pred ecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc---------
Confidence 334555666777 6531 144678999999997753322 34667788899999999999999965432
Q ss_pred CccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCCc-------------eeEEEecCCccchh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK-------------FVAAAARNPLCNLA 654 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~-------------~~~~v~~~p~~~~~ 654 (771)
........|+.++++++.+.. .+++++|+|+||||||.+++.++.++|+. ++++|+.+|..+..
T Consensus 96 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 175 (283)
T 3bjr_A 96 PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVISPL 175 (283)
T ss_dssp SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEESCCCCTT
T ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEcCCccccc
Confidence 011234778899999988753 36778999999999999999999999987 89999999987532
Q ss_pred hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
....... . ....+. ..+...++...+.++.+|+|+++|++|..+|++++..+++.++..+
T Consensus 176 ~~~~~~~-------~-----~~~~~~--------~~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~~g 235 (283)
T 3bjr_A 176 LGFPKDD-------A-----TLATWT--------PTPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALATAK 235 (283)
T ss_dssp SBC--------------------CCC--------CCGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHHTT
T ss_pred ccccccc-------c-----hHHHHH--------HHhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHHCC
Confidence 1100000 0 000000 0133456666778889999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCccCCCCC------------ChHHHHHHHHHHHHHh
Q 004141 735 VETKVIVFPNDVHGIERPQ------------SDFESFLNIGLWFKKY 769 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~------------~~~~~~~~i~~fl~~~ 769 (771)
.+++++++++++|.+.... ...++...+.+||+++
T Consensus 236 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 236 IPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 9999999999999764321 2247788999999864
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=220.16 Aligned_cols=234 Identities=14% Similarity=0.171 Sum_probs=161.6
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
.+.+++|.|+ ..++.|+||++||++.. .+...+..|+++||.|+++||||.++.+ ........+|
T Consensus 160 ~l~~~l~~P~---~~~~~P~Vv~lhG~~~~----~~~~~a~~La~~Gy~Vla~D~rG~~~~~--------~~~~~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPP---EPGPFPGIVDMFGTGGG----LLEYRASLLAGKGFAVMALAYYNYEDLP--------KTMETLHLEY 224 (446)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCSSCS----CCCHHHHHHHTTTCEEEEECCSSSTTSC--------SCCSEEEHHH
T ss_pred eEEEEEEeCC---CCCCCCEEEEECCCCcc----hhhHHHHHHHhCCCEEEEeccCCCCCCC--------cchhhCCHHH
Confidence 5899999997 45678999999997654 2334588899999999999999955432 2233345899
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh---cCCCCCcchh-hh--hccC
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCY-VE--SYGS 673 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---~~~~~~~~~~-~~--~~~~ 673 (771)
+.++++++.++..++.++|+|+||||||.+++.++.++|+ ++++|+.+|........ .....+.... .. ....
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999888888999999999999999999999988 89999888865321100 0000000000 00 0000
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCC-EEEEEeCCCCccCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVE-TKVIVFPNDVHGIER 751 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~~~~l~~~g~~-~~~~~~~~~~H~~~~ 751 (771)
.....+.. ................+.++++|+|+++|++|.++|.++. ..+++.|++.|.+ +++++||+++|.+..
T Consensus 304 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~g~~~~~l~~~pgagH~~~~ 381 (446)
T 3hlk_A 304 DGYADIVD--VLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEP 381 (446)
T ss_dssp SSCEECTT--CBCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHHHTTCCCCEEEEETTBCSCCCS
T ss_pred chHHHHHH--HHhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHHHcCCCCcEEEEECCCCCeECC
Confidence 00000000 0000000111122233677889999999999999998554 7899999999988 899999999998831
Q ss_pred ---------------------------CCChHHHHHHHHHHHHHhhC
Q 004141 752 ---------------------------PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ---------------------------~~~~~~~~~~i~~fl~~~L~ 771 (771)
.....+.++.+++||+++|+
T Consensus 382 p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~ 428 (446)
T 3hlk_A 382 PYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLG 428 (446)
T ss_dssp TTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhC
Confidence 11256789999999999984
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=212.51 Aligned_cols=241 Identities=14% Similarity=0.169 Sum_probs=168.4
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-C--
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-P-- 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~-- 589 (771)
+...+|.++.++++.|++. .++.|+||++||++.... +......|+++||.|+++|+||.++++....... +
T Consensus 73 ~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~p~~ 147 (337)
T 1vlq_A 73 FSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEG 147 (337)
T ss_dssp EECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCSS
T ss_pred EEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---CchhhcchhhCCCEEEEecCCCCCCcccCCCCcccccc
Confidence 4445688999999999742 567899999999876532 3334457788999999999999775432100000 0
Q ss_pred ---CCc---------------cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 590 ---GKV---------------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 590 ---~~~---------------~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
..+ ....++|+.++++++.+++.+|+++|+|+|+|+||.+++.++.++| .++++|+.+|..
T Consensus 148 ~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v~~~vl~~p~~ 226 (337)
T 1vlq_A 148 PVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPFL 226 (337)
T ss_dssp SBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCCS
T ss_pred cCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-CccEEEECCCcc
Confidence 000 0134789999999999987788899999999999999999999988 588999888854
Q ss_pred c-hhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHH
Q 004141 652 N-LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 652 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l 730 (771)
. ...+........+.....+.. .. ..........+...+|...+.++++|+|+++|+.|.++|++++.++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~~~~~~~l 301 (337)
T 1vlq_A 227 CHFRRAVQLVDTHPYAEITNFLK----TH-RDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNYY 301 (337)
T ss_dssp CCHHHHHHHCCCTTHHHHHHHHH----HC-TTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHC
T ss_pred cCHHHHHhcCCCcchHHHHHHHH----hC-chhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhHHHHHHhc
Confidence 3 322221111111111000000 00 00011222334456777788899999999999999999999999998887
Q ss_pred HhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 731 REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+. +++++++++++|.+. ..+....+.+||.++|+
T Consensus 302 ~~---~~~~~~~~~~gH~~~----~~~~~~~~~~fl~~~l~ 335 (337)
T 1vlq_A 302 AG---PKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 335 (337)
T ss_dssp CS---SEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred CC---CcEEEEcCCCCCCCc----chhhHHHHHHHHHHHHh
Confidence 64 589999999999863 34677899999999874
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-22 Score=195.24 Aligned_cols=201 Identities=20% Similarity=0.247 Sum_probs=156.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC--C-Ccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--G-KVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~--~-~~~ 593 (771)
+|.++.++++.|.+ +.|+||++||++.......+...+..|+++||.|+++|+|| +|.+...... . ...
T Consensus 20 ~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~ 91 (223)
T 2o2g_A 20 GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLT---QEEEEIDLRTRHLRFDI 91 (223)
T ss_dssp TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSC---HHHHHHHHHHCSSTTCH
T ss_pred CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCC---cCCCCccchhhcccCcH
Confidence 68899999999863 57999999997765433234567888999999999999998 5544322111 0 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++..++.++.++++++|||+||.+++.++.++|++++++|+.+|..+..
T Consensus 92 ~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 152 (223)
T 2o2g_A 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------------------- 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC-------------------
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC-------------------
Confidence 2236788899999988877888999999999999999999999999999999998864310
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
...+.++++|+|+++|++|..+|.+. .+.+.+.+.+++++++++++|.+..++
T Consensus 153 -----------------------~~~~~~~~~P~l~i~g~~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~H~~~~~~ 205 (223)
T 2o2g_A 153 -----------------------PSALPHVKAPTLLIVGGYDLPVIAMN----EDALEQLQTSKRLVIIPRASHLFEEPG 205 (223)
T ss_dssp -----------------------TTTGGGCCSCEEEEEETTCHHHHHHH----HHHHHHCCSSEEEEEETTCCTTCCSTT
T ss_pred -----------------------HHHHhcCCCCEEEEEccccCCCCHHH----HHHHHhhCCCeEEEEeCCCCcccCChH
Confidence 02345577999999999999997332 344555667899999999999977666
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
...++.+.+.+||+++|+
T Consensus 206 ~~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 206 ALTAVAQLASEWFMHYLR 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 667889999999999986
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=204.65 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=163.4
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.+++++++.|. ..+.|+||++||++.......|...+..|+++||.|+++|+||.+....... . ...
T Consensus 27 ~~~~g~~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~~---~-~~~ 98 (270)
T 3pfb_A 27 LERDGLQLVGTREEPF----GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFE---N-MTV 98 (270)
T ss_dssp EEETTEEEEEEEEECS----SSSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTSSSCGG---G-CCH
T ss_pred eccCCEEEEEEEEcCC----CCCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEccccccCCCCCCC---c-cCH
Confidence 3457899999999886 2357999999998766434456778889999999999999999544322110 0 111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
....+|+.++++++.++. +.++++|+|||+||.+++.++.++|++++++|+.+|.................+......
T Consensus 99 ~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (270)
T 3pfb_A 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIP 176 (270)
T ss_dssp HHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEECCTTSCC
T ss_pred HHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccccCccccc
Confidence 223678888899887763 346999999999999999999999999999999999876543211000000000000000
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
.................+........+.++++|+|+++|++|..+|++.+..+.+.+. +++++++++++|.+. .+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~-~~ 251 (270)
T 3pfb_A 177 DRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQ----NSTLHLIEGADHCFS-DS 251 (270)
T ss_dssp SEEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCS----SEEEEEETTCCTTCC-TH
T ss_pred ccccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCC----CCeEEEcCCCCcccC-cc
Confidence 0000000000011223334445556788899999999999999999999888877753 489999999999876 44
Q ss_pred ChHHHHHHHHHHHHHh
Q 004141 754 SDFESFLNIGLWFKKY 769 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~ 769 (771)
...++.+.+.+||+++
T Consensus 252 ~~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 252 YQKNAVNLTTDFLQNN 267 (270)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred chHHHHHHHHHHHhhc
Confidence 4567888899998764
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.4e-22 Score=207.15 Aligned_cols=226 Identities=15% Similarity=0.207 Sum_probs=161.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+...+| ++.+++|.|.+ ...|+||++|||++... ...+...+..|++ .||.|+++|||+++++.
T Consensus 68 ~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~--------- 133 (326)
T 3ga7_A 68 VPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR--------- 133 (326)
T ss_dssp ECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC---------
T ss_pred eecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC---------
Confidence 344456 89999999973 22399999999885432 3456677888877 89999999999866542
Q ss_pred CccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCCc------eeEEEecCCccchhhhhcCCC
Q 004141 591 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK------FVAAAARNPLCNLALMVGTTD 661 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~~------~~~~v~~~p~~~~~~~~~~~~ 661 (771)
....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.++++. ++++++.+|+.+......
T Consensus 134 --~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~--- 208 (326)
T 3ga7_A 134 --YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVS--- 208 (326)
T ss_dssp --TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCSCSCCHH---
T ss_pred --CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccccCCChh---
Confidence 2234789999999999863 47899999999999999999999877654 899999999865421100
Q ss_pred CCcchhhhhccCCCCccCCCCCChhhHHHH---------hhcCcc-----cccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 662 IPDWCYVESYGSKGKDSFTESPSVEDLTRF---------HSKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~sp~-----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
...+... .. .........+ ...+|. ..+.+..+|+||+||+.|+++ .++..++
T Consensus 209 ------~~~~~~~----~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~~ 275 (326)
T 3ga7_A 209 ------RRLFGGA----WD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLLH 275 (326)
T ss_dssp ------HHHCCCT----TT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHHH
T ss_pred ------HhhhcCC----CC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHHH
Confidence 0000000 00 0000000000 011221 123345679999999999998 5889999
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCC----ChHHHHHHHHHHHHHhh
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQ----SDFESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~----~~~~~~~~i~~fl~~~L 770 (771)
++|++.|+++++++|++++|++.... ...++++.+.+||+++|
T Consensus 276 ~~l~~~g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l 322 (326)
T 3ga7_A 276 QTLQAHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARM 322 (326)
T ss_dssp HHHHHTTCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999985322 34678899999999987
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=203.44 Aligned_cols=222 Identities=18% Similarity=0.206 Sum_probs=148.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..+.||++||.+.+ ...|...++.|+++||.|+++|+|| ||.+........ ....++|+.++++++.+.
T Consensus 49 G~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~G---hG~S~~~~~~~~-~~~~~~d~~~~~~~l~~~---- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTG---HGTTPAEMAAST-ASDWTADIVAAMRWLEER---- 118 (281)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTT---SSSCHHHHHTCC-HHHHHHHHHHHHHHHHHH----
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCC---CCCCCccccCCC-HHHHHHHHHHHHHHHHhC----
Confidence 345679999996654 4468889999999999999999999 555432211111 112267888888888765
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-----hcCCCCCcch--hhhhccCCCCccCC--CCCCh
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC--YVESYGSKGKDSFT--ESPSV 685 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~ 685 (771)
.++++|+||||||.+++.++.++|++++++|+.+|....... .......... .............. ..+ .
T Consensus 119 ~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 197 (281)
T 4fbl_A 119 CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTP-V 197 (281)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEE-G
T ss_pred CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCc-h
Confidence 368999999999999999999999999999999987643211 0000000000 00000000000000 000 0
Q ss_pred hhHHHHhh--cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 686 EDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 686 ~~~~~~~~--~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
.....+.. ......+.++++|+|+++|++|.++|++.++.+++.+.. .++++++++++||.+........+.+.|.
T Consensus 198 ~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~--~~~~l~~~~~~gH~~~~e~~~e~v~~~i~ 275 (281)
T 4fbl_A 198 PAIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS--TEKELLWLENSYHVATLDNDKELILERSL 275 (281)
T ss_dssp GGHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC--CCcEEEEECCCCCcCccccCHHHHHHHHH
Confidence 01111110 011234678999999999999999999999999887753 45899999999998766555668899999
Q ss_pred HHHHHh
Q 004141 764 LWFKKY 769 (771)
Q Consensus 764 ~fl~~~ 769 (771)
+||++|
T Consensus 276 ~FL~~H 281 (281)
T 4fbl_A 276 AFIRKH 281 (281)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 999986
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-21 Score=194.25 Aligned_cols=202 Identities=17% Similarity=0.214 Sum_probs=157.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ++.++++.|. .++.|+||++||.+.... ...+...+..|+++||.|+++|+||.+..... .
T Consensus 29 ~~~~g-~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~G~s~~~------~ 97 (249)
T 2i3d_A 29 NGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------F 97 (249)
T ss_dssp EETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------C
T ss_pred ECCCc-eEEEEEEcCC----CCCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCCCCCCCC------C
Confidence 34455 8999988875 356799999999643221 12346678889999999999999995432211 1
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.......+|+.++++++.++. .+.++++|+|||+||.+++.++.++|+ ++++|+.+|..+...
T Consensus 98 ~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--------------- 160 (249)
T 2i3d_A 98 DHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--------------- 160 (249)
T ss_dssp CSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---------------
T ss_pred CCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---------------
Confidence 122334689999999998875 477799999999999999999999998 999999988753110
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh-CCCCEEEEEeCCCCccC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-KGVETKVIVFPNDVHGI 749 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~-~g~~~~~~~~~~~~H~~ 749 (771)
...+.++++|+|+++|++|..+|++.++++++.+.. .+.+++++++++++|.+
T Consensus 161 --------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~H~~ 214 (249)
T 2i3d_A 161 --------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFF 214 (249)
T ss_dssp --------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTC
T ss_pred --------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhhccCCceeEEEECCCCccc
Confidence 122456789999999999999999999999999986 45679999999999987
Q ss_pred CCCCChHHHHHHHHHHHHHhhC
Q 004141 750 ERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
. ....++++.+.+||+++++
T Consensus 215 ~--~~~~~~~~~i~~fl~~~l~ 234 (249)
T 2i3d_A 215 N--GKVDELMGECEDYLDRRLN 234 (249)
T ss_dssp T--TCHHHHHHHHHHHHHHHHT
T ss_pred c--cCHHHHHHHHHHHHHHhcC
Confidence 6 3566889999999998863
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=226.39 Aligned_cols=309 Identities=12% Similarity=0.086 Sum_probs=196.0
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeec-CCccccccceEEEeCCCCCeEEEEecCCC---
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWA-PFPVEMTGASAVVPSPSGSKLLVVRNPEN--- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~~~~~~~~~SPdG~~la~~~~~~~--- 121 (771)
.+.+++||+.++.. + +.|+++++.++ +..++... .+.........++|||||++|||..+...
T Consensus 21 ~~~w~~dg~~~~~~----~-------~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ----E-------NNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CEEECSSSEEEEEE----T-------TEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred ccEECCCCcEEEEc----C-------CcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45567899755542 2 36778776433 33333222 11111111234899999999999886421
Q ss_pred --CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCC
Q 004141 122 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 198 (771)
Q Consensus 122 --~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (771)
....+++++ .+++.++++..... ...++|||||++|||++
T Consensus 88 ~~~~~~~~~~d~~~~~~~~l~~~~~~----------~~~~~~SPdG~~la~~~--------------------------- 130 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLITEERIPNN----------TQWVTWSPVGHKLAYVW--------------------------- 130 (740)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCTT----------EEEEEECSSTTCEEEEE---------------------------
T ss_pred EccceEEEEEECCCCcEEEcccCCCc----------ceeeEECCCCCEEEEEE---------------------------
Confidence 113456655 45554443332222 25899999999999973
Q ss_pred CCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC------------------ccceEEEecCCCCCccEEEE
Q 004141 199 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 199 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~------------------~~~~~~wspDg~~~~~~l~~ 260 (771)
+.+||++|+.+++.++++ ..+.. ....+.|||||+. |+|
T Consensus 131 ------------------~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~----la~ 187 (740)
T 4a5s_A 131 ------------------NNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAY 187 (740)
T ss_dssp ------------------TTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEE
T ss_pred ------------------CCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCE----EEE
Confidence 257999999999988884 11111 1135899999999 999
Q ss_pred EeecCccee-----------------eeeeeec----cCCceeEEEecccccchhhhhhhhcCCCCC---C---cceecC
Q 004141 261 VGWSSETRK-----------------LGIKYCY----NRPCALYAVRVSLYKSEASELELKESSSED---L---PVVNLT 313 (771)
Q Consensus 261 ~~~~~~~~~-----------------~g~~~~~----~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~~lt 313 (771)
.+......+ ..+.|.. +....|+++|+ ++ + ..++|+
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~-----------------~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQIT 250 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET-----------------TSCCSSSCCCEEEEC
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC-----------------CCCCCCCcceEEEec
Confidence 875433111 0011100 12236899998 66 5 556665
Q ss_pred C------CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC----C---CCCccceeeEEecccccCC
Q 004141 314 E------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG----N---FSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 314 ~------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~----~---~~~~~~~~~~~~~~~~~~~ 380 (771)
. +...+.+|+|||||+.+++..++. .....|+++|+.+++ . ..+.... .+
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~-------~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~----------~~ 313 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRI-------QNYSVMDICDYDESSGRWNCLVARQHIEMS----------TT 313 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESS-------TTEEEEEEEEEETTTTEEEECGGGCEEEEC----------SS
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCC-------CCEEEEEEEECCCCccccceeEEEEeeecc----------CC
Confidence 4 455688999999999888887764 234679999998877 1 1111000 00
Q ss_pred CCCcccccC--CCCCCccccCCCEEE-EEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC---C
Q 004141 381 DCFPGLYSS--SILSNPWLSDGCTML-LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---P 454 (771)
Q Consensus 381 ~~f~g~~~~--~~~~~~~s~Dg~~l~-~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~---~ 454 (771)
. |.. ....+.|||||+.|+ +.+..++..+||.+++++++.++|+.....+. ..+++|++.|+|+++. .
T Consensus 314 ~-----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~-~~~~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 314 G-----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGM 387 (740)
T ss_dssp S-----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEE-EEEEECSSEEEEEESCGGGC
T ss_pred c-----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEE-EEEEEeCCEEEEEEecCCCC
Confidence 0 000 124688999999988 66667788899999999999999998765433 3445779999998865 1
Q ss_pred CCCCeEEEEEecc
Q 004141 455 VDVPQVKYGYFVD 467 (771)
Q Consensus 455 ~~p~~l~~~~~~~ 467 (771)
..-..||++++.+
T Consensus 388 ~~~~~ly~v~~~g 400 (740)
T 4a5s_A 388 PGGRNLYKIQLID 400 (740)
T ss_dssp TTCBEEEEEETTE
T ss_pred CceeEEEEEECCC
Confidence 2335688877654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=207.16 Aligned_cols=318 Identities=13% Similarity=0.137 Sum_probs=201.8
Q ss_pred HHhhcCccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCC
Q 004141 32 QDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 111 (771)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~ 111 (771)
++|..++.+....+ ||++|+|+....+...+.....||++++. +++.+++ ..+..++|||||+
T Consensus 9 ~~l~~~~~~~~~~~------dG~~i~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l---------~~~~~~~~SpDg~ 71 (347)
T 2gop_A 9 KTFAKFAYLSDPRT------KGELVAYVLTKANLKDNKYENTIVIENLK--NNARRFI---------ENATMPRISPDGK 71 (347)
T ss_dssp -CCCCSCEEEEEEE------ETTEEEEEEEEEETTTTEEEEEEEEEETT--TCCEEEE---------ESCEEEEECTTSS
T ss_pred ccceeeEEcccceE------CCcEEEEEEeecCcccCCccceEEEEeCC--CCceEEc---------ccCCCeEECCCCC
Confidence 45556666655444 89999999877665556667889998764 3345555 2367899999999
Q ss_pred eEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004141 112 KLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 112 ~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
+|||++...+ +..++|.++ .+++.++++.... . ..+.|||||++|+|.+.......
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~----------~~~~wspdg~~l~~~~~~~~~~~----------- 129 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-I----------RSLEWNEDSRKLLIVGFKRREDE----------- 129 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-E----------EEEEECTTSSEEEEEEECCCC-------------
T ss_pred EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-c----------cceeECCCCCEEEEEEccCCCcC-----------
Confidence 9999987542 445688888 6677777776543 3 58999999999999975421100
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcce
Q 004141 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 268 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~ 268 (771)
.........|..+ |..+......+||++|+.+++. +.++ . . .+..+.||||| . ++... .....
T Consensus 130 -----~~~~~~~~~~~~~-g~~~~~~~~~~l~~~d~~~~~~~~~l~--~-~-~~~~~~~spdg-~----~~~~~-~~~~~ 193 (347)
T 2gop_A 130 -----DFIFEDDVPAWFD-DLGFFDGEKTTFWIFDTESEEVIEEFE--K-P-RFSSGIWHRDK-I----VVNVP-HREII 193 (347)
T ss_dssp ------------CCCC----------CEEEEEEEETTTTEEEEEEE--E-E-TTCEEEEETTE-E----EEEEE-CCCSS
T ss_pred -----CcEEEcccceeec-CcccccCccceEEEEECCCCeEEeeec--C-C-CcccccCCCCe-E----EEEEe-ccccc
Confidence 0000011112222 2222223457899999999988 7773 3 3 77899999998 5 54443 22100
Q ss_pred eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004141 269 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 269 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
. +.....+||.+| . ++.++|+.. .....+ ||||++|+|.+.... ......
T Consensus 194 ~-----~~~~~~~l~~~d-~------------------~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~---~~~~~~ 243 (347)
T 2gop_A 194 P-----QYFKFWDIYIWE-D------------------GKEEKMFEK-VSFYAV--DSDGERILLYGKPEK---KYMSEH 243 (347)
T ss_dssp C-----CSSCCEEEEEEE-T------------------TEEEEEEEE-ESEEEE--EECSSCEEEEECCSS---SCCCSS
T ss_pred c-----cccccccEEEeC-C------------------CceEEeccC-cceeeE--CCCCCEEEEEEcccc---CCcccc
Confidence 0 000134788887 2 455666655 444444 999999999987642 111234
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~-~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
.+||++| +++.+.++..... .+.. +.|+ || +++....++...|| ++ +|+.++
T Consensus 244 ~~l~~~d--~~~~~~l~~~~~~-------------------~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~--~g~~~~ 296 (347)
T 2gop_A 244 NKLYIYD--GKEVMGILDEVDR-------------------GVGQAKIKD-GK--VYFTLFEEGSVNLY-IW--DGEIKP 296 (347)
T ss_dssp CEEEEEC--SSCEEESSTTCCS-------------------EEEEEEEET-TE--EEEEEEETTEEEEE-EE--SSSEEE
T ss_pred ceEEEEC--CCceEeccccCCc-------------------ccCCccEEc-Cc--EEEEEecCCcEEEE-Ec--CCceEE
Confidence 6799998 4444444332110 1223 6799 87 77888888888999 99 577777
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 428 l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
++.....+....+++ .++++.++...|++||+.+
T Consensus 297 ~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 297 IAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred EecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 776544344445555 5888888999999999986
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-22 Score=197.90 Aligned_cols=208 Identities=18% Similarity=0.152 Sum_probs=157.7
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhc-----
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS----- 587 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~----- 587 (771)
+...+|.++.++++.|. .++.|+||++||.+.. ...+...+..|+++||.|+++|+||.+..+......
T Consensus 8 ~~~~~g~~l~~~~~~p~----~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~~ 81 (236)
T 1zi8_A 8 IQSYDGHTFGALVGSPA----KAPAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQR 81 (236)
T ss_dssp EECTTSCEECEEEECCS----SCSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHHHH
T ss_pred EecCCCCeEEEEEECCC----CCCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccccccchhhh
Confidence 44567889999999886 3568999999997654 336777888999999999999999855443210000
Q ss_pred ------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC
Q 004141 588 ------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 661 (771)
Q Consensus 588 ------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~ 661 (771)
..........+|+.++++++.++..++ ++++|+|||+||.+++.++.++| ++++++.+|....
T Consensus 82 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~-------- 150 (236)
T 1zi8_A 82 EQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE-------- 150 (236)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG--------
T ss_pred hhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc--------
Confidence 000011223678889999988775444 69999999999999999999988 8888877664210
Q ss_pred CCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 662 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
++...+.++++|+|+++|++|..+|++.++.+++.++..+ ++++++
T Consensus 151 ---------------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~-~~~~~~ 196 (236)
T 1zi8_A 151 ---------------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGANP-LLQVHW 196 (236)
T ss_dssp ---------------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTTCT-TEEEEE
T ss_pred ---------------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHhCC-CceEEE
Confidence 1233456778999999999999999999999999997655 799999
Q ss_pred eCCCCccCCCCCC-------hHHHHHHHHHHHHHhhC
Q 004141 742 FPNDVHGIERPQS-------DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 742 ~~~~~H~~~~~~~-------~~~~~~~i~~fl~~~L~ 771 (771)
+++++|.+..... ..+.++.+.+||+++|+
T Consensus 197 ~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 233 (236)
T 1zi8_A 197 YEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQS 233 (236)
T ss_dssp ETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC
T ss_pred ECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcC
Confidence 9999998775432 34688999999998874
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.3e-22 Score=206.02 Aligned_cols=224 Identities=17% Similarity=0.255 Sum_probs=157.9
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+.+++|.|+ ..++.|+||++|||++..... .+...+..|+. .||.|+++|||+++++. ....+
T Consensus 66 ~i~~~~~~p~---~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAP---GCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECT---TCCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCC---CCCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 3788899997 345789999999988654332 44556666665 69999999999866532 23357
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
+|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.++. ++++|+.+|+.+...... .+ ......
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~-----~~--~~~~~~ 203 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTND-----SF--KTRAEA 203 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCT-----HH--HHTTTT
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCc-----CH--HHhCcc
Confidence 9999999999998 57999999999999999999999876554 899999999987532100 00 000000
Q ss_pred CCCccCCCCCChh-hHHH--------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 674 KGKDSFTESPSVE-DLTR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 674 ~~~~~~~~~~~~~-~~~~--------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
..+....... .... ....+|....-...+|+||++|+.|.++ .++..++++|++.|+++++++|++
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~~--~~~~~~~~~l~~~g~~~~~~~~~g 278 (322)
T 3fak_A 204 ---DPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVLL--DDSIKLDAKAKADGVKSTLEIWDD 278 (322)
T ss_dssp ---CCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEETT
T ss_pred ---CcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCccH--HHHHHHHHHHHHcCCCEEEEEeCC
Confidence 0000000000 0000 1123444322222369999999999885 688999999999999999999999
Q ss_pred CCccCCC----CCChHHHHHHHHHHHHHhh
Q 004141 745 DVHGIER----PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~----~~~~~~~~~~i~~fl~~~L 770 (771)
++|++.. .+...++++.+.+||+++|
T Consensus 279 ~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 308 (322)
T 3fak_A 279 MIHVWHAFHPMLPEGKQAIVRVGEFMREQW 308 (322)
T ss_dssp CCTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 9998753 2234678899999999887
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=204.95 Aligned_cols=243 Identities=17% Similarity=0.155 Sum_probs=183.1
Q ss_pred CCCCeEEEEecCCCCC--CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 108 PSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
+.+++++|++...++. ..++..+ +++..+.++.....+ .+++|||||++|+|.+.+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v----------~~~~~Spdg~~la~~s~~~---------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES---------- 200 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT----------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc----------eeeEEcCCCCEEEEEEecC----------
Confidence 4588999998764221 4566555 544555555443333 5899999999999987542
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
+...|++||+.+++.+.+ ......+..++|||||+. |+|++..
T Consensus 201 -------------------------------~~~~i~~~d~~tg~~~~l--~~~~~~~~~~~~spdg~~----la~~~~~ 243 (415)
T 2hqs_A 201 -------------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSK 243 (415)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECT
T ss_pred -------------------------------CCcEEEEEECCCCcEEEe--ecCCCcccCEEEcCCCCE----EEEEEec
Confidence 236899999999998888 444456789999999999 9988632
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
+....||++|+ .+++.++++.+...+..+.|||||++|+|.+.+. |
T Consensus 244 ------------~g~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~----g- 289 (415)
T 2hqs_A 244 ------------TGSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----G- 289 (415)
T ss_dssp ------------TSSCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----S-
T ss_pred ------------CCCceEEEEEC-----------------CCCCEEeCcCCCCcccceEECCCCCEEEEEECCC----C-
Confidence 22347999998 7788888988887889999999999999998653 2
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+||++|+.+++.+.++.... ....++|||||+.|++.+..++...|+.+|+++++
T Consensus 290 ---~~~i~~~d~~~~~~~~l~~~~~--------------------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 290 ---RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp ---SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ---CcEEEEEECCCCCEEEEecCCC--------------------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 4579999998876544432211 12356899999999988877677889999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+.++... ....+.|+|||+.|++...... ...||+.++.
T Consensus 347 ~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~ 386 (415)
T 2hqs_A 347 VQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTD 386 (415)
T ss_dssp EEECCCSS-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETT
T ss_pred EEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECC
Confidence 98887654 5667899999999988776443 4578888765
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=212.51 Aligned_cols=241 Identities=14% Similarity=0.133 Sum_probs=165.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~- 590 (771)
.+...+|.++.++++.|++ .++.|+||++||+++... .|.... .++++||.|+++|+||.++++.........
T Consensus 86 ~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~--~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~~~~~~~~~ 159 (346)
T 3fcy_A 86 YFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNSG--DWNDKL-NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNT 159 (346)
T ss_dssp EEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCSC--CSGGGH-HHHTTTCEEEEECCTTSSSSCCCCCCCSSCC
T ss_pred EEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCCC--Chhhhh-HHHhCCcEEEEEcCCCCCCCCCCCcccCCCC
Confidence 4455578899999999983 567899999999876643 344333 567899999999999976554332110000
Q ss_pred -----------Cc----cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-h
Q 004141 591 -----------KV----GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A 654 (771)
Q Consensus 591 -----------~~----~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-~ 654 (771)
.. ....++|+.++++++.....+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|.... .
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~~p~~~~~~ 238 (346)
T 3fcy_A 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYK 238 (346)
T ss_dssp SBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEESCSSCCHH
T ss_pred cCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEECCCcccCHH
Confidence 00 01125899999999988877888999999999999999999999998 9999999997532 2
Q ss_pred hhhcCC-CCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 655 LMVGTT-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 655 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
...... ....+.....+... ..............+...++...+.++++|+|+++|+.|.++|++.+.++++++..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~- 315 (346)
T 3fcy_A 239 RVWDLDLAKNAYQEITDYFRL--FDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS- 315 (346)
T ss_dssp HHHHTTCCCGGGHHHHHHHHH--HCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHHHHTTCCS-
T ss_pred HHhhccccccchHHHHHHHHh--cCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC-
Confidence 221111 11111000000000 00000011222333444566677888999999999999999999988888776653
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++++++++|.+. .++.+.+.+||++.
T Consensus 316 --~~~~~~~~~~gH~~~-----~~~~~~i~~fl~~l 344 (346)
T 3fcy_A 316 --KKDIKVYPDYGHEPM-----RGFGDLAMQFMLEL 344 (346)
T ss_dssp --SEEEEEETTCCSSCC-----TTHHHHHHHHHHTT
T ss_pred --CcEEEEeCCCCCcCH-----HHHHHHHHHHHHHh
Confidence 689999999999886 35678999999864
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-22 Score=209.14 Aligned_cols=228 Identities=17% Similarity=0.198 Sum_probs=164.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|. +.|+||++||++.. ...|...+..|+++||.|+++|+|| +|.+...... ......
T Consensus 14 ~g~~l~~~~~~p~------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~g~s~~~~~~-~~~~~~ 81 (290)
T 3ksr_A 14 GQDELSGTLLTPT------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRG---HEGYASMRQS-VTRAQN 81 (290)
T ss_dssp TTEEEEEEEEEEE------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTT---SGGGGGGTTT-CBHHHH
T ss_pred CCeEEEEEEecCC------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCC---CCCCCCCccc-ccHHHH
Confidence 5789999999985 67999999998765 4467788899999999999999999 4444322111 112234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
.+|+.++++++.+++.++.++|+|+|||+||.+++.++.++| ++++++.+|........ ..+...... ....
T Consensus 82 ~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~---~~~~~~~~~---~~~~ 153 (290)
T 3ksr_A 82 LDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHW---DQPKVSLNA---DPDL 153 (290)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCT---TSBHHHHHH---STTH
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhh---hcccccccC---Chhh
Confidence 689999999999887778889999999999999999999887 77888888865422110 000000000 0000
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 677 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
..+..... .....++...+.++++|+|+++|+.|..+++++++.+++.+...+ +++++++++++|.+.......
T Consensus 154 ~~~~~~~~-----~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~gH~~~~~~~~~ 227 (290)
T 3ksr_A 154 MDYRRRAL-----APGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNAR-SLTSRVIAGADHALSVKEHQQ 227 (290)
T ss_dssp HHHTTSCC-----CGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTSS-EEEEEEETTCCTTCCSHHHHH
T ss_pred hhhhhhhh-----hhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccCC-CceEEEcCCCCCCCCcchHHH
Confidence 00000000 011122334456788999999999999999999999999987765 789999999999887665666
Q ss_pred HHHHHHHHHHHHhh
Q 004141 757 ESFLNIGLWFKKYC 770 (771)
Q Consensus 757 ~~~~~i~~fl~~~L 770 (771)
.++..+.+||++++
T Consensus 228 ~~~~~i~~fl~~~~ 241 (290)
T 3ksr_A 228 EYTRALIDWLTEMV 241 (290)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88899999999875
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=220.75 Aligned_cols=322 Identities=13% Similarity=0.091 Sum_probs=206.4
Q ss_pred HHhhcCccccc-eEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcc--------c-----
Q 004141 32 QDFTNISSIDK-AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPV--------E----- 97 (771)
Q Consensus 32 ~~~~~~~~~~~-~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~--------~----- 97 (771)
+++.+-+.+.. ....+..|+||++|+|..... .+.....||++++.+ ++.++++...-.. +
T Consensus 26 ~~~~~~~~~~~~~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (741)
T 2ecf_A 26 EAITGPLPLSGPTLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARR 100 (741)
T ss_dssp HHHTSSSCTTCCCCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTT--CCEEEEECGGGTC--------------
T ss_pred HHHhccCCcCCCCCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhh
Confidence 34443333333 344667789999999986421 112245888887643 3444444321000 0
Q ss_pred -------cccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---cceEEEecCCcccccccCCCcccceeecCCCCe
Q 004141 98 -------MTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 166 (771)
Q Consensus 98 -------~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~ 166 (771)
...+..++|||||++|+|.+. ..+++++ .++ ..++++...... ..++|||||++
T Consensus 101 ~~~~~~~~~~v~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~----------~~~~~SPDG~~ 165 (741)
T 2ecf_A 101 ERQRIAAMTGIVDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFA----------TDAKLSPKGGF 165 (741)
T ss_dssp ------CCEESCCCEECTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCE----------EEEEECTTSSE
T ss_pred hhhhhccccCcceeEECCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCccc----------ccccCCCCCCE
Confidence 012578999999999999876 3577666 455 444444332222 58999999999
Q ss_pred EEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc-----
Q 004141 167 IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS----- 241 (771)
Q Consensus 167 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~----- 241 (771)
|||+++ ..|++||+.+++.++++ .....
T Consensus 166 la~~~~---------------------------------------------~~i~~~d~~~g~~~~~~--~~~~~~~~~g 198 (741)
T 2ecf_A 166 VSFIRG---------------------------------------------RNLWVIDLASGRQMQLT--ADGSTTIGNG 198 (741)
T ss_dssp EEEEET---------------------------------------------TEEEEEETTTTEEEECC--CCCCSSEEES
T ss_pred EEEEeC---------------------------------------------CcEEEEecCCCCEEEec--cCCccceecc
Confidence 999731 47999999999988883 32211
Q ss_pred ------------cceEEEecCCCCCccEEEEEeecCccee--------------eeeeee----ccCCceeEEEeccccc
Q 004141 242 ------------VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYK 291 (771)
Q Consensus 242 ------------~~~~~wspDg~~~~~~l~~~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~ 291 (771)
+..+.|||||+. |+|.+....... ....|. .+....||++|+
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~---- 270 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSA----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP---- 270 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSC----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS----
T ss_pred ccceeeeeccccccceEECCCCCE----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC----
Confidence 467999999999 999875432110 000010 012237999998
Q ss_pred chhhhhhhhcCCCCC-CcceecCC---CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 292 SEASELELKESSSED-LPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~-~~~~~lt~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+ ++.+.+.. ....+..++| |||++|++...... .....|+++|+.+++.+.+...
T Consensus 271 -------------~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~------~~~~~i~~~d~~~g~~~~~~~~ 330 (741)
T 2ecf_A 271 -------------AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD------QKKLDLVEVTLASNQQRVLAHE 330 (741)
T ss_dssp -------------STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT------SSEEEEEEEETTTCCEEEEEEE
T ss_pred -------------CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc------CCeEEEEEEECCCCceEEEEEc
Confidence 77 77666653 3455788999 99999999886431 2356899999988765433221
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceee-EEeecCCE
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS-LLTLDGDN 446 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~-~~s~dg~~ 446 (771)
.. .. |......+.|||||+ +++++..++..+||.++++++ .+.++.....+... .|++||+.
T Consensus 331 ~~----------~~-----~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 331 TS----------PT-----WVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EC----------SS-----CCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTE
T ss_pred CC----------CC-----cCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCE
Confidence 10 00 101235789999999 777777777889999998766 88887765544444 59999999
Q ss_pred EEEEEeCCCC-CCeEEEEEe
Q 004141 447 IIAVSSSPVD-VPQVKYGYF 465 (771)
Q Consensus 447 l~~~~~~~~~-p~~l~~~~~ 465 (771)
|++..+.... ..+||..+.
T Consensus 394 l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEEEECSSCTTCBEEEEEET
T ss_pred EEEEEeCCCCceEEEEEEEc
Confidence 9887754321 344666554
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-21 Score=202.39 Aligned_cols=228 Identities=17% Similarity=0.202 Sum_probs=158.9
Q ss_pred CceEEEEEEecCCCC--------------CCCCCcEEEEEcCCCCCCCCCc---chHHHHHHH-HCCcEEEEECCCCCCC
Q 004141 518 QKPFEAIFVSSSHKK--------------DCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLS-SVGYSLLIVNYRGSLG 579 (771)
Q Consensus 518 g~~l~~~~~~P~~~~--------------~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la-~~G~~Vv~~d~rG~~~ 579 (771)
+..+.+.+|.|++.. ..++.|+||++|||++...... |...+..|+ +.||.|+++||||+++
T Consensus 80 ~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~ 159 (351)
T 2zsh_A 80 RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPE 159 (351)
T ss_dssp TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 445777899997542 2467899999999886543332 666778888 7899999999999654
Q ss_pred CChhhhhcCCCCccccchhhHHHHHHHHHHcC----CCCCC-eEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCcc
Q 004141 580 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 651 (771)
Q Consensus 580 ~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~ 651 (771)
+. ....++|+.++++++.++. .+|++ ||+|+|||+||.+++.++.++|+ +++++|+.+|+.
T Consensus 160 ~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~v~~~vl~~p~~ 228 (351)
T 2zsh_A 160 NP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMF 228 (351)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCCCCEEEEESCCC
T ss_pred CC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCCeeEEEEECCcc
Confidence 31 1235789999999998753 47889 99999999999999999998888 899999999987
Q ss_pred chhhhhc----CCCCC--cch----hhhhccCCCCccCCCCCChhhHHHHhhcCcc----cccCCCCC-cEEEEeeCCCC
Q 004141 652 NLALMVG----TTDIP--DWC----YVESYGSKGKDSFTESPSVEDLTRFHSKSPI----SHISKVKT-PTIFLLGAQDL 716 (771)
Q Consensus 652 ~~~~~~~----~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~-P~lii~G~~D~ 716 (771)
+...... ....+ ... +...+..... . ......+|. ..+.++++ |+|+++|++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~~i~~pP~Lii~G~~D~ 297 (351)
T 2zsh_A 229 GGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGE-------D----REHPACNPFSPRGKSLEGVSFPKSLVVVAGLDL 297 (351)
T ss_dssp CCSSCCHHHHHHTTTSSCCHHHHHHHHHHHSCTTC-------C----TTSTTTCTTSTTSCCCTTCCCCEEEEEEETTST
T ss_pred CCCcCChhhhhcCCCcccCHHHHHHHHHHhCCCCC-------C----CCCcccCCCCCCccchhhCCCCCEEEEEcCCCc
Confidence 5321100 00000 000 0000000000 0 000011221 23455565 99999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---CCChHHHHHHHHHHHHHh
Q 004141 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---~~~~~~~~~~i~~fl~~~ 769 (771)
+++ ++..+++++++.+++++++++++++|.+.. .+...++++.+.+||+++
T Consensus 298 ~~~--~~~~~~~~l~~~g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl~~~ 351 (351)
T 2zsh_A 298 IRD--WQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAE 351 (351)
T ss_dssp THH--HHHHHHHHHHHTTCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHHHC-
T ss_pred chH--HHHHHHHHHHHcCCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 885 678899999999999999999999998765 244567888999998753
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=202.31 Aligned_cols=239 Identities=17% Similarity=0.156 Sum_probs=163.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~- 590 (771)
+...+|.++.++++.|++ .++.|+||++||+++. .. .+ .....|+++||.|+++|+||.+++..........
T Consensus 61 ~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~~--~~-~~~~~l~~~g~~v~~~d~rg~g~s~~~~~~~~~~~ 134 (318)
T 1l7a_A 61 YKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNASYDG--EI-HEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCCSGG--GH-HHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCCCCC--Cc-ccccchhhCCcEEEEecCCCCCCCCCcccccCCcc
Confidence 344467899999999974 5678999999998764 21 23 3344778899999999999976654332100000
Q ss_pred ----Cc---------cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc-hhhh
Q 004141 591 ----KV---------GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LALM 656 (771)
Q Consensus 591 ----~~---------~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~-~~~~ 656 (771)
.. ....++|+.++++++.++..+|+++|+|+|||+||.+++.++.++|+ ++++|+.+|... ....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~p~~~~~~~~ 213 (318)
T 1l7a_A 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred ccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecCCcccCHHHH
Confidence 00 02347899999999999877888999999999999999999999876 677777888643 2222
Q ss_pred hcCCCCCcchhhhhccCCCCccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 657 VGTTDIPDWCYVESYGSKGKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
........+.....+.. .. ..+. ..........++...+.++++|+|+++|+.|..+|++++..+++.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~-- 286 (318)
T 1l7a_A 214 IDVALEQPYLEINSFFR----RN-GSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET-- 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH----HS-CCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS--
T ss_pred HhcCCcCccHHHHHHHh----cc-CCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhhcCC--
Confidence 11111111111000000 00 0000 111122233456667788899999999999999999999988887754
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++++++++++|.. ..+....+.+||+++|+
T Consensus 287 -~~~~~~~~~~~H~~-----~~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 287 -KKELKVYRYFGHEY-----IPAFQTEKLAFFKQILK 317 (318)
T ss_dssp -SEEEEEETTCCSSC-----CHHHHHHHHHHHHHHHC
T ss_pred -CeeEEEccCCCCCC-----cchhHHHHHHHHHHHhC
Confidence 48999999999983 24678999999999885
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=208.83 Aligned_cols=311 Identities=13% Similarity=0.141 Sum_probs=203.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcccccc-ceEEEeCCCCCeEEEEecCCCCCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~-~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.+..||||++|+|..+. .....||++++ .+++.++++... .. ...+.|||||++|+|++...
T Consensus 40 ~~~~SpdG~~l~~~~~~------~g~~~l~~~d~--~~~~~~~l~~~~-----~~~~~~~~~spdg~~l~~~~~~~---- 102 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDF------DGNRNYYLLNL--ETQQAVQLTEGK-----GDNTFGGFISTDERAFFYVKNEL---- 102 (396)
T ss_dssp SCCBCTTSCEEEEEECT------TSSCEEEEEET--TTTEEEECCCSS-----CBCTTTCEECTTSSEEEEEETTT----
T ss_pred cCcCCCCCCEEEEEEec------CCCceEEEEEC--CCCcEEEeecCC-----CCccccceECCCCCEEEEEEcCC----
Confidence 35678999999998754 23457888775 344556665443 22 23388999999999998653
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004141 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
+++.++ .+++.++++.... . |+|||++|+|.+...... .+.....
T Consensus 103 ~l~~~d~~~~~~~~~~~~~~-------------~--~~~~g~~l~~~~~~~~~~-------------------~~~~~~~ 148 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVDE-------------E--WKGYGTWVANSDCTKLVG-------------------IEILKRD 148 (396)
T ss_dssp EEEEEETTTCCEEEEEECCT-------------T--EEEEEEEEECTTSSEEEE-------------------EEEEGGG
T ss_pred cEEEEECCCCCcEEEEeccc-------------c--cCCCCCEEEeccCCcccc-------------------ccccccc
Confidence 588777 5666666655321 1 788888888754321100 0000112
Q ss_pred ccCCcCcccC-----CccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCCCCccEEEEEeecCcceeeeeeeecc
Q 004141 204 WEEDWGETYA-----GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 204 ~~~d~g~~~~-----~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
+++|...... ......|+++|+.+++.+.+ ......+..+.||| ||+. |+|++.... ..
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~ 213 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQDTAWLGHPIYRPFDDST----VGFCHEGPH---------DL 213 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCS---------SS
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccCCcccccceECCCCCCE----EEEEecCCC---------CC
Confidence 2333211111 12457899999999998888 44455677899999 8998 999873111 01
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC--ccccceeecCCCCEEEEEecCCCCCCCCccccccceeee
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 355 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~--~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d 355 (771)
...+||.+++ ++++.+.++... ..+..+.|||||++|+|.+.+. | .....|+++|
T Consensus 214 ~~~~l~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~----~--~~~~~l~~~d 270 (396)
T 3c5m_A 214 VDARMWLVNE-----------------DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK----G--QTDRVIYKAN 270 (396)
T ss_dssp CSCCCEEEET-----------------TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET----T--TCCEEEEEEC
T ss_pred CCceEEEEEC-----------------CCCceeEeeccCCCccccceEECCCCCEEEEEecCC----C--CccceEEEEE
Confidence 2248999998 677777777642 3477899999999999998764 2 1123499999
Q ss_pred cCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEee-------------eCCeeEEEEEECC
Q 004141 356 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSI-------------WGSSQVIISVNVS 421 (771)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-Dg~~l~~~~~-------------~~~~~~l~~~d~~ 421 (771)
+.+++.+.++. +++ .. +.|+| ||+.|++... ..+...||.+|+.
T Consensus 271 ~~~g~~~~l~~----------------~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 271 PETLENEEVMV----------------MPP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TTTCCEEEEEE----------------CCS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CCCCCeEEeee----------------CCC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 98766433211 111 11 67999 9997766432 1244689999999
Q ss_pred CCcEEEecCCCC-----------CceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 422 SGELLRITPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~~~-----------~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+++.++++.... ....+.|++||+.|++..... .+.+||++++.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 329 AKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPES 385 (396)
T ss_dssp TTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTT
T ss_pred cCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccc
Confidence 999888875543 134468999999999887654 4567999887654
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.1e-21 Score=206.10 Aligned_cols=247 Identities=13% Similarity=0.081 Sum_probs=165.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
.+...+|..+.++++.|++ .+.++.|+||++||++.. ...+.. .+..|+++||.|+++|+||.+...... ...
T Consensus 72 ~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~~ 145 (367)
T 2hdw_A 72 TFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQP---RNV 145 (367)
T ss_dssp EEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTSTTSCCSS---SSC
T ss_pred EEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcCCCCCcC---ccc
Confidence 3445568899999999985 235678999999997754 334543 678899999999999999954432211 111
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-cCCCC-------
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GTTDI------- 662 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~-~~~~~------- 662 (771)
.......+|+.++++++.++..++.++|+|+|||+||.+++.++.++| .++++|+.+|+....... +....
T Consensus 146 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 224 (367)
T 2hdw_A 146 ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYDMTRVMSKGYNDSVTLEQRT 224 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCCHHHHHHHTTTTCCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccccccHHHhhhhccccchHHHH
Confidence 112345789999999999887778899999999999999999999988 589999998863211100 00000
Q ss_pred -------------------------C---c---ch---hhhhccCCCC--cc---CCCCCChhhHHHHhhcCcccccCCC
Q 004141 663 -------------------------P---D---WC---YVESYGSKGK--DS---FTESPSVEDLTRFHSKSPISHISKV 703 (771)
Q Consensus 663 -------------------------~---~---~~---~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~sp~~~~~~i 703 (771)
+ . .. ....+..... .. ............+...++...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (367)
T 2hdw_A 225 RTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEI 304 (367)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTSCSCTTGGGG
T ss_pred HHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCCChhHhHHhh
Confidence 0 0 00 0000000000 00 0000001223445566777788889
Q ss_pred C-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 704 K-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+ +|+|+++|++|. +++.++++++. .+.+++++++++++|..........+.+.+.+||+++|
T Consensus 305 ~~~PvLii~G~~D~--~~~~~~~~~~~---~~~~~~~~~~~g~gH~~~~~~~~~~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 305 SPRPILLIHGERAH--SRYFSETAYAA---AAEPKELLIVPGASHVDLYDRLDRIPFDRIAGFFDEHL 367 (367)
T ss_dssp TTSCEEEEEETTCT--THHHHHHHHHH---SCSSEEEEEETTCCTTHHHHCTTTSCHHHHHHHHHHHC
T ss_pred cCCceEEEecCCCC--CHHHHHHHHHh---CCCCeeEEEeCCCCeeeeecCchhHHHHHHHHHHHhhC
Confidence 9 999999999998 77777777665 56789999999999974321111126789999999876
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=184.42 Aligned_cols=194 Identities=13% Similarity=0.166 Sum_probs=145.0
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~---~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+| +++++++.|. ..++.|+||++||++ .......+...+..|+++||.|+++|+||.+.....
T Consensus 11 ~~~~~g-~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------ 80 (208)
T 3trd_A 11 IQGPVG-QLEVMITRPK---GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR------ 80 (208)
T ss_dssp EECSSS-EEEEEEECCS---SCCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------
T ss_pred EECCCc-eEEEEEEcCC---CCCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC------
Confidence 445567 9999999986 345789999999954 222223456678889999999999999995443221
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
........+|+.++++++.++ .+.++++++|||+||.+++.++ .+| +++++|+.+|..+..
T Consensus 81 ~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~~--------------- 141 (208)
T 3trd_A 81 YDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFYE--------------- 141 (208)
T ss_dssp CCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTSG---------------
T ss_pred ccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEeccccccC---------------
Confidence 122334578999999999887 3558999999999999999999 667 899999988875100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
....+..+++|+|+++|++|..+|++.++++++.+.. +++++++++++|.+
T Consensus 142 --------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~H~~ 192 (208)
T 3trd_A 142 --------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS---PVEFVVMSGASHFF 192 (208)
T ss_dssp --------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS---CCEEEEETTCCSSC
T ss_pred --------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC---ceEEEEeCCCCCcc
Confidence 0122344579999999999999999998888877654 38999999999987
Q ss_pred CCCCChHHHHHHHHHHH
Q 004141 750 ERPQSDFESFLNIGLWF 766 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl 766 (771)
... ..++.+.+.+||
T Consensus 193 ~~~--~~~~~~~i~~fl 207 (208)
T 3trd_A 193 HGR--LIELRELLVRNL 207 (208)
T ss_dssp TTC--HHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHh
Confidence 643 245556666665
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-21 Score=200.83 Aligned_cols=245 Identities=16% Similarity=0.181 Sum_probs=163.9
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|..+.++++.|. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||. |.+........
T Consensus 39 ~~~~~dg~~l~~~~~~p~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G~---G~S~~~~~~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGH---GQSEGERMVVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTTS---TTSCSSTTCCS
T ss_pred eEEccCCeEEEEEEeCCC----CCCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCCC---cCCCCcCCCcC
Confidence 345667899999999885 3457999999997765 34788889999999999999999994 44322111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc--hhhh
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVE 669 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~--~~~~ 669 (771)
.....++|+.++++++..+ .+..+|+|+|||+||.+++.++.++|++++++|+.+|........... .... ....
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATT-FKVLAAKVLN 186 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhH-HHHHHHHHHH
Confidence 2223378999999998877 456789999999999999999999999999999999976432110000 0000 0000
Q ss_pred hccC-CC---CccCCCCCChhhHHHHh---------------------hcCcccccCCCCCcEEEEeeCCCCccCcHHHH
Q 004141 670 SYGS-KG---KDSFTESPSVEDLTRFH---------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 670 ~~~~-~~---~~~~~~~~~~~~~~~~~---------------------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~ 724 (771)
.+.. .. ...............+. .......+.++++|+|+++|++|..++++.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~ 266 (342)
T 3hju_A 187 LVLPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAY 266 (342)
T ss_dssp HHCTTCBCCCCCGGGSCSCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HhccccccCcccccccccchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccChHHHH
Confidence 0000 00 00000000001001100 00112446788999999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHhh
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~L 770 (771)
.+++.+.. .+++++++++++|.+..... ..+++..+++||++++
T Consensus 267 ~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 267 LLMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp HHHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCC--CCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 88887753 25899999999998765432 4467788999998875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=205.16 Aligned_cols=280 Identities=13% Similarity=0.130 Sum_probs=171.8
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|..||||++|+|..+. ....+||++++ .+++.++++... ......+.|||||++|+|.+... .+
T Consensus 41 ~~~SpDg~~l~~~~~~------~g~~~l~~~d~--~~g~~~~lt~~~----~~~~~~~~~spdg~~l~~~~~~~----~l 104 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAF------DGPWNYYLLDL--NTQVATQLTEGR----GDNTFGGFLSPDDDALFYVKDGR----NL 104 (388)
T ss_dssp CCBCTTSCEEEEEECT------TSSCEEEEEET--TTCEEEECCCSS----CBCSSSCEECTTSSEEEEEETTT----EE
T ss_pred ccCCCCCCEEEEEEcC------CCCceEEEEeC--CCCceEEeeeCC----CCCccceEEcCCCCEEEEEeCCC----eE
Confidence 7789999999998752 13457898776 445667776553 11223578999999999987532 34
Q ss_pred EEEe-cCCcceEEEecCC-------------------------------------------------------ccccccc
Q 004141 127 FELW-SQSQLEKEFHVPQ-------------------------------------------------------TVHGSVY 150 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~-------------------------------------------------------~~~g~~~ 150 (771)
+.++ .+++.+.++..+. +....+.
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 184 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL 184 (388)
T ss_dssp EEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee
Confidence 4444 3333222221110 0000000
Q ss_pred -CCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 151 -ADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 151 -~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
.......+.||| ||++|+|.+..... .....||++|++++
T Consensus 185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~--------------------------------------~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 185 QENQWLGHPIYRPYDDSTVAFCHEGPHD--------------------------------------LVDARMWLINEDGT 226 (388)
T ss_dssp EESSCEEEEEEETTEEEEEEEEECSCTT--------------------------------------TSSCSEEEEETTSC
T ss_pred cCCccccccEECCCCCCEEEEEEecCCC--------------------------------------CCcceEEEEeCCCC
Confidence 112345788999 99999998753210 02468999999999
Q ss_pred ceeeccCCCCC--CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004141 229 EVQAVKGIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 229 ~~~~l~~~~~~--~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
+.+.+ +... ..+..+.|||||+. |+|++...+. ....||++|+ ++
T Consensus 227 ~~~~l--~~~~~~~~~~~~~~spdg~~----l~~~~~~~~~----------~~~~l~~~d~-----------------~~ 273 (388)
T 3pe7_A 227 NMRKV--KTHAEGESCTHEFWVPDGSA----LVYVSYLKGS----------PDRFIYSADP-----------------ET 273 (388)
T ss_dssp CCEES--CCCCTTEEEEEEEECTTSSC----EEEEEEETTC----------CCEEEEEECT-----------------TT
T ss_pred ceEEe--eeCCCCcccccceECCCCCE----EEEEecCCCC----------CcceEEEEec-----------------CC
Confidence 98888 4433 34668899999999 9998854321 1125999998 77
Q ss_pred CcceecCCCCc------cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC
Q 004141 307 LPVVNLTESIS------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 380 (771)
Q Consensus 307 ~~~~~lt~~~~------~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (771)
++.+.++...+ ....+.|||||++|+|...+..... ..+..+|+++|+.+++.++++......
T Consensus 274 g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~~~~~--------- 342 (388)
T 3pe7_A 274 LENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYK--IENDPFLYVFNMKNGTQHRVARHDTSW--------- 342 (388)
T ss_dssp CCEEEEEEECCEEEEEECTTSSEEEEEECCC--------------CCCCEEEEEETTTTEEEEEEECCCCC---------
T ss_pred CceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccc--cCCCCEEEEEeccCCceEEeccccCcc---------
Confidence 87777654332 1334589999999999765421000 012467999999887654443221100
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+.+-.......++|||||++|+|.+...+..+||.+++..+.
T Consensus 343 ~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~~~ 386 (388)
T 3pe7_A 343 KVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPESV 386 (388)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCGGG
T ss_pred cccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECChhc
Confidence 00000000024578999999999999988888999999986543
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=199.12 Aligned_cols=231 Identities=14% Similarity=0.121 Sum_probs=154.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECC--CCCCCCChhh-----
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNY--RGSLGFGEEA----- 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~Vv~~d~--rG~~~~g~~~----- 584 (771)
...|.++.+.+|.|++.. .+++|+||++||+++.. ..+... .+.++++||.|+++|+ ||.+..|...
T Consensus 24 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~~~~~~g 100 (282)
T 3fcx_A 24 VELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCTE--QNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFG 100 (282)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--------CC
T ss_pred hhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcchHHHHhhcCCeEEEEeccccCcccccccccccccc
Confidence 345788999999998542 36899999999987653 234333 5778899999999999 8766544321
Q ss_pred -----hhcCCC-Ccc--ccchhhHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 585 -----LQSLPG-KVG--SQDVNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 585 -----~~~~~~-~~~--~~~~~D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
...... .+. .....++. .++.++.++..+|++||+|+|+||||++|+.++.++|++++++++.+|+.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~ 180 (282)
T 3fcx_A 101 TGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVL 180 (282)
T ss_dssp CCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESCCCCGGG
T ss_pred CCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCCccCccc
Confidence 000000 000 01122233 444455545557889999999999999999999999999999999999876432
Q ss_pred hhcCCCCCcch---hhhhccCCCCccCCCCCChhhHHHHhhcCccccc---CCCCCcEEEEeeCCCCccCcHH--HHHHH
Q 004141 656 MVGTTDIPDWC---YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKVKTPTIFLLGAQDLRVPVSN--GLQYA 727 (771)
Q Consensus 656 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i~~P~lii~G~~D~~vp~~~--~~~~~ 727 (771)
. .|. +...++. ....+...+|...+ ..+++|+|++||+.|.++|..+ ++.++
T Consensus 181 ~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 240 (282)
T 3fcx_A 181 C-------PWGKKAFSGYLGT-------------DQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFI 240 (282)
T ss_dssp S-------HHHHHHHHHHHC----------------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHH
T ss_pred C-------chhHHHHHHhcCC-------------chhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHH
Confidence 1 010 0011111 01122233444333 3447999999999999997655 56899
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++|++.|++++++++|+++|.+.. ....+.+.+.|+.++|+
T Consensus 241 ~~l~~~g~~~~~~~~~g~~H~~~~---~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 241 AACTEKKIPVVFRLQEDYDHSYYF---IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHTTCCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCceEEEECCCCCcCHHH---HHhhhHHHHHHHHHhhc
Confidence 999999999999999999998642 23567788899999885
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-20 Score=193.30 Aligned_cols=246 Identities=15% Similarity=0.194 Sum_probs=162.2
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+...+|..++++++.|. +++.|+||++||.+.. ...|...+..|+++||.|+++|+||. |.+........
T Consensus 21 ~~~~~~g~~l~~~~~~~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~---G~s~~~~~~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVGH---GQSEGERMVVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTTS---TTSCSSTTCCS
T ss_pred eEecCCCeEEEEEEeccC----CCCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCCC---CCCCCCCCCCC
Confidence 345667899999999875 3457999999997765 34788889999999999999999994 44322111111
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-----------CC
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TT 660 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----------~~ 660 (771)
.....++|+.++++++..+ .+.++++++|||+||.+++.++.++|++++++|+.+|......... ..
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 1223368888888888776 3457899999999999999999999999999999999764321100 00
Q ss_pred CCCcch--------------hhhhccCCCCccCCCCCChhhHHHHh-hcCcccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 661 DIPDWC--------------YVESYGSKGKDSFTESPSVEDLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 661 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
..+... ....+...................+. .......+.++++|+|+++|++|..++++.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~ 249 (303)
T 3pe6_A 170 VLPNLSSGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYL 249 (303)
T ss_dssp TCCSCCCCCCCGGGTCSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBCHHHHHH
T ss_pred hcccccCCccchhhhhcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCChHHHHH
Confidence 000000 00000000000000000000000000 001123467889999999999999999999888
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCC--hHHHHHHHHHHHHHhh
Q 004141 726 YARALREKGVETKVIVFPNDVHGIERPQS--DFESFLNIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~--~~~~~~~i~~fl~~~L 770 (771)
+++.+.. ..+++++++++||.+..... ..+.+..+++||++++
T Consensus 250 ~~~~~~~--~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~ 294 (303)
T 3pe6_A 250 LMELAKS--QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 294 (303)
T ss_dssp HHHHCCC--SSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccc--CCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccC
Confidence 8887752 25899999999998764432 4467788999999876
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=202.61 Aligned_cols=231 Identities=19% Similarity=0.213 Sum_probs=160.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+| ++.+++|.|++. .++.|+||++|||++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 55 ~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~----------- 120 (310)
T 2hm7_A 55 LPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHK----------- 120 (310)
T ss_dssp ETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------
T ss_pred cCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCC-----------
Confidence 3345 899999999742 46789999999987543 334677788888875 9999999999966532
Q ss_pred cccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcc
Q 004141 593 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
.....+|+.++++++.++. .+++++|+|+|||+||.+++.++.++|+ .++++|+.+|..+..... ..+.+
T Consensus 121 ~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~~~~---~~~~~ 197 (310)
T 2hm7_A 121 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAH---PPASI 197 (310)
T ss_dssp TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCCTTS---CCHHH
T ss_pred CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCCccc---CCcch
Confidence 1234789999999998864 3678899999999999999999987765 699999999987643100 00000
Q ss_pred hhhhhccCC-C---------CccCCCCCChhhHHHHhhcCcccc--cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 666 CYVESYGSK-G---------KDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 666 ~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
...... . ...+.... .. ......+|... +..+ +|+||++|++|.++ .++..+++.+++.
T Consensus 198 ---~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~p~~~~~l~~~-~P~lii~G~~D~~~--~~~~~~~~~l~~~ 268 (310)
T 2hm7_A 198 ---EENAEGYLLTGGMMLWFRDQYLNSL--EE-LTHPWFSPVLYPDLSGL-PPAYIATAQYDPLR--DVGKLYAEALNKA 268 (310)
T ss_dssp ---HHTSSSSSSCHHHHHHHHHHHCSSG--GG-GGCTTTCGGGCSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHHHT
T ss_pred ---hhcCCCCCCCHHHHHHHHHHhCCCC--Cc-cCCccCCCCcCccccCC-CCEEEEEecCCCch--HHHHHHHHHHHHC
Confidence 000000 0 00000000 00 00012233321 2333 49999999999988 6788999999999
Q ss_pred CCCEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHhhC
Q 004141 734 GVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~L~ 771 (771)
|++++++++++++|++.. .+...+++..+.+||+++|+
T Consensus 269 g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 269 GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 999999999999997653 12335788999999999875
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=196.73 Aligned_cols=234 Identities=11% Similarity=0.068 Sum_probs=158.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCC-----------C
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------F 580 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~-----------~ 580 (771)
...|.++.+.+|.|+++...+++|+||++||++... ..|.. ....+++.||.|+++|.++.+. .
T Consensus 25 ~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~~~~~~G~ 102 (280)
T 3i6y_A 25 NTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADDEGYDLGQ 102 (280)
T ss_dssp TTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCCSSTTSST
T ss_pred cccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCcccccccCccccccccc
Confidence 345788999999998765578899999999987653 23433 3456678899999999875321 1
Q ss_pred ChhhhhcCC-CCcc-ccc-hhhHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh
Q 004141 581 GEEALQSLP-GKVG-SQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 581 g~~~~~~~~-~~~~-~~~-~~D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~ 656 (771)
|.++..... ..+. ... ...+. +.+.++.+...+ ++|++|+|||+||++++.++.++|++++++++.+|+.+....
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~ 181 (280)
T 3i6y_A 103 GAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNC 181 (280)
T ss_dssp TCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCCCGGGS
T ss_pred CccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCCccccccC
Confidence 111110000 0000 001 12222 344455454434 589999999999999999999999999999999998764321
Q ss_pred hcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004141 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
... ...+...++. ....+...+|...+.+++ +|+|++||+.|.+++.+. ++++++.|++.
T Consensus 182 ~~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~~~ 244 (280)
T 3i6y_A 182 PWG----QKAFTAYLGK-------------DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAASSN 244 (280)
T ss_dssp HHH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHHHT
T ss_pred chH----HHHHHHhcCC-------------chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHHHc
Confidence 100 0000011111 112334556665555554 899999999999998755 88999999999
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|++++++++|+++|.+. .....+.++++|+.++|+
T Consensus 245 g~~~~~~~~~g~~H~~~---~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 245 NYPLELRSHEGYDHSYY---FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp TCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEeCCCCccHH---HHHHhHHHHHHHHHhhcc
Confidence 99999999999999763 233567889999999885
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.1e-21 Score=199.38 Aligned_cols=237 Identities=20% Similarity=0.207 Sum_probs=160.3
Q ss_pred cccCCCc-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCC
Q 004141 513 LTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~-~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+|. ++.+++|.|++ ..++.|+||++|||++... ...+...+..|++ .||.|+++||||.+++.
T Consensus 56 i~~~~g~~~l~~~~~~P~~--~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~-------- 125 (323)
T 1lzl_A 56 APGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT-------- 125 (323)
T ss_dssp ECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC--------
T ss_pred ecCCCCCceeEEEEEecCC--CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC--------
Confidence 3344565 79999999974 3457899999999885432 3356677778876 59999999999965431
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhh----hc
Q 004141 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALM----VG 658 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~----~~ 658 (771)
.....+|+.++++++.+. ..+|+++|+|+|||+||.+++.++.++++ .++++++.+|+.+.... ..
T Consensus 126 ---~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 202 (323)
T 1lzl_A 126 ---FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTN 202 (323)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHH
T ss_pred ---CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCCCcCchhHHH
Confidence 123478999999998874 23677899999999999999999987665 48999999998764321 00
Q ss_pred CCCCCcch------hhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEeeCCCCccCcHHHHHHHHHH
Q 004141 659 TTDIPDWC------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 659 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~lii~G~~D~~vp~~~~~~~~~~l 730 (771)
......+. +...+....... ..........+|... ..+. +|+||++|++|.++ .++..++++|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~sp~~~-~~~~~~~P~li~~G~~D~~~--~~~~~~~~~l 273 (323)
T 1lzl_A 203 FVDTPLWHRPNAILSWKYYLGESYSG------PEDPDVSIYAAPSRA-TDLTGLPPTYLSTMELDPLR--DEGIEYALRL 273 (323)
T ss_dssp CSSCSSCCHHHHHHHHHHHHCTTCCC------TTCSCCCTTTCGGGC-SCCTTCCCEEEEEETTCTTH--HHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCCCccc------ccccCCCcccCcccC-cccCCCChhheEECCcCCch--HHHHHHHHHH
Confidence 00000000 000000000000 000000111233322 1222 79999999999988 6888999999
Q ss_pred HhCCCCEEEEEeCCCCccCCCCC---ChHHHHHHHHHHHHHhhC
Q 004141 731 REKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~fl~~~L~ 771 (771)
++.|++++++++++++|++.... ...++++.+.+||+++++
T Consensus 274 ~~~g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~ 317 (323)
T 1lzl_A 274 LQAGVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 317 (323)
T ss_dssp HHTTCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred HHcCCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999865322 245788999999998874
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-21 Score=218.66 Aligned_cols=254 Identities=14% Similarity=0.162 Sum_probs=171.8
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----C-CCcchH-HH---HHHHHCCcEEEEECCCCCCCCCh
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----S-LSSYSK-SL---AFLSSVGYSLLIVNYRGSLGFGE 582 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~----~-~~~~~~-~~---~~la~~G~~Vv~~d~rG~~~~g~ 582 (771)
.+...||.+|+++++.|++ .++.|+||++||.+... . ...|.. .. +.|+++||+|+.+|+||+++++.
T Consensus 29 ~i~~~DG~~L~~~~~~P~~---~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 29 MIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEECCCCCEEEEEEEeCCC---CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 3456688999999999974 36789999999844321 1 112221 22 78999999999999999887766
Q ss_pred hhhhcCC-----CCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-
Q 004141 583 EALQSLP-----GKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL- 655 (771)
Q Consensus 583 ~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~- 655 (771)
.+....+ ..++..+.+|+.++++||.++ +..+ .||+|+|+||||++++.++..+|+.++++|+.+|+.++..
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~d~~~~ 184 (615)
T 1mpx_A 106 DYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMG 184 (615)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTT
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCccccccc
Confidence 5432211 111226789999999999998 6665 5999999999999999999888999999999999988422
Q ss_pred -hh---cCCCCC--cchhhhhccCCC--------C---c-------------cC-C-CCCChh-------hHHHHhhcCc
Q 004141 656 -MV---GTTDIP--DWCYVESYGSKG--------K---D-------------SF-T-ESPSVE-------DLTRFHSKSP 696 (771)
Q Consensus 656 -~~---~~~~~~--~~~~~~~~~~~~--------~---~-------------~~-~-~~~~~~-------~~~~~~~~sp 696 (771)
.. +..... .|.+........ . . .+ . ..+.++ ..+.|...||
T Consensus 185 ~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~w~~~Sp 264 (615)
T 1mpx_A 185 DDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQAL 264 (615)
T ss_dssp SSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCH
T ss_pred cccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCcChhhhhcCh
Confidence 11 000000 010000000000 0 0 00 0 000000 1134557789
Q ss_pred ccccCC--CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC---EEEEEeCCCCccCCC------------CCChHH-H
Q 004141 697 ISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE---TKVIVFPNDVHGIER------------PQSDFE-S 758 (771)
Q Consensus 697 ~~~~~~--i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~---~~~~~~~~~~H~~~~------------~~~~~~-~ 758 (771)
..++++ |++|+|++||..|.+ ++.++.+++++|+..|++ +++++.|. +|+... .+.... .
T Consensus 265 ~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~g~p~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 342 (615)
T 1mpx_A 265 DKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFR 342 (615)
T ss_dssp HHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHhhcCCCcCCEEEECCC-CCCCccccccccCccccCcccchhhh
Confidence 889999 999999999999998 888999999999998753 88888887 697511 111112 2
Q ss_pred HHHHHHHHHHhhC
Q 004141 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~fl~~~L~ 771 (771)
.+.+++||++|||
T Consensus 343 ~~~~~~wfd~~Lk 355 (615)
T 1mpx_A 343 HDVLRPFFDQYLV 355 (615)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhc
Confidence 5778999999996
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=188.58 Aligned_cols=233 Identities=12% Similarity=0.173 Sum_probs=155.9
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+...+|.++.+.++.|. ..++.|+||++||+++... ...+. .....|++. |.|+++|+||++...
T Consensus 8 ~~~~dg~~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~--------- 74 (275)
T 3h04_A 8 VITKDAFALPYTIIKAK---NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS--------- 74 (275)
T ss_dssp EECTTSCEEEEEEECCS---SSSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC---------
T ss_pred EecCCcEEEEEEEEccC---CCCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc---------
Confidence 44567889999999987 4457899999999874322 22343 566677666 999999999854321
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc-----
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW----- 665 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~----- 665 (771)
.....+|+.++++++.++ ++.++++|+||||||.+++.++.+ +.++++|+.+|..+.............
T Consensus 75 --~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (275)
T 3h04_A 75 --LDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYAKIAQ 148 (275)
T ss_dssp --HHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHHHHHT
T ss_pred --cchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhhcccc
Confidence 123478999999999887 567899999999999999999998 789999999998765211100000000
Q ss_pred ----hhhhhccCCCCccCCCCCChhhHHHH------------hh--------cC-cccccCCCCCcEEEEeeCCCCccCc
Q 004141 666 ----CYVESYGSKGKDSFTESPSVEDLTRF------------HS--------KS-PISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 666 ----~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~--------~s-p~~~~~~i~~P~lii~G~~D~~vp~ 720 (771)
.....+.. ...............+ .. .. ....+.+++ |+|+++|++|..+|+
T Consensus 149 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~~~~ 225 (275)
T 3h04_A 149 SINETMIAQLTS--PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYDVPV 225 (275)
T ss_dssp TSCHHHHHTTSC--SSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSSSCT
T ss_pred cchHHHHhcccC--CCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCCCCh
Confidence 00000000 0000000000000000 00 00 111235666 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh--HHHHHHHHHHHHHhhC
Q 004141 721 SNGLQYARALREKGVETKVIVFPNDVHGIERPQSD--FESFLNIGLWFKKYCK 771 (771)
Q Consensus 721 ~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~--~~~~~~i~~fl~~~L~ 771 (771)
+.++.+++.+. +.+++++++++|.+...... .+++..+.+||+++|.
T Consensus 226 ~~~~~~~~~~~----~~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 226 EESEHIMNHVP----HSTFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp HHHHHHHTTCS----SEEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC----CceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 99888876554 47899999999998766654 6899999999999873
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=183.54 Aligned_cols=199 Identities=11% Similarity=0.085 Sum_probs=150.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ++.++++.|.+. ..++.|+||++||++... ....+...+..|+++||.|+++|+||.+..... .
T Consensus 16 ~~~~g-~~~~~~~~p~~~-~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~------~ 87 (220)
T 2fuk_A 16 DGPVG-PLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS------F 87 (220)
T ss_dssp EETTE-EEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC------C
T ss_pred eCCCC-eEEEEEEeCCCC-CccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCCC------c
Confidence 34456 899999999731 014589999999965322 222356678889999999999999995443221 1
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.......+|+.++++++.++. +.++++++|||+||.+++.++.++ .++++|+.+|......
T Consensus 88 ~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~--------------- 148 (220)
T 2fuk_A 88 DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD--------------- 148 (220)
T ss_dssp CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC---------------
T ss_pred ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh---------------
Confidence 223345889999999998874 667999999999999999999887 7999999988754211
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
...+. ...|+|+++|++|..+|++.++++++.+. .+++++++++++|.+.
T Consensus 149 --------------------------~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~H~~~ 198 (220)
T 2fuk_A 149 --------------------------FSDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFH 198 (220)
T ss_dssp --------------------------CTTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCT
T ss_pred --------------------------hhhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC---cCCcEEEeCCCCceeh
Confidence 00011 14789999999999999999888887764 3588999999999877
Q ss_pred CCCChHHHHHHHHHHHHHhhC
Q 004141 751 RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~~~L~ 771 (771)
. ...++.+.+.+||+++|+
T Consensus 199 ~--~~~~~~~~i~~~l~~~l~ 217 (220)
T 2fuk_A 199 R--KLIDLRGALQHGVRRWLP 217 (220)
T ss_dssp T--CHHHHHHHHHHHHGGGCS
T ss_pred h--hHHHHHHHHHHHHHHHhh
Confidence 5 345788999999998874
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-21 Score=197.62 Aligned_cols=210 Identities=10% Similarity=0.095 Sum_probs=147.7
Q ss_pred CCCCCcEEEEEcCCCCCC---CCCcchHHHHHH----HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH
Q 004141 533 DCSCDPLIVVLHGGPHSV---SLSSYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~l----a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~ 605 (771)
+.++.|+||++|||++.. ....|...+..| ++.||.|+++|||++++. .....++|+.++++
T Consensus 37 ~~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 37 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 356789999999987553 234577777878 589999999999985432 11235789999999
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----------------CCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----------------PDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----------------p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
++.++ ++.++++|+||||||.+++.++.++ |+.++++|+.+|..+................
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99887 5678999999999999999999885 7889999999998776543221100000000
Q ss_pred hhccCCCCccCCCCCChhhHHHHhhcCccc--ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPIS--HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~--~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
..++. ....+. .... ..++.. ....+++|+|+++|++|..+|+++++.+++.++..+.+++++++++++
T Consensus 184 ~~~~~-~~~~~~--~~~~------~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~~~g 254 (273)
T 1vkh_A 184 LAFPD-GIQMYE--EEPS------RVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGL 254 (273)
T ss_dssp HHCTT-CGGGCC--CCHH------HHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCS
T ss_pred HHhcc-cccchh--hccc------ccChhhhhcccccCCCEEEEecCCcCCCChHHHHHHHHHHHhcCCceEEEEeCCCc
Confidence 11100 000000 0000 111110 122367999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHH
Q 004141 747 HGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl 766 (771)
|.+.... .++.+.+.+||
T Consensus 255 H~~~~~~--~~~~~~i~~fl 272 (273)
T 1vkh_A 255 HNDVYKN--GKVAKYIFDNI 272 (273)
T ss_dssp GGGGGGC--HHHHHHHHHTC
T ss_pred ccccccC--hHHHHHHHHHc
Confidence 9875444 57777777775
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-20 Score=215.40 Aligned_cols=314 Identities=11% Similarity=0.039 Sum_probs=194.7
Q ss_pred EEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC-
Q 004141 44 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE- 122 (771)
Q Consensus 44 ~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~- 122 (771)
...+..|+||+.+ |+ + . .+.++++++.+. +..++.... ......+..++|||||++|||.......
T Consensus 19 ~~~~~~spdg~~~-~~-~-~-------dg~i~~~d~~~g--~~~~~~~~~-~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFI-YR-E-Q-------KGTVRLWNVETN--TSTVLIEGK-KIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBC-CC-C-S-------SSCEEEBCGGGC--CCEEEECTT-TTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEE-EE-e-C-------CCCEEEEECCCC--cEEEEeccc-cccccccceEEECCCCCEEEEEecCccce
Confidence 3455678899854 33 1 1 236788776443 333333221 0000136789999999999999765422
Q ss_pred ----CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 123 ----SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 123 ----~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
...+++.+ .+++.+++...... . .....++|||||++|||++.
T Consensus 86 ~~~~~~~i~~~d~~~~~~~~l~~~~~~-~------~~~~~~~~SPdG~~la~~~~------------------------- 133 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDPQSLDPPEVS-N------AKLQYAGWGPKGQQLIFIFE------------------------- 133 (723)
T ss_dssp SSCCCSEEEEEESSSCCCEECCCTTCC-S------CCCSBCCBCSSTTCEEEEET-------------------------
T ss_pred eecceeeEEEEECCCCceEeccCCccc-c------ccccccEECCCCCEEEEEEC-------------------------
Confidence 24566555 55554444332111 0 11258999999999999742
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CC------------------ccceEEEecCCCCCccEE
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SL------------------SVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~------------------~~~~~~wspDg~~~~~~l 258 (771)
..|+++|+++++.++++ .. .. ....++|||||+. |
T Consensus 134 --------------------~~i~~~~~~~g~~~~~~--~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~----l 187 (723)
T 1xfd_A 134 --------------------NNIYYCAHVGKQAIRVV--STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----L 187 (723)
T ss_dssp --------------------TEEEEESSSSSCCEEEE--CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----E
T ss_pred --------------------CeEEEEECCCCceEEEe--cCCCCCceECcccceeEEEEeccCcceEEECCCCCE----E
Confidence 47999999999888873 22 11 1257999999999 9
Q ss_pred EEEeecCcceee---------------eeeee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC---
Q 004141 259 VFVGWSSETRKL---------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES--- 315 (771)
Q Consensus 259 ~~~~~~~~~~~~---------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~--- 315 (771)
+|.+......+. ...+. .+....|+++|+ .+++. +.|+..
T Consensus 188 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~-----------------~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 188 AYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDP 250 (723)
T ss_dssp EEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCG
T ss_pred EEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC-----------------CCCceeEEeeCCccC
Confidence 998754321100 00000 012237999998 66663 666653
Q ss_pred ---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 316 ---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 316 ---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
...+..+.|||||+.|++...+. .....|+++|+.+++...+..... ..... ....
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~~----------~~~~~----~~~~ 309 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDES----------EAWLH----RQNE 309 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEEC----------SSCCC----CCCC
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCC-------CCeEEEEEEeCCCCcceEEEEecc----------CCEEe----ccCC
Confidence 44578899999999887776653 234679999998876533321110 00000 0013
Q ss_pred CCccccCCCEEEEE-eeeCC----eeEEEEEE-CCCCc---EEEecCCCCCce-eeEEeecCCEEEEEEeCCC-CCCeEE
Q 004141 393 SNPWLSDGCTMLLS-SIWGS----SQVIISVN-VSSGE---LLRITPAESNFS-WSLLTLDGDNIIAVSSSPV-DVPQVK 461 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~-~~~~~----~~~l~~~d-~~tg~---~~~l~~~~~~~~-~~~~s~dg~~l~~~~~~~~-~p~~l~ 461 (771)
.+.|||||+.|++. +..++ ..+||.+| ..+++ .+.++....... ...|++||+.|++...... .-..||
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 67899999999887 44555 66899999 67777 777775443332 3579999999998875531 334566
Q ss_pred EEEec
Q 004141 462 YGYFV 466 (771)
Q Consensus 462 ~~~~~ 466 (771)
..++.
T Consensus 390 ~~~~~ 394 (723)
T 1xfd_A 390 SANTV 394 (723)
T ss_dssp EECSS
T ss_pred EEeCC
Confidence 66543
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=200.23 Aligned_cols=228 Identities=18% Similarity=0.225 Sum_probs=161.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
++...+|.++.+++|.|.+ ++.|+||++|||++... ...+...+..|+ +.||.|+++|||+++++.
T Consensus 64 ~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-------- 131 (317)
T 3qh4_A 64 VVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP-------- 131 (317)
T ss_dssp EEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC--------
T ss_pred EecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC--------
Confidence 3445567799999999973 67899999999876433 335667777776 569999999999876542
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhh---cC
Q 004141 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMV---GT 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~---~~ 659 (771)
....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.++++ .++++++.+|+.+..... ..
T Consensus 132 ---~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~ 208 (317)
T 3qh4_A 132 ---YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDRPTASRSEF 208 (317)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSSCCHHHHHT
T ss_pred ---CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCCCCcCHHHh
Confidence 233578999999999885 34788999999999999999999987554 489999999988753100 00
Q ss_pred CCCCcchhhhhccCCCCccCCCCCChhhHHHHh-------hcCcccccCCCC--CcEEEEeeCCCCccCcHHHHHHHHHH
Q 004141 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH-------SKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~sp~~~~~~i~--~P~lii~G~~D~~vp~~~~~~~~~~l 730 (771)
...+.+... . .......+. ..+|... ..++ +|+||++|+.|.+++ ++..++++|
T Consensus 209 ~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~p~~~-~~l~~lpP~li~~G~~D~~~~--~~~~~a~~l 271 (317)
T 3qh4_A 209 RATPAFDGE-A-------------ASLMWRHYLAGQTPSPESVPGRR-GQLAGLPATLITCGEIDPFRD--EVLDYAQRL 271 (317)
T ss_dssp TTCSSSCHH-H-------------HHHHHHHHHTTCCCCTTTCGGGC-SCCTTCCCEEEEEEEESTTHH--HHHHHHHHH
T ss_pred cCCCCcCHH-H-------------HHHHHHHhcCCCCCCcccCCCcc-cccCCCCceeEEecCcCCCch--hHHHHHHHH
Confidence 000000000 0 000000111 1122211 1222 599999999999984 788999999
Q ss_pred HhCCCCEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHhhC
Q 004141 731 REKGVETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~L~ 771 (771)
++.|++++++++++++|++.. .+...++++.+.+||+++|+
T Consensus 272 ~~~g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 272 LGAGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHTTCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998542 23446788999999999874
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=196.32 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=156.9
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
++.+++|.|.+ .++.|+||++|||++.. ....|...+..|++ .||.|+++||||.+++. .....
T Consensus 76 ~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~-----------~p~~~ 141 (323)
T 3ain_A 76 NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENK-----------FPAAV 141 (323)
T ss_dssp EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCC-----------CcchH
Confidence 89999999973 45689999999987533 34467778888876 49999999999965531 12347
Q ss_pred hhHHHHHHHHHHcCC-C-CCCeEEEEEcChhHHHHHHHHhhCCCce---eEEEecCCccchhhhh----cCCCCCcc--h
Q 004141 598 NDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKF---VAAAARNPLCNLALMV----GTTDIPDW--C 666 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~-~-d~~ri~l~G~S~GG~~a~~~a~~~p~~~---~~~v~~~p~~~~~~~~----~~~~~~~~--~ 666 (771)
+|+.++++++.++.. . ++++|+|+|+|+||.+++.++.++|++. +++|+.+|+.+..... .......+ .
T Consensus 142 ~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~l~~~ 221 (323)
T 3ain_A 142 VDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDLITKSLYDNGEGFFLTRE 221 (323)
T ss_dssp HHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCSCCHHHHHHSSSSSSCHH
T ss_pred HHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCCCCccHHHhccCCCCCHH
Confidence 899999999987631 1 7889999999999999999998877665 8999999987632110 00000000 0
Q ss_pred hhhhccCCCCccCCCCCChhhHHHHhhcCcccc-cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 667 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
....+. ..+.... .. ......+|... +..+ +|+||++|+.|.++ .++..++++++..|+++++++++++
T Consensus 222 ~~~~~~----~~~~~~~--~~-~~~~~~sp~~~~l~~l-~P~lii~G~~D~l~--~~~~~~a~~l~~ag~~~~~~~~~g~ 291 (323)
T 3ain_A 222 HIDWFG----QQYLRSF--AD-LLDFRFSPILADLNDL-PPALIITAEHDPLR--DQGEAYANKLLQSGVQVTSVGFNNV 291 (323)
T ss_dssp HHHHHH----HHHCSSG--GG-GGCTTTCGGGSCCTTC-CCEEEEEETTCTTH--HHHHHHHHHHHHTTCCEEEEEETTC
T ss_pred HHHHHH----HHhCCCC--cc-cCCcccCcccCcccCC-CHHHEEECCCCccH--HHHHHHHHHHHHcCCCEEEEEECCC
Confidence 000000 0000000 00 00012234332 2223 59999999999998 5788999999999999999999999
Q ss_pred CccCCCC----CChHHHHHHHHHHHHHhh
Q 004141 746 VHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~----~~~~~~~~~i~~fl~~~L 770 (771)
+|++... +...+++..+.+||+++|
T Consensus 292 ~H~~~~~~~~~~~~~~~~~~i~~fl~~~l 320 (323)
T 3ain_A 292 IHGFVSFFPFIEQGRDAIGLIGYVLRKVF 320 (323)
T ss_dssp CTTGGGGTTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCcCHHHHHHHHHHHHHHHHHh
Confidence 9987642 334578899999999876
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=189.77 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=149.0
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
.+.++.|... +.++.|+||++||.+.. ...|...+..|+++||.|+++|+||.+... .....|+.
T Consensus 40 ~~~l~~p~~~-~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~------------~~~~~d~~ 104 (262)
T 1jfr_A 40 GGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQP------------DSRGRQLL 104 (262)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCH------------HHHHHHHH
T ss_pred ceeEEecCCC-CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCCCCC------------chhHHHHH
Confidence 3567777642 34678999999997655 335677888999999999999999854321 12356888
Q ss_pred HHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 602 TAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
++++++.+ ...++.++++|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 105 ~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~------------------------- 158 (262)
T 1jfr_A 105 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT------------------------- 158 (262)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------
Confidence 88999887 333677899999999999999999999987 899998877421
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
...+.++++|+|+++|++|..++++. ++.+++.+.. +.+++++++++++|.+..... .
T Consensus 159 -------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~H~~~~~~~-~ 217 (262)
T 1jfr_A 159 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPG-SLDKAYLELRGASHFTPNTSD-T 217 (262)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT-TSCEEEEEETTCCTTGGGSCC-H
T ss_pred -------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhhc-CCCceEEEeCCCCcCCcccch-H
Confidence 12345678999999999999999998 9999998843 567899999999998765443 5
Q ss_pred HHHHHHHHHHHHhhC
Q 004141 757 ESFLNIGLWFKKYCK 771 (771)
Q Consensus 757 ~~~~~i~~fl~~~L~ 771 (771)
++.+.+.+||+++++
T Consensus 218 ~~~~~i~~fl~~~l~ 232 (262)
T 1jfr_A 218 TIAKYSISWLKRFID 232 (262)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999999874
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=200.98 Aligned_cols=199 Identities=18% Similarity=0.186 Sum_probs=148.4
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+...+|.|++ ..++.|+||++|||++.... ..+...+..|+++||.|+++|||++++.. .....+|
T Consensus 68 ~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~-----------~~~~~~d 134 (303)
T 4e15_A 68 QLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVT-----------LEQLMTQ 134 (303)
T ss_dssp CEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSC-----------HHHHHHH
T ss_pred cEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCC-----------hhHHHHH
Confidence 4556778863 45678999999998754332 34556788899999999999999965432 1234789
Q ss_pred HHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCC-------CceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 600 VLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP-------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 600 ~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p-------~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
+.++++++.+. ...+.++|+|+|||+||++++.++.+.+ +.++++|+.+|+.++..+...... .....+
T Consensus 135 ~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~~---~~~~~~ 211 (303)
T 4e15_A 135 FTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESV---NPKNIL 211 (303)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTTT---SGGGTT
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhccccc---chhhhh
Confidence 99999999873 1246789999999999999999988653 279999999999887654321100 000001
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcc-cccCCC----CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPI-SHISKV----KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDV 746 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~ 746 (771)
.. ....+...+|. ..+..+ ++|+|++||++|..+++++++.+++++++.|.+++++++++++
T Consensus 212 ---------~~----~~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~g~~~~~~~~~g~~ 278 (303)
T 4e15_A 212 ---------GL----NERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYD 278 (303)
T ss_dssp ---------CC----CTTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHHTCCEEEEEEEEEE
T ss_pred ---------cC----CHHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHCCCceEEEEeCCCC
Confidence 11 11234455676 556655 8999999999999999999999999999999999999999999
Q ss_pred cc
Q 004141 747 HG 748 (771)
Q Consensus 747 H~ 748 (771)
|.
T Consensus 279 H~ 280 (303)
T 4e15_A 279 HF 280 (303)
T ss_dssp TT
T ss_pred ch
Confidence 95
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=196.07 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=150.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH
Q 004141 523 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 523 ~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~ 602 (771)
+.+|.|.. ..+.|+||++||++.. ...|...+..|+++||.|+++|+||.+.... ...+|+.+
T Consensus 85 ~~~~~p~~---~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~g~s~~------------~~~~d~~~ 147 (306)
T 3vis_A 85 GTIYYPRE---NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTTLDQPD------------SRARQLNA 147 (306)
T ss_dssp EEEEEESS---CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSSTTCCHH------------HHHHHHHH
T ss_pred eEEEeeCC---CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCCCCCcc------------hHHHHHHH
Confidence 46777863 3378999999997654 3367778889999999999999999443211 23478889
Q ss_pred HHHHHHHc------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 603 AIDHVIDM------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 603 ~i~~l~~~------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
+++++.+. ..++.++|+|+|||+||.+++.++.++|+ ++++|+.+|...
T Consensus 148 ~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~------------------------ 202 (306)
T 3vis_A 148 ALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL------------------------ 202 (306)
T ss_dssp HHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS------------------------
T ss_pred HHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC------------------------
Confidence 99999887 56788999999999999999999999887 888888877532
Q ss_pred ccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCCh
Q 004141 677 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSD 755 (771)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~ 755 (771)
...+.++++|+|+++|++|..+|++ +.+.+++.+...+ +++++++++++|.+.....
T Consensus 203 --------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~~-~~~~~~~~g~gH~~~~~~~- 260 (306)
T 3vis_A 203 --------------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPT-DKAYLELDGASHFAPNITN- 260 (306)
T ss_dssp --------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCTTS-CEEEEEETTCCTTGGGSCC-
T ss_pred --------------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhccCC-CceEEEECCCCccchhhch-
Confidence 1224567799999999999999998 6999999888766 8999999999998765544
Q ss_pred HHHHHHHHHHHHHhhC
Q 004141 756 FESFLNIGLWFKKYCK 771 (771)
Q Consensus 756 ~~~~~~i~~fl~~~L~ 771 (771)
.++...+.+||+++|+
T Consensus 261 ~~~~~~i~~fl~~~l~ 276 (306)
T 3vis_A 261 KTIGMYSVAWLKRFVD 276 (306)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHcc
Confidence 5888999999999874
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=202.23 Aligned_cols=235 Identities=17% Similarity=0.177 Sum_probs=154.7
Q ss_pred CceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc---chHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 518 QKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 518 g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~---~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+..+.+.+|.|++. ...++.|+||++|||++...... |...+..|+ +.||.|+++||||.+++.
T Consensus 63 ~~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~----------- 131 (338)
T 2o7r_A 63 LHNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR----------- 131 (338)
T ss_dssp TTTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------
T ss_pred CCCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------
Confidence 34467778888753 23578899999999886543322 666778887 789999999999965431
Q ss_pred cccchhhHHHHHHHHHHcC------CCCCCeEEEEEcChhHHHHHHHHhhCCC--------ceeEEEecCCccchhhhhc
Q 004141 593 GSQDVNDVLTAIDHVIDMG------LANPSKVTVVGGSHGGFLTTHLIGQAPD--------KFVAAAARNPLCNLALMVG 658 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~------~~d~~ri~l~G~S~GG~~a~~~a~~~p~--------~~~~~v~~~p~~~~~~~~~ 658 (771)
....++|+.++++++.++. .+|.++++|+|||+||.+++.++.++|+ +++++|+.+|+.+......
T Consensus 132 ~~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~ 211 (338)
T 2o7r_A 132 LPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTG 211 (338)
T ss_dssp TTHHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCH
T ss_pred CchHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCCh
Confidence 1235789999999998762 1566899999999999999999998887 8999999999865321100
Q ss_pred ----CCCCCc--ch----hhhhccCCCCccCCCCCChhhHHHHhhcCc---ccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 659 ----TTDIPD--WC----YVESYGSKGKDSFTESPSVEDLTRFHSKSP---ISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 659 ----~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp---~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
....+. .. +...+....... ..+. ...+...++ +..+..+.+|+|+++|++|.+++ .+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~P~Lvi~G~~D~~~~--~~~~ 284 (338)
T 2o7r_A 212 SELRLANDSRLPTFVLDLIWELSLPMGADR--DHEY---CNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMID--RQME 284 (338)
T ss_dssp HHHHTTTCSSSCHHHHHHHHHHHSCTTCCT--TSTT---TCCC----CCTHHHHHHHHTCEEEEEEETTSTTHH--HHHH
T ss_pred hhhccCCCcccCHHHHHHHHHHhCCCCCCC--CCcc---cCCCCCCcccccHhhhcCCCCCEEEEECCCCcchH--HHHH
Confidence 000000 00 000000000000 0000 000000011 11223355699999999999986 5678
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHHhh
Q 004141 726 YARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~L 770 (771)
++++|++.+.+++++++++++|.+... +...++++.+.+||++++
T Consensus 285 ~~~~l~~~~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~ 331 (338)
T 2o7r_A 285 LAERLEKKGVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSC 331 (338)
T ss_dssp HHHHHHHTTCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHCCCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999987543 233578899999998775
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=194.93 Aligned_cols=222 Identities=18% Similarity=0.216 Sum_probs=153.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+|.++ +.|++ .....++||++|||++.... ..+...+..|++ .||.|+++|||+++++. ..
T Consensus 66 ~g~~~----~~p~~--~~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~ 128 (322)
T 3k6k_A 66 GGVPC----IRQAT--DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FP 128 (322)
T ss_dssp TTEEE----EEEEC--TTCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TT
T ss_pred CCEeE----EecCC--CCCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------Cc
Confidence 45555 45653 22333449999998854433 345566777765 49999999999865431 22
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
..++|+.++++++.++ .+++++|+|+|+|+||.+++.++.++++. ++++|+.+|+.+..... ..+...
T Consensus 129 ~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~-------~~~~~~ 200 (322)
T 3k6k_A 129 AAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSR-------WSNSNL 200 (322)
T ss_dssp HHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCS-------HHHHHT
T ss_pred hHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCc-------cchhhc
Confidence 3579999999999988 46889999999999999999999887654 89999999988753210 000000
Q ss_pred ccCCCCccCCCCCChhhH----HH--------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 671 YGSKGKDSFTESPSVEDL----TR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~----~~--------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
... ... ...... .. ....+|+.......+|+||++|++|.++ .++..++++|+..|++++
T Consensus 201 ~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~~--~~~~~~~~~l~~~g~~~~ 272 (322)
T 3k6k_A 201 ADR---DFL---AEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEALL--SDSTTLAERAGAAGVSVE 272 (322)
T ss_dssp GGG---CSS---SCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cCC---CCc---CCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCccH--HHHHHHHHHHHHCCCCEE
Confidence 000 000 000000 00 0123444433334479999999999985 688999999999999999
Q ss_pred EEEeCCCCccCCCC----CChHHHHHHHHHHHHHhhC
Q 004141 739 VIVFPNDVHGIERP----QSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~L~ 771 (771)
+++|++++|.+... +...++++.+.+||+++|+
T Consensus 273 l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (322)
T 3k6k_A 273 LKIWPDMPHVFQMYGKFVNAADISIKEICHWISARIS 309 (322)
T ss_dssp EEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCccccccccccChHHHHHHHHHHHHHHHHHh
Confidence 99999999987532 2345788999999998874
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-20 Score=188.05 Aligned_cols=239 Identities=16% Similarity=0.184 Sum_probs=152.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.++.+..+.+. ....|+||++||++.......+......|+++||.|+++|+||.+..... ..
T Consensus 18 ~~~~g~~l~~~~~~~~----~~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~--------~~ 85 (270)
T 3llc_A 18 QGSDARSIAALVRAPA----QDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGHGASGGA--------FR 85 (270)
T ss_dssp SGGGCEEEEEEEECCS----STTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTSTTCCSC--------GG
T ss_pred eccCcceEEEEeccCC----CCCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccCCCCCCc--------cc
Confidence 3456888887766653 22479999999977653322234467778889999999999995443221 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh---CC---CceeEEEecCCccchhhhhcCCCCCcch-
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNLALMVGTTDIPDWC- 666 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~~~v~~~p~~~~~~~~~~~~~~~~~- 666 (771)
....+++.+.+..+++. +..++++|+|||+||.+++.++.+ +| ++++++|+.+|..+..............
T Consensus 86 ~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~~~~~~~~ 163 (270)
T 3llc_A 86 DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRER 163 (270)
T ss_dssp GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhhhhhhhhh
Confidence 22344444444333333 135789999999999999999999 99 8999999999987654322111111000
Q ss_pred --hhhhccCCCCccCCCCCC---hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 667 --YVESYGSKGKDSFTESPS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 667 --~~~~~~~~~~~~~~~~~~---~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
+...........+...+. ...............+.++++|+|+++|++|..+|++.++.+++.+.. .++++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~--~~~~~~~ 241 (270)
T 3llc_A 164 AELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPA--DDVVLTL 241 (270)
T ss_dssp HHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHTSCS--SSEEEEE
T ss_pred hhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC--CCeeEEE
Confidence 000000000001111111 122233334444566788899999999999999999998888877644 3489999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++++|.+...+....+.+.+.+||++
T Consensus 242 ~~~~gH~~~~~~~~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 242 VRDGDHRLSRPQDIDRMRNAIRAMIEP 268 (270)
T ss_dssp ETTCCSSCCSHHHHHHHHHHHHHHHC-
T ss_pred eCCCcccccccccHHHHHHHHHHHhcC
Confidence 999999876555566677778888764
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=196.42 Aligned_cols=232 Identities=17% Similarity=0.223 Sum_probs=156.9
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~-G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+| .+.+++|.|.+ ..+.|+||++||+++.. ....|...+..|+++ ||.|+++||||.+++.
T Consensus 55 ~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~----------- 119 (311)
T 2c7b_A 55 VSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK----------- 119 (311)
T ss_dssp ETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC-----------
T ss_pred CCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC-----------
Confidence 3445 89999999973 34579999999987432 234677778888875 9999999999965531
Q ss_pred cccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhh--------hh
Q 004141 593 GSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLAL--------MV 657 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~--------~~ 657 (771)
.....+|+.++++++.+.. .+++++|+|+|||+||.+++.++.++|+ .++++|+.+|+.++.. +.
T Consensus 120 ~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~ 199 (311)
T 2c7b_A 120 FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNMTGVPTASLVEFG 199 (311)
T ss_dssp TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCCSSCCCHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCCccccccCCccHH
Confidence 1234788999999987752 3677899999999999999999987765 5899999999876210 00
Q ss_pred cCCCCC-cchhhhhccCCCCccCCCCCChhhHHHHhhcCcccc-cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 658 GTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 658 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~-~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
...... .......+. ..+...+. . ......+|... +..+ +|+|+++|+.|.+++ +...+++.++..++
T Consensus 200 ~~~~~~~~~~~~~~~~----~~~~~~~~--~-~~~~~~~p~~~~l~~~-~P~lii~G~~D~~~~--~~~~~~~~l~~~g~ 269 (311)
T 2c7b_A 200 VAETTSLPIELMVWFG----RQYLKRPE--E-AYDFKASPLLADLGGL-PPALVVTAEYDPLRD--EGELYAYKMKASGS 269 (311)
T ss_dssp HCTTCSSCHHHHHHHH----HHHCSSTT--G-GGSTTTCGGGSCCTTC-CCEEEEEETTCTTHH--HHHHHHHHHHHTTC
T ss_pred HhccCCCCHHHHHHHH----HHhCCCCc--c-ccCcccCcccccccCC-CcceEEEcCCCCchH--HHHHHHHHHHHCCC
Confidence 000000 000000000 00000000 0 00112233322 2333 499999999999985 56778899999999
Q ss_pred CEEEEEeCCCCccCCC----CCChHHHHHHHHHHHHHhhC
Q 004141 736 ETKVIVFPNDVHGIER----PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~----~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++++++++++|.+.. .+...++++.+.+||+++++
T Consensus 270 ~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 309 (311)
T 2c7b_A 270 RAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQ 309 (311)
T ss_dssp CEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998763 23345788999999998874
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=193.13 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=155.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCC-----------CC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG-----------FG 581 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~-----------~g 581 (771)
..|.++.+.+|.|+++...+++|+||++||++... ..|.. ..+.+++.||.|+++|.++.+. .|
T Consensus 24 ~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~~~~~~g~g 101 (280)
T 3ls2_A 24 STHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTD--ENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQG 101 (280)
T ss_dssp TTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCSCTTSSTT
T ss_pred hcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCCh--hhhhcchhHHHHHhhCCeEEEEeCCcccccccccccccccccC
Confidence 35788999999999776678899999999987653 23322 3456677899999999764221 11
Q ss_pred hhhhhcCCC-Cc-cccc-hhhHH-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 582 EEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 582 ~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
..+...... .+ .... ...+. +.+.++.+...+ .+|++|+||||||++|+.++.++|++|+++++.+|+.+.....
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~~ 180 (280)
T 3ls2_A 102 AGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCP 180 (280)
T ss_dssp CCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCCSCGGGSH
T ss_pred CccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCccCcccCc
Confidence 111111000 00 0001 12222 333444444333 4899999999999999999999999999999999987643210
Q ss_pred cCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC----CCcEEEEeeCCCCccCcHH-HHHHHHHHHh
Q 004141 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV----KTPTIFLLGAQDLRVPVSN-GLQYARALRE 732 (771)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~P~lii~G~~D~~vp~~~-~~~~~~~l~~ 732 (771)
.. ...+...++. ....+...+|...+.++ .+|+|++||+.|.+++.+. +++++++|++
T Consensus 181 ~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 243 (280)
T 3ls2_A 181 WG----VKAFTGYLGA-------------DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAKQ 243 (280)
T ss_dssp HH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHHH
T ss_pred ch----hhHHHhhcCc-------------hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHHH
Confidence 00 0000011111 11233345555555555 4599999999999998744 8899999999
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.|+++++.++|+++|.+. .....+.++++|+.++|+
T Consensus 244 ~g~~~~~~~~~g~~H~~~---~~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 244 KDYPLTLEMQTGYDHSYF---FISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HTCCEEEEEETTCCSSHH---HHHHHHHHHHHHHHHHHC
T ss_pred hCCCceEEEeCCCCCchh---hHHHHHHHHHHHHHHHhc
Confidence 999999999999999864 123567889999999885
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=212.26 Aligned_cols=254 Identities=14% Similarity=0.180 Sum_probs=172.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-----CCC-CcchHH---H-HHHHHCCcEEEEECCCCCCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-----VSL-SSYSKS---L-AFLSSVGYSLLIVNYRGSLGFG 581 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-----~~~-~~~~~~---~-~~la~~G~~Vv~~d~rG~~~~g 581 (771)
.+...||.+|.++++.|++ .++.|+||++||.+.. ... ..|... . +.|+++||+|+.+|+||+++++
T Consensus 41 ~i~~~DG~~L~~~l~~P~~---~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG~g~S~ 117 (652)
T 2b9v_A 41 MVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQ 117 (652)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCC
T ss_pred EEECCCCcEEEEEEEecCC---CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCcCCCCC
Confidence 3445688999999999974 3678999999973322 111 111111 2 7899999999999999988887
Q ss_pred hhhhhcC--CCCcc---ccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 582 EEALQSL--PGKVG---SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~~--~~~~~---~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
..+.... ...++ ..+.+|+.++++||.++ +..+ .||+|+|+||||++++.++.++|+.++++|+.+|+.++..
T Consensus 118 g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~~d~~~ 196 (652)
T 2b9v_A 118 GDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWM 196 (652)
T ss_dssp SCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTT
T ss_pred CcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEeccccccccc
Confidence 6553221 11122 36789999999999998 7666 5999999999999999999888999999999999887532
Q ss_pred ---h--hcCCCCC--cchhhhhcc-CCCC-------ccC---C---------------CCCChh-------hHHHHhhcC
Q 004141 656 ---M--VGTTDIP--DWCYVESYG-SKGK-------DSF---T---------------ESPSVE-------DLTRFHSKS 695 (771)
Q Consensus 656 ---~--~~~~~~~--~~~~~~~~~-~~~~-------~~~---~---------------~~~~~~-------~~~~~~~~s 695 (771)
+ .+..... .|....... .... ..+ . ..+.+. ....|...|
T Consensus 197 ~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~d~yw~~~S 276 (652)
T 2b9v_A 197 GDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQA 276 (652)
T ss_dssp BSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTC
T ss_pred ccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCCCChHHhcCC
Confidence 0 0110000 010000000 0000 000 0 000000 112345678
Q ss_pred cccccCC--CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--CCEEEEEeCCCCccCCC-----C------CC--hHHH
Q 004141 696 PISHISK--VKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER-----P------QS--DFES 758 (771)
Q Consensus 696 p~~~~~~--i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~-----~------~~--~~~~ 758 (771)
|..++++ |++|+|++||..|.+ +..++.+++++|+..+ +++++++.|. +|+... . .. ....
T Consensus 277 p~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~g~~~~~~lvigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~ 354 (652)
T 2b9v_A 277 LDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYR 354 (652)
T ss_dssp HHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHH
T ss_pred hhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHhcCCCCCCEEEECCC-CCCCcccccccCCccccccccchhhh
Confidence 8888999 999999999999997 6688999999999998 8899998887 697521 1 11 1223
Q ss_pred HHHHHHHHHHhhC
Q 004141 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~fl~~~L~ 771 (771)
.+.+++||++|||
T Consensus 355 ~~~~~~wfd~~Lk 367 (652)
T 2b9v_A 355 RDVFRPFFDEYLK 367 (652)
T ss_dssp HHTHHHHHHHHHS
T ss_pred hhHHHHHHHHHhC
Confidence 6788999999996
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=193.28 Aligned_cols=234 Identities=10% Similarity=0.025 Sum_probs=157.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhh-------
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEA------- 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~------- 584 (771)
...|.++.+.+|.|++.. .+++|+||++||++... ..|.. ....+.+.||.|+++|+||.+......
T Consensus 23 ~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~~~~~~~g 99 (278)
T 3e4d_A 23 ETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTH--ANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDELTNWQMG 99 (278)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCCS--HHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCTTCTTSB
T ss_pred cccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEecCCcccCccccccccccccc
Confidence 345788999999998543 67899999999987653 23433 344556679999999999844321110
Q ss_pred -----hhcCCC-C-ccccchhhH-H-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 585 -----LQSLPG-K-VGSQDVNDV-L-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 585 -----~~~~~~-~-~~~~~~~D~-~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
...... . .......+. . +.++++.+...+|+++++|+|||+||++++.++.++|++++++++.+|+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 179 (278)
T 3e4d_A 100 KGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSS 179 (278)
T ss_dssp TTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCSCGGG
T ss_pred CCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeCCcccccC
Confidence 000000 0 000111222 2 355666666557779999999999999999999999999999999999876432
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEeeCCCCccCcHH-HHHHHHHHHh
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSN-GLQYARALRE 732 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~~~-~~~~~~~l~~ 732 (771)
... ....+...++. ....+...+|...+.++ .+|+|++||+.|.+++... ++.+++.|++
T Consensus 180 ~~~----~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 180 ADW----SEPALEKYLGA-------------DRAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp CTT----THHHHHHHHCS-------------CGGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred Ccc----chhhHHHhcCC-------------cHHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 110 00001111111 11223344555544444 4699999999999998432 6889999999
Q ss_pred CCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 733 KGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 733 ~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.|++++++++++++|.+.. ....+.++++|+.++|+
T Consensus 243 ~g~~~~~~~~~g~~H~~~~---~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 243 TDIGLTLRMHDRYDHSYYF---ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp SSCEEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEeCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 9999999999999997631 23567889999999885
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=202.13 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=159.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|..+.++++.+ +.++.|+||++||++.. ...+.... ..+.++||.|+++|+||. |.+..... .....
T Consensus 143 ~~~~l~~~~~~~----~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G~---G~s~~~~~--~~~~~ 211 (405)
T 3fnb_A 143 EGELLPGYAIIS----EDKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPGQ---GKNPNQGL--HFEVD 211 (405)
T ss_dssp TTEEEEEEEECC----SSSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTTS---TTGGGGTC--CCCSC
T ss_pred CCeEEEEEEEcC----CCCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCCC---cCCCCCCC--CCCcc
Confidence 467899988843 34456999999996543 22333333 356689999999999995 44422211 22233
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-----CCCCcchhhhh
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVES 670 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-----~~~~~~~~~~~ 670 (771)
..+|+.++++++..+. ++|+|+|||+||++++.++.++| +++++|+.+|+.++...... ...+.+.. ..
T Consensus 212 ~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~-~~ 285 (405)
T 3fnb_A 212 ARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTALKAPKTIL-KW 285 (405)
T ss_dssp THHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhhhCcHHHH-HH
Confidence 4778888888886553 78999999999999999999988 89999999999886543210 00111000 00
Q ss_pred ccCCC--------------CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 671 YGSKG--------------KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 671 ~~~~~--------------~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
+.... ...+...........+....+...+.++++|+|+++|++|..+|++++..+++.++..+.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~l~~~~~~ 365 (405)
T 3fnb_A 286 GSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFKQRGID 365 (405)
T ss_dssp ------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHHHHHHHHHhccCCCC
Confidence 00000 0000000001111223333444447889999999999999999999999999999999889
Q ss_pred EEEEEeCCCCccCC--CCCChHHHHHHHHHHHHHhhC
Q 004141 737 TKVIVFPNDVHGIE--RPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 737 ~~~~~~~~~~H~~~--~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++++++++..|... ..+....+.+.+.+||+++|+
T Consensus 366 ~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~ 402 (405)
T 3fnb_A 366 VTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFK 402 (405)
T ss_dssp EEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhC
Confidence 99999976665422 355566788999999999874
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=198.96 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=159.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-C--cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-S--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~--~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
+...+|..+.+.+|.|.+. .++.|+||++|||++.... . .|...+..|+++||.|+++||||.+++..
T Consensus 87 ~~~~~g~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~~------- 157 (361)
T 1jkm_A 87 ILGVDGNEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEG------- 157 (361)
T ss_dssp EECTTSCEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTE-------
T ss_pred eecCCCCeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCCC-------
Confidence 3445666899999999742 2378999999998744332 3 45667888888999999999999653321
Q ss_pred CCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHhh-----CCCceeEEEecCCccchhhhhc----C
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVG----T 659 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~-----~p~~~~~~v~~~p~~~~~~~~~----~ 659 (771)
.........|+.++++|+.++. ....++|+|+|||+||.+++.++.. +|++++++|+.+|+.+...... .
T Consensus 158 ~~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~~~~~~~~~~~ 237 (361)
T 1jkm_A 158 HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRL 237 (361)
T ss_dssp ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTSCHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccccccccccccc
Confidence 1122345789999999998752 0122399999999999999999987 7879999999999876510000 0
Q ss_pred CCCCcchhhhhccCCC--------CccCCCCCChhhHHHHhhcCcc----cccCCCCCcEEEEeeCCCCccCcHHHHHHH
Q 004141 660 TDIPDWCYVESYGSKG--------KDSFTESPSVEDLTRFHSKSPI----SHISKVKTPTIFLLGAQDLRVPVSNGLQYA 727 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~sp~----~~~~~i~~P~lii~G~~D~~vp~~~~~~~~ 727 (771)
.....+. ....... ...+..... . ......+|. ..+.++. |+||++|++|.+++ +++.++
T Consensus 238 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~p~~~~~~~l~~l~-P~Lii~G~~D~~~~--~~~~~~ 309 (361)
T 1jkm_A 238 TELPSLV--ENDGYFIENGGMALLVRAYDPTGE-H--AEDPIAWPYFASEDELRGLP-PFVVAVNELDPLRD--EGIAFA 309 (361)
T ss_dssp HHCTHHH--HTTTSSSCHHHHHHHHHHHSSSST-T--TTCTTTCGGGCCHHHHTTCC-CEEEEEETTCTTHH--HHHHHH
T ss_pred ccCcchh--hccCcccCHHHHHHHHHHhCCCCC-C--CCCcccCccccChhhHcCCC-ceEEEEcCcCcchh--hHHHHH
Confidence 0000000 0000000 000000000 0 000112333 2345565 99999999999997 888999
Q ss_pred HHHHhCCCCEEEEEeCCCCccCC-CC----CCh-HHHHHHHHHHHHHhh
Q 004141 728 RALREKGVETKVIVFPNDVHGIE-RP----QSD-FESFLNIGLWFKKYC 770 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~-~~----~~~-~~~~~~i~~fl~~~L 770 (771)
+.+++.|++++++++++++|.+. .. ... .++++.+.+||+++.
T Consensus 310 ~~l~~~g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 310 RRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp HHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876 21 222 577889999998763
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-21 Score=186.97 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=132.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHH---
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 609 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 609 (771)
..+.+++||++||.+.+ ...+...++.|...|+.|++|+.+|...|+..+..... .....+++..+.++.+++
T Consensus 18 ~~~a~~~Vv~lHG~G~~--~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 93 (210)
T 4h0c_A 18 VQRAKKAVVMLHGRGGT--AADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIE 93 (210)
T ss_dssp TTTCSEEEEEECCTTCC--HHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEeCCCCC--HHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHH
Confidence 34567899999995543 22444455666778999999999876544433221111 111123343444443332
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHH
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
...++++||+|+|+|+||++++.++.++|++++++|+.++...... . . ..
T Consensus 94 ~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~---------~-----------------~-~~--- 143 (210)
T 4h0c_A 94 AQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQE---------L-----------------A-IG--- 143 (210)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSS---------C-----------------C-GG---
T ss_pred HhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChh---------h-----------------h-hh---
Confidence 2348999999999999999999999999999999998877431000 0 0 00
Q ss_pred HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.......++|+|++||++|++||++.++++++.|++.|.++++++||+.+|.+. .+.++.+.+||.
T Consensus 144 -------~~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~-----~~el~~i~~wL~ 209 (210)
T 4h0c_A 144 -------NYKGDFKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTIS-----GDEIQLVNNTIL 209 (210)
T ss_dssp -------GCCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCC-----HHHHHHHHHTTT
T ss_pred -------hhhhhccCCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcC-----HHHHHHHHHHHc
Confidence 000112247999999999999999999999999999999999999999999875 345677777775
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-20 Score=215.44 Aligned_cols=312 Identities=12% Similarity=0.087 Sum_probs=189.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
.+.+++||+ +++.. ..+.++++++.+ ++.++++... ......+..++|||||++|||.+...+
T Consensus 20 ~~~~s~dg~-~~~~~---------~d~~i~~~~~~~--g~~~~~~~~~-~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQE-YLHQS---------ADNNIVLYNIET--GQSYTILSNR-TMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSE-EEEEC---------TTSCEEEEESSS--CCEEEEECHH-HHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCe-EEEEc---------CCCCEEEEEcCC--CcEEEEEccc-cccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 445578994 44432 124788887643 3455554332 000012678999999999999876321
Q ss_pred -CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 122 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 -~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
....+++.+ .+++......+.... ..++|||||++|||+.
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~~~~----------~~~~~SPDG~~la~~~---------------------------- 128 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELPRPI----------QYLCWSPVGSKLAYVY---------------------------- 128 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCSSB----------CCEEECSSTTCEEEEE----------------------------
T ss_pred ecceEEEEEECCCCccccceecCccc----------ccceECCCCCEEEEEE----------------------------
Confidence 123456555 444430001112222 5899999999999973
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC-------------------ccceEEEecCCCCCccEEEE
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-------------------SVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-------------------~~~~~~wspDg~~~~~~l~~ 260 (771)
...|++||+.+++.++++ .... ....++|||||+. |+|
T Consensus 129 -----------------~~~i~~~~~~~g~~~~l~--~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~----la~ 185 (719)
T 1z68_A 129 -----------------QNNIYLKQRPGDPPFQIT--FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF----LAY 185 (719)
T ss_dssp -----------------TTEEEEESSTTSCCEECC--CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE----EEE
T ss_pred -----------------CCeEEEEeCCCCCcEEEe--cCCCcCCeEcccccceeeeecccCcccEEECCCCCE----EEE
Confidence 258999999999888873 2211 1147999999999 999
Q ss_pred EeecCccee-e--------------eeeee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcce---ec------
Q 004141 261 VGWSSETRK-L--------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NL------ 312 (771)
Q Consensus 261 ~~~~~~~~~-~--------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~l------ 312 (771)
.+......+ . ...|. .+....|+++|+ ++++.. ++
T Consensus 186 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~-----------------~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 186 AEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT-----------------TYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp EEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES-----------------SCHHHHCCEECCCCHHH
T ss_pred EEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC-----------------CCCCccceeEccCCccC
Confidence 885432100 0 00000 012337999998 555532 33
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeee----cCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004141 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID----WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
..+...+.+++|||||+ ++|..... + ....+|+++| +.+++.+.++..... ..+... ..
T Consensus 249 ~~~~~~~~~~~~SpD~~-~~~~~~~~----~--~~~~~l~~~d~~~~~~~g~~~~~~~~~~~-------~~~~~~---~~ 311 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDER-VCLQWLKR----V--QNVSVLSICDFREDWQTWDCPKTQEHIEE-------SRTGWA---GG 311 (719)
T ss_dssp HTSCEEEEEEEESSSSE-EEEEEEES----S--TTEEEEEEEEECSSSSSEECCGGGEEEEE-------CSSSCS---SS
T ss_pred CCCcceEEEeEEeCCCe-EEEEEecc----c--cCeEEEEEEcccCCCCCCceEEEEecccc-------cCCceE---cc
Confidence 23455678999999976 55553322 1 2246799999 777766554420000 000000 00
Q ss_pred CCCCCCccccCCCEEEEE-eeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC---CCCCCeEEEEE
Q 004141 389 SSILSNPWLSDGCTMLLS-SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS---PVDVPQVKYGY 464 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~-~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~---~~~p~~l~~~~ 464 (771)
.....+.|||||+.|++. +..++..+||.+++++++.+.|+.....+....++ +++.|+++... ......||..+
T Consensus 312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 001267899999988874 44567788999999999988888765544455666 99999988864 12345677777
Q ss_pred ec
Q 004141 465 FV 466 (771)
Q Consensus 465 ~~ 466 (771)
+.
T Consensus 391 ~~ 392 (719)
T 1z68_A 391 IG 392 (719)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=178.84 Aligned_cols=191 Identities=11% Similarity=0.098 Sum_probs=138.7
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh----------cCCCCccc
Q 004141 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----------SLPGKVGS 594 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~----------~~~~~~~~ 594 (771)
++.|. ..++.| ||++||.+.+ ...|...+..|+ .+|.|+++|.++....+..|.. ........
T Consensus 8 ~~~~~---~~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~ 80 (209)
T 3og9_A 8 VFKAG---RKDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLD 80 (209)
T ss_dssp EEECC---CTTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHH
T ss_pred EEeCC---CCCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHH
Confidence 44554 345678 9999997655 446777777776 7999999996532111111111 00000011
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+++.+.++.+.++..+|+++++|+||||||.+++.++.++|++++++|+.+|......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------- 141 (209)
T 3og9_A 81 EETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF------------------- 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc-------------------
Confidence 2245556666666666567889999999999999999999999999999999988642100
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
.......++|+|++||++|+++|+++++++++.|++.+.++++.+++ ++|.+.
T Consensus 142 ----------------------~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~-~gH~~~---- 194 (209)
T 3og9_A 142 ----------------------EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIYESS-LGHQLT---- 194 (209)
T ss_dssp ----------------------CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCEEEEEECS-STTSCC----
T ss_pred ----------------------cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCceEEEEcC-CCCcCC----
Confidence 00123456899999999999999999999999999999999999997 799884
Q ss_pred hHHHHHHHHHHHHHh
Q 004141 755 DFESFLNIGLWFKKY 769 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~ 769 (771)
.+....+.+||++.
T Consensus 195 -~~~~~~~~~~l~~~ 208 (209)
T 3og9_A 195 -QEEVLAAKKWLTET 208 (209)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhh
Confidence 46678999999874
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=210.12 Aligned_cols=246 Identities=13% Similarity=0.102 Sum_probs=168.6
Q ss_pred ccCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC----------------------------------------
Q 004141 514 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---------------------------------------- 551 (771)
Q Consensus 514 ~~~~g~~--l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~---------------------------------------- 551 (771)
...||.+ |.+.+|+|++ .++.|+||..||-+....
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 5678999 9999999984 468999998887322100
Q ss_pred ------CCcc-----hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC---------
Q 004141 552 ------LSSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--------- 611 (771)
Q Consensus 552 ------~~~~-----~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--------- 611 (771)
...| ......|+++||+|+++|+||.++++.. ....+..+.+|+.++++||..+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~-----~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSC-----CCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCc-----CCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 0111 1345789999999999999996655432 22333456899999999998431
Q ss_pred -----CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC-------CCCcchh----hhhccCCC
Q 004141 612 -----LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPDWCY----VESYGSKG 675 (771)
Q Consensus 612 -----~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-------~~~~~~~----~~~~~~~~ 675 (771)
..+.+||+|+|+||||++++.+|.++|+.++++|+.+|+.++....... ..+.+.. ...+....
T Consensus 331 ~~v~q~~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~~ 410 (763)
T 1lns_A 331 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 410 (763)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccCCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhhc
Confidence 1345799999999999999999999999999999999988654432211 0111100 00000000
Q ss_pred C---------------cc-----CCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 676 K---------------DS-----FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 676 ~---------------~~-----~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
. .. ....+. ....+...++...+.+|++|+|++||..|.++|+.++.+++++++. +.
T Consensus 411 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~-~~ 487 (763)
T 1lns_A 411 DGADFLKGNAEYEKRLAEMTAALDRKSGD--YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GH 487 (763)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTTCC--CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TC
T ss_pred CcchhhhHHHHHHHHHHHHHhhhhhccCc--hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc-CC
Confidence 0 00 000000 0123345667788999999999999999999999999999999987 66
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+.++++ ++++|.........++.+.+.+||++|||
T Consensus 488 ~~~l~i-~~~gH~~~~~~~~~~~~~~i~~Ffd~~Lk 522 (763)
T 1lns_A 488 AKHAFL-HRGAHIYMNSWQSIDFSETINAYFVAKLL 522 (763)
T ss_dssp CEEEEE-ESCSSCCCTTBSSCCHHHHHHHHHHHHHT
T ss_pred CeEEEE-eCCcccCccccchHHHHHHHHHHHHHHhc
Confidence 676655 56789864332233568899999999986
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=182.66 Aligned_cols=195 Identities=13% Similarity=0.118 Sum_probs=142.4
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEEC-------------------CCCCCCCChhhh
Q 004141 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-------------------YRGSLGFGEEAL 585 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d-------------------~rG~~~~g~~~~ 585 (771)
++.|+ ..++.|+||++||.+.. ...|...+..|++.||.|+++| ++|. ....
T Consensus 14 ~~~p~---~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~---~~~~- 84 (232)
T 1fj2_A 14 AIVPA---ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGL---SPDS- 84 (232)
T ss_dssp EEECC---SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCC---STTC-
T ss_pred cccCC---CCCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccC---Cccc-
Confidence 45565 45678999999997654 3356667777777899999984 4442 0000
Q ss_pred hcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc
Q 004141 586 QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 665 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~ 665 (771)
...........+++.++++++.+ ..++.++++|+|||+||.+++.++.++|++++++|+.+|........
T Consensus 85 -~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~-------- 154 (232)
T 1fj2_A 85 -QEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF-------- 154 (232)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------
T ss_pred -ccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc--------
Confidence 00000011124556666666655 45777999999999999999999999999999999999975432110
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC--EEEEEeC
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE--TKVIVFP 743 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~--~~~~~~~ 743 (771)
+ .....+..+++|+|+++|++|..++++.++++++.+++.+.+ +++++++
T Consensus 155 -----------------~-----------~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 206 (232)
T 1fj2_A 155 -----------------P-----------QGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYE 206 (232)
T ss_dssp -----------------C-----------SSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEET
T ss_pred -----------------c-----------ccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 0 001234567899999999999999999999999999988854 9999999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+++|.+. .+.++.+.+||+++|+
T Consensus 207 ~~~H~~~-----~~~~~~i~~~l~~~l~ 229 (232)
T 1fj2_A 207 GMMHSSC-----QQEMMDVKQFIDKLLP 229 (232)
T ss_dssp TCCSSCC-----HHHHHHHHHHHHHHSC
T ss_pred CCCcccC-----HHHHHHHHHHHHHhcC
Confidence 9999883 3556899999999874
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=183.40 Aligned_cols=211 Identities=15% Similarity=0.072 Sum_probs=153.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC---------
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--------- 591 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~--------- 591 (771)
+..+++.|.+ +.|+||++||.+.. ...|...+..|+++||.|+++|+||.+..... .....
T Consensus 13 ~~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~---~~~~~~~~~~~~~~ 82 (238)
T 1ufo_A 13 LSVLARIPEA-----PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGP---PPSSKSPRYVEEVY 82 (238)
T ss_dssp EEEEEEEESS-----CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCC---CCCTTSTTHHHHHH
T ss_pred EEEEEEecCC-----CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCCCccCCCC---CCcccccchhhhHH
Confidence 4445777752 67999999997654 23455566778888999999999994432211 10000
Q ss_pred -ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 592 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 592 -~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
......+|+.++++++.+.+. ++++++|||+||.+++.++.++|+.++++++.++...... ....
T Consensus 83 ~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~---- 148 (238)
T 1ufo_A 83 RVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL-------PQGQ---- 148 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC-------CTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh-------hhhh----
Confidence 011236788888888876642 7899999999999999999999999999888776532110 0000
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHH-hCCC-CEEEEEeCCCCc
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALR-EKGV-ETKVIVFPNDVH 747 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~-~~g~-~~~~~~~~~~~H 747 (771)
...+ .....+...++...+.++ ++|+|+++|++|..+|++.++.+++.+. ..+. +++++++++++|
T Consensus 149 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H 217 (238)
T 1ufo_A 149 ---------VVED--PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGH 217 (238)
T ss_dssp ---------CCCC--HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCS
T ss_pred ---------ccCC--cccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHhhcCCCCceEEEEeCCCCc
Confidence 0111 224445566677777788 8999999999999999999999999999 7777 899999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhC
Q 004141 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.+. .+..+.+.+||.++|+
T Consensus 218 ~~~-----~~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 218 TLT-----PLMARVGLAFLEHWLE 236 (238)
T ss_dssp SCC-----HHHHHHHHHHHHHHHH
T ss_pred ccH-----HHHHHHHHHHHHHHHh
Confidence 875 3567889999998873
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-19 Score=180.45 Aligned_cols=263 Identities=15% Similarity=0.142 Sum_probs=181.3
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CcceEEEecCCccc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVH 146 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 146 (771)
...+.|+++++. .++..++.... ..+..++|||||++|++..+. .++.++ .+ ++..++......
T Consensus 19 ~~~~~i~~~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~-- 84 (297)
T 2ojh_A 19 SMRSSIEIFNIR--TRKMRVVWQTP-----ELFEAPNWSPDGKYLLLNSEG-----LLYRLSLAGDPSPEKVDTGFAT-- 84 (297)
T ss_dssp CCCEEEEEEETT--TTEEEEEEEES-----SCCEEEEECTTSSEEEEEETT-----EEEEEESSSCCSCEECCCTTCC--
T ss_pred CcceeEEEEeCC--CCceeeeccCC-----cceEeeEECCCCCEEEEEcCC-----eEEEEeCCCCCCceEecccccc--
Confidence 345677777753 23444444332 557899999999999987532 466655 44 554444332210
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
..+..+.|||||++|++...... ....||++++.
T Consensus 85 ------~~~~~~~~spdg~~l~~~~~~~~----------------------------------------~~~~l~~~~~~ 118 (297)
T 2ojh_A 85 ------ICNNDHGISPDGALYAISDKVEF----------------------------------------GKSAIYLLPST 118 (297)
T ss_dssp ------CBCSCCEECTTSSEEEEEECTTT----------------------------------------SSCEEEEEETT
T ss_pred ------ccccceEECCCCCEEEEEEeCCC----------------------------------------CcceEEEEECC
Confidence 11258999999999999864321 34789999999
Q ss_pred CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004141 227 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 227 ~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
+++.+.+ .... .+..+.|||||+. |+|++... ....||.+++ .+
T Consensus 119 ~~~~~~~--~~~~-~~~~~~~spdg~~----l~~~~~~~------------~~~~l~~~~~-----------------~~ 162 (297)
T 2ojh_A 119 GGTPRLM--TKNL-PSYWHGWSPDGKS----FTYCGIRD------------QVFDIYSMDI-----------------DS 162 (297)
T ss_dssp CCCCEEC--CSSS-SEEEEEECTTSSE----EEEEEEET------------TEEEEEEEET-----------------TT
T ss_pred CCceEEe--ecCC-CccceEECCCCCE----EEEEECCC------------CceEEEEEEC-----------------CC
Confidence 9888777 3333 3677899999998 99877432 2237888887 77
Q ss_pred CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 307 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 307 ~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
++.+.+......+..+.|||||+.|++.+..+ +..+||.++..++....+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~----------------- 217 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT--------GQMQIWRVRVDGSSVERITDSAY----------------- 217 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCEEECCCCSE-----------------
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCC--------CCccEEEECCCCCCcEEEecCCc-----------------
Confidence 77788887777789999999999999987643 14578888776654433322111
Q ss_pred ccCCCCCCccccCCCEEEEEeeeC--------CeeEEEEEECCCCcEEEecC---CCCCceeeEEeecCCEEEEEEeCCC
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWG--------SSQVIISVNVSSGELLRITP---AESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~---~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
....+.|+|||+.|++.+... ....|+.+|+++++.+.+.. ....+....|+++++.|+++.....
T Consensus 218 ---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 218 ---GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ---EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ---ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 123568999999998887654 33679999999988776653 2334556789999999998876553
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=189.33 Aligned_cols=192 Identities=15% Similarity=0.158 Sum_probs=146.0
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~-~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..+...+|.|.+ ++.|+||++|||++. .....|...+..|+++||.|+++|+||++.+. ....
T Consensus 48 ~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~-----------~~~~ 112 (262)
T 2pbl_A 48 GDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISEI 112 (262)
T ss_dssp STTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHHH
T ss_pred CCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC-----------hHHH
Confidence 3445566888863 578999999997643 23346677788899999999999999864321 1234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.+|+.++++++..+.. ++++|+||||||.+++.++.++ |++++++|+.+|+.++....... ....
T Consensus 113 ~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~------~~~~ 183 (262)
T 2pbl_A 113 TQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEK 183 (262)
T ss_dssp HHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHH
T ss_pred HHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhh------hhhh
Confidence 7899999999988742 7899999999999999999887 88999999999987654321110 0000
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
+. .....+...+|...+.++++|+|+++|++|..+++++++.+++.+. ++++++++++|...
T Consensus 184 ~~-------------~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~H~~~ 245 (262)
T 2pbl_A 184 FK-------------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHHFNV 245 (262)
T ss_dssp HC-------------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCTTTT
T ss_pred hC-------------CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC-----CeEEEeCCCCcchH
Confidence 00 1123445667777788899999999999999999999999999886 78999999999766
Q ss_pred C
Q 004141 751 R 751 (771)
Q Consensus 751 ~ 751 (771)
.
T Consensus 246 ~ 246 (262)
T 2pbl_A 246 I 246 (262)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-20 Score=185.19 Aligned_cols=220 Identities=17% Similarity=0.126 Sum_probs=149.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|+||++||.+.+ ...|...+..|+++||.|+++|+||.+.......... . ......+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~-~-~~~~~~~d~~~~i~~l~~~---- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGHGTVEPLDILTK-G-NPDIWWAESSAAVAHMTAK---- 91 (251)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTCSSSCTHHHHHH-C-CHHHHHHHHHHHHHHHHTT----
T ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCCCCCChhhhcCc-c-cHHHHHHHHHHHHHHHHHh----
Confidence 356889999997665 3467888999999999999999999544311110000 0 1112257788888888765
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh-------
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED------- 687 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 687 (771)
.++++|+|||+||.+++.++.++|++++++++.+|............ . .+...+. ......+....
T Consensus 92 ~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~-~--~~~~~~~----~~~~~~~~~~~~~~~~~~ 164 (251)
T 3dkr_A 92 YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGF-L--KYAEYMN----RLAGKSDESTQILAYLPG 164 (251)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHH-H--HHHHHHH----HHHTCCCCHHHHHHHHHH
T ss_pred cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHH-H--HHHHHHH----hhcccCcchhhHHhhhHH
Confidence 57999999999999999999999999999999998865211000000 0 0000000 00000000000
Q ss_pred -HHHHh--hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004141 688 -LTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 688 -~~~~~--~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
...+. .......+.++++|+|+++|++|..+|++.+..+++.+... .+++++++++++|.+.......++.+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~ 243 (251)
T 3dkr_A 165 QLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALINA-ARVDFHWYDDAKHVITVNSAHHALEEDVIA 243 (251)
T ss_dssp HHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTTC-SCEEEEEETTCCSCTTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcCC-CCceEEEeCCCCcccccccchhHHHHHHHH
Confidence 00000 01123456778999999999999999999999998888764 468999999999998776667789999999
Q ss_pred HHHHhh
Q 004141 765 WFKKYC 770 (771)
Q Consensus 765 fl~~~L 770 (771)
||++..
T Consensus 244 fl~~~~ 249 (251)
T 3dkr_A 244 FMQQEN 249 (251)
T ss_dssp HHHTTC
T ss_pred HHHhhc
Confidence 998753
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=174.98 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=147.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+|.++++++|.|.+ +.|+||++||++.. ...|.. .+..|+++||.|+++|+||. |.++....+ .
T Consensus 10 ~~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g~---g~s~~~~~~--~ 77 (207)
T 3bdi_A 10 DVNGTRVFQRKMVTDS-----NRRSIALFHGYSFT--SMDWDKADLFNNYSKIGYNVYAPDYPGF---GRSASSEKY--G 77 (207)
T ss_dssp EETTEEEEEEEECCTT-----CCEEEEEECCTTCC--GGGGGGGTHHHHHHTTTEEEEEECCTTS---TTSCCCTTT--C
T ss_pred eeCCcEEEEEEEeccC-----CCCeEEEECCCCCC--ccccchHHHHHHHHhCCCeEEEEcCCcc---cccCcccCC--C
Confidence 3468899999999863 56899999997765 346777 88999999999999999994 443110001 1
Q ss_pred ccc-chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 593 GSQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 593 ~~~-~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
... ..+++.+.+..+++. .+.++++++|||+||.+++.++.++|++++++++.+|..... +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~----------~------ 139 (207)
T 3bdi_A 78 IDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES----------L------ 139 (207)
T ss_dssp CTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG----------G------
T ss_pred CCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc----------h------
Confidence 122 567777777777766 345799999999999999999999999999999998862110 0
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
...+.++++|+|+++|++|..++++..+.+.+.+. +++++++++++|.+..
T Consensus 140 -------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~~H~~~~ 190 (207)
T 3bdi_A 140 -------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIIS----GSRLEIVEGSGHPVYI 190 (207)
T ss_dssp -------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHST----TCEEEEETTCCSCHHH
T ss_pred -------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcC----CceEEEeCCCCCCccc
Confidence 12345677999999999999999998888887763 4789999999998653
Q ss_pred CCChHHHHHHHHHHHHH
Q 004141 752 PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl~~ 768 (771)
. ...++.+.+.+||++
T Consensus 191 ~-~~~~~~~~i~~fl~~ 206 (207)
T 3bdi_A 191 E-KPEEFVRITVDFLRN 206 (207)
T ss_dssp H-SHHHHHHHHHHHHHT
T ss_pred c-CHHHHHHHHHHHHhh
Confidence 3 345677788888864
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=176.96 Aligned_cols=197 Identities=15% Similarity=0.149 Sum_probs=141.4
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCC-----CCCC-hhhhhc-C---CCCc
Q 004141 525 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGS-----LGFG-EEALQS-L---PGKV 592 (771)
Q Consensus 525 ~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vv~~d~rG~-----~~~g-~~~~~~-~---~~~~ 592 (771)
++.|+ ..++.|+||++||.+.. ...|...+..|++ .||.|+++|++|. .+++ ..|... . ....
T Consensus 5 ~~~~~---~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~ 79 (218)
T 1auo_A 5 LILQP---AKPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSI 79 (218)
T ss_dssp EEECC---SSCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEE
T ss_pred eecCC---CCCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccccc
Confidence 44454 45678999999997755 4467788889988 9999999997741 0000 000000 0 0001
Q ss_pred cccc----hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh-hCCCceeEEEecCCccchhhhhcCCCCCcchh
Q 004141 593 GSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 593 ~~~~----~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
.... .+++...++++.+ ..++.++++++|||+||.+++.++. ++|++++++|+.+|.... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~------~~~----- 147 (218)
T 1auo_A 80 SLEELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPT------FGD----- 147 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTT------CCT-----
T ss_pred chHHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCC------chh-----
Confidence 1112 3444455555544 3477889999999999999999999 999999999999997543 000
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
.. ......+++|+|+++|++|..+|++.++.+++.+++.|.++++++++ ++|
T Consensus 148 ----~~-----------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH 199 (218)
T 1auo_A 148 ----EL-----------------------ELSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGH 199 (218)
T ss_dssp ----TC-----------------------CCCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSS
T ss_pred ----hh-----------------------hhhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHhCCCceEEEEec-CCC
Confidence 00 00113457899999999999999999999999999988899999999 999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhC
Q 004141 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.+. .+..+.+.+||.++|+
T Consensus 200 ~~~-----~~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 200 EVL-----PQEIHDIGAWLAARLG 218 (218)
T ss_dssp SCC-----HHHHHHHHHHHHHHHC
T ss_pred ccC-----HHHHHHHHHHHHHHhC
Confidence 875 3567899999999875
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-19 Score=174.03 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=138.5
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCCC----------------CCChhhhhcCCCCccc
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSL----------------GFGEEALQSLPGKVGS 594 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vv~~d~rG~~----------------~~g~~~~~~~~~~~~~ 594 (771)
+.++.|+||++||++.. ...|...+..|++ .||.|+++|++|.+ ++|.+ .....
T Consensus 20 ~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~------~~~~~ 91 (226)
T 3cn9_A 20 APNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPA------RAIDE 91 (226)
T ss_dssp CTTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSST------TCBCH
T ss_pred CCCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCcccccccccccccc------ccccc
Confidence 55678999999997755 3467788888988 99999999988521 12211 01111
Q ss_pred cchh----hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh-hCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 595 QDVN----DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 595 ~~~~----D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~-~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
..+. ++...++.+.+ ..++.++++|+|||+||.+++.++. ++|++++++|+.+|........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------ 158 (226)
T 3cn9_A 92 DQLNASADQVIALIDEQRA-KGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------ 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC------------
T ss_pred hhHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh------------
Confidence 2233 34444444433 2467789999999999999999999 9999999999999875432110
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.. ....+++|+|+++|++|..+|++.++++++.+...|.++++++++ ++|.+
T Consensus 159 -----------------------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~gH~~ 210 (226)
T 3cn9_A 159 -----------------------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQAQGVEVGWHDYP-MGHEV 210 (226)
T ss_dssp -----------------------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEES-CCSSC
T ss_pred -----------------------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHHcCCceeEEEec-CCCCc
Confidence 00 013567899999999999999999999999999988899999999 99987
Q ss_pred CCCCChHHHHHHHHHHHHHhh
Q 004141 750 ERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~L 770 (771)
. .+..+.+.+||+++|
T Consensus 211 ~-----~~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 211 S-----LEEIHDIGAWLRKRL 226 (226)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred c-----hhhHHHHHHHHHhhC
Confidence 4 356788999999875
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-19 Score=179.93 Aligned_cols=219 Identities=17% Similarity=0.218 Sum_probs=148.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|+||++||.+.. ...|...+..|+++||.|+++|+||.+...... .. .......+|+.++++++..+ .
T Consensus 39 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~G~s~~~~---~~-~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDM---ER-TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTTCSSCHHHH---HT-CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCCCCCCcccc---cc-CCHHHHHHHHHHHHHHHHhh----C
Confidence 45999999997665 346788899999999999999999954432211 11 11122367788888887655 5
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC----CCcchhhhhccCCCCc------cCCCCCCh
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----IPDWCYVESYGSKGKD------SFTESPSV 685 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~~ 685 (771)
++++|+|||+||.+++.++.++|+ ++++|+.+|............ ...+. ..+...... .+...+ .
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 184 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYL--DSIGSDLKNPDVKELAYEKTP-T 184 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEE--ECCCCCCSCTTCCCCCCSEEE-H
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHH--HHhCccccccchHhhcccccC-h
Confidence 789999999999999999999999 999999999776543221110 11110 000100000 000000 0
Q ss_pred hhHHHHh--hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 686 EDLTRFH--SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 686 ~~~~~~~--~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
.....+. .......+.++++|+|+++|++|..+|++.+..+++.+.. .+++++++++++|.+.......++.+.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~~~~~~~~~~~i~ 262 (270)
T 3rm3_A 185 ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS--TEKEIVRLRNSYHVATLDYDQPMIIERSL 262 (270)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC--SSEEEEEESSCCSCGGGSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC--CcceEEEeCCCCcccccCccHHHHHHHHH
Confidence 1011110 0112245677899999999999999999999998887754 35799999999999876665568899999
Q ss_pred HHHHHhh
Q 004141 764 LWFKKYC 770 (771)
Q Consensus 764 ~fl~~~L 770 (771)
+||+++.
T Consensus 263 ~fl~~~~ 269 (270)
T 3rm3_A 263 EFFAKHA 269 (270)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9999875
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-19 Score=183.42 Aligned_cols=238 Identities=14% Similarity=0.245 Sum_probs=149.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+...++.+.. ..+..|+||++||++.. ...|...+..|+++||.|+++|+||. |.+... ......
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~---G~s~~~----~~~~~~ 96 (315)
T 4f0j_A 28 QGQPLSMAYLDVAP--KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVGF---CKSSKP----AHYQYS 96 (315)
T ss_dssp TTEEEEEEEEEECC--SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC----SSCCCC
T ss_pred CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCCC---CCCCCC----CccccC
Confidence 34445544444432 34567999999997765 34688889999999999999999994 443211 112345
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC---cch-------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP---DWC------- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~---~~~------- 666 (771)
.+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|.............. .+.
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (315)
T 4f0j_A 97 FQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWRSVDDWYRRDLQTS 174 (315)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhhhhHHHHhhcccCC
Confidence 77777777777776 355789999999999999999999999999999999864211100000000 000
Q ss_pred ------hhh-hccCC-CCcc----------CCCCCChh--------hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCc
Q 004141 667 ------YVE-SYGSK-GKDS----------FTESPSVE--------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 720 (771)
Q Consensus 667 ------~~~-~~~~~-~~~~----------~~~~~~~~--------~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~ 720 (771)
+.. .+... .... ........ ........+....+.++++|+|+++|++|..+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~lii~G~~D~~~p~ 254 (315)
T 4f0j_A 175 AEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRLQMPTLLLIGEKDNTAIG 254 (315)
T ss_dssp HHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCCCCTT
T ss_pred hHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccCCCCeEEEEecCCCcCcc
Confidence 000 00000 0000 00000000 0111122334456788999999999999999994
Q ss_pred HHH------------HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 721 SNG------------LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 721 ~~~------------~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++. .+..+.+.+...++++++++++||.+.. +...++.+.|.+||++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~ 313 (315)
T 4f0j_A 255 KDAAPAELKARLGNYAQLGKDAARRIPQATLVEFPDLGHTPQI-QAPERFHQALLEGLQT 313 (315)
T ss_dssp GGGSCHHHHTTSCCHHHHHHHHHHHSTTEEEEEETTCCSCHHH-HSHHHHHHHHHHHHCC
T ss_pred ccccccccccccccchhhhhHHHhhcCCceEEEeCCCCcchhh-hCHHHHHHHHHHHhcc
Confidence 433 3444444444456899999999997653 3445778888888864
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=182.77 Aligned_cols=198 Identities=19% Similarity=0.206 Sum_probs=141.0
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCC---CCCCCChhhhhc--CCCCcccc-
Q 004141 524 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYR---GSLGFGEEALQS--LPGKVGSQ- 595 (771)
Q Consensus 524 ~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~r---G~~~~g~~~~~~--~~~~~~~~- 595 (771)
+...|. .+.++.|+||++||.+.+ ...|...++.|+.+ ++.+++|+-+ ...+.|..|... ........
T Consensus 55 y~~~p~--~~~~~~plVI~LHG~G~~--~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~ 130 (285)
T 4fhz_A 55 FGRRGA--APGEATSLVVFLHGYGAD--GADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAA 130 (285)
T ss_dssp EEEEES--CTTCCSEEEEEECCTTBC--HHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHH
T ss_pred eecCCC--CCCCCCcEEEEEcCCCCC--HHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchh
Confidence 344554 267788999999995543 23444455666543 8899998743 112234443210 00000011
Q ss_pred ------chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 596 ------DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 596 ------~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
...++.+.++.+.++..+|++||+|+|+|+||.+++.++.++|+.++++|+.++....
T Consensus 131 ~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~---------------- 194 (285)
T 4fhz_A 131 AEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA---------------- 194 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC----------------
Confidence 1334556666666666699999999999999999999999999999999988764210
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.+... .....++|+|++||+.|++||++.++++++.|++.|.++++++|++.+|.+
T Consensus 195 ---------------~~~~~---------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~~~~~~y~g~gH~i 250 (285)
T 4fhz_A 195 ---------------PERLA---------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYGHVMKGTGHGI 250 (285)
T ss_dssp ---------------HHHHH---------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCCEEEEEETTCCSSC
T ss_pred ---------------chhhh---------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
Confidence 01000 012346899999999999999999999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHHHhh
Q 004141 750 ERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~L 770 (771)
. .+.+..+.+||+++|
T Consensus 251 ~-----~~~l~~~~~fL~~~L 266 (285)
T 4fhz_A 251 A-----PDGLSVALAFLKERL 266 (285)
T ss_dssp C-----HHHHHHHHHHHHHHC
T ss_pred C-----HHHHHHHHHHHHHHC
Confidence 5 456789999999987
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=193.05 Aligned_cols=229 Identities=14% Similarity=0.094 Sum_probs=151.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++.++++.|. ..++.|+||++||.+... ...+......|+++||.|+++|+|| +|.+.... ...+
T Consensus 176 ~g~~l~~~~~~P~---~~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G---~G~s~~~~-----~~~~ 243 (415)
T 3mve_A 176 EKGKITAHLHLTN---TDKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPS---VGYSSKYP-----LTED 243 (415)
T ss_dssp SSSEEEEEEEESC---SSSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTT---SGGGTTSC-----CCSC
T ss_pred CCEEEEEEEEecC---CCCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCC-----CCCC
Confidence 5788999999997 356789999999966442 1234445677889999999999999 45443211 1112
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-h-cCCCCCcchhhhhccC
Q 004141 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-V-GTTDIPDWCYVESYGS 673 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~-~-~~~~~~~~~~~~~~~~ 673 (771)
. .....+++++.....+|.++|+|+|||+||++++.++..+|++++++|+.+|+.+.... . .....+. .+...+..
T Consensus 244 ~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 322 (415)
T 3mve_A 244 YSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK-MYLDVLAS 322 (415)
T ss_dssp TTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTSCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHhHH-HHHHHHHH
Confidence 2 23356677777776678899999999999999999999999999999999998642211 0 0000010 00000000
Q ss_pred CCCccCCCCC-Chh-hHHHHhhcCcccc----cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CC
Q 004141 674 KGKDSFTESP-SVE-DLTRFHSKSPISH----ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DV 746 (771)
Q Consensus 674 ~~~~~~~~~~-~~~-~~~~~~~~sp~~~----~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~ 746 (771)
.+...+ ... ....+...++... +.++++|+|+++|++|.++|++++..+.+ .+.+++++++++ ..
T Consensus 323 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~----~~~~~~l~~i~g~~~ 394 (415)
T 3mve_A 323 ----RLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAF----FSTYGKAKKISSKTI 394 (415)
T ss_dssp ----HTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHH----TBTTCEEEEECCCSH
T ss_pred ----HhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHH----hCCCceEEEecCCCc
Confidence 000000 111 1112222333221 45788999999999999999988877665 456689999998 33
Q ss_pred ccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 747 HGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|. ...+.+..+.+||+++|+
T Consensus 395 h~-----~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 395 TQ-----GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHT
T ss_pred cc-----chHHHHHHHHHHHHHHhc
Confidence 32 345788899999999874
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-19 Score=175.94 Aligned_cols=198 Identities=16% Similarity=0.126 Sum_probs=142.2
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCC----c
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGK----V 592 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~~~----~ 592 (771)
+.++...++.|. ....|+||++||++.. ...|......|++ ||.|+++|.++..+.|..+.... ... .
T Consensus 15 ~~~l~~~~~~~~----~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 15 DLAFPYRLLGAG----KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSSCEEEESTT----SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCCceEEEeCCC----CCCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 344555555553 2234999999997655 3467777777765 99999999876322122221110 000 0
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
.....+++.+.++++.++..+++++++|+|||+||.+++.++.++|++++++|+.+|.....
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------------ 149 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------ 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcc------------------
Confidence 01224566677777766645788999999999999999999999999999999998864210
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
. . .....+++|+|+++|++|..+|++.++ +++.+++.|.++++++++ ++|.+.
T Consensus 150 ~---------~--------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~g~~~~~~~~~-~gH~~~-- 202 (223)
T 3b5e_A 150 H---------V--------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLSRHGAEVDARIIP-SGHDIG-- 202 (223)
T ss_dssp S---------C--------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHHHTTCEEEEEEES-CCSCCC--
T ss_pred c---------c--------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHHHCCCceEEEEec-CCCCcC--
Confidence 0 0 012345789999999999999999999 999999999999999999 999875
Q ss_pred CChHHHHHHHHHHHHHhh
Q 004141 753 QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~~L 770 (771)
.+..+.+.+||++.+
T Consensus 203 ---~~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 203 ---DPDAAIVRQWLAGPI 217 (223)
T ss_dssp ---HHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHhhh
Confidence 345678999997654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=193.73 Aligned_cols=261 Identities=16% Similarity=0.118 Sum_probs=171.3
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...++|||||++|||+...+ +..++|.++ .+++.++++...... ...+.|||||++|+|++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~---------~~~~~~spdg~~l~~~~~~------ 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDN---------TFGGFISTDERAFFYVKNE------ 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBC---------TTTCEECTTSSEEEEEETT------
T ss_pred eecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCc---------cccceECCCCCEEEEEEcC------
Confidence 56789999999999998764 556788887 555555544322211 1248899999999998532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
.+|+++|+++++.+.+. .... .|+|||+. |+
T Consensus 102 --------------------------------------~~l~~~d~~~~~~~~~~--~~~~-----~~~~~g~~----l~ 132 (396)
T 3c5m_A 102 --------------------------------------LNLMKVDLETLEEQVIY--TVDE-----EWKGYGTW----VA 132 (396)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEE--ECCT-----TEEEEEEE----EE
T ss_pred --------------------------------------CcEEEEECCCCCcEEEE--eccc-----ccCCCCCE----EE
Confidence 36999999999888773 2111 16677766 66
Q ss_pred EEeec-------------Ccceeeeeee--eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceee
Q 004141 260 FVGWS-------------SETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 324 (771)
Q Consensus 260 ~~~~~-------------~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~ 324 (771)
|.+.. .+...+.... .......||++|+ .+++.+.++.....+..+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~-----------------~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI-----------------ETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET-----------------TTCCEEEEEEESSCEEEEEE
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC-----------------CCCcEEeeccCCcccccceE
Confidence 64211 0000000000 0024458999998 77888877766666888999
Q ss_pred cC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 325 SP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 325 Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
|| ||++|+|.+... ......+|+++|+.+++.+.++..... ..+..+.|||||+.|
T Consensus 196 sp~dg~~l~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~~~~------------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGP-----HDLVDARMWLVNEDGSNVRKIKEHAEG------------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp ETTEEEEEEEEECSC-----SSSCSCCCEEEETTSCCCEESSCCCTT------------------EEEEEEEECTTSSCE
T ss_pred CCCCCCEEEEEecCC-----CCCCCceEEEEECCCCceeEeeccCCC------------------ccccceEECCCCCEE
Confidence 99 899999998532 111125799999887665444321100 012356899999999
Q ss_pred EEEeeeCCee--EEEEEECCCCcEEEecCCCCCceeeEEee-cCCEEEEEEeC------------CCCCCeEEEEEeccc
Q 004141 404 LLSSIWGSSQ--VIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSS------------PVDVPQVKYGYFVDK 468 (771)
Q Consensus 404 ~~~~~~~~~~--~l~~~d~~tg~~~~l~~~~~~~~~~~~s~-dg~~l~~~~~~------------~~~p~~l~~~~~~~~ 468 (771)
++.+...+.. .|+.+|+.+++.+.+..... .. ..|++ ||+.+++..+. ......||+.++.++
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 8887765554 49999999999888765433 23 78999 99976664432 112367888886544
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=190.18 Aligned_cols=226 Identities=18% Similarity=0.187 Sum_probs=151.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+| .+.+++| +. .++.|+||++|||++... ...+...+..|+ +.||.|+++||||.+++. .
T Consensus 64 ~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~-----------~ 126 (311)
T 1jji_A 64 RNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK-----------F 126 (311)
T ss_dssp TTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC-----------T
T ss_pred CCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC-----------C
Confidence 344 7888888 42 456799999999885432 345677788887 689999999999965431 1
Q ss_pred ccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCCc----eeEEEecCCccchhhhh----cCCCC
Q 004141 594 SQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMV----GTTDI 662 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~p~~~~~~~~----~~~~~ 662 (771)
....+|+.++++++.+. ..+++++|+|+|||+||.+++.++.++++. ++++|+.+|+.+..... .....
T Consensus 127 p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~ 206 (311)
T 1jji_A 127 PAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEG 206 (311)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSS
T ss_pred CCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCCCccHHHhcCC
Confidence 23478888999988875 236778999999999999999999877665 99999999987643110 00000
Q ss_pred Cc-c--hhhhhccCCCCccCCCCCChhhHHHHhhcCccc-ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 663 PD-W--CYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS-HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 663 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~-~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. + .....+. ..+.... . .......+|+. .+..+ +|+||++|+.|.++ .++..+++.|++.|++++
T Consensus 207 ~~~~~~~~~~~~~----~~~~~~~--~-~~~~~~~~p~~~~l~~~-~P~li~~G~~D~l~--~~~~~~~~~l~~~g~~~~ 276 (311)
T 1jji_A 207 LWILDQKIMSWFS----EQYFSRE--E-DKFNPLASVIFADLENL-PPALIITAEYDPLR--DEGEVFGQMLRRAGVEAS 276 (311)
T ss_dssp CSSCCHHHHHHHH----HHHCSSG--G-GGGCTTTSGGGSCCTTC-CCEEEEEEEECTTH--HHHHHHHHHHHHTTCCEE
T ss_pred CccCCHHHHHHHH----HHhCCCC--c-cCCCcccCcccccccCC-ChheEEEcCcCcch--HHHHHHHHHHHHcCCCEE
Confidence 00 0 0000000 0000000 0 00011223432 22233 69999999999998 477889999999999999
Q ss_pred EEEeCCCCccCCCC----CChHHHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIERP----QSDFESFLNIGLWFKK 768 (771)
Q Consensus 739 ~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~ 768 (771)
++++++++|.+... ....++++.+.+||++
T Consensus 277 ~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 277 IVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp EEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 99999999987532 2345678888899874
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.4e-20 Score=187.35 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=152.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch---HHHHHHHHCCcEEEEECCC--CCC---------CC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYR--GSL---------GF 580 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~---~~~~~la~~G~~Vv~~d~r--G~~---------~~ 580 (771)
...|.++.+.+|.|++.. .+++|+||++||++.... .|. .....+++.||.|+++|.+ |.+ ++
T Consensus 30 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~--~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G~ 106 (283)
T 4b6g_A 30 QTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTEQ--NFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQ 106 (283)
T ss_dssp TTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCSH--HHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSBT
T ss_pred hhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCcc--chhhcccHHHHHhhCCeEEEEeccccccccccccccccccC
Confidence 345788999999998654 678999999999876532 332 2345667889999999964 432 12
Q ss_pred ChhhhhcCC-CCcc-ccchhhH-H-HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh
Q 004141 581 GEEALQSLP-GKVG-SQDVNDV-L-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656 (771)
Q Consensus 581 g~~~~~~~~-~~~~-~~~~~D~-~-~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~ 656 (771)
|.++..... ..+. .....+. . +.+.++.+.. .+.+|++|+||||||++|+.++.++|++|+++++.+|+++....
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~ 185 (283)
T 4b6g_A 107 SAGFYLNATEQPWAANYQMYDYILNELPRLIEKHF-PTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLV 185 (283)
T ss_dssp TBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHS-CEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGGS
T ss_pred CCcccccCccCcccchhhHHHHHHHHHHHHHHHhC-CCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCccccccC
Confidence 222111111 0110 0111221 2 2334444443 24689999999999999999999999999999999998764321
Q ss_pred hcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC--CCcEEEEeeCCCCccCc-HHHHHHHHHHHhC
Q 004141 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPV-SNGLQYARALREK 733 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~lii~G~~D~~vp~-~~~~~~~~~l~~~ 733 (771)
... ...+...++. ....+...+|...+.++ .+|+|++||+.|.+++. .+++.++++|++.
T Consensus 186 ~~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~~~ 248 (283)
T 4b6g_A 186 PWG----EKAFTAYLGK-------------DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCRAA 248 (283)
T ss_dssp HHH----HHHHHHHHCS-------------CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHHHH
T ss_pred cch----hhhHHhhcCC-------------chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHHHc
Confidence 000 0000011111 11223344555444444 35999999999999986 2388999999999
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|+++++.++|+++|.+. .....+..+++|+.++|+
T Consensus 249 g~~~~~~~~~g~~H~~~---~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 249 NQPVDVRFHKGYDHSYY---FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp TCCCEEEEETTCCSSHH---HHHHHHHHHHHHHHTTCC
T ss_pred CCCceEEEeCCCCcCHh---HHHHHHHHHHHHHHHhcC
Confidence 99999999999999863 223567889999999885
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=183.77 Aligned_cols=231 Identities=13% Similarity=0.056 Sum_probs=149.3
Q ss_pred CCCceEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCCCcchH--HHHHH-HHCCcEEEEECCCCCCCCChhhhhcC
Q 004141 516 GAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSK--SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~----~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~ 588 (771)
..|.++.+++|.|++.+ +.++.|+||++||++.. ...|.. .+..+ .+.||.|+++|+++++..... .
T Consensus 16 ~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~ 89 (263)
T 2uz0_A 16 VLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--HNSWLKRTNVERLLRGTNLIVVMPNTSNGWYTDTQ----Y 89 (263)
T ss_dssp TTTEEEEEEEEECC---------CCBCEEEEECCTTCC--TTHHHHHSCHHHHTTTCCCEEEECCCTTSTTSBCT----T
T ss_pred hhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--HHHHHhccCHHHHHhcCCeEEEEECCCCCccccCC----C
Confidence 35678999999998652 35678999999998765 334544 24444 458999999999875432110 0
Q ss_pred CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC-Ccch-
Q 004141 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PDWC- 666 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~-~~~~- 666 (771)
.........+|+...++.+..+..+++++++|+|||+||++++.++. +|++++++|+.+|..+...+...... ....
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (263)
T 2uz0_A 90 GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFSPESQNLGSPAY 168 (263)
T ss_dssp SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCCGGGTTCSCHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhccccccccccchh
Confidence 00111111344555554443323457899999999999999999999 89999999999998765431100000 0000
Q ss_pred hhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC--CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 667 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
....++. . ....+...+|...+.+++ +|+|++||++|.++ ..++.+++.+++.|.+++++++++
T Consensus 169 ~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v--~~~~~~~~~l~~~g~~~~~~~~~g 234 (263)
T 2uz0_A 169 WRGVFGE---------I---RDWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLY--EANNLAVKNLKKLGFDVTYSHSAG 234 (263)
T ss_dssp HHHHHCC---------C---SCTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTH--HHHHHHHHHHHHTTCEEEEEEESC
T ss_pred HHHHcCC---------h---hhhccccCCHHHHHHhccCCCeEEEEeCCCchhh--HHHHHHHHHHHHCCCCeEEEECCC
Confidence 0000110 0 001223445555555554 79999999999998 457899999999999999999999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+|.+.. ..+.+..+++||.++|+
T Consensus 235 -~H~~~~---~~~~~~~~~~~l~~~l~ 257 (263)
T 2uz0_A 235 -THEWYY---WEKQLEVFLTTLPIDFK 257 (263)
T ss_dssp -CSSHHH---HHHHHHHHHHHSSSCCC
T ss_pred -CcCHHH---HHHHHHHHHHHHHhhcc
Confidence 997531 23667889999987764
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-19 Score=173.89 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=139.6
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEE--CCCCCCCCChhhh-h-cCCCCcc----ccchhhHHHHHHH
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL-Q-SLPGKVG----SQDVNDVLTAIDH 606 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~--d~rG~~~~g~~~~-~-~~~~~~~----~~~~~D~~~~i~~ 606 (771)
++.|+||++||++.. ...|...+..|++ ||.|+++ |++|. |.+.. . .....+. ..++.++.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g~---g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLEN---GMPRFFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEET---TEEESSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccCC---cchhhccccCccCcChhhHHHHHHHHHHHHHH
Confidence 568999999997765 4467778888877 9999999 77773 33210 0 0011111 1124456666666
Q ss_pred HHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChh
Q 004141 607 VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE 686 (771)
Q Consensus 607 l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (771)
+.++..++.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 6777667889999999999999999999999999999999998743110
Q ss_pred hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 687 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 687 ~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
......+++|+|+++|++|..++++.++.+++.+.+.+.++++ ++++++|.+. .+....+.+||
T Consensus 159 ----------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l 222 (226)
T 2h1i_A 159 ----------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTM-HWENRGHQLT-----MGEVEKAKEWY 222 (226)
T ss_dssp ----------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEE-EEESSTTSCC-----HHHHHHHHHHH
T ss_pred ----------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHhcCCeEEE-EeCCCCCCCC-----HHHHHHHHHHH
Confidence 0112234789999999999999999999999999988888888 9999999874 46788999999
Q ss_pred HHhh
Q 004141 767 KKYC 770 (771)
Q Consensus 767 ~~~L 770 (771)
.++|
T Consensus 223 ~~~l 226 (226)
T 2h1i_A 223 DKAF 226 (226)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9875
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-19 Score=179.15 Aligned_cols=206 Identities=11% Similarity=-0.031 Sum_probs=144.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----cchHHHHHHHHC----CcEEEEECCCCCCCCChhhhhc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSV----GYSLLIVNYRGSLGFGEEALQS 587 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----~~~~~~~~la~~----G~~Vv~~d~rG~~~~g~~~~~~ 587 (771)
.|.++.+++|.|+++...+++|+||++||++...... .+...++.|+++ ||.|+++|+++.+.. .
T Consensus 42 ~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~~---~--- 115 (268)
T 1jjf_A 42 TNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPG---I--- 115 (268)
T ss_dssp TTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTT---C---
T ss_pred cCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCcc---c---
Confidence 5678999999999766677899999999977543211 123346777776 599999999984321 0
Q ss_pred CCCCccccchhh-HHHHHHHHHHcCCC--CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCc
Q 004141 588 LPGKVGSQDVND-VLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 588 ~~~~~~~~~~~D-~~~~i~~l~~~~~~--d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~ 664 (771)
...+ ....++ +.++++++.++..+ |++|++|+|+|+||++++.++.++|++|+++++.+|..+....
T Consensus 116 -~~~~-~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~-------- 185 (268)
T 1jjf_A 116 -ADGY-ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN-------- 185 (268)
T ss_dssp -SCHH-HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH--------
T ss_pred -cccH-HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCCCCch--------
Confidence 0001 011233 34556666665444 7899999999999999999999999999999999987542110
Q ss_pred chhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCC-cEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
...+.. .. . ....+. |+|++||+.|.++|. ++.+++.|++.|+++++++++
T Consensus 186 ---~~~~~~---------~~-~-------------~~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~~~g~~~~~~~~~ 237 (268)
T 1jjf_A 186 ---ERLFPD---------GG-K-------------AAREKLKLLFIACGTNDSLIGF--GQRVHEYCVANNINHVYWLIQ 237 (268)
T ss_dssp ---HHHCTT---------TT-H-------------HHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHHTTCCCEEEEET
T ss_pred ---hhhcCc---------ch-h-------------hhhhcCceEEEEecCCCCCccH--HHHHHHHHHHCCCceEEEEcC
Confidence 000000 00 0 001123 599999999999973 778999999999999999999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++|.+. .....+..+++||.++
T Consensus 238 g~~H~~~---~~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 238 GGGHDFN---VWKPGLWNFLQMADEA 260 (268)
T ss_dssp TCCSSHH---HHHHHHHHHHHHHHHH
T ss_pred CCCcCHh---HHHHHHHHHHHHHHhc
Confidence 9999863 1235567888998775
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.6e-19 Score=184.02 Aligned_cols=219 Identities=16% Similarity=0.228 Sum_probs=150.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
+.++++.|.+ ++.|+||++|||++... ...|...+..|+ +.||.|+++||||++++. ....++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~-----------~~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFH-----------IDDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSC-----------HHHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCC-----------chHHHH
Confidence 5567788863 45799999999875432 334556677776 569999999999965431 123478
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCc----eeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
|+.++++++.++ ++.++++|+|||+||.+|+.++.++|+. ++++|+.+|+.+...... .... ..... ..
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~--~~~~-~~~~~-~~- 221 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNK--DISD-ALIEQ-DA- 221 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCT--TCCH-HHHHH-CS-
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCCh--hHHh-hhccc-Cc-
Confidence 999999999887 6788999999999999999999887766 999999999876432100 0000 00000 00
Q ss_pred CCccCCCCCChhhH----HHH--------hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 675 GKDSFTESPSVEDL----TRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 675 ~~~~~~~~~~~~~~----~~~--------~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
....... ..+ ...+|+...-...+|+||++|++|..+ .++..+.+.+++.+.+++++++
T Consensus 222 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~--~~~~~~~~~l~~~~~~~~~~~~ 292 (326)
T 3d7r_A 222 -------VLSQFGVNEIMKKWANGLPLTDKRISPINGTIEGLPPVYMFGGGREMTH--PDMKLFEQMMLQHHQYIEFYDY 292 (326)
T ss_dssp -------SCCHHHHHHHHHHHHTTSCTTSTTTSGGGSCCTTCCCEEEEEETTSTTH--HHHHHHHHHHHHTTCCEEEEEE
T ss_pred -------ccCHHHHHHHHHHhcCCCCCCCCeECcccCCcccCCCEEEEEeCcccch--HHHHHHHHHHHHCCCcEEEEEe
Confidence 0000000 000 112232211112269999999999744 5778899999999999999999
Q ss_pred CCCCccCCC--CCChHHHHHHHHHHHHHhh
Q 004141 743 PNDVHGIER--PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 743 ~~~~H~~~~--~~~~~~~~~~i~~fl~~~L 770 (771)
++++|.+.. .+...++.+.+.+||++++
T Consensus 293 ~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l 322 (326)
T 3d7r_A 293 PKMVHDFPIYPIRQSHKAIKQIAKSIDEDV 322 (326)
T ss_dssp TTCCTTGGGSSSHHHHHHHHHHHHHHTSCC
T ss_pred CCCcccccccCCHHHHHHHHHHHHHHHHHh
Confidence 999998765 2445578889999998776
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-18 Score=206.70 Aligned_cols=328 Identities=11% Similarity=0.013 Sum_probs=210.2
Q ss_pred ceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccc-------eEEEeCCCCCeEE
Q 004141 42 KAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA-------SAVVPSPSGSKLL 114 (771)
Q Consensus 42 ~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~-------~~~~~SPdG~~la 114 (771)
.....+..||||++|+|...... ......||++++. +++.++|+..+ ..+ ..++|||||+ ++
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~---~~~~~~i~~~d~~--~g~~~~lt~~~-----~~~~~~~~~~~~~~~SpDg~-ll 121 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGS---SLNTADLYFYNGE--NGEIKRITYFS-----GKSTGRRMFTDVAGFDPDGN-LI 121 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEEST---TCCEEEEEEEETT--TTEEEECCCCC-----EEEETTEECSEEEEECTTCC-EE
T ss_pred CcccCeEECCCCCEEEEEEeecc---CCCCCeEEEEECC--CCCeEEcccCC-----CcccccccccccccCCCCCE-EE
Confidence 34557778999999999875421 1234688888763 44566776543 334 7899999998 77
Q ss_pred EEecCCC---CCCeEEEEe-cCCcceEEEecC------------------------------------------------
Q 004141 115 VVRNPEN---ESPIQFELW-SQSQLEKEFHVP------------------------------------------------ 142 (771)
Q Consensus 115 ~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~------------------------------------------------ 142 (771)
|++.... ...++|.++ .++...+++...
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 8776431 234577666 343322211100
Q ss_pred --------------------Cccccccc-------------CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004141 143 --------------------QTVHGSVY-------------ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 143 --------------------~~~~g~~~-------------~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.+....+| ....+..++|||||++|+|..... -..|... ....
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~---i~~~d~~-~~~l 277 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS---IYIFNPD-TEKI 277 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE---EEEECTT-TCCE
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE---EEEecCC-ceEe
Confidence 00000010 011233567888888888864211 0011110 0000
Q ss_pred CCCc-----------cCCCCCCccccc-CCcCcccCCccCceEEEEEccCCceeeccCCCCCC-ccceEEEecCCCCCcc
Q 004141 190 SSDK-----------DCNSWKGQGDWE-EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 190 ~~~~-----------~~~~~~~~~~~~-~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-~~~~~~wspDg~~~~~ 256 (771)
.... .+......+.|+ +|.... +......|+++++.+++.+.+ ..... .+..++|| ||+.
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~l-a~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~s-dg~~--- 350 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLI-AFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVA--- 350 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCE-EEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSS-SEEE---
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEE-EEEEcCEEEEEcCCCCceEEc--cCCCcceEEeeeEc-CCCe---
Confidence 0000 011123456688 885433 333477999999999988887 44444 67889999 9998
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeE-EEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALY-AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+|.+. ..+|| ++++ .+++.+.++.+...+..+.|||||++|++.+
T Consensus 351 -l~~~s~---------------~~~l~~~~d~-----------------~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 351 -FIHGTR---------------EGDFLGIYDY-----------------RTGKAEKFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp -EEEEET---------------TEEEEEEEET-----------------TTCCEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred -EEEEEC---------------CCceEEEEEC-----------------CCCCceEecCCccceeeeEECCCCCEEEEEC
Confidence 998872 23799 9998 7778888885556788999999999999887
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-----
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----- 410 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~----- 410 (771)
.+. .|+++|+.+++.+.+.... ...+..++|||||++|++.....
T Consensus 398 ~~~-----------~v~~~d~~tg~~~~~~~~~-------------------~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 398 DRF-----------EIMTVDLETGKPTVIERSR-------------------EAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp TTS-----------EEEEEETTTCCEEEEEECS-------------------SSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCC-----------eEEEEECCCCceEEeccCC-------------------CCCccceEECCCCCeEEEEecCcccccc
Confidence 652 5999999887654332111 01245789999999998877643
Q ss_pred --CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCC
Q 004141 411 --SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 411 --~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~ 454 (771)
....|+.+|++++++..++........+.|++||+.|++.....
T Consensus 448 ~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 34679999999999888887655555678999999999877543
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=165.28 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=128.2
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+++|+||++||.+.......+......|+++||.|+++|+|| +|.+.... ......+++..+++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g---~g~s~~~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTD---LDARRDLG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHH---HHTCGGGC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 457899999997765332234467888999999999999998 44332111 11112344455566666553 3
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (771)
.++++++|||+||.+++.++.++| ++++|+.+|......+ +
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~--------------------------~----------- 113 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL--------------------------P----------- 113 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB--------------------------C-----------
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc--------------------------C-----------
Confidence 578999999999999999999988 9999998887542100 0
Q ss_pred CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 695 sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.+..+++|+|+++|++|..+|++.++++++.+ +++++++ +++|.+. +...++.+.+.+||++
T Consensus 114 ----~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-----~~~~~~~-~~~H~~~--~~~~~~~~~i~~fl~~ 175 (176)
T 2qjw_A 114 ----ALDAAAVPISIVHAWHDELIPAADVIAWAQAR-----SARLLLV-DDGHRLG--AHVQAASRAFAELLQS 175 (176)
T ss_dssp ----CCCCCSSCEEEEEETTCSSSCHHHHHHHHHHH-----TCEEEEE-SSCTTCT--TCHHHHHHHHHHHHHT
T ss_pred ----cccccCCCEEEEEcCCCCccCHHHHHHHHHhC-----CceEEEe-CCCcccc--ccHHHHHHHHHHHHHh
Confidence 04567899999999999999999999998887 3678888 8999873 5566788888888864
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=183.71 Aligned_cols=216 Identities=17% Similarity=0.186 Sum_probs=146.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCCC---------C--Ch
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLG---------F--GE 582 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~~---------~--g~ 582 (771)
..+|.++.+++|.|.+. ..+.|+||++||++... ..| ......++++||.|+++|+|+... + |.
T Consensus 34 ~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~--~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~~~g~~~g~ 109 (304)
T 3d0k_A 34 RNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRNG--ADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTA 109 (304)
T ss_dssp -CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCCH--HHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHTTTTTCBCT
T ss_pred CCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCCH--HHHHHHHHHHHHHCCcEEEEeCCccccCCCccccccCccccc
Confidence 56788999999999742 34679999999987653 234 445677888999999999996411 1 11
Q ss_pred hhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEEecC-CccchhhhhcCC
Q 004141 583 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARN-PLCNLALMVGTT 660 (771)
Q Consensus 583 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~-p~~~~~~~~~~~ 660 (771)
+. .........++|+.++++++.++..++.++|+|+|||+||++++.++.++|+ .++++|+.+ |..++...
T Consensus 110 s~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~~~~---- 182 (304)
T 3d0k_A 110 AG---NPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTF---- 182 (304)
T ss_dssp TS---CBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCCSST----
T ss_pred cC---CCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccccCCc----
Confidence 10 0101112345789999999998766889999999999999999999999985 788888655 54432211
Q ss_pred CCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccC-----------------cHHH
Q 004141 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP-----------------VSNG 723 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp-----------------~~~~ 723 (771)
...|. ++. ... ..+|......+++|+|++||+.|..+. .+.+
T Consensus 183 -~~~~~----~~~------~~~----------~~~~~~~~~~~~~p~li~~G~~D~~~~~p~~~~~~~~~~~~~~~~~~~ 241 (304)
T 3d0k_A 183 -EHRFP----EGL------DGV----------GLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARA 241 (304)
T ss_dssp -TSBTT----TSS------BTT----------TCCHHHHHHHHHSCCEEEEETTCCCC--CCSCCSHHHHTTCSSHHHHH
T ss_pred -cccCc----ccc------CCC----------CCCHHHHHhhhcCCEEEEEeCCCCCccccccccChhhhccCccHHHHH
Confidence 00000 000 000 012323233456899999999999752 3456
Q ss_pred HHHHHHHH----hCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 724 LQYARALR----EKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 724 ~~~~~~l~----~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
..+++.++ ..|++ ++++++|+++|.+. .....+.+||..
T Consensus 242 ~~~~~~l~~~a~~~g~~~~~~~~~~pg~gH~~~------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 242 RHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQ------AMSQVCASLWFD 286 (304)
T ss_dssp HHHHHHHHHHHHHHTCCCCCEEEEETTCCSCHH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCcceEEEEeCCCCCchH------HHHHHHHHHHhh
Confidence 67777776 66776 99999999999863 456677777754
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-18 Score=170.71 Aligned_cols=195 Identities=17% Similarity=0.146 Sum_probs=137.6
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-----CcEEEEECCCCCC------CCChhhhhc----CCCCccccch
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-----GYSLLIVNYRGSL------GFGEEALQS----LPGKVGSQDV 597 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-----G~~Vv~~d~rG~~------~~g~~~~~~----~~~~~~~~~~ 597 (771)
..++.|+||++||.+.+ ...|...+..|+.+ ||.|++++.++.. +.+..|... .........+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 96 (239)
T 3u0v_A 19 AGRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESI 96 (239)
T ss_dssp SSCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHH
T ss_pred CCCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhH
Confidence 34578999999997654 33566677777765 6999999986421 111111110 0001111234
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+++.+.+..+++. ..++.++++|+||||||++++.++.++|+.++++|+.+|.......
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------ 158 (239)
T 3u0v_A 97 DVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------ 158 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH------------------
Confidence 4444444444432 3468899999999999999999999999999999999987532110
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCc-EEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
..... ......+| +|++||++|..+|+++++.+++.+++.+.+++++++++++|.+.
T Consensus 159 ------------~~~~~-------~~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~--- 216 (239)
T 3u0v_A 159 ------------VYQAL-------QKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELS--- 216 (239)
T ss_dssp ------------HHHHH-------HHCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHHHTTCCEEEEEETTCCSSCC---
T ss_pred ------------HHHHH-------HhhccCCCCEEEEeeCCCCccCHHHHHHHHHHHHHcCCcEEEEEeCCCCCcCC---
Confidence 00000 01233456 99999999999999999999999999999999999999999886
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
.+....+.+||+++|.
T Consensus 217 --~~~~~~~~~~l~~~l~ 232 (239)
T 3u0v_A 217 --KTELDILKLWILTKLP 232 (239)
T ss_dssp --HHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHhCC
Confidence 4678899999998873
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-19 Score=190.16 Aligned_cols=249 Identities=19% Similarity=0.212 Sum_probs=154.2
Q ss_pred ccccCCCceEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHH----HCCc---EEEEECCCCCCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS----SVGY---SLLIVNYRGSLGFG 581 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~---~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la----~~G~---~Vv~~d~rG~~~~g 581 (771)
++...+|..+++..+.|.+ ..+.++.|+||++||.+.. ...|...+..|+ ..|| .|+++|+|| +|
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~G 98 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---HG 98 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---SH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---CC
Confidence 4557789999999998864 1123456899999997765 345667777787 4589 999999999 67
Q ss_pred hhhhhcCCCCccccc----hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh
Q 004141 582 EEALQSLPGKVGSQD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657 (771)
Q Consensus 582 ~~~~~~~~~~~~~~~----~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~ 657 (771)
.+............. ++|+.+.++.+.....+++.+++|+||||||.+++.++.++|++++++|+.+|........
T Consensus 99 ~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~ 178 (398)
T 2y6u_A 99 DSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKAI 178 (398)
T ss_dssp HHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCCC
T ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccccccc
Confidence 665422110011122 3344444443321111344569999999999999999999999999999999876531100
Q ss_pred c--CCCCCc----c--hhhhhccCCC-------------C--ccCCCCCChhhHHHHhh---------------------
Q 004141 658 G--TTDIPD----W--CYVESYGSKG-------------K--DSFTESPSVEDLTRFHS--------------------- 693 (771)
Q Consensus 658 ~--~~~~~~----~--~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~~--------------------- 693 (771)
. ....+. + .+...+.... . ..+...........+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 2y6u_A 179 GAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKME 258 (398)
T ss_dssp SCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESSC
T ss_pred ccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecCC
Confidence 0 000000 0 0000000000 0 00000001111111100
Q ss_pred ---------------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHH
Q 004141 694 ---------------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 758 (771)
Q Consensus 694 ---------------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 758 (771)
......+.++++|+|+++|++|.++|++.++.+++.+. .+++++++++||.+... ...++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~~~~~~~~~l~~~~~----~~~~~~~~~~gH~~~~e-~p~~~ 333 (398)
T 2y6u_A 259 QAQNLLCYMNMQTFAPFLISNVKFVRKRTIHIVGARSNWCPPQNQLFLQKTLQ----NYHLDVIPGGSHLVNVE-APDLV 333 (398)
T ss_dssp HHHHHHTTSCGGGTHHHHHHHGGGCCSEEEEEEETTCCSSCHHHHHHHHHHCS----SEEEEEETTCCTTHHHH-SHHHH
T ss_pred chhhhhhhcccccchHHHHHhccccCCCEEEEEcCCCCCCCHHHHHHHHHhCC----CceEEEeCCCCccchhc-CHHHH
Confidence 01123567889999999999999999998888777664 47999999999976543 45578
Q ss_pred HHHHHHHHHHhh
Q 004141 759 FLNIGLWFKKYC 770 (771)
Q Consensus 759 ~~~i~~fl~~~L 770 (771)
.+.+.+||++++
T Consensus 334 ~~~i~~fl~~~~ 345 (398)
T 2y6u_A 334 IERINHHIHEFV 345 (398)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999998875
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=189.68 Aligned_cols=251 Identities=15% Similarity=0.159 Sum_probs=152.8
Q ss_pred cccCCCceEEEEEEecCCCC--CCCCCcEEEEEcCCCCCCCCC----cchHHHHHHHHCCcEEEEECCCCCCCCChhhhh
Q 004141 513 LTKGAQKPFEAIFVSSSHKK--DCSCDPLIVVLHGGPHSVSLS----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~--~~~~~p~vv~~HGg~~~~~~~----~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~ 586 (771)
+...+|..+.++.+.|.... ..++.|+||++||.+.+.... .+...+..|+++||.|+++|+||.+........
T Consensus 32 ~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~G~S~~~~~~ 111 (377)
T 1k8q_A 32 VVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLYY 111 (377)
T ss_dssp EECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEESSS
T ss_pred eEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCCCCCCCCCCC
Confidence 34567889998888765211 113679999999976653211 122345588999999999999994433221000
Q ss_pred -cCCC---Cccccc-hh-hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC---ceeEEEecCCccchhhhh
Q 004141 587 -SLPG---KVGSQD-VN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMV 657 (771)
Q Consensus 587 -~~~~---~~~~~~-~~-D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~---~~~~~v~~~p~~~~~~~~ 657 (771)
.... .+...+ .+ |+.++++++.+. .+.++++|+||||||.+++.++.++|+ +++++|+.+|........
T Consensus 112 ~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~~~~~~~~~ 189 (377)
T 1k8q_A 112 SPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYTE 189 (377)
T ss_dssp CTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSSCC
T ss_pred CCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCCchhcccch
Confidence 0000 111111 34 777888888776 245789999999999999999999998 899999999875422100
Q ss_pred ------------------cCCC-CCcchhhh----hc------------------cC-------CCCcc-CCCCCCh---
Q 004141 658 ------------------GTTD-IPDWCYVE----SY------------------GS-------KGKDS-FTESPSV--- 685 (771)
Q Consensus 658 ------------------~~~~-~~~~~~~~----~~------------------~~-------~~~~~-~~~~~~~--- 685 (771)
+... .+...... .+ +. ..... +...+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (377)
T 1k8q_A 190 TLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTSV 269 (377)
T ss_dssp SGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCEEH
T ss_pred hHHHHHHhhccHHHHhhcCccccCcHHHHHHHHHHHhhCCccHHHHHHHHHHHhcCCCcccCCHHHHHHHhccCCCCccH
Confidence 0000 00000000 00 00 00000 0000000
Q ss_pred h------------------------hHHHHhhcC-cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE-E
Q 004141 686 E------------------------DLTRFHSKS-PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK-V 739 (771)
Q Consensus 686 ~------------------------~~~~~~~~s-p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~-~ 739 (771)
. ....+.... +...+.++++|+|+++|++|.++|++.++.+++.+.. .+ +
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~ 345 (377)
T 1k8q_A 270 QNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN----LIYH 345 (377)
T ss_dssp HHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT----EEEE
T ss_pred HHHHHHHHHHhcCCeeeccCCcchhhHHHcCCCCCcccCHhhCCCCEEEEEeCCCcccCHHHHHHHHHhCcC----cccE
Confidence 0 111111111 2334778899999999999999999998888777654 44 8
Q ss_pred EEeCCCCccCCC--CCChHHHHHHHHHHHHHh
Q 004141 740 IVFPNDVHGIER--PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~--~~~~~~~~~~i~~fl~~~ 769 (771)
++++++||.... .+...+++..|.+||+++
T Consensus 346 ~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 377 (377)
T 1k8q_A 346 RKIPPYNHLDFIWAMDAPQAVYNEIVSMMGTD 377 (377)
T ss_dssp EEETTCCTTHHHHCTTHHHHTHHHHHHHHHTC
T ss_pred EecCCCCceEEEecCCcHHHHHHHHHHHhccC
Confidence 899999998653 455667889999999864
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-19 Score=176.73 Aligned_cols=185 Identities=17% Similarity=0.116 Sum_probs=135.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEE--CCCCCCCCChhhh-hcCCCC--ccccchhhHHHHHHHHHH
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL-QSLPGK--VGSQDVNDVLTAIDHVID 609 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~--d~rG~~~~g~~~~-~~~~~~--~~~~~~~D~~~~i~~l~~ 609 (771)
++.|+||++||++.. ...|...+..|++ +|.|+++ |++|.++++.... ...... ......+|+.++++++.+
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANRE 136 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEESSCBCGGGCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcccccCCCCCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 567999999997754 3356667777765 5999999 6777443211000 000000 011225677777777766
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHH
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
+. +.++++|+|||+||++++.++.++|++++++|+.+|......
T Consensus 137 ~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~---------------------------------- 180 (251)
T 2r8b_A 137 HY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP---------------------------------- 180 (251)
T ss_dssp HH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC----------------------------------
T ss_pred cc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc----------------------------------
Confidence 53 678999999999999999999999999999999998753210
Q ss_pred HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 690 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
......+++|+|+++|++|..+|++.++++++.+++.+.++++ .+++++|.+. .+..+.+.+||+++
T Consensus 181 -------~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~gH~~~-----~~~~~~~~~~l~~~ 247 (251)
T 2r8b_A 181 -------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVET-VWHPGGHEIR-----SGEIDAVRGFLAAY 247 (251)
T ss_dssp -------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEE-EEESSCSSCC-----HHHHHHHHHHHGGG
T ss_pred -------cccccccCCcEEEeccCCCccCCHHHHHHHHHHHHHcCCeEEE-EecCCCCccC-----HHHHHHHHHHHHHh
Confidence 0112345789999999999999999999999999987777776 6667899874 45678999999988
Q ss_pred hC
Q 004141 770 CK 771 (771)
Q Consensus 770 L~ 771 (771)
|+
T Consensus 248 l~ 249 (251)
T 2r8b_A 248 GG 249 (251)
T ss_dssp C-
T ss_pred cC
Confidence 74
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=179.06 Aligned_cols=221 Identities=11% Similarity=0.114 Sum_probs=136.9
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.+++++.+.|.+. ..+..|+||++||.+.+ ...|...+..|+++||.|+++|+||.. |.+... ...+.
T Consensus 13 ~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~--~~~~~~~~~~L~~~G~~Vi~~D~rGh~--G~S~~~--~~~~~ 85 (305)
T 1tht_A 13 RVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEFT 85 (305)
T ss_dssp EETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CCC
T ss_pred EcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccC--chHHHHHHHHHHHCCCEEEEeeCCCCC--CCCCCc--cccee
Confidence 344688899988877531 12356899999997654 346888999999999999999999941 443211 11121
Q ss_pred c-cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchh--hhh
Q 004141 594 S-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VES 670 (771)
Q Consensus 594 ~-~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~--~~~ 670 (771)
. ...+|+.++++++.+. +.++++|+||||||.+++.++.+ | +++++|+.++..+............+.. ...
T Consensus 86 ~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (305)
T 1tht_A 86 MTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDYLSLPIDE 160 (305)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCGGGSCGGG
T ss_pred hHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhhhhcchhh
Confidence 1 2256788888888643 34789999999999999999988 6 7899998887654321100000000000 000
Q ss_pred ccCCCCccCCCCC-ChhhH-HHHhhc------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 671 YGSKGKDSFTESP-SVEDL-TRFHSK------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 671 ~~~~~~~~~~~~~-~~~~~-~~~~~~------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
... ... +.... ..... ...... +....+.++++|+|+++|++|..+|++.++.+++.+.. .+++++++
T Consensus 161 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~~--~~~~l~~i 236 (305)
T 1tht_A 161 LPN-DLD-FEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSL 236 (305)
T ss_dssp CCS-EEE-ETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEEEE
T ss_pred Ccc-ccc-ccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcCC--CCcEEEEe
Confidence 000 000 00000 00000 011111 12345778999999999999999999988887765532 24899999
Q ss_pred CCCCccCC
Q 004141 743 PNDVHGIE 750 (771)
Q Consensus 743 ~~~~H~~~ 750 (771)
+++||.+.
T Consensus 237 ~~agH~~~ 244 (305)
T 1tht_A 237 LGSSHDLG 244 (305)
T ss_dssp TTCCSCTT
T ss_pred CCCCCchh
Confidence 99999875
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-18 Score=171.24 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=143.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cc-hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~-~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+|.++ .+|.|.+ ++.|+||++|||++..... .+ ......+++.||.|+++|||+.+++ ...
T Consensus 13 ~~~~~--~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~-----------~~p 75 (274)
T 2qru_A 13 NGATV--TIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT-----------KID 75 (274)
T ss_dssp TSCEE--EEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS-----------CHH
T ss_pred CCeeE--EEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC-----------CCc
Confidence 35555 5777752 5679999999998765433 33 3456678888999999999986543 122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh---hCCCceeEEEecCCccchhhhhcCC--CCCc--chh
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTT--DIPD--WCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~p~~~~~~~~~~~--~~~~--~~~ 667 (771)
..++|+.++++|+.++.. ++++|+|+|+|+||.+|+.++. ..+..++++++.+|..+........ ..+. ...
T Consensus 76 ~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (274)
T 2qru_A 76 HILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQAISAKE 154 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSCCCSGG
T ss_pred HHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhccccccHHH
Confidence 348999999999998742 2789999999999999999987 3567888999888877622110000 0000 000
Q ss_pred hhhc-cCCC-CccCCCCCChh---------hHHHHhhc--------Ccc--cccCCCCCcEEEEeeCCCCccCcHHHHHH
Q 004141 668 VESY-GSKG-KDSFTESPSVE---------DLTRFHSK--------SPI--SHISKVKTPTIFLLGAQDLRVPVSNGLQY 726 (771)
Q Consensus 668 ~~~~-~~~~-~~~~~~~~~~~---------~~~~~~~~--------sp~--~~~~~i~~P~lii~G~~D~~vp~~~~~~~ 726 (771)
...+ .... ...... .... ....+... .+. ..+.++ +|+||++|+.|+.++..+++++
T Consensus 155 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-pP~li~~G~~D~~~~~~~~~~l 232 (274)
T 2qru_A 155 IAAIDQTKPVWDDPFL-SRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDETLKTF-PPCFSTASSSDEEVPFRYSKKI 232 (274)
T ss_dssp GTTSCCSSCCSCCTTC-TTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHHHHHTS-CCEEEEEETTCSSSCTHHHHHH
T ss_pred HhhhcccCCCCCCccc-cchhhhhhhhhhcchhhccCcccccccccCCCChhhhcCC-CCEEEEEecCCCCcCHHHHHHH
Confidence 0000 0000 000000 0000 00000000 001 123455 8999999999999988877776
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCC---ChHHHHHHHHHHHHHh
Q 004141 727 ARALREKGVETKVIVFPNDVHGIERPQ---SDFESFLNIGLWFKKY 769 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~---~~~~~~~~i~~fl~~~ 769 (771)
.+++ ++++++++++++|++.... ...++++.+.+||+++
T Consensus 233 ~~~~----~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~~ 274 (274)
T 2qru_A 233 GRTI----PESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKER 274 (274)
T ss_dssp HHHS----TTCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHTC
T ss_pred HHhC----CCcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhhC
Confidence 6655 4579999999999975321 1235678889998753
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-19 Score=173.99 Aligned_cols=192 Identities=15% Similarity=0.214 Sum_probs=138.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
..+|.+++++.+.|. ..++.|+||++||++.. ...|.. .+..|+++||.|+++|+|| +|.+.........
T Consensus 13 ~~~g~~l~~~~~~p~---~~~~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~ 84 (210)
T 1imj_A 13 QVQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPI 84 (210)
T ss_dssp EETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCT
T ss_pred eeCCeEEEEEEeCCC---CCCCCceEEEECCCCCc--cceeecchhHHHHHHCCCeEEEecCCC---CCCCCCCCCcchh
Confidence 346889999999886 34567999999997655 234555 4788999999999999999 5554332211111
Q ss_pred cccch--hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 593 GSQDV--NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 593 ~~~~~--~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.... +++...++.+ +.++++++|||+||.+++.++.++|++++++|+.+|.....
T Consensus 85 -~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~---------------- 141 (210)
T 1imj_A 85 -GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK---------------- 141 (210)
T ss_dssp -TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------------
T ss_pred -hhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc----------------
Confidence 1112 4555544443 34689999999999999999999999999999998874310
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
.....+.++++|+|+++|++|. ++.+..+.+ +.+ .+.++.++++++|.+.
T Consensus 142 ------------------------~~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~----~~~~~~~~~~~~H~~~ 191 (210)
T 1imj_A 142 ------------------------INAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQL----PNHRVLIMKGAGHPCY 191 (210)
T ss_dssp ------------------------SCHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTS----SSEEEEEETTCCTTHH
T ss_pred ------------------------ccchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhC----CCCCEEEecCCCcchh
Confidence 0112235678999999999999 988776665 443 3589999999999854
Q ss_pred CCCChHHHHHHHHHHHHH
Q 004141 751 RPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 751 ~~~~~~~~~~~i~~fl~~ 768 (771)
.. ....+.+.+.+||++
T Consensus 192 ~~-~~~~~~~~i~~fl~~ 208 (210)
T 1imj_A 192 LD-KPEEWHTGLLDFLQG 208 (210)
T ss_dssp HH-CHHHHHHHHHHHHHT
T ss_pred hc-CHHHHHHHHHHHHHh
Confidence 32 344677888888875
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=174.57 Aligned_cols=184 Identities=15% Similarity=0.060 Sum_probs=136.8
Q ss_pred EEEEecCCCCC-CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004141 523 AIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 523 ~~~~~P~~~~~-~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
+.+|.|..... +++.|+||++||++.. ...|...+..|+++||.|+++|+|++. ...|+.
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~~ 94 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGREML 94 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHHH
Confidence 67888874211 2378999999997764 456778889999999999999999631 134555
Q ss_pred HHHHHHHHc---------CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 602 TAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 602 ~~i~~l~~~---------~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
.+++++.+. ..++.++++|+||||||.+++.++ .+++++++++.+|....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~------------------- 153 (258)
T 2fx5_A 95 ACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG------------------- 153 (258)
T ss_dssp HHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------------
T ss_pred HHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------------
Confidence 566665542 235678999999999999999887 35689999987764310
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.+ .....+.++++|+|+++|++|..+|++. ...+++. .+.+++++++++++|.+..
T Consensus 154 ---------~~-----------~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~H~~~~ 210 (258)
T 2fx5_A 154 ---------LG-----------HDSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRR---ANVPVFWGERRYVSHFEPV 210 (258)
T ss_dssp ---------TT-----------CCGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHH---CSSCEEEEEESSCCTTSST
T ss_pred ---------cc-----------cchhhhccCCCCEEEEEcCCCcccCchhhHHHHHhc---cCCCeEEEEECCCCCcccc
Confidence 00 0012456788999999999999999886 7777665 3467999999999998775
Q ss_pred CCChHHHHHHHHHHHHHhh
Q 004141 752 PQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl~~~L 770 (771)
... ..+...+.+||+++|
T Consensus 211 ~~~-~~~~~~i~~fl~~~l 228 (258)
T 2fx5_A 211 GSG-GAYRGPSTAWFRFQL 228 (258)
T ss_dssp TTC-GGGHHHHHHHHHHHH
T ss_pred chH-HHHHHHHHHHHHHHh
Confidence 443 377889999999776
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=179.28 Aligned_cols=254 Identities=14% Similarity=0.051 Sum_probs=153.4
Q ss_pred cccccCCC--ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCc-----chHHHHHHH-HCCcEEEEECCCCCCCCC
Q 004141 511 ANLTKGAQ--KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSS-----YSKSLAFLS-SVGYSLLIVNYRGSLGFG 581 (771)
Q Consensus 511 ~~~~~~~g--~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~-----~~~~~~~la-~~G~~Vv~~d~rG~~~~g 581 (771)
+.+.+.+| ..+.++++.|.+. .++.|+|++.||...... ... ....+..|+ ++||+|+++||||.++++
T Consensus 48 Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~ 125 (377)
T 4ezi_A 48 YKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNE 125 (377)
T ss_dssp EEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCC
T ss_pred EEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCC
Confidence 34445445 5588999999853 467899999999764211 111 123455677 999999999999966554
Q ss_pred hhhhhcCCCCccccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhh
Q 004141 582 EEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLAL 655 (771)
Q Consensus 582 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~ 655 (771)
..............++.|...++..+.+. +..+.++|+++|||+||++++.++..+|+ .+++++..++..++..
T Consensus 126 ~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~~p~dl~~ 205 (377)
T 4ezi_A 126 LTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYGWEE 205 (377)
T ss_dssp CSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEESCCCCHHH
T ss_pred CCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecCcccCHHH
Confidence 31100000000112233444444444443 32356899999999999999999886543 5889999998887653
Q ss_pred hhcCCC---C-C--cc----------------hhhhhccCCCC-------c----------cCC----CCCChhhHHHHh
Q 004141 656 MVGTTD---I-P--DW----------------CYVESYGSKGK-------D----------SFT----ESPSVEDLTRFH 692 (771)
Q Consensus 656 ~~~~~~---~-~--~~----------------~~~~~~~~~~~-------~----------~~~----~~~~~~~~~~~~ 692 (771)
.....+ . . .+ .....+..... . .+. ............
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (377)
T 4ezi_A 206 TMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIFQPKFSNGII 285 (377)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGBCHHHHHHHH
T ss_pred HHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHhchhhhhhcc
Confidence 221100 0 0 00 00000000000 0 000 000000000000
Q ss_pred -hcCc-cc--------ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--CCccCCCCCChHHHHH
Q 004141 693 -SKSP-IS--------HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN--DVHGIERPQSDFESFL 760 (771)
Q Consensus 693 -~~sp-~~--------~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~~H~~~~~~~~~~~~~ 760 (771)
...| +. .-..+++|+|++||++|.+||+++++++++++++.|. ++++.+++ .+|... ....+.
T Consensus 286 ~~~~p~~~~~l~~~~~~~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~G~-v~~~~~~~~~~~H~~~----~~~~~~ 360 (377)
T 4ezi_A 286 SKTDRNTEILKINFNHYDFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKYSD-FVWIKSVSDALDHVQA----HPFVLK 360 (377)
T ss_dssp TTCSTTHHHHHHHHCCCCSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTTCS-CEEEEESCSSCCTTTT----HHHHHH
T ss_pred cccchHHHHHHHHhcccCCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhcCC-EEEEEcCCCCCCccCh----HHHHHH
Confidence 0122 10 1125679999999999999999999999999999999 99999999 889754 346788
Q ss_pred HHHHHHHHhhC
Q 004141 761 NIGLWFKKYCK 771 (771)
Q Consensus 761 ~i~~fl~~~L~ 771 (771)
.+++||+++++
T Consensus 361 ~~~~wl~~~~~ 371 (377)
T 4ezi_A 361 EQVDFFKQFER 371 (377)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 99999998864
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=178.87 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=143.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-------HHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-----
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL----- 588 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-------~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~----- 588 (771)
+...++.|.+ .+.|+||++||++... ..|. ..+..|+++||.|+++|+||.+..+.......
T Consensus 50 ~~~~~~~p~~----~~~~~vvl~HG~g~~~--~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~~ 123 (328)
T 1qlw_A 50 MYVRYQIPQR----AKRYPITLIHGCCLTG--MTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLG 123 (328)
T ss_dssp EEEEEEEETT----CCSSCEEEECCTTCCG--GGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTT
T ss_pred EEEEEEccCC----CCCccEEEEeCCCCCC--CccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccccccc
Confidence 5555667752 2346799999987543 3454 37888999999999999999544332211000
Q ss_pred -----------------------CC-Ccc---------ccchhh------------------HHHHHHHHHHcCCCCCCe
Q 004141 589 -----------------------PG-KVG---------SQDVND------------------VLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 589 -----------------------~~-~~~---------~~~~~D------------------~~~~i~~l~~~~~~d~~r 617 (771)
.+ .+. ...+++ +.+++..++++. ++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~ 199 (328)
T 1qlw_A 124 KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----DG 199 (328)
T ss_dssp SSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----TS
T ss_pred ccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----CC
Confidence 00 000 000122 556666666552 37
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
++|+|||+||.+++.++.++|++++++|+.+|... ..+.
T Consensus 200 ~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-----------------------------------------~~~~ 238 (328)
T 1qlw_A 200 TVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-----------------------------------------PKPE 238 (328)
T ss_dssp EEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-----------------------------------------CCGG
T ss_pred ceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-----------------------------------------CCHH
Confidence 99999999999999999999999999999887530 0011
Q ss_pred cccCCCCCcEEEEeeCCCCccCc-----HHHHHHHHHHHhCCCCEEEEEeCCCC-----ccCCCCCChHHHHHHHHHHHH
Q 004141 698 SHISKVKTPTIFLLGAQDLRVPV-----SNGLQYARALREKGVETKVIVFPNDV-----HGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 698 ~~~~~i~~P~lii~G~~D~~vp~-----~~~~~~~~~l~~~g~~~~~~~~~~~~-----H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.....+++|+|+++|++|..+|+ +.++.+++.++..|.++++++++++| |.+....+..++.+.+.+||+
T Consensus 239 ~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~gi~G~~H~~~~~~~~~~~~~~i~~fl~ 318 (328)
T 1qlw_A 239 DVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIG 318 (328)
T ss_dssp GCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHH
T ss_pred HHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHhCCCceEEEcCCCCcCCCcccchhccCHHHHHHHHHHHHH
Confidence 11223568999999999999997 99999999999988899999999665 988766656789999999999
Q ss_pred Hhh
Q 004141 768 KYC 770 (771)
Q Consensus 768 ~~L 770 (771)
+++
T Consensus 319 ~~~ 321 (328)
T 1qlw_A 319 RNT 321 (328)
T ss_dssp HTC
T ss_pred hcc
Confidence 875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=196.93 Aligned_cols=233 Identities=16% Similarity=0.105 Sum_probs=161.2
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+...++||||++|||++..+ +..++|.+ ++++.++++... ..+ ..+.|||| +|+|.+....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~-g~~~lw~~-~~g~~~~lt~~~~~~~----------~~~~~spd--~~l~~~~~~~--- 85 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE-GSVNAYLY-DGGETVKLNREPINSV----------LDPHYGVG--RVILVRDVSK--- 85 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET-TEEEEEEE-ETTEEEECCSSCCSEE----------CEECTTCS--EEEEEEECST---
T ss_pred chheeecCCCCCeEEEEEccC-CceeEEEE-cCCCcEeeeccccccc----------ccccCCCC--eEEEEeccCC---
Confidence 377889999999999998754 55566765 566666666543 122 58999999 6888765311
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc--cCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+.....||.+++ +++.. .+ +... .....+|||||+.
T Consensus 86 -----------------------------------g~~~~~l~~~~~~~~g~~~-~l--~~~~-~~~~~~~s~dg~~--- 123 (582)
T 3o4h_A 86 -----------------------------------GAEQHALFKVNTSRPGEEQ-RL--EAVK-PMRILSGVDTGEA--- 123 (582)
T ss_dssp -----------------------------------TSCCEEEEEEETTSTTCCE-EC--TTSC-SBEEEEEEECSSC---
T ss_pred -----------------------------------CCcceEEEEEeccCCCccc-cc--cCCC-CceeeeeCCCCCe---
Confidence 012357999998 66555 55 2222 2346799999999
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++|++...+ .++++|+ ++++.++++.... .+++|||||++|+|.+.
T Consensus 124 -~~~~s~~~~--------------~~~l~d~-----------------~~g~~~~l~~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 124 -VVFTGATED--------------RVALYAL-----------------DGGGLRELARLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp -EEEEEECSS--------------CEEEEEE-----------------ETTEEEEEEEESS--CEEEEEEETTEEEEEEE
T ss_pred -EEEEecCCC--------------CceEEEc-----------------cCCcEEEeecCCC--ceEEECCCCCEEEEEEE
Confidence 999873222 3446687 7778888876544 78999999999999987
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+. .....||++|+.+++.++++.... ....++|||||+.|+ .+..++...||
T Consensus 170 ~~-------~~~~~i~~~d~~~g~~~~l~~~~~--------------------~~~~~~~SpDG~~l~-~~~~~~~~~i~ 221 (582)
T 3o4h_A 170 FG-------GGRVSLFTSNLSSGGLRVFDSGEG--------------------SFSSASISPGMKVTA-GLETAREARLV 221 (582)
T ss_dssp EE-------TTEEEEEEEETTTCCCEEECCSSC--------------------EEEEEEECTTSCEEE-EEECSSCEEEE
T ss_pred cC-------CCCeEEEEEcCCCCCceEeecCCC--------------------ccccceECCCCCEEE-EccCCCeeEEE
Confidence 74 123569999999888765543321 124678999999887 55566667899
Q ss_pred EEECCCCcEEEecCCCCCceeeE--------EeecCCEEEEEEeCC
Q 004141 417 SVNVSSGELLRITPAESNFSWSL--------LTLDGDNIIAVSSSP 454 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~--------~s~dg~~l~~~~~~~ 454 (771)
++|+++++.+.++........+. |+||| .++++.+..
T Consensus 222 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~ 266 (582)
T 3o4h_A 222 TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARRE 266 (582)
T ss_dssp EECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEET
T ss_pred EEcCCCCcEEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcC
Confidence 99999999883333333333345 99999 666665443
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=175.83 Aligned_cols=230 Identities=17% Similarity=0.201 Sum_probs=135.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.++++..+- ..|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~ 65 (271)
T 3ia2_A 4 VAKDGTQIYFKDWG--------SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQP-----WT 65 (271)
T ss_dssp ECTTSCEEEEEEES--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EcCCCCEEEEEccC--------CCCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCC---CccCCCC-----CC
Confidence 34567788655542 23568999997665 4568888889999999999999999 5544211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcC--CCCCc-c----
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGT--TDIPD-W---- 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~--~~~~~-~---- 665 (771)
....+++.+.+..+++. ++.+++.|+||||||.+++.+++. .|++++++|+.++.......... ...+. .
T Consensus 66 ~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (271)
T 3ia2_A 66 GNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARF 143 (271)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHHHHH
Confidence 22344444444444433 245789999999999877666555 48999999988764321100000 00000 0
Q ss_pred ---------hhhhhccCCCCccC-CCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEeeCCCC
Q 004141 666 ---------CYVESYGSKGKDSF-TESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 666 ---------~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~lii~G~~D~ 716 (771)
.+...+........ ........ ...+...+....+.++++|+|+++|++|.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lvi~G~~D~ 223 (271)
T 3ia2_A 144 KTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQ 223 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTCCSCEEEEEETTCS
T ss_pred HHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCCCCCEEEEEeCCCC
Confidence 00000000000000 00000000 00111122233467899999999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++|++.+.+++..+. ...++.+++++||.+.. +...++.+.+.+||+
T Consensus 224 ~~p~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 224 IVPFETTGKVAAELI---KGAELKVYKDAPHGFAV-THAQQLNEDLLAFLK 270 (271)
T ss_dssp SSCGGGTHHHHHHHS---TTCEEEEETTCCTTHHH-HTHHHHHHHHHHHHT
T ss_pred cCChHHHHHHHHHhC---CCceEEEEcCCCCcccc-cCHHHHHHHHHHHhh
Confidence 999987555544432 23789999999998763 345578888888885
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=168.40 Aligned_cols=222 Identities=14% Similarity=0.152 Sum_probs=142.7
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+...+|.+++..... +.|+||++||++.+ ...|...+..|+ .||.|+++|+|| +|.+...
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~S~~~------ 66 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALST--RAGGAPLAERLA-PHFTVICYDRRG---RGDSGDT------ 66 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCC--GGGGHHHHHHHT-TTSEEEEECCTT---STTCCCC------
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcC--hHHHHHHHHHHh-cCcEEEEEecCC---CcCCCCC------
Confidence 345567888765543 14789999997765 346777888887 899999999999 4444221
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcch--hhhh
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVES 670 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~--~~~~ 670 (771)
.....+++.+.+..+++. ++ +++.|+|||+||.+++.++.++| +++++|+.+|........... ...+. ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~~ 141 (262)
T 3r0v_A 67 PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPV-PPDYQTRLDAL 141 (262)
T ss_dssp SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCC-CTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchh-hhHHHHHHHHH
Confidence 123466666666666655 24 78999999999999999999999 999999999865432111000 00000 0000
Q ss_pred ccC--------CCCccCCCCCChhhHHHHh------------------------hcCcccccCCCCCcEEEEeeCCCCcc
Q 004141 671 YGS--------KGKDSFTESPSVEDLTRFH------------------------SKSPISHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 671 ~~~--------~~~~~~~~~~~~~~~~~~~------------------------~~sp~~~~~~i~~P~lii~G~~D~~v 718 (771)
... .........+ .+....+. ...+...+.++++|+|+++|++|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 220 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP-PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAW 220 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC-HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTCCHH
T ss_pred hhccchhhHHHHHhhcccCCC-HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCCCCC
Confidence 000 0000000000 01101110 11234557788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
|++.+..+.+.+.. +++++++++||. +...++.+.+.+||++
T Consensus 221 ~~~~~~~~~~~~~~----~~~~~~~~~gH~----~~p~~~~~~i~~fl~~ 262 (262)
T 3r0v_A 221 IRHTAQELADTIPN----ARYVTLENQTHT----VAPDAIAPVLVEFFTR 262 (262)
T ss_dssp HHHHHHHHHHHSTT----EEEEECCCSSSS----CCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHhCCC----CeEEEecCCCcc----cCHHHHHHHHHHHHhC
Confidence 99888888877643 799999999993 2456788888888853
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=203.38 Aligned_cols=326 Identities=9% Similarity=0.029 Sum_probs=200.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC--CCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE--NES 123 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~--~~~ 123 (771)
.|..| |++|+|... ..||++++ .+++.++|+... ..+..++|||||++|||.+... ++.
T Consensus 19 ~~~~S--~~~iaf~~~----------~~l~~~~~--~gg~~~~lt~~~-----~~v~~~~~SPDG~~la~~s~~~~~~~~ 79 (1045)
T 1k32_A 19 NPDIH--GDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNT 79 (1045)
T ss_dssp EEEEE--TTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCE
T ss_pred CcEEe--CCEEEEEEC----------CcEEEEEC--CCCcEEEeeeCC-----CcccCeEECCCCCEEEEEEeeccCCCC
Confidence 44445 458999863 37898876 445677887654 5688999999999999998762 244
Q ss_pred CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC---CCc--cCCCCC-----CCCCC
Q 004141 124 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK---PTF--SLGSTK-----GGSSD 192 (771)
Q Consensus 124 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~---~~~--~~~~~~-----~~~~~ 192 (771)
.++++++ .++..++++.......+.. .....++|||||+ |+|.+....... ..| ...... .....
T Consensus 80 ~~i~~~d~~~g~~~~lt~~~~~~~~~~---~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~ 155 (1045)
T 1k32_A 80 ADLYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPAT 155 (1045)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCS
T ss_pred CeEEEEECCCCCeEEcccCCCcccccc---cccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcc
Confidence 5777777 5555555443322210000 0014789999998 777765321100 000 000000 00000
Q ss_pred ---------------ccCCCC-----------------------------------------------------------
Q 004141 193 ---------------KDCNSW----------------------------------------------------------- 198 (771)
Q Consensus 193 ---------------~~~~~~----------------------------------------------------------- 198 (771)
.....|
T Consensus 156 ~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 156 HILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDG 235 (1045)
T ss_dssp EEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTS
T ss_pred eeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCC
Confidence 000000
Q ss_pred -----------CCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC---------CCCccceEEEe-cCCCCCccE
Q 004141 199 -----------KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---------KSLSVGQVVWA-PLNEGLHQY 257 (771)
Q Consensus 199 -----------~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~---------~~~~~~~~~ws-pDg~~~~~~ 257 (771)
.....|++|. ..++......|++||++++++..+.+.. ....+..++|| |||+.
T Consensus 236 ~~~~~l~~~~~~~~~~~SpDG-~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~---- 310 (1045)
T 1k32_A 236 KDLRKHTSFTDYYPRHLNTDG-RRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL---- 310 (1045)
T ss_dssp CSCEECCCCCSSCEEEEEESS-SCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC----
T ss_pred CcceEecCCCCcceeeEcCCC-CEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCE----
Confidence 0011233332 1121223455666666555544442100 01146789999 99999
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc-cccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|.+ ...|+.+++ .+++.++++.+.. .+..++|| ||+.|+|.+.
T Consensus 311 la~~~----------------~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 311 IAFVS----------------RGQAFIQDV-----------------SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp EEEEE----------------TTEEEEECT-----------------TSSBEEECSCCSCEEEEEECSS-SEEEEEEEET
T ss_pred EEEEE----------------cCEEEEEcC-----------------CCCceEEccCCCcceEEeeeEc-CCCeEEEEEC
Confidence 99986 127999998 7777778887777 78899999 9999999886
Q ss_pred CCCCCCCCccccccce-eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 337 KSSVDSGAHSATDSLH-RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
+ .+|| ++|+.++..+.++ ... ..+..++|||||+.|++... ...|
T Consensus 357 ~-----------~~l~~~~d~~~~~~~~l~-~~~-------------------~~~~~~~~SpDG~~la~~~~---~~~v 402 (1045)
T 1k32_A 357 E-----------GDFLGIYDYRTGKAEKFE-ENL-------------------GNVFAMGVDRNGKFAVVAND---RFEI 402 (1045)
T ss_dssp T-----------EEEEEEEETTTCCEEECC-CCC-------------------CSEEEEEECTTSSEEEEEET---TSEE
T ss_pred C-----------CceEEEEECCCCCceEec-CCc-------------------cceeeeEECCCCCEEEEECC---CCeE
Confidence 2 3689 9998876654443 110 12346789999998887654 2378
Q ss_pred EEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEEeCC------CCCCeEEEEEecc
Q 004141 416 ISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSP------VDVPQVKYGYFVD 467 (771)
Q Consensus 416 ~~~d~~tg~~~~l~-~~~~~~~~~~~s~dg~~l~~~~~~~------~~p~~l~~~~~~~ 467 (771)
+.+|+.+|+.+.+. .....+....|||||++|++..... ..+..+++.++.+
T Consensus 403 ~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 403 MTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred EEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 89999999998887 3334446688999999998887654 4456788887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=196.77 Aligned_cols=272 Identities=14% Similarity=0.114 Sum_probs=176.1
Q ss_pred ccceEEEeCCCCCeEEEEecC--CCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec--CCCCe-EEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN--SDETL-IAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS--pDg~~-la~~~~~ 173 (771)
..+..|++||+ +++|++.+ .++...+|.+..++..++++.....+...+...+ -..+.|| |||++ |+|.+..
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYS-GFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTC-CCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccC-CccceeeeecCCCeEEEEEECC
Confidence 45788999965 78888763 3344456655445555555543322211111111 0144565 99999 9997432
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--C-CceeeccCCC---CCCccceEEE
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--S-GEVQAVKGIP---KSLSVGQVVW 247 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~-~~~~~l~~~~---~~~~~~~~~w 247 (771)
...||+++++ + ++.+.++..+ .......++|
T Consensus 101 -------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 101 -------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp -------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred -------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 2579999998 5 8888884221 3446778999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC------CcceecC-CCCcccc
Q 004141 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED------LPVVNLT-ESISSAF 320 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~lt-~~~~~~~ 320 (771)
||||+. |+|++....... ......+||++|+ ++ ++.++|+ .+...+.
T Consensus 138 spDg~~----l~~~~~~~~~~~-----~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 138 LPERGE----VWCMAEEFTGEG-----PSDVRRFLAAVPL-----------------DGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp ETTTTE----EEEEEEEECSSS-----TTCEEEEEEEEET-----------------TSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCCCCE----EEEEEecccCCC-----CCCceeEEEEEEC-----------------CCCccccCCceeEEEecCCCccc
Confidence 999999 999885321000 0012248999998 66 7788888 7777788
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecC-CC---CCCCCccceeeEEecccccCCCCCcccccCCCCCCcc
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TN---GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~-~~---~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
+|+|||||++|+|.+.+.. +......+|+++|+. ++ +.++++... ......+.|
T Consensus 192 ~~~~SpDG~~la~~~~~~~---~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------------------~~~~~~~~~ 249 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHP---RMPWEGTELKTARVTEDGRFADTRTLLGGP-------------------EEAIAQAEW 249 (662)
T ss_dssp CCEECTTSSEEEEEEECTT---CCTTTCEEEEEEEECTTSCEEEEEEEEEET-------------------TBCEEEEEE
T ss_pred CceECCCCCEEEEEECCCC---CCCCCCcEEEEEEECCCCcccccEEeCCCC-------------------CceEcceEE
Confidence 9999999999999987642 111234679999998 45 222222110 012346789
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc---------eeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF---------SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~---------~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
||||+ |+|+++.++..+||.+|+++++.++++...... ....++++++ ++++.+. .-.+|+++++.+
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--CccEEEEEECCC
Confidence 99999 888887777779999999999999888654322 2334555655 5566655 556788887654
Q ss_pred c
Q 004141 468 K 468 (771)
Q Consensus 468 ~ 468 (771)
+
T Consensus 326 ~ 326 (662)
T 3azo_A 326 G 326 (662)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-17 Score=167.86 Aligned_cols=249 Identities=14% Similarity=0.155 Sum_probs=168.0
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCC
Q 004141 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 124 (771)
.....+|||+.|++.. ...++++++... ++..++.... ....+..++|||||++|++.....++..
T Consensus 45 ~~~~~spdg~~l~~~~----------~~~i~~~d~~~~-~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 45 EAPNWSPDGKYLLLNS----------EGLLYRLSLAGD-PSPEKVDTGF---ATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEECTTSSEEEEEE----------TTEEEEEESSSC-CSCEECCCTT---CCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred EeeEECCCCCEEEEEc----------CCeEEEEeCCCC-CCceEecccc---ccccccceEECCCCCEEEEEEeCCCCcc
Confidence 3445688999999863 137888777441 2344333221 1134567899999999999886554667
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004141 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.+|.+. .++....+... ... ..+.|||||++|+|.+...
T Consensus 111 ~l~~~~~~~~~~~~~~~~-~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 150 (297)
T 2ojh_A 111 AIYLLPSTGGTPRLMTKN-LPS----------YWHGWSPDGKSFTYCGIRD----------------------------- 150 (297)
T ss_dssp EEEEEETTCCCCEECCSS-SSE----------EEEEECTTSSEEEEEEEET-----------------------------
T ss_pred eEEEEECCCCceEEeecC-CCc----------cceEECCCCCEEEEEECCC-----------------------------
Confidence 888887 44443333222 112 4789999999999875432
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 204 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
+...||.+++.+++.+.+ ......+..+.|+|||+. |++.+... ....||
T Consensus 151 ------------~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~~~------------~~~~i~ 200 (297)
T 2ojh_A 151 ------------QVFDIYSMDIDSGVETRL--THGEGRNDGPDYSPDGRW----IYFNSSRT------------GQMQIW 200 (297)
T ss_dssp ------------TEEEEEEEETTTCCEEEC--CCSSSCEEEEEECTTSSE----EEEEECTT------------SSCEEE
T ss_pred ------------CceEEEEEECCCCcceEc--ccCCCccccceECCCCCE----EEEEecCC------------CCccEE
Confidence 225788888888888888 555556788999999998 88876322 234789
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 284 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+++ .++....++.....+..+.|||||++|++.+.+.............|+++|+.+++...
T Consensus 201 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 201 RVRV-----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp EEET-----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred EECC-----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence 9987 66777888877777889999999999999987642100000123679999998876533
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+.... . ....+..++|+|||+.|++.+...+
T Consensus 264 ~~~~~-------~----------~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 264 LFDLF-------G----------GQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEE-------E----------STTTSCSCCBCTTSSEEEEEEECCC
T ss_pred eeccC-------C----------CCcccccceECCCCCEEEEEEeccC
Confidence 32110 0 0113567899999999988876543
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=177.26 Aligned_cols=247 Identities=13% Similarity=0.160 Sum_probs=152.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------cchHHHH---HHHHCCcEEEEECCCC--CCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSLA---FLSSVGYSLLIVNYRG--SLGF 580 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------~~~~~~~---~la~~G~~Vv~~d~rG--~~~~ 580 (771)
+|..++...+.+. .....|+||++||.+...... .|...+. .|++.||.|+++|+|| .+..
T Consensus 29 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~~~G~s 105 (366)
T 2pl5_A 29 SPVVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSS 105 (366)
T ss_dssp SSEEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSS
T ss_pred cCceeeEEeccCc---CCCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCcccCCC
Confidence 4667776666554 223458899999977664310 3444442 3557899999999999 3433
Q ss_pred ChhhhhcC---C--CCccccchhhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 581 GEEALQSL---P--GKVGSQDVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 581 g~~~~~~~---~--~~~~~~~~~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
+....... . .......++++.+.+..+++. ++.+++ .|+||||||.+++.++.++|++++++|+.+|.....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~ 183 (366)
T 2pl5_A 106 GPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHS 183 (366)
T ss_dssp STTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCC
T ss_pred CCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCccCC
Confidence 22110000 0 000123567777777766665 345788 799999999999999999999999999999875431
Q ss_pred hhh---------cCCCCCcc-----------------------------hhhhhccCCCC-----------cc-------
Q 004141 655 LMV---------GTTDIPDW-----------------------------CYVESYGSKGK-----------DS------- 678 (771)
Q Consensus 655 ~~~---------~~~~~~~~-----------------------------~~~~~~~~~~~-----------~~------- 678 (771)
... .....+.| .+...+..... ..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (366)
T 2pl5_A 184 AMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGE 263 (366)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTC
T ss_pred CccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHHHH
Confidence 100 00000000 00000000000 00
Q ss_pred -CCCCCChhhH----HHHhhcCc------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe-CCCC
Q 004141 679 -FTESPSVEDL----TRFHSKSP------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF-PNDV 746 (771)
Q Consensus 679 -~~~~~~~~~~----~~~~~~sp------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~-~~~~ 746 (771)
+......... ..+..... ...+.++++|+|+++|++|.++|++.++.+++.+...+.+++++++ +++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 343 (366)
T 2pl5_A 264 SFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEG 343 (366)
T ss_dssp CSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBS
T ss_pred hhhcccChhHHHHHHhhhhhhccccccchhhhhccCCCCEEEEecCCCcccCHHHHHHHHHHhhhcccCeEEEEeCCCCC
Confidence 0000011111 11111111 2257789999999999999999999999999999976666899999 8999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHh
Q 004141 747 HGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 747 H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
|.+.... ..++.+.+.+||+++
T Consensus 344 H~~~~e~-p~~~~~~i~~fl~~~ 365 (366)
T 2pl5_A 344 HDSFLLK-NPKQIEILKGFLENP 365 (366)
T ss_dssp SGGGGSC-CHHHHHHHHHHHHCC
T ss_pred cchhhcC-hhHHHHHHHHHHccC
Confidence 9877544 358889999999764
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=172.92 Aligned_cols=231 Identities=13% Similarity=0.135 Sum_probs=140.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH-HHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~-~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|.++++..+-++ ..|.||++||.+.+ ...|... +..|+++||.|+++|+|| +|.+.... + ....
T Consensus 8 ~~g~~l~y~~~G~~------~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG---~G~S~~~~-~-~~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------ADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRD-F-AAHP 74 (298)
T ss_dssp ETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCC-T-TTSC
T ss_pred cCCeEEEEEeccCC------CCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCC---CCCCCCCC-C-CcCC
Confidence 35777876665432 24689999997765 3456664 488999999999999999 55443100 0 0112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-ch-hhh------h------cCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NL-ALM------V------GTT 660 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~-~~~------~------~~~ 660 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++.. .. ... . ...
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLP 152 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccCCCcccccchhhhhhhhhhhcccc
Confidence 3355555555555554 245689999999999999999999999999999987754 21 000 0 000
Q ss_pred CCC-cc--hhhhhcc-CCC--------C---ccC--CCC-CChhhH-------------------HHHh---hcCcccc-
Q 004141 661 DIP-DW--CYVESYG-SKG--------K---DSF--TES-PSVEDL-------------------TRFH---SKSPISH- 699 (771)
Q Consensus 661 ~~~-~~--~~~~~~~-~~~--------~---~~~--~~~-~~~~~~-------------------~~~~---~~sp~~~- 699 (771)
... .. .+..... ... . ... ... ...+.. ..+. ..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (298)
T 1q0r_A 153 GPQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAE 232 (298)
T ss_dssp CCCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGG
T ss_pred cccHHHHHHHhccCcccccHHHHHHHHHHhhhhccCCCCCCCHHHHHHHHHHHhhccCCccchhhhhhhhhcCccccccc
Confidence 000 00 0000000 000 0 000 000 000000 0000 0011224
Q ss_pred cCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 700 ~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+.++++|+|+++|++|..+|++.++.+.+.+. ..++++++++||.. ..++.+.+.+||.+++
T Consensus 233 l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gHe~-----p~~~~~~i~~fl~~~~ 294 (298)
T 1q0r_A 233 LREVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHAL-----PSSVHGPLAEVILAHT 294 (298)
T ss_dssp GGGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSC-----CGGGHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEeCCCccCCHHHHHHHHHhCC----CCEEEEcCCCCCCC-----cHHHHHHHHHHHHHHh
Confidence 67889999999999999999988887776654 37999999999922 2467889999998764
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=170.18 Aligned_cols=217 Identities=17% Similarity=0.235 Sum_probs=134.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc-chhhHHHHHHHHHHcCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ-DVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~-~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+..... ..... ..+|+.++++++.+.+ .
T Consensus 16 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---hG~s~~~~~--~~~~~~~~~d~~~~~~~l~~~~---~ 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEELV--HTGPDDWWQDVMNGYEFLKNKG---Y 85 (247)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHHT--TCCHHHHHHHHHHHHHHHHHHT---C
T ss_pred CcEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCC---CCCCHHHhc--CCCHHHHHHHHHHHHHHHHHcC---C
Confidence 3679999997655 3467778888989999999999999 443322111 11111 1355666666665543 3
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch---hhhhc-CCCCCcchhhhhccCC------CCccCCCCC--
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---ALMVG-TTDIPDWCYVESYGSK------GKDSFTESP-- 683 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~---~~~~~-~~~~~~~~~~~~~~~~------~~~~~~~~~-- 683 (771)
+++.|+||||||.+++.++.++| ++++|+.++.... ..... ...... .+....... ....+...+
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAR-EYKKREGKSEEQIEQEMEKFKQTPMK 162 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHH-HHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHH-HhhcccccchHHHHhhhhcccCCCHH
Confidence 68999999999999999999988 7777754432210 00000 000000 000000000 000000000
Q ss_pred ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 684 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
.......+. .+....+.++++|+|+++|++|..+|++.++.+++.+.. ..+++++++++||.....+....+.+.+.
T Consensus 163 ~~~~~~~~~-~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~--~~~~~~~~~~~gH~~~~e~~~~~~~~~i~ 239 (247)
T 1tqh_A 163 TLKALQELI-ADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES--PVKQIKWYEQSGHVITLDQEKDQLHEDIY 239 (247)
T ss_dssp THHHHHHHH-HHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC--SSEEEEEETTCCSSGGGSTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC--CceEEEEeCCCceeeccCccHHHHHHHHH
Confidence 000111110 122345678999999999999999999998888877643 24789999999998766555568889999
Q ss_pred HHHHHh
Q 004141 764 LWFKKY 769 (771)
Q Consensus 764 ~fl~~~ 769 (771)
+||++.
T Consensus 240 ~Fl~~~ 245 (247)
T 1tqh_A 240 AFLESL 245 (247)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999863
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=175.63 Aligned_cols=218 Identities=15% Similarity=0.198 Sum_probs=139.9
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... ......++++.+.+..+++.. +.
T Consensus 14 ~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~l--~~ 81 (268)
T 3v48_A 14 DAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRG---TGNNPDT----LAEDYSIAQMAAELHQALVAA--GI 81 (268)
T ss_dssp TCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTT---BTTBCCC----CCTTCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCC---CCCCCCC----ccccCCHHHHHHHHHHHHHHc--CC
Confidence 46889999997665 4468888888854 79999999999 5554211 111234666666666666652 34
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-----------CCCCCcchhh-------hhccCCCC-
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TTDIPDWCYV-------ESYGSKGK- 676 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----------~~~~~~~~~~-------~~~~~~~~- 676 (771)
+++.|+||||||.+++.++.++|++++++|+.++......... ......+... ..+.....
T Consensus 82 ~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (268)
T 3v48_A 82 EHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAP 161 (268)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTHH
T ss_pred CCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcccc
Confidence 6899999999999999999999999999999887542110000 0000000000 00000000
Q ss_pred -------ccCCCCCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 677 -------DSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 677 -------~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
........... ...+...+....+.++++|+|+++|++|..+|++.++.+.+.+.. .++++++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~----~~~~~~~~~ 237 (268)
T 3v48_A 162 RLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPD----SQKMVMPYG 237 (268)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCSS----EEEEEESSC
T ss_pred cchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCCc----CeEEEeCCC
Confidence 00000000000 111122233345778999999999999999999988888877654 789999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHhh
Q 004141 746 VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
||.... +....+.+.|.+||.+.+
T Consensus 238 GH~~~~-e~p~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 238 GHACNV-TDPETFNALLLNGLASLL 261 (268)
T ss_dssp CTTHHH-HCHHHHHHHHHHHHHHHH
T ss_pred Ccchhh-cCHHHHHHHHHHHHHHhc
Confidence 997653 445578889999998754
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=173.39 Aligned_cols=227 Identities=19% Similarity=0.251 Sum_probs=136.6
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+.+|.+++.... + ..|.||++||++.+ ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 12 ~~~~g~~l~y~~~------G--~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~ 73 (281)
T 3fob_A 12 ENQAPIEIYYEDH------G--TGKPVVLIHGWPLS--GRSWEYQVPALVEAGYRVITYDRRG---FGKSSQP-----WE 73 (281)
T ss_dssp ETTEEEEEEEEEE------S--SSEEEEEECCTTCC--GGGGTTTHHHHHHTTEEEEEECCTT---STTSCCC-----SS
T ss_pred CCCCceEEEEEEC------C--CCCeEEEECCCCCc--HHHHHHHHHHHHhCCCEEEEeCCCC---CCCCCCC-----cc
Confidence 3455666654433 1 23678999998765 3467777888999999999999999 5544211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhh-cC-CCCCc-c----
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-GT-TDIPD-W---- 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~-~~-~~~~~-~---- 665 (771)
....+++.+.+..+++. ++.+++.|+||||||.+++.+++. +|++++++|+.++........ .. ..... .
T Consensus 74 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (281)
T 3fob_A 74 GYEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAVPPYLYKSEDHPEGALDDATIET 151 (281)
T ss_dssp CCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSSTTCSBCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCCCcchhccccccccccchhHHHH
Confidence 23455555555555555 245689999999999987776655 589999999887642110000 00 00000 0
Q ss_pred ----------hhh----hhccCCCCccCCCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEee
Q 004141 666 ----------CYV----ESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLG 712 (771)
Q Consensus 666 ----------~~~----~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~lii~G 712 (771)
.+. ..+..... ......... ...+...+....+.++++|+|+++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G 229 (281)
T 3fob_A 152 FKSGVINDRLAFLDEFTKGFFAAGD--RTDLVSESFRLYNWDIAAGASPKGTLDCITAFSKTDFRKDLEKFNIPTLIIHG 229 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCBTT--BCCSSCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEE
T ss_pred HHHHhhhhHHHHHHHHHHHhccccc--ccccchHHHHHHhhhhhcccChHHHHHHHHHccccchhhhhhhcCCCEEEEec
Confidence 000 00000000 000000000 0111122333457889999999999
Q ss_pred CCCCccCcHHH-HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 713 AQDLRVPVSNG-LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 713 ~~D~~vp~~~~-~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++|..+|++.+ +.+.+.+. +.++++++++||.+.. +...++.+.+.+||+
T Consensus 230 ~~D~~~p~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 280 (281)
T 3fob_A 230 DSDATVPFEYSGKLTHEAIP----NSKVALIKGGPHGLNA-THAKEFNEALLLFLK 280 (281)
T ss_dssp TTCSSSCGGGTHHHHHHHST----TCEEEEETTCCTTHHH-HTHHHHHHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHhCC----CceEEEeCCCCCchhh-hhHHHHHHHHHHHhh
Confidence 99999999876 44434333 3789999999998653 344578888888875
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.6e-18 Score=175.33 Aligned_cols=233 Identities=14% Similarity=0.134 Sum_probs=149.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECCCCCCCCChhhhhc--CCCCc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQS--LPGKV 592 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~Vv~~d~rG~~~~g~~~~~~--~~~~~ 592 (771)
+.++..+ +.|. .+++|+||++||++.......|... .+.+++.||.|+++|++++..+.. +... ..+..
T Consensus 20 ~~~i~v~-~~p~----~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~-~~~~~~~~g~~ 93 (304)
T 1sfr_A 20 GRDIKVQ-FQSG----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSD-WYQPACGKAGC 93 (304)
T ss_dssp TEEEEEE-EECC----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCB-CSSCEEETTEE
T ss_pred CCceEEE-ECCC----CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCccccc-cCCcccccccc
Confidence 4567666 4443 2678999999997532223344432 356778899999999987543321 1000 00000
Q ss_pred cccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-------CCCC
Q 004141 593 GSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-------TDIP 663 (771)
Q Consensus 593 ~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-------~~~~ 663 (771)
.....+++. +.+.++.++..+++++++|+|+||||++|+.++.++|++|+++++.+|..+....... ....
T Consensus 94 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~~~~~~ 173 (304)
T 1sfr_A 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAG 173 (304)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccchhhhhhHhhhhcc
Confidence 112233322 3344444433467789999999999999999999999999999999998754321000 0000
Q ss_pred cchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEeeCCCC--------------ccCcHHHHHH
Q 004141 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQY 726 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~lii~G~~D~--------------~vp~~~~~~~ 726 (771)
.+.....++. + ....+...+|...+.++ .+|+++++|+.|+ .++.++++++
T Consensus 174 ~~~~~~~~g~---------~---~~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~ 241 (304)
T 1sfr_A 174 GYKASDMWGP---------K---EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKF 241 (304)
T ss_dssp SCCHHHHHCS---------T---TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhcCC---------c---chhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHH
Confidence 0000011111 1 11245566676555544 5899999999998 6788999999
Q ss_pred HHHHHhCC-CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 727 ARALREKG-VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 727 ~~~l~~~g-~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++.|++.| +++++.++++++|.+. .....+..++.||.++|+
T Consensus 242 ~~~L~~~G~~~v~~~~~~~g~H~~~---~w~~~l~~~l~~l~~~l~ 284 (304)
T 1sfr_A 242 QDAYNAGGGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALG 284 (304)
T ss_dssp HHHHHHTTCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHT
T ss_pred HHHHHhCCCCceEEEecCCCccCHH---HHHHHHHHHHHHHHHhcC
Confidence 99999999 9999999987799752 123556778889988764
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=173.25 Aligned_cols=213 Identities=18% Similarity=0.280 Sum_probs=131.9
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .....+++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQPT-----TGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCC---CCCCCCCC-----CCccHHHHHHHHHHHHHH--hCCCc
Confidence 459999997765 4578888999999999999999999 55543211 122344444444444433 23468
Q ss_pred EEEEEcChhHHHHHHHHhhCCC-ceeEEEecCCccchhhhh-cCCC--CC-cc-------------hhhhhccCCCCcc-
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMV-GTTD--IP-DW-------------CYVESYGSKGKDS- 678 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~~-~~~~--~~-~~-------------~~~~~~~~~~~~~- 678 (771)
+.|+||||||.+++.++.++|+ +++++|+.++........ .... .+ .. .....+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNLD 171 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTHH
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 9999999999999999999998 999999988743211000 0000 00 00 0000000000000
Q ss_pred --CCCCCChhhHHHH----------------h--hcCcccccCCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCCE
Q 004141 679 --FTESPSVEDLTRF----------------H--SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 737 (771)
Q Consensus 679 --~~~~~~~~~~~~~----------------~--~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 737 (771)
.......+....+ . ..+....+.++++|+|+++|++|..+|++.+ +.+.+.+.. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~----~ 247 (277)
T 1brt_A 172 ENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKALPS----A 247 (277)
T ss_dssp HHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHHCTT----S
T ss_pred ccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhcccCCCCeEEEecCCCccCChHHHHHHHHHHCCC----C
Confidence 0000011111100 0 1122235678899999999999999999887 777766543 6
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++++++++||..... ...++.+.+.+||+
T Consensus 248 ~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 276 (277)
T 1brt_A 248 EYVEVEGAPHGLLWT-HAEEVNTALLAFLA 276 (277)
T ss_dssp EEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred cEEEeCCCCcchhhh-CHHHHHHHHHHHHh
Confidence 899999999986533 45578888888986
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-17 Score=187.37 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=175.5
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+..++|||| ++++|..+ ..+++++ .+++..+++...... ..++|||||++|+|+.
T Consensus 83 ~v~~~~~spd-~~~~~~~~-----~~i~~~d~~~~~~~~l~~~~~~~----------~~~~~SpdG~~la~~~------- 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQ-----GGLVGFDMLARKVTYLFDTNEET----------ASLDFSPVGDRVAYVR------- 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEET-----TEEEEEETTTTEEEEEECCTTCC----------TTCEECTTSSEEEEEE-------
T ss_pred CceeEEECCC-CeEEEEEC-----CEEEEEECCCCceEEccCCcccc----------cCCcCCCCCCEEEEEE-------
Confidence 4778999999 88888755 3466655 555555555443333 5899999999999962
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC-----CceeeccCCCCCCc------------
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLS------------ 241 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----~~~~~l~~~~~~~~------------ 241 (771)
...|++||+.+ ++.+++ +.....
T Consensus 140 --------------------------------------~~~i~v~~~~~~~~~~g~~~~~--~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 140 --------------------------------------NHNLYIARGGKLGEGMSRAIAV--TIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp --------------------------------------TTEEEEEECBCTTSCCCCCEES--CSCCBTTEEESSCCGGGC
T ss_pred --------------------------------------CCeEEEEecCcccccCCCcEEe--ccCCCCCeEcccchhhhh
Confidence 25799999999 888887 333222
Q ss_pred ---cceEEEecCCCCCccEEEEEeecCccee--------------eeeeee----ccCCceeEEEecccccchhhhhhhh
Q 004141 242 ---VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 242 ---~~~~~wspDg~~~~~~l~~~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
+..+.|||||+. |+|.+....... ....|. .+....|+++|+
T Consensus 180 ~~~~~~~~~SpDg~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------------- 242 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSC----LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------------- 242 (706)
T ss_dssp TTCCCSEEECTTSSE----EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-------------
T ss_pred cCCCceEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-------------
Confidence 478999999999 999874321100 000000 113357999998
Q ss_pred cCCCCCCcceecCC---CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC-CCCCCccceeeEEeccc
Q 004141 301 ESSSEDLPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 301 ~~~~~~~~~~~lt~---~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~ 376 (771)
++++.+.+.. ....+..+.|||||++|++.+.+.. .....|+++|+.++ ..+.+....
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~v~~~d~~~g~~~~~~~~~~-------- 304 (706)
T 2z3z_A 243 ----ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA------QNECKVNAYDAETGRFVRTLFVET-------- 304 (706)
T ss_dssp ----TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT------SCEEEEEEEETTTCCEEEEEEEEE--------
T ss_pred ----CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC------CCeeEEEEEECCCCceeeEEEEcc--------
Confidence 7777666653 2345788999999999999876531 23467999999887 322221110
Q ss_pred ccCCCCCcccccCCCCCCcccc--CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCcee-eEEeecCCEEEEEEeC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLTLDGDNIIAVSSS 453 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~--Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~-~~~s~dg~~l~~~~~~ 453 (771)
... |......+.||| ||+ +++++..++..+||.++.+++.++.++........ ..|++||+.|++..+.
T Consensus 305 ---~~~----~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 305 ---DKH----YVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp ---CSS----CCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred ---CCC----eECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 000 101134678999 998 55666667788999999878888888776544433 6899999999888765
Q ss_pred CCC-CCeEEEEEeccc
Q 004141 454 PVD-VPQVKYGYFVDK 468 (771)
Q Consensus 454 ~~~-p~~l~~~~~~~~ 468 (771)
... -..||..++.++
T Consensus 377 ~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCTTCBEEEEEETTCC
T ss_pred CCCceEEEEEEEcCCC
Confidence 321 246787776543
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-18 Score=165.98 Aligned_cols=187 Identities=13% Similarity=0.076 Sum_probs=119.0
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+|||+||...+..........+++.++ +|.|++||++| +|.+ ..+.++.++.. .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~---~g~~----------------~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPP---YPAE----------------AAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCS---SHHH----------------HHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCC---CHHH----------------HHHHHHHHHHh--cC
Confidence 48999999965443222223345566665 59999999998 4432 23334444433 24
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 694 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (771)
.++|+|+|+||||++|+.++.++|.....++...+............. .+. . ...+. ..... .....
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~---~~~~~--~~~~~--~~~~~ 127 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGENQ-NPY-----T---GQKYV--LESRH--IYDLK 127 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEEE-CTT-----T---CCEEE--ECHHH--HHHHH
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhhc-ccc-----c---ccccc--chHHH--HHHHH
Confidence 678999999999999999999999887777665554332211100000 000 0 00000 00111 11122
Q ss_pred CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 695 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 695 sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.....+.++++|+|++||++|.+||++++.++++ ++++++++|++|.+... .++++.|.+||+
T Consensus 128 ~~~~~~~~~~~P~LiihG~~D~~Vp~~~s~~l~~-------~~~l~i~~g~~H~~~~~---~~~~~~I~~FL~ 190 (202)
T 4fle_A 128 AMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYT-------PCRQTVESGGNHAFVGF---DHYFSPIVTFLG 190 (202)
T ss_dssp TTCCSSCSCGGGEEEEEETTCSSSCHHHHHHHTT-------TSEEEEESSCCTTCTTG---GGGHHHHHHHHT
T ss_pred hhhhhhhccCceEEEEEeCCCCCCCHHHHHHHhh-------CCEEEEECCCCcCCCCH---HHHHHHHHHHHh
Confidence 3344567788999999999999999999888763 36899999999987543 356888999986
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=168.92 Aligned_cols=230 Identities=16% Similarity=0.188 Sum_probs=137.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+.|+ ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 6 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~~~ 69 (276)
T 1zoi_A 6 TKDGVQIFYKDWGPR------DAPVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRG---HGRSSQV-----WDG 69 (276)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred CCCCcEEEEEecCCC------CCCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC-----CCC
Confidence 346777876665442 23679999997655 4468888899999999999999999 5554321 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhcCC--CCCcch-----
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTT--DIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~~~--~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++........... ..+...
T Consensus 70 ~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (276)
T 1zoi_A 70 HDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVFDGFQ 147 (276)
T ss_dssp CSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCCCccccccccccccccHHHHHHHH
Confidence 2344444444444333 2346799999999999999988777 99999999988643110000000 000000
Q ss_pred ---------hhhhccC-CCC--ccCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEeeCCC
Q 004141 667 ---------YVESYGS-KGK--DSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~~~--~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
....+.. ... .............. +...+....+.++++|+|+++|++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D 227 (276)
T 1zoi_A 148 AQVASNRAQFYRDVPAGPFYGYNRPGVEASEGIIGNWWRQGMIGSAKAHYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDD 227 (276)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHHhHHHHHHHhhhccccccccccccccHHHHHHHHhhhhhhhHHHHHHHHHHhcccchhhhccccCCCEEEEEcCCC
Confidence 0000000 000 00000001111000 1111222346678999999999999
Q ss_pred CccCcHHHHH-HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 716 LRVPVSNGLQ-YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~-~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
..+|++...+ +.+.+. +.++++++++||.+.. +...++.+.+.+||+
T Consensus 228 ~~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 275 (276)
T 1zoi_A 228 QIVPYENSGVLSAKLLP----NGALKTYKGYPHGMPT-THADVINADLLAFIR 275 (276)
T ss_dssp SSSCSTTTHHHHHHHST----TEEEEEETTCCTTHHH-HTHHHHHHHHHHHHT
T ss_pred cccChHHHHHHHHhhCC----CceEEEcCCCCCchhh-hCHHHHHHHHHHHhc
Confidence 9999874443 333332 4899999999998653 345578888888885
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=167.16 Aligned_cols=229 Identities=18% Similarity=0.251 Sum_probs=136.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+. ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~g--------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (273)
T 1a8s_A 5 TRDGTQIYYKDWG--------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQP-----WSG 66 (273)
T ss_dssp CTTSCEEEEEEES--------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred cCCCcEEEEEEcC--------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCC---CCCCCCC-----CCC
Confidence 3456677544331 23679999997655 4468888899999999999999999 5544211 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhcC-C-CCCcch-----
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~~-~-~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.......... . ......
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (273)
T 1a8s_A 67 NDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFDGIR 144 (273)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEcccCcccccCccccccCcHHHHHHHH
Confidence 2344554444444444 3456899999999999999877765 8999999988864211000000 0 000000
Q ss_pred ---------hhhhccC-C--CCccCCCCCChhhHH-------------------HHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 667 ---------YVESYGS-K--GKDSFTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~--~~~~~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
....+.. . ............... .+...+....+.++++|+|+++|++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 224 (273)
T 1a8s_A 145 QASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHGDAD 224 (273)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEETTC
T ss_pred HHhHhhHHHHHHHhhcccccCcCCcccccCHHHHHHHHHhccccchhHHHHHHHHHhccChhhhhhcCCCCEEEEECCCC
Confidence 0000000 0 000000000101000 01112223346789999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
..+|++...+.+..+. .+.++++++++||.+.. +...++.+.+.+||+
T Consensus 225 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 272 (273)
T 1a8s_A 225 QVVPIEASGIASAALV---KGSTLKIYSGAPHGLTD-THKDQLNADLLAFIK 272 (273)
T ss_dssp SSSCSTTTHHHHHHHS---TTCEEEEETTCCSCHHH-HTHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHhC---CCcEEEEeCCCCCcchh-hCHHHHHHHHHHHHh
Confidence 9999885444333332 24789999999998753 345578888999986
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=166.66 Aligned_cols=231 Identities=15% Similarity=0.194 Sum_probs=137.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+.|+ ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 68 (275)
T 1a88_A 5 TSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----STG 68 (275)
T ss_dssp CTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred ccCCCEEEEEEcCCC------CCceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCc---CCCCCCC-----CCC
Confidence 346777876655432 23679999997655 4468888899999999999999999 5544211 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhc--CCCCCcch-----
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVG--TTDIPDWC----- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~--~~~~~~~~----- 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++......... ....+...
T Consensus 69 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (275)
T 1a88_A 69 HDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEFR 146 (275)
T ss_dssp CSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCCCcccccCccCcccCCHHHHHHHH
Confidence 2344444444444433 2346899999999999999877776 999999999886431100000 00000000
Q ss_pred ---------hhhhccC-C--CCccCCCCCChhhHHH-------------------HhhcCcccccCCCCCcEEEEeeCCC
Q 004141 667 ---------YVESYGS-K--GKDSFTESPSVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 ---------~~~~~~~-~--~~~~~~~~~~~~~~~~-------------------~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
....+.. . ................ +...+....+.++++|+|+++|++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D 226 (275)
T 1a88_A 147 AALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTDD 226 (275)
T ss_dssp HHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHhhhHHHHHHhhhccccccccCcccccCHHHHHHHHHHhhhcchHhHHHHHhhhhhcccccccccCCCCEEEEecCCC
Confidence 0000000 0 0000000001111000 1111222345678999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
..+|++...+.+..+. .++++++++++||.+.. +...++.+.+.+||+
T Consensus 227 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 274 (275)
T 1a88_A 227 QVVPYADAAPKSAELL---ANATLKSYEGLPHGMLS-THPEVLNPDLLAFVK 274 (275)
T ss_dssp SSSCSTTTHHHHHHHS---TTEEEEEETTCCTTHHH-HCHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHhhC---CCcEEEEcCCCCccHHH-hCHHHHHHHHHHHhh
Confidence 9999875444333322 24899999999998753 345678888999985
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7e-18 Score=173.24 Aligned_cols=229 Identities=14% Similarity=0.106 Sum_probs=143.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|.++++..+-|+ ..|+||++||++.+ .. .|...+..| +.||.|+++|+|| +|.+... +.....
T Consensus 10 ~~g~~l~~~~~G~~------~~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~--~~~~~~ 75 (286)
T 2yys_A 10 VGEAELYVEDVGPV------EGPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRG---SGRSLEL--PQDPRL 75 (286)
T ss_dssp CSSCEEEEEEESCT------TSCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTT---STTSCCC--CSCGGG
T ss_pred ECCEEEEEEeecCC------CCCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCC---CCCCCCC--ccCccc
Confidence 35777877666442 34789999998765 44 577777777 5689999999999 5554310 111012
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh----hh-cC--CCCCc-ch
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MV-GT--TDIPD-WC 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----~~-~~--~~~~~-~~ 666 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.++.++|+ ++++|+.+|...... .. .. ..... ..
T Consensus 76 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (286)
T 2yys_A 76 FTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAPLPDPEE 152 (286)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCCCSCHHH
T ss_pred CcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhccccchhHHH
Confidence 3455555555555554 234689999999999999999999999 999999998653221 00 00 00000 00
Q ss_pred -hh------------hhc--cCC-------CC-ccCCCCCChhhHH-----HHhhcCcccccCCCCCcEEEEeeCCCCcc
Q 004141 667 -YV------------ESY--GSK-------GK-DSFTESPSVEDLT-----RFHSKSPISHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 667 -~~------------~~~--~~~-------~~-~~~~~~~~~~~~~-----~~~~~sp~~~~~~i~~P~lii~G~~D~~v 718 (771)
.. ..+ ... .. ..+.......... .....+....+.++++|+|+++|++|..+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 232 (286)
T 2yys_A 153 NLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPERRPLYVLVGERDGTS 232 (286)
T ss_dssp HHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCCSSCEEEEEETTCTTT
T ss_pred HHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhcCCCEEEEEeCCCCcC
Confidence 00 000 000 00 0000000000000 01111233456788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
|++ ++.+.+ +.. .++++++++||...... ..++.+.+.+||++
T Consensus 233 ~~~-~~~~~~-~~~----~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 275 (286)
T 2yys_A 233 YPY-AEEVAS-RLR----APIRVLPEAGHYLWIDA-PEAFEEAFKEALAA 275 (286)
T ss_dssp TTT-HHHHHH-HHT----CCEEEETTCCSSHHHHC-HHHHHHHHHHHHHT
T ss_pred CHh-HHHHHh-CCC----CCEEEeCCCCCCcChhh-HHHHHHHHHHHHHh
Confidence 999 888888 765 57889999999866443 46788899999976
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=171.06 Aligned_cols=221 Identities=14% Similarity=0.107 Sum_probs=138.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
....|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... ......++..+.+..+++.- -
T Consensus 9 ~~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~----~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 9 PFVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGA---SGINPKQA----LQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp -CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEecccc---CCCCCCcC----CccCCHHHHHHHHHHHHHhc-C
Confidence 3456899999997765 4578888999999999999999999 44442210 11134555555555555542 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----hhcCC--CCCcchhhhhc-cCC--C--------
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTT--DIPDWCYVESY-GSK--G-------- 675 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-----~~~~~--~~~~~~~~~~~-~~~--~-------- 675 (771)
+.+++.|+|||+||.+++.++.++|++++++|+.++...... ..... ....|...... ... .
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 467899999999999999999999999999998887542210 00000 00011000000 000 0
Q ss_pred ----CccCCCCCChhhHHH---------------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 676 ----KDSFTESPSVEDLTR---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 676 ----~~~~~~~~~~~~~~~---------------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
...+......+.... +............++|+|+++|++|..+|++..+.+.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---- 234 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVLSSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPP---- 234 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCCCTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhcccccccCCCEEEEEeCCCCccCHHHHHHHHHhCCC----
Confidence 000000111111110 111111111222358999999999999999888888776643
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++++++||.+.. +...++.+.+.+|++++
T Consensus 235 ~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~ 266 (267)
T 3sty_A 235 DEVKEIEGSDHVTMM-SKPQQLFTTLLSIANKY 266 (267)
T ss_dssp SEEEECTTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCccccc-cChHHHHHHHHHHHHhc
Confidence 689999999998654 34567888899999874
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=167.96 Aligned_cols=228 Identities=15% Similarity=0.198 Sum_probs=137.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++..+. ..|+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... ...
T Consensus 5 ~~~g~~l~y~~~g--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (274)
T 1a8q_A 5 TRDGVEIFYKDWG--------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPV-----WDG 66 (274)
T ss_dssp CTTSCEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred ccCCCEEEEEecC--------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCC---CCCCCCC-----CCC
Confidence 3456677654431 23679999997655 4468888889999999999999999 5544211 112
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhcC-C-CCCcchh----
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGT-T-DIPDWCY---- 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~~-~-~~~~~~~---- 667 (771)
...+++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.......... . .......
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (274)
T 1a8q_A 67 YDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALK 144 (274)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHHHHHH
Confidence 2344555444444444 2456899999999999999877766 8999999998864311000000 0 0000000
Q ss_pred ----------hh----hccCCCCccCCCCCChhhH-------------------HHHhhcCcccccCCCCCcEEEEeeCC
Q 004141 668 ----------VE----SYGSKGKDSFTESPSVEDL-------------------TRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 668 ----------~~----~~~~~~~~~~~~~~~~~~~-------------------~~~~~~sp~~~~~~i~~P~lii~G~~ 714 (771)
.. .+.. ............. ..+...+....+.++++|+|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~ 222 (274)
T 1a8q_A 145 NGVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDD 222 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETT
T ss_pred HHhhccHHHHHHHhcccccc--cccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcCCCCEEEEecCc
Confidence 00 0000 0000000000000 00111223345678999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC-CChHHHHHHHHHHHH
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP-QSDFESFLNIGLWFK 767 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~-~~~~~~~~~i~~fl~ 767 (771)
|..+|++...+.+..+. .+.++++++++||.+... +...++.+.+.+||+
T Consensus 223 D~~~~~~~~~~~~~~~~---~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 223 DQVVPIDATGRKSAQII---PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp CSSSCGGGTHHHHHHHS---TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHhhC---CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 99999885444333321 247899999999987754 245678888888885
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=177.12 Aligned_cols=221 Identities=17% Similarity=0.195 Sum_probs=141.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++....+ .|+||++||++.. ...|...+..|++ ||.|+++|+||. |.+. .......
T Consensus 56 ~~~~~~~~~~g~--------~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G~---G~S~-----~~~~~~~ 116 (314)
T 3kxp_A 56 GRITLNVREKGS--------GPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRGH---GLSD-----KPETGYE 116 (314)
T ss_dssp SSCEEEEEEECC--------SSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTTS---TTSC-----CCSSCCS
T ss_pred CCEEEEEEecCC--------CCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCCc---CCCC-----CCCCCCC
Confidence 566676554422 5789999997755 3467777777766 799999999994 4432 1122234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh--------cCCC--CCcch
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------GTTD--IPDWC 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~--------~~~~--~~~~~ 666 (771)
.+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|........ .... ...+.
T Consensus 117 ~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (314)
T 3kxp_A 117 ANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIK 194 (314)
T ss_dssp HHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHH
T ss_pred HHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHH
Confidence 56666666666554 234789999999999999999999999999999998765321110 0000 00000
Q ss_pred hhhhccCCCCccCCCCCChhhHHHH---------------------------hhcCcccccCCCCCcEEEEeeCCCCccC
Q 004141 667 YVESYGSKGKDSFTESPSVEDLTRF---------------------------HSKSPISHISKVKTPTIFLLGAQDLRVP 719 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~sp~~~~~~i~~P~lii~G~~D~~vp 719 (771)
....+. ...+... .......+ ...+....+.++++|+|+++|++|..+|
T Consensus 195 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~~~ 270 (314)
T 3kxp_A 195 AVEAYL---AGRYPNI-PADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIVRGESSKLVS 270 (314)
T ss_dssp HHHHHH---HHHSTTS-CHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEEEETTCSSSC
T ss_pred HHHHHH---HhhcccC-chHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEEecCCCccCC
Confidence 000000 0000000 00000000 0113444567789999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 720 VSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 720 ~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++.+..+.+.+.. +++++++++||.+.. +....+.+.+.+||+
T Consensus 271 ~~~~~~~~~~~~~----~~~~~~~g~gH~~~~-e~~~~~~~~i~~fl~ 313 (314)
T 3kxp_A 271 AAALAKTSRLRPD----LPVVVVPGADHYVNE-VSPEITLKAITNFID 313 (314)
T ss_dssp HHHHHHHHHHCTT----SCEEEETTCCSCHHH-HCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC----ceEEEcCCCCCcchh-hCHHHHHHHHHHHHh
Confidence 9998888877643 688999999998653 334577888888886
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=183.14 Aligned_cols=232 Identities=16% Similarity=0.205 Sum_probs=142.8
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+.+.+|..++.... + ..|+||++||++.. ...|...+..|+++||.|+++|+||. |.+... .
T Consensus 8 ~~~~dG~~l~y~~~------G--~gp~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG~---G~S~~~-----~ 69 (456)
T 3vdx_A 8 QENSTSIDLYYEDH------G--TGVPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRGF---GQSSQP-----T 69 (456)
T ss_dssp EETTEEEEEEEEEE------S--SSEEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTTS---TTSCCC-----S
T ss_pred ccccCCeEEEEEEe------C--CCCEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCCC---CCCCCC-----C
Confidence 34556777764332 1 34899999998765 34677788899899999999999994 443211 1
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhcCCCCCc-------
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVGTTDIPD------- 664 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~~~~~~~------- 664 (771)
....++++.+.+..+++. ++.++++|+|||+||.+++.+++.+ |++++++|+.+|...............
T Consensus 70 ~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~~~~~~~ 147 (456)
T 3vdx_A 70 TGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAAPQEFFD 147 (456)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSBCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccchHHHHH
Confidence 122344444444444433 2456899999999999999888876 899999999998753211100000000
Q ss_pred ----------chh----hhhccCCCCccCCCCCChhhHHHH------------------hhcCcccccCCCCCcEEEEee
Q 004141 665 ----------WCY----VESYGSKGKDSFTESPSVEDLTRF------------------HSKSPISHISKVKTPTIFLLG 712 (771)
Q Consensus 665 ----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~sp~~~~~~i~~P~lii~G 712 (771)
... ...+... ...............+ ...+....+.++++|+|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~PvLiI~G 226 (456)
T 3vdx_A 148 GIVAAVKADRYAFYTGFFNDFYNL-DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHG 226 (456)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTT-TTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTCCSCCEEEEE
T ss_pred HHHHhhhccchHHHHHHHHHHhcc-cccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhCCCCEEEEEe
Confidence 000 0000000 0000000000000000 012333456788999999999
Q ss_pred CCCCccCcH-HHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 713 AQDLRVPVS-NGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 713 ~~D~~vp~~-~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
++|..+|++ ....+.+.+ .+++++++++++|.+.. +....+.+.+.+||++++
T Consensus 227 ~~D~~vp~~~~~~~l~~~~----~~~~~~~i~gagH~~~~-e~p~~v~~~I~~FL~~~l 280 (456)
T 3vdx_A 227 TGDRTLPIENTARVFHKAL----PSAEYVEVEGAPHGLLW-THAEEVNTALLAFLAKAL 280 (456)
T ss_dssp TTCSSSCGGGTHHHHHHHC----TTSEEEEETTCCSCTTT-TTHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHC----CCceEEEeCCCCCcchh-hCHHHHHHHHHHHHHHhh
Confidence 999999988 444444433 34799999999998765 556688999999999875
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=170.13 Aligned_cols=218 Identities=16% Similarity=0.098 Sum_probs=137.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... .......++..+.+..+++.-.. .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~----~~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAA---SGIDPRP----IQAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSSC----GGGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCC---CcCCCCC----CCccccHHHhHHHHHHHHHHhcc-cCc
Confidence 889999997765 4467888999999999999999999 4443211 01113455555555555554322 378
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh------cC-CCCCcchhhhhc---cC-----------C-C
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------GT-TDIPDWCYVESY---GS-----------K-G 675 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~------~~-~~~~~~~~~~~~---~~-----------~-~ 675 (771)
+.|+|||+||.+++.++.++|++++++|+.+|........ .. .....|...... +. . .
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKFM 154 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHHH
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHHH
Confidence 9999999999999999999999999999988854221000 00 000011000000 00 0 0
Q ss_pred CccCCCCCChhhHHHHh--------------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 676 KDSFTESPSVEDLTRFH--------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~--------------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
...+......+....+. ...........++|+|+++|++|..+|++.++.+.+.+.. .++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 230 (258)
T 3dqz_A 155 KARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKFSEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNV----SKVYE 230 (258)
T ss_dssp HHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCC----SCEEE
T ss_pred HHHhhccCCHHHHHHHHHhccCCchhhhhhhccccccccccccCCEEEEECCCCeeeCHHHHHHHHHhCCc----ccEEE
Confidence 00000011111111110 0111222223368999999999999999988888777643 58889
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
++++||.... +....+.+.+.+|+++||
T Consensus 231 ~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 231 IDGGDHMVML-SKPQKLFDSLSAIATDYM 258 (258)
T ss_dssp ETTCCSCHHH-HSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCchhh-cChHHHHHHHHHHHHHhC
Confidence 9999998664 445688899999999885
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-17 Score=162.66 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=134.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH--CCcEEEEECCCCCCC------CChhhhhcCCCCc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSLG------FGEEALQSLPGKV 592 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~--~G~~Vv~~d~rG~~~------~g~~~~~~~~~~~ 592 (771)
+...++.|+ .+.+++||++||.+.+. ..+...+..|.. .++.+++|+-+..+. .+..|........
T Consensus 25 l~y~ii~P~----~~~~~~VI~LHG~G~~~--~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~~~ 98 (246)
T 4f21_A 25 MNYELMEPA----KQARFCVIWLHGLGADG--HDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSLDA 98 (246)
T ss_dssp CCEEEECCS----SCCCEEEEEEEC--CCC--CCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC--
T ss_pred cCceEeCCC----CcCCeEEEEEcCCCCCH--HHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccccc
Confidence 556688885 23467999999966542 344444444432 368888887432110 0112211110000
Q ss_pred -------cccchhhHHHHHHHHHH---cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC
Q 004141 593 -------GSQDVNDVLTAIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 593 -------~~~~~~D~~~~i~~l~~---~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~ 662 (771)
....+....+.++.+++ +..++++||+++|+|+||.+++.++.++|+.++++++.++........
T Consensus 99 ~~~~~~~d~~~i~~~~~~i~~li~~~~~~gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~----- 173 (246)
T 4f21_A 99 NSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNF----- 173 (246)
T ss_dssp -CGGGGSCCC-CHHHHHHHHHHHHHHHHC-CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHH-----
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHcCCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccccc-----
Confidence 00112233333333332 235899999999999999999999999999999999988864211100
Q ss_pred CcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 663 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
.. ... ....++|+|++||+.|++||++.++++++.|++.|.++++..|
T Consensus 174 ---------~~-------------------~~~----~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y 221 (246)
T 4f21_A 174 ---------KG-------------------KIT----SINKGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHY 221 (246)
T ss_dssp ---------ST-------------------TCC----GGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred ---------cc-------------------ccc----ccccCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 00 000 0113579999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 743 PNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++.||.+. .+.+..+.+||++.|+
T Consensus 222 ~g~gH~i~-----~~~l~~~~~fL~k~l~ 245 (246)
T 4f21_A 222 VGMQHSVC-----MEEIKDISNFIAKTFK 245 (246)
T ss_dssp SSCCSSCC-----HHHHHHHHHHHHHHTT
T ss_pred CCCCCccC-----HHHHHHHHHHHHHHhC
Confidence 99999875 4567899999999886
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-18 Score=172.28 Aligned_cols=227 Identities=15% Similarity=0.251 Sum_probs=141.6
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.++++...-+ +..|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+... . .
T Consensus 10 ~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG---~G~S~~~--~---~ 72 (266)
T 3om8_A 10 ATSDGASLAYRLDGA------AEKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARG---HGASSVP--P---G 72 (266)
T ss_dssp ECTTSCEEEEEEESC------TTSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTT---STTSCCC--C---S
T ss_pred eccCCcEEEEEecCC------CCCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCC---CCCCCCC--C---C
Confidence 345688887766543 235889999997655 4467778888865 79999999999 5554321 1 1
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh----------hhcCCCCC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------MVGTTDIP 663 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----------~~~~~~~~ 663 (771)
...++++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++...... ........
T Consensus 73 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (266)
T 3om8_A 73 PYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDMS 150 (266)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSSSH
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccccHH
Confidence 23355555555555554 2346899999999999999999999999999999876432100 00000000
Q ss_pred cch--hhhhccCCCCccCCCCCC-hhhH----------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHH
Q 004141 664 DWC--YVESYGSKGKDSFTESPS-VEDL----------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 664 ~~~--~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~ 724 (771)
... ....+... ......+. .+.. ..+...+....+.++++|+|+++|++|..+|++.++
T Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~ 228 (266)
T 3om8_A 151 ETAAGFLGNWFPP--ALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGE 228 (266)
T ss_dssp HHHHHHHHHHSCH--HHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHHHHhcCh--hhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCHHHHH
Confidence 000 00000000 00000000 0000 011112223456789999999999999999999998
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.+.+.+.. .++++++ +||... .+....+.+.+.+||.
T Consensus 229 ~l~~~ip~----a~~~~i~-~gH~~~-~e~p~~~~~~i~~Fl~ 265 (266)
T 3om8_A 229 LIAASIAG----ARLVTLP-AVHLSN-VEFPQAFEGAVLSFLG 265 (266)
T ss_dssp HHHHHSTT----CEEEEES-CCSCHH-HHCHHHHHHHHHHHHT
T ss_pred HHHHhCCC----CEEEEeC-CCCCcc-ccCHHHHHHHHHHHhc
Confidence 88887764 6888887 799765 3444577788888874
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=188.27 Aligned_cols=242 Identities=13% Similarity=0.097 Sum_probs=157.9
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----------------cc----hHHHHHHHHCCcEEE
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------------SY----SKSLAFLSSVGYSLL 570 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----------------~~----~~~~~~la~~G~~Vv 570 (771)
.+...||.+|.+.+|.|++ .++.|+||+.||.+...... .+ ...++.|+++||+|+
T Consensus 45 ~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~Gy~vv 121 (560)
T 3iii_A 45 TVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVV 121 (560)
T ss_dssp EEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGGGTCEEE
T ss_pred EEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHHhCCCEEE
Confidence 4556689999999999983 57899999999854432100 00 013678999999999
Q ss_pred EECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 571 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 571 ~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
++|+||.++++..+. .++..+.+|+.++++|+.+++.++ .||+++|+|+||++++.+|+.+|+.++|+|+.+|+
T Consensus 122 ~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~aiv~~~~~ 195 (560)
T 3iii_A 122 KVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195 (560)
T ss_dssp EEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEEEEESCC
T ss_pred EEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 999999877765432 334467899999999999887776 89999999999999999999999999999999999
Q ss_pred cchhhh-hcCCCCCcchhh--------hhccCC-CCc----cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC
Q 004141 651 CNLALM-VGTTDIPDWCYV--------ESYGSK-GKD----SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 651 ~~~~~~-~~~~~~~~~~~~--------~~~~~~-~~~----~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~ 716 (771)
.++..- ..........+. ..+... ... .+...+..+ ..+...++ .+.+|++|+|+++|-.|.
T Consensus 196 ~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d--~~W~~~~~--~~~~I~vPvl~v~Gw~D~ 271 (560)
T 3iii_A 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD--DFWKQRQV--PLSQIKTPLLTCASWSTQ 271 (560)
T ss_dssp CBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC--HHHHTTBC--CGGGCCSCEEEEEEGGGT
T ss_pred ccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc--hHhhccCC--chhhCCCCEEEeCCcCCC
Confidence 886531 110001100000 000000 000 000111111 12333444 578999999999999997
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.+....+.+.+++++..+ ..+++. +.+|.... -..+..+..++||++|||
T Consensus 272 ~~~~~g~l~~y~~l~~~~--k~l~ih-~~~~~~~~--~~~~~~~~~~~wfD~~Lk 321 (560)
T 3iii_A 272 GLHNRGSFEGFKQAASEE--KWLYVH-GRKEWESY--YARENLERQKSFFDFYLK 321 (560)
T ss_dssp TTTHHHHHHHHHHCCCSS--EEEEEE-SSCHHHHH--HSHHHHHHHHHHHHHHTS
T ss_pred cccchhHHHHHHhccccC--cEEEEC-CCCCcCcc--cChhHHHHHHHHHHHHhC
Confidence 555566667777665432 233333 22332100 012456789999999996
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=174.78 Aligned_cols=227 Identities=15% Similarity=0.174 Sum_probs=143.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++..... +.|+||++||.+.+ ...|...+..|.++||.|+++|+|| +|.+... .....
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~S~~~-----~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIG---MGDSAKP-----DIEYR 78 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCC---CCCCCCC-----CcccC
Confidence 57777655442 24789999997765 3457777888788999999999999 4444321 11234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh--------------hcCCCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--------------VGTTDI 662 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~--------------~~~~~~ 662 (771)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|....... ......
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDLRT 156 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHHhc
Confidence 56666666655554 23478999999999999999999999999999998875432100 000000
Q ss_pred C---------cchhhhhccCCCCccCCCCCChhhHHHHh-----------------hc--------------CcccccCC
Q 004141 663 P---------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISK 702 (771)
Q Consensus 663 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~ 702 (771)
+ ...+...+.... ........+....+. .. +....+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3u1t_A 157 ADVGEKMVLDGNFFVETILPEM--GVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA 234 (309)
T ss_dssp TTHHHHHHTTTCHHHHTHHHHT--SCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccccceehhhhcccc--cccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc
Confidence 0 000000000000 000000011111110 00 11123567
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++|+|+++|++|..+|++.++.+.+.+.. .++++++++||.+.. +...++.+.|.+||++..
T Consensus 235 i~~P~l~i~G~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~~~~ 297 (309)
T 3u1t_A 235 SPIPKLLFHAEPGALAPKPVVDYLSENVPN----LEVRFVGAGTHFLQE-DHPHLIGQGIADWLRRNK 297 (309)
T ss_dssp CCSCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHH-HCHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEecCCCCCCCHHHHHHHHhhCCC----CEEEEecCCcccchh-hCHHHHHHHHHHHHHhcc
Confidence 899999999999999999888888777654 677778999997653 345678889999998764
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=169.06 Aligned_cols=233 Identities=15% Similarity=0.115 Sum_probs=144.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.|.++..+ |.|++ .|+||++||++.......|.. ..+.+++.||.|+++|++++..+.. +..... +
T Consensus 21 ~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~~-~~~~~~---~ 89 (280)
T 1r88_A 21 MGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTN-WEQDGS---K 89 (280)
T ss_dssp TTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSB-CSSCTT---C
T ss_pred cCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccCC-CCCCCC---C
Confidence 46778877 77763 289999999853222334433 3566778899999999987543311 110000 1
Q ss_pred ccchhh-H-HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 594 SQDVND-V-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 594 ~~~~~D-~-~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
...+ + .+.+.++.++..+++++++|+|+||||++|+.++.++|++|+++++.+|..+.........+... . ...
T Consensus 90 --~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~-~-~~~ 165 (280)
T 1r88_A 90 --QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAG-M-QQF 165 (280)
T ss_dssp --BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHHH-H-HHH
T ss_pred --cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccchhhHHHH-h-hhc
Confidence 1222 1 13334444434477789999999999999999999999999999999998764321000000000 0 000
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEe----eCCCCc-------cCcHHHHHHHHHHHhCC-CC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLL----GAQDLR-------VPVSNGLQYARALREKG-VE 736 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~lii~----G~~D~~-------vp~~~~~~~~~~l~~~g-~~ 736 (771)
+......+.+.+ ....+...+|...+.++ .+|+++.+ |+.|.. ++.++++++++.|++.| ++
T Consensus 166 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~~g~~~ 242 (280)
T 1r88_A 166 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 242 (280)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cccchhhhcCCC---chhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHHCCCcc
Confidence 000000000000 11234455666555544 58999999 999984 68899999999999999 99
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++.++++++|.+. .....+...+.||.+-|
T Consensus 243 ~~~~~~~~g~H~~~---~w~~~l~~~l~~~~~~~ 273 (280)
T 1r88_A 243 GHFDFPASGDNGWG---SWAPQLGAMSGDIVGAI 273 (280)
T ss_dssp EEEECCSSCCSSHH---HHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCcChh---HHHHHHHHHHHHHHHHH
Confidence 99999888899753 12234455666665544
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=178.96 Aligned_cols=246 Identities=13% Similarity=0.110 Sum_probs=148.1
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------C-cchHHH---HHHHHCCcEEEEECCCCCCC-----
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------S-SYSKSL---AFLSSVGYSLLIVNYRGSLG----- 579 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~----------~-~~~~~~---~~la~~G~~Vv~~d~rG~~~----- 579 (771)
.++++..+-+. ...+.|+||++||.+.+... . .|...+ ..|...||.|+++|+||.+.
T Consensus 27 ~~i~y~~~g~~---~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~ 103 (377)
T 3i1i_A 27 VQMGYETYGTL---NRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPH 103 (377)
T ss_dssp EEEEEEEESCC---CTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTT
T ss_pred eeEEEEeeccc---CCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCC
Confidence 44555555433 23456899999997765332 0 133344 46667899999999997532
Q ss_pred ---CChhhhhcCCCC-----ccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEe-cCC
Q 004141 580 ---FGEEALQSLPGK-----VGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAA-RNP 649 (771)
Q Consensus 580 ---~g~~~~~~~~~~-----~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~-~~p 649 (771)
+|.+......+. +....++++.+.+..+++. ++.+++. |+||||||.+++.+|.++|++++++|+ .++
T Consensus 104 ~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (377)
T 3i1i_A 104 VITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITN 181 (377)
T ss_dssp CCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCC
T ss_pred cccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcC
Confidence 111111000000 1133567777777777766 3456786 999999999999999999999999999 665
Q ss_pred ccchhhh-hc--------CCCCCcch-----------------------------hhhhccCCCCccC------------
Q 004141 650 LCNLALM-VG--------TTDIPDWC-----------------------------YVESYGSKGKDSF------------ 679 (771)
Q Consensus 650 ~~~~~~~-~~--------~~~~~~~~-----------------------------~~~~~~~~~~~~~------------ 679 (771)
....... .. ....+.|. +...+........
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (377)
T 3i1i_A 182 PQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPYEKVSSLTSFE 261 (377)
T ss_dssp SBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGGTCTTCCCHHH
T ss_pred CCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhccccccccccchhHHH
Confidence 5431000 00 00000000 0000100000000
Q ss_pred ----------CCCCChhhH----HHHhhcC-------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 680 ----------TESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 680 ----------~~~~~~~~~----~~~~~~s-------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
......... ..+...+ ....+.++++|+|+++|++|..+|++.++.+++.++..+.+++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~~~g~~~~ 341 (377)
T 3i1i_A 262 KEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNVEANVLMIPCKQDLLQPSRYNYKMVDLLQKQGKYAE 341 (377)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTCCSEEEEECBTTCSSSCTHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhCCCCEEEEecCCccccCHHHHHHHHHHHHhcCCCce
Confidence 000000000 0000011 1234578899999999999999999999999999988777799
Q ss_pred EEEeCC-CCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 739 VIVFPN-DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 739 ~~~~~~-~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
++++++ +||...... ..++.+.|.+||++++
T Consensus 342 ~~~i~~~~gH~~~~e~-p~~~~~~i~~fl~~~~ 373 (377)
T 3i1i_A 342 VYEIESINGHMAGVFD-IHLFEKKVYEFLNRKV 373 (377)
T ss_dssp ECCBCCTTGGGHHHHC-GGGTHHHHHHHHHSCC
T ss_pred EEEcCCCCCCcchhcC-HHHHHHHHHHHHHhhh
Confidence 999998 999765433 3477889999998765
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-18 Score=176.85 Aligned_cols=233 Identities=16% Similarity=0.160 Sum_probs=136.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++..+.+ +.+.|.||++||+++.. ..|...+..+++.||.|+++|+|| +|.+.... .....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~----~~~~~ 78 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFG---CGRSEEPD----QSKFT 78 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTT---STTSCCCC----GGGCS
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcc--hhHHHHHHHHHhcCcEEEEecCCC---CccCCCCC----CCccc
Confidence 466666554432 11237899999976542 233333445567899999999999 55443211 11123
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-----CCCCcc--h---
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDW--C--- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-----~~~~~~--~--- 666 (771)
++++.+.+..+++.- .+.+++.|+||||||.+++.+|.++|++++++|+.+|.......... ...+.. .
T Consensus 79 ~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (293)
T 1mtz_A 79 IDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYRDAIK 157 (293)
T ss_dssp HHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccChHHHHHHHHHHHHhcCHHHHHHHH
Confidence 444444444444431 02358999999999999999999999999999999987653211000 000000 0
Q ss_pred ------------hh---hhccCCCCccCCCCCCh--hhHH------HH---------------hhcCcccccCCCCCcEE
Q 004141 667 ------------YV---ESYGSKGKDSFTESPSV--EDLT------RF---------------HSKSPISHISKVKTPTI 708 (771)
Q Consensus 667 ------------~~---~~~~~~~~~~~~~~~~~--~~~~------~~---------------~~~sp~~~~~~i~~P~l 708 (771)
+. ..+...........+.. .... .+ ...+....+.++++|+|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l 237 (293)
T 1mtz_A 158 KYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPTL 237 (293)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGCCSCEE
T ss_pred HhhccCCcChHHHHHHHHHHHHhhcccccCchHHHHHhHhhhccchhhhhccCcceecccccccCCChhhhhccCCCCEE
Confidence 00 00000000000001100 0000 00 01112234567899999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++|++| .+++..++.+.+.+. +.++++++++||..... ....+.+.+.+||+++|
T Consensus 238 ii~G~~D-~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~~~l 293 (293)
T 1mtz_A 238 ITVGEYD-EVTPNVARVIHEKIA----GSELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 293 (293)
T ss_dssp EEEETTC-SSCHHHHHHHHHHST----TCEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred EEeeCCC-CCCHHHHHHHHHhCC----CceEEEeCCCCCCcccc-CHHHHHHHHHHHHHhcC
Confidence 9999999 677777777766653 37899999999986543 45678889999998764
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=190.33 Aligned_cols=243 Identities=14% Similarity=0.116 Sum_probs=161.6
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+...||.+|.+.+|.|+ ..++.|+||++||.+..... ..|...+ +.|+++||+|+.+|+||+++++..+..
T Consensus 14 i~~~DG~~L~~~~~~P~---~~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~~---- 86 (587)
T 3i2k_A 14 VPMRDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFVP---- 86 (587)
T ss_dssp EECTTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCCT----
T ss_pred EECCCCCEEEEEEEECC---CCCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCcccc----
Confidence 44567899999999997 34578999999985433110 0121123 789999999999999998776554321
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc-cchhhhh-cCCCCC-----
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIP----- 663 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~-~~~~~~~-~~~~~~----- 663 (771)
...+.+|+.++++|+.+++..+ .+|+++|+||||++++.++.++|+.++++|+.++. .++..-. ......
T Consensus 87 --~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG~~~~~~~ 163 (587)
T 3i2k_A 87 --HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEAL 163 (587)
T ss_dssp --TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHH
T ss_pred --ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCCccccchH
Confidence 2346899999999999886555 79999999999999999999989999999999988 6543210 000010
Q ss_pred -cchhhh------------------------------hc-cCCCC-------------ccC-CCCCChhhHHHHhhcCcc
Q 004141 664 -DWCYVE------------------------------SY-GSKGK-------------DSF-TESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 664 -~~~~~~------------------------------~~-~~~~~-------------~~~-~~~~~~~~~~~~~~~sp~ 697 (771)
.|.... .+ ..... ... ...+ .....|...++.
T Consensus 164 ~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~yw~~~s~~ 241 (587)
T 3i2k_A 164 LGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP--DNDESWQSISLF 241 (587)
T ss_dssp HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCC--SCCHHHHTTCCH
T ss_pred HHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCC--CCChHHhcCChh
Confidence 111100 00 00000 000 1111 112335566777
Q ss_pred cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC---------CCChH---HHHHHHHHH
Q 004141 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER---------PQSDF---ESFLNIGLW 765 (771)
Q Consensus 698 ~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~---------~~~~~---~~~~~i~~f 765 (771)
..+.+|++|+|+++|..|..+ ..+.+++++|+..+. .++++-|. .|+... +.... +..+.+++|
T Consensus 242 ~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~~~~-~~L~iGPw-~H~~~~~~~g~~~~g~~~~~~~~~~~~~~~~w 317 (587)
T 3i2k_A 242 ERLGGLATPALITAGWYDGFV--GESLRTFVAVKDNAD-ARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAF 317 (587)
T ss_dssp HHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTTTSC-EEEEEEEE-ETTBCSSEETTEECCGGGSCCHHHHHHHHHHH
T ss_pred hhhccCCCCEEEEccCCCccc--hHHHHHHHHHhhcCC-CEEEECCc-cccCccccCCCcccCCccccccchhhHHHHHH
Confidence 788999999999999999886 456788999987664 35666554 465311 11111 334889999
Q ss_pred HHHhhC
Q 004141 766 FKKYCK 771 (771)
Q Consensus 766 l~~~L~ 771 (771)
|++|||
T Consensus 318 FD~~Lk 323 (587)
T 3i2k_A 318 FDRHLR 323 (587)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999996
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=173.54 Aligned_cols=226 Identities=17% Similarity=0.153 Sum_probs=139.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
++.+++++...+ +..|+||++||++.. ...|...+..|++ ||.|+++|+||.+ |.+... .....
T Consensus 53 ~~~~~~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-g~~vi~~D~~G~g--G~s~~~-----~~~~~ 116 (306)
T 2r11_A 53 RFGQTHVIASGP------EDAPPLVLLHGALFS--STMWYPNIADWSS-KYRTYAVDIIGDK--NKSIPE-----NVSGT 116 (306)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTTC--GGGGTTTHHHHHH-HSEEEEECCTTSS--SSCEEC-----SCCCC
T ss_pred CCceEEEEeeCC------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCCCC--CCCCCC-----CCCCC
Confidence 455676555432 245889999998765 3357777788877 9999999999952 322211 11234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc------CCCC-Ccc--hh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------TTDI-PDW--CY 667 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~------~~~~-~~~--~~ 667 (771)
.+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... .... ..+ .+
T Consensus 117 ~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (306)
T 2r11_A 117 RTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALGLTASNGVETF 194 (306)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHTTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhHHHHHHHHHHH
Confidence 56666666666655 3457899999999999999999999999999999998765311000 0000 000 00
Q ss_pred hhhccCCCCccCCCCCC--hhh-H---------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 668 VESYGSKGKDSFTESPS--VED-L---------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~--~~~-~---------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
...+.... ....+. ... . ...........+.++++|+|+++|++|..+|++.+.++++.
T Consensus 195 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~ 271 (306)
T 2r11_A 195 LNWMMNDQ---NVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHSALHRASS 271 (306)
T ss_dssp HHHHTTTC---CCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHHHHHHHHHH
T ss_pred HHHhhCCc---cccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHHHHHHHHHH
Confidence 00000000 000000 000 0 00001122234667899999999999999998887766554
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+. .++++++++++||.+... ...++.+.|.+||+
T Consensus 272 ~~---~~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 305 (306)
T 2r11_A 272 FV---PDIEAEVIKNAGHVLSME-QPTYVNERVMRFFN 305 (306)
T ss_dssp HS---TTCEEEEETTCCTTHHHH-SHHHHHHHHHHHHC
T ss_pred HC---CCCEEEEeCCCCCCCccc-CHHHHHHHHHHHHh
Confidence 32 347999999999976533 34577788888875
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.9e-18 Score=171.29 Aligned_cols=228 Identities=15% Similarity=0.195 Sum_probs=141.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++..+.|. +.+.|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~g~~l~y~~~g~~----~~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G---~G~S~~~~-----~~~~ 74 (266)
T 2xua_A 10 NGTELHYRIDGER----HGNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRG---HGHSEAPK-----GPYT 74 (266)
T ss_dssp SSSEEEEEEESCS----SSCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTT---STTSCCCS-----SCCC
T ss_pred CCEEEEEEEcCCc----cCCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCC---CCCCCCCC-----CCCC
Confidence 5777887766442 1125889999996654 3467777888865 59999999999 55543211 1233
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh---hhc----C--CCCCcc--
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MVG----T--TDIPDW-- 665 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~---~~~----~--~~~~~~-- 665 (771)
++++.+.+..+++. +..+++.|+||||||.+++.+|.++|++++++|+.++...... +.. . ......
T Consensus 75 ~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
T 2xua_A 75 IEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALAD 152 (266)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHHH
Confidence 55555555555554 2346899999999999999999999999999999887542100 000 0 000000
Q ss_pred hhhhhccCC-CC-------c----cCCCCCChhh----HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 666 CYVESYGSK-GK-------D----SFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 666 ~~~~~~~~~-~~-------~----~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
.....+... .. . .+.. ..... ...+...+....+.++++|+|+++|++|..+|++.++.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~ 231 (266)
T 2xua_A 153 AVLPRWFTADYMEREPVVLAMIRDVFVH-TDKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQA 231 (266)
T ss_dssp HHHHHHSCHHHHHHCHHHHHHHHHHHHT-SCHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred HHHHHHcCcccccCCHHHHHHHHHHHhh-CCHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHHHHh
Confidence 000000000 00 0 0000 00000 011112233445678899999999999999999888888776
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.. .++++++ +||.+.... ..++.+.+.+||++
T Consensus 232 ~~~----~~~~~~~-~gH~~~~e~-p~~~~~~i~~fl~~ 264 (266)
T 2xua_A 232 IAG----ARYVELD-ASHISNIER-ADAFTKTVVDFLTE 264 (266)
T ss_dssp STT----CEEEEES-CCSSHHHHT-HHHHHHHHHHHHTC
T ss_pred CCC----CEEEEec-CCCCchhcC-HHHHHHHHHHHHHh
Confidence 654 6889999 999865433 45788888889863
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=171.15 Aligned_cols=216 Identities=18% Similarity=0.245 Sum_probs=133.1
Q ss_pred CcEEEEEcCCC-CCCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 537 DPLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~-~~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+||++||.+ +......|...+ ..|++. |.|+++|+|| +|.+.... . ....++++.+.+..+++. ++
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~---~-~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPG---FNKSDAVV---M-DEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTT---STTSCCCC---C-SSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCC---CCCCCCCC---C-cCcCHHHHHHHHHHHHHH--hC
Confidence 36899999964 222233466667 777665 9999999999 55543211 1 123456666655555555 24
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC------------CCcchhh----hhccCCCCcc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYV----ESYGSKGKDS 678 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~------------~~~~~~~----~~~~~~~~~~ 678 (771)
.+++.|+||||||.+++.+|.++|++++++|+.+|............ .+.+... ..+... ...
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 181 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYD-QSL 181 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSC-GGG
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcC-Ccc
Confidence 57899999999999999999999999999999887542100000000 0000000 000000 000
Q ss_pred CCC----------CCChhhHHHHh---------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 679 FTE----------SPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 679 ~~~----------~~~~~~~~~~~---------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
... .........+. .......+.++++|+|+++|++|..+|++.++.+.+.+. ..++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~----~~~~ 257 (286)
T 2puj_A 182 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARL 257 (286)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CCHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCC----CCeE
Confidence 000 00000000000 112234567889999999999999999998888877664 3799
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 740 IVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++||..... ...++.+.+.+||++
T Consensus 258 ~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 285 (286)
T 2puj_A 258 HVFSKCGAWAQWE-HADEFNRLVIDFLRH 285 (286)
T ss_dssp EEESSCCSCHHHH-THHHHHHHHHHHHHH
T ss_pred EEeCCCCCCcccc-CHHHHHHHHHHHHhc
Confidence 9999999976533 345788889999875
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=171.85 Aligned_cols=217 Identities=14% Similarity=0.138 Sum_probs=132.1
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|+||++||.+.. ...|...+..|++ .||.|+++|+|| +|.+..... ...+++.+.+..+++.. .+.
T Consensus 21 ~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G---~G~s~~~~~------~~~~~~~~~~~~~l~~~-~~~ 88 (272)
T 3fsg_A 21 GTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPG---MGNSDPISP------STSDNVLETLIEAIEEI-IGA 88 (272)
T ss_dssp SSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTT---STTCCCCSS------CSHHHHHHHHHHHHHHH-HTT
T ss_pred CCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCC---CCCCCCCCC------CCHHHHHHHHHHHHHHH-hCC
Confidence 4789999997654 3356666667766 799999999999 444422111 23444443333333320 134
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC----ccC---CCCCChhhH
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK----DSF---TESPSVEDL 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~ 688 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|.....................+..... ..+ .........
T Consensus 89 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (272)
T 3fsg_A 89 RRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQAW 168 (272)
T ss_dssp CCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHHH
T ss_pred CcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCchh
Confidence 7899999999999999999999999999999988753221111100000000000000000 000 000000000
Q ss_pred HH-------------------Hhh-----cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 689 TR-------------------FHS-----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 689 ~~-------------------~~~-----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.. +.. ..+...+.++++|+|+++|++|..+|++..+.+.+.+. +++++++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 244 (272)
T 3fsg_A 169 HDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNE----NGEIVLLNR 244 (272)
T ss_dssp HHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCT----TEEEEEESS
T ss_pred HHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcC----CCeEEEecC
Confidence 00 000 00111347789999999999999999998888776653 489999999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+||.+... ...++.+.+.+||++..
T Consensus 245 ~gH~~~~~-~~~~~~~~i~~fl~~~~ 269 (272)
T 3fsg_A 245 TGHNLMID-QREAVGFHFDLFLDELN 269 (272)
T ss_dssp CCSSHHHH-THHHHHHHHHHHHHHHH
T ss_pred CCCCchhc-CHHHHHHHHHHHHHHhh
Confidence 99986643 35678889999998753
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=163.35 Aligned_cols=224 Identities=16% Similarity=0.223 Sum_probs=135.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++.....+ ..|.||++||.+.+. ...|...+..|+++||.|+++|+|| +|.+... ...+....
T Consensus 10 ~g~~l~~~~~g~-------~~~~vvllHG~~~~~-~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~--~~~~~~~~ 76 (254)
T 2ocg_A 10 NGVQLHYQQTGE-------GDHAVLLLPGMLGSG-ETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPP--DRDFPADF 76 (254)
T ss_dssp TTEEEEEEEEEC-------CSEEEEEECCTTCCH-HHHCHHHHHHSCTTTEEEEEECCTT---STTCCSS--CCCCCTTH
T ss_pred CCEEEEEEEecC-------CCCeEEEECCCCCCC-ccchHHHHHHHhhCCCeEEEECCCC---CCCCCCC--CCCCChHH
Confidence 466676544421 236799999965431 2347778888888899999999999 4544211 11111111
Q ss_pred h-hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----hhcCCCCCcchhh--
Q 004141 597 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTDIPDWCYV-- 668 (771)
Q Consensus 597 ~-~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-----~~~~~~~~~~~~~-- 668 (771)
. +++.++++.+.+. +.+++.|+||||||.+++.++.++|++++++|+.++...... +........|...
T Consensus 77 ~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T 2ocg_A 77 FERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR 153 (254)
T ss_dssp HHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHhH
Confidence 2 2333444444333 346899999999999999999999999999999887532110 0011111111000
Q ss_pred ----hhccCCCCccCCCCCChhh----HHHHhh----cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 669 ----ESYGSKGKDSFTESPSVED----LTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 669 ----~~~~~~~~~~~~~~~~~~~----~~~~~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
..++.. .+. ..+.. ...+.. ......+.++++|+|+++|++|..+|++.++.+.+.+..
T Consensus 154 ~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~---- 224 (254)
T 2ocg_A 154 KPLEALYGYD---YFA--RTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKG---- 224 (254)
T ss_dssp HHHHHHHCHH---HHH--HHHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----
T ss_pred HHHHHHhcch---hhH--HHHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCCC----
Confidence 000000 000 00000 000000 012335678999999999999999999988888776643
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.++++++++||.+.. +....+.+.+.+||
T Consensus 225 ~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl 253 (254)
T 2ocg_A 225 SRLHLMPEGKHNLHL-RFADEFNKLAEDFL 253 (254)
T ss_dssp CEEEEETTCCTTHHH-HTHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCchhh-hCHHHHHHHHHHHh
Confidence 688999999998653 33456777787776
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=169.81 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=136.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.-+|.++++..+.|+ +.|+||++||++.. ...|...+..|+++||.|+++|+||. |.+... .....
T Consensus 10 ~~~g~~l~~~~~g~~------~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G~---G~s~~~---~~~~~ 75 (286)
T 3qit_A 10 EFGGNQICLCSWGSP------EHPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFGH---GRSSHL---EMVTS 75 (286)
T ss_dssp EETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTTS---TTSCCC---SSGGG
T ss_pred ecCCceEEEeecCCC------CCCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCCC---CCCCCC---CCCCC
Confidence 446788888777543 35889999998765 44678889999999999999999994 443211 11123
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh---------------c-
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---------------G- 658 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~---------------~- 658 (771)
...+++.+.+..+++. ++.+++.++|||+||.+++.++.++|++++++|+.+|........ .
T Consensus 76 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (286)
T 3qit_A 76 YSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSS 153 (286)
T ss_dssp CSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCC---CCHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCCccccchhhhHHHHHHHHHHhc
Confidence 3466666666666665 345789999999999999999999999999999999875432110 0
Q ss_pred CCC---CCcchhh-hhccCCCCccCCCCCChhhHHHH---------------------------------hhcCcccccC
Q 004141 659 TTD---IPDWCYV-ESYGSKGKDSFTESPSVEDLTRF---------------------------------HSKSPISHIS 701 (771)
Q Consensus 659 ~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~sp~~~~~ 701 (771)
... ....... .... ..... ........+ ...+....+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T 3qit_A 154 TPQHPIFPDVATAASRLR----QAIPS-LSEEFSYILAQRITQPNQGGVRWSWDAIIRTRSILGLNNLPGGRSQYLEMLK 228 (286)
T ss_dssp CCCCCCBSSHHHHHHHHH----HHSTT-SCHHHHHHHHHHTEEEETTEEEECSCGGGGGHHHHTTTSCTTHHHHHHHHHH
T ss_pred cccccccccHHHHHHHhh----cCCcc-cCHHHHHHHhhccccccccceeeeechhhhccccccccccccchhHHHHHHh
Confidence 000 0000000 0000 00000 000000000 1111223356
Q ss_pred CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC
Q 004141 702 KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 702 ~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~ 750 (771)
++++|+|+++|++|..+|++....+.+.+.. ++++++++ ||.+.
T Consensus 229 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~g-gH~~~ 272 (286)
T 3qit_A 229 SIQVPTTLVYGDSSKLNRPEDLQQQKMTMTQ----AKRVFLSG-GHNLH 272 (286)
T ss_dssp HCCSCEEEEEETTCCSSCHHHHHHHHHHSTT----SEEEEESS-SSCHH
T ss_pred ccCCCeEEEEeCCCcccCHHHHHHHHHHCCC----CeEEEeeC-CchHh
Confidence 7899999999999999999888887776643 68999999 99765
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=172.67 Aligned_cols=237 Identities=17% Similarity=0.247 Sum_probs=138.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
-+|.++++....|.. ...+.+.||++||++.+. ..|...+..|++ .||.|+++|+|| +|.+.... ......
T Consensus 35 ~~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~~--~~w~~~~~~l~~~~~~~Via~D~rG---~G~S~~~~-~~~~~~ 106 (330)
T 3nwo_A 35 FGDHETWVQVTTPEN--AQPHALPLIVLHGGPGMA--HNYVANIAALADETGRTVIHYDQVG---CGNSTHLP-DAPADF 106 (330)
T ss_dssp ETTEEEEEEEECCSS--CCTTCCCEEEECCTTTCC--SGGGGGGGGHHHHHTCCEEEECCTT---STTSCCCT-TSCGGG
T ss_pred ecCcEEEEEEecCcc--CCCCCCcEEEECCCCCCc--hhHHHHHHHhccccCcEEEEECCCC---CCCCCCCC-CCcccc
Confidence 357888877776531 111123588999977653 356666667765 699999999999 55442100 001111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----------------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------------- 657 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~----------------- 657 (771)
...+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++........
T Consensus 107 ~~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (330)
T 3nwo_A 107 WTPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPASMRLWSEAAGDLRAQLPAETRAA 184 (330)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcchHHHHHHHHHHHHhcCHHHHHH
Confidence 2233443333333333 234689999999999999999999999999999888754321100
Q ss_pred -------cCCCCCcchh-hhhccCCCCccCCCCCChhhHHH-------------------------HhhcCcccccCCCC
Q 004141 658 -------GTTDIPDWCY-VESYGSKGKDSFTESPSVEDLTR-------------------------FHSKSPISHISKVK 704 (771)
Q Consensus 658 -------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~sp~~~~~~i~ 704 (771)
.....+.+.. ...+...........+ ...... +...+....+.+|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 263 (330)
T 3nwo_A 185 LDRHEAAGTITHPDYLQAAAEFYRRHVCRVVPTP-QDFADSVAQMEAEPTVYHTMNGPNEFHVVGTLGDWSVIDRLPDVT 263 (330)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHTCCSSSCC-HHHHHHHHHHHHSCHHHHHHTCSCSSSCCSGGGGCBCGGGGGGCC
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHhhccccCCC-HHHHHHHHhhccchhhhhcccCchhhhhhccccCCchhhhcccCC
Confidence 0000000000 0000000000000001 000000 01112234567889
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 705 ~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+|+|+++|++|..+| .....+.+.+. ..+++++|++||....+ ...++.+.+.+||+++
T Consensus 264 ~P~Lvi~G~~D~~~p-~~~~~~~~~ip----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~FL~~~ 322 (330)
T 3nwo_A 264 APVLVIAGEHDEATP-KTWQPFVDHIP----DVRSHVFPGTSHCTHLE-KPEEFRAVVAQFLHQH 322 (330)
T ss_dssp SCEEEEEETTCSSCH-HHHHHHHHHCS----SEEEEEETTCCTTHHHH-SHHHHHHHHHHHHHHH
T ss_pred CCeEEEeeCCCccCh-HHHHHHHHhCC----CCcEEEeCCCCCchhhc-CHHHHHHHHHHHHHhc
Confidence 999999999999876 45555555443 48999999999976644 4557888999999875
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-18 Score=173.00 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=133.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||++... ..|...+..|++ ||.|+++|+|| +|.+.. .........+++.+.+..+++. ++.+
T Consensus 23 ~~~vv~~HG~~~~~--~~~~~~~~~L~~-~~~vi~~d~~G---~G~s~~---~~~~~~~~~~~~~~~~~~~~~~--l~~~ 91 (278)
T 3oos_A 23 GPPLCVTHLYSEYN--DNGNTFANPFTD-HYSVYLVNLKG---CGNSDS---AKNDSEYSMTETIKDLEAIREA--LYIN 91 (278)
T ss_dssp SSEEEECCSSEECC--TTCCTTTGGGGG-TSEEEEECCTT---STTSCC---CSSGGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCeEEEEcCCCcch--HHHHHHHHHhhc-CceEEEEcCCC---CCCCCC---CCCcccCcHHHHHHHHHHHHHH--hCCC
Confidence 47899999977653 346666677766 99999999999 444321 1111223466666666666665 3456
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC-----Ccch----hhhhccCC-------------
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-----PDWC----YVESYGSK------------- 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~-----~~~~----~~~~~~~~------------- 674 (771)
++.|+|||+||.+++.++.++|++++++|+.+|............. .... ....+...
T Consensus 92 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (278)
T 3oos_A 92 KWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSRE 171 (278)
T ss_dssp CEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred eEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHHH
Confidence 8999999999999999999999999999999998762111100000 0000 00000000
Q ss_pred ----------CCccCCCCCC-----hhhHHHH-----hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 675 ----------GKDSFTESPS-----VEDLTRF-----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 675 ----------~~~~~~~~~~-----~~~~~~~-----~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
....+...+. ......+ ...+....+.++++|+|+++|++|..+|++.++.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 248 (278)
T 3oos_A 172 WALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIP--- 248 (278)
T ss_dssp HHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHST---
T ss_pred HhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCCHHHHHHHHhhCC---
Confidence 0000000000 0111111 1223344567899999999999999999998888887764
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 765 (771)
++++++++++||.+... ...++.+.+.+|
T Consensus 249 -~~~~~~~~~~gH~~~~~-~p~~~~~~i~~f 277 (278)
T 3oos_A 249 -NATLTKFEESNHNPFVE-EIDKFNQFVNDT 277 (278)
T ss_dssp -TEEEEEETTCSSCHHHH-SHHHHHHHHHHT
T ss_pred -CcEEEEcCCcCCCcccc-cHHHHHHHHHhh
Confidence 37999999999986533 333555555555
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-18 Score=180.54 Aligned_cols=140 Identities=10% Similarity=0.031 Sum_probs=102.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------CCcch----HHHHHHHHCCcEEEEECCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~------------~~~~~----~~~~~la~~G~~Vv~~d~r 575 (771)
.+...+|.++.++++.|++. .++.|+||++||.+.... ...|. ..++.|+++||+|+++|+|
T Consensus 91 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~r 168 (391)
T 3g8y_A 91 EFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNA 168 (391)
T ss_dssp EECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCT
T ss_pred EEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCC
Confidence 44556788999999999742 567899999999654321 00112 5678999999999999999
Q ss_pred CCCCCChhhhhcC----------------CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 576 GSLGFGEEALQSL----------------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~~----------------~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|.++.+....... ...+....+.|+.+++++|.+++.+|++||+|+||||||++++.++.. ++
T Consensus 169 g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~a~~-~~ 247 (391)
T 3g8y_A 169 AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVL-DK 247 (391)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHHHHc-CC
Confidence 9554432211000 001111223789999999999888999999999999999999998886 56
Q ss_pred ceeEEEecCCccchh
Q 004141 640 KFVAAAARNPLCNLA 654 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~ 654 (771)
+++++|+.+++..+.
T Consensus 248 ~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 248 DIYAFVYNDFLCQTQ 262 (391)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred ceeEEEEccCCCCcc
Confidence 789999888877653
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=168.67 Aligned_cols=232 Identities=16% Similarity=0.160 Sum_probs=137.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+|..+++...-+ ...|+||++||.+ +......|...+..|++. |.|+++|+|| +|.+..... ..
T Consensus 14 ~~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~~----~~ 79 (285)
T 1c4x_A 14 SGTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIG---FGQSEYPET----YP 79 (285)
T ss_dssp CTTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTT---STTSCCCSS----CC
T ss_pred ECCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCC---CCCCCCCCC----cc
Confidence 3566776554321 2346799999964 222233566667777654 9999999999 554422110 01
Q ss_pred cchhhH----HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh--------hhhcCCCC
Q 004141 595 QDVNDV----LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA--------LMVGTTDI 662 (771)
Q Consensus 595 ~~~~D~----~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~--------~~~~~~~~ 662 (771)
..++++ .+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.+|..... .+......
T Consensus 80 ~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T 1c4x_A 80 GHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157 (285)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGS
T ss_pred cchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhcc
Confidence 234454 4444444443 234689999999999999999999999999999998754210 00000000
Q ss_pred CcchhhhhccCCCCccCCCC--C------------ChhhHHHHhh------------cCcccccCCCCCcEEEEeeCCCC
Q 004141 663 PDWCYVESYGSKGKDSFTES--P------------SVEDLTRFHS------------KSPISHISKVKTPTIFLLGAQDL 716 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~------------~sp~~~~~~i~~P~lii~G~~D~ 716 (771)
+.......+........... . .......+.. ......+.++++|+|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 237 (285)
T 1c4x_A 158 PRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDR 237 (285)
T ss_dssp CCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCS
T ss_pred ccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeCCCe
Confidence 00000000000000000000 0 0000000000 01223467889999999999999
Q ss_pred ccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 717 RVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 717 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.+|++.++.+++.+. +.++++++++||..... ...++.+.+.+||++
T Consensus 238 ~~p~~~~~~~~~~~~----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 284 (285)
T 1c4x_A 238 IVPLDTSLYLTKHLK----HAELVVLDRCGHWAQLE-RWDAMGPMLMEHFRA 284 (285)
T ss_dssp SSCTHHHHHHHHHCS----SEEEEEESSCCSCHHHH-SHHHHHHHHHHHHHC
T ss_pred eeCHHHHHHHHHhCC----CceEEEeCCCCcchhhc-CHHHHHHHHHHHHhc
Confidence 999998888777654 47999999999976543 355778888899864
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-17 Score=158.57 Aligned_cols=181 Identities=14% Similarity=0.061 Sum_probs=124.2
Q ss_pred CCcEEEEEcCCCCCCC-CCcchH-HHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 536 CDPLIVVLHGGPHSVS-LSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~-~~~~~~-~~~~la~~-G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+.|+||++||++.... ...|.. .+..|+++ ||.|+++|+||... .++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 4689999999876532 234555 67788777 99999999998311 123444555555422
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHh
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 692 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (771)
. .++++|+||||||.+++.++.++| ++++|+.+|...... .. ..... .+...+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~--------~~--~~~~~-----~~~~~~~-------- 118 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLG--------DE--NERAS-----GYFTRPW-------- 118 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTT--------CH--HHHHT-----STTSSCC--------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccc--------hh--hhHHH-----hhhcccc--------
Confidence 2 278999999999999999999998 999999988753210 00 00000 0000010
Q ss_pred hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 693 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 693 ~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
....+..+.+|+|+++|++|..+|++.++.+.+.+ . .+++++++++|.+... . .+.+..+++||++..
T Consensus 119 ---~~~~~~~~~~p~lii~G~~D~~vp~~~~~~~~~~~-~----~~~~~~~~~gH~~~~~-~-p~~~~~~~~fl~~~~ 186 (194)
T 2qs9_A 119 ---QWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRL-E----TKLHKFTDCGHFQNTE-F-HELITVVKSLLKVPA 186 (194)
T ss_dssp ---CHHHHHHHCSEEEEEEETTCSSSCHHHHHHHHHHH-T----CEEEEESSCTTSCSSC-C-HHHHHHHHHHHTCCC
T ss_pred ---cHHHHHhhCCCEEEEEeCCCCcCCHHHHHHHHHhc-C----CeEEEeCCCCCccchh-C-HHHHHHHHHHHHhhh
Confidence 11122334679999999999999999999998888 3 5889999999987643 3 356777889997643
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=170.61 Aligned_cols=227 Identities=16% Similarity=0.192 Sum_probs=137.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|..+++... + ..|.||++||.+.... ...|...+..| +.+|.|+++|+|| +|.+.... . ...
T Consensus 13 ~g~~l~y~~~------G--~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~~---~-~~~ 76 (282)
T 1iup_A 13 AGVLTNYHDV------G--EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRPE---N-YNY 76 (282)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCCT---T-CCC
T ss_pred CCEEEEEEec------C--CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCC---CCCCCCCC---C-CCC
Confidence 4666765443 1 2367999999543221 12455556666 6789999999999 55543211 0 122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-------hhhcCCCCCcchhh
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDWCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-------~~~~~~~~~~~~~~ 668 (771)
.++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.+|..... ..... .+.....
T Consensus 77 ~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (282)
T 1iup_A 77 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY--TPSIENM 152 (282)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC--CSCHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC--CCcHHHH
Confidence 455555555555554 245689999999999999999999999999999988754210 00000 0000000
Q ss_pred ----hhccCCC--C-----c-cC--CCCCCh-hhHHHHhh----------cCcccccCCCCCcEEEEeeCCCCccCcHHH
Q 004141 669 ----ESYGSKG--K-----D-SF--TESPSV-EDLTRFHS----------KSPISHISKVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 669 ----~~~~~~~--~-----~-~~--~~~~~~-~~~~~~~~----------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~ 723 (771)
..+.... . . .+ ...+.. .....+.. ..+...+.++++|+|+++|++|..+|++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~ 232 (282)
T 1iup_A 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSS 232 (282)
T ss_dssp HHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHHHH
Confidence 0000000 0 0 00 000000 00000000 001145678999999999999999999988
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++.+.+.. .++++++++||..... ...++.+.+.+||++
T Consensus 233 ~~~~~~~~~----~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 272 (282)
T 1iup_A 233 LRLGELIDR----AQLHVFGRCGHWTQIE-QTDRFNRLVVEFFNE 272 (282)
T ss_dssp HHHHHHCTT----EEEEEESSCCSCHHHH-SHHHHHHHHHHHHHT
T ss_pred HHHHHhCCC----CeEEEECCCCCCcccc-CHHHHHHHHHHHHhc
Confidence 887776643 7999999999986543 355788889999875
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=167.66 Aligned_cols=220 Identities=12% Similarity=0.051 Sum_probs=137.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.. ...|...+..|++ ||.|+++|+||. |.+...... .......+++.+.+..+++. ++.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G~---G~S~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVCA---GSVNPDFFD-FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTTS---TTSCGGGCC-TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCCC---CCCCCCCCC-ccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999997655 3456667777877 999999999994 444221111 11122456666666666555 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC-Cc--c-hhhhhccCC-------CCccCCCCCC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-PD--W-CYVESYGSK-------GKDSFTESPS 684 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~-~~--~-~~~~~~~~~-------~~~~~~~~~~ 684 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|............. .. . ......... ..........
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 68999999999999999999999999999999986432110000000 00 0 000000000 0000000000
Q ss_pred hh-------------------hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 685 VE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 685 ~~-------------------~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
.. ....+...+....+.++++|+|+++|++|..+|++.++.+.+.+.. .+++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 246 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG---KNTVHWLNIE 246 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS---CEEEEEEEEE
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC---CceEEEeCCC
Confidence 00 0111122344456778899999999999999999988888777643 2789999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+|.+.. +...++.+.+.+||++
T Consensus 247 gH~~~~-~~p~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 247 GHLPHL-SAPTLLAQELRRALSH 268 (269)
T ss_dssp SSCHHH-HCHHHHHHHHHHHHC-
T ss_pred CCCccc-cCHHHHHHHHHHHHhh
Confidence 998654 3455777888888865
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-18 Score=171.60 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=141.2
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHH-HHCC---cEEEEECCCCCCCCChhhh--hcCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVG---YSLLIVNYRGSLGFGEEAL--QSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~l-a~~G---~~Vv~~d~rG~~~~g~~~~--~~~~~ 590 (771)
.|.++..++|.|+++.+.+++|+|+++||++.......+......+ ++.| +.|+.+|+++...++...+ ...+.
T Consensus 28 ~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~~~~r~~~~~~~ 107 (275)
T 2qm0_A 28 EGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPS 107 (275)
T ss_dssp TCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCCHHHHHHHHCSS
T ss_pred CCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCcccccccccCCC
Confidence 5788999999999887678899999999975311011111122222 3467 9999999997543321110 00000
Q ss_pred ----------------Ccc-ccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 591 ----------------KVG-SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 ----------------~~~-~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
..+ .....+.+ +.+.++.++..+|+++++|+||||||++++.++.++|+.|+++++.+|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~f~~~~~~s~~~ 187 (275)
T 2qm0_A 108 VISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187 (275)
T ss_dssp CCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCT
T ss_pred CccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchhhceeEEeCcee
Confidence 011 01222222 23445555555788999999999999999999999999999999999986
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHH-
Q 004141 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL- 730 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l- 730 (771)
.+... .+.. ..+.+.... ......+|++++||+.|..++..++++++++|
T Consensus 188 ~~~~~-------------~~~~-------------~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L~ 238 (275)
T 2qm0_A 188 WWNNK-------------SVLE-------------KEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANELSERLL 238 (275)
T ss_dssp THHHH-------------GGGG-------------GTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred eeChH-------------HHHH-------------HHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHHHHHHHH
Confidence 32210 0000 000010000 02345689999999999999999999999999
Q ss_pred --HhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 731 --REKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 731 --~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
+..|+++++.++|+++|+.. ....+...+.||
T Consensus 239 ~~~~~g~~~~~~~~~g~~H~~~----~~~~l~~~l~~l 272 (275)
T 2qm0_A 239 QVNHDKLKFKFYEAEGENHASV----VPTSLSKGLRFI 272 (275)
T ss_dssp HCCCTTEEEEEEEETTCCTTTH----HHHHHHHHHHHH
T ss_pred hcccCCceEEEEECCCCCcccc----HHHHHHHHHHHH
Confidence 55788999999999999643 233445566665
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=170.41 Aligned_cols=213 Identities=17% Similarity=0.239 Sum_probs=129.3
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
+.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .....+++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKVN-----TGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHh--cCCCc
Confidence 459999997665 4468888899999999999999999 55442211 112344444444444433 23468
Q ss_pred EEEEEcChhHHHHHHHHhhCCC-ceeEEEecCCccchhhhhcC-C-CCCcchh--------------hhhccCCCCcc--
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGT-T-DIPDWCY--------------VESYGSKGKDS-- 678 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~~~~-~-~~~~~~~--------------~~~~~~~~~~~-- 678 (771)
+.|+||||||.+++.++.++|+ +++++|+.++.......... . ..+.... ...+.......
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYNLDE 171 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHH
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCCcccccCcCCcCCCcHHHHHHHHHHhhhhhhhhHHHHHhhhhhccc
Confidence 9999999999999999999998 99999998874321100000 0 0000000 00000000000
Q ss_pred -CCCCCChhhHHHH------------------hhcCcccccCCC---CCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCC
Q 004141 679 -FTESPSVEDLTRF------------------HSKSPISHISKV---KTPTIFLLGAQDLRVPVSNG-LQYARALREKGV 735 (771)
Q Consensus 679 -~~~~~~~~~~~~~------------------~~~sp~~~~~~i---~~P~lii~G~~D~~vp~~~~-~~~~~~l~~~g~ 735 (771)
.......+....+ ...+....+.++ ++|+|+++|++|..+|++.+ +.+.+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~---- 247 (279)
T 1hkh_A 172 NLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP---- 247 (279)
T ss_dssp HBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT----
T ss_pred CCcccccHHHHHhhhhhhccCcHHHHHHHHHHHhhchhhhHHHhccCCCCEEEEEcCCCccCChHHHHHHHHHhCC----
Confidence 0000000000000 011112235567 89999999999999998877 66666553
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.+++++++++|.+... ...++.+.+.+||+
T Consensus 248 ~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~ 278 (279)
T 1hkh_A 248 EADYVEVEGAPHGLLWT-HADEVNAALKTFLA 278 (279)
T ss_dssp TSEEEEETTCCTTHHHH-THHHHHHHHHHHHH
T ss_pred CeeEEEeCCCCccchhc-CHHHHHHHHHHHhh
Confidence 37899999999987533 45577888888885
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=167.54 Aligned_cols=219 Identities=12% Similarity=0.150 Sum_probs=138.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.. ...|...+..|++ ||.|+++|+||.+. +...... .......+++.+.+..+++. ++.+
T Consensus 28 ~~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G~G~---s~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVGSGQ---SDLESFS-TKRYSSLEGYAKDVEEILVA--LDLV 98 (282)
T ss_dssp SCEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTTSTT---SCGGGCC-TTGGGSHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCCCCC---CCCCCCC-ccccccHHHHHHHHHHHHHH--cCCC
Confidence 3899999997665 3467777888877 99999999999544 3221110 01112456666666666655 2457
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-C-CCC----------------cch--hhh-hccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-T-DIP----------------DWC--YVE-SYGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~-~~~----------------~~~--~~~-~~~~~~ 675 (771)
+++|+|||+||.+++.++.++|++++++|+.+|.......... . ... .|. +.. .+....
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 8999999999999999999999999999999987532211000 0 000 000 000 000000
Q ss_pred C--------ccCCCCCChh----hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 676 K--------DSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 676 ~--------~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
. ..+.. .... ........+....+.++++|+|+++|++|..+|++.+..+.+.+. ..++++++
T Consensus 179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~ 253 (282)
T 3qvm_A 179 SSELIGELSGSFCT-TDPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIP----NSQLELIQ 253 (282)
T ss_dssp CHHHHHHHHHHHHH-SCHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSS----SEEEEEEE
T ss_pred chhhHHHHHHHHhc-CCcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCC----CCcEEEec
Confidence 0 00000 0000 001111223335577889999999999999999998888877764 37999999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++|.+... ...++.+.+.+||++..
T Consensus 254 ~~gH~~~~~-~~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 254 AEGHCLHMT-DAGLITPLLIHFIQNNQ 279 (282)
T ss_dssp EESSCHHHH-CHHHHHHHHHHHHHHC-
T ss_pred CCCCccccc-CHHHHHHHHHHHHHhcC
Confidence 999986543 35678889999998753
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=169.60 Aligned_cols=231 Identities=16% Similarity=0.178 Sum_probs=137.9
Q ss_pred CC-ceEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 517 AQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 517 ~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~-~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+| ..+++...- .++.|.||++||.+ +......|...+..|++. |.|+++|+|| +|.+.... . ..
T Consensus 21 ~g~~~l~y~~~G------~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~~---~-~~ 86 (291)
T 2wue_A 21 DGPLKLHYHEAG------VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPG---YGHSDKRA---E-HG 86 (291)
T ss_dssp SSEEEEEEEEEC------TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTT---STTSCCCS---C-CS
T ss_pred CCcEEEEEEecC------CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCC---CCCCCCCC---C-CC
Confidence 56 677655442 22346899999964 222233566667777655 9999999999 55543211 1 12
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh------------hhcCCCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------------MVGTTDI 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~------------~~~~~~~ 662 (771)
..++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.+|...... +......
T Consensus 87 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 2wue_A 87 QFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVA 164 (291)
T ss_dssp SHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhcc
Confidence 3455555555555444 2346899999999999999999999999999999987542100 0000000
Q ss_pred CcchhhhhccCCCCccCCCC------------CChhhHHHHhh-----cC-----cc--cccCCCCCcEEEEeeCCCCcc
Q 004141 663 PDWCYVESYGSKGKDSFTES------------PSVEDLTRFHS-----KS-----PI--SHISKVKTPTIFLLGAQDLRV 718 (771)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-----~s-----p~--~~~~~i~~P~lii~G~~D~~v 718 (771)
+.+.....+........... ........+.. .. .. ..+.++++|+|+++|++|..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~ 244 (291)
T 2wue_A 165 PTRENLEAFLRVMVYDKNLITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRLRQPVLLIWGREDRVN 244 (291)
T ss_dssp CCHHHHHHHHHTSCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGCCSCEEEEEETTCSSS
T ss_pred CCHHHHHHHHHHhccCcccCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhCCCCeEEEecCCCCCC
Confidence 00000000000000000000 00000000000 00 11 456788999999999999999
Q ss_pred CcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 719 PVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 719 p~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
|++.++.+.+.+. ..++++++++||..... ....+.+.+.+||++
T Consensus 245 ~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 289 (291)
T 2wue_A 245 PLDGALVALKTIP----RAQLHVFGQCGHWVQVE-KFDEFNKLTIEFLGG 289 (291)
T ss_dssp CGGGGHHHHHHST----TEEEEEESSCCSCHHHH-THHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCC----CCeEEEeCCCCCChhhh-CHHHHHHHHHHHHhc
Confidence 9998888777664 37999999999976533 345777888888753
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=177.22 Aligned_cols=192 Identities=18% Similarity=0.130 Sum_probs=132.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhh------hcCCCCc-------cc-----
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL------QSLPGKV-------GS----- 594 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~------~~~~~~~-------~~----- 594 (771)
..++.|+||++||++.. ...|...++.|+++||.|+++|+||.+....... ......+ +.
T Consensus 94 ~~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 171 (383)
T 3d59_A 94 PGEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLKQEEETHI 171 (383)
T ss_dssp CSSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred cCCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeeeccccCcccchhh
Confidence 34578999999998765 3467888999999999999999998543211000 0000000 10
Q ss_pred ------cchhhHHHHHHHHHH--------------------cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecC
Q 004141 595 ------QDVNDVLTAIDHVID--------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 648 (771)
Q Consensus 595 ------~~~~D~~~~i~~l~~--------------------~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~ 648 (771)
...+|+..+++++.+ ...+|.+||+++|||+||.+++.++.+.+ +++++|+.+
T Consensus 172 ~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~-~v~a~v~~~ 250 (383)
T 3d59_A 172 RNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQ-RFRCGIALD 250 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEES
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCC-CccEEEEeC
Confidence 114688888888875 34467889999999999999999988755 699999887
Q ss_pred CccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHH
Q 004141 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR 728 (771)
Q Consensus 649 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~ 728 (771)
|... +.. ...+.++++|+|++||++|..+ .. .+..+
T Consensus 251 ~~~~------------------------------p~~-----------~~~~~~i~~P~Lii~g~~D~~~--~~-~~~~~ 286 (383)
T 3d59_A 251 AWMF------------------------------PLG-----------DEVYSRIPQPLFFINSEYFQYP--AN-IIKMK 286 (383)
T ss_dssp CCCT------------------------------TCC-----------GGGGGSCCSCEEEEEETTTCCH--HH-HHHHH
T ss_pred CccC------------------------------CCc-----------hhhhccCCCCEEEEecccccch--hh-HHHHH
Confidence 7421 000 0113567899999999999854 22 23335
Q ss_pred HHHhCCCCEEEEEeCCCCccCCC------------------CCCh----HHHHHHHHHHHHHhhC
Q 004141 729 ALREKGVETKVIVFPNDVHGIER------------------PQSD----FESFLNIGLWFKKYCK 771 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~~~~H~~~~------------------~~~~----~~~~~~i~~fl~~~L~ 771 (771)
.+...+.+.+++++++++|.+.. .... ..+...+++||+++|+
T Consensus 287 ~l~~~~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Fl~~~L~ 351 (383)
T 3d59_A 287 KCYSPDKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLG 351 (383)
T ss_dssp TTCCTTSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 56666778999999999998631 1112 2233469999999985
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-17 Score=166.99 Aligned_cols=215 Identities=16% Similarity=0.129 Sum_probs=128.1
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... . ...++++.+.+..+++. ++.
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~---~---~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRN---HGLSPRE---P---VMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTT---STTSCCC---S---CCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCC---CCCCCCC---C---CcCHHHHHHHHHHHHHH--cCC
Confidence 34779999997765 44688888888665 9999999999 5554321 1 12233443333333333 134
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc--cch----hh----hhc--CCCCCcchh-hhhccCCCC------
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL--CNL----AL----MVG--TTDIPDWCY-VESYGSKGK------ 676 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~--~~~----~~----~~~--~~~~~~~~~-~~~~~~~~~------ 676 (771)
+++.|+||||||.+++.++.++|++++++|+.++. ... .. +.. ......... ...+.....
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ 160 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHHH
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHHH
Confidence 68999999999999999999999999999986532 110 00 000 000000000 000000000
Q ss_pred ---ccCC---CCCChhhHH-HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 677 ---DSFT---ESPSVEDLT-RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 677 ---~~~~---~~~~~~~~~-~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
..+. ......... .+........+.++++|+|+++|++|..++++.++.+.+.+. ..++++++++||.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~ 236 (255)
T 3bf7_A 161 FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLLAQFP----QARAHVIAGAGHWV 236 (255)
T ss_dssp HHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCCCSCEEEECBTTCSTTCGGGHHHHHHHCT----TEEECCBTTCCSCH
T ss_pred HHHHhccCCceeecHHHHHhhhhhccccccccccCCCeEEEECCCCCCCCHHHHHHHHHHCC----CCeEEEeCCCCCcc
Confidence 0000 000000000 000000012256789999999999999999988877766554 38999999999986
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q 004141 750 ERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~ 769 (771)
.... ...+.+.+.+|+++|
T Consensus 237 ~~e~-p~~~~~~i~~fl~~~ 255 (255)
T 3bf7_A 237 HAEK-PDAVLRAIRRYLNDH 255 (255)
T ss_dssp HHHC-HHHHHHHHHHHHHTC
T ss_pred ccCC-HHHHHHHHHHHHhcC
Confidence 5433 457888999999764
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=171.57 Aligned_cols=230 Identities=16% Similarity=0.176 Sum_probs=139.2
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
..+++...-|. ...|.||++||++.+ ...|...+..|++.||.|+++|+|| ||.+.... ......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~~---~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKPV---DEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEES---CGGGCCHH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCeEEEeCCCC---CCCCCCCC---CcCCcCHH
Confidence 77876665442 114789999998765 3467788889999999999999999 55553211 11123345
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc--hhh---hh---cCCCC--Ccchhh
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN--LAL---MV---GTTDI--PDWCYV 668 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~--~~~---~~---~~~~~--~~~~~~ 668 (771)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... ... +. ..... ..|...
T Consensus 101 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (310)
T 1b6g_A 101 FHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXLMTDPVTQPAFSAFVTQPADGFTAWKYD 178 (310)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEeccccccCCccccchhhhhhccchHHHHHHHH
Confidence 555555444444 2346899999999999999999999999999999887431 000 00 00000 000000
Q ss_pred hhccC------------CCC-----ccCC-CCCChh---hHHHHhh--cC-----------cccccC-CCCCcEEEEeeC
Q 004141 669 ESYGS------------KGK-----DSFT-ESPSVE---DLTRFHS--KS-----------PISHIS-KVKTPTIFLLGA 713 (771)
Q Consensus 669 ~~~~~------------~~~-----~~~~-~~~~~~---~~~~~~~--~s-----------p~~~~~-~i~~P~lii~G~ 713 (771)
..... ... ..+. ...... ....+.. .. ....+. ++++|+|+++|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~ 258 (310)
T 1b6g_A 179 LVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQAXIDISTEAISFWQNDWNGQTFMAIGM 258 (310)
T ss_dssp HHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEEEEEET
T ss_pred hccCchhhhhhHHhhcCCCCCHHHHHHHhcccCCccchHHHHHHHHHhcccccchhhhhhhHhhhhhccccCceEEEecc
Confidence 00000 000 0000 000000 0000000 00 112355 899999999999
Q ss_pred CCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 714 ~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+|..+| +.++.+.+.+... ....++++++||.... ...++.+.+.+||++
T Consensus 259 ~D~~~~-~~~~~~~~~ip~~--~~~~i~~~~~GH~~~~--~p~~~~~~i~~Fl~~ 308 (310)
T 1b6g_A 259 KDKLLG-PDVMYPMKALING--CPEPLEIADAGHFVQE--FGEQVAREALKHFAE 308 (310)
T ss_dssp TCSSSS-HHHHHHHHHHSTT--CCCCEEETTCCSCGGG--GHHHHHHHHHHHHHH
T ss_pred Ccchhh-hHHHHHHHhcccc--cceeeecCCcccchhh--ChHHHHHHHHHHHhc
Confidence 999999 8888887777542 2333334999998775 556888999999975
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.7e-17 Score=172.84 Aligned_cols=131 Identities=17% Similarity=0.117 Sum_probs=91.3
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---------CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---------~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
..+.++++.|.+..+.++.|+||++||+++.... ..+...+..|+++||.|+++|+||.+..+.. .
T Consensus 61 ~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~-----~ 135 (397)
T 3h2g_A 61 ATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYA-----Y 135 (397)
T ss_dssp EEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCS-----S
T ss_pred EEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCC-----c
Confidence 5689999999875556789999999997765432 1256678888999999999999995543211 1
Q ss_pred CCcc-----ccchhhHHHHHHHHHHc-CCCCCCeEEEEEcChhHHHHHHHHhh-CC----C-ceeEEEecCCccchh
Q 004141 590 GKVG-----SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-AP----D-KFVAAAARNPLCNLA 654 (771)
Q Consensus 590 ~~~~-----~~~~~D~~~~i~~l~~~-~~~d~~ri~l~G~S~GG~~a~~~a~~-~p----~-~~~~~v~~~p~~~~~ 654 (771)
..+. ..++.|...++..+.++ +..++++|+|+||||||++++.++.. .+ + .+.+++..++..++.
T Consensus 136 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~ 212 (397)
T 3h2g_A 136 HPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALE 212 (397)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEESCCSSHH
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecccccccHH
Confidence 1111 12345555565555554 33346899999999999999887632 22 1 577888888877764
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=163.82 Aligned_cols=207 Identities=13% Similarity=0.217 Sum_probs=128.8
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH------H
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI------D 609 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~------~ 609 (771)
+.|+||++||.+... ..|. .+..|+ +||.|+++|+||. |.+. .......+++.+.+..++ +
T Consensus 15 ~~~~vv~~hG~~~~~--~~~~-~~~~l~-~g~~v~~~d~~g~---g~s~------~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (245)
T 3e0x_A 15 SPNTLLFVHGSGCNL--KIFG-ELEKYL-EDYNCILLDLKGH---GESK------GQCPSTVYGYIDNVANFITNSEVTK 81 (245)
T ss_dssp CSCEEEEECCTTCCG--GGGT-TGGGGC-TTSEEEEECCTTS---TTCC------SCCCSSHHHHHHHHHHHHHHCTTTT
T ss_pred CCCEEEEEeCCcccH--HHHH-HHHHHH-hCCEEEEecCCCC---CCCC------CCCCcCHHHHHHHHHHHHHhhhhHh
Confidence 468999999977653 3455 555564 8999999999994 4332 111223555555555555 3
Q ss_pred cCCCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhh-------cCCCCCcchhhhhccCC-------
Q 004141 610 MGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-------GTTDIPDWCYVESYGSK------- 674 (771)
Q Consensus 610 ~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~------- 674 (771)
. ++ +++|+|||+||.+++.++.+ +|+ ++++|+.+|........ .......+.........
T Consensus 82 ~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (245)
T 3e0x_A 82 H--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEK 156 (245)
T ss_dssp T--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHHH
T ss_pred h--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 3 33 89999999999999999999 999 99999999876541100 00000000000000000
Q ss_pred CCccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 675 GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 675 ~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....+...+. ..........+....+.++++|+|+++|++|..+|++.++.+.+.+. +++++++++++|.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~ 232 (245)
T 3e0x_A 157 YFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVE----NSELKIFETGKHFLLVV 232 (245)
T ss_dssp HHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSS----SEEEEEESSCGGGHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcC----CceEEEeCCCCcceEEe
Confidence 0000000000 01111222344555678899999999999999999998888877764 37999999999986532
Q ss_pred CChHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLW 765 (771)
Q Consensus 753 ~~~~~~~~~i~~f 765 (771)
...++.+.+.+|
T Consensus 233 -~~~~~~~~i~~f 244 (245)
T 3e0x_A 233 -NAKGVAEEIKNF 244 (245)
T ss_dssp -THHHHHHHHHTT
T ss_pred -cHHHHHHHHHhh
Confidence 333455555555
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.4e-17 Score=166.40 Aligned_cols=215 Identities=15% Similarity=0.186 Sum_probs=136.2
Q ss_pred CCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
..|+||++||.+.. ...|. ..+..|++.||.|+++|+|| +|.+... . ....+++.+.+..+++. ++
T Consensus 42 ~~~~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~---~---~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGA--GRTWHPHQVPAFLAAGYRCITFDNRG---IGATENA---E---GFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCC--GGGGTTTTHHHHHHTTEEEEEECCTT---SGGGTTC---C---SCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCc--hhhcchhhhhhHhhcCCeEEEEccCC---CCCCCCc---c---cCCHHHHHHHHHHHHHh--cC
Confidence 45889999997765 33565 56778889999999999999 5554321 1 12355555555554444 24
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc------------CCCCC-cchh----hhhccCCC--
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDIP-DWCY----VESYGSKG-- 675 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~------------~~~~~-~~~~----~~~~~~~~-- 675 (771)
.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....+ .+.. ...+....
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 46899999999999999999999999999999998753211100 00000 0000 00000000
Q ss_pred -----------CccCCCCCChhhHH---HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 676 -----------KDSFTESPSVEDLT---RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 676 -----------~~~~~~~~~~~~~~---~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.............. .....+....+.++++|+|+++|++|..+|++.++.+.+.+.. +++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~----~~~~~ 264 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPN----GRYLQ 264 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT----EEEEE
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCCC----ceEEE
Confidence 00000000000000 0111222345678899999999999999999988888777643 79999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++||.+.. +...++.+.+.+||++
T Consensus 265 ~~~~gH~~~~-~~p~~~~~~i~~fl~~ 290 (293)
T 3hss_A 265 IPDAGHLGFF-ERPEAVNTAMLKFFAS 290 (293)
T ss_dssp ETTCCTTHHH-HSHHHHHHHHHHHHHT
T ss_pred eCCCcchHhh-hCHHHHHHHHHHHHHh
Confidence 9999998653 3445778889999875
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-16 Score=165.76 Aligned_cols=234 Identities=12% Similarity=0.161 Sum_probs=135.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++++.... ..|+||++||.+.+ ...|...+..|++ ||.|+++|+|| +|.+...........
T Consensus 19 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G---~G~S~~~~~~~~~~~ 84 (306)
T 3r40_A 19 NTSSGRIFARVGG--------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPG---YGWSDMPESDEQHTP 84 (306)
T ss_dssp CCTTCCEEEEEEE--------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTT---STTSCCCCCCTTCGG
T ss_pred EeCCEEEEEEEcC--------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCC---CCCCCCCCCCcccCC
Confidence 3467778765542 34789999998765 3467778888877 99999999999 444432111111113
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC--------------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------------- 660 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~-------------- 660 (771)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|...........
T Consensus 85 ~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (306)
T 3r40_A 85 YTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPTYEYWQRMNRAYALKIYHWSFLA 162 (306)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCHHHHHHHCSHHHHHHSTHHHHHT
T ss_pred CCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCCccchhhhhhhhhhhhHHHHHhh
Confidence 3466666666666665 345689999999999999999999999999999999754321110000
Q ss_pred CC---C-------cchhhhhccCCCCcc-CCCCCChhhHHHHhh--cCc------------------------ccccCCC
Q 004141 661 DI---P-------DWCYVESYGSKGKDS-FTESPSVEDLTRFHS--KSP------------------------ISHISKV 703 (771)
Q Consensus 661 ~~---~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~sp------------------------~~~~~~i 703 (771)
.. . ...+...+....... .......+....+.. ..+ ...+.++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i 242 (306)
T 3r40_A 163 QPAPLPENLLGGDPDFYVKAKLASWTRAGDLSAFDPRAVEHYRIAFADPMRRHVMCEDYRAGAYADFEHDKIDVEAGNKI 242 (306)
T ss_dssp SCTTHHHHHHTSCHHHHHHHHHHHTSSSSSSTTSCHHHHHHHHHHHTSHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCCB
T ss_pred cccchHHHHHcCCHHHHHHHHhhcccCCCccccCCHHHHHHHHHHHccCCCcchhhHHHHhcccccchhhhhhhhhccCC
Confidence 00 0 000000000000000 000011111111110 000 0135788
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++|+|+++|++|..+|.....+.++.+. .++++.++ ++||.+.. +...++.+.|.+||++.
T Consensus 243 ~~P~lii~g~~D~~~~~~~~~~~~~~~~---~~~~~~~~-~~gH~~~~-e~p~~~~~~i~~fl~~~ 303 (306)
T 3r40_A 243 PVPMLALWGASGIAQSAATPLDVWRKWA---SDVQGAPI-ESGHFLPE-EAPDQTAEALVRFFSAA 303 (306)
T ss_dssp CSCEEEEEETTCC------CHHHHHHHB---SSEEEEEE-SSCSCHHH-HSHHHHHHHHHHHHHC-
T ss_pred CcceEEEEecCCcccCchhHHHHHHhhc---CCCeEEEe-cCCcCchh-hChHHHHHHHHHHHHhc
Confidence 9999999999999998555444444432 34777788 78997653 34557888999999764
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-17 Score=166.16 Aligned_cols=215 Identities=14% Similarity=0.204 Sum_probs=130.2
Q ss_pred cEEEEEcCCCC-CCCCCcchHHH-HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 538 PLIVVLHGGPH-SVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 538 p~vv~~HGg~~-~~~~~~~~~~~-~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
|+||++||.+. ......|...+ ..|++ +|.|+++|+|| +|.+.... ......+++.+.+..+++. ++.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPG---WGKSDSVV----NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTT---STTSCCCC----CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCC---CCCCCCCC----ccccCHHHHHHHHHHHHHH--hCC
Confidence 38999999642 12223455556 66655 59999999999 55442211 1123466666666666655 345
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC------------CCcchhhhhccCCCCccCCCCC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
+++.|+||||||.+++.++.++|++++++|+.+|............ .+.+.....+............
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 7899999999999999999999999999999887542100000000 0000000000000000000000
Q ss_pred C-------------hhhHHHHh---------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 684 S-------------VEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 684 ~-------------~~~~~~~~---------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
. ......+. .......+.++++|+|+++|++|..+|++.++.+.+.+.. .++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~ 262 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAG----SELHI 262 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSTT----CEEEE
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCCC----cEEEE
Confidence 0 00000000 0112245678899999999999999999998888777643 68999
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++++||..... ....+.+.+.+||+
T Consensus 263 i~~~gH~~~~e-~p~~~~~~i~~fl~ 287 (289)
T 1u2e_A 263 FRDCGHWAQWE-HADAFNQLVLNFLA 287 (289)
T ss_dssp ESSCCSCHHHH-THHHHHHHHHHHHT
T ss_pred eCCCCCchhhc-CHHHHHHHHHHHhc
Confidence 99999976543 34567788888875
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.9e-17 Score=167.21 Aligned_cols=229 Identities=17% Similarity=0.153 Sum_probs=137.2
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchh
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 598 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~ 598 (771)
..+++...-|. ...|.||++||.+.+ ...|...+..|++.||.|+++|+|| ||.+.... ......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~~---~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFG---FGRSDKPT---DDAVYTFG 99 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEES---CGGGCCHH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCC---CCCCCCCC---CcccCCHH
Confidence 77876665432 114789999997765 4467778889999999999999999 55543211 11122345
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----------hhc-CCCCCcch
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----------MVG-TTDIPDWC 666 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-----------~~~-~~~~~~~~ 666 (771)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++...... ... ........
T Consensus 100 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (297)
T 2xt0_A 100 FHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTALAVGLSPGKGFESWRDFVANSPDLDVGK 177 (297)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCCCSSSCSCHHHHHHHHHHHTCTTCCHHH
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCCCcccCCchhHHHHHHHhhcccccchhH
Confidence 555544444444 2346899999999999999999999999999999887431000 000 00000000
Q ss_pred hhhhccCCC----CccCC-CCCCh---hhHHHHhhc--------------CcccccC-CCCCcEEEEeeCCCCccCcHHH
Q 004141 667 YVESYGSKG----KDSFT-ESPSV---EDLTRFHSK--------------SPISHIS-KVKTPTIFLLGAQDLRVPVSNG 723 (771)
Q Consensus 667 ~~~~~~~~~----~~~~~-~~~~~---~~~~~~~~~--------------sp~~~~~-~i~~P~lii~G~~D~~vp~~~~ 723 (771)
......... ...+. ..... .....+... .....+. ++++|+|+++|++|..+| +.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~P~Lvi~G~~D~~~~-~~~ 256 (297)
T 2xt0_A 178 LMQRAIPGITDAEVAAYDAPFPGPEFKAGVRRFPAIVPITPDMEGAEIGRQAMSFWSTQWSGPTFMAVGAQDPVLG-PEV 256 (297)
T ss_dssp HHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHGGGGSCCSTTSTTHHHHHHHHHHHHHTCCSCEEEEEETTCSSSS-HHH
T ss_pred HHhccCccCCHHHHHHHhccccCcchhHHHHHHHHhCccccccchhhHHHHHHHHhhhccCCCeEEEEeCCCcccC-hHH
Confidence 000000000 00000 00000 000011000 0112356 899999999999999999 778
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+++.+.+... ....+.++++||.... ...++...+.+||+
T Consensus 257 ~~~~~~~p~~--~~~~~~~~~~GH~~~~--~p~~~~~~i~~fl~ 296 (297)
T 2xt0_A 257 MGMLRQAIRG--CPEPMIVEAGGHFVQE--HGEPIARAALAAFG 296 (297)
T ss_dssp HHHHHHHSTT--CCCCEEETTCCSSGGG--GCHHHHHHHHHHTT
T ss_pred HHHHHhCCCC--eeEEeccCCCCcCccc--CHHHHHHHHHHHHh
Confidence 8887776542 3344457999998775 45578888888874
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=154.70 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=115.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.|+||++||.+.+.. ..|...+. .|+++||.|+++|+|.+.. + ..+++.+.+..+++. . .
T Consensus 4 ~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------~------~~~~~~~~~~~~~~~--~-~ 64 (192)
T 1uxo_A 4 TKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------P------RLEDWLDTLSLYQHT--L-H 64 (192)
T ss_dssp CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------C------CHHHHHHHHHTTGGG--C-C
T ss_pred CCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------C------CHHHHHHHHHHHHHh--c-c
Confidence 478999999776532 14666664 6888999999999993211 1 345555555544444 2 5
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCC--ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhh
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHS 693 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~--~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (771)
++++++||||||.+++.++.++|+ +++++|+.+|...... .+..... +...+.
T Consensus 65 ~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~--------~~~~~~~--------~~~~~~--------- 119 (192)
T 1uxo_A 65 ENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQMLDE--------FTQGSF--------- 119 (192)
T ss_dssp TTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGGGG--------GTCSCC---------
T ss_pred CCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccc--------cchhhhh--------hhhcCC---------
Confidence 789999999999999999999999 9999999998754211 0100000 100010
Q ss_pred cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 694 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 694 ~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
....+.++++|+|+++|++|..+|++.++.+.+.+ . .+++++++++|.+..
T Consensus 120 --~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~-~----~~~~~~~~~gH~~~~ 170 (192)
T 1uxo_A 120 --DHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI-D----AALYEVQHGGHFLED 170 (192)
T ss_dssp --CHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT-T----CEEEEETTCTTSCGG
T ss_pred --CHHHHHhhcCCEEEEecCCCCcCCHHHHHHHHHhc-C----ceEEEeCCCcCcccc
Confidence 01233456689999999999999999998888877 3 689999999998764
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-17 Score=174.48 Aligned_cols=140 Identities=11% Similarity=0.015 Sum_probs=102.6
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------------CCcch----HHHHHHHHCCcEEEEECCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------------LSSYS----KSLAFLSSVGYSLLIVNYR 575 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~------------~~~~~----~~~~~la~~G~~Vv~~d~r 575 (771)
.+...+|.++.++++.|++. .++.|+||++||++.... ...|. ..++.|+++||+|+++|+|
T Consensus 96 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~r 173 (398)
T 3nuz_A 96 EFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNP 173 (398)
T ss_dssp EECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCT
T ss_pred EEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCC
Confidence 44566789999999999842 568899999999765321 01122 4778999999999999999
Q ss_pred CCCCCChhhhhc----------------CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 576 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 576 G~~~~g~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
|.++.+...... ....+....+.|+.+++++|.+++.+|++||+|+||||||++++.+++.. +
T Consensus 174 G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~aa~~-~ 252 (398)
T 3nuz_A 174 AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLD-T 252 (398)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHHHHHC-T
T ss_pred CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHHHhcC-C
Confidence 955443221100 11122223457999999999988888999999999999999999888874 5
Q ss_pred ceeEEEecCCccchh
Q 004141 640 KFVAAAARNPLCNLA 654 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~ 654 (771)
+++++|+.+++..+.
T Consensus 253 ~i~a~v~~~~~~~~~ 267 (398)
T 3nuz_A 253 SIYAFVYNDFLCQTQ 267 (398)
T ss_dssp TCCEEEEESCBCCHH
T ss_pred cEEEEEEecccccch
Confidence 788888877665543
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=171.67 Aligned_cols=246 Identities=13% Similarity=0.112 Sum_probs=146.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-------cchHHHH---HHHHCCcEEEEECCCC-CCCCChhhh
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-------SYSKSLA---FLSSVGYSLLIVNYRG-SLGFGEEAL 585 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-------~~~~~~~---~la~~G~~Vv~~d~rG-~~~~g~~~~ 585 (771)
+|..+++..+.++ ...+.|+||++||.+...... .|...+. .|++.||.|+++|+|| .++......
T Consensus 42 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~ 118 (377)
T 2b61_A 42 SYINVAYQTYGTL---NDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 118 (377)
T ss_dssp CSEEEEEEEESCC---CTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred cceeEEEEecccc---cccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcc
Confidence 4566665555443 222358999999987664320 1554443 3667899999999999 343321100
Q ss_pred -hcC-C----CCccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh---
Q 004141 586 -QSL-P----GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--- 655 (771)
Q Consensus 586 -~~~-~----~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--- 655 (771)
... . ..+....++++.+.+..+++. ++.+++. |+||||||.+++.+|.++|++++++|+.+|......
T Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~ 196 (377)
T 2b61_A 119 INPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAI 196 (377)
T ss_dssp BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHH
T ss_pred cCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCccccccch
Confidence 000 0 000124577777777777765 3456887 999999999999999999999999999998643210
Q ss_pred -hh-----cCCCCCcchh------------------------------hhhccCCCCcc--------------------C
Q 004141 656 -MV-----GTTDIPDWCY------------------------------VESYGSKGKDS--------------------F 679 (771)
Q Consensus 656 -~~-----~~~~~~~~~~------------------------------~~~~~~~~~~~--------------------~ 679 (771)
+. .....+.|.. ...+....... +
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 2b61_A 197 GFNHVMRQAVINDPNFNGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKF 276 (377)
T ss_dssp HHHHHHHHHHHTSTTCGGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccccchhccCCCchhhhHHHHhhhhcccCHHHHHHHhccccccccccccchHHHHHHHHhhhhhh
Confidence 00 0000000100 00000000000 0
Q ss_pred CCCCChhhH----HHHhhcC-------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC-CCCc
Q 004141 680 TESPSVEDL----TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP-NDVH 747 (771)
Q Consensus 680 ~~~~~~~~~----~~~~~~s-------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~-~~~H 747 (771)
......... ..+.... ....+.++++|+|+++|++|.++|+++..+..+.+.+....+++++++ ++||
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~D~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~gH 356 (377)
T 2b61_A 277 LERFDANSYLHLLRALDMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGH 356 (377)
T ss_dssp HTTCCHHHHHHHHHHHHHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGG
T ss_pred ccccChhHHHHHHHHHhccccccccchHHhhhhhcCCCEEEEecCCcccCCccchHHHHHHHHhcCCCceEEEeCCCCCc
Confidence 000000000 0011111 134567889999999999999999966666666666665668999999 9999
Q ss_pred cCCCCCChHHHHHHHHHHHHH
Q 004141 748 GIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.+.... ..++.+.|.+||++
T Consensus 357 ~~~~e~-p~~~~~~i~~fl~~ 376 (377)
T 2b61_A 357 DAFLVD-YDQFEKRIRDGLAG 376 (377)
T ss_dssp GHHHHC-HHHHHHHHHHHHHT
T ss_pred hhhhcC-HHHHHHHHHHHHhc
Confidence 866433 45788889999875
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.4e-17 Score=166.05 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=137.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCC-CCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH-SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~-~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+|.++++... + ..|.||++||++. ......|...+..|++. |.|+++|+|| +|.+. .. ....
T Consensus 24 ~g~~l~y~~~------g--~g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~-~~----~~~~ 86 (296)
T 1j1i_A 24 GGVETRYLEA------G--KGQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLG---FGKTA-KP----DIEY 86 (296)
T ss_dssp TTEEEEEEEE------C--CSSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTT---STTSC-CC----SSCC
T ss_pred CCEEEEEEec------C--CCCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCC---CCCCC-CC----CCCC
Confidence 5667765432 1 1367999999642 22223455667777655 9999999999 55443 11 1122
Q ss_pred chhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-CCC----CCcchhhh
Q 004141 596 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTD----IPDWCYVE 669 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-~~~----~~~~~~~~ 669 (771)
..+++.+.+..+++.- .. +++.|+||||||.+++.++.++|++++++|+.+|......... ... .+......
T Consensus 87 ~~~~~~~dl~~~l~~l--~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (296)
T 1j1i_A 87 TQDRRIRHLHDFIKAM--NFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMV 164 (296)
T ss_dssp CHHHHHHHHHHHHHHS--CCSSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHH
T ss_pred CHHHHHHHHHHHHHhc--CCCCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHH
Confidence 3555555555555442 33 6899999999999999999999999999999987642110000 000 00000000
Q ss_pred hccCCCCccCCCCCChh----------------hHHHHh--------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 670 SYGSKGKDSFTESPSVE----------------DLTRFH--------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~----------------~~~~~~--------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
.+....... ......+ ...... .......+.++++|+|+++|++|..+|++.++.
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~~~ 243 (296)
T 1j1i_A 165 HLVKALTND-GFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 243 (296)
T ss_dssp HHHHHHSCT-TCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhccC-cccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHHHH
Confidence 000000000 0000000 000000 011223467889999999999999999998888
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 726 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+.+.+. +.++++++++||.... +...++.+.+.+||.+.+
T Consensus 244 ~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 283 (296)
T 1j1i_A 244 FLDLID----DSWGYIIPHCGHWAMI-EHPEDFANATLSFLSLRV 283 (296)
T ss_dssp HHHHCT----TEEEEEESSCCSCHHH-HSHHHHHHHHHHHHHHC-
T ss_pred HHHHCC----CCEEEEECCCCCCchh-cCHHHHHHHHHHHHhccC
Confidence 877664 3789999999997654 345678889999998754
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-17 Score=162.49 Aligned_cols=218 Identities=17% Similarity=0.098 Sum_probs=129.3
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .....++++.+.+..+++.-. .
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~l~-~ 77 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSA---AGINPRRL----DEIHTFRDYSEPLMEVMASIP-P 77 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHHHHHHHHHHHSC-T
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCC---CCCCCCCc----ccccCHHHHHHHHHHHHHHhC-C
Confidence 456889999997754 3468888899988999999999999 55442110 011235555555555554421 1
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---------hhhcCCCCCcchh--hhhccC----------
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCY--VESYGS---------- 673 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---------~~~~~~~~~~~~~--~~~~~~---------- 673 (771)
.+++.|+||||||.+++.++.++|++++++|+.++..... .+........|.. ...+..
T Consensus 78 ~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 2wfl_A 78 DEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMMPDPNHSLTYPFEKYNEKCPADMMLDSQFSTYGNPENPGMSMIL 157 (264)
T ss_dssp TCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCCCCTTSCTTHHHHHHHHHSCTTTTTTCEEEEESCTTSCEEEEEC
T ss_pred CCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeeccCCCCcchhhHHHHhhhcCcchhhhhhhhhhccCCCCCcchhhh
Confidence 3689999999999999999999999999999887642100 0000000000000 000000
Q ss_pred --CCC-ccCCCCCChhhHHHHh-hcCcc----------ccc---CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCC
Q 004141 674 --KGK-DSFTESPSVEDLTRFH-SKSPI----------SHI---SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVE 736 (771)
Q Consensus 674 --~~~-~~~~~~~~~~~~~~~~-~~sp~----------~~~---~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~ 736 (771)
... ..+......+...... ...+. ..+ ...++|+|+++|++|..+|++.++.+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p~---- 233 (264)
T 2wfl_A 158 GPQFMALKMFQNCSVEDLELAKMLTRPGSLFFQDLAKAKKFSTERYGSVKRAYIFCNEDKSFPVEFQKWFVESVGA---- 233 (264)
T ss_dssp CHHHHHHHTSTTSCHHHHHHHHHHCCCEECCHHHHTTSCCCCTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHhcCCCHHHHHHHHhccCCCcccccccccccccChHHhCCCCeEEEEeCCcCCCCHHHHHHHHHhCCC----
Confidence 000 0000000001100000 00000 001 11358999999999999999988888877743
Q ss_pred EEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 737 TKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 737 ~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.++++++++||..... ...++.+.+.+|++
T Consensus 234 ~~~~~i~~~gH~~~~e-~P~~~~~~l~~f~~ 263 (264)
T 2wfl_A 234 DKVKEIKEADHMGMLS-QPREVCKCLLDISD 263 (264)
T ss_dssp SEEEEETTCCSCHHHH-SHHHHHHHHHHHHC
T ss_pred ceEEEeCCCCCchhhc-CHHHHHHHHHHHhh
Confidence 6889999999986533 34477777888764
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-16 Score=160.39 Aligned_cols=194 Identities=12% Similarity=0.018 Sum_probs=129.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-----CcchHHHHHHHHCC----cEEEEECCCCCCCCChhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-----~~~~~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~ 585 (771)
+.++ .+.+++|.|+++.+.+++|+||++||++..... ..+...++.|+++| |+|+++|++|..+.+.
T Consensus 48 s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~~~~~~--- 123 (297)
T 1gkl_A 48 GING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQ--- 123 (297)
T ss_dssp ETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCSTTCCTT---
T ss_pred cCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCCccchH---
Confidence 3344 899999999987667889999999998754321 12335567777764 9999999987432211
Q ss_pred hcCCCCccccchhhHHHHHHHHHHcCC------------CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch
Q 004141 586 QSLPGKVGSQDVNDVLTAIDHVIDMGL------------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~~~------------~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~ 653 (771)
.+.....+++. .++.+... .++++++|+|+||||++++.++.++|++|+++++.+|....
T Consensus 124 -----~~~~~~~~~l~---~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~sg~~~~ 195 (297)
T 1gkl_A 124 -----NFYQEFRQNVI---PFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWY 195 (297)
T ss_dssp -----THHHHHHHTHH---HHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCB
T ss_pred -----HHHHHHHHHHH---HHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEecccccc
Confidence 11111123444 34444322 26678999999999999999999999999999999987532
Q ss_pred hhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC
Q 004141 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK 733 (771)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 733 (771)
... +. ........+... ..+.....++++.+|+.|..+ .+.+++.++|++.
T Consensus 196 ~~~---------------~~---------~~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~~--~~~~~l~~~L~~~ 246 (297)
T 1gkl_A 196 GNS---------------PQ---------DKANSIAEAINR---SGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKAL 246 (297)
T ss_dssp SSS---------------HH---------HHHHHHHHHHHH---HTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTS
T ss_pred CCc---------------cc---------hhhhHHHHHHhh---ccCCcCcEEEEEEeCCCcccc--hhHHHHHHHHHHc
Confidence 100 00 000011111111 112233466778899999875 6788999999999
Q ss_pred C----------CCEEEEEeCCCCccC
Q 004141 734 G----------VETKVIVFPNDVHGI 749 (771)
Q Consensus 734 g----------~~~~~~~~~~~~H~~ 749 (771)
| +++++.++++++|.+
T Consensus 247 g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 247 PHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred CCccccccccCCceEEEECCCCCcCH
Confidence 8 589999999999964
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=170.60 Aligned_cols=227 Identities=13% Similarity=0.190 Sum_probs=140.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.-+|.++++..+.++ ..|+||++||++.. ...|...+..|+ +||.|+++|+|| +|.+... ...
T Consensus 16 ~~~g~~l~~~~~g~~------~~~~vl~lHG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~~-----~~~ 78 (299)
T 3g9x_A 16 EVLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDKP-----DLD 78 (299)
T ss_dssp EETTEEEEEEEESCS------SSCCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCCC-----CCC
T ss_pred eeCCeEEEEEecCCC------CCCEEEEECCCCcc--HHHHHHHHHHHc-cCCEEEeeCCCC---CCCCCCC-----CCc
Confidence 336777876665432 34789999997765 335666777774 699999999999 4444221 113
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC----------Cc
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI----------PD 664 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~----------~~ 664 (771)
...+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++............. +.
T Consensus 79 ~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (299)
T 3g9x_A 79 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTAD 156 (299)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECCCBSSGGGSCGGGHHHHHHHTSSS
T ss_pred ccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCcchhhhhhcchHHHHHHHHHcCCC
Confidence 3466666666666665 34568999999999999999999999999999988854322100000000 00
Q ss_pred ---------chhhhhccCCCCccCCCCCChhhHHHH-----------------hhc--------------CcccccCCCC
Q 004141 665 ---------WCYVESYGSKGKDSFTESPSVEDLTRF-----------------HSK--------------SPISHISKVK 704 (771)
Q Consensus 665 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~--------------sp~~~~~~i~ 704 (771)
..+...+.. ..............+ ... +....+.+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 233 (299)
T 3g9x_A 157 VGRELIIDQNAFIEGALP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSP 233 (299)
T ss_dssp HHHHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCC
T ss_pred cchhhhccchhhHHHhhh---hhhccCCCHHHHHHHHHHhccccccchhhhhhhhhhhccccchhhhhhhhhhhhcccCC
Confidence 000000000 000000001111100 000 1112246789
Q ss_pred CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 705 TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 705 ~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+|+|+++|++|..+|++.++.+.+.+.. +++++++++||.+.. +...++.+.|.+++.+
T Consensus 234 ~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~gH~~~~-e~p~~~~~~i~~~~~~ 292 (299)
T 3g9x_A 234 VPKLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQE-DNPDLIGSEIARWLPA 292 (299)
T ss_dssp SCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCHHH-HCHHHHHHHHHHHSGG
T ss_pred CCeEEEecCCCCCCCHHHHHHHHhhCCC----CeEEEeCCCCCcchh-cCHHHHHHHHHHHHhh
Confidence 9999999999999999988888777643 789999999997653 3344566666666543
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=167.61 Aligned_cols=229 Identities=15% Similarity=0.196 Sum_probs=139.3
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...-+ ++.|.||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.. +. ....
T Consensus 15 ~g~~l~y~~~G~------g~~~pvvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~---~~--~~~~ 77 (316)
T 3afi_E 15 LGSSMAYRETGA------QDAPVVLFLHGNPTS--SHIWRNILPLVSP-VAHCIAPDLIG---FGQSGK---PD--IAYR 77 (316)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGGTTTHHHHTT-TSEEEEECCTT---STTSCC---CS--SCCC
T ss_pred CCEEEEEEEeCC------CCCCeEEEECCCCCc--hHHHHHHHHHHhh-CCEEEEECCCC---CCCCCC---CC--CCCC
Confidence 466676554421 223589999998765 3467777888865 59999999999 555532 11 1234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc---hhhhh----------------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN---LALMV---------------- 657 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~---~~~~~---------------- 657 (771)
++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... +....
T Consensus 78 ~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (316)
T 3afi_E 78 FFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFIRPMPTWQDFHHTEVAEEQDHAEAARA 155 (316)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEECCCBSSGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccCCCcchhhhccchhhccccccchhHHH
Confidence 66666666666655 2347899999999999999999999999999998876321 00000
Q ss_pred --cCCCCCc--chhhh---hccCCCCcc-CCCCCChhhHHHH----------------hhcCc---------------cc
Q 004141 658 --GTTDIPD--WCYVE---SYGSKGKDS-FTESPSVEDLTRF----------------HSKSP---------------IS 698 (771)
Q Consensus 658 --~~~~~~~--~~~~~---~~~~~~~~~-~~~~~~~~~~~~~----------------~~~sp---------------~~ 698 (771)
.....+. ..... .+....... .......+....+ ..... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (316)
T 3afi_E 156 VFRKFRTPGEGEAMILEANAFVERVLPGGIVRKLGDEEMAPYRTPFPTPESRRPVLAFPRELPIAGEPADVYEALQSAHA 235 (316)
T ss_dssp HHHHHTSTTHHHHHHTTSCHHHHTTTGGGCSSCCCHHHHHHHHTTCCSTGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCchhhHHHhccchHHHHhcccccCCCCCHHHHHHHHhhcCCccchhHHHHHHHhccccccchhhhhHHHHHHH
Confidence 0000000 00000 000000000 0000000000000 00000 01
Q ss_pred ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 699 HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 699 ~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
.+.++++|+|+++|++|..+|++.++.+.+.+. ..++++++++||....+ ....+.+.|.+||++.
T Consensus 236 ~l~~i~~P~Lvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~GH~~~~e-~p~~~~~~i~~fl~~~ 301 (316)
T 3afi_E 236 ALAASSYPKLLFTGEPGALVSPEFAERFAASLT----RCALIRLGAGLHYLQED-HADAIGRSVAGWIAGI 301 (316)
T ss_dssp HHHHCCSCEEEEEEEECSSSCHHHHHHHHHHSS----SEEEEEEEEECSCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhccCCCeEEEecCCCCccCHHHHHHHHHhCC----CCeEEEcCCCCCCchhh-CHHHHHHHHHHHHhhc
Confidence 234689999999999999999888887776654 37899999999986533 3457888899999764
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=162.05 Aligned_cols=231 Identities=15% Similarity=0.233 Sum_probs=132.2
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.++++..+.+.+ +.|+||++||.+.+ ...|...+..|++ ||.|+++|+|| +|.+... ....
T Consensus 11 ~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~---~~~~ 76 (285)
T 3bwx_A 11 TSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRG---RGDSDYA---KDPM 76 (285)
T ss_dssp ECTTSCEEEEEEECBCT-----TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTT---BTTSCCC---SSGG
T ss_pred ecCCCceEEEEEcCCCC-----CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCC---CCCCCCC---CCcc
Confidence 34567888877775431 24679999997765 4468888888866 99999999999 5544321 0111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCC--ccchhh------hhcCC-CCCc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP--LCNLAL------MVGTT-DIPD 664 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p--~~~~~~------~~~~~-~~~~ 664 (771)
...++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++ ...... +.... ....
T Consensus 77 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 3bwx_A 77 TYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLNDVGPEVSPEGLERIRGYVGQGRNFET 154 (285)
T ss_dssp GCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHTTCCCEESS
T ss_pred ccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEecCCcccCcchhHHHHHHhcCCccccc
Confidence 22333333333333332 1346799999999999999999999999999998643 221100 00000 0000
Q ss_pred chhh-hhccCCCCccCCCCCChhhHH-------------------------HHhhc-------CcccccCCC-CCcEEEE
Q 004141 665 WCYV-ESYGSKGKDSFTESPSVEDLT-------------------------RFHSK-------SPISHISKV-KTPTIFL 710 (771)
Q Consensus 665 ~~~~-~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~-------sp~~~~~~i-~~P~lii 710 (771)
|... ..+.......+.... ..... .+... .....+.++ ++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~lii 233 (285)
T 3bwx_A 155 WMHAARALQESSGDVYPDWD-ITQWLRYAKRIMVLGSSGRIAFDYDMKIAEPFEAPVGATPQVDMWPLFDALATRPLLVL 233 (285)
T ss_dssp HHHHHHHHHHHHTTTSTTCC-HHHHHHHHHHHEEECTTSCEEESBCGGGGCCTTSCTTCCCSSCCHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhhhhcccccC-hHHHHHHHHhhheeCCCCceeeccCHHHHHHHhhhhhccccchhhHHHHHccCCCeEEE
Confidence 1000 000000000000000 00000 00000 000012233 7999999
Q ss_pred eeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 711 LGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 711 ~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+|++|..++++.++.+.+. .+.++++++++||...... . +.+..|.+||++
T Consensus 234 ~G~~D~~~~~~~~~~~~~~-----~~~~~~~i~~~gH~~~~e~-p-~~~~~i~~fl~~ 284 (285)
T 3bwx_A 234 RGETSDILSAQTAAKMASR-----PGVELVTLPRIGHAPTLDE-P-ESIAAIGRLLER 284 (285)
T ss_dssp EETTCSSSCHHHHHHHHTS-----TTEEEEEETTCCSCCCSCS-H-HHHHHHHHHHTT
T ss_pred EeCCCCccCHHHHHHHHhC-----CCcEEEEeCCCCccchhhC-c-hHHHHHHHHHHh
Confidence 9999999998776665443 4589999999999866444 3 334678888863
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=170.50 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=135.9
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
+..+.+..+.+ ..|+||++||.+.. ...|...+..| ||.|+++|+|| +|.+... .......
T Consensus 69 ~~~~~~~~~g~-------~~~~vv~~hG~~~~--~~~~~~~~~~l---g~~Vi~~D~~G---~G~S~~~----~~~~~~~ 129 (330)
T 3p2m_A 69 AGAISALRWGG-------SAPRVIFLHGGGQN--AHTWDTVIVGL---GEPALAVDLPG---HGHSAWR----EDGNYSP 129 (330)
T ss_dssp ETTEEEEEESS-------SCCSEEEECCTTCC--GGGGHHHHHHS---CCCEEEECCTT---STTSCCC----SSCBCCH
T ss_pred CceEEEEEeCC-------CCCeEEEECCCCCc--cchHHHHHHHc---CCeEEEEcCCC---CCCCCCC----CCCCCCH
Confidence 34466555533 24779999997765 33565555554 99999999999 4444211 1122345
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc--CCC----------CCcc
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--TTD----------IPDW 665 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~--~~~----------~~~~ 665 (771)
+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......... ... ...+
T Consensus 130 ~~~a~dl~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (330)
T 3p2m_A 130 QLNSETLAPVLRE--LAPGAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREF 207 (330)
T ss_dssp HHHHHHHHHHHHH--SSTTCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCB
T ss_pred HHHHHHHHHHHHH--hCCCCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccc
Confidence 5666666666555 3457899999999999999999999999999999998654211100 000 0000
Q ss_pred hhhhhccCCCCccCCCCCChhhHHHHhhc--------------C----------cccccCCCCCcEEEEeeCCCCccCcH
Q 004141 666 CYVESYGSKGKDSFTESPSVEDLTRFHSK--------------S----------PISHISKVKTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------s----------p~~~~~~i~~P~lii~G~~D~~vp~~ 721 (771)
............ ................ . ....+.++++|+|+++|++|..+|++
T Consensus 208 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~ 286 (330)
T 3p2m_A 208 PSFQAMLDLTIA-AAPHRDVKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDALSAPITLVRGGSSGFVTDQ 286 (330)
T ss_dssp SCHHHHHHHHHH-HCTTSCHHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHHCCSCEEEEEETTCCSSCHH
T ss_pred cCHHHHHHHHHh-cCCCCCHHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhhCCCCEEEEEeCCCCCCCHH
Confidence 000000000000 0000000000000000 0 01235678999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEE-EEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 722 NGLQYARALREKGVETK-VIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 722 ~~~~~~~~l~~~g~~~~-~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.++.+.+.+.. .+ +++++++||.+.. +...++.+.+.+||++
T Consensus 287 ~~~~l~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 329 (330)
T 3p2m_A 287 DTAELHRRATH----FRGVHIVEKSGHSVQS-DQPRALIEIVRGVLDT 329 (330)
T ss_dssp HHHHHHHHCSS----EEEEEEETTCCSCHHH-HCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCC----CeeEEEeCCCCCCcch-hCHHHHHHHHHHHHhc
Confidence 88888776643 67 9999999998653 3445777888888764
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=161.90 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=131.2
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
|.||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+.... . . ...++++.+.+..+++. ++.++
T Consensus 17 ~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~~~~--~-~-~~~~~~~~~dl~~~l~~--l~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPG---HGEDQSSM--D-E-TWNFDYITTLLDRILDK--YKDKS 84 (269)
T ss_dssp EEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTT---STTCCCCT--T-S-CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred CeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCC---CCCCCCCC--C-C-ccCHHHHHHHHHHHHHH--cCCCc
Confidence 469999997765 34677778888764 9999999999 55543211 1 0 23456666666656555 34578
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh----cC---CCC------Ccch-hhhhccCCCCccCCC--
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----GT---TDI------PDWC-YVESYGSKGKDSFTE-- 681 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~----~~---~~~------~~~~-~~~~~~~~~~~~~~~-- 681 (771)
+.|+||||||.+|+.++.++|++++++|+.++........ .. ... .... +...+... ..+..
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 162 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSPGIKEEANQLERRLVDDARAKVLDIAGIELFVNDWEKL--PLFQSQL 162 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCSCCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTS--GGGGGGG
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCcccCCchhHHHHhhhhhHHHHhhccccHHHHHHHHHhC--ccccccc
Confidence 9999999999999999999999999999998754321000 00 000 0000 00000000 00000
Q ss_pred -CC--------------ChhhHH-HHh------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 682 -SP--------------SVEDLT-RFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 682 -~~--------------~~~~~~-~~~------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
.. ...... .+. ..+....+.++++|+|+++|++|..+|++..+ +.+.+ .++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~-~~~~~----~~~~~ 237 (269)
T 2xmz_A 163 ELPVEIQHQIRQQRLSQSPHKMAKALRDYGTGQMPNLWPRLKEIKVPTLILAGEYDEKFVQIAKK-MANLI----PNSKC 237 (269)
T ss_dssp GSCHHHHHHHHHHHHTSCHHHHHHHHHHHSTTTSCCCGGGGGGCCSCEEEEEETTCHHHHHHHHH-HHHHS----TTEEE
T ss_pred cCCHHHHHHHHHHHhccCcHHHHHHHHHHHhccCccHHHHHHhcCCCEEEEEeCCCcccCHHHHH-HHhhC----CCcEE
Confidence 00 000000 000 01112356788999999999999999876543 54443 34899
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++++++||.+... ...++.+.+.+||++.
T Consensus 238 ~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~ 266 (269)
T 2xmz_A 238 KLISATGHTIHVE-DSDEFDTMILGFLKEE 266 (269)
T ss_dssp EEETTCCSCHHHH-SHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCChhhc-CHHHHHHHHHHHHHHh
Confidence 9999999987643 4557888999999764
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=166.58 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=88.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++....|+ ....|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.. +......
T Consensus 10 ~~g~~l~y~~~G~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g---~g~s~~---~~~~~~~ 77 (356)
T 2e3j_A 10 CRGTRIHAVADSPP----DQQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRG---YGRSSK---YRVQKAY 77 (356)
T ss_dssp ETTEEEEEEEECCT----TCCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCC---CCSGGGG
T ss_pred cCCeEEEEEEecCC----CCCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCC---CCCCCC---CCccccc
Confidence 35788887777654 1245889999997765 3457777888989999999999999 444321 1111122
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
...++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.++..
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 78 RIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 345555555555544 345789999999999999999999999999999987654
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2e-16 Score=178.71 Aligned_cols=232 Identities=15% Similarity=0.188 Sum_probs=144.1
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.+++..... +.|+||++||++.+ ...|...+..|+++||.|+++|+|| +|.+... ......
T Consensus 245 ~dg~~l~~~~~g--------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G---~G~S~~~---~~~~~~ 308 (555)
T 3i28_A 245 KPRVRLHFVELG--------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSAP---PEIEEY 308 (555)
T ss_dssp ETTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTSCCC---SCGGGG
T ss_pred CCCcEEEEEEcC--------CCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC---CCcccc
Confidence 367777654432 35899999998765 3467788899999999999999999 4444221 111222
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh-------------------
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM------------------- 656 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~------------------- 656 (771)
..+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|.......
T Consensus 309 ~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
T 3i28_A 309 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 386 (555)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCTTSCHHHHHHTCGGGHHHHH
T ss_pred cHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCCCCCCcccchHHHHhcCCccchhHH
Confidence 344544444444443 24568999999999999999999999999999988775321000
Q ss_pred hcCCCCCc--------chhhhhccCC---------------------CCccCCCCCChhhHHHHh---------------
Q 004141 657 VGTTDIPD--------WCYVESYGSK---------------------GKDSFTESPSVEDLTRFH--------------- 692 (771)
Q Consensus 657 ~~~~~~~~--------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--------------- 692 (771)
........ ..+...+... ...........+....+.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (555)
T 3i28_A 387 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 466 (555)
T ss_dssp HHSTTHHHHHHHHCHHHHHHHHSCCTTSCCCCCSSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHTTTTTHHHHHTT
T ss_pred hhCCCchHHHHhhhHHHHHHHHhccccccccccccccccccccccCccccccccccCHHHHHHHHHHHhcccchhHHHHH
Confidence 00000000 0000000000 000000000011111110
Q ss_pred -------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004141 693 -------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 693 -------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 765 (771)
..+....+.++++|+|+++|++|..+|++.++.+++.+. ++++++++++||.... +...++.+.+.+|
T Consensus 467 ~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~f 541 (555)
T 3i28_A 467 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQM-DKPTEVNQILIKW 541 (555)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHH-HSHHHHHHHHHHH
T ss_pred HhccccchhhccccccccccCEEEEEeCCCCCcCHHHHHHHHhhCC----CceEEEeCCCCCCcch-hCHHHHHHHHHHH
Confidence 012223456889999999999999999998888776654 3789999999997653 3456788899999
Q ss_pred HHHhh
Q 004141 766 FKKYC 770 (771)
Q Consensus 766 l~~~L 770 (771)
|++..
T Consensus 542 l~~~~ 546 (555)
T 3i28_A 542 LDSDA 546 (555)
T ss_dssp HHHHT
T ss_pred HHhcc
Confidence 98764
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=161.58 Aligned_cols=217 Identities=14% Similarity=0.089 Sum_probs=136.7
Q ss_pred cEEEEEcCCCCCCCCCcchHH---HHHHHHCCcEEEEECCCCCCCCChhhhhcCC--CCccccchhhH--HHHHHHHHHc
Q 004141 538 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDV--LTAIDHVIDM 610 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~---~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~--~~~~~~~~~D~--~~~i~~l~~~ 610 (771)
|+||++||++.......|... .+.+++.||.|+++|.++...+... ..... +........+. .+.+.++.++
T Consensus 30 ~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~ 108 (280)
T 1dqz_A 30 HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDW-YQPSQSNGQNYTYKWETFLTREMPAWLQAN 108 (280)
T ss_dssp SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSBC-SSSCTTTTCCSCCBHHHHHHTHHHHHHHHH
T ss_pred CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccCC-CCCCccccccccccHHHHHHHHHHHHHHHH
Confidence 589999997531113344432 3567788999999998864333211 00000 00011223332 2334444443
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc--C-----CCCCcchhhhhccCCCCccCCCCC
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG--T-----TDIPDWCYVESYGSKGKDSFTESP 683 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~ 683 (771)
..+++++++|+|+||||++|+.++.++|++|+++++.+|..+...... . .+...+.....++. +
T Consensus 109 ~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~ 179 (280)
T 1dqz_A 109 KGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWGP---------S 179 (280)
T ss_dssp HCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHHHHHHHHHHTTSCCHHHHHCS---------T
T ss_pred cCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcchhhhHHHHhhhccCcCHHHhcCC---------C
Confidence 346778999999999999999999999999999999999875432100 0 00000000001111 1
Q ss_pred ChhhHHHHhhcCcccccCCC---CCcEEEEeeCCCC--------------ccCcHHHHHHHHHHHhCC-CCEEEEEeCCC
Q 004141 684 SVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQYARALREKG-VETKVIVFPND 745 (771)
Q Consensus 684 ~~~~~~~~~~~sp~~~~~~i---~~P~lii~G~~D~--------------~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~ 745 (771)
. ...+...+|...+.++ .+|+++.+|+.|. .++.+++++++++|+++| +++++.+++++
T Consensus 180 ~---~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~~~g~~~~~~~~~~~g 256 (280)
T 1dqz_A 180 S---DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNG 256 (280)
T ss_dssp T---SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCC
T ss_pred C---chhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHHhCCCCceEEEecCCC
Confidence 1 1245556776555444 5899999999997 578899999999999999 99999999888
Q ss_pred CccCCCCCChHHHHHHHHHHHHHhh
Q 004141 746 VHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+|.+. .....+...+.||.+.|
T Consensus 257 ~H~~~---~w~~~l~~~l~~l~~~l 278 (280)
T 1dqz_A 257 THSWP---YWNEQLVAMKADIQHVL 278 (280)
T ss_dssp CSSHH---HHHHHHHHTHHHHHHHH
T ss_pred ccChH---HHHHHHHHHHHHHHHHh
Confidence 99752 12345567777877765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=153.17 Aligned_cols=281 Identities=6% Similarity=-0.019 Sum_probs=172.1
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..++||++|++..... .. ......++.++.. .++..+....+ .....++|||||+++++..... ..++
T Consensus 47 ~~s~dg~~l~~~~~~~-~~-~~~~~~v~~~d~~--~~~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~---~~v~ 114 (353)
T 3vgz_A 47 AYSQQENALWLATSQS-RK-LDKGGVVYRLDPV--TLEVTQAIHND-----LKPFGATINNTTQTLWFGNTVN---SAVT 114 (353)
T ss_dssp EEETTTTEEEEEECCC-TT-TEESEEEEEECTT--TCCEEEEEEES-----SCCCSEEEETTTTEEEEEETTT---TEEE
T ss_pred EECCCCCEEEEEcCCC-cC-CCCCccEEEEcCC--CCeEEEEEecC-----CCcceEEECCCCCEEEEEecCC---CEEE
Confidence 4567998886554321 11 1124578887653 22332222111 2356789999999887665432 3566
Q ss_pred EEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 128 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
.++ ..++....+..................+.|||||++|++....
T Consensus 115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--------------------------------- 161 (353)
T 3vgz_A 115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG--------------------------------- 161 (353)
T ss_dssp EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES---------------------------------
T ss_pred EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC---------------------------------
Confidence 666 5555555555432110000000012468999999987775321
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 207 DWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
....|+++|+.+++.... .+ ....+..++|+|||+. |++.. ....|+.+
T Consensus 162 ---------~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~----l~~~~---------------~~~~i~~~ 211 (353)
T 3vgz_A 162 ---------KESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKR----LYTTN---------------ADGELITI 211 (353)
T ss_dssp ---------SSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTE----EEEEC---------------TTSEEEEE
T ss_pred ---------CCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCE----EEEEc---------------CCCeEEEE
Confidence 136799999999887665 33 3334678899999997 76654 23478899
Q ss_pred ecccccchhhhhhhhcCCCCCCccee-cCC----CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLPVVN-LTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~----~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ .+++... +.. .........|||||++|+..... ...|+++|+.+++
T Consensus 212 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~v~~~d~~~~~ 264 (353)
T 3vgz_A 212 DT-----------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK----------AAEVLVVDTRNGN 264 (353)
T ss_dssp ET-----------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS----------SSEEEEEETTTCC
T ss_pred EC-----------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC----------CCEEEEEECCCCc
Confidence 97 5555432 222 12234568999999988665533 2569999987765
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL 440 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~ 440 (771)
.... +... ....++|+|||++|+++...+ ..|+.+|+.++++..............|
T Consensus 265 ~~~~----------~~~~-----------~~~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 321 (353)
T 3vgz_A 265 ILAK----------VAAP-----------ESLAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPTHPNSLAL 321 (353)
T ss_dssp EEEE----------EECS-----------SCCCEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred EEEE----------EEcC-----------CCceEEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCCCCCeEEE
Confidence 4211 1110 123578999999887765433 4678889988887765544444556789
Q ss_pred eecCCEEEEEEeC
Q 004141 441 TLDGDNIIAVSSS 453 (771)
Q Consensus 441 s~dg~~l~~~~~~ 453 (771)
++||+.|+++...
T Consensus 322 s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 322 SADGKTLYVSVKQ 334 (353)
T ss_dssp CTTSCEEEEEEEC
T ss_pred cCCCCEEEEEEcc
Confidence 9999988888766
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=160.64 Aligned_cols=218 Identities=17% Similarity=0.135 Sum_probs=132.3
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... ......++++.+.+..+++.-. ..+
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~l~-~~~ 73 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRK----IEELRTLYDYTLPLMELMESLS-ADE 73 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCC----GGGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCC---CCCCccC----cccccCHHHHHHHHHHHHHHhc-cCC
Confidence 4789999997754 3467788899989999999999999 5544211 0111245666655555555421 136
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh---------hhhcCCCCCcchh--hhhccCC-----------
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---------LMVGTTDIPDWCY--VESYGSK----------- 674 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~---------~~~~~~~~~~~~~--~~~~~~~----------- 674 (771)
++.|+||||||.+++.++.++|++++++|+.++..... .+........|.. ...+...
T Consensus 74 ~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (273)
T 1xkl_A 74 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 153 (273)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred CEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccCH
Confidence 89999999999999999999999999999887642100 0000000000000 0000000
Q ss_pred -CC-ccCCCCCChhhHHH---HhhcC-----------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 675 -GK-DSFTESPSVEDLTR---FHSKS-----------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 675 -~~-~~~~~~~~~~~~~~---~~~~s-----------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.. ..+......+.... +.... ........++|+|+++|++|..+|++.++.+.+.+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p~----~~ 229 (273)
T 1xkl_A 154 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----TE 229 (273)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----SE
T ss_pred HHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhcccccchhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCCC----Ce
Confidence 00 00000000010000 00000 0000011368999999999999999988888877643 58
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++++||..... ...++.+.+.+|+++.
T Consensus 230 ~~~i~~aGH~~~~e-~P~~~~~~i~~fl~~~ 259 (273)
T 1xkl_A 230 AIEIKGADHMAMLC-EPQKLCASLLEIAHKY 259 (273)
T ss_dssp EEEETTCCSCHHHH-SHHHHHHHHHHHHHHC
T ss_pred EEEeCCCCCCchhc-CHHHHHHHHHHHHHHh
Confidence 89999999986643 3457888999999764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.4e-16 Score=179.93 Aligned_cols=268 Identities=9% Similarity=0.103 Sum_probs=168.5
Q ss_pred EeCCCCCeEEEEecCCCC-CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 105 VPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
..+|||++++|+++..+. ...+|.+. .++..+.+++...-..+. ...+..++|||||++|||......
T Consensus 78 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDg~~la~~~~~~G------- 147 (710)
T 2xdw_A 78 CHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG---TVALRGYAFSEDGEYFAYGLSASG------- 147 (710)
T ss_dssp CCEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTS---CEEEEEEEECTTSSEEEEEEEETT-------
T ss_pred CCEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCC---CEEEEEEEECCCCCEEEEEEcCCC-------
Confidence 345999999999876532 34678877 566666666542211100 012368999999999999876431
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
....+|+++|+++|+...+ +.....+..++|||||+. |+|++
T Consensus 148 --------------------------------~~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~----l~~~~ 189 (710)
T 2xdw_A 148 --------------------------------SDWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNA 189 (710)
T ss_dssp --------------------------------CSCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEE
T ss_pred --------------------------------CceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCE----EEEEE
Confidence 1235899999999998775 223333668999999999 99988
Q ss_pred ecCcce-eeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCC---CccccceeecCCCCEEEEEec
Q 004141 263 WSSETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 263 ~~~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~---~~~~~~p~~SpDG~~l~f~~~ 336 (771)
...... ..+.....++..+||++++ .++.. +.+... .....++.|||||++|+|.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 190 YPQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp CCCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred ECCccccccccccccCCCCEEEEEEC-----------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 543210 0011111234568999998 55442 222222 233568999999999999987
Q ss_pred CCCCCCCCccccccceeeecCC------CC--CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 337 KSSVDSGAHSATDSLHRIDWPT------NG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~------~~--~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
+.. ....+||++|+.+ +. .+.++... + .....|++||+.|+|.++
T Consensus 253 ~~~------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-----------~----------~~~~~~s~dg~~l~~~s~ 305 (710)
T 2xdw_A 253 EGC------DPVNRLWYCDLQQESNGITGILKWVKLIDNF-----------E----------GEYDYVTNEGTVFTFKTN 305 (710)
T ss_dssp CSS------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-----------S----------SCEEEEEEETTEEEEEEC
T ss_pred ccC------CCccEEEEEECcccccccCCccceEEeeCCC-----------C----------cEEEEEeccCCEEEEEEC
Confidence 531 1146899999876 32 22221110 0 012258999999999887
Q ss_pred eCC-eeEEEEEECCCCc---EEEecCCCC--CceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 409 WGS-SQVIISVNVSSGE---LLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 409 ~~~-~~~l~~~d~~tg~---~~~l~~~~~--~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+. ...|+.+++++++ .+.++.... .+....++ +++.++++.... ...+|++.++.
T Consensus 306 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~-g~~~l~~~~~~ 367 (710)
T 2xdw_A 306 RHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHD-VKNTLQLHDLA 367 (710)
T ss_dssp TTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEEC-CEEEEEEEECC
Confidence 543 5689999998874 366665543 23334455 466777666443 34567877763
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-16 Score=160.15 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=79.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..++....-++ ..|.||++||++.......+ ...+...||.|+++|+|| +|.+... .......
T Consensus 23 ~g~~l~~~~~g~~------~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 87 (317)
T 1wm1_A 23 DGHRIYWELSGNP------NGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRG---CGRSRPH---ASLDNNT 87 (317)
T ss_dssp SSCEEEEEEEECT------TSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTT---STTCBST---TCCTTCS
T ss_pred CCcEEEEEEcCCC------CCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCC---CCCCCCC---ccccccc
Confidence 5677765544321 23669999997654322111 223445799999999999 5554321 1111233
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++..
T Consensus 88 ~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 140 (317)
T 1wm1_A 88 TWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 140 (317)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCC
Confidence 55666666666665 345689999999999999999999999999999987653
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-17 Score=166.02 Aligned_cols=216 Identities=16% Similarity=0.155 Sum_probs=130.2
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|+||++||.+.. ...|...+..|.++||.|+++|+||.+..... .........+++.+.+..+++. ++.
T Consensus 23 ~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (279)
T 4g9e_A 23 EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDA-----IDPDRSYSMEGYADAMTEVMQQ--LGI 93 (279)
T ss_dssp CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTTSTTSCCC-----SCHHHHSSHHHHHHHHHHHHHH--HTC
T ss_pred CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCCCCCCCCC-----CCcccCCCHHHHHHHHHHHHHH--hCC
Confidence 46889999998765 44677788887778999999999995443211 0011122455666666555554 244
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCC-ccchhhhh-cCCCCCcchh----------hhhccCCCCccCCCCC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP-LCNLALMV-GTTDIPDWCY----------VESYGSKGKDSFTESP 683 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p-~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 683 (771)
++++|+|||+||.+++.++.++|+ +.++|+.++ ........ .......... ...+.. ..+....
T Consensus 94 ~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 169 (279)
T 4g9e_A 94 ADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYAR---STCGEPF 169 (279)
T ss_dssp CCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHH---HHHCSSC
T ss_pred CceEEEEECchHHHHHHHHhhCCc-ceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHHHHHH---hhccCcc
Confidence 689999999999999999999999 555555444 33221110 0000000000 000000 0000000
Q ss_pred ChhhHHHHh------------------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHH-HHHHhCCCCEEEEEeCC
Q 004141 684 SVEDLTRFH------------------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYA-RALREKGVETKVIVFPN 744 (771)
Q Consensus 684 ~~~~~~~~~------------------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~-~~l~~~g~~~~~~~~~~ 744 (771)
.......+. ..+....+.++++|+|+++|++|..+|++....++ +.+. +++++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~~~~~~~ 245 (279)
T 4g9e_A 170 EASLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEAQLPIAVVNGRDEPFVELDFVSKVKFGNLW----EGKTHVIDN 245 (279)
T ss_dssp CHHHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHCCSCEEEEEETTCSSBCHHHHTTCCCSSBG----GGSCEEETT
T ss_pred cHHHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhcCCCEEEEEcCCCcccchHHHHHHhhccCC----CCeEEEECC
Confidence 000000010 11222335678999999999999999988777665 3332 367889999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHh
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+||.+.. +...++.+.+.+||++.
T Consensus 246 ~gH~~~~-~~p~~~~~~i~~fl~~~ 269 (279)
T 4g9e_A 246 AGHAPFR-EAPAEFDAYLARFIRDC 269 (279)
T ss_dssp CCSCHHH-HSHHHHHHHHHHHHHHH
T ss_pred CCcchHH-hCHHHHHHHHHHHHHHh
Confidence 9998553 44567888999999875
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-16 Score=161.67 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=82.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++...- ..|+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+..... .......
T Consensus 19 ~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~~-~~~~~~~ 84 (328)
T 2cjp_A 19 NGLNMHLAELG--------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRG---YGDTTGAPL-NDPSKFS 84 (328)
T ss_dssp TTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTCBCCCT-TCGGGGS
T ss_pred CCcEEEEEEcC--------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCC---CCCCCCcCc-CCccccc
Confidence 56677655431 23789999997765 4468888889988999999999999 555432100 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
++++.+.+..+++.-..+.+++.|+||||||.+++.+|.++|++++++|+.++.
T Consensus 85 ~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 85 ILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 444444443333331112578999999999999999999999999999998753
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-17 Score=178.08 Aligned_cols=242 Identities=17% Similarity=0.212 Sum_probs=142.7
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-chHHHH---HHHHCCcEEEEECCCCCCCCChhhhhcC-C--C
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSL-P--G 590 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~~~~~---~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~--~ 590 (771)
|.++++..+.+. ...+.|+||++||.+.+..... |...+. .|...||.|+++|+||+ ++|.+..... + +
T Consensus 93 g~~l~y~~~G~~---~~~~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~ 168 (444)
T 2vat_A 93 DVPVAYKSWGRM---NVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAE 168 (444)
T ss_dssp EEEEEEEEESCC---CTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC
T ss_pred ceeEEEEEecCC---CCCCCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCCcccc
Confidence 445554444332 2234588999999776643211 544443 46578999999999994 1333321000 0 0
Q ss_pred C---c----cccchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----
Q 004141 591 K---V----GSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----- 657 (771)
Q Consensus 591 ~---~----~~~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~----- 657 (771)
. + ....++|+.+.+..+++. ++.++ ++|+||||||.+++.++.++|++++++|+.++........
T Consensus 169 ~~~~~~~~f~~~t~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~~~~~~~~~~~ 246 (444)
T 2vat_A 169 GQRPYGAKFPRTTIRDDVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCRQSGWCAAWFE 246 (444)
T ss_dssp --CBCGGGCCCCCHHHHHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSBCCHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEeccccCCccchhHHH
Confidence 0 1 123566666666666654 23467 9999999999999999999999999999998865421000
Q ss_pred ----cCCCCCcch------------------------------hhhhccCCCCc-c----------------------CC
Q 004141 658 ----GTTDIPDWC------------------------------YVESYGSKGKD-S----------------------FT 680 (771)
Q Consensus 658 ----~~~~~~~~~------------------------------~~~~~~~~~~~-~----------------------~~ 680 (771)
.....+.|. +...+...... . +.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (444)
T 2vat_A 247 TQRQCIYDDPKYLDGEYDVDDQPVRGLETARKIANLTYKSKPAMDERFHMAPGVQAGRNISSQDAKKEINGTDSGNSHRA 326 (444)
T ss_dssp HHHHHHHHSTTSGGGTCCTTSCCHHHHHHHHHHHHHHTSCHHHHHHHSCCCCCCC-------------------------
T ss_pred HHHHHHhcCCccccccccccCCcccchhHHHhhhhccccChHHHHHHhccCccccccccccccccccccccccccccccc
Confidence 000000000 00011110000 0 00
Q ss_pred CCC--ChhhH---------------------HHHhhc--------CcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 681 ESP--SVEDL---------------------TRFHSK--------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 681 ~~~--~~~~~---------------------~~~~~~--------sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
... ..+.. ..+... +....+.++++|+|+++|++|..+|++.++++.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~i~~PvLvi~G~~D~~~p~~~~~~l~~~ 406 (444)
T 2vat_A 327 GQPIEAVSSYLRYQAQKFAASFDANCYIAMTLKFDTHDISRGRAGSIPEALAMITQPALIICARSDGLYSFDEHVEMGRS 406 (444)
T ss_dssp --CGGGHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTCBTTTTTCSSHHHHHTTCCSCEEEEECTTCSSSCHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHhhccCccHHHHHHHHhhhhhccccccccHHHHhhcCCCCEEEEEeCCCCCCCHHHHHHHHHH
Confidence 000 00000 000000 13345678999999999999999999988888877
Q ss_pred HHhCCCCEEEEEeC-CCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 730 LREKGVETKVIVFP-NDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 730 l~~~g~~~~~~~~~-~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+.. +++++++ ++||..... ...++.+.|.+||++++
T Consensus 407 ~p~----~~~~~i~~~~GH~~~~e-~p~~~~~~i~~fL~~~l 443 (444)
T 2vat_A 407 IPN----SRLCVVDTNEGHDFFVM-EADKVNDAVRGFLDQSL 443 (444)
T ss_dssp STT----EEEEECCCSCGGGHHHH-THHHHHHHHHHHHTC--
T ss_pred CCC----cEEEEeCCCCCcchHHh-CHHHHHHHHHHHHHHhc
Confidence 653 7999999 899986543 35578889999998765
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=160.17 Aligned_cols=218 Identities=14% Similarity=0.060 Sum_probs=130.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... ......++++.+.+..+++.-. ..+
T Consensus 3 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~l~-~~~ 72 (257)
T 3c6x_A 3 FAHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQ----IEEIGSFDEYSEPLLTFLEALP-PGE 72 (257)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCC----GGGCCSHHHHTHHHHHHHHTSC-TTC
T ss_pred CCcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCC---CCCCCCC----cccccCHHHHHHHHHHHHHhcc-ccC
Confidence 3679999997754 3468888999999999999999999 5544210 0111235555555555555421 136
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch-----h----hhhc-CCCC-Ccch-hhh---------hccCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-----A----LMVG-TTDI-PDWC-YVE---------SYGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~-----~----~~~~-~~~~-~~~~-~~~---------~~~~~~ 675 (771)
++.|+||||||.+++.++.++|++++++|+.++.... . .+.. .... ..+. ... ......
T Consensus 73 ~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T 3c6x_A 73 KVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTL 152 (257)
T ss_dssp CEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred CeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHH
Confidence 8999999999999999999999999999988764210 0 0000 0000 0000 000 000000
Q ss_pred C-ccCCCCCChhhHHHHh-hcCc-------------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 676 K-DSFTESPSVEDLTRFH-SKSP-------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 676 ~-~~~~~~~~~~~~~~~~-~~sp-------------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
. ..+............. ...+ .......++|+|+++|++|..+|++.++.+.+.+. +.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~----~~~~~ 228 (257)
T 3c6x_A 153 LRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVY 228 (257)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEE
T ss_pred HHHHHhcCCCHHHHHHHHHhcCCCccchhhhccccccChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCC----CCeEE
Confidence 0 0000000111101000 0001 00001126899999999999999998888877664 36899
Q ss_pred EeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 741 VFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 741 ~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++++||.... +...++.+.+.+|++++
T Consensus 229 ~i~~~gH~~~~-e~P~~~~~~l~~f~~~~ 256 (257)
T 3c6x_A 229 KVEGGDHKLQL-TKTKEIAEILQEVADTY 256 (257)
T ss_dssp ECCSCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCccc-CCHHHHHHHHHHHHHhc
Confidence 99999998653 34457888899998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=165.15 Aligned_cols=248 Identities=11% Similarity=0.063 Sum_probs=157.4
Q ss_pred cceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
....|++ ||++|||+....+ ....+|+++ .+++.+++ ... ..+.|||||++|||.+..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~----------~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENA----------TMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESC----------EEEEECTTSSEEEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccC----------CCeEECCCCCEEEEEEec
Confidence 3567888 9999999875421 234577776 55555444 222 589999999999998754
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
.. ....+||++|+++++.+.+ +.... +..+.|||||+.
T Consensus 80 ~~---------------------------------------~~~~~l~~~~~~~g~~~~l--~~~~~-~~~~~wspdg~~ 117 (347)
T 2gop_A 80 EE---------------------------------------KKVSEIWVADLETLSSKKI--LEAKN-IRSLEWNEDSRK 117 (347)
T ss_dssp TT---------------------------------------TTEEEEEEEETTTTEEEEE--EEESE-EEEEEECTTSSE
T ss_pred cC---------------------------------------CCcceEEEEECCCCceEEE--EcCCC-ccceeECCCCCE
Confidence 21 0236899999999998888 33333 788999999999
Q ss_pred CccEEEEEeecCcce-------e-----eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcccc
Q 004141 254 LHQYLVFVGWSSETR-------K-----LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 320 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~-------~-----~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~ 320 (771)
|+|.+...... + .|..+......+||++|+ .+++. +.|+. . .+.
T Consensus 118 ----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~-----------------~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 118 ----LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT-----------------ESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp ----EEEEEECCCC---------CCCC---------CEEEEEEEET-----------------TTTEEEEEEEE-E-TTC
T ss_pred ----EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC-----------------CCCeEEeeecC-C-Ccc
Confidence 99987531000 0 010011112358999998 77777 77776 4 778
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccc-cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~D 399 (771)
.+.||||| |+|.+..... ..... ..+||++| +++.+.++.. . .. ..+|||
T Consensus 175 ~~~~spdg--~~~~~~~~~~--~~~~~~~~~l~~~d--~~~~~~l~~~-~--------------------~~--~~~spd 225 (347)
T 2gop_A 175 SGIWHRDK--IVVNVPHREI--IPQYFKFWDIYIWE--DGKEEKMFEK-V--------------------SF--YAVDSD 225 (347)
T ss_dssp EEEEETTE--EEEEEECCCS--SCCSSCCEEEEEEE--TTEEEEEEEE-E--------------------SE--EEEEEC
T ss_pred cccCCCCe--EEEEEecccc--cccccccccEEEeC--CCceEEeccC-c--------------------ce--eeECCC
Confidence 89999999 7777754310 00001 45789988 4443333221 0 01 124999
Q ss_pred CCEEEEEeeeC-----CeeEEEEEECCCCcEEEecCCC-CCcee-eEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 400 GCTMLLSSIWG-----SSQVIISVNVSSGELLRITPAE-SNFSW-SLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 400 g~~l~~~~~~~-----~~~~l~~~d~~tg~~~~l~~~~-~~~~~-~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
|+.|++.+... ....||.+| +++.+.++... ..+.. ..|+ |+ ++++.+... ..+|| .+
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~ 290 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW 290 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec
Confidence 99998887543 246899999 78888887653 33333 5677 66 555554333 34566 55
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-15 Score=157.89 Aligned_cols=243 Identities=14% Similarity=0.110 Sum_probs=163.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....++|||||++|++....+ ..+..++ ..++..+.+.....+ ..++|||||++|++....
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~----- 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CcceEEECCCCCEEEEECCCC---CeEEEEECCCCeEEEEEECCCCc----------cceEECCCCCEEEEEECC-----
Confidence 467899999999987665332 2344434 455555555443333 589999999999886422
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|++||+.+++.... ......+..++|+|||+. |
T Consensus 95 --------------------------------------~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 130 (391)
T 1l0q_A 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (391)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------CCEEEEEECCCCeEEEE--EeCCCCcceEEECCCCCE----E
Confidence 26799999999987666 444556788999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++++. ....|+++|+ .+++...............|+|||+.|++....+
T Consensus 131 ~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred EEEeC--------------CCCEEEEEEC-----------------CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC
Confidence 76652 2347999998 6665544433344567899999999887665442
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|+++|+.+++...... . . ..+..++|+|||+.|++.........|+.+
T Consensus 180 ----------~~v~~~d~~~~~~~~~~~----------~---~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 180 ----------MSISVIDTVTNSVIDTVK----------V---E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp ----------TEEEEEETTTTEEEEEEE----------C---S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------CEEEEEECCCCeEEEEEe----------c---C-------CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 469999988765321110 0 0 013456899999988877653345678888
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|+.+++...............++++++.++++.+.. ..+.+.++.++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 998887665544444445568899999887776432 56777776544
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=161.57 Aligned_cols=245 Identities=14% Similarity=0.105 Sum_probs=149.4
Q ss_pred cccccCCCce--EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--CCC----------------cch-HHHHHH-HHCCcE
Q 004141 511 ANLTKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLS----------------SYS-KSLAFL-SSVGYS 568 (771)
Q Consensus 511 ~~~~~~~g~~--l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~--~~~----------------~~~-~~~~~l-a~~G~~ 568 (771)
+.+++.+|.+ ..+.++.|.+. ..+.|+|.|-||..+.. +.. .+. ..+..+ +++||+
T Consensus 80 Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~~l~~G~~ 157 (462)
T 3guu_A 80 YRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGWALQQGYY 157 (462)
T ss_dssp EEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHHHHhCCCE
Confidence 3455666765 78899999863 23589999999944321 111 111 245566 899999
Q ss_pred EEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC-CCCeEEEEEcChhHHHHHHHHhhC----CC-cee
Q 004141 569 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQA----PD-KFV 642 (771)
Q Consensus 569 Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~ri~l~G~S~GG~~a~~~a~~~----p~-~~~ 642 (771)
|+++||+|.+ ..+. .+.....++.++++.+.....+ ...+++++|||+||..+++++... |+ .++
T Consensus 158 Vv~~Dy~G~G---~~y~------~~~~~~~~vlD~vrAa~~~~~~~~~~~v~l~G~S~GG~aal~aa~~~~~yapel~~~ 228 (462)
T 3guu_A 158 VVSSDHEGFK---AAFI------AGYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNIV 228 (462)
T ss_dssp EEEECTTTTT---TCTT------CHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred EEEecCCCCC---Cccc------CCcchhHHHHHHHHHHHHhccCCCCCCEEEEeeCccHHHHHHHHHhChhhcCccceE
Confidence 9999999954 3221 1111122334444443333223 247999999999999999887754 33 588
Q ss_pred EEEecCCccchhhhhcCCCCC------------------c----------------------c--hhhhh---cc-CCCC
Q 004141 643 AAAARNPLCNLALMVGTTDIP------------------D----------------------W--CYVES---YG-SKGK 676 (771)
Q Consensus 643 ~~v~~~p~~~~~~~~~~~~~~------------------~----------------------~--~~~~~---~~-~~~~ 676 (771)
+++..++..++.......+.. + . |..+. +. ....
T Consensus 229 g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~~~~~~~~~ 308 (462)
T 3guu_A 229 GASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVLTYPFLNVF 308 (462)
T ss_dssp EEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHHHCTTCCGG
T ss_pred EEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHHhhccCCHH
Confidence 899988888764332110000 0 0 10000 00 0000
Q ss_pred ccCCCCCC---hhhHHHHhhcCccc-----ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 677 DSFTESPS---VEDLTRFHSKSPIS-----HISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 677 ~~~~~~~~---~~~~~~~~~~sp~~-----~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..+.+... ......+.+.+.-. -..+.++|+||+||.+|++||+++++++++++++.|.+++++.|++++|.
T Consensus 309 ~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~G~~V~~~~y~~~~H~ 388 (462)
T 3guu_A 309 SLVNDTNLLNEAPIASILKQETVVQAEASYTVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAKGANINFSPYPIAEHL 388 (462)
T ss_dssp GGBSCTTGGGSTTHHHHHHHSBCCTTTCSSCCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEESSCCHH
T ss_pred HHcCCCccccCHHHHHHHHhhcccccccccCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCeEEEEECcCCcc
Confidence 01110000 00111111111101 12456799999999999999999999999999999999999999999997
Q ss_pred CCCCCChHHHHHHHHHHHHHhh
Q 004141 749 IERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 749 ~~~~~~~~~~~~~i~~fl~~~L 770 (771)
... ...+..+++||++++
T Consensus 389 ~~~----~~~~~d~l~WL~~r~ 406 (462)
T 3guu_A 389 TAE----IFGLVPSLWFIKQAF 406 (462)
T ss_dssp HHH----HHTHHHHHHHHHHHH
T ss_pred Cch----hhhHHHHHHHHHHHh
Confidence 642 234678999999876
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=157.71 Aligned_cols=228 Identities=16% Similarity=0.193 Sum_probs=133.3
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|..+++...- ..|.||++||.+.+ ...|...+..|++. |.|+++|+|| +|.+... ........
T Consensus 16 ~~g~~l~y~~~G--------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~-~~~~~~~~ 80 (294)
T 1ehy_A 16 LPDVKIHYVREG--------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRG---FGDSEKP-DLNDLSKY 80 (294)
T ss_dssp CSSCEEEEEEEE--------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTT---STTSCCC-CTTCGGGG
T ss_pred ECCEEEEEEEcC--------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCC---CCCCCCC-ccccccCc
Confidence 356777655432 23679999998765 45788888888765 9999999999 5555321 00000123
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccc-hh-hhhcCC-CCCcch------
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LA-LMVGTT-DIPDWC------ 666 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~-~~-~~~~~~-~~~~~~------ 666 (771)
.++++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++... .. ...... ....|.
T Consensus 81 ~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (294)
T 1ehy_A 81 SLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQL 158 (294)
T ss_dssp CHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTC
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCCCCCcchhhccchhccCceEEEecCc
Confidence 456666666666655 2356899999999999999999999999999999886321 10 000000 000010
Q ss_pred -hh---------------hhccCCCCccCCCCCChhhHHHHh-----------------hc--Cccc-----ccCCCCCc
Q 004141 667 -YV---------------ESYGSKGKDSFTESPSVEDLTRFH-----------------SK--SPIS-----HISKVKTP 706 (771)
Q Consensus 667 -~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--sp~~-----~~~~i~~P 706 (771)
.. ..+....... ......+....+. .. .... .+.++++|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 237 (294)
T 1ehy_A 159 DMAVEVVGSSREVCKKYFKHFFDHWSYR-DELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLP 237 (294)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSSS-SCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSC
T ss_pred chhHHHhccchhHHHHHHHHHhhcccCC-CCCCCHHHHHHHHHHhcCCcccchHHHHHHHHHhhhhhhcCCcccCcCCCC
Confidence 00 0000000000 0000111111110 00 0001 23378999
Q ss_pred EEEEeeCCCCccCc-HHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 707 TIFLLGAQDLRVPV-SNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 707 ~lii~G~~D~~vp~-~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
+|+++|++|..+|. .....+.+.+ ...++++++++||..... ...++.+.+.+||
T Consensus 238 ~Lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl 293 (294)
T 1ehy_A 238 VTMIWGLGDTCVPYAPLIEFVPKYY----SNYTMETIEDCGHFLMVE-KPEIAIDRIKTAF 293 (294)
T ss_dssp EEEEEECCSSCCTTHHHHHHHHHHB----SSEEEEEETTCCSCHHHH-CHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCcchHHHHHHHHHHc----CCCceEEeCCCCCChhhh-CHHHHHHHHHHHh
Confidence 99999999999884 4444544433 348999999999976533 3446777777775
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-17 Score=171.39 Aligned_cols=221 Identities=12% Similarity=0.112 Sum_probs=131.5
Q ss_pred CCcEEEEEcCCCCCCCC---Ccch-----------HHHHHHHHCCcEEEEECCCCCCCCChhhhhcC--CC---Ccc-cc
Q 004141 536 CDPLIVVLHGGPHSVSL---SSYS-----------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--PG---KVG-SQ 595 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~---~~~~-----------~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~--~~---~~~-~~ 595 (771)
+.|+||++||++..... ..|. ..+..|+++||.|+++|+||. |.+..... .. .+. ..
T Consensus 49 ~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~---G~s~~~~~~~~~~~~~~~~~~ 125 (354)
T 2rau_A 49 GNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTH---YVPPFLKDRQLSFTANWGWST 125 (354)
T ss_dssp CEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGG---GCCTTCCGGGGGGGTTCSHHH
T ss_pred CCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCC---CCCCcccccccccccCCcHHH
Confidence 46899999997765320 0222 577889999999999999994 43321100 00 111 22
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchhhhhc-C--C-----------
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLALMVG-T--T----------- 660 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~~~~~-~--~----------- 660 (771)
.++|+.++++++.++ .+.++++++|||+||.+++.++.++ |++++++|+.++......... . .
T Consensus 126 ~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (354)
T 2rau_A 126 WISDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGGPTKHGIRPKFYTPEVNSIEEMEAK 203 (354)
T ss_dssp HHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCSCBCTTCC--CCCCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecccccccCcccchhhhhhhhHHHhhhh
Confidence 257888888888765 3457899999999999999999998 999999999865422100000 0 0
Q ss_pred ---------CCC------------------------cchhhhhccCCCCccCC-CCCChhhHH-HH------------hh
Q 004141 661 ---------DIP------------------------DWCYVESYGSKGKDSFT-ESPSVEDLT-RF------------HS 693 (771)
Q Consensus 661 ---------~~~------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~------------~~ 693 (771)
... .|.....+.......+. ......... .+ ..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (354)
T 2rau_A 204 GIYVIPSRGGPNNPIWSYALANPDMPSPDPKYKSISDFLMDSLYVTGSANPYDYPYSKKEDMFPILASFDPYWPYRLSLE 283 (354)
T ss_dssp TCCEEECSSSTTCTHHHHHHHSTTSCCSSTTSSSHHHHHHHHHHHTTSCCTTSTTCCCHHHHHHHHHTSCSEEEHHHHHT
T ss_pred cccccCCCchhhhHHHHHhccccccCccccchhhHHHHHHHhhhccccCCcccCCCccHHHHHHHHhhhccccccccccC
Confidence 000 00000000000000000 000001111 11 11
Q ss_pred cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC--CCChHHHHHHHHHHHHHh
Q 004141 694 KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER--PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 694 ~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~--~~~~~~~~~~i~~fl~~~ 769 (771)
.+....+.++++|+|+++|++|.++|. .++.+ ....++++++++||.... ++...++...+.+||+++
T Consensus 284 ~~~~~~l~~i~~P~Lii~G~~D~~~p~-~~~~l-------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~ 353 (354)
T 2rau_A 284 RDLKFDYEGILVPTIAFVSERFGIQIF-DSKIL-------PSNSEIILLKGYGHLDVYTGENSEKDVNSVVLKWLSQQ 353 (354)
T ss_dssp TTCCCCCTTCCCCEEEEEETTTHHHHB-CGGGS-------CTTCEEEEETTCCGGGGTSSTTHHHHTHHHHHHHHHHH
T ss_pred cccccccccCCCCEEEEecCCCCCCcc-chhhh-------ccCceEEEcCCCCCchhhcCCCcHHHHHHHHHHHHHhc
Confidence 223345668999999999999997763 22222 235799999999997643 344568889999999875
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=145.29 Aligned_cols=171 Identities=12% Similarity=0.126 Sum_probs=121.7
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
+.|.||++||.+.+.. ..|...+..+...+ +.++++| ++ ....+++.+.+..+++. .+
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~---~~v~~~~---~~------------~~~~~~~~~~~~~~~~~--~~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHW---QRIRQRE---WY------------QADLDRWVLAIRRELSV--CT- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTS---EECCCSC---CS------------SCCHHHHHHHHHHHHHT--CS-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCe---EEEeccC---CC------------CcCHHHHHHHHHHHHHh--cC-
Confidence 4588999999875531 24444444333333 4556666 21 12356666666666655 23
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 695 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 695 (771)
++++|+|||+||.+++.++.++|++++++|+.+|....... + +.
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~--------------~-----------~~----------- 117 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFE--------------I-----------DD----------- 117 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGT--------------C-----------TT-----------
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCcccccc--------------C-----------cc-----------
Confidence 78999999999999999999999999999999997643210 0 00
Q ss_pred cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHHhh
Q 004141 696 PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~~L 770 (771)
...+.++++|+|+++|++|..+|++.++.+.+.+ +.+++++++++|.+... ....+.++.+.+||++..
T Consensus 118 -~~~~~~~~~P~lii~g~~D~~~~~~~~~~~~~~~-----~~~~~~~~~~gH~~~~~~~~~~~~~~~~i~~fl~~~~ 188 (191)
T 3bdv_A 118 -RIQASPLSVPTLTFASHNDPLMSFTRAQYWAQAW-----DSELVDVGEAGHINAEAGFGPWEYGLKRLAEFSEILI 188 (191)
T ss_dssp -TSCSSCCSSCEEEEECSSBTTBCHHHHHHHHHHH-----TCEEEECCSCTTSSGGGTCSSCHHHHHHHHHHHHTTC
T ss_pred -ccccccCCCCEEEEecCCCCcCCHHHHHHHHHhc-----CCcEEEeCCCCcccccccchhHHHHHHHHHHHHHHhc
Confidence 0335678899999999999999999999988876 27899999999987542 133456688888887653
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=163.60 Aligned_cols=227 Identities=11% Similarity=0.063 Sum_probs=135.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.+++...+. ..|+||++||++.+ ...|...+..|++. |.|+++|+|| +|.+... ...
T Consensus 16 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~-----~~~ 76 (301)
T 3kda_A 16 EVDGVKLHYVKGG--------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPG---LGQSEPP-----KTG 76 (301)
T ss_dssp EETTEEEEEEEEE--------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTT---STTCCCC-----SSC
T ss_pred eeCCeEEEEEEcC--------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCC---CCCCCCC-----CCC
Confidence 3467778765543 34789999998765 34677788888877 9999999999 4444221 122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCe-EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC------CCCCcchh
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT------TDIPDWCY 667 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~r-i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~------~~~~~~~~ 667 (771)
...+++.+.+..+++. ++.++ +.|+||||||.+++.++.++|++++++|+.+|.......... .....|..
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (301)
T 3kda_A 77 YSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPIPDARIYRFPAFTAQGESLVWHF 154 (301)
T ss_dssp SSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCCSSGGGGGSBSEETTEECSSTHH
T ss_pred ccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCCCCCCccchhhhcchhhhhhhhH
Confidence 3455555555555544 23456 999999999999999999999999999999986321111000 00000100
Q ss_pred ---------hhhccC--------CCCccCCC---CCChhhHHHHhh-------------------------cCcccccCC
Q 004141 668 ---------VESYGS--------KGKDSFTE---SPSVEDLTRFHS-------------------------KSPISHISK 702 (771)
Q Consensus 668 ---------~~~~~~--------~~~~~~~~---~~~~~~~~~~~~-------------------------~sp~~~~~~ 702 (771)
...+.. ........ ....+....+.. ......+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (301)
T 3kda_A 155 SFFAADDRLAETLIAGKERFFLEHFIKSHASNTEVFSERLLDLYARSYAKPHSLNASFEYYRALNESVRQNAELAKTRLQ 234 (301)
T ss_dssp HHHHCSTTHHHHHHTTCHHHHHHHHHHHTCSSGGGSCHHHHHHHHHHHTSHHHHHHHHHHHHTHHHHHHHHHHHTTSCBC
T ss_pred HHhhcCcchHHHHhccchHHHHHHHHHhccCCcccCCHHHHHHHHHHhccccccchHHHHHHhhccchhhcccchhhccc
Confidence 000000 00000000 000111111000 000112238
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 703 i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+++|+|+++|++| +++.....+.+. -.++++++++++||.+.. +...++.+.|.+|+++.
T Consensus 235 i~~P~l~i~G~~D--~~~~~~~~~~~~----~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~~l~~~ 294 (301)
T 3kda_A 235 MPTMTLAGGGAGG--MGTFQLEQMKAY----AEDVEGHVLPGCGHWLPE-ECAAPMNRLVIDFLSRG 294 (301)
T ss_dssp SCEEEEEECSTTS--CTTHHHHHHHTT----BSSEEEEEETTCCSCHHH-HTHHHHHHHHHHHHTTS
T ss_pred cCcceEEEecCCC--CChhHHHHHHhh----cccCeEEEcCCCCcCchh-hCHHHHHHHHHHHHhhC
Confidence 8999999999999 665655554433 345899999999998753 34557788888888653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=175.50 Aligned_cols=270 Identities=13% Similarity=0.102 Sum_probs=168.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCC-CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+.++|||++++|+++..+. ...+|.+. .++..+.+++...-..+. .....+++|||||++|||......
T Consensus 70 ~~~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~---~~~~~~~~~SPDG~~la~~~~~~G--- 143 (695)
T 2bkl_A 70 DSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG---TVSLGTWAVSWDGKKVAFAQKPNA--- 143 (695)
T ss_dssp CEECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS---CEEEEEEEECTTSSEEEEEEEETT---
T ss_pred ccCCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC---CEEEEEEEECCCCCEEEEEECCCC---
Confidence 3455667999999999987632 45678887 567777777653211000 012368999999999999876431
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.....|+++|+++|+..... .........++|||||+. |
T Consensus 144 ------------------------------------~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~----l 182 (695)
T 2bkl_A 144 ------------------------------------ADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKG----F 182 (695)
T ss_dssp ------------------------------------CSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSE----E
T ss_pred ------------------------------------CceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCE----E
Confidence 13479999999999875110 111222368999999999 9
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCC---CccccceeecCCCCEEEE
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~---~~~~~~p~~SpDG~~l~f 333 (771)
+|++...... +.....++..+||++++ .++.. +.+... .....++.|||||++|++
T Consensus 183 ~~~~~d~~~~--~~~~~~~~~~~v~~~~l-----------------~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~ 243 (695)
T 2bkl_A 183 YYEWLPTDPS--IKVDERPGYTTIRYHTL-----------------GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFV 243 (695)
T ss_dssp EEEECCCCTT--SCGGGGGGGCEEEEEET-----------------TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEE
T ss_pred EEEEecCCCC--CccccCCCCCEEEEEEC-----------------CCCchhceEEEecCCCCEEEEEEEECCCCCEEEE
Confidence 9998543200 00011134558999998 55442 233322 235678999999999999
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-Ce
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SS 412 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~-~~ 412 (771)
.+.+.. ...+||+++..+++.+.++.... ....+.| +||+ |++.++.+ ..
T Consensus 244 ~~~~~~-------~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~~-~~g~-l~~~s~~~~~~ 294 (695)
T 2bkl_A 244 YILRGW-------SENDVYWKRPGEKDFRLLVKGVG--------------------AKYEVHA-WKDR-FYVLTDEGAPR 294 (695)
T ss_dssp EEEETT-------TEEEEEEECTTCSSCEEEEECSS--------------------CCEEEEE-ETTE-EEEEECTTCTT
T ss_pred EEeCCC-------CceEEEEEcCCCCceEEeecCCC--------------------ceEEEEe-cCCc-EEEEECCCCCC
Confidence 887641 25689999876655444332210 1122334 7888 88877644 46
Q ss_pred eEEEEEECCCCcE---EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 413 QVIISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 413 ~~l~~~d~~tg~~---~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
..|+.+|+++++. +.+...........++..++.++++... +...+|++.++.
T Consensus 295 ~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~-dg~~~l~~~~~~ 350 (695)
T 2bkl_A 295 QRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLK-DATSEVRVATLK 350 (695)
T ss_dssp CEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEE-TTEEEEEEEETT
T ss_pred CEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEE-CCEEEEEEEeCC
Confidence 7899999988763 6666543211222233346677766644 334668877753
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=162.90 Aligned_cols=220 Identities=16% Similarity=0.146 Sum_probs=131.8
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+...... ......++++.+.+..+++. ++.+
T Consensus 20 ~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~~~-~~~~~~~~~~a~dl~~~l~~--l~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVG---SGHSDLRAYD-LNRYQTLDGYAQDVLDVCEA--LDLK 90 (271)
T ss_dssp SSEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSC---CSSSCCTTCC-TTGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCC---CCCCCCCccc-ccccccHHHHHHHHHHHHHH--cCCC
Confidence 3789999997654 3456666777755 79999999999 4544211100 01112344444444444444 2457
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh----hhcCCCCCcc-hhhhhccC-------CCCcc-CCCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MVGTTDIPDW-CYVESYGS-------KGKDS-FTESP 683 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~----~~~~~~~~~~-~~~~~~~~-------~~~~~-~~~~~ 683 (771)
++.|+||||||.+++.++.++|++++++|+.++...... +......... ........ ..... +....
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999887521100 0000000000 00000000 00000 00000
Q ss_pred ChhhHH----H---------------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 684 SVEDLT----R---------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 684 ~~~~~~----~---------------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
...... . .........+.++++|+|+++|++|..+|++.++.+.+.+. ..+++++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 246 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLP----YSSLKQMEA 246 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSS----SEEEEEEEE
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCC----CCEEEEeCC
Confidence 000000 0 01112223467899999999999999999888777766554 378999999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+||..... ...++.+.+.+||++++
T Consensus 247 ~gH~~~~e-~p~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 247 RGHCPHMS-HPDETIQLIGDYLKAHV 271 (271)
T ss_dssp ESSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred CCcCcccc-CHHHHHHHHHHHHHhcC
Confidence 99976533 35578889999998764
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-16 Score=164.54 Aligned_cols=230 Identities=15% Similarity=0.082 Sum_probs=137.9
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|.+++...+. +.|+||++||++... ..|...+..|++ +|.|+++|+|| +|.+..... ......
T Consensus 15 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~~--~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~~-~~~~~~ 79 (297)
T 2qvb_A 15 IAGKRMAYIDEG--------KGDAIVFQHGNPTSS--YLWRNIMPHLEG-LGRLVACDLIG---MGASDKLSP-SGPDRY 79 (297)
T ss_dssp ETTEEEEEEEES--------SSSEEEEECCTTCCG--GGGTTTGGGGTT-SSEEEEECCTT---STTSCCCSS-CSTTSS
T ss_pred ECCEEEEEEecC--------CCCeEEEECCCCchH--HHHHHHHHHHhh-cCeEEEEcCCC---CCCCCCCCC-ccccCc
Confidence 357777655542 248899999977653 346666667755 59999999999 444421110 011113
Q ss_pred chhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC----------CCCc
Q 004141 596 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT----------DIPD 664 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~----------~~~~ 664 (771)
..+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|........... ..+.
T Consensus 80 ~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (297)
T 2qvb_A 80 SYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVTPMTWADWPPAVRGVFQGFRSPQ 157 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHTSTT
T ss_pred CHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccCCccCCCCChHHHHHHHHHhccc
Confidence 456666666555555 244 789999999999999999999999999999998865311000000 0000
Q ss_pred -c-------hhhhhc-c----CCC--------CccCCCC-CChhhHH-HHhhc--------------CcccccCCCCCcE
Q 004141 665 -W-------CYVESY-G----SKG--------KDSFTES-PSVEDLT-RFHSK--------------SPISHISKVKTPT 707 (771)
Q Consensus 665 -~-------~~~~~~-~----~~~--------~~~~~~~-~~~~~~~-~~~~~--------------sp~~~~~~i~~P~ 707 (771)
. .+...+ . ... ...+... ....... .+... +....+.++++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~ 237 (297)
T 2qvb_A 158 GEPMALEHNIFVERVLPGAILRQLSDEEMNHYRRPFVNGGEDRRPTLSWPRNLPIDGEPAEVVALVNEYRSWLEETDMPK 237 (297)
T ss_dssp HHHHHHTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHCCSCE
T ss_pred chhhhccccHHHHHHHhccccccCCHHHHHHHHHHhcCcccchhhHHHHHHhccccCCchhhHHHHHHHHhhcccccccE
Confidence 0 000000 0 000 0000000 0000000 01111 1123456789999
Q ss_pred EEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 708 lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
|+++|++|..+|++..+.+.+.+ .. +++++ ++||.+.. +...++.+.+.+||++.
T Consensus 238 lii~G~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~-~~p~~~~~~i~~fl~~~ 292 (297)
T 2qvb_A 238 LFINAEPGAIITGRIRDYVRSWP----NQ-TEITV-PGVHFVQE-DSPEEIGAAIAQFVRRL 292 (297)
T ss_dssp EEEEEEECSSSCHHHHHHHHTSS----SE-EEEEE-EESSCGGG-TCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCCHHHHHHHHHHc----CC-eEEEe-cCccchhh-hCHHHHHHHHHHHHHHH
Confidence 99999999999988777665544 23 78888 99998664 44568889999999875
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-15 Score=157.02 Aligned_cols=118 Identities=18% Similarity=0.278 Sum_probs=79.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++...-++ ..|.||++||+++...... ....+...||.|+++|+|| +|.+... .......
T Consensus 20 ~g~~l~y~~~G~~------~g~pvvllHG~~~~~~~~~---~~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~~ 84 (313)
T 1azw_A 20 DRHTLYFEQCGNP------HGKPVVMLHGGPGGGCNDK---MRRFHDPAKYRIVLFDQRG---SGRSTPH---ADLVDNT 84 (313)
T ss_dssp SSCEEEEEEEECT------TSEEEEEECSTTTTCCCGG---GGGGSCTTTEEEEEECCTT---STTSBST---TCCTTCC
T ss_pred CCCEEEEEecCCC------CCCeEEEECCCCCccccHH---HHHhcCcCcceEEEECCCC---CcCCCCC---ccccccc
Confidence 5667765544321 2366999999765432211 2233445799999999999 5554321 1111223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++..
T Consensus 85 ~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~ 137 (313)
T 1azw_A 85 TWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEecccc
Confidence 55666556666655 245689999999999999999999999999999987653
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.9e-16 Score=145.29 Aligned_cols=169 Identities=16% Similarity=0.094 Sum_probs=122.6
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCc---EEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|+||++||.+.. ...|...+..|+++|| .|+++|++|.+. +.. ...+++.+.+..+++. .
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g~g~---s~~---------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTG---TNY---------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTC---CHH---------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCCCCC---chh---------hhHHHHHHHHHHHHHH--c
Confidence 4779999997655 4467888899999998 699999999433 211 2345666666666554 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHH
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 691 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (771)
+.+++.++||||||.+++.++.++ |++++++|+.+|....... . .+ +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~------------~--------~~---~~------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG------------K--------AL---PG------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS------------B--------CC---CC-------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc------------c--------cC---CC-------
Confidence 457899999999999999999987 8899999999987542210 0 00 00
Q ss_pred hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 692 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 692 ~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
. ....++|+|+++|++|..+|++.++ -...+++++++++|.+.... . ++.+.+.+||++.
T Consensus 117 --~-----~~~~~~p~l~i~G~~D~~v~~~~~~---------~~~~~~~~~~~~gH~~~~~~-~-~~~~~i~~fl~~~ 176 (181)
T 1isp_A 117 --T-----DPNQKILYTSIYSSADMIVMNYLSR---------LDGARNVQIHGVGHIGLLYS-S-QVNSLIKEGLNGG 176 (181)
T ss_dssp --S-----CTTCCCEEEEEEETTCSSSCHHHHC---------CBTSEEEEESSCCTGGGGGC-H-HHHHHHHHHHTTT
T ss_pred --C-----CCccCCcEEEEecCCCccccccccc---------CCCCcceeeccCchHhhccC-H-HHHHHHHHHHhcc
Confidence 0 0123579999999999999987432 23468899999999876444 3 7888999998753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=175.07 Aligned_cols=270 Identities=12% Similarity=0.114 Sum_probs=170.1
Q ss_pred ceEEEeCCCCCeEEEEecCCCC-CCeEEEEe-c---CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENE-SPIQFELW-S---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
...+.++|||++++|+++..+. ...+|.+. . ++..+.+++...-..+. +..+..++|||||++|||......
T Consensus 109 ~~~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDG~~la~~~~~~G 185 (741)
T 1yr2_A 109 ERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG---ATALDAWAASDDGRLLAYSVQDGG 185 (741)
T ss_dssp CEECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEETT
T ss_pred cccCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC---CEEEEeEEECCCCCEEEEEEcCCC
Confidence 4455667999999999986532 46678887 4 56667776653211100 012368999999999999876531
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
....+|+++|+++|+.... .........++|||| +.
T Consensus 186 ---------------------------------------~e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~-- 221 (741)
T 1yr2_A 186 ---------------------------------------SDWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DA-- 221 (741)
T ss_dssp ---------------------------------------CSEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SE--
T ss_pred ---------------------------------------CceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CE--
Confidence 1236899999999987665 222223467899999 98
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--eecCCCC---ccccceeecCCCCE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESI---SSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~lt~~~---~~~~~p~~SpDG~~ 330 (771)
|+|++..... +.+.....++..+||++++ .++.. +.+.... ....++.|||||++
T Consensus 222 --l~~~~~~~~~-~~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~ 281 (741)
T 1yr2_A 222 --LLYSRFAEPK-EGQAFQALNYNQTVWLHRL-----------------GTPQSADQPVFATPELPKRGHGASVSSDGRW 281 (741)
T ss_dssp --EEEEECCCC---------CCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred --EEEEEecCcc-cccccccCCCCCEEEEEEC-----------------CCCchhCEEEeccCCCCeEEEEEEECCCCCE
Confidence 9998754321 1111122344568999998 44432 2232222 23678999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCC--C-CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
|+|.+.+.. ....+||++|+.++ + .+.++.... . . ...+++||+.|++.+
T Consensus 282 l~~~~~~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~-----------~---------~-~~~~~~dg~~l~~~s 334 (741)
T 1yr2_A 282 VVITSSEGT------DPVNTVHVARVTNGKIGPVTALIPDLK-----------A---------Q-WDFVDGVGDQLWFVS 334 (741)
T ss_dssp EEEEEECTT------CSCCEEEEEEEETTEECCCEEEECSSS-----------S---------C-EEEEEEETTEEEEEE
T ss_pred EEEEEEccC------CCcceEEEEECCCCCCcccEEecCCCC-----------c---------e-EEEEeccCCEEEEEE
Confidence 999987641 12568999999876 3 333321110 0 1 112568999999988
Q ss_pred eeCC-eeEEEEEECCCC--cEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 408 IWGS-SQVIISVNVSSG--ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 408 ~~~~-~~~l~~~d~~tg--~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+.+. ..+|+.+|++++ +.+.+...... ....++..++.++++.... .-.+|++.++.
T Consensus 335 ~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~ 394 (741)
T 1yr2_A 335 GDGAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHD-AKSQVLAFDLD 394 (741)
T ss_dssp CTTCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEET-TEEEEEEEETT
T ss_pred CCCCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEEC-CEEEEEEEeCC
Confidence 7543 678999999884 56777655432 2233455577777766543 34567877753
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-16 Score=159.79 Aligned_cols=218 Identities=15% Similarity=0.122 Sum_probs=130.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
.....|+||++||++.. ...|...+..|++ +|.|+++|+|| +|.+... .....++++.+.+..+++.
T Consensus 16 ~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~l~~-- 82 (267)
T 3fla_A 16 APDARARLVCLPHAGGS--ASFFFPLAKALAP-AVEVLAVQYPG---RQDRRHE-----PPVDSIGGLTNRLLEVLRP-- 82 (267)
T ss_dssp CTTCSEEEEEECCTTCC--GGGGHHHHHHHTT-TEEEEEECCTT---SGGGTTS-----CCCCSHHHHHHHHHHHTGG--
T ss_pred CCCCCceEEEeCCCCCC--chhHHHHHHHhcc-CcEEEEecCCC---CCCCCCC-----CCCcCHHHHHHHHHHHHHh--
Confidence 34567999999997664 4567777888765 49999999999 6655321 1122455555555555544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCc----eeEEEecCCccchhhhhcC-CCCCcchhhhhccCCC--CccCCCCCC-
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKG--KDSFTESPS- 684 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~----~~~~v~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~- 684 (771)
.+.+++.|+|||+||.+++.++.++|++ ++++++.++.......... .......+...+.... .......+.
T Consensus 83 ~~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 83 FGDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp GTTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred cCCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 2457899999999999999999999986 8888887765321111000 0000000000000000 000000000
Q ss_pred --------hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 685 --------VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 685 --------~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
...........+.. ...+++|+|+++|++|..+|++..+.+.+.+.. +++++++++ +|.+... ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~---~~~~~~~~g-gH~~~~~-~~~ 236 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG---PADLRVLPG-GHFFLVD-QAA 236 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS---CEEEEEESS-STTHHHH-THH
T ss_pred HHHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC---CceEEEecC-Cceeecc-CHH
Confidence 00000111111111 156889999999999999998877776655432 489999998 9976533 455
Q ss_pred HHHHHHHHHHHHh
Q 004141 757 ESFLNIGLWFKKY 769 (771)
Q Consensus 757 ~~~~~i~~fl~~~ 769 (771)
++.+.+.+||++.
T Consensus 237 ~~~~~i~~fl~~~ 249 (267)
T 3fla_A 237 PMIATMTEKLAGP 249 (267)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhccc
Confidence 7778888888654
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=157.58 Aligned_cols=226 Identities=11% Similarity=0.106 Sum_probs=132.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+++.....+ ...|+||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+... .....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~-~~~~v~~~D~~G---~G~S~~~-----~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQD--HRLFKNLAPLLA-RDFHVICPDWRG---HDAKQTD-----SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCC--GGGGTTHHHHHT-TTSEEEEECCTT---CSTTCCC-----CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCc--HhHHHHHHHHHH-hcCcEEEEcccc---CCCCCCC-----ccccC
Confidence 466666554433 235789999997765 346777888885 459999999999 5554321 12234
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccchh-----hhhcCCCCCcchh---
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNLA-----LMVGTTDIPDWCY--- 667 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~~-----~~~~~~~~~~~~~--- 667 (771)
.+++.+.+..+++. .+.+++.|+||||||.+++.++.++ |++++++|+.+|..... .+........+..
T Consensus 70 ~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (264)
T 3ibt_A 70 SQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLLQPHPGFWQQLAEGQHPTEYVAGRQ 147 (264)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCSSCCHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCCCcChhhcchhhcccChhhHHHHHH
Confidence 56666666555555 2456899999999999999999999 99999999998765110 0000000000100
Q ss_pred --hhhc-cCCC--------CccCCCCCChhhHH----HH-----hhcCcccccCCCCCcEEEEeeCCCC--ccCcHHHHH
Q 004141 668 --VESY-GSKG--------KDSFTESPSVEDLT----RF-----HSKSPISHISKVKTPTIFLLGAQDL--RVPVSNGLQ 725 (771)
Q Consensus 668 --~~~~-~~~~--------~~~~~~~~~~~~~~----~~-----~~~sp~~~~~~i~~P~lii~G~~D~--~vp~~~~~~ 725 (771)
...+ .... ...+... ...... .+ ...++...+.++++|+|+++|..|. .++++..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~~~~~~~~~~~~~~ 226 (264)
T 3ibt_A 148 SFFDEWAETTDNADVLNHLRNEMPWF-HGEMWQRACREIEANYRTWGSPLDRMDSLPQKPEICHIYSQPLSQDYRQLQLE 226 (264)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHTGGGS-CHHHHHHHHHHHHHHHHHHSSHHHHHHTCSSCCEEEEEECCSCCHHHHHHHHH
T ss_pred HHHHHhcccCCcHHHHHHHHHhhhhc-cchhHHHHHHHhccchhhccchhhcccccCCCeEEEEecCCccchhhHHHHHH
Confidence 0000 0000 0000000 000000 00 0112235567899999999864444 333444444
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 726 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.+.+ ...++++++++||.... +...++.+.+.+||+
T Consensus 227 ~~~~~----~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~ 263 (264)
T 3ibt_A 227 FAAGH----SWFHPRHIPGRTHFPSL-ENPVAVAQAIREFLQ 263 (264)
T ss_dssp HHHHC----TTEEEEECCCSSSCHHH-HCHHHHHHHHHHHTC
T ss_pred HHHhC----CCceEEEcCCCCCcchh-hCHHHHHHHHHHHHh
Confidence 44433 34799999999997653 344567777877774
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=162.41 Aligned_cols=232 Identities=12% Similarity=0.078 Sum_probs=139.1
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..+|.++....+. +.|+||++||.+.. ...|...+..|++. |.|+++|+|| +|.+..... .....
T Consensus 15 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~~-~~~~~ 79 (302)
T 1mj5_A 15 EIKGRRMAYIDEG--------TGDPILFQHGNPTS--SYLWRNIMPHCAGL-GRLIACDLIG---MGDSDKLDP-SGPER 79 (302)
T ss_dssp EETTEEEEEEEES--------CSSEEEEECCTTCC--GGGGTTTGGGGTTS-SEEEEECCTT---STTSCCCSS-CSTTS
T ss_pred EECCEEEEEEEcC--------CCCEEEEECCCCCc--hhhhHHHHHHhccC-CeEEEEcCCC---CCCCCCCCC-CCccc
Confidence 3467777655442 14889999997765 33566666677654 8999999999 444421110 01111
Q ss_pred cchhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC-----------C
Q 004141 595 QDVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-----------I 662 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~-----------~ 662 (771)
...+++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|............ .
T Consensus 80 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAMPIEWADFPEQDRDLFQAFRSQ 157 (302)
T ss_dssp SCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCSCBCGGGSCGGGHHHHHHHHST
T ss_pred ccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCCchhhhhhhHHHHHHHHHHhcc
Confidence 3466666666666655 244 7899999999999999999999999999999988653110000000 0
Q ss_pred Ccc-------hhhhh-cc----CCC--------CccCCCC-CChhhHHHH-hhc--------------CcccccCCCCCc
Q 004141 663 PDW-------CYVES-YG----SKG--------KDSFTES-PSVEDLTRF-HSK--------------SPISHISKVKTP 706 (771)
Q Consensus 663 ~~~-------~~~~~-~~----~~~--------~~~~~~~-~~~~~~~~~-~~~--------------sp~~~~~~i~~P 706 (771)
... .+... +. ... ...+... ........+ ... .....+.++++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P 237 (302)
T 1mj5_A 158 AGEELVLQDNVFVEQVLPGLILRPLSEAEMAAYREPFLAAGEARRPTLSWPRQIPIAGTPADVVAIARDYAGWLSESPIP 237 (302)
T ss_dssp THHHHHTTTCHHHHTHHHHTSSSCCCHHHHHHHHGGGCSSSGGGHHHHHTGGGSCBTTBSHHHHHHHHHHHHHHTTCCSC
T ss_pred chhhhhcChHHHHHHHHHhcCcccCCHHHHHHHHHHhhcccccccchHHHHHhccccccchhhHHHHHHHHhhhhccCCC
Confidence 000 00000 00 000 0000000 000000000 010 112346778999
Q ss_pred EEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 707 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 707 ~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+|+++|++|..+|++.++.+.+.+ .. +++++ ++||.+... ...++.+.+.+|+++..
T Consensus 238 ~l~i~g~~D~~~~~~~~~~~~~~~----~~-~~~~~-~~gH~~~~e-~p~~~~~~i~~fl~~~~ 294 (302)
T 1mj5_A 238 KLFINAEPGALTTGRMRDFCRTWP----NQ-TEITV-AGAHFIQED-SPDEIGAAIAAFVRRLR 294 (302)
T ss_dssp EEEEEEEECSSSSHHHHHHHTTCS----SE-EEEEE-EESSCGGGT-CHHHHHHHHHHHHHHHS
T ss_pred eEEEEeCCCCCCChHHHHHHHHhc----CC-ceEEe-cCcCccccc-CHHHHHHHHHHHHHhhc
Confidence 999999999999987776665443 23 78888 999986644 45688899999998653
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=151.22 Aligned_cols=205 Identities=17% Similarity=0.114 Sum_probs=126.2
Q ss_pred CCcEEEEEcCCCCCCCCCcch----HHHHHHHHCCcEEEEECCCCCCC------------------CChhhhhcCCCCcc
Q 004141 536 CDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSLG------------------FGEEALQSLPGKVG 593 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~----~~~~~la~~G~~Vv~~d~rG~~~------------------~g~~~~~~~~~~~~ 593 (771)
+.|.||++||.+.+. ..|. .....|.+.||.|+.+|+++... +|... .......
T Consensus 4 ~~~~vl~lHG~g~~~--~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~--~w~~~~~ 79 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNG--KVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNR--AWFYHSE 79 (243)
T ss_dssp CCCEEEEECCTTCCH--HHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCE--ESSCCCS
T ss_pred cCceEEEeCCCCccH--HHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCc--ccccCCC
Confidence 468999999976552 2332 35566777799999999993211 11110 0000011
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC------CceeEEEecCCccchhhhhcCCCCCcchh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
.....|+.++++++.+....+..+++|+||||||.+|+.++.+++ ..++++++.++........ ...
T Consensus 80 ~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~---- 152 (243)
T 1ycd_A 80 ISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHP---- 152 (243)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TST----
T ss_pred CcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---ccc----
Confidence 123456666666665532223468999999999999999988642 2466777766654221000 000
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC---CCEEEEEeCC
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG---VETKVIVFPN 744 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g---~~~~~~~~~~ 744 (771)
+. ... .. .+ ......+.++++|+|++||++|.++|+++++.+++.+...+ .....+++++
T Consensus 153 ----~~---~~~-----~~---~~--~~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (243)
T 1ycd_A 153 ----GE---LRI-----TE---KF--RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYLKAQNGNKEKVLAYEHP 215 (243)
T ss_dssp ----TC---EEE-----CG---GG--TTTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHHHHTTTCTTTEEEEEES
T ss_pred ----cc---ccc-----ch---hH--HHhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhhhhccccccccEEEecC
Confidence 00 000 00 00 01122345688999999999999999999999999998741 1123445667
Q ss_pred CCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+||.+... ..+.+.+.+||+++++
T Consensus 216 ~gH~~~~~---~~~~~~i~~fl~~~~~ 239 (243)
T 1ycd_A 216 GGHMVPNK---KDIIRPIVEQITSSLQ 239 (243)
T ss_dssp SSSSCCCC---HHHHHHHHHHHHHHHC
T ss_pred CCCcCCch---HHHHHHHHHHHHHhhh
Confidence 89987543 3588999999998764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=168.13 Aligned_cols=265 Identities=9% Similarity=0.017 Sum_probs=171.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
.+++||||++|+|+.+... .....|+++++.++ +..+.+... .....++|| ||+.|+|++....
T Consensus 133 ~~~~SpDg~~lAy~~~~~G----~~~~~i~v~dl~tg--~~~~~~~~~-----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLAG----SDWREIHLMDVESK--QPLETPLKD-----VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp EEEECTTSSEEEEEEECSS----CCEEEEEEEETTTC--SEEEEEEEE-----EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred EEEECCCCCEEEEEEecCC----CceEEEEEEECCCC--CCCccccCC-----ceeccEEEe-CCCEEEEEEecCccccc
Confidence 3456899999999987532 34578899887433 333332221 114678999 9999999987642
Q ss_pred -----CCCeEEEEecC-Cc--ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCc
Q 004141 122 -----ESPIQFELWSQ-SQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDK 193 (771)
Q Consensus 122 -----~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (771)
...+++....+ +. .+.+....... +.++.++.|||||++|++.+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~~~------------------ 256 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAANST------------------ 256 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEESSS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEccCC------------------
Confidence 23456655522 22 12333322101 112357899999999999765431
Q ss_pred cCCCCCCcccccCCcCcccCCccCceEEEEEccCC--ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 194 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 194 ~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
....||++|++++ +.+.+ +........+ |++||++ |+|.++.+.
T Consensus 257 ----------------------~~~~i~~~d~~~~~~~~~~l--~~~~~~~~~~-~~~~g~~----l~~~t~~~~----- 302 (693)
T 3iuj_A 257 ----------------------SGNRLYVKDLSQENAPLLTV--QGDLDADVSL-VDNKGST----LYLLTNRDA----- 302 (693)
T ss_dssp ----------------------SCCEEEEEETTSTTCCCEEE--ECSSSSCEEE-EEEETTE----EEEEECTTC-----
T ss_pred ----------------------CCcEEEEEECCCCCCceEEE--eCCCCceEEE-EeccCCE----EEEEECCCC-----
Confidence 2368999999877 56777 3333333333 8999999 999986543
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
.+.+|+.+|+ +++.. +.|+.+..... .|||+|++|++...++ | .
T Consensus 303 ------~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~----g----~ 349 (693)
T 3iuj_A 303 ------PNRRLVTVDA-----------------ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD----A----T 349 (693)
T ss_dssp ------TTCEEEEEET-----------------TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET----T----E
T ss_pred ------CCCEEEEEeC-----------------CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC----C----e
Confidence 2348999998 55443 56666554443 9999999999998875 2 4
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEE
Q 004141 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLR 427 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~ 427 (771)
.+|++++++++..+.+..... ..+..+.+++|++.|++..+. .....||.+|+.+++.+.
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~-------------------~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGL-------------------GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSS-------------------SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred eEEEEEECCCCeeEEeecCCC-------------------ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 679999988654332211100 012345678899988887653 344679999999999888
Q ss_pred ecCCC
Q 004141 428 ITPAE 432 (771)
Q Consensus 428 l~~~~ 432 (771)
+....
T Consensus 411 l~~~~ 415 (693)
T 3iuj_A 411 YRASA 415 (693)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 87544
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.3e-16 Score=157.93 Aligned_cols=207 Identities=18% Similarity=0.176 Sum_probs=125.4
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+... ....+++ .++.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~------~~~~~~~---~~~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSRGF------GALSLAD---MAEAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCCSC------CCCCHHH---HHHHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCC---CCCCCCC------CCcCHHH---HHHHHHHH--hC-CCe
Confidence 79999997655 346777777775 589999999999 5554321 1223344 34445443 34 789
Q ss_pred EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc---hhh-----------hhccC-CCCc------
Q 004141 619 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW---CYV-----------ESYGS-KGKD------ 677 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~---~~~-----------~~~~~-~~~~------ 677 (771)
.|+||||||.+++.+|.++|++++++|+.++................ .+. ..+.. ....
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETARQ 156 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTHHH
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCCCCccccccccCCCHHHHHHHHHHHhccHHHHHHHHHHHHhcCCccchh
Confidence 99999999999999999999999999988764211100000000000 000 00000 0000
Q ss_pred -------cC--CCCCChhhH----HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 678 -------SF--TESPSVEDL----TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 678 -------~~--~~~~~~~~~----~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
.+ ...+..... ..+........+.++++|+|+++|++|..+|++.++.+.+.+. +.+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~ 232 (258)
T 1m33_A 157 DARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAK 232 (258)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEETT
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHhCCHHHHHhhCCCCEEEEeecCCCCCCHHHHHHHHHhCc----cceEEEeCC
Confidence 00 000000000 0111222233567789999999999999999877666554432 468899999
Q ss_pred CCccCCCCCChHHHHHHHHHHHHH
Q 004141 745 DVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 745 ~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+||..... ...++.+.+.+|+++
T Consensus 233 ~gH~~~~e-~p~~~~~~i~~fl~~ 255 (258)
T 1m33_A 233 AAHAPFIS-HPAEFCHLLVALKQR 255 (258)
T ss_dssp CCSCHHHH-SHHHHHHHHHHHHTT
T ss_pred CCCCcccc-CHHHHHHHHHHHHHh
Confidence 99986543 345788888899864
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=142.75 Aligned_cols=267 Identities=12% Similarity=0.093 Sum_probs=161.9
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecCCcccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~ 149 (771)
..+.++++.. ++.......+ .... .++|||||+++++..... ..++.++ ..+.. .+.........
T Consensus 20 ~~v~~~d~~~--~~~~~~~~~~----~~~~-~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~--- 86 (331)
T 3u4y_A 20 RRISFFSTDT--LEILNQITLG----YDFV-DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEGQSSM--- 86 (331)
T ss_dssp TEEEEEETTT--CCEEEEEECC----CCEE-EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEECSSCC---
T ss_pred CeEEEEeCcc--cceeeeEEcc----CCcc-eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccCCCCc---
Confidence 4777776532 2333222222 1234 889999999887765532 3677777 45554 33333333331
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004141 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
.+++|||||++|+ ++.... ....|++||+.+++
T Consensus 87 ------~~~~~s~dg~~l~-~~~~~~----------------------------------------~~~~i~v~d~~~~~ 119 (331)
T 3u4y_A 87 ------ADVDITPDDQFAV-TVTGLN----------------------------------------HPFNMQSYSFLKNK 119 (331)
T ss_dssp ------CCEEECTTSSEEE-ECCCSS----------------------------------------SSCEEEEEETTTTE
T ss_pred ------cceEECCCCCEEE-EecCCC----------------------------------------CcccEEEEECCCCC
Confidence 2389999999988 432210 12489999999988
Q ss_pred eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce-eEEEecccccchhhhhhhhcCCCCCCc
Q 004141 230 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 230 ~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
.... .+.......++|+|||+. |++..... .. |++++++ ..+.
T Consensus 120 ~~~~--~~~~~~~~~~~~spdg~~----l~~~~~~~--------------~~~i~~~~~~----------------~~g~ 163 (331)
T 3u4y_A 120 FIST--IPIPYDAVGIAISPNGNG----LILIDRSS--------------ANTVRRFKID----------------ADGV 163 (331)
T ss_dssp EEEE--EECCTTEEEEEECTTSSC----EEEEEETT--------------TTEEEEEEEC----------------TTCC
T ss_pred eEEE--EECCCCccceEECCCCCE----EEEEecCC--------------CceEEEEEEC----------------CCCc
Confidence 7665 344445678999999998 87765221 13 6666652 2222
Q ss_pred c----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCc
Q 004141 309 V----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 384 (771)
Q Consensus 309 ~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 384 (771)
. ..............|||||++|++..... ..|+++|+.+++.... +..+.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~d~~~~~~~~~-------~~~~~~---~--- 220 (331)
T 3u4y_A 164 LFDTGQEFISGGTRPFNITFTPDGNFAFVANLIG----------NSIGILETQNPENITL-------LNAVGT---N--- 220 (331)
T ss_dssp EEEEEEEEECSSSSEEEEEECTTSSEEEEEETTT----------TEEEEEECSSTTSCEE-------EEEEEC---S---
T ss_pred EeecCCccccCCCCccceEECCCCCEEEEEeCCC----------CeEEEEECCCCcccce-------eeeccC---C---
Confidence 1 12222333467889999999887766442 4699999887664110 011100 0
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC---C----CC---CceeeEEeecCCEEEEEEeCC
Q 004141 385 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP---A----ES---NFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 385 g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~---~----~~---~~~~~~~s~dg~~l~~~~~~~ 454 (771)
..+..++|+|||++|+++.. +...|+.+|+.+++++.+.. . .. ......|++||+.|+++....
T Consensus 221 ----~~~~~~~~spdg~~l~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 221 ----NLPGTIVVSRDGSTVYVLTE--STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp ----SCCCCEEECTTSSEEEEECS--SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred ----CCCceEEECCCCCEEEEEEc--CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 13457889999998877643 44568889999998754421 1 11 112258999999988776432
Q ss_pred CCCCeEEEEEec
Q 004141 455 VDVPQVKYGYFV 466 (771)
Q Consensus 455 ~~p~~l~~~~~~ 466 (771)
..+.+.++.
T Consensus 295 ---~~v~v~d~~ 303 (331)
T 3u4y_A 295 ---RELKVFTIS 303 (331)
T ss_dssp ---TEEEEEETT
T ss_pred ---CcEEEEEec
Confidence 357776654
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=157.71 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=132.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
.+..|.||++||.+.+ ...|...+..|+++ ||.|+++|+|| +|.+... ....++++.+.+..+.+..
T Consensus 33 ~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 33 RASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCC---Cccchhh------HHHHHHHHHHHHHHHhhcC
Confidence 3456789999997665 34688889999988 99999999999 5554311 1134667777777776653
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCCccchhhh----h--cCCCCCcchhhh-hccC----CCCccC
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALM----V--GTTDIPDWCYVE-SYGS----KGKDSF 679 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p~~~~~~~----~--~~~~~~~~~~~~-~~~~----~~~~~~ 679 (771)
.+++.|+||||||.+++.++.++|+ +++++|+.++....... . ............ .+.. .....+
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQMGQYGDTDYLKWLFPTSMRSNLYRICYSPWGQEFSICNY 178 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCTTCBCSCCHHHHHHCTTCCHHHHHHHHTSTTGGGSTGGGG
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCcccccccchhhhhHHHHHHHHHHhhccchHHHHHhhhhhc
Confidence 4789999999999999999999999 79999998875432100 0 000000000000 0000 000000
Q ss_pred CCCCC-hhhH-------HHHhhcC-------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHH----------------
Q 004141 680 TESPS-VEDL-------TRFHSKS-------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYAR---------------- 728 (771)
Q Consensus 680 ~~~~~-~~~~-------~~~~~~s-------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~---------------- 728 (771)
...+. .... ..+.... ....+.+++ |+|+++|++|.++|++.++.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~-P~lii~G~~D~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (302)
T 1pja_A 179 WHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVG-HLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEEQLVY 257 (302)
T ss_dssp BCCTTCHHHHHHHCSSHHHHTTSSCCTTHHHHHHHHTTCS-EEEEEECTTCSSSSSGGGGGTCEECTTCCEECGGGSHHH
T ss_pred ccChhhhhhhhccchHHHHhhcCCccccchhHHHHHhccC-cEEEEEeCCCCccchhHhhHhhhcCCcccccchhhhhhh
Confidence 01111 0100 0000000 123467788 99999999999999988776632
Q ss_pred --------HHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 729 --------ALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 729 --------~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
.+... .++++++++++||..... ....+.+.+.+||
T Consensus 258 ~~~~~~~~~l~~~-~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl 301 (302)
T 1pja_A 258 LRDSFGLKTLLAR-GAIVRCPMAGISHTAWHS-NRTLYETCIEPWL 301 (302)
T ss_dssp HTTTTSHHHHHHT-TCEEEEECSSCCTTTTTS-CHHHHHHHTGGGC
T ss_pred hhhhhchhhHhhc-CCeEEEEecCcccccccc-CHHHHHHHHHHhc
Confidence 22222 248999999999986644 4446666666665
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-14 Score=146.39 Aligned_cols=259 Identities=9% Similarity=0.063 Sum_probs=183.7
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC---------
Q 004141 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--------- 121 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--------- 121 (771)
.+|.+|.|+.... ...|+.++ .++...++|+.. ..--++|+|++|+|+....+
T Consensus 23 ~~g~~iy~~n~~d-------~~~ly~~~--~dg~~~~~l~~~---------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 23 ESDGEVFFSNTND-------NGRLYAMN--IDGSNIHKLSND---------TAMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EETTEEEEEEGGG-------TTEEEEEE--TTSCSCEEEEEE---------EEEEEEECSSEEEEEEECC------CCSS
T ss_pred EeCCEEEEEeCCC-------CceEEEEc--CCCCCCEEccCC---------ceeeEEEcCCEEEEEECCCCcccccceec
Confidence 3889999975421 25688855 466677777543 23466999999999987642
Q ss_pred -CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 122 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 -~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
....|+.+. ++++..+++.. .+..|+|+|++|+|.....
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~s~~g~~Iy~~~~~~------------------------- 125 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD--------------PCIYASLIGNYIYYLHYDT------------------------- 125 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS--------------CEEEEEEETTEEEEEEESS-------------------------
T ss_pred cCCCeEEEEeCCCCcceEeecC--------------CccEEEEeCCEEEEEeecC-------------------------
Confidence 145688888 55555555442 2457999999999975111
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
.....||++++++...++| +.... ..|+|+|+. |+|++. ..
T Consensus 126 ---------------~~~~~Iy~~~~dGs~~~~l--t~~~~----~~~~~~g~~----iy~t~~--------------g~ 166 (302)
T 3s25_A 126 ---------------QTATSLYRIRIDGEEKKKI--KNHYL----FTCNTSDRY----FYYNNP--------------KN 166 (302)
T ss_dssp ---------------SSCEEEEEEETTSCCCEEE--ESSCC----CCSEEETTE----EEEECT--------------TT
T ss_pred ---------------CCCceEEEEECCCCCeEEE--eCCCc----eEeeEECCE----EEEEeC--------------CC
Confidence 0347899999999888888 44432 346899999 999873 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
.+||++++ +++..++|..... ..| ++|+|++|+|+.... ..+|++++++++
T Consensus 167 ~~Iy~~~l-----------------~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~---------~~~I~~~~ldG~ 217 (302)
T 3s25_A 167 GQLYRYDT-----------------ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR---------DNAIVHVNINNP 217 (302)
T ss_dssp CCEEEEET-----------------TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG---------TTEEEEECSSSC
T ss_pred ceEEEEEC-----------------CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC---------CcEEEEEECCCC
Confidence 38999998 7777777765322 345 459999999988653 268999999988
Q ss_pred CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeE
Q 004141 360 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSL 439 (771)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~ 439 (771)
..+.++... .+.|+|+|++|+|..... ...|+++++++...++|.... ...
T Consensus 218 ~~~~Lt~~~------------------------~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~~----~~~ 268 (302)
T 3s25_A 218 NPVVLTEAN------------------------IEHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAKGE----FCN 268 (302)
T ss_dssp CCEECSCSC------------------------EEEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEESC----EEE
T ss_pred CeEEEeCCC------------------------cceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeCCc----cce
Confidence 876665332 134899999998876543 378999999988888887653 246
Q ss_pred EeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 440 LTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 440 ~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+++.+++|+++..... .|++.++.
T Consensus 269 i~i~~d~Iy~td~~~~---~i~~~~~d 292 (302)
T 3s25_A 269 INVTSQYVYFTDFVSN---KEYCTSTQ 292 (302)
T ss_dssp EEECSSEEEEEETTTC---CEEEEESS
T ss_pred EEEeCCEEEEEECCCC---eEEEEECC
Confidence 7889999999874333 38877653
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=153.74 Aligned_cols=210 Identities=16% Similarity=0.209 Sum_probs=123.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|.||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+... ....++++.+.+..+++...++..
T Consensus 16 ~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~G---hG~S~~~------~~~~~~~~a~~l~~~l~~l~~~~~ 84 (264)
T 1r3d_A 16 TPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPER------HCDNFAEAVEMIEQTVQAHVTSEV 84 (264)
T ss_dssp BCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCCTTS
T ss_pred CCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCC---CCCCCCC------CccCHHHHHHHHHHHHHHhCcCCC
Confidence 4889999997765 4468888888876899999999999 5544321 012355666556555555323323
Q ss_pred eEEEEEcChhHHHHHH---HHhhCCCceeEEEecCCccchhhhh----cCCCCCcch----------hhhhccCCCCccC
Q 004141 617 KVTVVGGSHGGFLTTH---LIGQAPDKFVAAAARNPLCNLALMV----GTTDIPDWC----------YVESYGSKGKDSF 679 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~---~a~~~p~~~~~~v~~~p~~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~ 679 (771)
++.|+||||||.+++. ++.++|++++++|+.++........ .......|. ....+.. ...+
T Consensus 85 p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 162 (264)
T 1r3d_A 85 PVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--QAVF 162 (264)
T ss_dssp EEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT--SGGG
T ss_pred ceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCCCCCCChhhhhhhhcccHHHHHHhccccHHHHHHHHhh--hhhh
Confidence 4999999999999999 8888999999999887643210000 000000000 0000000 0000
Q ss_pred CCCCC--------------hhhHHHHh-h------cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 680 TESPS--------------VEDLTRFH-S------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 680 ~~~~~--------------~~~~~~~~-~------~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
..... ......+. . ......+.++++|+|+++|++|..++ .+.+.+ . .+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~---~--~~ 232 (264)
T 1r3d_A 163 SSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKFQ-----QLAESS---G--LS 232 (264)
T ss_dssp TTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHHH-----HHHHHH---C--SE
T ss_pred hccCHHHHHHHHHHHhhcchHHHHHHHHhhhhccCccHHHHHHhcCCCEEEEEECCCchHH-----HHHHHh---C--Cc
Confidence 00000 00000010 0 11223456789999999999997542 233332 1 56
Q ss_pred EEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 739 VIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++++++||..... ...++.+.+.+|++++.
T Consensus 233 ~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~~~ 263 (264)
T 1r3d_A 233 YSQVAQAGHNVHHE-QPQAFAKIVQAMIHSII 263 (264)
T ss_dssp EEEETTCCSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred EEEcCCCCCchhhc-CHHHHHHHHHHHHHHhc
Confidence 88999999986543 34578899999998764
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=153.76 Aligned_cols=235 Identities=14% Similarity=0.157 Sum_probs=131.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-----HHHHHHHCCcEEEEECCCCCCCCChhhhhcCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-----~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~ 589 (771)
..+|.+++...+-++ ....|+||++||.+.... ..|.. .+..|++ +|.|+++|+|| +|.+.... +
T Consensus 17 ~~~~~~l~y~~~G~~----~~~~p~vvllHG~~~~~~-~~~~~~~~~~~~~~L~~-~~~vi~~D~~G---~G~s~~~~-~ 86 (286)
T 2qmq_A 17 ETPYGSVTFTVYGTP----KPKRPAIFTYHDVGLNYK-SCFQPLFRFGDMQEIIQ-NFVRVHVDAPG---MEEGAPVF-P 86 (286)
T ss_dssp EETTEEEEEEEESCC----CTTCCEEEEECCTTCCHH-HHHHHHHTSHHHHHHHT-TSCEEEEECTT---TSTTCCCC-C
T ss_pred ccCCeEEEEEeccCC----CCCCCeEEEeCCCCCCch-hhhhhhhhhchhHHHhc-CCCEEEecCCC---CCCCCCCC-C
Confidence 345777876665432 124689999999766531 01332 5666755 69999999999 44322110 1
Q ss_pred CCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh--------c-CC
Q 004141 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------G-TT 660 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~--------~-~~ 660 (771)
........+++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|......+. . ..
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 164 (286)
T 2qmq_A 87 LGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTS 164 (286)
T ss_dssp TTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCCCHHHHHHHHHHHTTS
T ss_pred CCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCCcccchhhhhhhhhccccc
Confidence 111001344444444444443 234689999999999999999999999999999999854221100 0 00
Q ss_pred CCCcchhhhhccCC-------C----CccCCCCCChhhHHHHh----hcCc----ccccCCCCCcEEEEeeCCCCccCcH
Q 004141 661 DIPDWCYVESYGSK-------G----KDSFTESPSVEDLTRFH----SKSP----ISHISKVKTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 661 ~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~----~~sp----~~~~~~i~~P~lii~G~~D~~vp~~ 721 (771)
..........+... . ...+...........+. .... ...+.++++|+|+++|++|..+| .
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-~ 243 (286)
T 2qmq_A 165 SIPDMILGHLFSQEELSGNSELIQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHED-A 243 (286)
T ss_dssp CHHHHHHHHHSCHHHHHTTCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCCCCCSEETTEECCCSCEEEEEETTSTTHH-H
T ss_pred cchHHHHHHHhcCCCCCcchHHHHHHHHHHHhcCCcchHHHHHHHHhhhhhhhhhhchhccCCCCEEEEecCCCcccc-H
Confidence 00000000000000 0 00000000000001110 0011 13456889999999999999997 2
Q ss_pred HHHHHHHHHHhCCC-CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 722 NGLQYARALREKGV-ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 722 ~~~~~~~~l~~~g~-~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
. .+.+.+... ++++++++++||.+.... ..++.+.+.+||+
T Consensus 244 ~----~~~~~~~~~~~~~~~~~~~~gH~~~~e~-p~~~~~~i~~fl~ 285 (286)
T 2qmq_A 244 V----VECNSKLDPTQTSFLKMADSGGQPQLTQ-PGKLTEAFKYFLQ 285 (286)
T ss_dssp H----HHHHHHSCGGGEEEEEETTCTTCHHHHC-HHHHHHHHHHHHC
T ss_pred H----HHHHHHhcCCCceEEEeCCCCCcccccC-hHHHHHHHHHHhc
Confidence 2 233444333 589999999999865333 4577788888874
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=157.28 Aligned_cols=207 Identities=14% Similarity=0.139 Sum_probs=124.8
Q ss_pred CCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECC----CCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004141 536 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNY----RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~----rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..|+||++||.+.+... ..|...+..| +.||.|+++|+ || +|.+.. ....+|+.+.++++.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G---~G~S~~--------~~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIG---SGPQDH--------AHDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTT---SCSCCH--------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCC---CCCccc--------cCcHHHHHHHHHHHHHH
Confidence 45789999996543222 2345566777 78999999965 66 554321 12367888888888775
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHh--hCCCceeEEEecCCccchhhhhcCCCCCc--ch----hhhhc---c--CCCC-
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIG--QAPDKFVAAAARNPLCNLALMVGTTDIPD--WC----YVESY---G--SKGK- 676 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~--~~p~~~~~~v~~~p~~~~~~~~~~~~~~~--~~----~~~~~---~--~~~~- 676 (771)
.+.+++.|+||||||.+++.++. .+|++++++|+.+|...... ..... +. ....+ + ....
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCDPEN----PLFTPEGCAARKEHVEKLMAEGRGEDSLA 178 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCCTTS----TTTSHHHHHHHHHHHHHHHHHTCTTCGGG
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCcccchh----cccCHHHHHHHHHHHHHHhhccCcccccc
Confidence 35678999999999999999998 57999999999887643210 00000 00 00000 0 0000
Q ss_pred -ccCCCCCC-hhhH---------HH----Hh---hcCcccccCCCCCcEEEEeeCCCCccCcHHH-HHHHHHHHhCCCCE
Q 004141 677 -DSFTESPS-VEDL---------TR----FH---SKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQYARALREKGVET 737 (771)
Q Consensus 677 -~~~~~~~~-~~~~---------~~----~~---~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~-~~~~~~l~~~g~~~ 737 (771)
..+...+. .... .. .. ..+....+.++++|+|+++|++|.++|++.. ..+.+.+.+.-...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLvi~G~~D~~vp~~~~~~~~~~~l~~~~~~~ 258 (335)
T 2q0x_A 179 MLKHYDIPITPARLAGGGFPTLQEAVWNPCIRKEFDVLRRSVGVIKVPLLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCN 258 (335)
T ss_dssp GTTTCSSCCCHHHHHTCSCSSHHHHTHHHHHTTCHHHHHHTGGGCCSCEEEEEECCTTCCCCHHHHHHHHHHHHHHSSSS
T ss_pred chhhccCccCHHHHhhccCCCchhhhhhhhhhhhhhHHHHHHhcCCCCeEEEEecCCCCCChhhhHHHHHHHHHHhcCcc
Confidence 00000000 0000 00 00 0112235678999999999999999998642 23344444322223
Q ss_pred E--------E-----EEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 738 K--------V-----IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 738 ~--------~-----~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+ + ++++++|| +....+.+||++.
T Consensus 259 ~~~~~~~~~~~~~~~~~i~~agH---------e~~~~i~~FL~~~ 294 (335)
T 2q0x_A 259 RVTVSYFNDTCDELRRVLKAAES---------EHVAAILQFLADE 294 (335)
T ss_dssp CEEEEECCCEECTTSCEEECCHH---------HHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhcccCCCCC---------HHHHHHHHHHHhh
Confidence 3 5 78999999 3478899999764
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-16 Score=161.04 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=128.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.......|...+..|+ .||.|+++|+|| +|.+.. .......++++.+.+..+++.. ..+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~----~~~~~~~~~~~~~~l~~~l~~~--~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPN---SGYSPV----SNQANVGLRDWVNAILMIFEHF--KFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTT---STTSCC----CCCTTCCHHHHHHHHHHHHHHS--CCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCC---CCCCCC----CCcccccHHHHHHHHHHHHHHh--CCC
Confidence 389999997433322335666776675 699999999999 554431 1112234677777777766663 446
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchh---hhhccC---------CCCccCCCCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY---VESYGS---------KGKDSFTESPS 684 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~~~~~ 684 (771)
++.|+||||||.+++.++.++|++++++|+.+|......+........... ...... ...........
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTTVMIYRAGFSSDLYPQLALRRQKLKTAADRLNYLKDLSRSHFSSQQ 190 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCCHHHHHHCTTSSSSHHHHHHHHTCCSHHHHHHHHHHHHHHHSCHHH
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCCcchhhhccccccchhHHHHHHHHhccCchhhhHhhccccccCHHH
Confidence 899999999999999999999999999999996543222111111000000 000000 00000000000
Q ss_pred h--------hhHHHHhhcCc---------------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 685 V--------EDLTRFHSKSP---------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 685 ~--------~~~~~~~~~sp---------------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
. .....+....+ ...+.+ ++|+|+++|++|..++++ + .+.+.+. ..+ ++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-~~P~lii~g~~D~~~~~~-~-~~~~~~~----~~~-~~ 262 (292)
T 3l80_A 191 FKQLWRGYDYCQRQLNDVQSLPDFKIRLALGEEDFKTGISE-KIPSIVFSESFREKEYLE-S-EYLNKHT----QTK-LI 262 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCCSSCCCCGGGGCCCCCT-TSCEEEEECGGGHHHHHT-S-TTCCCCT----TCE-EE
T ss_pred HHHhHHHHHHHHHHHHhhhhccccchhhhhcchhhhhccCC-CCCEEEEEccCccccchH-H-HHhccCC----Cce-ee
Confidence 0 00000111111 123445 899999999999999877 4 5443332 356 89
Q ss_pred eCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 742 FPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 742 ~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
+++++|.+.. +...++.+.+.+||+++-
T Consensus 263 ~~~~gH~~~~-e~p~~~~~~i~~fl~~~~ 290 (292)
T 3l80_A 263 LCGQHHYLHW-SETNSILEKVEQLLSNHE 290 (292)
T ss_dssp ECCSSSCHHH-HCHHHHHHHHHHHHHTCT
T ss_pred eCCCCCcchh-hCHHHHHHHHHHHHHhcc
Confidence 9999997654 345578889999998764
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=162.72 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=139.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcE----EEEECCCCCCCCChhhhhcCCCCc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS----LLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~----Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.|..+..++|.|+++. .+++|+|+++||+.+... ..+...++.|+++|+. |+++|+++.. ++.. . ..
T Consensus 178 ~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~--~r~~-~-~~--- 248 (403)
T 3c8d_A 178 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAIDTT--HRAH-E-LP--- 248 (403)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCSHH--HHHH-H-SS---
T ss_pred cCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCCCc--cccc-c-CC---
Confidence 4667889999998653 578999999999654221 1344567888888875 9999998621 1110 1 11
Q ss_pred cccchhhH--HHHHHHHHHcCC--CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 593 GSQDVNDV--LTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 593 ~~~~~~D~--~~~i~~l~~~~~--~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
......+. .+++.++.++.. .|+++++|+|+||||++++.++.++|++|+++++.+|.+.+....
T Consensus 249 ~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~~----------- 317 (403)
T 3c8d_A 249 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG----------- 317 (403)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCCC-----------
Confidence 11122332 245566666532 578899999999999999999999999999999999986422110
Q ss_pred hhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
.. +.......+.. . ......+|++|++|+.|..+ ..+++++++.|+++|+++++.++++ +|.
T Consensus 318 ----~~--------~~~~~~~~~~~-~---~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~G~~v~~~~~~G-gH~ 379 (403)
T 3c8d_A 318 ----GQ--------QEGVLLEKLKA-G---EVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHD 379 (403)
T ss_dssp ----SS--------SCCHHHHHHHT-T---SSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSC
T ss_pred ----CC--------cHHHHHHHHHh-c---cccCCCceEEEEeeCCCchh-HHHHHHHHHHHHhCCCCEEEEEeCC-CCC
Confidence 00 00011111111 1 12345688999999998654 5789999999999999999999999 697
Q ss_pred CCCCCChHHHHHHHHHHHHHh
Q 004141 749 IERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 749 ~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+. .....+.+++.||.+.
T Consensus 380 ~~---~w~~~l~~~l~~l~~~ 397 (403)
T 3c8d_A 380 AL---CWRGGLMQGLIDLWQP 397 (403)
T ss_dssp HH---HHHHHHHHHHHHHHGG
T ss_pred HH---HHHHHHHHHHHHHhcc
Confidence 42 1234566777777654
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=156.22 Aligned_cols=227 Identities=14% Similarity=0.143 Sum_probs=131.6
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++... +.++.|.||++||.+.+ ...|...+..|++ .|.|+++|+|| +|.+... ......
T Consensus 29 ~g~~l~y~~~------G~g~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---hG~S~~~----~~~~~~ 92 (318)
T 2psd_A 29 LDSFINYYDS------EKHAENAVIFLHGNATS--SYLWRHVVPHIEP-VARCIIPDLIG---MGKSGKS----GNGSYR 92 (318)
T ss_dssp TTEEEEEEEC------CSCTTSEEEEECCTTCC--GGGGTTTGGGTTT-TSEEEEECCTT---STTCCCC----TTSCCS
T ss_pred CCeEEEEEEc------CCCCCCeEEEECCCCCc--HHHHHHHHHHhhh-cCeEEEEeCCC---CCCCCCC----CCCccC
Confidence 5666654432 22334689999997765 3456666777755 47999999999 5554321 112234
Q ss_pred hhhHHHHHHHHHHcCCCCC-CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-hhhcCCCCCc-c--------
Q 004141 597 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-LMVGTTDIPD-W-------- 665 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~-~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-~~~~~~~~~~-~-------- 665 (771)
++++.+.+..+++. ++. +++.|+||||||.+++.+|.++|++++++|+.++..... .......... +
T Consensus 93 ~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (318)
T 2psd_A 93 LLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVDVIESWDEWPDIEEDIALIKSEEG 170 (318)
T ss_dssp HHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEECCSCBSCCTTSCSCHHHHHHHHSTHH
T ss_pred HHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEeccccCCccchhhhhhHHHHHHHHhcccc
Confidence 66666666666665 344 789999999999999999999999999999865432110 0000000000 0
Q ss_pred --------hhhhhcc-CCCCccC-----------CCCC-C-hhhHHHHhhcC----------------cccccCCC-CCc
Q 004141 666 --------CYVESYG-SKGKDSF-----------TESP-S-VEDLTRFHSKS----------------PISHISKV-KTP 706 (771)
Q Consensus 666 --------~~~~~~~-~~~~~~~-----------~~~~-~-~~~~~~~~~~s----------------p~~~~~~i-~~P 706 (771)
.+...+. ......+ ...+ . ......+.... ....+.++ ++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~P 250 (318)
T 2psd_A 171 EKMVLENNFFVETVLPSKIMRKLEPEEFAAYLEPFKEKGEVRRPTLSWPREIPLVKGGKPDVVQIVRNYNAYLRASDDLP 250 (318)
T ss_dssp HHHHTTTCHHHHTHHHHTCSSCCCHHHHHHHHGGGCSSSGGGHHHHHHHHTCCBTTTSCHHHHHHHHHHHHHHHTCTTSC
T ss_pred hhhhhcchHHHHhhccccccccCCHHHHHHHHHhhcCccccccchhcccccccccccccchhHHHHHHHHHHhccccCCC
Confidence 0000000 0000000 0000 0 00000000000 01124567 999
Q ss_pred EEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 707 TIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 707 ~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
+|+++|++| .+++ .++.+.+.+. ..+++++ ++||... .+....+.+.|.+||++.
T Consensus 251 ~Lvi~G~~D-~~~~-~~~~~~~~~~----~~~~~~i-~~gH~~~-~e~p~~~~~~i~~fl~~~ 305 (318)
T 2psd_A 251 KLFIESDPG-FFSN-AIVEGAKKFP----NTEFVKV-KGLHFLQ-EDAPDEMGKYIKSFVERV 305 (318)
T ss_dssp EEEEEEEEC-SSHH-HHHHHHTTSS----SEEEEEE-EESSSGG-GTCHHHHHHHHHHHHHHH
T ss_pred eEEEEeccc-cCcH-HHHHHHHhCC----CcEEEEe-cCCCCCH-hhCHHHHHHHHHHHHHHh
Confidence 999999999 8876 5555554432 3677778 7799765 444668889999999865
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.40 E-value=5.1e-17 Score=167.81 Aligned_cols=220 Identities=13% Similarity=0.226 Sum_probs=124.5
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|+||++||.+.+ ...|...+..|+ +||.|+++|+|| +|.+..............+++.+.+..+++. ++.
T Consensus 24 ~~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G---~G~s~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRG---YGGSSKPVGAPDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 35789999997765 346777777887 799999999999 5544321100001122233333333333333 234
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC-----------------CCcch-------hhhh-
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-----------------IPDWC-------YVES- 670 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~-----------------~~~~~-------~~~~- 670 (771)
+++.|+|||+||.+++.++.++|++++++|+.+|............ ..... +...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPTYVMFEEVDRFVARAYWHWYFLQQPAPYPEKVIGADPDTFYEGC 175 (304)
Confidence 6899999999999999999999999999999988654221100000 00000 0000
Q ss_pred cc-----------CCCCccCCCC---CC-hhh-HHHHhhc---C----cccccCCCCCcEEEEeeCCCCcc-CcHHHHHH
Q 004141 671 YG-----------SKGKDSFTES---PS-VED-LTRFHSK---S----PISHISKVKTPTIFLLGAQDLRV-PVSNGLQY 726 (771)
Q Consensus 671 ~~-----------~~~~~~~~~~---~~-~~~-~~~~~~~---s----p~~~~~~i~~P~lii~G~~D~~v-p~~~~~~~ 726 (771)
+. ......+... +. ... ...+... . ....+.++++|+|+++|++|..+ +......+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~ 255 (304)
T 3b12_A 176 LFGWGATGADGFDPEQLEEYRKQWRDPAAIHGSCCDYRAGGTIDFELDHGDLGRQVQCPALVFSGSAGLMHSLFEMQVVW 255 (304)
Confidence 00 0000000000 00 000 0000000 0 00115688999999999999655 44444444
Q ss_pred HHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 727 ARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 727 ~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
.+.+. ++++.++ ++||.+... ...++.+.|.+||++.
T Consensus 256 ~~~~~----~~~~~~i-~~gH~~~~e-~p~~~~~~i~~fl~~~ 292 (304)
T 3b12_A 256 APRLA----NMRFASL-PGGHFFVDR-FPDDTARILREFLSDA 292 (304)
Confidence 44333 3677778 999987643 3457788899999764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-13 Score=140.79 Aligned_cols=258 Identities=9% Similarity=-0.013 Sum_probs=149.2
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE-EEeCCCCCeEEEEecCCCCCC
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA-VVPSPSGSKLLVVRNPENESP 124 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~-~~~SPdG~~la~~~~~~~~~~ 124 (771)
....++||+.+++.... ...++.+++.........++.. ..... ++|||||++|+ +....++..
T Consensus 44 ~~~~s~dg~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~-~~~~~~~~~ 108 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDF--------CQTLVQIETQLEPPKVVAIQEG------QSSMADVDITPDDQFAV-TVTGLNHPF 108 (331)
T ss_dssp EEEECSSSCEEEEEEST--------TCEEEEEECSSSSCEEEEEEEC------SSCCCCEEECTTSSEEE-ECCCSSSSC
T ss_pred eEEEcCCCCEEEEEeCC--------CCeEEEEECCCCceeEEecccC------CCCccceEECCCCCEEE-EecCCCCcc
Confidence 44457899877665432 2478887764332102233222 22345 89999999997 544332222
Q ss_pred eEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004141 125 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
.+++++ ..++..+.+...... ..+.|||||++|++.....
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 149 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDA----------VGIAISPNGNGLILIDRSS----------------------------- 149 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTE----------EEEEECTTSSCEEEEEETT-----------------------------
T ss_pred cEEEEECCCCCeEEEEECCCCc----------cceEECCCCCEEEEEecCC-----------------------------
Confidence 566655 455555544443333 4899999999877654321
Q ss_pred ccCCcCcccCCccCce-EEEEEccCCc-e----eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeecc
Q 004141 204 WEEDWGETYAGKRQPS-LFVININSGE-V----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 277 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~-l~v~d~~~~~-~----~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~ 277 (771)
.. |++|+++... + ... .+.......++|+|||+. |+++..
T Consensus 150 --------------~~~i~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~v~~~-------------- 195 (331)
T 3u4y_A 150 --------------ANTVRRFKIDADGVLFDTGQEF--ISGGTRPFNITFTPDGNF----AFVANL-------------- 195 (331)
T ss_dssp --------------TTEEEEEEECTTCCEEEEEEEE--ECSSSSEEEEEECTTSSE----EEEEET--------------
T ss_pred --------------CceEEEEEECCCCcEeecCCcc--ccCCCCccceEECCCCCE----EEEEeC--------------
Confidence 23 6666665322 2 122 233345678899999997 776652
Q ss_pred CCceeEEEecccccchhhhhhhhcCCCCCCcc---eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 278 RPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 278 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
....|+++|+ .+++. ............++|||||++|++.... ...|+++
T Consensus 196 ~~~~v~v~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----------~~~i~~~ 248 (331)
T 3u4y_A 196 IGNSIGILET-----------------QNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTES----------TVDVFNF 248 (331)
T ss_dssp TTTEEEEEEC-----------------SSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSS----------EEEEEEE
T ss_pred CCCeEEEEEC-----------------CCCcccceeeeccCCCCCceEEECCCCCEEEEEEcC----------CCEEEEE
Confidence 2347889998 55553 2222234556789999999988765543 2458999
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
|+.+++...+..- ...+.. .. ........++|+|||++|+++....+ .+..+++.+..+..+..
T Consensus 249 d~~~~~~~~~~~~----~~~~~~--~~----~~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~ 312 (331)
T 3u4y_A 249 NQLSGTLSFVKSF----GHGLLI--DP----RPLFGANQMALNKTETKLFISANISR--ELKVFTISGKVVGYVAG 312 (331)
T ss_dssp ETTTTEEEEEEEE----ECCCCC--CC----GGGTTCCCEEECTTSSEEEEEETTTT--EEEEEETTSCEEEECTT
T ss_pred ECCCCceeeeccc----cccccc--CC----CCcccccceEECCCCCEEEEecCCCC--cEEEEEecCCcccceec
Confidence 9887664222100 000000 00 00011235689999999887765444 45666887766666543
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=150.70 Aligned_cols=211 Identities=17% Similarity=0.141 Sum_probs=128.9
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCC-----hhhhhcC---
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFG-----EEALQSL--- 588 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g-----~~~~~~~--- 588 (771)
|.++..++|.|+++.+.+++|+|+++||+..... ......+.+++ .+..|+.+++++...+. .++....
T Consensus 24 ~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~~--~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~~R~~d~~~~~~~~ 101 (278)
T 2gzs_A 24 TRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDR--LDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESR 101 (278)
T ss_dssp SCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHH--CCHHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCCGGGGT
T ss_pred CceEEEEEECCCCCCCCCCCCEEEEeeChhHHHH--HHHHHHHHhccCCCeEEEEEcCCCCCcCcccccccccCCCCccc
Confidence 6789999999998877788998877777432110 11223455554 68888989987532111 0110000
Q ss_pred -C-------CCccccchhhHHHHH-----HHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 589 -P-------GKVGSQDVNDVLTAI-----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 589 -~-------~~~~~~~~~D~~~~i-----~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
+ .... ....++...+ .++.++..++++|++|+|+||||++++.++.+ |+.|+++++.+|...+..
T Consensus 102 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~~~~~s~~~~~~~ 179 (278)
T 2gzs_A 102 KTDLHSGRFSRKS-GGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSLGRGY 179 (278)
T ss_dssp TCSCC-----CCC-CCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGGSTTH
T ss_pred cccccccCcCCCc-CCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCeEEEeCcchhcCc
Confidence 0 0000 0122222222 23334455788899999999999999999999 999999999998642210
Q ss_pred hhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCcc--------CcHHHHHHH
Q 004141 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV--------PVSNGLQYA 727 (771)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v--------p~~~~~~~~ 727 (771)
. .+. .......+. ..-..|+++.+|+.|..+ +..++++++
T Consensus 180 ~---------~~~--------------------~~~~~~~~~---~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~ 227 (278)
T 2gzs_A 180 D---------ALL--------------------SRVTAVEPL---QFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTL 227 (278)
T ss_dssp H---------HHH--------------------HHHHTSCTT---TTTTCEEEEEECCC-----------CHHHHHHHHH
T ss_pred c---------hHH--------------------HHHHHhhcc---CCCCCcEEEEecCccccccccchhhhhHHHHHHHH
Confidence 0 000 000000000 112468999999999864 468899999
Q ss_pred HHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 728 RALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 728 ~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++|++.|+++++.++|+++|.... ...+...+.||.+
T Consensus 228 ~~L~~~g~~~~~~~~~g~~H~~~~----~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 228 TILKDKGVNAVFWDFPNLGHGPMF----NASFRQALLDISG 264 (278)
T ss_dssp HHHHHTTCCEEEEECTTCCHHHHH----HHHHHHHHHHHTT
T ss_pred HHHHcCCCeeEEEEcCCCCccchh----HHHHHHHHHHHhh
Confidence 999999999999999999997431 1223445667653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-13 Score=145.09 Aligned_cols=261 Identities=11% Similarity=0.015 Sum_probs=155.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC-cccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|||||+++++.... ...++.++ ..++....+.... ..++ .....+.|||||++|++.......
T Consensus 36 ~~~~~~s~dg~~l~v~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~-- 105 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNK---SESLVKIDLVTGETLGRIDLSTPEERV-----KSLFGAALSPDGKTLAIYESPVRL-- 105 (337)
T ss_dssp CCCEEECTTSSEEEEEETT---TTEEEEEETTTCCEEEEEECCBTTEEE-----ECTTCEEECTTSSEEEEEEEEEEE--
T ss_pred ccceEEcCCCCEEEEEeCC---CCeEEEEECCCCCeEeeEEcCCccccc-----ccccceEECCCCCEEEEEeccccc--
Confidence 5678999999998776542 23566666 4555544444322 0000 012589999999998886422100
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.++|. ......|+++|+.+++.... .+....+..++|||||+. |
T Consensus 106 --------------------------~~~~~----~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T 1pby_B 106 --------------------------ELTHF----EVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------CSSCE----EECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------ccccc----cccCceEEEEECCCCcEEEE--EeCCCCcceeEECCCCCE----E
Confidence 00000 00237899999998877655 333445678899999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++.+ ..|+++|+ .+++...............|+|||+.|++.....
T Consensus 150 ~~~~-----------------~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 150 YGLG-----------------RDLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEES-----------------SSEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEeC-----------------CeEEEEEC-----------------CCCcEeeeeeccccCCCceeCCCccEEeeeccCC
Confidence 7762 16899998 6665443322222223458999999876554332
Q ss_pred CCC----------CC---CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 339 SVD----------SG---AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 339 ~~~----------~g---~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
... .| +......|+++|+.+++...+.... ....+..++|+|||++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------------------MDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE------------------CSSCEEEEEECTTSSEEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC------------------CCCceeeEEECCCCCEEEE
Confidence 100 00 0001125788888876542110000 0012235789999998876
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
. ...|+.+|+++++...............|++||+.|++.. ....|.+.++.++
T Consensus 258 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----~~~~i~v~d~~~~ 311 (337)
T 1pby_B 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG----ALGDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES----BSSEEEEEETTTC
T ss_pred e-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEc----CCCcEEEEECcCC
Confidence 6 2578899999988765543333345678999999887752 2466888887554
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=144.34 Aligned_cols=267 Identities=11% Similarity=0.114 Sum_probs=148.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+ |+++... ...+.++++++..+ ..+++... .........++|||||++|++..... +.-.+|.
T Consensus 47 ~spdg~-l~~~~~~------~~~~~v~~~~~~~g--~~~~~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~ 114 (347)
T 3hfq_A 47 LSAKDC-LYSVDKE------DDEGGIAAWQIDGQ--TAHKLNTV--VAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMK 114 (347)
T ss_dssp ECTTCE-EEEEEEE------TTEEEEEEEEEETT--EEEEEEEE--EEESCCCSEEEEETTTTEEEEEETTT-TEEEEEE
T ss_pred EccCCe-EEEEEec------CCCceEEEEEecCC--cEEEeeee--ecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEE
Confidence 367998 5444321 12467888887432 33333321 11113466789999999997765432 3344555
Q ss_pred EecCCcceEEEecCCcccccc--cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 129 LWSQSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+..++....+........+.. ........++|||||+ |+.. ..
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~-~~--------------------------------- 159 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI-DL--------------------------------- 159 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE-ET---------------------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE-eC---------------------------------
Confidence 544444444433321110000 0001124689999999 5443 22
Q ss_pred CcCcccCCccCceEEEEEcc-CCceeecc--CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 207 DWGETYAGKRQPSLFVININ-SGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~-~~~~~~l~--~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
....|++|++. +++...+. ..+....+..++|||||+. |+++.. ....|+
T Consensus 160 ---------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~--------------~~~~v~ 212 (347)
T 3hfq_A 160 ---------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY----AFLAGE--------------LSSQIA 212 (347)
T ss_dssp ---------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred ---------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE----EEEEeC--------------CCCEEE
Confidence 22578899987 56554331 0222335667899999997 766542 122455
Q ss_pred EEecccccchhhhhhhhcCCCCCCcceec---CCC------CccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 284 AVRVSLYKSEASELELKESSSEDLPVVNL---TES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---t~~------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
+++++. .+++.+.+ ... ......++|||||++|+...... ..|.++
T Consensus 213 v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----------~~v~v~ 267 (347)
T 3hfq_A 213 SLKYDT---------------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----------NTLAVF 267 (347)
T ss_dssp EEEEET---------------TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----------TEEEEE
T ss_pred EEEecC---------------CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----------CEEEEE
Confidence 555521 23433221 111 12366789999999887665432 357777
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
++...+... .+..+.. .+ ..+..++|+|||++|++.....+...+|.+|.++|+++.+..
T Consensus 268 ~~~~~g~~~-------~~~~~~~--~~-------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 268 AVTADGHLT-------LIQQIST--EG-------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EECGGGCEE-------EEEEEEC--SS-------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EECCCCcEE-------EeEEEec--CC-------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 775322110 1111110 01 124567899999988877666678889999999999887653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-12 Score=136.83 Aligned_cols=265 Identities=11% Similarity=0.053 Sum_probs=165.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
++||+.|+... .+.+.+|++....... .+...........+...+|+|||+.|+.....+ .+.+
T Consensus 60 ~~~~~~l~~~~----------dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~ 123 (337)
T 1gxr_A 60 SNPTRHVYTGG----------KGCVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSI 123 (337)
T ss_dssp CSSSSEEEEEC----------BSEEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEE
T ss_pred ecCCcEEEEcC----------CCeEEEEECCCCCcee-eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEE
Confidence 56777777642 2467777775433211 111100011225588899999999998875543 3445
Q ss_pred e--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 130 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 130 ~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
| ..++......... ..+ .+..+.|+|||+.|+..+.
T Consensus 124 ~d~~~~~~~~~~~~~~-~~~------~i~~~~~~~~~~~l~~~~~----------------------------------- 161 (337)
T 1gxr_A 124 WDLAAPTPRIKAELTS-SAP------ACYALAISPDSKVCFSCCS----------------------------------- 161 (337)
T ss_dssp EECCCC--EEEEEEEC-SSS------CEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred EECCCCCcceeeeccc-CCC------ceEEEEECCCCCEEEEEeC-----------------------------------
Confidence 5 2333222222211 111 1258999999998887643
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...|++||+.+++..... ......+..+.|+|||+. |+..+ .+..|+++|+
T Consensus 162 ---------dg~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~~~d~ 212 (337)
T 1gxr_A 162 ---------DGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWDL 212 (337)
T ss_dssp ---------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET
T ss_pred ---------CCcEEEEeCCCCceeeee-ecccCceEEEEECCCCCE----EEEEe---------------cCCcEEEEEC
Confidence 257899999888765441 234456888999999987 77655 3347889998
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++..........+....|||||+.|+..+.+. .|+++|+.+++...+..
T Consensus 213 -----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------~i~~~~~~~~~~~~~~~- 263 (337)
T 1gxr_A 213 -----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-----------NVEVLHVNKPDKYQLHL- 263 (337)
T ss_dssp -----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTSSCEEEECC-
T ss_pred -----------------CCCceEeeecCCCceEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCCeEEEcC-
Confidence 5555544444556688899999999998776542 48899987755321110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEE
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l 447 (771)
....+..+.|+||++.|+ +...++ .|..+++.+++..........+....|+++++.|
T Consensus 264 -------------------~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 321 (337)
T 1gxr_A 264 -------------------HESCVLSLKFAYCGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp -------------------CSSCEEEEEECTTSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred -------------------CccceeEEEECCCCCEEE-EecCCC--cEEEEECCCCeEEEEecCCCcEEEEEECCCCCEE
Confidence 011245678999999665 444444 4555688888777555444455667889999877
Q ss_pred EEEEe
Q 004141 448 IAVSS 452 (771)
Q Consensus 448 ~~~~~ 452 (771)
+....
T Consensus 322 ~~~~~ 326 (337)
T 1gxr_A 322 VTGSG 326 (337)
T ss_dssp EEEET
T ss_pred EEecC
Confidence 66553
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.56 E-value=5.7e-13 Score=141.45 Aligned_cols=269 Identities=13% Similarity=0.052 Sum_probs=150.2
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC--CCCeEEEEec-CCcceEEEecCCccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--ESPIQFELWS-QSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~g~ 148 (771)
..++++.++...++..+++.. ........+|||||++|++.....+ +.-.+|.+.. ++..+.+........
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-- 100 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-- 100 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS--
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC--
Confidence 456666665555554444322 1234566899999999988776521 3334466663 355555544321110
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
....+++ ||++|+..... ...+.+|++...
T Consensus 101 -----~p~~~~~--dg~~l~~~~~~-------------------------------------------~~~v~~~~~~~~ 130 (361)
T 3scy_A 101 -----DPCYLTT--NGKNIVTANYS-------------------------------------------GGSITVFPIGQD 130 (361)
T ss_dssp -----CEEEEEE--CSSEEEEEETT-------------------------------------------TTEEEEEEBCTT
T ss_pred -----CcEEEEE--CCCEEEEEECC-------------------------------------------CCEEEEEEeCCC
Confidence 0024455 89877765321 256777777543
Q ss_pred -ceeecc---CCCC---------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 229 -EVQAVK---GIPK---------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 229 -~~~~l~---~~~~---------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
.+..+. .... ...+..++|||||+. |++... ....|++++++.
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~--------------~~~~v~v~~~~~------ 186 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY----LLADDL--------------GTDQIHKFNINP------ 186 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE----EEEEET--------------TTTEEEEEEECT------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE----EEEEeC--------------CCCEEEEEEEcC------
Confidence 222210 0000 112356899999997 776652 122566666521
Q ss_pred hhhhhcCCCCCC----c-c-------eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 296 ELELKESSSEDL----P-V-------VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 296 ~~~~~~~~~~~~----~-~-------~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.++ + . ............++|||||++|++..... ..|.++++.++....
T Consensus 187 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 187 ---------NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------GTVIAFRYADGMLDE 247 (361)
T ss_dssp ---------TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------CEEEEEEEETTEEEE
T ss_pred ---------CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------CeEEEEEecCCceEE
Confidence 222 2 1 11122333467899999999887766432 358888877554311
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-CCeeEEEEEECCCCcEEEecC--CCCCceeeEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP--AESNFSWSLL 440 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~-~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~ 440 (771)
+. .+.... ..+. ....++|||||++|+++... .+...+|.++..+|+++.+.. .........|
T Consensus 248 ~~-------~~~~~~--~~~~-----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 313 (361)
T 3scy_A 248 IQ-------TVAADT--VNAQ-----GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFII 313 (361)
T ss_dssp EE-------EEESCS--SCCC-----CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEE
T ss_pred eE-------EEecCC--CCCC-----CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEE
Confidence 10 000000 1111 12367899999988776655 567788888777887665432 1223455789
Q ss_pred eecCCEEEEEEeC
Q 004141 441 TLDGDNIIAVSSS 453 (771)
Q Consensus 441 s~dg~~l~~~~~~ 453 (771)
+|||++|++....
T Consensus 314 spdg~~l~~~~~~ 326 (361)
T 3scy_A 314 TPNGKYLLVACRD 326 (361)
T ss_dssp CTTSCEEEEEETT
T ss_pred CCCCCEEEEEECC
Confidence 9999988876643
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-15 Score=148.73 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=129.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|..+++... +. +...|+||++||.+.+ ...|...+..|+ .+|.|+++|+|| ||.+... . ....
T Consensus 12 ~g~~l~y~~~-~~----G~~~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrG---hG~S~~~--~---~~~~ 75 (276)
T 2wj6_A 12 FDNKLSYIDN-QR----DTDGPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRG---HGLSPSE--V---PDFG 75 (276)
T ss_dssp TTEEEEEEEC-CC----CCSSCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTT---CSSSCCC--C---CCCC
T ss_pred CCeEEEEEEe-cC----CCCCCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCC---CCCCCCC--C---CCCC
Confidence 4666765443 11 1234789999997765 446888888886 579999999999 5555321 1 1223
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-CCceeEEEecCCccch-----h-hhhcCCCCCcch---
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCNL-----A-LMVGTTDIPDWC--- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-p~~~~~~v~~~p~~~~-----~-~~~~~~~~~~~~--- 666 (771)
++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.... . .+........|.
T Consensus 76 ~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T 2wj6_A 76 YQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWLMWAPKPDFAKSLTLLKDPERWREGT 153 (276)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCCCSSCCHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecccccCCCchHHHHhhhccCcchHHHHH
Confidence 45555444444443 2346899999999999999999999 9999999998753210 0 000000000110
Q ss_pred --hhhhccCCC---------CccCCCCCChhhH----H----HHh-hcCcccccCCCCCcEEEEeeCCCCccC--cHHHH
Q 004141 667 --YVESYGSKG---------KDSFTESPSVEDL----T----RFH-SKSPISHISKVKTPTIFLLGAQDLRVP--VSNGL 724 (771)
Q Consensus 667 --~~~~~~~~~---------~~~~~~~~~~~~~----~----~~~-~~sp~~~~~~i~~P~lii~G~~D~~vp--~~~~~ 724 (771)
....+.... ...... ...... . .+. ..++...+.++++|+++++|..|...+ .....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lv~~~~~~~~~~~~~~~~~ 232 (276)
T 2wj6_A 154 HGLFDVWLDGHDEKRVRHHLLEEMAD-YGYDCWGRSGRVIEDAYGRNGSPMQMMANLTKTRPIRHIFSQPTEPEYEKINS 232 (276)
T ss_dssp HHHHHHHHTTBCCHHHHHHHHTTTTT-CCHHHHHHHHHHHHHHHHHHCCHHHHHHTCSSCCCEEEEECCSCSHHHHHHHH
T ss_pred HHHHHHhhcccchHHHHHHHHHHhhh-cchhhhhhccchhHHHHhhccchhhHHhhcCCCceEEEEecCccchhHHHHHH
Confidence 000000000 000000 000000 0 000 012234567789999998874443322 12223
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.+.+. -...+++++|++||....+ ....+...+.+||++
T Consensus 233 ~~~~~----~p~a~~~~i~~~gH~~~~e-~P~~~~~~i~~Fl~~ 271 (276)
T 2wj6_A 233 DFAEQ----HPWFSYAKLGGPTHFPAID-VPDRAAVHIREFATA 271 (276)
T ss_dssp HHHHH----CTTEEEEECCCSSSCHHHH-SHHHHHHHHHHHHHH
T ss_pred HHHhh----CCCeEEEEeCCCCCccccc-CHHHHHHHHHHHHhh
Confidence 33332 2348999999999976543 455788899999975
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-13 Score=144.48 Aligned_cols=245 Identities=11% Similarity=0.104 Sum_probs=158.6
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
...++||+.|+++... .+.|+++++.. ++..+..... ..+...+|||||++|++....+ ..+
T Consensus 37 ~~~s~dg~~l~~~~~~--------d~~i~v~d~~~--~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~---~~v 98 (391)
T 1l0q_A 37 AVISPDGTKVYVANAH--------SNDVSIIDTAT--NNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STL 98 (391)
T ss_dssp EEECTTSSEEEEEEGG--------GTEEEEEETTT--TEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEE
T ss_pred EEECCCCCEEEEECCC--------CCeEEEEECCC--CeEEEEEECC-----CCccceEECCCCCEEEEEECCC---CEE
Confidence 3457799888665422 24777777632 2332222222 3577899999999998765432 235
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
++++ ..++....+...... ..++|+|||++|++...
T Consensus 99 ~v~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~--------------------------------- 135 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNN--------------------------------- 135 (391)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEET---------------------------------
T ss_pred EEEECCCCeEEEEEeCCCCc----------ceEEECCCCCEEEEEeC---------------------------------
Confidence 5544 444444444433333 58999999999877643
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
....|++||+.+++.... ......+..+.|+|||+. |++++. ....|+++
T Consensus 136 ----------~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~~~~~--------------~~~~v~~~ 185 (391)
T 1l0q_A 136 ----------GDKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVI 185 (391)
T ss_dssp ----------TTTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEE
T ss_pred ----------CCCEEEEEECCCCcEEEE--EecCCCcceEEECCCCCE----EEEEeC--------------CCCEEEEE
Confidence 236899999999887666 344445678999999997 766542 23479999
Q ss_pred ecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 286 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
|+ .+++..........+....|+|||++|+....+. ....|+++|+.+++....
T Consensus 186 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~--------~~~~v~~~d~~~~~~~~~- 239 (391)
T 1l0q_A 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR- 239 (391)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE-
T ss_pred EC-----------------CCCeEEEEEecCCCccceEECCCCCEEEEEecCc--------CCCcEEEEECCCCeEEEE-
Confidence 98 6665554444455677899999999988877521 135699999877643111
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
+... ..+..++|+|||+.|+++...++ .+..+|+.++++....
T Consensus 240 ---------~~~~----------~~~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 240 ---------IPVG----------PDPAGIAVTPDGKKVYVALSFXN--TVSVIDTATNTITATM 282 (391)
T ss_dssp ---------EECC----------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred ---------EecC----------CCccEEEEccCCCEEEEEcCCCC--EEEEEECCCCcEEEEE
Confidence 1000 01235689999998877765444 5666798888866543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-13 Score=152.05 Aligned_cols=313 Identities=16% Similarity=0.119 Sum_probs=179.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.|+|... ..+.++++... .....++.. ...+...+|||||++||..+... ...+
T Consensus 27 spdg~~l~~~~~----------~~v~l~~~~~~-~~~~~~~~h-----~~~v~~~~~spdg~~lasg~~d~-----~v~l 85 (611)
T 1nr0_A 27 TPAGDKIQYCNG----------TSVYTVPVGSL-TDTEIYTEH-----SHQTTVAKTSPSGYYCASGDVHG-----NVRI 85 (611)
T ss_dssp CTTSSEEEEEET----------TEEEEEETTCS-SCCEEECCC-----SSCEEEEEECTTSSEEEEEETTS-----EEEE
T ss_pred CCCCCEEEeCCC----------CEEEEecCCCc-ccCeEecCC-----CCceEEEEECCCCcEEEEEeCCC-----CEEE
Confidence 789999998642 14555555322 222223222 25688899999999999876543 5667
Q ss_pred ec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC--CCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 130 WS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP--SKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
|+ .++......+. ...+. +..++|||||+.|+..+..... ....|+. .........+......+.|.
T Consensus 86 Wd~~~~~~~~~~~~~-~~~~~------v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~ 156 (611)
T 1nr0_A 86 WDTTQTTHILKTTIP-VFSGP------VKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDFK 156 (611)
T ss_dssp EESSSTTCCEEEEEE-CSSSC------EEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEEC
T ss_pred eECCCCcceeeEeec-ccCCc------eEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEEC
Confidence 73 22222221111 11122 2699999999999987754321 1112221 11112233344455567788
Q ss_pred CCcCc-ccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 206 EDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~-~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
++... .+++..+..|.+||..+++..... ......+..++|||||+. |+..+ .+..|.+
T Consensus 157 p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~----las~s---------------~D~~i~l 216 (611)
T 1nr0_A 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSL----FASTG---------------GDGTIVL 216 (611)
T ss_dssp SSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEE
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCE----EEEEE---------------CCCcEEE
Confidence 88553 556667789999998877654431 334456889999999997 77665 2346888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc-eecC-------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 285 VRVSLYKSEASELELKESSSEDLPV-VNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt-------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
+|+ .+++. ..+. .+...+...+|||||++|+..+.+. .|.+||+
T Consensus 217 wd~-----------------~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----------~v~lWd~ 268 (611)
T 1nr0_A 217 YNG-----------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----------TIKIWNV 268 (611)
T ss_dssp EET-----------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----------EEEEEET
T ss_pred EEC-----------------CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----------eEEEEeC
Confidence 887 44433 2332 4566788999999999998777653 4778887
Q ss_pred CCCCCCCCcc----------------------ceeeEEecccccCCC---CCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 357 PTNGNFSSLE----------------------KIVDVIPVVQCAEGD---CFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 357 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
.+++...... ..+..+.++...... .+.| +...+..++|+|||+.| ++...++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l-~s~s~D~ 346 (611)
T 1nr0_A 269 ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTL-FSADAEG 346 (611)
T ss_dssp TTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred CCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEE-EEEeCCC
Confidence 7654321000 000011111110000 0001 11234568899999966 4555555
Q ss_pred eeEEEEEECCCCcEEEecCC--CCCceeeEEeecC
Q 004141 412 SQVIISVNVSSGELLRITPA--ESNFSWSLLTLDG 444 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg 444 (771)
...+ +|+.+++...+... ...+....+++++
T Consensus 347 ~v~~--Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 347 HINS--WDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp CEEE--EETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred cEEE--EECCCCceeeecccCCcceEEEEEECCCC
Confidence 5444 58888887665422 2233444566544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=135.45 Aligned_cols=243 Identities=15% Similarity=0.118 Sum_probs=139.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....+|||||++|++..... +.-.+|.+. .++....+...... + ....++|||||++|++....
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~s~dg~~l~~~~~~----- 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESALP--G------SLTHISTDHQGQFVFVGSYN----- 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEECS--S------CCSEEEECTTSSEEEEEETT-----
T ss_pred CCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeeccccccC--C------CCcEEEEcCCCCEEEEEecC-----
Confidence 466789999999998776542 333344444 24454444333211 0 12589999999988776432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccC---CceeeccCCCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS---GEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
...|++||+.. ++.... ......+..++|+|||+.
T Consensus 105 --------------------------------------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~-- 142 (343)
T 1ri6_A 105 --------------------------------------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRT-- 142 (343)
T ss_dssp --------------------------------------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSE--
T ss_pred --------------------------------------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCE--
Confidence 25688888843 333333 333345778899999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cccee-----cCC-CCccccceeecCCC
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-----LTE-SISSAFFPRFSPDG 328 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-----lt~-~~~~~~~p~~SpDG 328 (771)
|++... ....|+++|+ .+ ++... +.. .........|+|||
T Consensus 143 --l~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 143 --LWVPAL--------------KQDRICLFTV-----------------SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp --EEEEEG--------------GGTEEEEEEE-----------------CTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred --EEEecC--------------CCCEEEEEEe-----------------cCCCceeeecccccccCCCCCcceEEECCCC
Confidence 765541 1236888887 33 44332 221 22345678899999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
++|++..... ..|.++++.. +....+ ....... ..+.+ ......++|+|||+.|+++
T Consensus 190 ~~l~~~~~~~----------~~i~~~~~~~~~g~~~~~-----~~~~~~~----~~~~~--~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 190 QYAYCVNELN----------SSVDVWELKDPHGNIECV-----QTLDMMP----ENFSD--TRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp SEEEEEETTT----------TEEEEEESSCTTSCCEEE-----EEEECSC----TTCCS--CCCEEEEEECTTSSEEEEE
T ss_pred CEEEEEeCCC----------CEEEEEEecCCCCcEEEE-----eeccccC----ccccc--cCCccceEECCCCCEEEEE
Confidence 9887776432 3578888753 322110 0011000 00100 0012257899999988776
Q ss_pred eeeCCeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEEe
Q 004141 407 SIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
...++...+|.++..+++.+.+. ..........|+++|+.|++...
T Consensus 249 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 249 DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred ecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecC
Confidence 65556556665554466555442 12222455789999998876553
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-12 Score=136.05 Aligned_cols=248 Identities=12% Similarity=0.096 Sum_probs=157.5
Q ss_pred ceEEEeCCCCCeEEEEecCCC---CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
...++|||||++|++...... ....++.++ ..++..+.+...... ..+.|||||++|++....
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--- 109 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------FGATINNTTQTLWFGNTV--- 109 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------CSEEEETTTTEEEEEETT---
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------ceEEECCCCCEEEEEecC---
Confidence 567899999999966654321 134566666 555655555554433 489999999988775332
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC--------ccceEEEe
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL--------SVGQVVWA 248 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~--------~~~~~~ws 248 (771)
...|+++|+++++........... .+..++|+
T Consensus 110 ----------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (353)
T 3vgz_A 110 ----------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVAD 149 (353)
T ss_dssp ----------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEE
T ss_pred ----------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEEC
Confidence 258999999988864431111111 25678999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCC
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPD 327 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpD 327 (771)
|||+. |++..+. ....|+.+|+ .+++...... .........||||
T Consensus 150 ~dg~~----l~~~~~~-------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~s~d 195 (353)
T 3vgz_A 150 DATNT----VYISGIG-------------KESVIWVVDG-----------------GNIKLKTAIQNTGKMSTGLALDSE 195 (353)
T ss_dssp TTTTE----EEEEEES-------------SSCEEEEEET-----------------TTTEEEEEECCCCTTCCCCEEETT
T ss_pred CCCCE----EEEEecC-------------CCceEEEEcC-----------------CCCceEEEecCCCCccceEEECCC
Confidence 99997 7666521 2347999998 6665544333 3444778899999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
|++|++.... ..|+++|+.+++.... +........ .....++|+|||+.|++..
T Consensus 196 g~~l~~~~~~-----------~~i~~~d~~~~~~~~~----------~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 196 GKRLYTTNAD-----------GELITIDTADNKILSR----------KKLLDDGKE-----HFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTEEEEECTT-----------SEEEEEETTTTEEEEE----------EECCCSSSC-----CCEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEcCC-----------CeEEEEECCCCeEEEE----------EEcCCCCCC-----cccceEEECCCCCEEEEEe
Confidence 9998776542 3588999887653211 111000000 0123468999999887665
Q ss_pred eeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 408 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
. ....|+.+|+.+++......... .....|+++|+.++++.... ..+++.+..+
T Consensus 250 ~--~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~ 303 (353)
T 3vgz_A 250 S--KAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQA---GKVSVIDAKS 303 (353)
T ss_dssp S--SSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTT---TEEEEEETTT
T ss_pred C--CCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCC---CeEEEEECCC
Confidence 3 34568888998888665443322 23478999999887765432 4677777543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-13 Score=149.68 Aligned_cols=290 Identities=9% Similarity=-0.019 Sum_probs=175.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
...++||| ++++++....+ ..+..++ ..++..+.+.... ... +....+.|+|||+.++....+....
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~---~~i~~~d~~~g~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~~s~~~d~~v~ 194 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED---EGMDVLDINSGQTVRLSPPEKYKKKL------GFVETISIPEHNELWVSQMQANAVH 194 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS---SSEEEEETTTCCEEEECCCHHHHTTC------CEEEEEEEGGGTEEEEEEGGGTEEE
T ss_pred ceEEEEeC-CCeEEEEeCCC---CeEEEEECCCCeEeeecCcccccccC------CceeEEEEcCCCEEEEEECCCCEEE
Confidence 45789999 55666665432 2354444 4444444332211 111 1225789999998766655443221
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCc-cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.|+............+........|+++....++.. ....|++||+.+++.... ......+..++|+|||+.
T Consensus 195 --~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~--- 267 (433)
T 3bws_A 195 --VFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TDKIGLPRGLLLSKDGKE--- 267 (433)
T ss_dssp --EEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CCCCSEEEEEEECTTSSE---
T ss_pred --EEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ecCCCCceEEEEcCCCCE---
Confidence 232211111111112223334566788755554333 467999999998887666 455556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|++.+...+.. ...+..|+++|+ .+++.............+.|+|||+.|++...
T Consensus 268 -l~~~~~~~~~~-------~~~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 268 -LYIAQFSASNQ-------ESGGGRLGIYSM-----------------DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp -EEEEEEESCTT-------CSCCEEEEEEET-----------------TTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred -EEEEECCCCcc-------ccCCCeEEEEEC-----------------CCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 77776432210 012447999998 66655544444446778999999998877764
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe----
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---- 412 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~---- 412 (771)
.+ ..|++||+.+++.... +.. ...+..++|+|||+.|++.....+.
T Consensus 323 ~~----------~~v~v~d~~~~~~~~~----------~~~----------~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 323 CC----------SKIEVYDLKEKKVQKS----------IPV----------FDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TT----------TEEEEEETTTTEEEEE----------EEC----------SSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CC----------CEEEEEECCCCcEEEE----------ecC----------CCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 43 4689999886543211 100 0123467899999988777654332
Q ss_pred --------eEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 413 --------QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 413 --------~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
..|+.+|+.+++...............|+++|+.|++..... ..+++.++
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d---~~i~v~~~ 430 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLD---HQIRVYRR 430 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTT---TEEEEEEE
T ss_pred cccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCC---CeEEEEEe
Confidence 379999999998776655444456678999999887665322 34555554
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=136.40 Aligned_cols=224 Identities=15% Similarity=0.133 Sum_probs=148.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+....|+|++..++..+... .+.+|+ .++..+.+.. ...+ ..++|||||+.|+..+.
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~g~~--- 142 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQIKSIDAGPVDA----------WTLAFSPDSQYLATGTH--- 142 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCC----------CCEEECTTSSEEEEECT---
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCCCccE----------EEEEECCCCCEEEEEcC---
Confidence 5578899999999888765543 566673 3333333322 1122 58999999999988532
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
...+.+||+.+++..... ......+..++|+|||+.
T Consensus 143 -----------------------------------------dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~-- 178 (321)
T 3ow8_A 143 -----------------------------------------VGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKY-- 178 (321)
T ss_dssp -----------------------------------------TSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSSE--
T ss_pred -----------------------------------------CCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCCE--
Confidence 357889999887654431 233345778999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ .+..|.++|+ .+++ ...+..+...+.+.+|||||+.|+..
T Consensus 179 --lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 224 (321)
T 3ow8_A 179 --LASGA---------------IDGIINIFDI-----------------ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA 224 (321)
T ss_dssp --EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCCCEEEECTTSCEEEEE
T ss_pred --EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEcccCCceeEEEEcCCCCEEEEE
Confidence 77765 2347888898 5554 45566667778999999999988877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+.+. .|.+||+.+++......+ +...+..++|+|||+.| ++...++...
T Consensus 225 s~dg-----------~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~~~~l-~s~s~D~~v~ 273 (321)
T 3ow8_A 225 SDDG-----------YIKIYDVQHANLAGTLSG-------------------HASWVLNVAFCPDDTHF-VSSSSDKSVK 273 (321)
T ss_dssp CTTS-----------CEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTSCEE
T ss_pred cCCC-----------eEEEEECCCcceeEEEcC-------------------CCCceEEEEECCCCCEE-EEEeCCCcEE
Confidence 6553 488899876543211000 01124567899999865 4555566555
Q ss_pred EEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEE
Q 004141 415 IISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 415 l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|| |+.+++... +......+....|+++++.|+...
T Consensus 274 iw--d~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 274 VW--DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp EE--ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EE--eCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 55 777776554 334444556678899998776554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-12 Score=135.72 Aligned_cols=257 Identities=9% Similarity=0.007 Sum_probs=147.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|++.... ...+.+++++...+....+...... ......+|||||++|++....+ +.-.+|.
T Consensus 45 ~spdg~~l~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-~~i~~~d 112 (343)
T 1ri6_A 45 VSPDKRYLYVGVRP--------EFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDHQGQFVFVGSYNA-GNVSVTR 112 (343)
T ss_dssp ECTTSSEEEEEETT--------TTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEeecC--------CCeEEEEEecCCCCceeeccccccC---CCCcEEEEcCCCCEEEEEecCC-CeEEEEE
Confidence 46789887776432 1356666665333333333221111 2467789999999987765432 3233333
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
+. .+............ . ....+.|||||++|+....
T Consensus 113 ~~-~~~~~~~~~~~~~~-~------~~~~~~~s~dg~~l~~~~~------------------------------------ 148 (343)
T 1ri6_A 113 LE-DGLPVGVVDVVEGL-D------GCHSANISPDNRTLWVPAL------------------------------------ 148 (343)
T ss_dssp EE-TTEEEEEEEEECCC-T------TBCCCEECTTSSEEEEEEG------------------------------------
T ss_pred CC-CCccccccccccCC-C------CceEEEECCCCCEEEEecC------------------------------------
Confidence 32 33222222211110 0 1258899999998876532
Q ss_pred CcccCCccCceEEEEEccC-Cceeecc----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 209 GETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~-~~~~~l~----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
....|++||+.+ ++...+. ..+....+..++|+|||+. |+++.. ....|.
T Consensus 149 -------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~----l~~~~~--------------~~~~i~ 203 (343)
T 1ri6_A 149 -------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVNE--------------LNSSVD 203 (343)
T ss_dssp -------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEET--------------TTTEEE
T ss_pred -------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE----EEEEeC--------------CCCEEE
Confidence 225789999987 6654220 0223335667899999997 766642 223677
Q ss_pred EEecccccchhhhhhhhcCCCCCCccee------cCCC---CccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 284 AVRVSLYKSEASELELKESSSEDLPVVN------LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~------lt~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
+++++. .+++.+. +... ......++|||||++|++....+ ..|.++
T Consensus 204 ~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~----------~~i~v~ 258 (343)
T 1ri6_A 204 VWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLITVF 258 (343)
T ss_dssp EEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEEEE
T ss_pred EEEecC---------------CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC----------CEEEEE
Confidence 777621 2232211 1111 12344689999999886655332 458888
Q ss_pred ecCC--CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 355 DWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 355 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
|+.. +..+.+ ..+.. . ..+..++|+|||+.|++....++...+|.+|.++|+++.+.
T Consensus 259 d~~~~~~~~~~~--------~~~~~--~--------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 259 SVSEDGSVLSKE--------GFQPT--E--------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EECTTSCCEEEE--------EEEEC--S--------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCceEEe--------eeecC--C--------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 8763 222111 11100 0 12457889999998887766678888999999998877654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=156.54 Aligned_cols=263 Identities=17% Similarity=0.149 Sum_probs=167.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||+.|+.....+ .+.+| ..+...+.... ... ..+++|||||+.|+....+...
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~~~~~----------v~~~~~s~~g~~l~~~~~dg~v 368 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLTGHSSS----------VWGVAFSPDGQTIASASDDKTV 368 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCSSC----------EEEEEECTTSSEEEEEETTSEE
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEeCCCCC----------EEEEEECCCCCEEEEEeCCCEE
Confidence 4577889999999998876543 45566 33332222221 112 2588999999999987765432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+. ..........+........|++|....+++.....|.+||..+.....+ ......+..++||||++.
T Consensus 369 ~--~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~--- 440 (577)
T 2ymu_A 369 K--LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDDQT--- 440 (577)
T ss_dssp E--EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE--ECCSSCEEEEEECTTSSE---
T ss_pred E--EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe--cCCCCCeEEEEECCCCCE---
Confidence 2 2221 1111111122233334566888865556666678999999876666666 344556788999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ .+..|.++|+ .+.....+..+...+...+|||||+.|+..+.
T Consensus 441 -l~~~~---------------~d~~v~~w~~-----------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 441 -IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp -EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEET
T ss_pred -EEEEc---------------CCCEEEEEEC-----------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 77665 2336778887 55666777777778899999999999987765
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+. .|.+||..+ +..+ .+.. +...+..++|||||+.| ++...++...||
T Consensus 488 d~-----------~i~iw~~~~-~~~~----------~~~~---------h~~~v~~l~~s~dg~~l-~s~~~dg~v~lw 535 (577)
T 2ymu_A 488 DK-----------TVKLWNRNG-QLLQ----------TLTG---------HSSSVRGVAFSPDGQTI-ASASDDKTVKLW 535 (577)
T ss_dssp TS-----------EEEEEETTS-CEEE----------EEEC---------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred CC-----------EEEEEcCCC-CEEE----------EEeC---------CCCCEEEEEEcCCCCEE-EEEECcCEEEEE
Confidence 42 478888543 2111 0000 11234567899999966 455555555555
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|..+..+..+......+....|++||+.|+...
T Consensus 536 --d~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 536 --NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp --CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred --eCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 665444555655555566678999999877544
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=144.35 Aligned_cols=120 Identities=14% Similarity=0.208 Sum_probs=80.2
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
+.+|.+++.... + ..|.||++||.+.+ ...|...+..| ..+|.|+++|+|| +|.+...........
T Consensus 11 ~~~~~~~~~~~~------g--~g~~~vllHG~~~~--~~~w~~~~~~l-~~~~~vi~~Dl~G---~G~s~~~~~~~~~~~ 76 (291)
T 3qyj_A 11 DTTEARINLVKA------G--HGAPLLLLHGYPQT--HVMWHKIAPLL-ANNFTVVATDLRG---YGDSSRPASVPHHIN 76 (291)
T ss_dssp ECSSCEEEEEEE------C--CSSEEEEECCTTCC--GGGGTTTHHHH-TTTSEEEEECCTT---STTSCCCCCCGGGGG
T ss_pred ecCCeEEEEEEc------C--CCCeEEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEcCCC---CCCCCCCCCCccccc
Confidence 345677765432 1 24679999998765 34676667777 4689999999999 554432111101111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
...+++.+.+..+++. ...+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (291)
T 3qyj_A 77 YSKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130 (291)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred cCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCC
Confidence 2344444444444443 23468999999999999999999999999999988753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=136.23 Aligned_cols=275 Identities=12% Similarity=0.064 Sum_probs=147.0
Q ss_pred EEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec---CCccccc
Q 004141 73 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV---PQTVHGS 148 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~g~ 148 (771)
.++++.++...+...+++... .......++|||||+ |+++.... +...++.+. .++..+.+... ....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~---~~~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p--- 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLA---ATQNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPP--- 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEE---ECSCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCC---
T ss_pred CEEEEEEcCCCCeEEEeeeee---ccCCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCC---
Confidence 455555544444433322111 113456789999999 76655432 233455444 45554444432 2222
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-C
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-S 227 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~ 227 (771)
..++|||||++|++.... ...+.+|++. +
T Consensus 89 -------~~~a~spdg~~l~~~~~~-------------------------------------------~~~v~v~~~~~~ 118 (347)
T 3hfq_A 89 -------AYVAVDEARQLVYSANYH-------------------------------------------KGTAEVMKIAAD 118 (347)
T ss_dssp -------SEEEEETTTTEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEECCCCCEEEEEeCC-------------------------------------------CCEEEEEEeCCC
Confidence 588999999988876432 2467777774 4
Q ss_pred CceeeccC--CC--------CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 228 GEVQAVKG--IP--------KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 228 ~~~~~l~~--~~--------~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
+..+.+.. .. ....+..++|+|||+ +++... ....|+++++.
T Consensus 119 g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-----l~v~~~--------------~~~~v~~~~~~--------- 170 (347)
T 3hfq_A 119 GALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-----LAVIDL--------------GSDKVYVYNVS--------- 170 (347)
T ss_dssp SCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-----EEEEET--------------TTTEEEEEEEC---------
T ss_pred CCeeecceeecCCCCCCccccCCCceEEEECCCCc-----EEEEeC--------------CCCEEEEEEEC---------
Confidence 44433310 11 111345689999998 444431 22368888872
Q ss_pred hhhcCCCCCCcceecC---C-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC--CCCCCCccceeeE
Q 004141 298 ELKESSSEDLPVVNLT---E-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDV 371 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt---~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~ 371 (771)
.+++...+. . .......++|||||++|++..... ..+.++++.. +....+
T Consensus 171 -------~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~~------- 226 (347)
T 3hfq_A 171 -------DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS----------SQIASLKYDTQTGAFTQL------- 226 (347)
T ss_dssp -------TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEEEETTTTEEEEE-------
T ss_pred -------CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCceEEe-------
Confidence 244433221 1 122355689999999887766442 3456666553 332111
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe---cCCCCCceeeEEeecCCEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~dg~~l~ 448 (771)
..+... ...+.+. .....++|+|||++|+++....+...+|.++. +|+.+.+ ...........|++||++|+
T Consensus 227 -~~~~~~-~~~~~~~--~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~ 301 (347)
T 3hfq_A 227 -GIVKTI-PADYTAH--NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVV 301 (347)
T ss_dssp -EEEESS-CTTCCSC--CEEEEEEECTTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred -eeeeec-CCCCCCC--CcceeEEECCCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence 000000 0011100 01345789999998887766566666666553 3444443 22222345678999999888
Q ss_pred EEEeCCCCCCeEEEEEe
Q 004141 449 AVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 449 ~~~~~~~~p~~l~~~~~ 465 (771)
+...... .+.++++
T Consensus 302 v~~~~~~---~v~v~~~ 315 (347)
T 3hfq_A 302 VVNQNTD---NATLYAR 315 (347)
T ss_dssp EEETTTT---EEEEEEE
T ss_pred EEEcCCC---cEEEEEE
Confidence 7665332 3555443
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=136.68 Aligned_cols=230 Identities=11% Similarity=0.048 Sum_probs=145.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.+...+||||++ |+..+.. + .+.+| ..++....... ..+..+. +.+++|||||++|+..+.+
T Consensus 84 ~v~~~~~s~d~~-l~~~s~d--g---~v~lWd~~~~~~~~~~~~~~~~H~~~------V~~v~~spdg~~l~sgs~d--- 148 (344)
T 4gqb_B 84 GVADLTWVGERG-ILVASDS--G---AVELWELDENETLIVSKFCKYEHDDI------VSTVSVLSSGTQAVSGSKD--- 148 (344)
T ss_dssp CEEEEEEETTTE-EEEEETT--S---EEEEEEECTTSSCEEEEEEEECCSSC------EEEEEECTTSSEEEEEETT---
T ss_pred CEEEEEEeCCCe-EEEEECC--C---EEEEEeccCCCceeEeeccccCCCCC------EEEEEECCCCCEEEEEeCC---
Confidence 478899999964 5554443 2 34455 23333222221 1111122 2689999999999886433
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|.+||+.+++..... ......+..+.|+||++.
T Consensus 149 -----------------------------------------~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~--- 183 (344)
T 4gqb_B 149 -----------------------------------------ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDS--- 183 (344)
T ss_dssp -----------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTT---
T ss_pred -----------------------------------------CeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCC---
Confidence 57899999998865541 334557888999999988
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC--CCccccceeecCCCCEEEE
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~~~p~~SpDG~~l~f 333 (771)
++.++. .+..|.++|+ .+++. ..+.. ....+.+..|+|++..++.
T Consensus 184 -~l~s~s--------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 184 -VFLSCS--------------EDNRILLWDT-----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp -EEEEEE--------------TTSCEEEEET-----------------TSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred -ceeeec--------------cccccccccc-----------------cccceeeeeecceeeccceeeeecCCCCcceE
Confidence 766552 2336888888 55543 33432 2334678999997655443
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
....+ ..|.+||+.+++....... +...+..++|+|||..++++.+.++..
T Consensus 232 sg~~d----------g~v~~wd~~~~~~~~~~~~-------------------h~~~v~~v~fsp~g~~~lasgs~D~~i 282 (344)
T 4gqb_B 232 FGDEN----------GTVSLVDTKSTSCVLSSAV-------------------HSQCVTGLVFSPHSVPFLASLSEDCSL 282 (344)
T ss_dssp EEETT----------SEEEEEESCC--CCEEEEC-------------------CSSCEEEEEECSSSSCCEEEEETTSCE
T ss_pred EeccC----------CcEEEEECCCCcEEEEEcC-------------------CCCCEEEEEEccCCCeEEEEEeCCCeE
Confidence 33322 3588999887664321111 111345678999998777777777766
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 414 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
.|| |+.++++.++......+....|+|+++.++++.+
T Consensus 283 ~vw--d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s 319 (344)
T 4gqb_B 283 AVL--DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVG 319 (344)
T ss_dssp EEE--CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEE
T ss_pred EEE--ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEc
Confidence 665 8889988877665556667789999988877665
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.8e-15 Score=149.48 Aligned_cols=199 Identities=11% Similarity=0.032 Sum_probs=112.3
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..|.||++||.+.. ...|...+..|++ ||.|+++|+|| +|.+... .....++++.+.+..+++.. ...
T Consensus 50 ~~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~ 117 (280)
T 3qmv_A 50 APLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPG---RGLRLRE-----RPYDTMEPLAEAVADALEEH-RLT 117 (280)
T ss_dssp CSEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTT---SGGGTTS-----CCCCSHHHHHHHHHHHHHHT-TCS
T ss_pred CCceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHHh-CCC
Confidence 34889999997765 4467778888866 99999999999 6655321 11223455554444444431 135
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCcee----EEEecCCccchhhhh-cCCCCCcchh---hhhccCCCCc-----cCCCC
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDKFV----AAAARNPLCNLALMV-GTTDIPDWCY---VESYGSKGKD-----SFTES 682 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~~~----~~v~~~p~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~-----~~~~~ 682 (771)
+++.|+||||||.+++.++.++|+++. .+++.+......... .........+ ...++..... .+...
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 789999999999999999998887665 555544322111000 0000000000 0000000000 00000
Q ss_pred CC---hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 683 PS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 683 ~~---~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.. ...........+ ..+..+++|+|+++|++|..++++....+.+.+. ..++++++++ ||....
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~---~~~~~~~~~g-gH~~~~ 264 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTT---GSFLRRHLPG-NHFFLN 264 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBS---SCEEEEEEEE-ETTGGG
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcC---CceEEEEecC-CCeEEc
Confidence 00 000111111111 1246788999999999999999887776655442 2467777875 897654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-13 Score=152.43 Aligned_cols=184 Identities=9% Similarity=0.009 Sum_probs=108.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||++|+-. ...+.+.+|++...... ...+... ..+.+...+|||||++||...... +......+
T Consensus 68 spdg~~lasg---------~~d~~v~lWd~~~~~~~-~~~~~~~---~~~~v~~v~fs~dg~~l~~~~~~~-~~~~~v~~ 133 (611)
T 1nr0_A 68 SPSGYYCASG---------DVHGNVRIWDTTQTTHI-LKTTIPV---FSGPVKDISWDSESKRIAAVGEGR-ERFGHVFL 133 (611)
T ss_dssp CTTSSEEEEE---------ETTSEEEEEESSSTTCC-EEEEEEC---SSSCEEEEEECTTSCEEEEEECCS-SCSEEEEE
T ss_pred CCCCcEEEEE---------eCCCCEEEeECCCCcce-eeEeecc---cCCceEEEEECCCCCEEEEEECCC-CceeEEEE
Confidence 5566665543 34467777777432211 1111111 125688999999999999876543 22234455
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
|+.+.....+. +..+ ....++|+||++. |+..+.+...+ .|+............+..+...+.|++|.
T Consensus 134 wd~~~~~~~l~---gh~~------~v~~v~f~p~~~~~l~s~s~D~~v~--lwd~~~~~~~~~l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 134 FDTGTSNGNLT---GQAR------AMNSVDFKPSRPFRIISGSDDNTVA--IFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp TTTCCBCBCCC---CCSS------CEEEEEECSSSSCEEEEEETTSCEE--EEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred eeCCCCcceec---CCCC------CceEEEECCCCCeEEEEEeCCCeEE--EEECCCCeEeeeeccccCceEEEEECCCC
Confidence 65443322111 1111 2368999999985 77766665433 33321111112233455566677899996
Q ss_pred CcccCCccCceEEEEEccCCceeeccCC------CCCCccceEEEecCCCCCccEEEEEe
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVKGI------PKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~~~------~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
...+++..+..|.+||+.+++....... .....+..++|||||+. |+..+
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~----l~s~s 258 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK----IASAS 258 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE----EEEEE
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE----EEEEe
Confidence 6666677789999999988876544100 23446788999999997 77665
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-14 Score=148.64 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=92.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---------CcEEEEECCCCCCCCChhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------GYSLLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---------G~~Vv~~d~rG~~~~g~~~~ 585 (771)
.-+|..++...+.+. .+..|.||++||.+++ ...|...+..|++. ||.|+++|+|| +|.+..
T Consensus 74 ~i~g~~i~~~~~~~~----~~~~~plll~HG~~~s--~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G---~G~S~~ 144 (388)
T 4i19_A 74 EIDGATIHFLHVRSP----EPDATPMVITHGWPGT--PVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG---FGLSGP 144 (388)
T ss_dssp EETTEEEEEEEECCS----STTCEEEEEECCTTCC--GGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT---SGGGCC
T ss_pred EECCeEEEEEEccCC----CCCCCeEEEECCCCCC--HHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCC---CCCCCC
Confidence 346888987777654 2345789999998776 44677888888775 99999999999 665532
Q ss_pred hcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 586 QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
... .....+++.+.+..+++. ++.++++++||||||.+++.++.++|++++++++.+|..
T Consensus 145 ~~~----~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 145 LKS----AGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp CSS----CCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred CCC----CCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 111 123467777777766665 345689999999999999999999999999999998643
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.4e-13 Score=153.32 Aligned_cols=263 Identities=10% Similarity=0.032 Sum_probs=161.0
Q ss_pred EEecCC-CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCC
Q 004141 45 TFNSGN-GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 123 (771)
Q Consensus 45 ~~~~~s-~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 123 (771)
..+.+| |||++|+|+.+.. +.....||++++.++. +. ++ ..++ .....++|||||+.|+|++......
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~----G~~~~~l~v~dl~~g~-~~--l~-~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMS----GNEVYTIEFKRISDPS-QT--IA-DKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEECTTTTCEEEEEEESS----SSSCEEEEEEETTCTT-CC--CC-CCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred eeeEecCCCCCEEEEEEeCC----CCceEEEEEEECCCCC-Ee--CC-cccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 356678 9999999998753 2334679998874430 21 11 1111 1245689999999999998754333
Q ss_pred -CeEEEEec-CCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 124 -PIQFELWS-QSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 124 -~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.++|.... ++.. +.+...... ..+..+.|||||++|+|.+...
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~--------~~~~~~~~SpDg~~l~~~~~~~------------------------- 292 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNP--------LFSAFMYKAADTNTLCIGSQSP------------------------- 292 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCT--------TCEEEEEECTTSSEEEEEEECS-------------------------
T ss_pred CCEEEEEECCCCchhcEEEEecCCC--------ceEEEEEECCCCCEEEEEecCC-------------------------
Confidence 36777773 3332 223222111 1124789999999999986432
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCC--ce--eeccCCCCCCccceEEEecC---CCCCccEEEEEeecCcceeeee
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSG--EV--QAVKGIPKSLSVGQVVWAPL---NEGLHQYLVFVGWSSETRKLGI 272 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--~~--~~l~~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~~~~~~~g~ 272 (771)
....||++|++++ +. +.+ ++.. ..+.|+|| |+. |+|.++..+
T Consensus 293 ----------------~~~~l~~~d~~~~~~~~~~~~l--~~~~---~~~~~s~~~~~g~~----l~~~t~~~~------ 341 (751)
T 2xe4_A 293 ----------------ETAEVHLLDLRKGNAHNTLEIV--RPRE---KGVRYDVQMHGTSH----LVILTNEGG------ 341 (751)
T ss_dssp ----------------SCEEEEEEESSSCTTCCCEEES--SCCC---TTCCEEEEEETTTE----EEEEECTTT------
T ss_pred ----------------CCceEEEEECCCCCCCceeEEe--ecCC---CCceEEEeeeeCCE----EEEEeCCCC------
Confidence 2378999999886 45 666 4432 23456666 888 999986541
Q ss_pred eeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccc
Q 004141 273 KYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 273 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
....+||.+++ ++ +..+. |........-..|+++++.|+|....+ +..+
T Consensus 342 ----a~~~~L~~~d~-----------------~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~--------g~~~ 392 (751)
T 2xe4_A 342 ----AVNHKLLIAPR-----------------GQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRA--------GLTR 392 (751)
T ss_dssp ----CTTCEEEEEET-----------------TSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEET--------TEEE
T ss_pred ----CCCcEEEEEcC-----------------CCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeC--------CEEE
Confidence 12348999998 43 34344 433333223345677789999988775 2578
Q ss_pred ceeeec-------CCCC-CCCCccceeeEEecccccCCCCCcccccCCCCCCcc----ccCCCEEEEEeeeCC-eeEEEE
Q 004141 351 LHRIDW-------PTNG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW----LSDGCTMLLSSIWGS-SQVIIS 417 (771)
Q Consensus 351 l~~~d~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~----s~Dg~~l~~~~~~~~-~~~l~~ 417 (771)
|+++++ .+++ .+.++.... . ....+.+ ++|++.|+|..+... ...+|.
T Consensus 393 l~~~dl~~~~~~~~~g~~~~~l~l~~~-----------~--------~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~ 453 (751)
T 2xe4_A 393 IWTMMADSQDGVFKAGTGLREVVMEEP-----------I--------FTVHLVESQMLEYEEPTFRMEYSSLATPNTWFD 453 (751)
T ss_dssp EEEEECCTTTSCCCTTTCCEECCCCCS-----------S--------CEEEECGGGCCCTTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEecccccccccCCccceEECCCCc-----------e--------eEEEeccCcccCCCCCEEEEEEeCCCCCCEEEE
Confidence 999996 4443 333211100 0 0011222 557777777765443 457999
Q ss_pred EECCCCcEEEecC
Q 004141 418 VNVSSGELLRITP 430 (771)
Q Consensus 418 ~d~~tg~~~~l~~ 430 (771)
+|+.+++.+.|+.
T Consensus 454 ~d~~~~~~~~l~~ 466 (751)
T 2xe4_A 454 VSPQDHSRTAVKV 466 (751)
T ss_dssp ECTTTCCEEEEEE
T ss_pred EECCCCcEEEEec
Confidence 9999999888764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=137.84 Aligned_cols=235 Identities=13% Similarity=0.166 Sum_probs=164.7
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 106 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 106 ~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
++++|++|+|.... +...+|.+. ++...+++++.. .--+++||++|+|+.....+...
T Consensus 21 ~~~~g~~iy~~n~~--d~~~ly~~~~dg~~~~~l~~~~--------------~~~i~~~g~~Iyy~~~~~~~~~~----- 79 (302)
T 3s25_A 21 FCESDGEVFFSNTN--DNGRLYAMNIDGSNIHKLSNDT--------------AMYINADKNYVYYVRNNNQKITS----- 79 (302)
T ss_dssp EEEETTEEEEEEGG--GTTEEEEEETTSCSCEEEEEEE--------------EEEEEECSSEEEEEEECC----------
T ss_pred EEEeCCEEEEEeCC--CCceEEEEcCCCCCCEEccCCc--------------eeeEEEcCCEEEEEECCCCcccc-----
Confidence 46799999887653 346799999 666777777632 33478999999999865421100
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeec
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 264 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~ 264 (771)
..+....+..||++++++++.++| .... ...|+|+|++ |+|+...
T Consensus 80 -------------------------~~~~~~n~~~Iy~i~~dg~~~~~l--~~~~----~~~~s~~g~~----Iy~~~~~ 124 (302)
T 3s25_A 80 -------------------------QTFFSYDRNSLCRIKRNGHGSTVL--DPDP----CIYASLIGNY----IYYLHYD 124 (302)
T ss_dssp --------------------------CCSSCCSEEEEEEETTSCCCEEE--ECSC----EEEEEEETTE----EEEEEES
T ss_pred -------------------------cceeccCCCeEEEEeCCCCcceEe--ecCC----ccEEEEeCCE----EEEEeec
Confidence 000011357899999999998888 3322 2379999999 9998621
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
. .....||++++ ++...++|+.+.. +.|+|+|++|+|.+..
T Consensus 125 ~-----------~~~~~Iy~~~~-----------------dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g------- 165 (302)
T 3s25_A 125 T-----------QTATSLYRIRI-----------------DGEEKKKIKNHYL----FTCNTSDRYFYYNNPK------- 165 (302)
T ss_dssp S-----------SSCEEEEEEET-----------------TSCCCEEEESSCC----CCSEEETTEEEEECTT-------
T ss_pred C-----------CCCceEEEEEC-----------------CCCCeEEEeCCCc----eEeeEECCEEEEEeCC-------
Confidence 1 12348999999 7777888887643 5679999999999862
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++++.++..+.+..+. ... +++|+++.|+++....+ .+|++++++++.
T Consensus 166 ---~~~Iy~~~l~g~~~~~l~~~~----------------------~~~-~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~ 218 (302)
T 3s25_A 166 ---NGQLYRYDTASQSEALFYDCN----------------------CYK-PVVLDDTNVYYMDVNRD-NAIVHVNINNPN 218 (302)
T ss_dssp ---TCCEEEEETTTTEEEEEECSC----------------------EEE-EEEEETTEEEEEEGGGT-TEEEEECSSSCC
T ss_pred ---CceEEEEECCCCCEEEEeCCC----------------------ccc-eeeecCCEEEEEEcCCC-cEEEEEECCCCC
Confidence 357999999876654432211 011 25699999998765433 789999999999
Q ss_pred EEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 425 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.+.|+... .+.+++++++|+++..... ..|+++++...
T Consensus 219 ~~~Lt~~~----~~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~ 256 (302)
T 3s25_A 219 PVVLTEAN----IEHYNVYGSLIFYQRGGDN--PALCVVKNDGT 256 (302)
T ss_dssp CEECSCSC----EEEEEEETTEEEEEECSSS--CEEEEEETTSC
T ss_pred eEEEeCCC----cceEEECCCEEEEEECCCC--cEEEEEECCCC
Confidence 88887543 2569999999988754433 78999887643
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-15 Score=163.36 Aligned_cols=228 Identities=15% Similarity=0.146 Sum_probs=140.6
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHHHCC-cEEEEECCC-CCCCCChhhhhcCCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la~~G-~~Vv~~d~r-G~~~~g~~~~~~~~~~ 591 (771)
+.|+ +...+|.|.. ..++.|+||++|||++..... ........|+++| ++|+.+||| |..+++...... ...
T Consensus 79 ~edc--L~l~v~~P~~--~~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 79 SEDC--LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CSCC--CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCC--CEEEEEeCCC--CCCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 3445 4456778874 234589999999988654332 2222355666665 999999999 333343221100 112
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccchhhhhcCCCCCcch
Q 004141 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWC 666 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~~~~~~~~~~~~~~~ 666 (771)
.+...+.|+.++++|+.++ ...|++||+|+|+|+||++++.++... +++|+++|+.+|...+......... ...
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~-~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAAST-AAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHH-HHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHH-HHH
Confidence 2334478999999999875 236899999999999999998887653 5789999999997632211000000 001
Q ss_pred hhhhccCC--CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC
Q 004141 667 YVESYGSK--GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN 744 (771)
Q Consensus 667 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 744 (771)
+...++.. ....+...+. + +.+...+++........|.+++++..|..+.+++..++++..+..++++.+-..++
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~-~--~l~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~~vp~~~g~~~~ 309 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAA-E--DLLKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGAASGIPLLIGTTRD 309 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCH-H--HHHHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTTTTTCCEEEEEETT
T ss_pred HHHHcCCCHHHHHHHHcCCH-H--HHHHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCCCCCCCEEEeeecc
Confidence 11222221 1111111111 1 11111122211112345677889999999999999999888888899999999999
Q ss_pred CCccCCC
Q 004141 745 DVHGIER 751 (771)
Q Consensus 745 ~~H~~~~ 751 (771)
++|.+..
T Consensus 310 Eg~~~~~ 316 (489)
T 1qe3_A 310 EGYLFFT 316 (489)
T ss_dssp GGGGTCC
T ss_pred hhHhhcc
Confidence 9998764
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=143.04 Aligned_cols=104 Identities=23% Similarity=0.450 Sum_probs=72.2
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCcc-ccchhhHHHHHHHHHHcCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~~~d 614 (771)
.|+||++||++.+ ...|...+..|++ .+|.|+++|+|| +|.+.... ...+. ...++|+.+.++.+... +
T Consensus 38 ~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~G---hG~S~~~~-~~~~~~~~~a~dl~~~l~~l~~~--~- 108 (316)
T 3c5v_A 38 GPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRS---HGETKVKN-PEDLSAETMAKDVGNVVEAMYGD--L- 108 (316)
T ss_dssp SCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTT---STTCBCSC-TTCCCHHHHHHHHHHHHHHHHTT--C-
T ss_pred CcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCC---CCCCCCCC-ccccCHHHHHHHHHHHHHHHhcc--C-
Confidence 4789999997654 4467788888876 389999999999 55543211 01111 11245565666655321 1
Q ss_pred CCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~ 650 (771)
.+++.|+||||||.+++.+|.+ +|+ ++++|+.++.
T Consensus 109 ~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 576 8999988764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-12 Score=137.82 Aligned_cols=236 Identities=15% Similarity=0.131 Sum_probs=141.7
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCC---ccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEE
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPF---PVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF 139 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~---~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~ 139 (771)
+..+.....++++++.........+....+ ..........+|||||+++|+.+... ...+.+|+ .++.....
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~---d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV---PAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS---SCEEEEEETTTTEEEEEE
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC---CCEEEEeECCCCcEEEEe
Confidence 334444556666666544432222211111 11112356789999999998876432 23566773 33333333
Q ss_pred ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCce
Q 004141 140 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 219 (771)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 219 (771)
.....+ ..++|||||+.|+..+. ..
T Consensus 174 ~~~~~V----------~~v~fspdg~~l~s~s~---------------------------------------------~~ 198 (365)
T 4h5i_A 174 ETRGEV----------KDLHFSTDGKVVAYITG---------------------------------------------SS 198 (365)
T ss_dssp ECSSCC----------CEEEECTTSSEEEEECS---------------------------------------------SC
T ss_pred CCCCce----------EEEEEccCCceEEeccc---------------------------------------------ee
Confidence 322222 68999999999988632 34
Q ss_pred EEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004141 220 LFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 220 l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
+.+|+..+++... .........+..++|+|||+. ++..+.... ....|+.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~~s~d~~-----------~~~~i~~~~~----------- 252 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV----LIAASLKKG-----------KGIVLTKISI----------- 252 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE----EEEEEESSS-----------CCEEEEEEEE-----------
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE----EEEEecCCc-----------ceeEEeeccc-----------
Confidence 5667766665432 211233446788999999998 877763322 1124666665
Q ss_pred hhcCCCCCCc-----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004141 299 LKESSSEDLP-----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 299 ~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
.... ...+..+...+.+.+|||||+.||..+.+. .|.+||+.+++....
T Consensus 253 ------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----------~V~iwd~~~~~~~~~--------- 306 (365)
T 4h5i_A 253 ------KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----------SIALVKLKDLSMSKI--------- 306 (365)
T ss_dssp ------ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEE---------
T ss_pred ------ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----------EEEEEECCCCcEEEE---------
Confidence 2222 234555666788999999999999887663 488999887654211
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
+.. .+...+..++|||||++| ++.+.++..+||.+..
T Consensus 307 ~~~---------gH~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 307 FKQ---------AHSFAITEVTISPDSTYV-ASVSAANTIHIIKLPL 343 (365)
T ss_dssp ETT---------SSSSCEEEEEECTTSCEE-EEEETTSEEEEEECCT
T ss_pred ecC---------cccCCEEEEEECCCCCEE-EEEeCCCeEEEEEcCC
Confidence 000 011235678999999855 6777788888887643
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=144.67 Aligned_cols=284 Identities=10% Similarity=0.039 Sum_probs=165.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCC-CeEEEEec--CCcc-----eEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENES-PIQFELWS--QSQL-----EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~-~~~~~~~~--~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+..++|||||++||-.+.....- .....+|. .+.. ........ .+.+++|+||++.|+ .
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~----------~V~~~~~s~d~~~l~-~ 111 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEA----------GVTDVAWVSEKGILV-A 111 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSS----------CEEEEEEETTTEEEE-E
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCC----------CEEEEEEcCCCCEEE-E
Confidence 4588999999999999876532100 11223342 1111 01111111 226899999997554 4
Q ss_pred ecCCCCCCCCccCCCCCCCCC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEE
Q 004141 171 AEEPSPSKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ 246 (771)
+.++..+ .|+......... ...+......+.|++|....+++.....|.+||+.+++..... ......+..++
T Consensus 112 s~dg~v~--lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~ 188 (357)
T 4g56_B 112 SDSGAVE--LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVA 188 (357)
T ss_dssp ETTSCEE--EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEE
T ss_pred ECCCEEE--EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEE
Confidence 5444322 344322221111 1123344456678888666677777889999999998765541 23345678899
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ec--CCCCcccccee
Q 004141 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NL--TESISSAFFPR 323 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~l--t~~~~~~~~p~ 323 (771)
|+|+++. ++.++. .+..|.++|+ .+++.. .+ ......+.+.+
T Consensus 189 ~s~~~~~----~~~s~~--------------~dg~v~~wd~-----------------~~~~~~~~~~~~~~~~~v~~v~ 233 (357)
T 4g56_B 189 ACPGKDT----IFLSCG--------------EDGRILLWDT-----------------RKPKPATRIDFCASDTIPTSVT 233 (357)
T ss_dssp ECTTCSS----CEEEEE--------------TTSCEEECCT-----------------TSSSCBCBCCCTTCCSCEEEEE
T ss_pred EccCCCc----eeeeec--------------cCCceEEEEC-----------------CCCceeeeeeeccccccccchh
Confidence 9999986 555442 2336888887 444432 22 23344578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
|+|++..++.....+ ..|.+||+.+++..+.... ....+..++|+||++.+
T Consensus 234 ~sp~~~~~la~g~~d----------~~i~~wd~~~~~~~~~~~~-------------------~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 234 WHPEKDDTFACGDET----------GNVSLVNIKNPDSAQTSAV-------------------HSQNITGLAYSYHSSPF 284 (357)
T ss_dssp ECTTSTTEEEEEESS----------SCEEEEESSCGGGCEEECC-------------------CSSCEEEEEECSSSSCC
T ss_pred hhhcccceEEEeecc----------cceeEEECCCCcEeEEEec-------------------cceeEEEEEEcCCCCCE
Confidence 999976554443332 3588999877654221111 01124567899999877
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEee-cCCEEEEEEeCCCCCCeEEEEEec
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~-dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+++...++...|| |+.++++.+.......+....|+| |++.|+.... + ..|.+-++.
T Consensus 285 lasgs~D~~i~iw--d~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~--D--g~v~iW~~~ 342 (357)
T 4g56_B 285 LASISEDCTVAVL--DADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGW--D--HKVLHHHLP 342 (357)
T ss_dssp EEEEETTSCEEEE--CTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEET--T--SCEEEEECC
T ss_pred EEEEeCCCEEEEE--ECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcC--C--CeEEEEECC
Confidence 7777766665555 888898877765555566678898 6665543332 2 235555554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-12 Score=140.75 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=160.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|||||++|+.....+ .+.+| ..+.....+.... + .+..+.|+|||+.|+..+.+....
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~---~------~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG-----ELRLWNKTGALLNVLNFHR---A------PIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECCCC---S------CEEEEEECTTSSEEEEEETTCCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeeeccCCC---c------cEEEEEECCCCCEEEEEecCCeEE
Confidence 4688999999999998876543 34455 3343333332211 1 126899999999999887655322
Q ss_pred CCCccCCCCCCCCCCccCC---------------CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCN---------------SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 242 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~ 242 (771)
.|+.............. .......|.++ +..+++.....|++||+.+++..... ......+
T Consensus 175 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i 250 (425)
T 1r5m_A 175 --LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPI 250 (425)
T ss_dssp --EEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEE-CCCSSCE
T ss_pred --EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeee-ccCCCce
Confidence 22221111000000000 11334556665 55666667789999999987654431 3344567
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccc
Q 004141 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~ 321 (771)
..+.|+||++. |+..+ .+..|+++|+ ..++ ...+..+...+..
T Consensus 251 ~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~ 294 (425)
T 1r5m_A 251 SVLEFNDTNKL----LLSAS---------------DDGTLRIWHG-----------------GNGNSQNCFYGHSQSIVS 294 (425)
T ss_dssp EEEEEETTTTE----EEEEE---------------TTSCEEEECS-----------------SSBSCSEEECCCSSCEEE
T ss_pred EEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCccceEecCCCccEEE
Confidence 88999999997 77665 2347888887 4443 4555556677899
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
..|+||| .|+..+.+ ..|.+||+.+++.... +.. ....+..++|+||++
T Consensus 295 ~~~~~~~-~l~~~~~d-----------~~i~i~d~~~~~~~~~----------~~~---------~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMD-----------GSVRLWSLKQNTLLAL----------SIV---------DGVPIFAGRISQDGQ 343 (425)
T ss_dssp EEEETTT-EEEEEETT-----------SEEEEEETTTTEEEEE----------EEC---------TTCCEEEEEECTTSS
T ss_pred EEECCCC-EEEEEeCC-----------CcEEEEECCCCcEeEe----------ccc---------CCccEEEEEEcCCCC
Confidence 9999999 66655543 3588999876543211 100 011245678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCc---------------------EEEecCCCC--CceeeEEeecCCEEEEEEe
Q 004141 402 TMLLSSIWGSSQVIISVNVSSGE---------------------LLRITPAES--NFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~---------------------~~~l~~~~~--~~~~~~~s~dg~~l~~~~~ 452 (771)
.|+. ...++...+| ++.+++ +..+..... .+....|+++++.|+....
T Consensus 344 ~l~~-~~~dg~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 344 KYAV-AFMDGQVNVY--DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EEEE-EETTSCEEEE--ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEEE-EECCCeEEEE--ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 6654 4445554555 665555 333443322 4566788888887765543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-13 Score=149.12 Aligned_cols=264 Identities=17% Similarity=0.142 Sum_probs=166.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|+|||+.|+...... .+.+| ..++..+.... ..+ .+..++|+|||+.|+..+.+...+
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~-----~i~~w~~~~~~~~~~~~---h~~------~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDK-----TVKLWNRNGQLLQTLTG---HSS------SVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECC---CSS------CEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEec---CCC------CeEEEEECCCCCEEEEEeCCCeEE
Confidence 4577899999999998776543 35566 44443333321 111 125889999999999887665432
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.|+... ........+........|+++....+.+.....|.+||..+.....+ ......+..++|||||+.
T Consensus 329 --~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~---- 399 (577)
T 2ymu_A 329 --LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT---- 399 (577)
T ss_dssp --EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSC----
T ss_pred --EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 232111 00011111222223456788865566666778899999877666666 344556788999999998
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+..+ .+..|.++|. .+.....+..+...+...+||||++.|+..+.+
T Consensus 400 l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 400 IASAS---------------DDKTVKLWNR-----------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEEE---------------TTSEEEEECT-----------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEe---------------CCCEEEEEeC-----------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 88766 2236777886 555566677777778899999999999877755
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||..+.....+. . +...+..++|+|||+.|+ +...++...||
T Consensus 448 ~-----------~v~~w~~~~~~~~~~~-----------~---------~~~~v~~~~~spd~~~la-s~~~d~~i~iw- 494 (577)
T 2ymu_A 448 K-----------TVKLWNRNGQLLQTLT-----------G---------HSSSVRGVAFSPDGQTIA-SASDDKTVKLW- 494 (577)
T ss_dssp S-----------EEEEEETTSCEEEEEE-----------C---------CSSCEEEEEECTTSCEEE-EEETTSEEEEE-
T ss_pred C-----------EEEEEECCCCEEEEEc-----------C---------CCCCEEEEEEcCCCCEEE-EEeCCCEEEEE-
Confidence 3 4778886432111110 0 011245678999999664 44555555555
Q ss_pred EECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 418 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|..+..++.+......+....|+||++.|+...
T Consensus 495 -~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 495 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp -ETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -cCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 665555556665555566778999999776544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9.2e-13 Score=137.81 Aligned_cols=279 Identities=9% Similarity=-0.007 Sum_probs=171.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
+.+..++|||||+.+++....+ . + ..+ .......+.... ..+ .+..++|+|||+.|+... +...
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~-~---~-~~~~~~~~~~~~~~~~--h~~------~v~~~~~~~~~~~l~~~~-dg~i- 74 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPD-A---L-IGPGIPRHARQINTLN--HGE------VVCAVTISNPTRHVYTGG-KGCV- 74 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTT-S---S-SSTTCCSEEEEEEEEC--CSS------CCCEEEECSSSSEEEEEC-BSEE-
T ss_pred CceeEEEECCCCCEEEeecCCC-c---E-eccccCCccccceecc--CCC------ceEEEEEecCCcEEEEcC-CCeE-
Confidence 3477899999999998764332 1 1 222 222212222111 111 126999999999998876 3322
Q ss_pred CCCccCCCCCCCCCCc-----cCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCC
Q 004141 178 KPTFSLGSTKGGSSDK-----DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg 251 (771)
..|+........... .+........|.++....+++.....|.+||+.+++..... -......+..+.|+||+
T Consensus 75 -~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 75 -KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp -EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS
T ss_pred -EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC
Confidence 234332222111111 22333345668888655666667789999999988732221 02334457789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+. |+..+ .+..|+++|+ .+++ ...+..+...+....|+|||+.
T Consensus 154 ~~----l~~~~---------------~dg~v~~~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~ 197 (337)
T 1gxr_A 154 KV----CFSCC---------------SDGNIAVWDL-----------------HNQTLVRQFQGHTDGASCIDISNDGTK 197 (337)
T ss_dssp SE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CE----EEEEe---------------CCCcEEEEeC-----------------CCCceeeeeecccCceEEEEECCCCCE
Confidence 97 77655 2347888998 4444 4455556677889999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+..+.+ ..|++||+.+++..... . ....+..++|+||++.|++.. .+
T Consensus 198 l~~~~~d-----------g~i~~~d~~~~~~~~~~----------~----------~~~~v~~~~~s~~~~~l~~~~-~~ 245 (337)
T 1gxr_A 198 LWTGGLD-----------NTVRSWDLREGRQLQQH----------D----------FTSQIFSLGYCPTGEWLAVGM-ES 245 (337)
T ss_dssp EEEEETT-----------SEEEEEETTTTEEEEEE----------E----------CSSCEEEEEECTTSSEEEEEE-TT
T ss_pred EEEEecC-----------CcEEEEECCCCceEeee----------c----------CCCceEEEEECCCCCEEEEEc-CC
Confidence 8877654 35889998775532110 0 001245678999999776554 33
Q ss_pred CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 411 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+ .++.+++.+++...+......+....|+++++.|+.... -..+.+.++.+
T Consensus 246 ~--~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~~~~~~ 296 (337)
T 1gxr_A 246 S--NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK----DNLLNAWRTPY 296 (337)
T ss_dssp S--CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTT
T ss_pred C--cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecC----CCcEEEEECCC
Confidence 3 466668888888877766666677789999997765543 23566666543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-12 Score=136.74 Aligned_cols=266 Identities=12% Similarity=0.041 Sum_probs=142.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|++..... ...+.+.+++++...+...++.... .........++ ||++|++....+ +.-.+|.
T Consensus 57 ~spdg~~l~~~~~~~-----~~~~~v~~~~~~~~~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~-~~v~~~~ 126 (361)
T 3scy_A 57 PSADGKFVYSVNEFS-----KDQAAVSAFAFDKEKGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSG-GSITVFP 126 (361)
T ss_dssp ECTTSSEEEEEECCS-----STTCEEEEEEEETTTTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEEEccC-----CCCCcEEEEEEeCCCCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCC-CEEEEEE
Confidence 478998887665321 1224565666655434444443221 00122334445 899886654322 3333444
Q ss_pred EecCCcceE---EEecCC-cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 129 LWSQSQLEK---EFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 129 ~~~~~~~~~---~~~~~~-~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+..++.... ...... +....--......++.|||||++|++...
T Consensus 127 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-------------------------------- 174 (361)
T 3scy_A 127 IGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL-------------------------------- 174 (361)
T ss_dssp BCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET--------------------------------
T ss_pred eCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC--------------------------------
Confidence 433333221 111110 10000000001136899999998887632
Q ss_pred cCCcCcccCCccCceEEEEEccCCc-------e------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 205 EEDWGETYAGKRQPSLFVININSGE-------V------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~-------~------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
....|++|+++... . ..+. .+....+..++|||||+. |+++..
T Consensus 175 -----------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~spdg~~----l~v~~~-------- 230 (361)
T 3scy_A 175 -----------GTDQIHKFNINPNANADNKEKFLTKGTPEAFK-VAPGSGPRHLIFNSDGKF----AYLINE-------- 230 (361)
T ss_dssp -----------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-CCTTCCEEEEEECTTSSE----EEEEET--------
T ss_pred -----------CCCEEEEEEEcCCCCcccccceeeccccccee-cCCCCCCeEEEEcCCCCE----EEEEcC--------
Confidence 12466777665432 1 1111 333445678999999996 665541
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec------CCCCccccceeecCCCCEEEEEecCCCCCCCCc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
....|+++++ .++..+.+ .........++|||||++|+......
T Consensus 231 ------~~~~v~v~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~------- 280 (361)
T 3scy_A 231 ------IGGTVIAFRY-----------------ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK------- 280 (361)
T ss_dssp ------TTCEEEEEEE-----------------ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-------
T ss_pred ------CCCeEEEEEe-----------------cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-------
Confidence 2236777777 44433222 11122346889999999886655431
Q ss_pred cccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCC
Q 004141 346 SATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG 423 (771)
Q Consensus 346 ~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg 423 (771)
...|.++++. ++....+ ..+.. + ..+..++|+|||++|++.....+...+|.+|.++|
T Consensus 281 --~~~i~v~~~~~~~g~~~~~--------~~~~~---g-------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 281 --ADGVAIFKVDETNGTLTKV--------GYQLT---G-------IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp --SCEEEEEEECTTTCCEEEE--------EEEEC---S-------SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred --CCEEEEEEEcCCCCcEEEe--------eEecC---C-------CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 1345666554 4432111 00000 0 12456789999998887776677888999999999
Q ss_pred cEEEecC
Q 004141 424 ELLRITP 430 (771)
Q Consensus 424 ~~~~l~~ 430 (771)
+++.+..
T Consensus 341 ~~~~~~~ 347 (361)
T 3scy_A 341 LLTDIKK 347 (361)
T ss_dssp CEEECSC
T ss_pred cEeecce
Confidence 9887753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=139.25 Aligned_cols=293 Identities=6% Similarity=0.025 Sum_probs=166.6
Q ss_pred CCCCcceEEEEEeech--hhcccceeEEEEEEeecCCCC-ccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 49 GNGNGTQAMFSISQPN--LLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.+|||+.+.++.+... +......+.+.+|++...... ...... ....+..++|||||++|+.....+
T Consensus 20 ~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg----- 89 (416)
T 2pm9_A 20 WSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-----VDSKFNDLDWSHNNKIIAGALDNG----- 89 (416)
T ss_dssp BCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-----CSSCEEEEEECSSSSCEEEEESSS-----
T ss_pred eCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-----cCCceEEEEECCCCCeEEEEccCC-----
Confidence 4678885555432110 001123456777777443211 111111 124588999999999998876543
Q ss_pred EEEEec-CC---cceEEEecCCcccccccCCCcccceeecCC-CCeEEEEecCCCCCCCCccCCCCC------CC---CC
Q 004141 126 QFELWS-QS---QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTK------GG---SS 191 (771)
Q Consensus 126 ~~~~~~-~~---~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~~~~~------~~---~~ 191 (771)
.+.+|+ .. ....+..+. ...+ .+..+.|+|| ++.|+..+.+.... .|+..... .. ..
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~l~s~~~dg~v~--iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFS-NHSS------SVKTVKFNAKQDNVLASGGNNGEIF--IWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECC-CSSS------CCCEEEECSSSTTBEEEECSSSCEE--BCBTTTTSSCTTTCCCBCCCC
T ss_pred eEEEeecccccccccchhhcc-CCcc------ceEEEEEcCCCCCEEEEEcCCCeEE--EEECCCCcccccccccccccc
Confidence 344552 11 112222221 1111 2268999999 77777766554332 33322221 11 11
Q ss_pred CccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCCccEEEEEeecC
Q 004141 192 DKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
...+........|.++.+ ..+++.....|.+||+.+++......... ...+..++|+|||+. +++++..+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~d 236 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST----RVATATGS 236 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT----EEEEEECC
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC----EEEEEECC
Confidence 122344445677888844 34455667889999999887655421221 456889999999976 66665221
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-c-ceecC-CCCccccceeecC-CCCEEEEEecCCCCC
Q 004141 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P-VVNLT-ESISSAFFPRFSP-DGKFLVFLSAKSSVD 341 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~lt-~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~ 341 (771)
+ ....|+++|+ .++ . ...+. .+...+....||| ||+.|+..+.+
T Consensus 237 ~-----------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d---- 284 (416)
T 2pm9_A 237 D-----------NDPSILIWDL-----------------RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD---- 284 (416)
T ss_dssp S-----------SSCCCCEEET-----------------TSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS----
T ss_pred C-----------CCceEEEEeC-----------------CCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCC----
Confidence 1 1126788887 433 2 34444 5667789999999 89988877654
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..|.+||+.+++.... +.. +...+..++|+||+..++++...++...|| ++.
T Consensus 285 -------g~v~~wd~~~~~~~~~----------~~~---------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw--~~~ 336 (416)
T 2pm9_A 285 -------NTVLLWNPESAEQLSQ----------FPA---------RGNWCFKTKFAPEAPDLFACASFDNKIEVQ--TLQ 336 (416)
T ss_dssp -------SEEEEECSSSCCEEEE----------EEC---------SSSCCCCEEECTTCTTEEEECCSSSEEEEE--ESC
T ss_pred -------CCEEEeeCCCCcccee----------ecC---------CCCceEEEEECCCCCCEEEEEecCCcEEEE--Ecc
Confidence 2588999877653211 000 112356789999995566776666666666 554
Q ss_pred CCc
Q 004141 422 SGE 424 (771)
Q Consensus 422 tg~ 424 (771)
+++
T Consensus 337 ~~~ 339 (416)
T 2pm9_A 337 NLT 339 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=143.45 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=129.5
Q ss_pred CceEEEEEEecCCCCC-CCCCcEEEEEcCCCCCCCCCcchHHHHHHHH------CCcEEEEECCCCCCCCChhhhhc---
Q 004141 518 QKPFEAIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQS--- 587 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~-~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~Vv~~d~rG~~~~g~~~~~~--- 587 (771)
|.+...++|.|+++.+ .+++|+|+++||... ........+.+.. .+++||++++.. ...++...
T Consensus 23 ~~~r~~~VylP~~y~~~~~~yPVlylldG~~~---f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~---R~~dytp~~~~ 96 (331)
T 3gff_A 23 KETREYVIALPEGYAQSLEAYPVVYLLDGEDQ---FDHMASLLQFLSQGTMPQIPKVIIVGIHNTN---RMRDYTPTHTL 96 (331)
T ss_dssp TEEEEEEEECCTTGGGSCCCEEEEEESSHHHH---HHHHHHHHHHHTCSSSCSSCCCEEEEECCSS---HHHHSCSSCCS
T ss_pred CCeEEEEEEeCCCCCCCCCCccEEEEecChhh---hHHHHHHHHHHHhhhhcCCCCEEEEEECCCC---cccccCCCccc
Confidence 5678899999998755 688999999999421 0111223344433 358899988621 11111000
Q ss_pred --CCC---------CccccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh
Q 004141 588 --LPG---------KVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654 (771)
Q Consensus 588 --~~~---------~~~~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~ 654 (771)
..+ ..+.....+.+ +.+.++.++..+++.| +|+||||||+++++++.++|+.|+++++.+|.+.+.
T Consensus 97 ~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~~~~~~S~~~w~~ 175 (331)
T 3gff_A 97 VLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFD 175 (331)
T ss_dssp BCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCSEEEEESCCTTTT
T ss_pred cccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhheeeEeCchhcCC
Confidence 000 01111222222 3445666665566555 899999999999999999999999999999974211
Q ss_pred hhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCC-------ccCcHHHHHHH
Q 004141 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-------RVPVSNGLQYA 727 (771)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~-------~vp~~~~~~~~ 727 (771)
. ... ....... .........|+++.+|+.|. .++...+++++
T Consensus 176 ~------------~~~--------------~~~~~~~-----~~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l~ 224 (331)
T 3gff_A 176 S------------PHY--------------LTLLEER-----VVKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAFA 224 (331)
T ss_dssp T------------THH--------------HHHHHHH-----HHHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHHH
T ss_pred h------------HHH--------------HHHHHHH-----hhcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHHH
Confidence 0 000 0000111 11111245799999999999 57778889999
Q ss_pred HHHHhC---CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 728 RALREK---GVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 728 ~~l~~~---g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
+.|+.. |+++++.++|+++|+... ...+...++||
T Consensus 225 ~~Lk~~~~~g~~~~~~~~pg~~H~sv~----~~~~~~~l~~l 262 (331)
T 3gff_A 225 DKLTKLAPKGLGFMAKYYPEETHQSVS----HIGLYDGIRHL 262 (331)
T ss_dssp HHHHHHCCTTEEEEEEECTTCCTTTHH----HHHHHHHHHHH
T ss_pred HHHHhccCCCceEEEEECCCCCccccH----HHHHHHHHHHH
Confidence 999986 678999999999997542 23344445544
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-12 Score=131.91 Aligned_cols=279 Identities=10% Similarity=0.011 Sum_probs=173.7
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... ..+.+.+|++... .....+.. ....+...+|+|||++|+.....+ .+.
T Consensus 40 ~s~~~~~l~~~~---------~dg~i~vwd~~~~-~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~dg-----~i~ 99 (369)
T 3zwl_B 40 YNKEGDLLFSCS---------KDSSASVWYSLNG-ERLGTLDG-----HTGTIWSIDVDCFTKYCVTGSADY-----SIK 99 (369)
T ss_dssp ECTTSCEEEEEE---------SSSCEEEEETTTC-CEEEEECC-----CSSCEEEEEECTTSSEEEEEETTT-----EEE
T ss_pred EcCCCCEEEEEe---------CCCEEEEEeCCCc-hhhhhhhh-----cCCcEEEEEEcCCCCEEEEEeCCC-----eEE
Confidence 366777776643 2346777766332 22222221 225688899999999998876543 455
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+| ..++..........+ ..+.|+|||+.|+......
T Consensus 100 iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~~~-------------------------------- 137 (369)
T 3zwl_B 100 LWDVSNGQCVATWKSPVPV----------KRVEFSPCGNYFLAILDNV-------------------------------- 137 (369)
T ss_dssp EEETTTCCEEEEEECSSCE----------EEEEECTTSSEEEEEECCB--------------------------------
T ss_pred EEECCCCcEEEEeecCCCe----------EEEEEccCCCEEEEecCCc--------------------------------
Confidence 55 344444444433333 6899999999998875431
Q ss_pred CcCcccCCccCceEEEEEccCCce------------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004141 207 DWGETYAGKRQPSLFVININSGEV------------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~------------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
......|.+||+..+.. ..+........+..+.|+|||+. |+..+
T Consensus 138 -------~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~------------ 194 (369)
T 3zwl_B 138 -------MKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY----IIAGH------------ 194 (369)
T ss_dssp -------TTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE----EEEEE------------
T ss_pred -------cCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE----EEEEc------------
Confidence 01236788888766532 11211122226778899999997 77654
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCC--CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSED--LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
....|+++|+ .+ .....+..+...+....|+|||+.|+..+.+ ..|.
T Consensus 195 ---~dg~i~i~d~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~ 243 (369)
T 3zwl_B 195 ---KDGKISKYDV-----------------SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRD-----------TNSF 243 (369)
T ss_dssp ---TTSEEEEEET-----------------TTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----------SEEE
T ss_pred ---CCCEEEEEEC-----------------CCCcEeEEEEecCCCceeEEEECCCCCEEEEecCC-----------ceEE
Confidence 3347888998 43 3345555666778999999999999877654 2588
Q ss_pred eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC-----------eeEEEEEECC
Q 004141 353 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVS 421 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~-----------~~~l~~~d~~ 421 (771)
+||+.+++....... ...+..++|+|+++.+++....++ ...+..+|..
T Consensus 244 v~d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 244 LVDVSTLQVLKKYET--------------------DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EEETTTCCEEEEEEC--------------------SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred EEECCCCceeeeecC--------------------CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 999887654211110 012346789999998877654331 1257777888
Q ss_pred CCcEEEec-CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 422 SGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 422 tg~~~~l~-~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+++..... .....+....|+++++.|+....+ ..+.+.++..
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 304 FEEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred CCcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 87765443 344456667899999877765432 3566666654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=132.55 Aligned_cols=193 Identities=15% Similarity=0.155 Sum_probs=127.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++|+.....+ .+.+| ..+........... ....++|||||+.|+..+.+
T Consensus 123 ~~~~~~~~spdg~~l~~g~~dg-----~v~i~~~~~~~~~~~~~~~~~---------~v~~~~~spdg~~lasg~~d--- 185 (321)
T 3ow8_A 123 VDAWTLAFSPDSQYLATGTHVG-----KVNIFGVESGKKEYSLDTRGK---------FILSIAYSPDGKYLASGAID--- 185 (321)
T ss_dssp TCCCCEEECTTSSEEEEECTTS-----EEEEEETTTCSEEEEEECSSS---------CEEEEEECTTSSEEEEEETT---
T ss_pred ccEEEEEECCCCCEEEEEcCCC-----cEEEEEcCCCceeEEecCCCc---------eEEEEEECCCCCEEEEEcCC---
Confidence 3466789999999998765432 34455 23333222222111 12589999999999886432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..|.+||+.+++..... ......+..++|+|||+.
T Consensus 186 -----------------------------------------g~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~--- 220 (321)
T 3ow8_A 186 -----------------------------------------GIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQL--- 220 (321)
T ss_dssp -----------------------------------------SCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCE---
T ss_pred -----------------------------------------CeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCE---
Confidence 57899999988765441 234456889999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+ .+..|.++|+ ..++ ...+..+...+...+|+|||+.|+..+
T Consensus 221 -l~s~s---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 221 -LVTAS---------------DDGYIKIYDV-----------------QHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp -EEEEC---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEEc---------------CCCeEEEEEC-----------------CCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 76655 2336888887 4443 456666777789999999999988777
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.+. .|.+||+.+++......+ +...+..++|+|||+.| ++...++...|
T Consensus 268 ~D~-----------~v~iwd~~~~~~~~~~~~-------------------h~~~v~~v~~s~~g~~l-~s~~~d~~i~v 316 (321)
T 3ow8_A 268 SDK-----------SVKVWDVGTRTCVHTFFD-------------------HQDQVWGVKYNGNGSKI-VSVGDDQEIHI 316 (321)
T ss_dssp TTS-----------CEEEEETTTTEEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTCCEEE
T ss_pred CCC-----------cEEEEeCCCCEEEEEEcC-------------------CCCcEEEEEECCCCCEE-EEEeCCCeEEE
Confidence 653 488899877553211000 01134567899999866 55566676667
Q ss_pred EE
Q 004141 416 IS 417 (771)
Q Consensus 416 ~~ 417 (771)
|-
T Consensus 317 wd 318 (321)
T 3ow8_A 317 YD 318 (321)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-11 Score=134.25 Aligned_cols=260 Identities=12% Similarity=0.044 Sum_probs=151.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCcceEEEec---CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+..++|||||++|+++...+ +.-.+|.+.. .+...+.+.. ...+ .+++|||||+.|+....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v----------~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRP----------NAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCE----------EEEEECTTSSEEEEEET---
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCc----------eEEEEcCCCCEEEEEeC---
Confidence 478899999999986555433 3334444431 4444444431 2222 58999999999988632
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee----ccCCCCCCccceEEEecC-
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA----VKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~----l~~~~~~~~~~~~~wspD- 250 (771)
...+++|++.+++... .. ......+..+.|+||
T Consensus 170 -----------------------------------------~g~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~ 207 (450)
T 2vdu_B 170 -----------------------------------------FGDVYSIDINSIPEEKFTQEPI-LGHVSMLTDVHLIKDS 207 (450)
T ss_dssp -----------------------------------------TSEEEEEETTSCCCSSCCCCCS-EECSSCEEEEEEEECT
T ss_pred -----------------------------------------CCcEEEEecCCcccccccceee-ecccCceEEEEEcCCC
Confidence 2578999988776542 10 223346788999999
Q ss_pred --CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee-cCCCCccccceeecC
Q 004141 251 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN-LTESISSAFFPRFSP 326 (771)
Q Consensus 251 --g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-lt~~~~~~~~p~~Sp 326 (771)
++. |+..+ .+..|+++|+ .++.. .. +..+...+..+.||
T Consensus 208 ~~~~~----l~s~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~h~~~v~~~~~s- 250 (450)
T 2vdu_B 208 DGHQF----IITSD---------------RDEHIKISHY-----------------PQCFIVDKWLFGHKHFVSSICCG- 250 (450)
T ss_dssp TSCEE----EEEEE---------------TTSCEEEEEE-----------------SCTTCEEEECCCCSSCEEEEEEC-
T ss_pred CCCcE----EEEEc---------------CCCcEEEEEC-----------------CCCceeeeeecCCCCceEEEEEC-
Confidence 775 66554 2347888887 44443 33 44666778999999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc--CCCCCc----ccccCCCCCCccccCC
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFP----GLYSSSILSNPWLSDG 400 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~----g~~~~~~~~~~~s~Dg 400 (771)
||+.|+..+.+ ..|.+||+.+++..........+..+.... ....|. ......+..+.|+||+
T Consensus 251 d~~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~ 319 (450)
T 2vdu_B 251 KDYLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNL 319 (450)
T ss_dssp STTEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSS
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCC
Confidence 99999877754 358999998876422111000000000000 000000 0011234567899999
Q ss_pred CEEEEEeeeCCeeEEEEE-ECCCCcEE---EecCCCCCceeeEEeecCCEEEEEEeCCCCCC------eEEEEEec
Q 004141 401 CTMLLSSIWGSSQVIISV-NVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP------QVKYGYFV 466 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~-d~~tg~~~---~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~------~l~~~~~~ 466 (771)
+.|++....++...||.+ +..+++++ .+... ..+....|++ +.++++..+...|. ++|.++..
T Consensus 320 ~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 320 PFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 988776645666677766 33333333 23333 3344456666 45777777766664 66665543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-12 Score=132.31 Aligned_cols=285 Identities=12% Similarity=0.153 Sum_probs=162.1
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+...+|||||++||..+... .+.+| .++..........+..+. +..++|||||++|+..+.+...+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~------v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRT------VRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSC------EEEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCc------EEEEEECCCCCEEEEEECCCcEE
Confidence 477899999999999876543 34455 222221111111222222 36899999999999988766433
Q ss_pred CCCccCCCCC--CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eeccCCCCCCccceEEEecCC
Q 004141 178 KPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~~~~~~~~~~~~~wspDg 251 (771)
.|...... .......+......+.|.++....+++..+..|.+||+.++.. ..+ ......+..++|+|||
T Consensus 87 --iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 87 --IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp --EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSS
T ss_pred --EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCC
Confidence 23321111 0111223344445677888866666777788999999987642 223 2344567889999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCC
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG 328 (771)
+. |+..+. +..|.++|+ ..+. ...+..+...+.+.+|||||
T Consensus 163 ~~----l~s~s~---------------d~~i~~w~~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 163 EL----LASASY---------------DDTVKLYRE-----------------EEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp SC----EEEEET---------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CE----EEEEeC---------------CCcEEEEEe-----------------cCCCEEEEEEecCCCCceEEEEECCCC
Confidence 98 887662 224666665 3332 24566677788999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcc-ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
++|+..+.+. .|.+|+....+. ..+.. ........+. .+.+.....+..++|++++..| ++
T Consensus 207 ~~l~s~s~D~-----------~v~iW~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~v~~~~~~~~l-~s 269 (345)
T 3fm0_A 207 QRLASCSDDR-----------TVRIWRQYLPGNEQGVACSGSDPSWKCIC-----TLSGFHSRTIYDIAWCQLTGAL-AT 269 (345)
T ss_dssp SEEEEEETTS-----------CEEEEEEECTTCTTCCCCC---CEEEEEE-----EECSSCSSCEEEEEECTTTCCE-EE
T ss_pred CEEEEEeCCC-----------eEEEeccccCCCCccceeeccCCccceeE-----EecCCCCCcEEEEEEecCCCEE-EE
Confidence 9998877663 366666432221 11110 0000000000 0011112235578899999865 45
Q ss_pred eeeCCeeEEEEEECCCCc----E---EEe-cCCCCCceeeEEeecCCEEEEEEe
Q 004141 407 SIWGSSQVIISVNVSSGE----L---LRI-TPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~----~---~~l-~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
...++...+|.++..... . ..+ ......+....|+|++..++++.+
T Consensus 270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 556677778866543211 1 111 122334566778888764555544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-11 Score=129.05 Aligned_cols=270 Identities=12% Similarity=0.060 Sum_probs=136.9
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCe-EEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~-la~~~~~~~~~~ 178 (771)
.....+|||||++|+..... .-.+|.+...++..++..... .+. ...++|||||++ ++|++......
T Consensus 41 ~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~~--~g~------~~~~~~spdg~~l~~~~~~~~~~~- 108 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHPI--GGH------PRANDADTNTRAIFLLAAKQPPYA- 108 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEEC--CSS------GGGGCTTSCCEEEEEEECSSTTCC-
T ss_pred CCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEeec--CCC------CccEEECCCCCEEEEEEecCCcce-
Confidence 35678999999988655432 222333322455444433211 111 146899999997 45554411000
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceee-ccCC--CCCCccceEEEecCCCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQA-VKGI--PKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~-l~~~--~~~~~~~~~~wspDg~~~ 254 (771)
.|.. +.+. ....+.+|+++ .|+... +... .....+..++|||||+.
T Consensus 109 ------------------------~~~~---~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~- 158 (365)
T 1jof_A 109 ------------------------VYAN---PFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY- 158 (365)
T ss_dssp ------------------------EEEE---EESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-
T ss_pred ------------------------eccc---eeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-
Confidence 0000 0000 12457777775 354432 2101 12345678999999996
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC-CCcceec---C--CCCccccceeecCCC
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-DLPVVNL---T--ESISSAFFPRFSPDG 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~l---t--~~~~~~~~p~~SpDG 328 (771)
|++.. . ....|+++++ + +++.+.+ . .+.......+|||||
T Consensus 159 ---l~~~~-~-------------~~~~v~~~~~-----------------~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 159 ---LYSAD-L-------------TANKLWTHRK-----------------LASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp ---EEEEE-T-------------TTTEEEEEEE-----------------CTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ---EEEEc-C-------------CCCEEEEEEE-----------------CCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 65443 1 1237888887 4 4554322 1 113346778999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc-----cCCCCCCc-cccCCCE
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY-----SSSILSNP-WLSDGCT 402 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~-----~~~~~~~~-~s~Dg~~ 402 (771)
++|+...... +...+|.+|..+++.... . ..+..+.. .+.|.- ......++ |||||++
T Consensus 205 ~~l~v~~~~~--------~~v~v~~~~~~~g~~~~~---~-~~~~~~~~----~~~g~~~~~~~~~~~~~i~~~spdG~~ 268 (365)
T 1jof_A 205 NYLYALMEAG--------NRICEYVIDPATHMPVYT---H-HSFPLIPP----GIPDRDPETGKGLYRADVCALTFSGKY 268 (365)
T ss_dssp SEEEEEETTT--------TEEEEEEECTTTCCEEEE---E-EEEESSCT----TCCCBCTTTSSBSEEEEEEEECTTSSE
T ss_pred CEEEEEECCC--------CeEEEEEEeCCCCcEEEc---c-ceEEcCCC----CcCCcccccccccccccEEEECCCCCE
Confidence 9887665432 122344444434432100 0 00111100 010000 00134578 9999998
Q ss_pred EEEEeeeCC-----eeEEEEEECCCCcEEEe----cCCCCCceeeEEee---cCCEEEEEEeCCCCCCeEEEEEe
Q 004141 403 MLLSSIWGS-----SQVIISVNVSSGELLRI----TPAESNFSWSLLTL---DGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 403 l~~~~~~~~-----~~~l~~~d~~tg~~~~l----~~~~~~~~~~~~s~---dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
|+.+....+ ...+|.++. +|+++.+ ...........|+| ||++|+++.... ..+.+.+.
T Consensus 269 l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~---~~v~v~~~ 339 (365)
T 1jof_A 269 MFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE---GWLEIYRW 339 (365)
T ss_dssp EEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSS---CEEEEEEE
T ss_pred EEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCC---CeEEEEEE
Confidence 876554333 455665543 6777652 11222234567899 899887654322 34555554
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-12 Score=132.60 Aligned_cols=268 Identities=12% Similarity=0.097 Sum_probs=163.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++|+..+..+ .+.+|+ .+........... .+..++|||||+.|+..+.+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLRSS---------WVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECSSS---------CEEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecCCc---------cEEEEEECCCCCEEEEEeCCCeE
Confidence 4578899999999998776544 566773 3333332222111 12588999999999988765432
Q ss_pred CCCCccCCCCCCC----CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 177 SKPTFSLGSTKGG----SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
+ .|........ .....+........|.++ +..+++.....|.+||+.+++..... ......+..+.|+|||+
T Consensus 122 ~--iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 S--IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp E--EEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred E--EEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCC
Confidence 2 2222111100 001112222223345554 44666667789999999988765441 33445688999999998
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
. |+..+ .+..|.++|+ .++. ...+..+...+....|+|||+.|
T Consensus 198 ~----l~sg~---------------~d~~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred E----EEEEe---------------CCCcEEEEEC-----------------CCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 6 66554 2347888887 4444 45566677778999999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..+.+. .|.+||+.+++.... ... ... ...+..++|+|||+.|+ +...++
T Consensus 242 ~s~s~d~-----------~v~iwd~~~~~~~~~----------~~~--~~~-----~~~v~~~~~s~~g~~l~-~g~~d~ 292 (340)
T 1got_B 242 ATGSDDA-----------TCRLFDLRADQELMT----------YSH--DNI-----ICGITSVSFSKSGRLLL-AGYDDF 292 (340)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEE----------ECC--TTC-----CSCEEEEEECTTSSEEE-EEETTS
T ss_pred EEEcCCC-----------cEEEEECCCCcEEEE----------Ecc--CCc-----ccceEEEEECCCCCEEE-EECCCC
Confidence 8777553 488899876543110 000 000 01244678999998654 444455
Q ss_pred eeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEE
Q 004141 412 SQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
. +..+|+.+++... +......+....|++++..|+...
T Consensus 293 ~--i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 293 N--CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp E--EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred e--EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 4 4555776766543 444444556678888888776544
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=127.64 Aligned_cols=211 Identities=13% Similarity=0.064 Sum_probs=130.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCc--EEEEECCCCCCC--C-Chhh---hhc-----CCCC-ccc--cchhhH
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLG--F-GEEA---LQS-----LPGK-VGS--QDVNDV 600 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~--~Vv~~d~rG~~~--~-g~~~---~~~-----~~~~-~~~--~~~~D~ 600 (771)
.+.||++||.+.+ ...|...+..|++.|| .|+.+|.++.+. + |.-. .+. ...+ .+. ...+++
T Consensus 6 ~~pvvliHG~~~~--~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGGS--ERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTCC--GGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCCC--hhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 4568999996654 5578889999999996 588888775321 0 1000 000 0000 001 124567
Q ss_pred HHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 601 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 601 ~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
.++++.+.++. +.+++.++||||||.+++.++.++|. +++.+|++++..+....... .... ..+..
T Consensus 84 ~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~--~~~~---~~~~~-- 154 (249)
T 3fle_A 84 KEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNE--NVNE---IIVDK-- 154 (249)
T ss_dssp HHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSS--CTTT---SCBCT--
T ss_pred HHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccC--Ccch---hhhcc--
Confidence 77788887763 45689999999999999999998863 68888888766543221110 0000 00000
Q ss_pred CccCCCCCC--hhhHHHHhhcCcccccCCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--C
Q 004141 676 KDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--D 745 (771)
Q Consensus 676 ~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~ 745 (771)
.+.|. ......+... ...+.+.++|+|.|+|+ .|..||...++.+...++......+.+.+.| +
T Consensus 155 ----~g~p~~~~~~~~~l~~~--~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~~~~y~e~~v~g~~a 228 (249)
T 3fle_A 155 ----QGKPSRMNAAYRQLLSL--YKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGSTKSYQEMKFKGAKA 228 (249)
T ss_dssp ----TCCBSSCCHHHHHTGGG--HHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTCSSEEEEEEEESGGG
T ss_pred ----cCCCcccCHHHHHHHHH--HhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhCCCceEEEEEeCCCC
Confidence 11111 1112222211 23344467899999998 6999999999888777776655666667765 8
Q ss_pred CccCCCCCChHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl 766 (771)
.|..... + .++.+.|..||
T Consensus 229 ~Hs~l~~-n-~~V~~~I~~FL 247 (249)
T 3fle_A 229 QHSQLHE-N-KDVANEIIQFL 247 (249)
T ss_dssp STGGGGG-C-HHHHHHHHHHH
T ss_pred chhcccc-C-HHHHHHHHHHh
Confidence 8976533 3 37888888887
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-11 Score=127.78 Aligned_cols=274 Identities=14% Similarity=0.154 Sum_probs=162.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||.....+ .+.+| ..++..+...... + .+..++|+|||+.|+..+.+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISGHK---L------GISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECCCS---S------CEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhccCC---C------ceEEEEEcCCCCEEEEECCCCEE
Confidence 4578899999999998876543 45566 2344333332211 1 12689999999999988766533
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+............+........|.++....+++.....|.+||+.+++..... ......+..+.|+|||+.
T Consensus 90 ~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 163 (312)
T 4ery_A 90 K--IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL--- 163 (312)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE---
T ss_pred E--EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE---
Confidence 2 3332222111112223333344567777666666777889999999988754431 334456788999999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC-CCCccccceeecCCCCEEEEE
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+ .+..|.++|+ .+++. ..+. .....+....|+|||++|+..
T Consensus 164 -l~~~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 164 -IVSSS---------------YDGLCRIWDT-----------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -EEEEe---------------CCCcEEEEEC-----------------CCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 76655 2347888887 44443 3333 333457778999999998877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCCee
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~Dg~~l~~~~~~~~~~ 413 (771)
+.+ ..|.+||+.+++.... +....... ......|+ ++++ ++++...++.
T Consensus 211 ~~d-----------~~i~iwd~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~~~~~-~l~sg~~dg~- 260 (312)
T 4ery_A 211 TLD-----------NTLKLWDYSKGKCLKT----------YTGHKNEK-------YCIFANFSVTGGK-WIVSGSEDNL- 260 (312)
T ss_dssp ETT-----------TEEEEEETTTTEEEEE----------ECSSCCSS-------SCCCEEEECSSSC-EEEECCTTSC-
T ss_pred cCC-----------CeEEEEECCCCcEEEE----------EEecCCce-------EEEEEEEEeCCCc-EEEEECCCCE-
Confidence 654 3588899877543211 10000000 01122344 4555 5556555555
Q ss_pred EEEEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEEeCCCC
Q 004141 414 VIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
|..+|+.+++..... .....+....++|+++.++....+.+.
T Consensus 261 -i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 261 -VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp -EEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred -EEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 445578788765443 333445556788888877655433333
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.5e-12 Score=127.47 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=132.8
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECC--------CCCCCCChhhhhc--
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQS-- 587 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~--------rG~~~~g~~~~~~-- 587 (771)
...+...+|.|.+ ..++.|+||.+||+... ..+||+|+.+++ +|+.++|. +.+.
T Consensus 89 s~~~~~~i~lP~~--~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 89 SISFTVTITYPSS--GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEEECCSS--SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eeEEEEEEECCCC--CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3568889999974 35788999999985321 257999999987 55555654 3211
Q ss_pred CCCCccccc--hhhHHHHHHHHHHcC--CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh------
Q 004141 588 LPGKVGSQD--VNDVLTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------ 657 (771)
Q Consensus 588 ~~~~~~~~~--~~D~~~~i~~l~~~~--~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~------ 657 (771)
....++... .-++.++++||..++ .+|++||+++|||+||..|+++++.. ++|+++|..++..+-....
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G~~~~R~~~~~ 231 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGGSACWRISDYL 231 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTTTSCHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCchhhhhhhhhh
Confidence 123344333 358999999999987 89999999999999999999999985 5899999887654321110
Q ss_pred ---cCCC--------CCcchhhhhccCCCCccCCCCCChhhHHHHhhcCccc---ccCCC-CCcEEEEeeCCCCccCcHH
Q 004141 658 ---GTTD--------IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS---HISKV-KTPTIFLLGAQDLRVPVSN 722 (771)
Q Consensus 658 ---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~---~~~~i-~~P~lii~G~~D~~vp~~~ 722 (771)
+..- ...|+. .. ...|... ...-|++ .+.-+ ..|+|++.| +|..++++.
T Consensus 232 ~~~Ge~v~~~~~~~~e~~Wf~-~~-----~~~y~~~---------~~~lP~D~h~L~ALiAPRPllv~~g-~D~w~~~~g 295 (375)
T 3pic_A 232 KSQGANIQTASEIIGEDPWFS-TT-----FNSYVNQ---------VPVLPFDHHSLAALIAPRGLFVIDN-NIDWLGPQS 295 (375)
T ss_dssp HHTTCCCCCHHHHTTTCSCSC-GG-----GGGTTTC---------GGGSSCCHHHHHHTSTTSEEEEECC-CCGGGCHHH
T ss_pred cccCccccccccccCcccccc-cc-----hhhhccc---------ccccCcCHHHHHHHhCCceEEEecC-CCcccCcHH
Confidence 1000 001110 00 0000000 0001111 12222 257999999 999998876
Q ss_pred HHHHHHHH----HhCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 723 GLQYARAL----REKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 723 ~~~~~~~l----~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
....+..+ +..|. ++.+....+.+|+.. +. +..+++.+||+++|+
T Consensus 296 ~~~~~~~a~~VY~~lG~~d~~~~~~~ggH~Hc~f-p~---~~~~~~~~F~~k~L~ 346 (375)
T 3pic_A 296 CFGCMTAAHMAWQALGVSDHMGYSQIGAHAHCAF-PS---NQQSQLTAFVQKFLL 346 (375)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEECCSCCSTTCC-CG---GGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCCccceEEEeeCCCccccC-CH---HHHHHHHHHHHHHhC
Confidence 55444444 33454 466654333345322 22 234789999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=7e-12 Score=131.80 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=141.0
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecC
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 142 (771)
+......+.|.+|++..... ...+. ..+......+...+|||||++||..+... .+.+|+ .++..+....
T Consensus 96 l~~~s~dg~v~lWd~~~~~~-~~~~~-~~~~~H~~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~~- 167 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENET-LIVSK-FCKYEHDDIVSTVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSSYRA- 167 (344)
T ss_dssp EEEEETTSEEEEEEECTTSS-CEEEE-EEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC-
T ss_pred EEEEECCCEEEEEeccCCCc-eeEee-ccccCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcC-
Confidence 33444556788888754422 11111 00111224588899999999998776543 456663 3333222221
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE
Q 004141 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 222 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 222 (771)
..+. +..+.|+||++.++..+. .+..|.+
T Consensus 168 --h~~~------V~~~~~~~~~~~~l~s~s-------------------------------------------~D~~v~i 196 (344)
T 4gqb_B 168 --HAAQ------VTCVAASPHKDSVFLSCS-------------------------------------------EDNRILL 196 (344)
T ss_dssp --CSSC------EEEEEECSSCTTEEEEEE-------------------------------------------TTSCEEE
T ss_pred --cCCc------eEEEEecCCCCCceeeec-------------------------------------------ccccccc
Confidence 1112 268999999986655432 2257899
Q ss_pred EEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhc
Q 004141 223 ININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKE 301 (771)
Q Consensus 223 ~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 301 (771)
||+.+++.... ........+..+.|+|++.. ++.++. .+..|.++|+
T Consensus 197 wd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~----~l~sg~--------------~dg~v~~wd~-------------- 244 (344)
T 4gqb_B 197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE----VFVFGD--------------ENGTVSLVDT-------------- 244 (344)
T ss_dssp EETTSSSCEEECC----CCCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEES--------------
T ss_pred ccccccceeeeeecceeeccceeeeecCCCCc----ceEEec--------------cCCcEEEEEC--------------
Confidence 99988876543 11122335678899998877 766552 2347888888
Q ss_pred CCCCCCc-ceecCCCCccccceeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC
Q 004141 302 SSSEDLP-VVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 302 ~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
.+++ ...+..+...+...+|||||.. |+..+.+ ..|.+||+.+++...+..
T Consensus 245 ---~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-----------~~i~vwd~~~~~~~~~~~------------- 297 (344)
T 4gqb_B 245 ---KSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSED-----------CSLAVLDSSLSELFRSQA------------- 297 (344)
T ss_dssp ---CC--CCEEEECCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTCCEEEEECC-------------
T ss_pred ---CCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCC-----------CeEEEEECCCCcEEEEcC-------------
Confidence 4444 4567777778899999999965 5555544 248889987765321100
Q ss_pred CCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 380 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 380 ~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
+...+..++|+||++.|+++...++...+|.++
T Consensus 298 -------H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 298 -------HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp -------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred -------CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 112356788999999888888878877777554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.6e-11 Score=128.42 Aligned_cols=245 Identities=13% Similarity=0.153 Sum_probs=150.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++|+.....+ .+.+| ..++......... + .+..++|+|||+.|+..+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~s~~~---- 94 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDGHT---G------TIWSIDVDCFTKYCVTGSA---- 94 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECCCS---S------CEEEEEECTTSSEEEEEET----
T ss_pred ceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhhcC---C------cEEEEEEcCCCCEEEEEeC----
Confidence 4588899999999998765433 34455 3333333332111 1 1268999999999987643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
...|.+||+.+++.... ......+..+.|+|||+.
T Consensus 95 ----------------------------------------dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~--- 129 (369)
T 3zwl_B 95 ----------------------------------------DYSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNY--- 129 (369)
T ss_dssp ----------------------------------------TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSE---
T ss_pred ----------------------------------------CCeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCE---
Confidence 25799999998887666 345557889999999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCc--cccceeecCCCCEEEEE
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~--~~~~p~~SpDG~~l~f~ 334 (771)
|+..+.... .....|.++|+....... .+ . .........+..... .+....|+|||+.|+..
T Consensus 130 -l~~~~~~~~----------~~~g~i~~~d~~~~~~~~-~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 130 -FLAILDNVM----------KNPGSINIYEIERDSATH-EL---T-KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp -EEEEECCBT----------TBCCEEEEEEEEECTTTC-CE---E-EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred -EEEecCCcc----------CCCCEEEEEEecCCccce-ee---c-ccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 777652200 112366666662100000 00 0 000012222223333 67889999999988876
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
+.+ ..|++||+.++... ...+.. ....+..++|+||++.|+.. ..++ .
T Consensus 194 ~~d-----------g~i~i~d~~~~~~~---------~~~~~~---------~~~~v~~~~~~~~~~~l~~~-~~d~--~ 241 (369)
T 3zwl_B 194 HKD-----------GKISKYDVSNNYEY---------VDSIDL---------HEKSISDMQFSPDLTYFITS-SRDT--N 241 (369)
T ss_dssp ETT-----------SEEEEEETTTTTEE---------EEEEEC---------CSSCEEEEEECTTSSEEEEE-ETTS--E
T ss_pred cCC-----------CEEEEEECCCCcEe---------EEEEec---------CCCceeEEEECCCCCEEEEe-cCCc--e
Confidence 654 35889998763211 111100 01134567899999976544 3344 4
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCC
Q 004141 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~ 454 (771)
|..+|+.+++...............++++++.+++.....
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 6666888888776655555566778999999888776543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=138.91 Aligned_cols=286 Identities=12% Similarity=0.041 Sum_probs=159.2
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.||||+.|+-..... ...-...+++++............ .. ......+...+|||||+.++ .+.. + .+.
T Consensus 50 fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~~~~~~-~~-~~~~~~V~~~~~s~d~~~l~-~s~d--g---~v~ 118 (357)
T 4g56_B 50 YRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPNESLCT-AG-VQTEAGVTDVAWVSEKGILV-ASDS--G---AVE 118 (357)
T ss_dssp ECSSSCEEEEEECSS---SSSCCEEEEEESSCC---CGGGCS-EE-EECSSCEEEEEEETTTEEEE-EETT--S---CEE
T ss_pred ECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcceeEec-cc-CCCCCCEEEEEEcCCCCEEE-EECC--C---EEE
Confidence 378999888654221 111245677766533321111110 00 01123578899999997654 3332 2 244
Q ss_pred Eec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 129 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+|+ .++...........| .+.+.+++|||||++|+..+.+...+ .|+............+......+.|.+
T Consensus 119 lWd~~~~~~~~~~~~~~~~h-----~~~V~~v~~spdg~~l~sgs~dg~v~--iwd~~~~~~~~~~~~h~~~v~~v~~s~ 191 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEH-----DDIVKTLSVFSDGTQAVSGGKDFSVK--VWDLSQKAVLKSYNAHSSEVNCVAACP 191 (357)
T ss_dssp EC--------CCCCEEECCC-----SSCEEEEEECSSSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EeeccccceeEEEeeccCCC-----CCCEEEEEECCCCCEEEEEeCCCeEE--EEECCCCcEEEEEcCCCCCEEEEEEcc
Confidence 552 222111111100011 11236899999999999887766433 333222221112222333334556776
Q ss_pred CcCc-ccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 207 DWGE-TYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 207 d~g~-~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
+... .+++..+..|.+||+.+++.... ........+..++|+|++.. ++.++. .+..|.+
T Consensus 192 ~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~----~la~g~--------------~d~~i~~ 253 (357)
T 4g56_B 192 GKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD----TFACGD--------------ETGNVSL 253 (357)
T ss_dssp TCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT----EEEEEE--------------SSSCEEE
T ss_pred CCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc----eEEEee--------------cccceeE
Confidence 6433 34455568899999988875443 11233445778999999887 766652 2336888
Q ss_pred EecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
+|+ .+++ ...+..+...+...+|||||+. |+..+.+ ..|++||+.+++..
T Consensus 254 wd~-----------------~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-----------~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 254 VNI-----------------KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISED-----------CTVAVLDADFSEVF 305 (357)
T ss_dssp EES-----------------SCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTSCEEE
T ss_pred EEC-----------------CCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-----------CEEEEEECCCCcEe
Confidence 887 4443 4556666777899999999965 5544443 34889998876542
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEE
Q 004141 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.... +...+..++|+| |++ ++++...++...+|.++
T Consensus 306 ~~~~--------------------H~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 306 RDLS--------------------HRDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EECC--------------------CSSCEEEEEECSSSTT-EEEEEETTSCEEEEECC
T ss_pred EECC--------------------CCCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECC
Confidence 2110 111345778998 676 55677777777777654
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=131.40 Aligned_cols=214 Identities=12% Similarity=0.058 Sum_probs=122.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~ 613 (771)
+..|.||++||.........|...+..| ..||.|+++|+|| +|.+.. ....++++.+.+ +.+.+. .
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G---~G~~~~-------~~~~~~~~~~~~~~~l~~~--~ 145 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPG---FHGGQA-------LPATLTVLVRSLADVVQAE--V 145 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTT---SSTTCC-------EESSHHHHHHHHHHHHHHH--H
T ss_pred CCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh--c
Confidence 4568899999942222245677888888 7899999999999 543211 111233333322 222222 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCccCCCCCC-hh-
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPS-VE- 686 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~- 686 (771)
+.+++.|+||||||.++..++.++ |+.++++|+.++....... .....+. +....... ...+..... ..
T Consensus 146 ~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 221 (319)
T 3lcr_A 146 ADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDG---GRPEELFRSALNERFVE-YLRLTGGGNLSQR 221 (319)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSC---CHHHHHHHHHHHHHHHH-HHHHHCCCCHHHH
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccc---hhhHHHHHHHHHHHHhh-hhcccCCCchhHH
Confidence 236899999999999999999887 8889999988765321100 0000000 00000000 000000000 00
Q ss_pred --hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHH
Q 004141 687 --DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL 764 (771)
Q Consensus 687 --~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~ 764 (771)
....+...........+++|+|+++|++ ..+++.....+.+.+.. .++++.+++..|.+..++....+...|.+
T Consensus 222 l~~~~~~~~~~~~~~~~~i~~PvLli~g~~-~~~~~~~~~~~~~~~~~---~~~~~~~~g~H~~~~~~~~~~~va~~i~~ 297 (319)
T 3lcr_A 222 ITAQVWCLELLRGWRPEGLTAPTLYVRPAQ-PLVEQEKPEWRGDVLAA---MGQVVEAPGDHFTIIEGEHVASTAHIVGD 297 (319)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSCEEEEEESS-CSSSCCCTHHHHHHHHT---CSEEEEESSCTTGGGSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCEEEEEeCC-CCCCcccchhhhhcCCC---CceEEEeCCCcHHhhCcccHHHHHHHHHH
Confidence 0111111111112357899999999998 56666667777766654 36788888744444444577788899999
Q ss_pred HHHHh
Q 004141 765 WFKKY 769 (771)
Q Consensus 765 fl~~~ 769 (771)
||.+.
T Consensus 298 fL~~~ 302 (319)
T 3lcr_A 298 WLREA 302 (319)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-12 Score=136.59 Aligned_cols=206 Identities=12% Similarity=0.025 Sum_probs=134.0
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
...|.++....+.+.....|++||+++++..... ......+..++|+|||+. |++++. ...
T Consensus 174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----l~~~~~--------------~~~ 234 (433)
T 3bws_A 174 TISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSKILLYDPIRDL----VYCSNW--------------ISE 234 (433)
T ss_dssp EEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEEEEEEETTTTE----EEEEET--------------TTT
T ss_pred EEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCeeEEEEcCCCCE----EEEEec--------------CCC
Confidence 3456555333344445689999999988765441 233446778999999997 666542 233
Q ss_pred eeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 281 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.|+++|+ .+++..........+....|+|||+.|+......... ......|+++|+.+++
T Consensus 235 ~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 235 DISVIDR-----------------KTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQ---ESGGGRLGIYSMDKEK 294 (433)
T ss_dssp EEEEEET-----------------TTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTT---CSCCEEEEEEETTTTE
T ss_pred cEEEEEC-----------------CCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCcc---ccCCCeEEEEECCCCc
Confidence 7999998 6666555444555688899999999998877543100 0123579999988765
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL 440 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~ 440 (771)
........ ..+..++|+|||+.|+++...++ .++.+|+.+++...............+
T Consensus 295 ~~~~~~~~--------------------~~~~~~~~~~~g~~l~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~~~~ 352 (433)
T 3bws_A 295 LIDTIGPP--------------------GNKRHIVSGNTENKIYVSDMCCS--KIEVYDLKEKKVQKSIPVFDKPNTIAL 352 (433)
T ss_dssp EEEEEEEE--------------------ECEEEEEECSSTTEEEEEETTTT--EEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEeeccCC--------------------CCcceEEECCCCCEEEEEecCCC--EEEEEECCCCcEEEEecCCCCCCeEEE
Confidence 32211000 02345689999998888765444 566678888877655544444566789
Q ss_pred eecCCEEEEEEeCCCCC-----------CeEEEEEecc
Q 004141 441 TLDGDNIIAVSSSPVDV-----------PQVKYGYFVD 467 (771)
Q Consensus 441 s~dg~~l~~~~~~~~~p-----------~~l~~~~~~~ 467 (771)
+++++.+++........ ..+++.++.+
T Consensus 353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred cCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 99999888877654433 3677766543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-10 Score=124.90 Aligned_cols=275 Identities=11% Similarity=0.111 Sum_probs=164.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++|+..+... .+.+|+ .++....+..... +...++|||||+.|+..+.+...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~h~~---------~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKLHCP---------WVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEECCCT---------TCCCCEECTTSSEEEECCSSSCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEecCCC---------CEEEEEECCCCCEEEEeeCCCcE
Confidence 4588899999999998776544 567773 3333333322111 12688999999999987766543
Q ss_pred CCCCccCCCC-------CCCCCCccCCCCCCcccccCCcC-cccCCccCceEEEEEccCCceeeccC----CCCCCccce
Q 004141 177 SKPTFSLGST-------KGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKG----IPKSLSVGQ 244 (771)
Q Consensus 177 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~~~~~~l~~----~~~~~~~~~ 244 (771)
+ .|+.... +.......+........|.++.+ ..+++..+..|.+||+.+++...... ......+..
T Consensus 133 ~--iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 S--IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp E--EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred E--EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 3 2322111 11112233444445566776644 35566677899999999987655411 112335667
Q ss_pred EEEec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-CcceecCCCCccccce
Q 004141 245 VVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFP 322 (771)
Q Consensus 245 ~~wsp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~p 322 (771)
+.|+| +++. |+..+ .+..|.++|+. .+ .....+..+...+.+.
T Consensus 211 ~~~~~~~~~~----l~sgs---------------~D~~v~~wd~~----------------~~~~~~~~~~~h~~~v~~v 255 (380)
T 3iz6_a 211 LSINSLNANM----FISGS---------------CDTTVRLWDLR----------------ITSRAVRTYHGHEGDINSV 255 (380)
T ss_dssp EEECSSSCCE----EEEEE---------------TTSCEEEEETT----------------TTCCCCEEECCCSSCCCEE
T ss_pred EEeecCCCCE----EEEEE---------------CCCeEEEEECC----------------CCCcceEEECCcCCCeEEE
Confidence 88877 6654 44443 23368888872 12 2345566677789999
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 323 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 323 ~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
.|+|||+.|+..+.+. .|.+||+.++......... ........ ..+..++|+|||+.
T Consensus 256 ~~~p~~~~l~s~s~D~-----------~i~lwd~~~~~~~~~~~~~-------~~~~~~~~-----~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 256 KFFPDGQRFGTGSDDG-----------TCRLFDMRTGHQLQVYNRE-------PDRNDNEL-----PIVTSVAFSISGRL 312 (380)
T ss_dssp EECTTSSEEEEECSSS-----------CEEEEETTTTEEEEEECCC-------CSSSCCSS-----CSCSEEEECSSSSE
T ss_pred EEecCCCeEEEEcCCC-----------eEEEEECCCCcEEEEeccc-------cccccccc-----CceEEEEECCCCCE
Confidence 9999999988777653 4889998876542211000 00000001 12456789999996
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEE-ec----CCCCCceeeEEeecCCEEEEE
Q 004141 403 MLLSSIWGSSQVIISVNVSSGELLR-IT----PAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~-l~----~~~~~~~~~~~s~dg~~l~~~ 450 (771)
|+ +...++. ++.+|..+++... +. .....+....|+++|+.|+..
T Consensus 313 l~-~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 362 (380)
T 3iz6_a 313 LF-AGYSNGD--CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG 362 (380)
T ss_dssp EE-EECTTSC--EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred EE-EEECCCC--EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence 65 4444444 5555877776543 31 223345667899999976543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=130.02 Aligned_cols=197 Identities=15% Similarity=0.124 Sum_probs=126.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
||||+.++..... ..+.+++|++... .....+. .. ..+...+|||||++|+..++.. +..+
T Consensus 142 SpDg~~la~as~~-------~d~~i~iwd~~~~-~~~~~~~-~~-----~~V~~v~fspdg~~l~s~s~~~-----~~~~ 202 (365)
T 4h5i_A 142 SREGTVAAIASSK-------VPAIMRIIDPSDL-TEKFEIE-TR-----GEVKDLHFSTDGKVVAYITGSS-----LEVI 202 (365)
T ss_dssp CTTSSCEEEEESC-------SSCEEEEEETTTT-EEEEEEE-CS-----SCCCEEEECTTSSEEEEECSSC-----EEEE
T ss_pred cCCCCEEEEEECC-------CCCEEEEeECCCC-cEEEEeC-CC-----CceEEEEEccCCceEEecccee-----EEEE
Confidence 6788887765432 3356777776332 1112221 11 4578899999999999876433 5666
Q ss_pred e-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 130 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 130 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
| ..+..... ....... ..+..+.|||||+.|+..+.+..
T Consensus 203 ~~~~~~~~~~-~~~~~~~------~~v~~v~fspdg~~l~~~s~d~~--------------------------------- 242 (365)
T 4h5i_A 203 STVTGSCIAR-KTDFDKN------WSLSKINFIADDTVLIAASLKKG--------------------------------- 242 (365)
T ss_dssp ETTTCCEEEE-ECCCCTT------EEEEEEEEEETTEEEEEEEESSS---------------------------------
T ss_pred EeccCcceee-eecCCCC------CCEEEEEEcCCCCEEEEEecCCc---------------------------------
Confidence 6 33332221 1111111 12368999999999988765432
Q ss_pred CcccCCccCceEEEEEccCCceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 209 GETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
....++.|++..+....+. -......+..++|||||+. |+..+ .+..|.++
T Consensus 243 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~----lasgs---------------~D~~V~iw 296 (365)
T 4h5i_A 243 -------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL----AVLAS---------------NDNSIALV 296 (365)
T ss_dssp -------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE----EEEEE---------------TTSCEEEE
T ss_pred -------ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc----eEEEc---------------CCCEEEEE
Confidence 2246788888766543220 0233446788999999997 77765 23478889
Q ss_pred ecccccchhhhhhhhcCCCCCCcc-ee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLPV-VN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~-~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|+ .+++. .. +..+...+.+.+|||||++||-.+.+. .|.+||+..+
T Consensus 297 d~-----------------~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-----------tvrvw~ip~~ 344 (365)
T 4h5i_A 297 KL-----------------KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-----------TIHIIKLPLN 344 (365)
T ss_dssp ET-----------------TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-----------EEEEEECCTT
T ss_pred EC-----------------CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-----------eEEEEEcCCC
Confidence 98 66654 33 456777899999999999999888764 4778887543
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.39 E-value=9.7e-12 Score=134.72 Aligned_cols=278 Identities=8% Similarity=-0.006 Sum_probs=159.9
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc
Q 004141 55 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 134 (771)
Q Consensus 55 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~ 134 (771)
.++|+.+..-+......+.++++++.... ..+..... .......|+|||++||.....+ .+.+|+-..
T Consensus 61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 128 (420)
T 3vl1_A 61 GNTFEKVGSHLYKARLDGHDFLFNTIIRD--GSKMLKRA-----DYTAVDTAKLQMRRFILGTTEG-----DIKVLDSNF 128 (420)
T ss_dssp TCEEEEEETTEEEEEETTEEEEEECCSEE--TTTTSCSC-----CEEEEEEECSSSCEEEEEETTS-----CEEEECTTS
T ss_pred ceeeeecCCeEEEEEcCCcEEEEEecccc--eeeEEecC-----CceEEEEEecCCCEEEEEECCC-----CEEEEeCCC
Confidence 46666666666666666788888764332 11111111 2345567999999998876543 455663222
Q ss_pred ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCC
Q 004141 135 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAG 214 (771)
Q Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~ 214 (771)
...+... ....+ .+.+++|+|||+.|+..+.
T Consensus 129 ~~~~~~~-~~h~~------~v~~~~~~~~~~~l~s~s~------------------------------------------ 159 (420)
T 3vl1_A 129 NLQREID-QAHVS------EITKLKFFPSGEALISSSQ------------------------------------------ 159 (420)
T ss_dssp CEEEEET-TSSSS------CEEEEEECTTSSEEEEEET------------------------------------------
T ss_pred cceeeec-ccccC------ccEEEEECCCCCEEEEEeC------------------------------------------
Confidence 1222221 11111 2368999999998887643
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
...|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 160 --d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~------- 210 (420)
T 3vl1_A 160 --DMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRN----VLSAS---------------LDGTIRLWEC------- 210 (420)
T ss_dssp --TSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEET-------
T ss_pred --CCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCE----EEEEc---------------CCCcEEEeEC-------
Confidence 257999999877644331 334556889999999997 77655 2235667776
Q ss_pred hhhhhhcCCCCCCcc-eecCC------------------------CCccccceeecCCCCEEEEEecCCCCCCCCccccc
Q 004141 295 SELELKESSSEDLPV-VNLTE------------------------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 349 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~-~~lt~------------------------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~ 349 (771)
.+++. ..+.. ....+..+.|||||+.|+..+.+.
T Consensus 211 ----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----------- 269 (420)
T 3vl1_A 211 ----------GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG----------- 269 (420)
T ss_dssp ----------TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----------
T ss_pred ----------CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----------
Confidence 33322 11211 124466788999999987766553
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEE
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR 427 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~ 427 (771)
.|.+||+.+++.... +.. .+...+..++|+|+++.++++...++. |..+|+.+++ +..
T Consensus 270 ~i~i~d~~~~~~~~~---------~~~---------~~~~~v~~~~~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~ 329 (420)
T 3vl1_A 270 VITVHNVFSKEQTIQ---------LPS---------KFTCSCNSLTVDGNNANYIYAGYENGM--LAQWDLRSPECPVGE 329 (420)
T ss_dssp CEEEEETTTCCEEEE---------ECC---------TTSSCEEEEEECSSCTTEEEEEETTSE--EEEEETTCTTSCSEE
T ss_pred eEEEEECCCCceeEE---------ccc---------ccCCCceeEEEeCCCCCEEEEEeCCCe--EEEEEcCCCcCchhh
Confidence 488999877653111 000 011134577899999855566665555 5555777764 445
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 428 l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+.......-...++++++.|+ +.+ . -..+.+.++..
T Consensus 330 ~~~~~~~~v~~~~~~~~~~l~-s~~-~--d~~v~iw~~~~ 365 (420)
T 3vl1_A 330 FLINEGTPINNVYFAAGALFV-SSG-F--DTSIKLDIISD 365 (420)
T ss_dssp EEESTTSCEEEEEEETTEEEE-EET-T--TEEEEEEEECC
T ss_pred hhccCCCCceEEEeCCCCEEE-Eec-C--CccEEEEeccC
Confidence 544233223344666665443 332 2 23455555543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-10 Score=122.13 Aligned_cols=274 Identities=9% Similarity=0.024 Sum_probs=157.8
Q ss_pred eeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccc
Q 004141 71 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGS 148 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 148 (771)
.+.+.+|++.... ....+.. ......+...+||| +++.|+..+... .+.+| ..+...+.........
T Consensus 95 dg~i~iwd~~~~~-~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~-- 163 (383)
T 3ei3_B 95 GGDIILWDYDVQN-KTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSIRG-----ATTLRDFSGSVIQVFAKTDSWD-- 163 (383)
T ss_dssp TSCEEEEETTSTT-CEEEECC---CSTTCBEEEEEEETTEEEEEEEEETTT-----EEEEEETTSCEEEEEECCCCSS--
T ss_pred CCeEEEEeCCCcc-cceeeec---CCcCCceeEEEeCCCCCCEEEEEeCCC-----EEEEEECCCCceEEEeccCCCC--
Confidence 3567777764332 1112211 11225688999999 677777665433 45566 3333333332222111
Q ss_pred ccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 149 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 149 ~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
..+..++|+|||+.|+..+. ...|++||+.+.
T Consensus 164 ----~~v~~~~~~~~~~~l~~~~~--------------------------------------------d~~i~i~d~~~~ 195 (383)
T 3ei3_B 164 ----YWYCCVDVSVSRQMLATGDS--------------------------------------------TGRLLLLGLDGH 195 (383)
T ss_dssp ----CCEEEEEEETTTTEEEEEET--------------------------------------------TSEEEEEETTSC
T ss_pred ----CCeEEEEECCCCCEEEEECC--------------------------------------------CCCEEEEECCCC
Confidence 12368999999998887643 368999999766
Q ss_pred ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc
Q 004141 229 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 308 (771)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 308 (771)
....+ ......+..++|+|+++. +++++. .+..|.++|+... ...+.
T Consensus 196 ~~~~~--~~h~~~v~~~~~~~~~~~----~l~s~~--------------~d~~i~iwd~~~~-------------~~~~~ 242 (383)
T 3ei3_B 196 EIFKE--KLHKAKVTHAEFNPRCDW----LMATSS--------------VDATVKLWDLRNI-------------KDKNS 242 (383)
T ss_dssp EEEEE--ECSSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEEGGGC-------------CSTTC
T ss_pred EEEEe--ccCCCcEEEEEECCCCCC----EEEEEe--------------CCCEEEEEeCCCC-------------Ccccc
Confidence 66666 344557889999999996 655552 3347888887210 00133
Q ss_pred ceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 309 VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 309 ~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
......+...+.++.|+| ||+.|+..+.+ ..|.+||+.+++.......... ..+. +
T Consensus 243 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~----------~~~~--~ 299 (383)
T 3ei3_B 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQR-----------NEIRVYSSYDWSKPDQIIIHPH----------RQFQ--H 299 (383)
T ss_dssp EEEEEECSSCEEEEEECTTTSCEEEEEESS-----------SEEEEEETTBTTSCSEEEECCB----------CCCT--T
T ss_pred eEEEecCCCceEEEEEcCCCCCEEEEEcCC-----------CcEEEEECCCCccccccccccc----------cccc--c
Confidence 333335667789999999 99999877654 3589999887665322111100 0000 0
Q ss_pred cCCCCCCccccCCCEEEEEeee------CCeeEEEEEECCCCcEEEecCC---CCCceeeEEeecCCEEEEEEeCCCCCC
Q 004141 388 SSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVP 458 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~~l~~~~~~------~~~~~l~~~d~~tg~~~~l~~~---~~~~~~~~~s~dg~~l~~~~~~~~~p~ 458 (771)
. ..-...|+|++..+.+.... .....|..+|+.+++....... ........|+++++.|+.. + + .
T Consensus 300 ~-~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~-s--d--~ 373 (383)
T 3ei3_B 300 L-TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASG-M--G--F 373 (383)
T ss_dssp S-CCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEE-E--T--T
T ss_pred c-cceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEe-c--C--C
Confidence 0 11124566666654433321 1234466678888876544332 2334445899999977655 3 2 4
Q ss_pred eEEEEEe
Q 004141 459 QVKYGYF 465 (771)
Q Consensus 459 ~l~~~~~ 465 (771)
.|.+.++
T Consensus 374 ~i~iw~~ 380 (383)
T 3ei3_B 374 NILIWNR 380 (383)
T ss_dssp EEEEEEC
T ss_pred cEEEEec
Confidence 5666554
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-11 Score=128.94 Aligned_cols=269 Identities=13% Similarity=0.085 Sum_probs=164.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||..+... ...+|+ .+........... +.....|||||+.|+..+.+...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~~---------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPCT---------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSSS---------CCCEEEECTTSSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCCC---------CEEEEEECCCCCEEEEeeCCCCE
Confidence 4588899999999998776544 667773 3333333332211 23689999999999887655432
Q ss_pred CCCCccCCCCCC------CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004141 177 SKPTFSLGSTKG------GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 177 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
. .|....... ......+........|.++....+++.....|.+||+.+++..... ......+..+.|+|+
T Consensus 131 ~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 S--VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPS 207 (354)
T ss_dssp E--EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCC
T ss_pred E--EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeC
Confidence 1 121111100 0011123333345567777666777778899999999988765431 223345667788774
Q ss_pred --CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC
Q 004141 251 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 251 --g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD 327 (771)
|+. |+..+ .+..|.++|+ .+++ ...+..+...+...+|+||
T Consensus 208 ~~g~~----l~sgs---------------~Dg~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 208 ETGNT----FVSGG---------------CDKKAMVWDM-----------------RSGQCVQAFETHESDVNSVRYYPS 251 (354)
T ss_dssp SSCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEeCC
Confidence 554 55444 3347888898 5554 3455666777899999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
|+.|+..+.+. .|.+||+.++..... .... ... .....++|+|||+.| ++.
T Consensus 252 ~~~l~s~s~D~-----------~v~lwd~~~~~~~~~----------~~~~-~~~------~~~~~~~~s~~g~~l-~~g 302 (354)
T 2pbi_B 252 GDAFASGSDDA-----------TCRLYDLRADREVAI----------YSKE-SII------FGASSVDFSLSGRLL-FAG 302 (354)
T ss_dssp SSEEEEEETTS-----------CEEEEETTTTEEEEE----------ECCT-TCC------SCEEEEEECTTSSEE-EEE
T ss_pred CCEEEEEeCCC-----------eEEEEECCCCcEEEE----------EcCC-Ccc------cceeEEEEeCCCCEE-EEE
Confidence 99988777553 488888876532111 0000 000 023457899999855 444
Q ss_pred eeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEE
Q 004141 408 IWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
..++...+| |+.+++.. .+......+....|+|||+.|+...
T Consensus 303 ~~d~~i~vw--d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 303 YNDYTINVW--DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTSCEEEE--ETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCcEEEE--ECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 555555555 77677644 4444444566678999998776544
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-12 Score=128.60 Aligned_cols=215 Identities=16% Similarity=0.106 Sum_probs=131.4
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECC--------CCCCCCChhhhhcC--
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSL-- 588 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~--------rG~~~~g~~~~~~~-- 588 (771)
..+.+.+|.|. +.++.|+||.+||+.. ...+||+++.+++ +|+.++|. +....
T Consensus 123 ~sf~~~i~lP~---g~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 123 ISFSASIRKPS---GAGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEEECCS---SSCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEEECCC---CCCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 45789999997 4578999999997421 0357999999997 34445655 33211
Q ss_pred CCCccccc--hhhHHHHHHHHHH----cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----
Q 004141 589 PGKVGSQD--VNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----- 657 (771)
Q Consensus 589 ~~~~~~~~--~~D~~~~i~~l~~----~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~----- 657 (771)
...++... ..++.+++++|.. ++.+|++||+++|||+||..++++++.. ++|+++|..++..+-....
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G~~~~R~~~~ 264 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGGAACWRISDQ 264 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTTTSCHHHHHH
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCchhhhhhchh
Confidence 12343322 3588999999998 7889999999999999999999999985 5899999888754322110
Q ss_pred ----cCCC--------CCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccc---cCCC-CCcEEEEeeCCCCccCcH
Q 004141 658 ----GTTD--------IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---ISKV-KTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 658 ----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~~~i-~~P~lii~G~~D~~vp~~ 721 (771)
+..- ...|+. .. ...|... ...-|+++ +.-+ ..|+|++.| +|..+++.
T Consensus 265 ~~~~Ge~v~~~~~~~ge~~Wf~-~~-----f~~y~~~---------~~~LPfD~heL~ALiAPRPlLv~~g-~D~w~~p~ 328 (433)
T 4g4g_A 265 QKAAGANIQTAAQIITENPWFS-RN-----FDPHVNS---------ITSVPQDHHLLAALIVPRGLAVFEN-NIDWLGPV 328 (433)
T ss_dssp HHHTTCCCCCHHHHTTTCCCSC-TT-----TGGGTTC---------GGGSSCCGGGHHHHHTTSEEEEEEC-CCTTTCHH
T ss_pred hcccCcchhhhhcccCCccccc-hh-----hHhhccc---------cccCCcCHHHHHHhhCCceEEEecC-CCCcCCcH
Confidence 1000 001110 00 0000000 00011111 1111 258999999 99888877
Q ss_pred HHHHHHHHHH----hCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 722 NGLQYARALR----EKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 722 ~~~~~~~~l~----~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.....+..++ ..|. ++.+...++.+|+.. +. .....+.+||+++|+
T Consensus 329 g~~~a~~aa~~VY~~lGa~d~l~~~~~ggH~Hc~f-p~---~~r~~~~~F~~k~Lk 380 (433)
T 4g4g_A 329 STTGCMAAGRLIYKAYGVPNNMGFSLVGGHNHCQF-PS---SQNQDLNSYINYFLL 380 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGEEEEECCSSCTTCC-CG---GGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCccceEEEeeCCCCcccC-CH---HHHHHHHHHHHHHhC
Confidence 5554433332 2243 467766555556432 22 235788899999985
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=130.87 Aligned_cols=277 Identities=15% Similarity=0.070 Sum_probs=152.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCccc---------ccccCCCcccceeecCCCCeEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---------GSVYADGWFEGISWNSDETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~wSpDg~~la~ 169 (771)
..+...+|||||++||...+ +..++|.+ ..+.....+....... ...-.+..+.+++|||||+.|+.
T Consensus 65 ~~V~~v~fspdg~~la~g~~---~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCN---KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp SCCCEEEECTTSSEEEEECB---SCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CEEEEEEECCCCCEEEEEcC---CcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 34778999999999987643 22222222 2333322221110000 00001112468999999999998
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec
Q 004141 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp 249 (771)
.+.+...+ .|+............+......+.|.++....+++..+..|.+||+.+++.... ......+..++|+|
T Consensus 141 ~~~d~~i~--iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~ 216 (393)
T 1erj_A 141 GAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAVSP 216 (393)
T ss_dssp EETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECS
T ss_pred EcCCCeEE--EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE--EEcCCCcEEEEEEC
Confidence 87765433 333322211112223334445667888876677777789999999999876554 33444677889999
Q ss_pred -CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eec-------CCCCcccc
Q 004141 250 -LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL-------TESISSAF 320 (771)
Q Consensus 250 -Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l-------t~~~~~~~ 320 (771)
||+. |+..+ .+..|.++|+ .++.. ..+ ..+...+.
T Consensus 217 ~~~~~----l~~~s---------------~d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 217 GDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp TTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSCEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEeecccccCCCCCCCCEE
Confidence 7776 66554 2336777787 44432 233 34455688
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce--eeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
+..|+|||+.|+..+.+. .|.+||+.+.......... ......+ .+ +...+..++|++
T Consensus 261 ~v~~~~~g~~l~s~s~d~-----------~v~~wd~~~~~~~~~~~~~~~~~~~~~~--------~~-h~~~v~~~~~~~ 320 (393)
T 1erj_A 261 SVVFTRDGQSVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEVTY--------IG-HKDFVLSVATTQ 320 (393)
T ss_dssp EEEECTTSSEEEEEETTS-----------EEEEEEC---------------CEEEEE--------EC-CSSCEEEEEECG
T ss_pred EEEECCCCCEEEEEeCCC-----------EEEEEECCCCCCcccccCCCCCcceEEE--------ec-ccCcEEEEEECC
Confidence 999999999988766553 4888888664431110000 0000000 00 111244678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeeEEee
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTL 442 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~ 442 (771)
|++.|+ +...++. +..+|+.+++...... ....+....+++
T Consensus 321 ~~~~l~-sgs~D~~--v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 321 NDEYIL-SGSKDRG--VLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp GGCEEE-EEETTSE--EEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCEEE-EEeCCCe--EEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 998664 5444554 5555888887654433 333333344443
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=138.02 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=86.4
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHH------CCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~------~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+|..++...+.+. ....+.||++||++++ ...|...+..|++ .||.|+++|+|| +|.+....
T Consensus 93 ~g~~i~~~~~~~~----~~~~~pllllHG~~~s--~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG---~G~S~~~~--- 160 (408)
T 3g02_A 93 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSGPP--- 160 (408)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCCSC---
T ss_pred CCEEEEEEEecCC----CCCCCeEEEECCCCCc--HHHHHHHHHHHhcccccccCceEEEEECCCC---CCCCCCCC---
Confidence 6888988777653 2345779999998776 4468888888877 699999999999 55443211
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCC-eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~-ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
.......+++.+.+..+++.- ..+ +++++||||||.+++.++.++|+++...+..+++
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~l--g~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHh--CCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 011234667777666666652 344 8999999999999999999998766666655443
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=129.64 Aligned_cols=210 Identities=15% Similarity=0.073 Sum_probs=124.5
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcE---EE----------EECCCCCCCCChhhhhc---CCCCccccchhhHH
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LL----------IVNYRGSLGFGEEALQS---LPGKVGSQDVNDVL 601 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~---Vv----------~~d~rG~~~~g~~~~~~---~~~~~~~~~~~D~~ 601 (771)
+.||++||.+.+ ...|...+..|+++++. |+ .+|-++....+...... ..........+++.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 458899997665 45688899999888763 33 33322111000000000 00001112245666
Q ss_pred HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----ceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 602 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 602 ~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
++++.+.++. +.+++.++||||||.+++.++.++|+ +++++|+.++..+......... .+.
T Consensus 82 ~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~--------~~~---- 147 (254)
T 3ds8_A 82 IAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGM--------DLS---- 147 (254)
T ss_dssp HHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCS--------CTT----
T ss_pred HHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccc--------ccc----
Confidence 6667777663 34789999999999999999999988 8999999888654322110000 000
Q ss_pred ccCCCCCC-hhhHHHHhhcCcccccCCCCCcEEEEeeC------CCCccCcHHHHHHHHHHHhCCCCEEEEEeCC--CCc
Q 004141 677 DSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQYARALREKGVETKVIVFPN--DVH 747 (771)
Q Consensus 677 ~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~lii~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~~H 747 (771)
+...+. ......+... ...+.+ ++|+|.|+|+ .|..||+..++.+...+.......+...+.+ ++|
T Consensus 148 --~~~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~~~~~~~~~~~g~~a~H 222 (254)
T 3ds8_A 148 --FKKLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGSAKAYIEDIQVGEDAVH 222 (254)
T ss_dssp --CSSCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTTBSEEEEEEEESGGGCG
T ss_pred --cccCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhccCcceEEEEEeCCCCch
Confidence 001111 1111111111 111222 6899999999 9999999998888777765433455556655 679
Q ss_pred cCCCCCChHHHHHHHHHHHHHhh
Q 004141 748 GIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
..... +. ++.+.+..||+++.
T Consensus 223 s~l~~-~~-~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 223 QTLHE-TP-KSIEKTYWFLEKFK 243 (254)
T ss_dssp GGGGG-SH-HHHHHHHHHHHTCC
T ss_pred hcccC-CH-HHHHHHHHHHHHhc
Confidence 76533 33 68899999998764
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=129.47 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=133.6
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCC--C---C----
Q 004141 517 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGS--L---G---- 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~-----~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~--~---~---- 579 (771)
-|.++...+|.|+++. ..+++|+|+++||.+.+ ...|.. ..+.+.+.+..+++++..-. . +
T Consensus 24 l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~~~~~~~~~ 101 (299)
T 4fol_A 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp TSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEEECSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--hHHHHHhchHhHHHHHcCchhhccCCCcceeecCCCcccc
Confidence 3677888999998763 35789999999996554 223332 23455678999999984311 0 0
Q ss_pred --CCh--hhh-hcC------CCCccccchhhHHHHHHHHHHcCC-------CCCCeEEEEEcChhHHHHHHHHhhC--CC
Q 004141 580 --FGE--EAL-QSL------PGKVGSQDVNDVLTAIDHVIDMGL-------ANPSKVTVVGGSHGGFLTTHLIGQA--PD 639 (771)
Q Consensus 580 --~g~--~~~-~~~------~~~~~~~~~~D~~~~i~~l~~~~~-------~d~~ri~l~G~S~GG~~a~~~a~~~--p~ 639 (771)
.|. .+. +.. ...+...-.+++.. ++.++.. .+.++.+|.|+||||+.|+.++.++ |+
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~---~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~~~~~~ 178 (299)
T 4fol_A 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQ---TLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGK 178 (299)
T ss_dssp SSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHH---HHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHHTGGGT
T ss_pred cccccCCccccccccCccccCccHHHHHHHHhHH---HHHHhcccccccccccccceEEEecCchHHHHHHHHHhCCCCC
Confidence 000 000 000 00000111233333 3333322 2456899999999999999999985 67
Q ss_pred ceeEEEecCCccchhhhhcCCCCCcchh---hhhccCCCCccCCCCCChhhHHHHhhcCccccc---CCC-CCcEEEEee
Q 004141 640 KFVAAAARNPLCNLALMVGTTDIPDWCY---VESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKV-KTPTIFLLG 712 (771)
Q Consensus 640 ~~~~~v~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i-~~P~lii~G 712 (771)
.++++.+.+|.++.... .|.. ...++. +...+...++...+ .+. ..+++|-+|
T Consensus 179 ~~~~~~s~s~~~~p~~~-------~~~~~~~~~~~g~-------------~~~~~~~~d~~~l~~~~~~~~~~~i~id~G 238 (299)
T 4fol_A 179 RYKSCSAFAPIVNPSNV-------PWGQKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVG 238 (299)
T ss_dssp CCSEEEEESCCCCGGGS-------HHHHHHHHHHTC------------------CGGGCHHHHGGGSCCCTTCCEEEEEE
T ss_pred ceEEEEecccccCcccc-------ccccccccccccc-------------chhhhhhcCHHHHHHhcccCCCCceEEEec
Confidence 88999999988764321 1110 011111 11122233333222 222 357999999
Q ss_pred CCCCccCcH-HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 713 AQDLRVPVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 713 ~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+.|.+.... ..+.|.++++++|.+ +++...||.+|.+.. ...++++-+.|..++|+
T Consensus 239 ~~D~f~~~~l~~~~f~~a~~~~g~~~~~~~r~~~GydHsy~f---~~~fi~dhl~fha~~Lg 297 (299)
T 4fol_A 239 DSDPFLEEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTCTTHHHHTCTHHHHHHHTTSTTTTCEEEEEETTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred CCCcchhhhcCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH---HHHHHHHHHHHHHHhcC
Confidence 999886321 235788889888876 788899998997531 23456777889888875
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-11 Score=127.32 Aligned_cols=262 Identities=8% Similarity=0.035 Sum_probs=146.0
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.++++++++.++.... ...++.++ ..++..+.+.... .. ..+.|||||+++++...
T Consensus 4 g~~~~~~~~~~v~~~~----~~~v~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~~~v~~~------- 62 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGP----------GTAMMAPDNRTAYVLNN------- 62 (349)
T ss_dssp CCCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSS----------CEEEECTTSSEEEEEET-------
T ss_pred cccccCCCEEEEEeCC----CCeEEEEECCCCcEEEEEecCCCCCC----------ceeEECCCCCEEEEEeC-------
Confidence 3567887776554433 23566666 5555555555443 23 48899999997776532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCC
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGL 254 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~ 254 (771)
....|++||+.+++......... ...+..++|||||+.
T Consensus 63 ------------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~- 105 (349)
T 1jmx_B 63 ------------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE- 105 (349)
T ss_dssp ------------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE-
T ss_pred ------------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCE-
Confidence 23689999999887654311121 123678899999997
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee---cCCCCccccceeecCCCCEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---lt~~~~~~~~p~~SpDG~~l 331 (771)
|++........+. .+ ......|+++|+ .+++... .......+....|||||+ |
T Consensus 106 ---l~~~~~~~~~~~~--~~-~~~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l 161 (349)
T 1jmx_B 106 ---VYATVNPTQRLND--HY-VVKPPRLEVFST-----------------ADGLEAKPVRTFPMPRQVYLMRAADDGS-L 161 (349)
T ss_dssp ---EEEEEEEEEECSS--CE-EECCCEEEEEEG-----------------GGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred ---EEEEccccccccc--cc-ccCCCeEEEEEC-----------------CCccccceeeeccCCCcccceeECCCCc-E
Confidence 7776632100000 00 011348999998 4433221 112223456677999999 5
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCcc-cee------------------------eEEecccccC-------
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE-KIV------------------------DVIPVVQCAE------- 379 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~------------------------~~~~~~~~~~------- 379 (771)
++.+ ..|+++|+.+++...... ... ....+...+.
T Consensus 162 ~~~~-------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 228 (349)
T 1jmx_B 162 YVAG-------------PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 228 (349)
T ss_dssp EEES-------------SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred EEcc-------------CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence 5421 128888887765422110 000 0000000000
Q ss_pred -------------CCCCcc----cccCCCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEe
Q 004141 380 -------------GDCFPG----LYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 441 (771)
Q Consensus 380 -------------~~~f~g----~~~~~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s 441 (771)
.+...- -........+|+| ||+.|++. ...|+.+|+.+++...............|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s 303 (349)
T 1jmx_B 229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFD 303 (349)
T ss_dssp CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEEC
T ss_pred cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEEC
Confidence 000000 0000123557889 99987766 347899999999876554333334567899
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+||+.|++. +. -..|.+.+..+.
T Consensus 304 ~dg~~l~~~--~~--~~~v~v~d~~~~ 326 (349)
T 1jmx_B 304 KKGDKLYLG--GT--FNDLAVFNPDTL 326 (349)
T ss_dssp SSSSCEEEE--SB--SSEEEEEETTTT
T ss_pred CCCCEEEEe--cC--CCeEEEEecccc
Confidence 999988873 22 267888876543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-11 Score=125.92 Aligned_cols=299 Identities=10% Similarity=0.018 Sum_probs=161.3
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.+|||+.|+... ..+.+.+|++............. .....+...+|||||++||..+... ...
T Consensus 24 ~sp~g~~las~~---------~D~~i~iw~~~~~~~~~~~~~~~---~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~ 86 (345)
T 3fm0_A 24 WNPAGTLLASCG---------GDRRIRIWGTEGDSWICKSVLSE---GHQRTVRKVAWSPCGNYLASASFDA-----TTC 86 (345)
T ss_dssp ECTTSSCEEEEE---------TTSCEEEEEEETTEEEEEEEECS---SCSSCEEEEEECTTSSEEEEEETTS-----CEE
T ss_pred ECCCCCEEEEEc---------CCCeEEEEEcCCCcceeeeeecc---ccCCcEEEEEECCCCCEEEEEECCC-----cEE
Confidence 467888777543 23456666664331100111111 1224588899999999998876543 344
Q ss_pred Ee--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC---CCCccCCCCCCccc
Q 004141 129 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGD 203 (771)
Q Consensus 129 ~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 203 (771)
+| ..+....+..+. +..+. +..++|+|||+.|+..+.+...+ .|+....... .....+......+.
T Consensus 87 iw~~~~~~~~~~~~~~-~h~~~------v~~v~~sp~~~~l~s~s~D~~v~--iwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLE-GHENE------VKSVAWAPSGNLLATCSRDKSVW--VWEVDEEDEYECVSVLNSHTQDVKHVV 157 (345)
T ss_dssp EEEECCC-EEEEEEEC-CCSSC------EEEEEECTTSSEEEEEETTSCEE--EEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred EEEccCCCeEEEEEcc-CCCCC------ceEEEEeCCCCEEEEEECCCeEE--EEECCCCCCeEEEEEecCcCCCeEEEE
Confidence 55 222222222221 11112 26899999999999988766433 3332211110 11112333334567
Q ss_pred ccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 204 WEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
|.++....+++..+..|.+||..+++.. .+ ......+..++|+|||+. |+..+. +.
T Consensus 158 ~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~----l~s~s~---------------D~ 216 (345)
T 3fm0_A 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATL--EGHESTVWSLAFDPSGQR----LASCSD---------------DR 216 (345)
T ss_dssp ECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECTTSSE----EEEEET---------------TS
T ss_pred ECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--cCCCCceEEEEECCCCCE----EEEEeC---------------CC
Confidence 8888666666677789999999887643 33 334456889999999997 776652 12
Q ss_pred eeEEEec--ccccchhhhhhhhcCCCCCCc-ceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 281 ALYAVRV--SLYKSEASELELKESSSEDLP-VVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 281 ~l~~~d~--~~~~~~~~~~~~~~~~~~~~~-~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.|.++++ +... ..... ........ ...+.. +...+...+|+|+|..|+..+.+. .|.++++
T Consensus 217 ~v~iW~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----------~i~vw~~ 281 (345)
T 3fm0_A 217 TVRIWRQYLPGNE---QGVAC-SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-----------AIRVFQE 281 (345)
T ss_dssp CEEEEEEECTTCT---TCCCC-C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-----------CEEEEEE
T ss_pred eEEEeccccCCCC---cccee-eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-----------eEEEEEe
Confidence 3444443 1000 00000 00000000 112222 345678899999999998877653 3666776
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.++......... ....... .+...+..++|+|++..++++.+.++...||.+.
T Consensus 282 ~~~~~~~~~~~~-~~~~~~~---------~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 282 DPNSDPQQPTFS-LTAHLHQ---------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp CTTSCTTSCCEE-EEEEETT---------SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred CCCCCcceeeEE-EEeeecc---------cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 554321110000 0000000 0112356788999987677888888888888654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-11 Score=131.06 Aligned_cols=259 Identities=9% Similarity=0.012 Sum_probs=151.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||++||-.+.+. ... + ++..+.+. +..+. ...++||||| ..+
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~-----TV~-d--~~~~~~l~---gh~~~------v~~V~FsPdg-------~~~---- 67 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDI-----SIG-Q--PKYAKDIN---CNSKN------LFHVKEFPLE-------FEN---- 67 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSE-----EEE-E--ECCCSCCS---SBGGG------TEEEEEECCC-------CCC----
T ss_pred ccEEEEEECCCCCEEEEEcCCc-----eee-c--ccccceec---CCCcc------EEEEEECCCC-------Ccc----
Confidence 4578899999999998754432 222 2 11111111 11112 2588999999 111
Q ss_pred CCccCCCCCCCCCCc-cCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC-----ccceEEEecCCC
Q 004141 179 PTFSLGSTKGGSSDK-DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-----SVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~-----~~~~~~wspDg~ 252 (771)
.|............ .+..+.....|+||.....+......+.+||.++ ....+ . .+. .+..++|||||+
T Consensus 68 -~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l--~-~~~~~~~~sv~svafSPDG~ 142 (588)
T 2j04_A 68 -KLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL--D-SKGNLSSRTYHCFEWNPIES 142 (588)
T ss_dssp -TTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC--C-CSSCSTTTCEEEEEECSSSS
T ss_pred -eEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec--c-CCCccccccEEEEEEcCCCC
Confidence 12111111111111 2245556778999977777777888999999655 33333 2 222 477999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--------eec----CCCCcccc
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--------VNL----TESISSAF 320 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~l----t~~~~~~~ 320 (771)
. |+..+ .++.|.++|+ .++.. ..+ ..+...+.
T Consensus 143 ~----LAsgs---------------~DGtVkIWd~-----------------~~~~l~~~~~i~l~ti~~~~~gh~~~V~ 186 (588)
T 2j04_A 143 S----IVVGN---------------EDGELQFFSI-----------------RKNSENTPEFYFESSIRLSDAGSKDWVT 186 (588)
T ss_dssp C----EEEEE---------------TTSEEEEEEC-----------------CCCTTTCCCCEEEEEEECSCTTCCCCEE
T ss_pred E----EEEEc---------------CCCEEEEEEC-----------------CCCccccccceeeeeeecccccccccEE
Confidence 8 88876 3447778887 44432 333 33445689
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
+.+||||| |+..+.+ ..+++||+.++....+... +. ..+...+..++|+ |
T Consensus 187 sVawSPdg--Laass~D-----------~tVrlWd~~~~~~~~~~~t-------L~--------~~h~~~V~svaFs--g 236 (588)
T 2j04_A 187 HIVWYEDV--LVAALSN-----------NSVFSMTVSASSHQPVSRM-------IQ--------NASRRKITDLKIV--D 236 (588)
T ss_dssp EEEEETTE--EEEEETT-----------CCEEEECCCSSSSCCCEEE-------EE--------CCCSSCCCCEEEE--T
T ss_pred EEEEcCCc--EEEEeCC-----------CeEEEEECCCCccccceee-------ec--------ccccCcEEEEEEE--C
Confidence 99999999 5555544 3488888877663210000 00 0011246788899 4
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEec-CCCCCceeeEE--eecCCEEEEEEeCCCCCCeEEEE
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSWSLL--TLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~--s~dg~~l~~~~~~~~~p~~l~~~ 463 (771)
+.|+.+ . . ..+..+++.+++...+. .....+....| ++|+..++.+..+.. .++..
T Consensus 237 ~~LASa-~-~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~---klw~~ 295 (588)
T 2j04_A 237 YKVVLT-C-P--GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY---KVLLE 295 (588)
T ss_dssp TEEEEE-C-S--SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE---EEEES
T ss_pred CEEEEE-e-C--CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC---EEEee
Confidence 655443 3 3 35666688888885554 44445666788 888865554443322 56654
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=133.58 Aligned_cols=210 Identities=11% Similarity=0.085 Sum_probs=123.9
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH-HHHHcC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~ 611 (771)
..+..|.||++||.+.......|......|. .+|.|+.+|+|| +|.+.. ....++++.+.+. .+.+.
T Consensus 63 ~~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~-------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 63 DGPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPG---YEEGEP-------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CCSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTT---SSTTCC-------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-
Confidence 3455689999999776532256777777764 569999999999 544311 1123455554443 44443
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCccCCCCCC--
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPS-- 684 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-- 684 (771)
.+.+++.|+||||||.+++.++.++| ++++++|+.++........ ...+. ....+..... .....
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~ 202 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDA----MNAWLEELTATLFDRET---VRMDDTR 202 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHH----HHHHHHHHHGGGCCCCS---SCCCHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhH----HHHHHHHHHHHHHhCcC---CccchHH
Confidence 34568999999999999999999987 4899999988764321100 00000 0000000000 00000
Q ss_pred hhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCCCChHHHHHHHH
Q 004141 685 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQSDFESFLNIG 763 (771)
Q Consensus 685 ~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~ 763 (771)
......+..........++++|+|+++|+ |..+++.. .. +... ..+++++++++ +|.....+....+...+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~i~~P~lii~G~-d~~~~~~~-~~----~~~~~~~~~~~~~i~g-gH~~~~~e~~~~~~~~i~ 275 (300)
T 1kez_A 203 LTALGAYDRLTGQWRPRETGLPTLLVSAG-EPMGPWPD-DS----WKPTWPFEHDTVAVPG-DHFTMVQEHADAIARHID 275 (300)
T ss_dssp HHHHHHHHHHTTTCCCCCCSCCBEEEEES-SCSSCCCS-SC----CSCCCSSCCEEEEESS-CTTTSSSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCCCCEEEEEeC-CCCCCCcc-cc----hhhhcCCCCeEEEecC-CChhhccccHHHHHHHHH
Confidence 00111111111111346789999999995 66666554 22 2221 22478999999 998764355568888999
Q ss_pred HHHHHh
Q 004141 764 LWFKKY 769 (771)
Q Consensus 764 ~fl~~~ 769 (771)
+||++.
T Consensus 276 ~fl~~~ 281 (300)
T 1kez_A 276 AWLGGG 281 (300)
T ss_dssp HHHTCC
T ss_pred HHHHhc
Confidence 998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-10 Score=118.90 Aligned_cols=222 Identities=12% Similarity=0.154 Sum_probs=139.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...+|||||++|+..+... ...+|+ .++..+.... ... +..+.|+|+++.|+..+.+
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~s~D-- 128 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDK-----TLRLWDVATGETYQRFVGHKSD----------VMSVDIDKKASMIISGSRD-- 128 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC----------EEEEEECTTSCEEEEEETT--
T ss_pred ccEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCeeEEEccCCCc----------EEEEEEcCCCCEEEEEeCC--
Confidence 5578899999999998776544 566773 3333222221 122 2689999999988876543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC---
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE--- 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~--- 252 (771)
..|.+||+.+.....+ ......+..+.|+|+++
T Consensus 129 ------------------------------------------~~i~vwd~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~ 164 (319)
T 3frx_A 129 ------------------------------------------KTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKADD 164 (319)
T ss_dssp ------------------------------------------SCEEEEETTSCEEEEE--CCCSSCEEEEEECCC-----
T ss_pred ------------------------------------------CeEEEEECCCCeEEEE--eccCCcEEEEEEccCCCCCC
Confidence 5788999987777777 44555677889998543
Q ss_pred ---CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCC
Q 004141 253 ---GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDG 328 (771)
Q Consensus 253 ---~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG 328 (771)
. |+..+ .+..|.++|+ ...+ ...+..+...+....|||||
T Consensus 165 ~~~~----l~s~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 165 DSVT----IISAG---------------NDKMVKAWNL-----------------NQFQIEADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp -CCE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCCSCEEEEEECTTS
T ss_pred CccE----EEEEe---------------CCCEEEEEEC-----------------CcchhheeecCCCCcEEEEEEcCCC
Confidence 3 44333 3346888887 4443 34566677778999999999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
+.|+..+.+. .|.+||+.+++........ ..+..++|+||+..|+...
T Consensus 209 ~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~sp~~~~la~~~- 256 (319)
T 3frx_A 209 TLIASAGKDG-----------EIMLWNLAAKKAMYTLSAQ--------------------DEVFSLAFSPNRYWLAAAT- 256 (319)
T ss_dssp SEEEEEETTC-----------EEEEEETTTTEEEEEEECC--------------------SCEEEEEECSSSSEEEEEE-
T ss_pred CEEEEEeCCC-----------eEEEEECCCCcEEEEecCC--------------------CcEEEEEEcCCCCEEEEEc-
Confidence 9988776553 5889998775432110000 1245678999998765443
Q ss_pred eCCeeEEEEEECCCCcEEE-ecCCC--------CCceeeEEeecCCEEEEEEe
Q 004141 409 WGSSQVIISVNVSSGELLR-ITPAE--------SNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 409 ~~~~~~l~~~d~~tg~~~~-l~~~~--------~~~~~~~~s~dg~~l~~~~~ 452 (771)
.....+| +++++.... +.... .......|+|||+.|+....
T Consensus 257 -~~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 257 -ATGIKVF--SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp -TTEEEEE--EETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred -CCCcEEE--EeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 3344555 444444332 22111 12234688999998876543
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=132.46 Aligned_cols=149 Identities=14% Similarity=0.109 Sum_probs=99.2
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCcee-EEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHH
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV-AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 689 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~-~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (771)
..+|++||+|+|+|+||++++.++..+|++|+ ++++.++..... ..+.. ....+.. .+...+..+...
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~----~~~~~---~~~~~~~----~~~~~~~~~~~~ 74 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDC----ARNQY---YTSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTT----TSSSC---GGGGSTT----CCCCCHHHHHHH
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccc----cchHH---HHHHhhc----cCCCCCCHHHHH
Confidence 45889999999999999999999999999998 877666532110 00000 0000000 000001112222
Q ss_pred HHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCCCC------------
Q 004141 690 RFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQS------------ 754 (771)
Q Consensus 690 ~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~------------ 754 (771)
.....+++..+.+++ +|+||+||+.|.+||++++++++++|++.+. +++++.+++++|.+.....
T Consensus 75 ~~~~~~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~g~~~~ve~~~~~g~gH~~~~~~~~~~~~~c~~~~~ 154 (318)
T 2d81_A 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTS 154 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEEESSCCTTCCCTTSCCT
T ss_pred HHhhcccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHhcCCCcceEEEEeCCCCCCCccCCcccCccccccCCC
Confidence 222224555555554 6999999999999999999999999998874 7999999999998643221
Q ss_pred ------hHHHHHHHHHHHHHhh
Q 004141 755 ------DFESFLNIGLWFKKYC 770 (771)
Q Consensus 755 ------~~~~~~~i~~fl~~~L 770 (771)
..+...+|++||...|
T Consensus 155 pyi~~~~~d~~~~i~~ff~g~~ 176 (318)
T 2d81_A 155 PYISNCNYDGAGAALKWIYGSL 176 (318)
T ss_dssp TCEEECSSCHHHHHHHHHHSSC
T ss_pred CcccCCCChHHHHHHHHHhccC
Confidence 2466778999986443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-11 Score=149.41 Aligned_cols=235 Identities=12% Similarity=0.044 Sum_probs=154.7
Q ss_pred cccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec
Q 004141 154 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 233 (771)
Q Consensus 154 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l 233 (771)
...+++|||||+.|+.....+... .|+............+........|+++....+++.....|.+||+.+++...+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~--i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIK--IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCE--EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEE--EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 346889999999999987665432 233222222222223444556677888876677777788999999999988776
Q ss_pred cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004141 234 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 234 ~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
......+..+.|+||++ ++..+ .+..|.++|+ .+++ ...+
T Consensus 1041 --~~~~~~v~~~~~~~~~~-----l~~~~---------------~dg~v~vwd~-----------------~~~~~~~~~ 1081 (1249)
T 3sfz_A 1041 --QAHQETVKDFRLLQDSR-----LLSWS---------------FDGTVKVWNV-----------------ITGRIERDF 1081 (1249)
T ss_dssp --BCCSSCEEEEEECSSSE-----EEEEE---------------SSSEEEEEET-----------------TTTCCCEEE
T ss_pred --ecCCCcEEEEEEcCCCc-----EEEEE---------------CCCcEEEEEC-----------------CCCceeEEE
Confidence 45556788899999876 55444 2337888998 4444 4566
Q ss_pred CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCC
Q 004141 313 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 392 (771)
Q Consensus 313 t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~ 392 (771)
..+...+...+|||||+.|+..+.+. .|.+||+.++.......+. ...+.
T Consensus 1082 ~~~~~~v~~~~~s~d~~~l~s~s~d~-----------~v~iwd~~~~~~~~~l~~h-------------------~~~v~ 1131 (1249)
T 3sfz_A 1082 TCHQGTVLSCAISSDATKFSSTSADK-----------TAKIWSFDLLSPLHELKGH-------------------NGCVR 1131 (1249)
T ss_dssp ECCSSCCCCEEECSSSSSCEEECCSS-----------CCCEECSSSSSCSBCCCCC-------------------SSCEE
T ss_pred cccCCcEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCcceeeeeccC-------------------CCcEE
Confidence 66777889999999999998777653 4888888776643221111 11245
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec----------CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~----------~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
.++|||||+.|+ +...++...+| |+.+++..... .....+....|++||+.++... ..+.+
T Consensus 1132 ~~~~s~dg~~la-t~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~v 1202 (1249)
T 3sfz_A 1132 CSAFSLDGILLA-TGDDNGEIRIW--NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKW 1202 (1249)
T ss_dssp EEEECSSSSEEE-EEETTSCCCEE--ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEE
T ss_pred EEEECCCCCEEE-EEeCCCEEEEE--ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEE
Confidence 678999999664 44455554454 77777644321 2223456678999999886542 35777
Q ss_pred EEeccc
Q 004141 463 GYFVDK 468 (771)
Q Consensus 463 ~~~~~~ 468 (771)
.++.++
T Consensus 1203 wd~~~g 1208 (1249)
T 3sfz_A 1203 WNVATG 1208 (1249)
T ss_dssp BCSSSC
T ss_pred EECCCC
Confidence 766544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-11 Score=125.15 Aligned_cols=262 Identities=11% Similarity=0.053 Sum_probs=157.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||.....+ ...+|+ .+...+....... ......|+|||+.|+..+.+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTET---------PVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS---------CEEEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeeccCC---------cEEEEEEeCCCCEEEEECCCCEE
Confidence 4588999999999998776543 566773 3333333322111 12588999999999988876543
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc-eeeccCCCCCCccceEEEecC-CCCC
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPL-NEGL 254 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~-~~~l~~~~~~~~~~~~~wspD-g~~~ 254 (771)
+ .|+............+......+.|.++....+++..+..|.+||+.++. ..... ......+..++|+|+ ++.
T Consensus 80 ~--vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~- 155 (304)
T 2ynn_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (304)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTTE-
T ss_pred E--EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCCE-
Confidence 3 34432222222233344555567788886666777778999999998874 33321 334456788999995 454
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecC-CCCccccceeecC--CCCE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT-ESISSAFFPRFSP--DGKF 330 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt-~~~~~~~~p~~Sp--DG~~ 330 (771)
|+..+ .+..|.++|+ ..+ ....+. .....+....|+| |++.
T Consensus 156 ---l~sgs---------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (304)
T 2ynn_A 156 ---FASGC---------------LDRTVKVWSL-----------------GQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (304)
T ss_dssp ---EEEEE---------------TTSEEEEEET-----------------TCSSCSEEEECCCTTCEEEEEECCSTTCCE
T ss_pred ---EEEEe---------------CCCeEEEEEC-----------------CCCCccceeccCCcCcEEEEEEEEcCCCCE
Confidence 44443 2336888887 332 223332 3334456667765 7788
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 410 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~ 410 (771)
|+..+.+ ..|.+||+.+++......+ +...+...+|+|+++.| ++...+
T Consensus 201 l~s~s~D-----------~~i~iWd~~~~~~~~~~~~-------------------h~~~v~~~~~~p~~~~l-~s~s~D 249 (304)
T 2ynn_A 201 MITASDD-----------LTIKIWDYQTKSCVATLEG-------------------HMSNVSFAVFHPTLPII-ISGSED 249 (304)
T ss_dssp EEEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEEECSSSSEE-EEEETT
T ss_pred EEEEcCC-----------CeEEEEeCCCCccceeeCC-------------------CCCCEEEEEECCCCCEE-EEEcCC
Confidence 8766654 3588999877543211100 01124467899999844 566666
Q ss_pred CeeEEEEEECCCCcEEEecCC-CCCceeeEEeecCCE
Q 004141 411 SSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDN 446 (771)
Q Consensus 411 ~~~~l~~~d~~tg~~~~l~~~-~~~~~~~~~s~dg~~ 446 (771)
+...|| |+.+++..+.... ........++|+++.
T Consensus 250 g~i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 250 GTLKIW--NSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp SCEEEE--ETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred CeEEEE--ECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 666665 7878876654433 233333455676654
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.5e-12 Score=123.24 Aligned_cols=198 Identities=11% Similarity=0.098 Sum_probs=122.6
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCC---cEEEEECCCCCCC--CChhhh----hc-----CCCC-cc----ccchh
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVG---YSLLIVNYRGSLG--FGEEAL----QS-----LPGK-VG----SQDVN 598 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G---~~Vv~~d~rG~~~--~g~~~~----~~-----~~~~-~~----~~~~~ 598 (771)
+.||++||.+.+ ...|..++..|++.| +.|+.+|+++.+. +...+. +. ...+ .+ ....+
T Consensus 5 ~pvv~iHG~~~~--~~~~~~~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a~ 82 (250)
T 3lp5_A 5 APVIMVPGSSAS--QNRFDSLITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQAV 82 (250)
T ss_dssp CCEEEECCCGGG--HHHHHHHHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHHH
T ss_pred CCEEEECCCCCC--HHHHHHHHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHHH
Confidence 458889996654 457888899998876 6788777665221 000000 00 0000 00 12246
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----CCceeEEEecCCccchhhhhcCCCCCcchhhhhccC
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 673 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~-----p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 673 (771)
++.++++.+.++. +.+++.|+||||||.++..++.++ ++.++.+|++++..+.... .+.
T Consensus 83 ~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~-----~~~--------- 146 (250)
T 3lp5_A 83 WLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMEST-----STT--------- 146 (250)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCC-----CSS---------
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccc-----ccc---------
Confidence 7777788877663 457899999999999999998877 6788998888765432211 000
Q ss_pred CCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeC----CCCccCcHHHHHHHHHHHhCCCCEEEEEeC--CCCc
Q 004141 674 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA----QDLRVPVSNGLQYARALREKGVETKVIVFP--NDVH 747 (771)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~----~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~--~~~H 747 (771)
........+... ...+.+ ++|+|+|+|+ .|..||.+.++.+...+.......+.+.+. +++|
T Consensus 147 ---------~~~~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~~~~~~~~~v~g~~a~H 214 (250)
T 3lp5_A 147 ---------AKTSMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQVKHFTEITVTGANTAH 214 (250)
T ss_dssp ---------CCCHHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTTSSEEEEEECTTTTBSS
T ss_pred ---------ccCHHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhcccccceEEEEEeCCCCch
Confidence 000111122111 112222 6899999999 999999998888777776533344445554 4679
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 004141 748 GIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~ 767 (771)
..... +. ++.+.|.+||.
T Consensus 215 ~~l~e-~~-~v~~~I~~FL~ 232 (250)
T 3lp5_A 215 SDLPQ-NK-QIVSLIRQYLL 232 (250)
T ss_dssp CCHHH-HH-HHHHHHHHHTS
T ss_pred hcchh-CH-HHHHHHHHHHh
Confidence 76533 33 67788888875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.7e-11 Score=124.77 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=138.9
Q ss_pred eEEEEe-cCCcceEEEecCC---cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCC
Q 004141 125 IQFELW-SQSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~-~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (771)
.+..++ ..++..+.+.... .. ..++|||||++|++....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--------------------------- 54 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP----------MVPMVAPGGRIAYATVNK--------------------------- 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC----------CCEEECTTSSEEEEEETT---------------------------
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc----------cceEEcCCCCEEEEEeCC---------------------------
Confidence 455555 4455555555433 23 589999999988776432
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCceeeccCCCC----CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeec
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 276 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~ 276 (771)
...|++||+.+++......... ...+..++|+|||+. |++........+... .
T Consensus 55 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~~~~~~---~ 111 (337)
T 1pby_B 55 ----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT----LAIYESPVRLELTHF---E 111 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECSSCE---E
T ss_pred ----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE----EEEEecccccccccc---c
Confidence 2579999999888654311121 114668899999997 777642110000000 0
Q ss_pred cCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 277 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 277 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
.....|+++|+ .+++.............+.|||||++|++.+ ..|+++|+
T Consensus 112 ~~~~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------------~~i~~~d~ 161 (337)
T 1pby_B 112 VQPTRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------------RDLHVMDP 161 (337)
T ss_dssp ECCCEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES-------------SSEEEEET
T ss_pred ccCceEEEEEC-----------------CCCcEEEEEeCCCCcceeEECCCCCEEEEeC-------------CeEEEEEC
Confidence 02358999998 5555443333344567789999999988772 24999998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee---------------------EE
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ---------------------VI 415 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~---------------------~l 415 (771)
.+++.... +.. .. ......|+|||+.|++.....+.. .|
T Consensus 162 ~~~~~~~~----------~~~---~~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 162 EAGTLVED----------KPI---QS-------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TTTEEEEE----------ECS---TT-------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCcEeee----------eec---cc-------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 87653211 100 00 012347899998776654333322 68
Q ss_pred EEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 416 ISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+.+|+.+++...+... ........+++||+.+++. . ..|++.++.++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~ 270 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKN 270 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCC
Confidence 8999999987644322 1223457899999998876 1 57888876543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=128.08 Aligned_cols=260 Identities=9% Similarity=0.024 Sum_probs=150.8
Q ss_pred cceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC-cceEEEecCCcc
Q 004141 69 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTV 145 (771)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~ 145 (771)
...+.+.+|++... .....+... ...+...+|||+|++||...... ...+|+ .+ ...++...-.+.
T Consensus 74 s~Dg~v~iWd~~~~-~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~d~-----~v~iw~~~~~~~~~~~~~~~~~h 142 (340)
T 1got_B 74 SQDGKLIIWDSYTT-NKVHAIPLR-----SSWVMTCAYAPSGNYVACGGLDN-----ICSIYNLKTREGNVRVSRELAGH 142 (340)
T ss_dssp ETTTEEEEEETTTC-CEEEEEECS-----SSCEEEEEECTTSSEEEEEETTC-----EEEEEETTTCSBSCEEEEEEECC
T ss_pred eCCCcEEEEECCCC-CcceEeecC-----CccEEEEEECCCCCEEEEEeCCC-----eEEEEECccCCCcceeEEEecCC
Confidence 34467777776332 122222211 24578899999999998775543 455552 11 111221111111
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
.+. +....|+|+++ |+..+.+...+ .|+............+........|.++....+++..+..|.+||+
T Consensus 143 ~~~------v~~~~~~~~~~-l~s~s~d~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~ 213 (340)
T 1got_B 143 TGY------LSCCRFLDDNQ-IVTSSGDTTCA--LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213 (340)
T ss_dssp SSC------EEEEEEEETTE-EEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred Ccc------EEEEEECCCCc-EEEEECCCcEE--EEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 112 26788999986 66655544322 3332222111122223334445667887655666677889999999
Q ss_pred cCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 226 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
.+++..... ......+..++|+|||+. |+..+ .+..|.++|+ .
T Consensus 214 ~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~d~~v~iwd~-----------------~ 256 (340)
T 1got_B 214 REGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL-----------------R 256 (340)
T ss_dssp TTCSEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------T
T ss_pred CCCeeEEEE-cCCcCCEEEEEEcCCCCE----EEEEc---------------CCCcEEEEEC-----------------C
Confidence 888765431 334556889999999997 77655 2336888887 4
Q ss_pred CCcc-eecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004141 306 DLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 306 ~~~~-~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.++. ..+... ...+.+..|||||+.|+..+.+ ..|.+||+.+++......+
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~~~~--------------- 310 (340)
T 1got_B 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAG--------------- 310 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC---------------
T ss_pred CCcEEEEEccCCcccceEEEEECCCCCEEEEECCC-----------CeEEEEEcccCcEeeEeec---------------
Confidence 4332 223222 2357889999999988876654 3588999876543111000
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+|||+.| ++.+.++...||
T Consensus 311 ----h~~~v~~~~~s~dg~~l-~s~s~D~~i~iW 339 (340)
T 1got_B 311 ----HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp ----CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred ----CCCcEEEEEEcCCCCEE-EEEcCCccEEec
Confidence 11134567899999855 566667776666
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=127.04 Aligned_cols=291 Identities=12% Similarity=0.038 Sum_probs=169.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec--CCcccccccCCCcccceeecCC---CCeEEEEe
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSD---ETLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpD---g~~la~~~ 171 (771)
..+...+|||+|++++...... .....+.+| ..++...+... ...+ .+++|+|+ |+.|+..+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEKAKPI----------KCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEESSCE----------EEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecccCcE----------EEEEEcCCCCCCceEEEec
Confidence 4588899999998887765431 112244455 33333333322 2222 68999999 68888877
Q ss_pred cCCCCCCCCccCCCCC-CCCCCccCCCCCCcc------cccCCcCcccCCccCceEEEEEccCCc--eeeccCCCC--CC
Q 004141 172 EEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQG------DWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPK--SL 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~d~g~~~~~~~~~~l~v~d~~~~~--~~~l~~~~~--~~ 240 (771)
.+.... .|+..... .......+....... .|+++....+++.....|.+||+.+++ ...+..... ..
T Consensus 88 ~dg~i~--iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 88 FGGNLH--IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp TTSCEE--EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCC
T ss_pred CCCeEE--EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCC
Confidence 665432 33322221 111112222222222 456665566666677899999998875 333421111 12
Q ss_pred ccceEE----EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCC
Q 004141 241 SVGQVV----WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 316 (771)
Q Consensus 241 ~~~~~~----wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~ 316 (771)
.+..+. |+||++. |+..+ ....|+++|+ .+++........
T Consensus 166 ~v~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~~~ 209 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERV----VCAGY---------------DNGDIKLFDL-----------------RNMALRWETNIK 209 (357)
T ss_dssp CEEEEEEECCCC-CCCE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECS
T ss_pred ceEEEEEEeccCCCCCE----EEEEc---------------cCCeEEEEEC-----------------ccCceeeecCCC
Confidence 445555 7899986 66654 3347899998 666666556666
Q ss_pred ccccceeecC---CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 317 SSAFFPRFSP---DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 317 ~~~~~p~~Sp---DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
..+....|+| +|+.|+..+.+ ..|.+||+.++......... ... . ....+..
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~-----~~~----~-----~~~~v~~ 264 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLE-----------GKFHVFDMRTQHPTKGFASV-----SEK----A-----HKSTVWQ 264 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEEST-----------TEEEEEEEEEEETTTEEEEE-----EEE----C-----CSSCEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCC-----------CeEEEEeCcCCCcccceeee-----ccC----C-----CcCCEEE
Confidence 7789999999 99998877654 25888888765432211000 000 0 1113456
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCC------------------cEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSG------------------ELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg------------------~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
++|+||++.++++...++...+|.++.... .+..+......+....|+++++.|+++.+..
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d- 343 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD- 343 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT-
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC-
Confidence 789999987777877788888887764221 1223333444456678889988887555422
Q ss_pred CCCeEEEEEec
Q 004141 456 DVPQVKYGYFV 466 (771)
Q Consensus 456 ~p~~l~~~~~~ 466 (771)
..+.+.++.
T Consensus 344 --~~i~iw~~~ 352 (357)
T 3i2n_A 344 --QTVRVLIVT 352 (357)
T ss_dssp --SEEEEEEEC
T ss_pred --CcEEEEECC
Confidence 345555543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=123.47 Aligned_cols=256 Identities=13% Similarity=0.012 Sum_probs=131.5
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeE-EEEec-------C-
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL-LVVRN-------P- 119 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l-a~~~~-------~- 119 (771)
.++||+.|+.. +. . .+.++++... ++..++...+.. +....++|||||++| +++.+ .
T Consensus 47 ~spdg~~l~~~-~~-------~--~v~~~~~~~~-g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 47 FDHERKNIYGA-AM-------K--KWSSFAVKSP-TEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp ECTTSSEEEEE-EB-------T--EEEEEEEEET-TEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred ECCCCCEEEEE-cc-------c--eEEEEEECCC-CCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 46799877543 22 1 4666666422 233332211100 113347899999973 45543 1
Q ss_pred ----CCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc
Q 004141 120 ----ENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 194 (771)
Q Consensus 120 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (771)
.++.-.+|.+...++....+.. ..... ....++.|||||++|+.. ..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~spdG~~l~~~-~~--------------------- 164 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQEN------TGIHGMVFDPTETYLYSA-DL--------------------- 164 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTT------CCEEEEEECTTSSEEEEE-ET---------------------
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCC------CcceEEEECCCCCEEEEE-cC---------------------
Confidence 2233344555434444333321 10000 012488999999987554 21
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeecc--CCCC-CCccceEEEecCCCCCccEEEEEeecCcceee
Q 004141 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVK--GIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~--~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~ 270 (771)
....|++||++ +|+.+.+. ..+. ...+..++|||||+. |++... ..
T Consensus 165 ---------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~-~~---- 214 (365)
T 1jof_A 165 ---------------------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY----LYALME-AG---- 214 (365)
T ss_dssp ---------------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE----EEEEET-TT----
T ss_pred ---------------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE----EEEEEC-CC----
Confidence 22579999998 77764431 0121 345778899999997 766542 11
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-------ecCCC-C--c-------ccccee-ecCCCCEEE
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTES-I--S-------SAFFPR-FSPDGKFLV 332 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~lt~~-~--~-------~~~~p~-~SpDG~~l~ 332 (771)
....+|.++. .+++.. .+... . . ....++ |||||++|+
T Consensus 215 -------~~v~v~~~~~-----------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 215 -------NRICEYVIDP-----------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp -------TEEEEEEECT-----------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred -------CeEEEEEEeC-----------------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 1113444443 334321 12111 0 1 356788 999999885
Q ss_pred EEecCCCCCCCCccccccceeeecC-CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc---CCCEEEEEee
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS---DGCTMLLSSI 408 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~---Dg~~l~~~~~ 408 (771)
....... ......|.+++++ +++...+ ...... .......++|+| ||++|++...
T Consensus 271 v~~~~~~-----~~~~~~i~v~~~~~~g~~~~~-------~~~~~~---------~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 271 ASSRANK-----FELQGYIAGFKLRDCGSIEKQ-------LFLSPT---------PTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp EEEEESS-----TTSCCEEEEEEECTTSCEEEE-------EEEEEC---------SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred EECCCCC-----CCCCCeEEEEEECCCCCEEEe-------eeeeec---------CCCCcccceecCCCcCCCEEEEEEc
Confidence 4332210 0001257777775 3332111 000000 001245678999 8998877655
Q ss_pred eCCeeEEEEEECC
Q 004141 409 WGSSQVIISVNVS 421 (771)
Q Consensus 409 ~~~~~~l~~~d~~ 421 (771)
..+...+|.++.+
T Consensus 330 ~~~~v~v~~~~~~ 342 (365)
T 1jof_A 330 QEGWLEIYRWKDE 342 (365)
T ss_dssp SSCEEEEEEEETT
T ss_pred CCCeEEEEEEchh
Confidence 5567778877753
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=131.78 Aligned_cols=278 Identities=11% Similarity=0.061 Sum_probs=163.3
Q ss_pred EEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcc
Q 004141 56 AMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 135 (771)
Q Consensus 56 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~ 135 (771)
++|..+..-+..+...+.+.+|++.... ....+.. ....+...+|+|+|+.|+..+... .+.+|+-...
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~-----h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~ 182 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKG-----HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGF 182 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEec-----cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC
Confidence 3333333334444455677887774332 1222221 225688899999999888765543 3344521111
Q ss_pred eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCc
Q 004141 136 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 215 (771)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~ 215 (771)
..+..+. +..+ .+.+++|+|||+.|+..+.++..+ .|+............+..+.....+.++....+++.
T Consensus 183 ~~~~~~~-~h~~------~V~~v~~~p~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 183 ECIRTMH-GHDH------NVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp CEEECCC-CCSS------CEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred ceeEEEc-CCCC------CEEEEEEeCCCCEEEEEeCCCeEE--EEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 2222221 1111 236899999999998887665432 343322222222233444555566777755556666
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCC----------------ccEEEEEeecCcceeeeeeeeccCC
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL----------------HQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~----------------~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
.+..|.+||+.+++..... ......+..+.|+|++... +.+|+..+ .+
T Consensus 254 ~D~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs---------------~D 317 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS---------------RD 317 (410)
T ss_dssp TTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE---------------TT
T ss_pred CCCeEEEEECCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe---------------CC
Confidence 7789999999888765431 3444567888999974210 00033333 34
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..|.++|+ .++. ...+..+...+....|+|+|++|+..+.+ ..|.+||+.+
T Consensus 318 ~~i~iwd~-----------------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----------~~i~vwd~~~ 369 (410)
T 1vyh_C 318 KTIKMWDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKN 369 (410)
T ss_dssp SEEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTT
T ss_pred CeEEEEEC-----------------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCC
Confidence 47889998 4444 45566667778899999999998876654 3588999876
Q ss_pred CCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 359 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
++....... +...+..++|+|++..| ++.+.++...+|.
T Consensus 370 ~~~~~~~~~-------------------h~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 370 KRCMKTLNA-------------------HEHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 408 (410)
T ss_dssp SCCCEEEEC-------------------CSSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred CceEEEEcC-------------------CCCcEEEEEEcCCCCEE-EEEeCCCcEEEEe
Confidence 553211110 11134567899999855 5666677777774
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-11 Score=145.98 Aligned_cols=236 Identities=9% Similarity=0.028 Sum_probs=146.5
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
-..+|||..|+... ..+.+.+|++... .....+.... ..+..++|||||++||+....+ .
T Consensus 19 i~~sp~~~~la~~~---------~~g~v~iwd~~~~-~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg-----~ 78 (814)
T 3mkq_A 19 IDFHPTEPWVLTTL---------YSGRVEIWNYETQ-VEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----R 78 (814)
T ss_dssp EEECSSSSEEEEEE---------TTSEEEEEETTTT-EEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----E
T ss_pred EEECCCCCEEEEEe---------CCCEEEEEECCCC-ceEEEEecCC-----CcEEEEEEeCCCCEEEEEeCCC-----e
Confidence 34577898888764 2346777766332 2223333222 5688999999999999876543 4
Q ss_pred EEEe--cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcc
Q 004141 127 FELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 202 (771)
+.+| ..++....... ... +..++|||||++|+..+.+.... .|+.... ........+.......
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~i~--vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDY----------IRSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSC----------EEEEEECSSSSEEEEEETTSEEE--EEEGGGTSEEEEEEECCSSCEEEE
T ss_pred EEEEECCCCcEEEEEecCCCC----------EEEEEEeCCCCEEEEEcCCCEEE--EEECCCCceEEEEEcCCCCcEEEE
Confidence 5566 33433333321 222 26899999999999877655332 2322111 1111112233334456
Q ss_pred cccC-CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 203 DWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 203 ~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
.|++ +....+++.....|.+||+.+++............+..+.|+| ||+. |+..+ .+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~~~~---------------~d 207 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY----MITAS---------------DD 207 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE----EEEEC---------------TT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE----EEEEe---------------CC
Confidence 7887 5445556666789999999877644331123335678899999 8886 66654 33
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..|.++|+ .+++ ...+..+...+....|+|||+.|+..+.+. .|.+||+.+
T Consensus 208 g~i~~~d~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~v~vwd~~~ 259 (814)
T 3mkq_A 208 LTIKIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSST 259 (814)
T ss_dssp SEEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTT
T ss_pred CEEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCC
Confidence 47888887 4443 455556667788999999999888776543 488888877
Q ss_pred CCC
Q 004141 359 NGN 361 (771)
Q Consensus 359 ~~~ 361 (771)
+..
T Consensus 260 ~~~ 262 (814)
T 3mkq_A 260 YKV 262 (814)
T ss_dssp CSE
T ss_pred CcE
Confidence 553
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.3e-11 Score=128.00 Aligned_cols=267 Identities=12% Similarity=0.076 Sum_probs=167.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|+|+|+.|+..+..+ .+.+| ..++..+...... +. +.+++|+|||+.|+..+.+...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~---~~------V~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT---DS------VQDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS---SC------EEEEEECTTSSEEEEEETTSCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccC---Cc------EEEEEEcCCCCEEEEEeCCCeE
Confidence 4688899999999988776543 45556 3444444333211 11 2689999999999888877654
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+ .|+............+........|.++....+++..+..|.+||+.++...... ......+..+.|+|||+.
T Consensus 175 ~--iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~--- 248 (410)
T 1vyh_C 175 K--LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 248 (410)
T ss_dssp C--EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred E--EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCE---
Confidence 4 4443222222222333344445678888666677777899999999988754431 233446778899999996
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC--------
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD-------- 327 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD-------- 327 (771)
|+..+ .+..|.++|+ .+++ ...+..+...+....|+|+
T Consensus 249 -l~s~s---------------~D~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 249 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEc---------------CCCeEEEEEC-----------------CCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 66655 2336888887 4444 3456666677888999997
Q ss_pred ------------CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 328 ------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 328 ------------G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
|..|+..+.+ ..|.+||+.++.......+ +...+..++
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D-----------~~i~iwd~~~~~~~~~~~~-------------------h~~~v~~v~ 345 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLMTLVG-------------------HDNWVRGVL 345 (410)
T ss_dssp CCSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEEEEEC-------------------CSSCEEEEE
T ss_pred hccccccccCCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEEC-------------------CCCcEEEEE
Confidence 5556555543 3588999877653211000 011245678
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCc-EEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
|+|+|+.| ++...++...+| |+.+++ +..+......+....|++++..|+...
T Consensus 346 ~~~~g~~l-~s~s~D~~i~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 346 FHSGGKFI-LSCADDKTLRVW--DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp ECSSSSCE-EEEETTTEEEEE--CCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EcCCCCEE-EEEeCCCeEEEE--ECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 99999866 455556655555 666665 344444444456667888887665443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-10 Score=123.36 Aligned_cols=265 Identities=11% Similarity=0.097 Sum_probs=154.5
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP 142 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 142 (771)
++.+...+.|.+|++..... ...++ +....+.+...+||| ||++|+..+.++ .+.+| ..+...+.+...
T Consensus 135 lasGs~dg~i~lWd~~~~~~-~~~~~---~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~ 205 (435)
T 4e54_B 135 VAVGSKGGDIMLWNFGIKDK-PTFIK---GIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGNILRVFASS 205 (435)
T ss_dssp EEEEETTSCEEEECSSCCSC-CEEEC---CCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSCEEEEEECC
T ss_pred EEEEeCCCEEEEEECCCCCc-eeEEE---ccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCCceeEEecc
Confidence 44555667888888754432 11111 111235688999999 677776654432 45666 333333333222
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE
Q 004141 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV 222 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v 222 (771)
.... .++.++.|+|||+.|+.... ...|++
T Consensus 206 ~~~~------~~~~~~~~~~~~~~l~~g~~--------------------------------------------dg~i~~ 235 (435)
T 4e54_B 206 DTIN------IWFCSLDVSASSRMVVTGDN--------------------------------------------VGNVIL 235 (435)
T ss_dssp SSCS------CCCCCEEEETTTTEEEEECS--------------------------------------------SSBEEE
T ss_pred CCCC------ccEEEEEECCCCCEEEEEeC--------------------------------------------CCcEee
Confidence 2111 12357899999998887532 357899
Q ss_pred EEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 223 ININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 223 ~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
||+.+..+..+ ......+..+.|+|+++. +++++. .+..|.++|+
T Consensus 236 wd~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~~~s~s--------------~d~~v~iwd~--------------- 280 (435)
T 4e54_B 236 LNMDGKELWNL--RMHKKKVTHVALNPCCDW----FLATAS--------------VDQTVKIWDL--------------- 280 (435)
T ss_dssp EESSSCBCCCS--BCCSSCEEEEEECTTCSS----EEEEEE--------------TTSBCCEEET---------------
T ss_pred eccCcceeEEE--ecccceEEeeeecCCCce----EEEEec--------------CcceeeEEec---------------
Confidence 99988776666 344556889999999998 776652 2235677776
Q ss_pred CCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc
Q 004141 303 SSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 378 (771)
Q Consensus 303 ~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 378 (771)
...+ ......+...+.+..|||||++|+..+.+. .|.+||+.++........ ..
T Consensus 281 --~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----------~i~iwd~~~~~~~~~~~~---------~~ 338 (435)
T 4e54_B 281 --RQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----------EIRVYSASQWDCPLGLIP---------HP 338 (435)
T ss_dssp --TTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----------CEEEEESSSSSSEEEECC---------CC
T ss_pred --ccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-----------EEEEEECCCCccceEEec---------cc
Confidence 2222 122234556688899999999998777653 488899877654211000 00
Q ss_pred CCCCCcccccCCCCCCccccCCCEEEEEeeeCC---------eeEEEEEECCCCcEEEec-CCC-CC-ceeeEEeecCCE
Q 004141 379 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS---------SQVIISVNVSSGELLRIT-PAE-SN-FSWSLLTLDGDN 446 (771)
Q Consensus 379 ~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~---------~~~l~~~d~~tg~~~~l~-~~~-~~-~~~~~~s~dg~~ 446 (771)
...+. ........|++++..++.....++ ...|..+|..+|+..... ... .. .+...|+|+|+.
T Consensus 339 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~ 414 (435)
T 4e54_B 339 -HRHFQ---HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDT 414 (435)
T ss_dssp -CCCCS---SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSC
T ss_pred -ccccc---cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCE
Confidence 00000 001234567888776665543221 124666788888866443 222 22 233468999987
Q ss_pred EEE
Q 004141 447 IIA 449 (771)
Q Consensus 447 l~~ 449 (771)
|+.
T Consensus 415 las 417 (435)
T 4e54_B 415 LAS 417 (435)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=127.24 Aligned_cols=178 Identities=8% Similarity=0.090 Sum_probs=101.6
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEcc-CCceeecc------CCCCCCccceEEEecCC-CCCccEEEEEeecCc
Q 004141 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVK------GIPKSLSVGQVVWAPLN-EGLHQYLVFVGWSSE 266 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~~l~------~~~~~~~~~~~~wspDg-~~~~~~l~~~~~~~~ 266 (771)
+........|.++....+++ .+..|.+||+. +++...+. -......+..++|+||| +. |+..+
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~----l~s~~---- 246 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNT----FVYSS---- 246 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTE----EEEEE----
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcE----EEEEe----
Confidence 34444566788885545555 78899999998 34333310 02234467899999999 54 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCc------------cccceeecCCCC
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESIS------------SAFFPRFSPDGK 329 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~------------~~~~p~~SpDG~ 329 (771)
.+..|.++|+ .+++ ...+..+.. .+....|||||+
T Consensus 247 -----------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 298 (447)
T 3dw8_B 247 -----------SKGTIRLCDM-----------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR 298 (447)
T ss_dssp -----------TTSCEEEEET-----------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS
T ss_pred -----------CCCeEEEEEC-----------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC
Confidence 2336888887 4443 244544443 688999999999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecc-cccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVV-QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~-~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
.|+..+. ..|.+||+.+ +...........+...+ ....... + .....++|+|||+.| ++.
T Consensus 299 ~l~~~~~------------~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---i--~~~~~~~~s~~~~~l-~s~ 360 (447)
T 3dw8_B 299 YMMTRDY------------LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC---I--FDKFECCWNGSDSVV-MTG 360 (447)
T ss_dssp EEEEEES------------SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG---G--GCCCCEEECTTSSEE-EEE
T ss_pred EEEEeeC------------CeEEEEeCCCCccccceeeccccccccccccccccc---c--ccceEEEECCCCCEE-EEe
Confidence 9886554 2488899876 43322111110000000 0000000 0 012347899999977 455
Q ss_pred eeCCeeEEEEEECCCCcEEEec
Q 004141 408 IWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
..++. |+.+|+.+++...+.
T Consensus 361 s~dg~--v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 361 SYNNF--FRMFDRNTKRDITLE 380 (447)
T ss_dssp CSTTE--EEEEETTTCCEEEEE
T ss_pred ccCCE--EEEEEcCCCcceeee
Confidence 54554 555588888876654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-11 Score=127.92 Aligned_cols=289 Identities=14% Similarity=0.102 Sum_probs=169.6
Q ss_pred ccceEEEeCCCCC-eEEEEecCCCCCCeEEEEe---cCCc------ceEEEecCCccccccc-CCCcccceeecCCCCeE
Q 004141 99 TGASAVVPSPSGS-KLLVVRNPENESPIQFELW---SQSQ------LEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~g~~~-~~~~~~~~~wSpDg~~l 167 (771)
..+...+|||||+ .||..... +.-.+|.+. ..+. ...........+.... ..+.+.+++|||||+.|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKN--SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETB--TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCC--ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 3578899999999 88876543 333444441 1122 1122221111110000 01134799999999999
Q ss_pred EEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCc------
Q 004141 168 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS------ 241 (771)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~------ 241 (771)
+....+.... .|+ ...........+........|.++....+++.....|.+||+.+++..... ......
T Consensus 124 ~~~~~dg~i~--i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELR--LWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEE--EEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------
T ss_pred EEEeCCCeEE--EEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceee
Confidence 9887665322 232 111111112223334445678888666666777889999999888765441 111112
Q ss_pred ---------cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee
Q 004141 242 ---------VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN 311 (771)
Q Consensus 242 ---------~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 311 (771)
+..+.|+|++. ++..+ ....|+++|+ .+++ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~g~i~~~d~-----------------~~~~~~~~ 242 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDK-----FVIPG---------------PKGAIFVYQI-----------------TEKTPTGK 242 (425)
T ss_dssp ------CCCBSCCEEEETTE-----EEEEC---------------GGGCEEEEET-----------------TCSSCSEE
T ss_pred ccccCCcceeeEEEEcCCCE-----EEEEc---------------CCCeEEEEEc-----------------CCCceeee
Confidence 67789999864 44443 2347889998 4443 445
Q ss_pred cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCC
Q 004141 312 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 391 (771)
Q Consensus 312 lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~ 391 (771)
+..+...+....|+|||+.|+..+.+. .|.+||+.+++........ ...+
T Consensus 243 ~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~-------------------~~~i 292 (425)
T 1r5m_A 243 LIGHHGPISVLEFNDTNKLLLSASDDG-----------TLRIWHGGNGNSQNCFYGH-------------------SQSI 292 (425)
T ss_dssp ECCCSSCEEEEEEETTTTEEEEEETTS-----------CEEEECSSSBSCSEEECCC-------------------SSCE
T ss_pred eccCCCceEEEEECCCCCEEEEEcCCC-----------EEEEEECCCCccceEecCC-------------------CccE
Confidence 556667788999999999888776542 4888988775542211100 1124
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
..++|+||+ ++++...++ .|..+|+.+++...... ....+....|+++++.|+....+ ..+.+.++.+.
T Consensus 293 ~~~~~~~~~--~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~~ 362 (425)
T 1r5m_A 293 VSASWVGDD--KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDLKKL 362 (425)
T ss_dssp EEEEEETTT--EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEECHHH
T ss_pred EEEEECCCC--EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Confidence 567899999 445554444 45666887887665443 34456667889999877765532 35777776543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-12 Score=132.61 Aligned_cols=234 Identities=10% Similarity=0.057 Sum_probs=135.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+...+|||||++||..... +.-.+|.+.. +....+..+. ...+ .+..+.|+|||++|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~~-~~~~~~~~~~-~h~~------~v~~~~~s~~~~~l~s~s~d------ 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT--NQVELYEQDG-NGWKHARTFS-DHDK------IVTCVDWAPKSNRIVTCSQD------ 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS--SCBCEEEEET-TEEEECCCBC-CCSS------CEEEEEECTTTCCEEEEETT------
T ss_pred cEEEEEECCCCCEEEEecCC--CEEEEEEccC-CceEEEEEEe-cCCc------eEEEEEEeCCCCEEEEEeCC------
Confidence 47788999999998765432 3344444432 2111111111 1111 23689999999999886532
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCc
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
..|.+||+.+++ ...+ ......+..+.|+|||+.
T Consensus 77 --------------------------------------~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-- 114 (377)
T 3dwl_C 77 --------------------------------------RNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDK-- 114 (377)
T ss_dssp --------------------------------------SSEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSC--
T ss_pred --------------------------------------CeEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCE--
Confidence 568899988876 3344 345557889999999998
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceecCC-CCccccceeecCCCCE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTE-SISSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~-~~~~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ .+++ ...+.. +...+....|+|||+.
T Consensus 115 --l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 115 --FAVGS---------------GARVISVCYF-----------------EQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --CEEEE---------------SSSCEEECCC----------------------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------cCCeEEEEEE-----------------CCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 88776 2336777777 4443 455665 6777899999999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccc--------eeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
|+..+.+. .|.+||+..++....... .......+ .+...+..++|+|||+.
T Consensus 161 l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 161 LAAGCADR-----------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----------PSGGWVHAVGFSPSGNA 219 (377)
T ss_dssp EEEEESSS-----------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----------CCSSSEEEEEECTTSSC
T ss_pred EEEEeCCC-----------EEEEEEEEecccCCCccccccccccchhhhhhcc----------cCCceEEEEEECCCCCE
Confidence 98877653 478888765432111000 00111111 01123457789999996
Q ss_pred EEEEeeeCCeeEEEEEECCCCcE-----EEecCCCCCceeeEEeecCCEEEE
Q 004141 403 MLLSSIWGSSQVIISVNVSSGEL-----LRITPAESNFSWSLLTLDGDNIIA 449 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~-----~~l~~~~~~~~~~~~s~dg~~l~~ 449 (771)
|+ +...++...|| |+.+++. ..+......+....|+++++.|+.
T Consensus 220 l~-~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 268 (377)
T 3dwl_C 220 LA-YAGHDSSVTIA--YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA 268 (377)
T ss_dssp EE-EEETTTEEC-C--EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE
T ss_pred EE-EEeCCCcEEEE--ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE
Confidence 65 44455555555 5556653 334444444566789999876543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=150.63 Aligned_cols=272 Identities=11% Similarity=-0.010 Sum_probs=165.1
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.+...+|||+|+.+++....+ . +...+ ..+....... ...+ .+.+++|||||+.|+..+.+....
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g--~--i~i~d~~~~~~~~~~~---~h~~------~v~~l~~s~dg~~l~s~~~dg~i~- 1028 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDG--A--IKIIELPNNRVFSSGV---GHKK------AVRHIQFTADGKTLISSSEDSVIQ- 1028 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTS--C--CEEEETTTTSCEEECC---CCSS------CCCCEEECSSSSCEEEECSSSBEE-
T ss_pred cEEEEEEcCCCCEEEEEcCCC--C--EEEEEcCCCceeeecc---cCCC------ceEEEEECCCCCEEEEEcCCCEEE-
Confidence 467789999999998876543 2 33223 2333222221 1111 226899999999999887665332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.|+....... ....+......+.|.++ +..+++.....|.+||+.+++..... ......+..++|||||+. |
T Consensus 1029 -vwd~~~~~~~-~~~~~~~~v~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~----l 1100 (1249)
T 3sfz_A 1029 -VWNWQTGDYV-FLQAHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATK----F 1100 (1249)
T ss_dssp -EEETTTTEEE-CCBCCSSCEEEEEECSS-SEEEEEESSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSS----C
T ss_pred -EEECCCCceE-EEecCCCcEEEEEEcCC-CcEEEEECCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCE----E
Confidence 2332111111 11122222334456665 45566667789999999988754431 234456788999999998 8
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+..+ .+..|.++|+ .++ ....+..+...+...+|||||+.|+..+.+
T Consensus 1101 ~s~s---------------~d~~v~iwd~-----------------~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~d 1148 (1249)
T 3sfz_A 1101 SSTS---------------ADKTAKIWSF-----------------DLLSPLHELKGHNGCVRCSAFSLDGILLATGDDN 1148 (1249)
T ss_dssp EEEC---------------CSSCCCEECS-----------------SSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCcceeeeeccCCCcEEEEEECCCCCEEEEEeCC
Confidence 8766 2236777787 433 445666677778999999999999887755
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
. .|.+||+.+++.......... ..... .+...+..++|||||+.|+... + .+..
T Consensus 1149 g-----------~i~vwd~~~~~~~~~~~~~~~---------~~~~~-~~~~~v~~l~fs~dg~~l~s~~---g--~v~v 1202 (1249)
T 3sfz_A 1149 G-----------EIRIWNVSDGQLLHSCAPISV---------EEGTA-THGGWVTDVCFSPDSKTLVSAG---G--YLKW 1202 (1249)
T ss_dssp S-----------CCCEEESSSSCCCCCCCCCC-----------------CCSCCCEEEECTTSSCEEEES---S--SEEE
T ss_pred C-----------EEEEEECCCCceEEEeccccc---------ccccc-ccCceEEEEEECCCCCEEEECC---C--eEEE
Confidence 3 488899888765332111000 00000 0122466789999999776442 3 4566
Q ss_pred EECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004141 418 VNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 418 ~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~ 451 (771)
+|+.+|+...... ....+....|++|++.++...
T Consensus 1203 wd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~ 1237 (1249)
T 3sfz_A 1203 WNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVD 1237 (1249)
T ss_dssp BCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEEC
T ss_pred EECCCCceeeeeeccCCcccEEEECCCCCEEEEec
Confidence 6877877543332 333455678999998777643
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=121.92 Aligned_cols=274 Identities=14% Similarity=0.111 Sum_probs=164.1
Q ss_pred EEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcc
Q 004141 58 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQL 135 (771)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~ 135 (771)
+.++...+......+.+++|++... +..++.... ....+...+|||||+.|+.....+ .+.+| ..++.
T Consensus 99 ~~~s~~~l~~~~~d~~v~lw~~~~~--~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~ 168 (401)
T 4aez_A 99 LDWSNLNVVAVALERNVYVWNADSG--SVSALAETD---ESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTK 168 (401)
T ss_dssp EEECTTSEEEEEETTEEEEEETTTC--CEEEEEECC---TTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCE
T ss_pred EeecCCCEEEEECCCeEEEeeCCCC--cEeEeeecC---CCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeE
Confidence 3333333444445567888776433 333222221 124588999999999998876543 34455 23333
Q ss_pred eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCc
Q 004141 136 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK 215 (771)
Q Consensus 136 ~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~ 215 (771)
.+.... ..+ .+..++| +++.|+..+.
T Consensus 169 ~~~~~~---~~~------~v~~~~~--~~~~l~~~~~------------------------------------------- 194 (401)
T 4aez_A 169 LRTMAG---HQA------RVGCLSW--NRHVLSSGSR------------------------------------------- 194 (401)
T ss_dssp EEEECC---CSS------CEEEEEE--ETTEEEEEET-------------------------------------------
T ss_pred EEEecC---CCC------ceEEEEE--CCCEEEEEcC-------------------------------------------
Confidence 333221 111 1257778 5666666432
Q ss_pred cCceEEEEEccCC-c-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 216 RQPSLFVININSG-E-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 216 ~~~~l~v~d~~~~-~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
...|.+||+... . ...+ ......+..+.|+|||+. |+..+ .+..|.++|+
T Consensus 195 -dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~------ 246 (401)
T 4aez_A 195 -SGAIHHHDVRIANHQIGTL--QGHSSEVCGLAWRSDGLQ----LASGG---------------NDNVVQIWDA------ 246 (401)
T ss_dssp -TSEEEEEETTSSSCEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET------
T ss_pred -CCCEEEEecccCcceeeEE--cCCCCCeeEEEEcCCCCE----EEEEe---------------CCCeEEEccC------
Confidence 368899998743 3 3334 344557888999999987 77665 2347888998
Q ss_pred hhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
.+++ ...+..+...+....|+|+|+.++...... ....|.+||+.+++......
T Consensus 247 -----------~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs--------~d~~i~i~d~~~~~~~~~~~------ 301 (401)
T 4aez_A 247 -----------RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT--------MDKQIHFWNAATGARVNTVD------ 301 (401)
T ss_dssp -----------TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT--------TTCEEEEEETTTCCEEEEEE------
T ss_pred -----------CCCCccEEecCCcceEEEEEECCCCCCEEEEecCC--------CCCEEEEEECCCCCEEEEEe------
Confidence 4444 445666777789999999998887765311 12469999988765421110
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEee-eCCeeEEEEEECCCCcEEEe---cCCCCCceeeEEeecCCEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~-~~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s~dg~~l~ 448 (771)
. ...+..++|+||++.|+.... .++...+| ++.+++...+ ......+....|+++++.|+
T Consensus 302 ----~----------~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~--~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~ 365 (401)
T 4aez_A 302 ----A----------GSQVTSLIWSPHSKEIMSTHGFPDNNLSIW--SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILS 365 (401)
T ss_dssp ----C----------SSCEEEEEECSSSSEEEEEECTTTCEEEEE--EEETTEEEEEEEEECCSSCCCEEEECTTSSEEE
T ss_pred ----C----------CCcEEEEEECCCCCeEEEEeecCCCcEEEE--ecCCccceeEEEecCCCCCEEEEEECCCCCEEE
Confidence 0 012457789999997766543 45555555 5546554443 33444556678999999776
Q ss_pred EEEeCCCCCCeEEEEEeccc
Q 004141 449 AVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 449 ~~~~~~~~p~~l~~~~~~~~ 468 (771)
.... -..|.+.++.++
T Consensus 366 s~~~----dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAAS----DENLKFWRVYDG 381 (401)
T ss_dssp EECT----TSEEEEEECCC-
T ss_pred EEeC----CCcEEEEECCCC
Confidence 5442 245777666544
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=124.41 Aligned_cols=211 Identities=13% Similarity=0.061 Sum_probs=113.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.+..+.||++||++.+ ...|...+. | ..+|.|+++|++|. +.+.. . ...++++.+.+..+++.. .
T Consensus 18 ~~~~~~lv~lhg~~~~--~~~~~~~~~-l-~~~~~v~~~d~~G~---~~~~~---~----~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGS--AFSYASLPR-L-KSDTAVVGLNCPYA---RDPEN---M----NCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TTSSEEEEEECCTTCC--GGGGTTSCC-C-SSSEEEEEEECTTT---TCGGG---C----CCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHh-c-CCCCEEEEEECCCC---CCCCC---C----CCCHHHHHHHHHHHHHHh-C
Confidence 3456889999997765 334555555 5 67899999999993 22211 1 123444443333322221 1
Q ss_pred CCCeEEEEEcChhHHHHHHHHh---hCCCceeEEEecCCccchhhhhcCCCCCc--chhhhhccCCCC----c--cCCCC
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCNLALMVGTTDIPD--WCYVESYGSKGK----D--SFTES 682 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~---~~p~~~~~~v~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~--~~~~~ 682 (771)
...++.|+||||||.+++.++. .+++.++++|+.++...... ...+. ..+......... . .....
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAPIPQAM----EQLPRAFYEHCNSIGLFATQPGASPDGSTEP 158 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCSSCCC----CCCCHHHHHHHHHTTTTTTSSSSCSSSCSCC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCCCCCcc----cccCHHHHHHHHHHHHhCCCccccccCCHHH
Confidence 2358999999999999999987 67888999888876432100 00000 000011100000 0 00000
Q ss_pred CCh------hhHHHHhhcCcccccCCCCCcEE-EEeeCC---CCccC--------------cHHHHHHHHHHHhCCCCEE
Q 004141 683 PSV------EDLTRFHSKSPISHISKVKTPTI-FLLGAQ---DLRVP--------------VSNGLQYARALREKGVETK 738 (771)
Q Consensus 683 ~~~------~~~~~~~~~sp~~~~~~i~~P~l-ii~G~~---D~~vp--------------~~~~~~~~~~l~~~g~~~~ 738 (771)
... .+........+ ....++++|++ +++|++ |..++ ......+.+.+. +.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~P~~lii~G~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~ 235 (265)
T 3ils_A 159 PSYLIPHFTAVVDVMLDYKL-APLHARRMPKVGIVWAADTVMDERDAPKMKGMHFMIQKRTEFGPDGWDTIMP--GASFD 235 (265)
T ss_dssp CTTHHHHHHHHHHHTTTCCC-CCCCCSSCCEEEEEEEEECSSCTTTSCCCSSCCTTTSCCCCCSCTTHHHHST--TCCEE
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCccCCCCeEEEEEccCCCCccccCccccCcchhhccccccCcchHHHhCC--cccee
Confidence 000 00111111111 12346889977 999999 99883 333333333221 13689
Q ss_pred EEEeCCCCccCCC-CCChHHHHHHHHHHH
Q 004141 739 VIVFPNDVHGIER-PQSDFESFLNIGLWF 766 (771)
Q Consensus 739 ~~~~~~~~H~~~~-~~~~~~~~~~i~~fl 766 (771)
+++++++||.+.. .+....+.+.|.+||
T Consensus 236 ~~~i~gagH~~~~~~e~~~~v~~~i~~fL 264 (265)
T 3ils_A 236 IVRADGANHFTLMQKEHVSIISDLIDRVM 264 (265)
T ss_dssp EEEEEEEETTGGGSTTTTHHHHHHHHHHT
T ss_pred EEEcCCCCcceeeChhhHHHHHHHHHHHh
Confidence 9999999997662 333335555555554
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.8e-12 Score=142.99 Aligned_cols=222 Identities=14% Similarity=0.091 Sum_probs=131.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHH-HHCCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|.+ ...+|.|.+....++.|+||++|||++..... .+....... ...|++|+.+|||. .-||+........ .
T Consensus 82 ~edcl--~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~-~ 158 (522)
T 1ukc_A 82 SEDCL--FINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQN-G 158 (522)
T ss_dssp ESCCC--EEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHS-S
T ss_pred CCcCC--EEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhcccc-C
Confidence 33454 44678887544456789999999998765433 232211111 25699999999994 2223322111111 1
Q ss_pred ccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhC----CCceeEEEecCCccchhhhhcCCCCCc
Q 004141 592 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPD 664 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~p~~~~~~~~~~~~~~~ 664 (771)
.+...+.|+.++++|+.++. ..|++||.|+|+|.||.++..++... +.+|+++|+.+|...... ......
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~---~~~~~~ 235 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQR---TVSEME 235 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCC---CSGGGH
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcC---CHHHHH
Confidence 12345889999999998752 36999999999999999888776643 568999999998753211 000000
Q ss_pred c---hhhhhccCCCCccCCCCCChhhHHHHhhcCcccc---------cCCCCCc--EEEEeeCCCCccCcHHHHHHHHHH
Q 004141 665 W---CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---------ISKVKTP--TIFLLGAQDLRVPVSNGLQYARAL 730 (771)
Q Consensus 665 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---------~~~i~~P--~lii~G~~D~~vp~~~~~~~~~~l 730 (771)
+ .+....+.. ...+..+.++..++... ......| .+..+...|..+.+++..++.+.-
T Consensus 236 ~~~~~~~~~~gc~--------~~~~~~~~Lr~~~~~~l~~a~~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g 307 (522)
T 1ukc_A 236 FQFERFVNDTGCS--------SARDSLECLREQDIATIQKGNTGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAG 307 (522)
T ss_dssp HHHHHHHHHTTCT--------TCSSHHHHHHHSCHHHHHHHSSCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHT
T ss_pred HHHHHHHHHcCCC--------CHHHHHHHHHcCCHHHHHHHHHhccccccccCcccccccccccCCcccCCCHHHHHhcC
Confidence 1 111222221 00112222222222111 1112233 455667778777777777777666
Q ss_pred HhCCCCEEEEEeCCCCccCC
Q 004141 731 REKGVETKVIVFPNDVHGIE 750 (771)
Q Consensus 731 ~~~g~~~~~~~~~~~~H~~~ 750 (771)
+..++++-+-...+++|.+.
T Consensus 308 ~~~~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 308 NFIKVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp CSCCCCEEEEEETBGGGGTS
T ss_pred CCCCCCEEEEeecchhHHhh
Confidence 55667777777888899775
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=122.01 Aligned_cols=248 Identities=11% Similarity=0.072 Sum_probs=137.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...+|||+|+.++..+... ...+|+ .++..+.... ... +.+++|||||+.|+..+.+..
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~h~~~----------v~~v~~sp~~~~l~s~~~d~~ 141 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDK-----TLRLWDLRTGTTYKRFVGHQSE----------VYSVAFSPDNRQILSAGAERE 141 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTS-----EEEEEETTSSCEEEEEECCCSC----------EEEEEECSSTTEEEEEETTSC
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcCCCCc----------EEEEEECCCCCEEEEEcCCCE
Confidence 4578899999999988765543 566673 3333322221 222 268999999999998876654
Q ss_pred CCCCCccCCCCCC--CCCCccCCCCCCcccccCCc----------CcccCCccCceEEEEEccCCceeeccCCCCCCccc
Q 004141 176 PSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEEDW----------GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 243 (771)
Q Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~----------g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~ 243 (771)
.+ .|+...... ......+..+.....|.++. ...+++.....|.+||........+ ......+.
T Consensus 142 i~--~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~h~~~v~ 217 (343)
T 2xzm_R 142 IK--LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF--KAHESNVN 217 (343)
T ss_dssp EE--EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE--ECCSSCEE
T ss_pred EE--EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE--cCccccce
Confidence 33 333211000 00111222333344455543 1233445567899999654444444 33445688
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCcccccee
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 323 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~ 323 (771)
.++|+|||+. |+..+ .+..|.++|+. ..............+...+
T Consensus 218 ~~~~s~~g~~----l~sgs---------------~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~v~ 262 (343)
T 2xzm_R 218 HLSISPNGKY----IATGG---------------KDKKLLIWDIL----------------NLTYPQREFDAGSTINQIA 262 (343)
T ss_dssp EEEECTTSSE----EEEEE---------------TTCEEEEEESS----------------CCSSCSEEEECSSCEEEEE
T ss_pred EEEECCCCCE----EEEEc---------------CCCeEEEEECC----------------CCcccceeecCCCcEEEEE
Confidence 8999999997 77665 33468888861 1222222222334578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
|||||+.|+. +.+ ..|.+||+.++....+..-. ...+... ....+ ....+..++|+|||+.|
T Consensus 263 ~sp~~~~la~-~~d-----------~~v~iw~~~~~~~~~~~~~~--~~~~~~~---~~~~~-~~~~v~~~~~sp~g~~l 324 (343)
T 2xzm_R 263 FNPKLQWVAV-GTD-----------QGVKIFNLMTQSKAPVCTIE--AEPITKA---EGQKG-KNPQCTSLAWNALGKKL 324 (343)
T ss_dssp ECSSSCEEEE-EES-----------SCEEEEESSSCCSCSEEECC--CCSGGGB---TTBCC-SCCCEEEEEECSSSCCE
T ss_pred ECCCCCEEEE-ECC-----------CCEEEEEeCCCCCCceEEee--cCcchhh---hhhcC-CCCceEEEEECCCCCeE
Confidence 9999987653 333 23788888776543210000 0000000 00000 11124567899999966
Q ss_pred EEEeeeCCeeEEEEEE
Q 004141 404 LLSSIWGSSQVIISVN 419 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d 419 (771)
++...++...+|.++
T Consensus 325 -~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 325 -FAGFTDGVIRTFSFE 339 (343)
T ss_dssp -EEEETTSEEEEEEEE
T ss_pred -EEecCCceEEEEEEE
Confidence 455567777777554
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=129.05 Aligned_cols=215 Identities=14% Similarity=0.098 Sum_probs=124.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccch
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~ 597 (771)
.+...++.|.... .+..+.||++||.+.+. .. |. .....|+++||.|+.+|+|| +|.+. .....
T Consensus 15 ~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~--~~~~~~~l~~~L~~~G~~v~~~d~~g---~g~~~--------~~~~~ 80 (317)
T 1tca_A 15 VLDAGLTCQGASP-SSVSKPILLVPGTGTTG--PQSFDSNWIPLSTQLGYTPCWISPPP---FMLND--------TQVNT 80 (317)
T ss_dssp HHHHTEEETTBCT-TSCSSEEEEECCTTCCH--HHHHTTTHHHHHHTTTCEEEEECCTT---TTCSC--------HHHHH
T ss_pred HHhheeeCCCCCC-CCCCCeEEEECCCCCCc--chhhHHHHHHHHHhCCCEEEEECCCC---CCCCc--------HHHHH
Confidence 3444567776543 23446799999976542 22 55 67788888999999999998 33221 01235
Q ss_pred hhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 598 ~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
+++.+.++++.+.. +.+++.|+||||||.++..++..++ ++++++|+.+|.......... ...+...
T Consensus 81 ~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~g~~~~~~--------~~~~~~~ 150 (317)
T 1tca_A 81 EYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKGTVLAGP--------LDALAVS 150 (317)
T ss_dssp HHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTCBGGGHH--------HHHTTCB
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCCCCcchhh--------hhhhhhc
Confidence 67778888887763 3478999999999999998888765 789999999886532211100 0000000
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHH--HHHHHHHHHhCCCCEEEEEe-------CCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN--GLQYARALREKGVETKVIVF-------PND 745 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~--~~~~~~~l~~~g~~~~~~~~-------~~~ 745 (771)
................+.... .....+|+++++|+.|.+|++.. +......+.. .+.+.+ ++.
T Consensus 151 ~~~~~~~~~~s~f~~~L~~~~----~~~~~vp~~~i~g~~D~iV~p~~~~g~~~~~~l~~----a~~~~~~~~~~~~~~~ 222 (317)
T 1tca_A 151 APSVWQQTTGSALTTALRNAG----GLTQIVPTTNLYSATDEIVQPQVSNSPLDSSYLFN----GKNVQAQAVCGPLFVI 222 (317)
T ss_dssp CHHHHHTBTTCHHHHHHHHTT----TTBCSSCEEEEECTTCSSSCCCCSSSTTSTTCCBT----SEEEEHHHHHCTTCCC
T ss_pred CchHHhhCcCcHHHHHHHhcC----CCCCCCCEEEEEeCCCCeECCccccccchhhhccC----CccEEeeeccCCCCcc
Confidence 000000000001111111100 01236899999999999998765 2111111211 122222 577
Q ss_pred CccCCCCCChHHHHHHHHHHHHH
Q 004141 746 VHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+|.... .+ ...+..+++||+.
T Consensus 223 gH~~~l-~~-p~~~~~v~~~L~~ 243 (317)
T 1tca_A 223 DHAGSL-TS-QFSYVVGRSALRS 243 (317)
T ss_dssp CTTHHH-HB-HHHHHHHHHHHHC
T ss_pred Cccccc-CC-HHHHHHHHHHhcC
Confidence 896432 22 3567888888874
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-12 Score=127.75 Aligned_cols=208 Identities=16% Similarity=0.161 Sum_probs=111.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
...+.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+.. ...+|+.+.++.+.+.-.+.
T Consensus 11 ~~~~~lv~lhg~g~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---hG~S~~---------~~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGY--SASFRPLHAFLQ-GECEMLAAEPPG---HGTNQT---------SAIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHH--HHHHHHHHHHHC-CSCCCEEEECCS---SCCSCC---------CTTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHhCC-CCeEEEEEeCCC---CCCCCC---------CCcCCHHHHHHHHHHHHHhh
Confidence 345679999997654 335777777774 579999999999 554421 12456666666655432222
Q ss_pred -CCeEEEEEcChhHHHHHHHHhh------CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccC-CCC-cc------C
Q 004141 615 -PSKVTVVGGSHGGFLTTHLIGQ------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS-KGK-DS------F 679 (771)
Q Consensus 615 -~~ri~l~G~S~GG~~a~~~a~~------~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~------~ 679 (771)
.+++.|+||||||.+|+.+|.+ +|+.+-......|...... ............+.. ... .. .
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAVIISAIQPPHIQRKK---VSHLPDDQFLDHIIQLGGMPAELVENKEV 152 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSEEEEEEECSCCCSCC---CSSCTTHHHHHTTCCTTCCCCTTTHHHHT
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEEEEECCCCCCCCccc---ccCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 2689999999999999999876 5665311111111110000 000000000000000 000 00 0
Q ss_pred C--CCCCh-hhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChH
Q 004141 680 T--ESPSV-EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756 (771)
Q Consensus 680 ~--~~~~~-~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~ 756 (771)
. ..+.. ........... ..+.++++|+|+++|++|..++ ..... +.+.-...+++++++ ||.....+ ..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~l~~i~~P~lvi~G~~D~~~~-~~~~~----~~~~~~~~~~~~~~~-gH~~~~e~-p~ 224 (242)
T 2k2q_B 153 MSFFLPSFRSDYRALEQFEL-YDLAQIQSPVHVFNGLDDKKCI-RDAEG----WKKWAKDITFHQFDG-GHMFLLSQ-TE 224 (242)
T ss_dssp TTTCCSCHHHHHHHHTCCCC-SCCTTCCCSEEEEEECSSCCHH-HHHHH----HHTTCCCSEEEEEEC-CCSHHHHH-CH
T ss_pred HHHHHHHHHHHHHHHHhccc-CCCCccCCCEEEEeeCCCCcCH-HHHHH----HHHHhcCCeEEEEeC-CceeEcCC-HH
Confidence 0 00110 11111111111 1256789999999999998864 22222 333222345777775 89765433 35
Q ss_pred HHHHHHHHHHHH
Q 004141 757 ESFLNIGLWFKK 768 (771)
Q Consensus 757 ~~~~~i~~fl~~ 768 (771)
.+...+.+||++
T Consensus 225 ~~~~~i~~fl~~ 236 (242)
T 2k2q_B 225 EVAERIFAILNQ 236 (242)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc
Confidence 778888899875
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-11 Score=124.05 Aligned_cols=262 Identities=12% Similarity=0.045 Sum_probs=147.5
Q ss_pred ccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecC
Q 004141 68 NKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVP 142 (771)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 142 (771)
....+.+.+|+.... .....++.. ...+...+|||||+.||..... +...+|.+.... .........
T Consensus 82 ~s~Dg~v~vWd~~~~-~~~~~~~~~-----~~~v~~~~~sp~g~~lasg~~d--~~i~v~~~~~~~~~~~~~~~~~~~~h 153 (354)
T 2pbi_B 82 SSQDGKVIVWDSFTT-NKEHAVTMP-----CTWVMACAYAPSGCAIACGGLD--NKCSVYPLTFDKNENMAAKKKSVAMH 153 (354)
T ss_dssp EETTSEEEEEETTTC-CEEEEEECS-----SSCCCEEEECTTSSEEEEESTT--SEEEEEECCCCTTCCSGGGCEEEEEC
T ss_pred EeCCCeEEEEECCCC-CcceEEecC-----CCCEEEEEECCCCCEEEEeeCC--CCEEEEEEeccccccccccceeeecc
Confidence 344567777775322 122222211 1457789999999999876443 222233322110 111222111
Q ss_pred CcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC--CcCcccCCccCceE
Q 004141 143 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETYAGKRQPSL 220 (771)
Q Consensus 143 ~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~~~~~~~~l 220 (771)
. +.+..++|+||++.|+..+.+...+ .|+............+........+.+ +....+++..+..|
T Consensus 154 ~---------~~v~~~~~~~~~~~l~t~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v 222 (354)
T 2pbi_B 154 T---------NYLSACSFTNSDMQILTASGDGTCA--LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222 (354)
T ss_dssp S---------SCEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCE
T ss_pred C---------CcEEEEEEeCCCCEEEEEeCCCcEE--EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeE
Confidence 1 1236889999999999887765433 343222211111111222222223333 32345556667899
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhh
Q 004141 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK 300 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 300 (771)
.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 223 ~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~D~~v~lwd~------------- 269 (354)
T 2pbi_B 223 MVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDA----FASGS---------------DDATCRLYDL------------- 269 (354)
T ss_dssp EEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-------------
T ss_pred EEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC-------------
Confidence 99999988765541 334556889999999987 77665 2336778887
Q ss_pred cCCCCCCcc-eecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004141 301 ESSSEDLPV-VNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 301 ~~~~~~~~~-~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
..+.. ..+... ...+....|||||+.|+..+.+ ..|.+||+.++.......+
T Consensus 270 ----~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~~~~l~~---------- 324 (354)
T 2pbi_B 270 ----RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-----------YTINVWDVLKGSRVSILFG---------- 324 (354)
T ss_dssp ----TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCSEEEEECC----------
T ss_pred ----CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-----------CcEEEEECCCCceEEEEEC----------
Confidence 33332 222222 2246788999999988766654 3588999876553211000
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+|||+.| ++.+.++...||
T Consensus 325 ---------h~~~v~~l~~spdg~~l-~sgs~D~~v~vW 353 (354)
T 2pbi_B 325 ---------HENRVSTLRVSPDGTAF-CSGSWDHTLRVW 353 (354)
T ss_dssp ---------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred ---------CCCcEEEEEECCCCCEE-EEEcCCCCEEec
Confidence 11134577899999865 556667776666
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.3e-11 Score=141.65 Aligned_cols=262 Identities=9% Similarity=0.032 Sum_probs=162.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+...+|||||++||+....+ .+.+| ..+...+.... ... +.++.|||||++|+..+.+..
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~~~----------v~~~~~s~~~~~l~~~~~dg~ 78 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVTETP----------VRAGKFIARKNWIIVGSDDFR 78 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC----------EEEEEEEGGGTEEEEEETTSE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEecCCCc----------EEEEEEeCCCCEEEEEeCCCe
Confidence 4588899999999999876543 45566 33433333332 222 269999999999999877543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeeccCCCCCCccceEEEec-CCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAP-LNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~~~~~~~~~~~~~wsp-Dg~~ 253 (771)
.. .|+............+........|+++....+++.....|.+||+.++ ...... ......+..+.|+| |++.
T Consensus 79 i~--vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~ 155 (814)
T 3mkq_A 79 IR--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST 155 (814)
T ss_dssp EE--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEE
T ss_pred EE--EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCE
Confidence 22 3332222221222233444456678888666667777789999999887 333321 33445688899999 7776
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCC-CccccceeecC--CCC
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES-ISSAFFPRFSP--DGK 329 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~-~~~~~~p~~Sp--DG~ 329 (771)
|+..+ .+..|+++|+ .++. ...+... ...+..+.|+| ||+
T Consensus 156 ----l~~~~---------------~dg~v~vwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 199 (814)
T 3mkq_A 156 ----FASGC---------------LDRTVKVWSL-----------------GQSTPNFTLTTGQERGVNYVDYYPLPDKP 199 (814)
T ss_dssp ----EEEEE---------------TTSEEEEEET-----------------TCSSCSEEEECCCTTCCCEEEECCSTTCC
T ss_pred ----EEEEe---------------CCCeEEEEEC-----------------CCCcceeEEecCCCCCEEEEEEEECCCCC
Confidence 66654 3347888887 3333 3333333 35688899999 999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~ 409 (771)
.|+..+.+ ..|.+||+.+++.... +.. +...+..++|+|||+.|+ +...
T Consensus 200 ~l~~~~~d-----------g~i~~~d~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l~-~~~~ 248 (814)
T 3mkq_A 200 YMITASDD-----------LTIKIWDYQTKSCVAT----------LEG---------HMSNVSFAVFHPTLPIII-SGSE 248 (814)
T ss_dssp EEEEECTT-----------SEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSEEE-EEET
T ss_pred EEEEEeCC-----------CEEEEEECCCCcEEEE----------EcC---------CCCCEEEEEEcCCCCEEE-EEeC
Confidence 88776654 2588899876543111 100 011245678999999554 4444
Q ss_pred CCeeEEEEEECCCCcEEEec-CCCCCceeeEEeecCCEE
Q 004141 410 GSSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~dg~~l 447 (771)
++. |..+|+.+++..... .....+....++++++.+
T Consensus 249 dg~--v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 249 DGT--LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp TSC--EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CCe--EEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 554 444588777755443 333345556778887754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.1e-10 Score=124.37 Aligned_cols=267 Identities=9% Similarity=-0.012 Sum_probs=149.5
Q ss_pred cceEEEeCC----CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCc-ccccccC-CCcccceeecCCCCeEEEEec
Q 004141 100 GASAVVPSP----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQT-VHGSVYA-DGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 100 ~~~~~~~SP----dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....+||| ||++|+...... .++.+++ ..++..+.+..... ..+..|. +.....+.+|||++.+++...
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~~~---~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAYWP---PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEES---SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CcceEEeCCCcCCCCCEEEEEEccC---CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 467889999 999987654322 2344444 34444444443110 0000000 112357889999987766432
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|+++|..+++...+..++....+..+.|+|||+
T Consensus 300 -------------------------------------------~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~ 336 (543)
T 1nir_A 300 -------------------------------------------ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR 336 (543)
T ss_dssp -------------------------------------------TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred -------------------------------------------CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence 2368999998776532211022233466789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CC--cccccee-ecCCC
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SI--SSAFFPR-FSPDG 328 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~--~~~~~p~-~SpDG 328 (771)
+ ++..+. ....|.++|+ .++++..... .. ....... ++||+
T Consensus 337 ~----l~va~~--------------~~~~v~v~D~-----------------~tg~l~~~i~~g~~ph~g~g~~~~~p~~ 381 (543)
T 1nir_A 337 Y----FMTAAN--------------NSNKVAVIDS-----------------KDRRLSALVDVGKTPHPGRGANFVHPKY 381 (543)
T ss_dssp E----EEEEEG--------------GGTEEEEEET-----------------TTTEEEEEEECSSSBCCTTCEEEEETTT
T ss_pred E----EEEEec--------------CCCeEEEEEC-----------------CCCeEEEeeccCCCCCCCCCcccCCCCC
Confidence 6 655442 2236888998 6665543222 11 1112233 47887
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
..++...... ...|.++|.++.+..... ..++..+.... .....+.++|||+.|+....
T Consensus 382 g~~~~s~~~~---------d~~V~v~d~~~~~~~~~~---~~~v~~l~~~g---------~~~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 382 GPVWSTSHLG---------DGSISLIGTDPKNHPQYA---WKKVAELQGQG---------GGSLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp EEEEEEEBSS---------SSEEEEEECCTTTCTTTB---TSEEEEEECSC---------SCCCCEECCTTCCEEEECCT
T ss_pred ccEEEeccCC---------CceEEEEEeCCCCCchhc---CeEEEEEEcCC---------CCceEEEcCCCCCcEEEecC
Confidence 7665444321 245888888773321100 11222222211 12345779999998876542
Q ss_pred eC----CeeEEEEEECCCCcEE--Ee--------cCCCCCceeeEEeecCCEEEEEEe-CCCCCCeEEEEEeccc
Q 004141 409 WG----SSQVIISVNVSSGELL--RI--------TPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 468 (771)
Q Consensus 409 ~~----~~~~l~~~d~~tg~~~--~l--------~~~~~~~~~~~~s~dg~~l~~~~~-~~~~p~~l~~~~~~~~ 468 (771)
.. ....|..+|+++++.. .| ...........|++||++++++.- .......|.++|..+.
T Consensus 441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 11 1346778898888754 32 222233456789999999998764 3345678888886554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=8.4e-11 Score=123.94 Aligned_cols=293 Identities=9% Similarity=0.014 Sum_probs=157.1
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCC---CCeEEEEecCCCCCCe
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS---GSKLLVVRNPENESPI 125 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPd---G~~la~~~~~~~~~~~ 125 (771)
.+|||..++.+.+.. ...+.+.+|++... +...+.... ....+...+|+|+ |+.|+.....+
T Consensus 26 ~~p~~~~l~~~~s~~-----~~d~~v~iw~~~~~--~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg----- 90 (357)
T 3i2n_A 26 WVPCSAKFVTMGNFA-----RGTGVIQLYEIQHG--DLKLLREIE---KAKPIKCGTFGATSLQQRYLATGDFGG----- 90 (357)
T ss_dssp ECTTSSEEEEEEC-------CCCEEEEEEEECSS--SEEEEEEEE---ESSCEEEEECTTCCTTTCCEEEEETTS-----
T ss_pred EcCCCceEEEecCcc-----CCCcEEEEEeCCCC--cccceeeec---ccCcEEEEEEcCCCCCCceEEEecCCC-----
Confidence 367887666554321 02467777777543 222121111 1245788999999 68887765433
Q ss_pred EEEEe--cCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCC----C
Q 004141 126 QFELW--SQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCN----S 197 (771)
Q Consensus 126 ~~~~~--~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~ 197 (771)
.+.+| ..+. ........ .+.+..-.+...++|||||+.|+..+.+.... .|+..... ......... .
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~--vwd~~~~~~~~~~~~~~~~~~~~ 165 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGH---KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK--VWDPRQKDDPVANMEPVQGENKR 165 (357)
T ss_dssp CEEEECTTSCSSCSEEECCC---SSCEEEEEEESGGGCC-CCCEEEEEETTSCEE--EECTTSCSSCSEEECCCTTSCCC
T ss_pred eEEEEeCCCCCccEEEEEec---ccceEEEeeccccccCCCccEEEEEeCCCeEE--EEeCCCCCCcceeccccCCCCCC
Confidence 34455 2222 33332211 11111101112236899999999887665432 23322211 111110000 0
Q ss_pred CCCccc----ccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec---CCCCCccEEEEEeecCcceee
Q 004141 198 WKGQGD----WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP---LNEGLHQYLVFVGWSSETRKL 270 (771)
Q Consensus 198 ~~~~~~----~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp---Dg~~~~~~l~~~~~~~~~~~~ 270 (771)
...... |+++....+++.....|.+||+.+++.... ......+..+.|+| +++. |+..+
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~----l~~~~-------- 231 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNK----LVATS-------- 231 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCE----EEEEE--------
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCE----EEEEC--------
Confidence 111222 556655555666678999999999987666 44455788999999 8886 66654
Q ss_pred eeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-cee-----cCCCCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 271 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-----LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 271 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-----lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
.+..|+++|+ .+++ ... +..+...+....|+|||+.+++....+
T Consensus 232 -------~dg~i~i~d~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 281 (357)
T 3i2n_A 232 -------LEGKFHVFDM-----------------RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA------ 281 (357)
T ss_dssp -------STTEEEEEEE-----------------EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT------
T ss_pred -------CCCeEEEEeC-----------------cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC------
Confidence 2336777776 2222 222 225666788999999999544444332
Q ss_pred ccccccceeeecCCCCCCCCccc---------eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEK---------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
..|.+||+..+........ .......+.. +...+..++|+|||+.|+++...++...+
T Consensus 282 ----g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 282 ----GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL---------STQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp ----SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC---------CSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred ----CcEEEeecCCCcccccccCCCCccccccccceeecccc---------CCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 3578888776543211100 0001111100 11235578899999988767777777666
Q ss_pred EEE
Q 004141 416 ISV 418 (771)
Q Consensus 416 ~~~ 418 (771)
|.+
T Consensus 349 w~~ 351 (357)
T 3i2n_A 349 LIV 351 (357)
T ss_dssp EEE
T ss_pred EEC
Confidence 644
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=120.08 Aligned_cols=273 Identities=13% Similarity=0.061 Sum_probs=154.8
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|+... ..+.+.++++... .....+.. ....+...+|+|||++|+...... .+.
T Consensus 31 ~s~~~~~l~s~~---------~dg~i~iw~~~~~-~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d~-----~i~ 90 (312)
T 4ery_A 31 FSPNGEWLASSS---------ADKLIKIWGAYDG-KFEKTISG-----HKLGISDVAWSSDSNLLVSASDDK-----TLK 90 (312)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEETTTC-CEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred ECCCCCEEEEee---------CCCeEEEEeCCCc-ccchhhcc-----CCCceEEEEEcCCCCEEEEECCCC-----EEE
Confidence 356777766543 2345666665322 11122211 124578899999999998876543 556
Q ss_pred Eec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 129 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+|+ .++..+.+..... ....+.|+||++.|+..+.+...+ .|+............+........|.+
T Consensus 91 vwd~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSN---------YVFCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp EEETTTCCEEEEEECCSS---------CEEEEEECSSSSEEEEEETTSCEE--EEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred EEECCCCcEEEEEcCCCC---------CEEEEEEcCCCCEEEEEeCCCcEE--EEECCCCEEEEEecCCCCcEEEEEEcC
Confidence 663 3333333322111 125889999999998887665432 333222211111222223334566777
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 207 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
+....+++.....|.+||+.+++............+..+.|+|||+. |+..+ .+..|.++|
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd 220 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAAT---------------LDNTLKLWD 220 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE----EEEEE---------------TTTEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEEE
Confidence 76566666777899999998887543311223345677899999997 77665 234788888
Q ss_pred cccccchhhhhhhhcCCCCCCcc-eecCCCCcc--ccceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCC
Q 004141 287 VSLYKSEASELELKESSSEDLPV-VNLTESISS--AFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 362 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~--~~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 362 (771)
+ ..++. ..+..+... .....|+ ++|+.|+..+.+ ..|.+||+.+++..
T Consensus 221 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~ 272 (312)
T 4ery_A 221 Y-----------------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED-----------NLVYIWNLQTKEIV 272 (312)
T ss_dssp T-----------------TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT-----------SCEEEEETTTCCEE
T ss_pred C-----------------CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC-----------CEEEEEECCCchhh
Confidence 7 44443 334333222 2233455 567766654433 35899998876532
Q ss_pred CCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee-eCCeeEEEEE
Q 004141 363 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISV 418 (771)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~-~~~~~~l~~~ 418 (771)
....+. ...+..++|+|++..|+..+. .++...+|..
T Consensus 273 ~~~~~h-------------------~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 273 QKLQGH-------------------TDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEECCC-------------------SSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhcc-------------------CCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 111110 012346789999986654432 4566677754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-11 Score=130.61 Aligned_cols=293 Identities=15% Similarity=0.149 Sum_probs=163.9
Q ss_pred cceEEEeCCCCCeEEEEecCCC------CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEe
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN------ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 171 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~ 171 (771)
.+...+|||||+.++++....+ .....+.+| ..+...+.... ... .+.+..++|||||+.|+..+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~------~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQV------DSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCC------SSCEEEEEECSSSSCEEEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-Eec------CCceEEEEECCCCCeEEEEc
Confidence 3567899999995555542221 112233344 22221111110 011 12236999999999999887
Q ss_pred cCCCCCCCCccCCCC----CCCCCCccCCCCCCcccccCC-cCcccCCccCceEEEEEccCCc------eeecc--CCCC
Q 004141 172 EEPSPSKPTFSLGST----KGGSSDKDCNSWKGQGDWEED-WGETYAGKRQPSLFVININSGE------VQAVK--GIPK 238 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d-~g~~~~~~~~~~l~v~d~~~~~------~~~l~--~~~~ 238 (771)
.+.... .|+.... ........+........|.++ ....+++.....|++||+.+++ ..... ....
T Consensus 87 ~dg~v~--vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 87 DNGSLE--LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SSSCEE--EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred cCCeEE--EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 665432 3332221 111122234445556778887 3444555667899999998876 22110 0123
Q ss_pred CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCC--
Q 004141 239 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-- 315 (771)
Q Consensus 239 ~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-- 315 (771)
...+..+.|+||+.. +++++. .+..|.++|+ .+++. ..+...
T Consensus 165 ~~~v~~~~~~~~~~~----~l~~~~--------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 165 VDEVISLAWNQSLAH----VFASAG--------------SSNFASIWDL-----------------KAKKEVIHLSYTSP 209 (416)
T ss_dssp SCCCCEEEECSSCTT----EEEEES--------------SSSCEEEEET-----------------TTTEEEEEECCCCC
T ss_pred CCCeeEEEeCCCCCc----EEEEEc--------------CCCCEEEEEC-----------------CCCCcceEEecccc
Confidence 446789999999665 666542 2346888887 44443 334333
Q ss_pred ----CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC-CCCcc-ceeeEEecccccCCCCCcccccC
Q 004141 316 ----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 316 ----~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
...+....|+|||+.+++....+ | ....|.+||+.++.. ..... .. ..
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d----~---~~~~i~~~d~~~~~~~~~~~~~~~-------------------~~ 263 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGS----D---NDPSILIWDLRNANTPLQTLNQGH-------------------QK 263 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECC----S---SSCCCCEEETTSTTSCSBCCCSCC-------------------SS
T ss_pred ccccCCceEEEEECCCCCCEEEEEECC----C---CCceEEEEeCCCCCCCcEEeecCc-------------------cC
Confidence 45688999999986444444332 1 123689999887532 11111 10 11
Q ss_pred CCCCCcccc-CCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 390 SILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 390 ~~~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.+..++|+| |++.| ++...++. |..+|+.+++... +......+....|++++..++++.+. -..+.+.++..
T Consensus 264 ~v~~~~~s~~~~~~l-~s~~~dg~--v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~ 337 (416)
T 2pm9_A 264 GILSLDWCHQDEHLL-LSSGRDNT--VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQN 337 (416)
T ss_dssp CEEEEEECSSCSSCE-EEEESSSE--EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCC
T ss_pred ceeEEEeCCCCCCeE-EEEeCCCC--EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccC
Confidence 345678999 77655 55555555 5555777776544 44444455667899998444444432 24466666654
Q ss_pred c
Q 004141 468 K 468 (771)
Q Consensus 468 ~ 468 (771)
.
T Consensus 338 ~ 338 (416)
T 2pm9_A 338 L 338 (416)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-10 Score=118.52 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=64.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....++|||||+++++... ....++.++ .+++....+........ .......+.|||||++|++.........
T Consensus 44 ~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~~ 117 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSVPGE---VGRSMYSFAISPDGKEVYATVNPTQRLN 117 (349)
T ss_dssp SSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCSTTE---EEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred CCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEccccccc---ccccccceEECCCCCEEEEEcccccccc
Confidence 3567899999998866543 234566666 45554444443221000 0001158899999999988764311000
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~ 252 (771)
. .| ......|++||+.+++..... .......+..++|+|||+
T Consensus 118 ~-----------------------~~---------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 118 D-----------------------HY---------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp S-----------------------CE---------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred c-----------------------cc---------ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 0 00 012368999999886543220 012222466788999997
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.6e-10 Score=122.73 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=150.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCC-------cceEEE
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQS-------QLEKEF 139 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~-------~~~~~~ 139 (771)
..+.+.++++...+.....+ ..+....+.+...+|+| +++.||..+..+ .+.+| ..+ ......
T Consensus 55 ~~g~i~v~~~~~~~~~~~~~--~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~~~~ 127 (402)
T 2aq5_A 55 GGGAFLVLPLGKTGRVDKNV--PLVCGHTAPVLDIAWCPHNDNVIASGSEDC-----TVMVWEIPDGGLVLPLREPVITL 127 (402)
T ss_dssp SSCCEEEEETTCCEECCTTC--CCBCCCSSCEEEEEECTTCTTEEEEEETTS-----EEEEEECCTTCCSSCBCSCSEEE
T ss_pred CCCEEEEEECccCCCCCCCC--ceEecCCCCEEEEEeCCCCCCEEEEEeCCC-----eEEEEEccCCCCccccCCceEEe
Confidence 34567777764332111111 11112235688999999 888888765443 34455 222 122222
Q ss_pred e-cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004141 140 H-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 140 ~-~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
. .... +..+.|+|||+.+++++. .+.
T Consensus 128 ~~h~~~----------v~~~~~~p~~~~~l~s~~-------------------------------------------~dg 154 (402)
T 2aq5_A 128 EGHTKR----------VGIVAWHPTAQNVLLSAG-------------------------------------------CDN 154 (402)
T ss_dssp ECCSSC----------EEEEEECSSBTTEEEEEE-------------------------------------------TTS
T ss_pred cCCCCe----------EEEEEECcCCCCEEEEEc-------------------------------------------CCC
Confidence 2 1222 268999999954444322 225
Q ss_pred eEEEEEccCCceeeccC-CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 219 SLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.|.+||+.+++...... ......+..+.|+|||+. |+..+ .+..|.++|+
T Consensus 155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~---------- 205 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL----ICTSC---------------RDKRVRVIEP---------- 205 (402)
T ss_dssp CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC----EEEEE---------------TTSEEEEEET----------
T ss_pred EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE----EEEEe---------------cCCcEEEEeC----------
Confidence 79999999887655410 123446789999999998 88776 3347889998
Q ss_pred hhhcCCCCCCcc-eec-CCCCcc-ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 298 ELKESSSEDLPV-VNL-TESISS-AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~l-t~~~~~-~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
.+++. ..+ ..+.+. +....|+|||+.|+...... ....|.+||+.+++........
T Consensus 206 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--------~d~~i~iwd~~~~~~~~~~~~~------ 264 (402)
T 2aq5_A 206 -------RKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--------SERQVALWDTKHLEEPLSLQEL------ 264 (402)
T ss_dssp -------TTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT--------CCEEEEEEETTBCSSCSEEEEC------
T ss_pred -------CCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC--------CCceEEEEcCccccCCceEEec------
Confidence 44443 333 334333 67899999999777653211 1346999998775531110000
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc--EEEecCC--CCCceeeEEeecCCEEE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLRITPA--ESNFSWSLLTLDGDNII 448 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~--~~~l~~~--~~~~~~~~~s~dg~~l~ 448 (771)
. ....+..+.|+||++.|+++...++...+| ++.+++ +..+... ...+....|++++..++
T Consensus 265 ---~--------~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~--d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 265 ---D--------TSSGVLLPFFDPDTNIVYLCGKGDSSIRYF--EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp ---C--------CCSSCEEEEEETTTTEEEEEETTCSCEEEE--EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred ---c--------CCCceeEEEEcCCCCEEEEEEcCCCeEEEE--EecCCCcceEeecccccCCcccceEEecccccce
Confidence 0 001245678999999887776556665666 555665 5554332 23455678888887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-10 Score=118.14 Aligned_cols=252 Identities=11% Similarity=0.072 Sum_probs=143.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
.++||+.|++.. ..+.+.++++..... ....+... ...+...+|+|||+.|+..... +.-.+|
T Consensus 16 ~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~~~~~d--g~i~vw 79 (372)
T 1k8k_C 16 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEH-----NGQVTGVDWAPDSNRIVTCGTD--RNAYVW 79 (372)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECC-----SSCEEEEEEETTTTEEEEEETT--SCEEEE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCC-----CCcccEEEEeCCCCEEEEEcCC--CeEEEE
Confidence 356888887652 235677777643310 12222222 2568889999999999877643 222333
Q ss_pred EEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 128 ELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
.+ ..++........ ...+ .+..+.|+|||+.|+..+.+
T Consensus 80 d~-~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~l~~~~~d---------------------------------- 117 (372)
T 1k8k_C 80 TL-KGRTWKPTLVIL-RINR------AARCVRWAPNEKKFAVGSGS---------------------------------- 117 (372)
T ss_dssp EE-ETTEEEEEEECC-CCSS------CEEEEEECTTSSEEEEEETT----------------------------------
T ss_pred EC-CCCeeeeeEEee-cCCC------ceeEEEECCCCCEEEEEeCC----------------------------------
Confidence 33 233323332221 1111 22689999999999886432
Q ss_pred cCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 208 WGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
..|.+||+.+++ ...+. ......+..+.|+||++. |+..+ .+..|+
T Consensus 118 ----------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~ 167 (372)
T 1k8k_C 118 ----------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVL----LAAGS---------------CDFKCR 167 (372)
T ss_dssp ----------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSE----EEEEE---------------TTSCEE
T ss_pred ----------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCE----EEEEc---------------CCCCEE
Confidence 467888888776 23331 233556889999999987 77655 223677
Q ss_pred EEecccccc-hhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 284 AVRVSLYKS-EASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 284 ~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
++|+..... .......+......+ ....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 168 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----------STVCLADADKKMA 236 (372)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----------TEEEEEEGGGTTE
T ss_pred EEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----------CEEEEEECCCCce
Confidence 777410000 000000000000122 334455566678899999999988877754 2588999877653
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..... . ....+..++|+||++.| ++. .++...+|.++.
T Consensus 237 ~~~~~----------~---------~~~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 237 VATLA----------S---------ETLPLLAVTFITESSLV-AAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEE----------C---------SSCCEEEEEEEETTEEE-EEE-TTSSCEEEEEET
T ss_pred eEEEc----------c---------CCCCeEEEEEecCCCEE-EEE-eCCeEEEEEccC
Confidence 21110 0 00124567899999744 444 566777777664
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-08 Score=108.18 Aligned_cols=258 Identities=10% Similarity=0.022 Sum_probs=142.3
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 103 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+++||||+++++.... +.....+..++ ...+....+.+..... .-....-..+.|||||++|++....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~--~~~g~~p~~~~~spDG~~l~v~n~~-- 145 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR--FDVGPYSWMNANTPNNADLLFFQFA-- 145 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc--cccCCCccceEECCCCCEEEEEecC--
Confidence 89999999999765421 11223455565 3444444444331000 0000012478999999998876322
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~ 254 (771)
....|.++| +++++... ...+. .+...|+++.
T Consensus 146 ----------------------------------------~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~- 178 (373)
T 2mad_H 146 ----------------------------------------AGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPS- 178 (373)
T ss_pred ----------------------------------------CCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCc-
Confidence 125799999 98876433 22222 2456677776
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec------CCCCccccceeecCCC
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDG 328 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l------t~~~~~~~~p~~SpDG 328 (771)
.++..+ ....+..+++ .+...... .........|.+++|+
T Consensus 179 ---~~~~~~--------------~dg~~~~vd~-----------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 179 ---TFYLLC--------------AQGGLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---eEEEEc--------------CCCCEEEEEC-----------------CCcEEEEEeccccccCCcceeecceeEecC
Confidence 554432 1224555553 11111011 1111123457889999
Q ss_pred CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc-CC-CCCcccccCCCCCCccccCCCEEEEE
Q 004141 329 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-EG-DCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 329 ~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-~~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
..++|.+.. .+++++|+.++....+. . .++.... .. ...| .....+.+++|+++||+.
T Consensus 225 ~~~~~~~~~-----------~~v~vid~~~~~~~v~~-~----~~~~~~~~~~~~~~p----~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 225 GRIVWPVYS-----------GKILQADISAAGATNKA-P----IDALSGGRKADTWRP----GGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred CEEEEEcCC-----------ceEEEEeccCCcceEee-e----eeecCCcccccceec----CceEeEEECCCCCEEEEE
Confidence 998888743 26999998765432211 0 0000000 00 0011 011225689999998887
Q ss_pred eeeC-------CeeEEEEEECCCCcE-EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 407 SIWG-------SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 407 ~~~~-------~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.... ....|+.||++++++ .+|.... ......+++||+.++++.+.. ...|.++|..+.
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~ 351 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAG 351 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCC
Confidence 6432 235799999999987 4554333 345678999999666665422 246888887654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.25 E-value=7.3e-10 Score=115.13 Aligned_cols=230 Identities=10% Similarity=0.020 Sum_probs=140.8
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEecCCc-c-eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQSQ-L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
+.+...+|||++ +.|+..+.. +.-.+|.+..... . ..+..+. +..+. ...+.|+|||++|+..+.
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D--~~v~~W~~~~~~~~~~~~~~~~~-~h~~~------v~~~~~s~dg~~l~s~s~--- 85 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRD--KTLISWKLTGDDQKFGVPVRSFK-GHSHI------VQDCTLTADGAYALSASW--- 85 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETT--SEEEEEEEEEETTEEEEEEEEEE-CCSSC------EEEEEECTTSSEEEEEET---
T ss_pred ceEEEEEccCCCccEEEEecCC--ccEEEecCCCCCccccccceEEe-CCccc------EEEEEECCCCCEEEEEeC---
Confidence 457889999977 555544433 3223333331111 1 1111111 11111 268899999999888643
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCc
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+..|.+||+.+++..... ......+..+.|+|+++.
T Consensus 86 -----------------------------------------D~~v~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~-- 121 (319)
T 3frx_A 86 -----------------------------------------DKTLRLWDVATGETYQRF-VGHKSDVMSVDIDKKASM-- 121 (319)
T ss_dssp -----------------------------------------TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSCE--
T ss_pred -----------------------------------------CCEEEEEECCCCCeeEEE-ccCCCcEEEEEEcCCCCE--
Confidence 368999999988764431 334456888999999996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCC------C
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG------K 329 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG------~ 329 (771)
|+..+ .+..|.++|+ .+.....+..+...+....|+|++ .
T Consensus 122 --l~s~s---------------~D~~i~vwd~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 167 (319)
T 3frx_A 122 --IISGS---------------RDKTIKVWTI-----------------KGQCLATLLGHNDWVSQVRVVPNEKADDDSV 167 (319)
T ss_dssp --EEEEE---------------TTSCEEEEET-----------------TSCEEEEECCCSSCEEEEEECCC------CC
T ss_pred --EEEEe---------------CCCeEEEEEC-----------------CCCeEEEEeccCCcEEEEEEccCCCCCCCcc
Confidence 76655 3346788887 555666677777778888898854 4
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~ 409 (771)
.|+..+.+ ..|.+||+.+.+......+ +...+..++|+|||+.| ++...
T Consensus 168 ~l~s~~~d-----------~~i~~wd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~g~~l-~s~~~ 216 (319)
T 3frx_A 168 TIISAGND-----------KMVKAWNLNQFQIEADFIG-------------------HNSNINTLTASPDGTLI-ASAGK 216 (319)
T ss_dssp EEEEEETT-----------SCEEEEETTTTEEEEEECC-------------------CCSCEEEEEECTTSSEE-EEEET
T ss_pred EEEEEeCC-----------CEEEEEECCcchhheeecC-------------------CCCcEEEEEEcCCCCEE-EEEeC
Confidence 56655544 3588888876442110000 11134567899999855 45555
Q ss_pred CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 410 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
++...| +|+.+++..........+....|+|++..++...
T Consensus 217 dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 217 DGEIML--WNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp TCEEEE--EETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE
T ss_pred CCeEEE--EECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc
Confidence 555444 5887777554443444466678999998876654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-11 Score=121.95 Aligned_cols=233 Identities=9% Similarity=0.020 Sum_probs=140.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||..|+-. ...+.+.+|++... .....+.... ..+...+|+|||++|+..+... .+.+
T Consensus 22 sp~~~~l~s~---------~~dg~v~lWd~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~s~d~-----~i~v 81 (304)
T 2ynn_A 22 HPTEPWVLTT---------LYSGRVELWNYETQ-VEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----RIRV 81 (304)
T ss_dssp CSSSSEEEEE---------ETTSEEEEEETTTT-EEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----EEEE
T ss_pred CCCCCEEEEE---------cCCCcEEEEECCCC-ceeEEeeccC-----CcEEEEEEeCCCCEEEEECCCC-----EEEE
Confidence 4577666543 23456777776332 1222222221 4577889999999998776543 5666
Q ss_pred ec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC-CCCCCccCCCCCCcccccC
Q 004141 130 WS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 206 (771)
|+ .++......... + .+..++|+||++.|+..+.+...+ .|+..... .......+........|.+
T Consensus 82 wd~~~~~~~~~~~~h~---~------~v~~~~~~~~~~~l~sgs~D~~v~--lWd~~~~~~~~~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHP---D------YIRSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EETTTCCEEEEEECCS---S------CEEEEEECSSSSEEEEEETTSCEE--EEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred EECCCCcEEEEEeCCC---C------cEEEEEEcCCCCEEEEECCCCeEE--EEECCCCcchhhhhcccCCcEEEEEECC
Confidence 63 333332222111 1 126899999999999887766543 33321110 0111222334444566777
Q ss_pred CcC-cccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEec--CCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004141 207 DWG-ETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 207 d~g-~~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wsp--Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
+.+ ..+++..+..|.+||+..+.... +. ......+....|+| |++. |+..+ .+..|
T Consensus 151 ~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----l~s~s---------------~D~~i 210 (304)
T 2ynn_A 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPY----MITAS---------------DDLTI 210 (304)
T ss_dssp TCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCE----EEEEE---------------TTSEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCE----EEEEc---------------CCCeE
Confidence 433 45566677899999997665432 21 22334566778877 5554 55544 33478
Q ss_pred EEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 283 YAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.++|+ .+++ ...+..+...+....|+|+++.|+..+.+. .|.+||+.+++.
T Consensus 211 ~iWd~-----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-----------~i~iWd~~~~~~ 262 (304)
T 2ynn_A 211 KIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSSTYKV 262 (304)
T ss_dssp EEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTTCCE
T ss_pred EEEeC-----------------CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC-----------eEEEEECCCCce
Confidence 88898 4444 455666777788999999999888777653 488999887654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-10 Score=122.12 Aligned_cols=175 Identities=13% Similarity=0.070 Sum_probs=109.7
Q ss_pred ceEEEEEcc--CCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 218 PSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 218 ~~l~v~d~~--~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
..|.+||+. +++.... ........+..++|+|||+. |++.+ ....|+.+++
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~---------------~~g~v~~~~~------- 178 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----VIIAD---------------KFGDVYSIDI------- 178 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE----EEEEe---------------CCCcEEEEec-------
Confidence 678999988 6655444 11123346778999999997 77665 2347899997
Q ss_pred hhhhhhcCCCCCCcce-----ecCCCCccccceeecCC---CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC-c
Q 004141 295 SELELKESSSEDLPVV-----NLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L 365 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~-----~lt~~~~~~~~p~~SpD---G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~ 365 (771)
.++... .+..+...+....|||| |+.|+..+.+ ..|++||+.++..... .
T Consensus 179 ----------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 179 ----------NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----------EHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp ----------TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----------SCEEEEEESCTTCEEEEC
T ss_pred ----------CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----------CcEEEEECCCCceeeeee
Confidence 433322 44455667889999999 8888777654 2588999877654211 0
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--------------
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------- 431 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-------------- 431 (771)
.+ +...+..++|+ ||+.|+ +...++ .|..+|+.+++.......
T Consensus 238 ~~-------------------h~~~v~~~~~s-d~~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 238 FG-------------------HKHFVSSICCG-KDYLLL-SAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CC-------------------CSSCEEEEEEC-STTEEE-EEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred cC-------------------CCCceEEEEEC-CCCEEE-EEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 00 01124567899 998665 444444 456668888875443221
Q ss_pred ------------CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 432 ------------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 432 ------------~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
...+....++++++.|++.... -..|++.++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~---d~~i~iw~~ 337 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEA---TKCIIILEM 337 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETT---CSEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECC---CCeEEEEEe
Confidence 1123455778888877766532 245677666
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-10 Score=117.52 Aligned_cols=249 Identities=8% Similarity=0.058 Sum_probs=143.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||+.||+..... .+.+| ..++...+..+. ...+ .+..+.|+|||+.|+..+.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~l~~~~~---- 72 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNG------QVTGVDWAPDSNRIVTCGT---- 72 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSS------CEEEEEEETTTTEEEEEET----
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeec-CCCC------cccEEEEeCCCCEEEEEcC----
Confidence 4578899999999998764432 34444 333311222221 1111 2268999999999988643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~ 255 (771)
...|.+||+.+++..... .......+..+.|+|||+.
T Consensus 73 ----------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 110 (372)
T 1k8k_C 73 ----------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-- 110 (372)
T ss_dssp ----------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE--
T ss_pred ----------------------------------------CCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE--
Confidence 257899999888743321 1334456889999999987
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc----ceec-CCCCccccceeecCCCCE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNL-TESISSAFFPRFSPDGKF 330 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~l-t~~~~~~~~p~~SpDG~~ 330 (771)
|+..+ .+..|.++|+ ..+. ...+ ..+...+....|+|||+.
T Consensus 111 --l~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 --FAVGS---------------GSRVISICYF-----------------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp --EEEEE---------------TTSSEEEEEE-----------------ETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred --EEEEe---------------CCCEEEEEEe-----------------cCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 77665 2235666665 2332 2233 334567889999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccc--------eeeEEecccccCCCCCcccccCCCCCCccccCCCE
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--------IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 402 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~ 402 (771)
|+..+.+. .|.+||+........... .......+. + ....+..++|+||++.
T Consensus 157 l~~~~~dg-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 157 LAAGSCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S-SCGWVHGVCFSANGSR 216 (372)
T ss_dssp EEEEETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C-CSSCEEEEEECSSSSE
T ss_pred EEEEcCCC-----------CEEEEEcccccccccccccccccccchhhheEecC--------C-CCCeEEEEEECCCCCE
Confidence 88776543 478888653321100000 000111110 0 1113457789999986
Q ss_pred EEEEeeeCCeeEEEEEECCCCcEEE-ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 403 MLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
|+. ...++. |..+|+.+++... +......+....|+++++.++. . .+ ..+.+.++..
T Consensus 217 l~~-~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~--~d--~~i~i~~~~~ 274 (372)
T 1k8k_C 217 VAW-VSHDST--VCLADADKKMAVATLASETLPLLAVTFITESSLVAA-G--HD--CFPVLFTYDS 274 (372)
T ss_dssp EEE-EETTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE-E--TT--SSCEEEEEET
T ss_pred EEE-EeCCCE--EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE-E--eC--CeEEEEEccC
Confidence 654 444544 5555776776543 4444445566788998875543 3 22 2345555544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=124.43 Aligned_cols=255 Identities=11% Similarity=0.000 Sum_probs=153.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|||||++|+..+..+ ...+|+. +...+... .+ +......|+|||++|+..+.
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~~~~~----~~------~~~~~~~~~~~~~~l~~~~~------ 117 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG-----HDFLFNTIIRDGSKMLK----RA------DYTAVDTAKLQMRRFILGTT------ 117 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT-----EEEEEECCSEETTTTSC----SC------CEEEEEEECSSSCEEEEEET------
T ss_pred ccceeeeecCCeEEEEEcCC-----cEEEEEecccceeeEEe----cC------CceEEEEEecCCCEEEEEEC------
Confidence 34579999999998876543 4445522 11111111 11 11235579999999988643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|.+||+.+++..... ......+..++|+|||+. |
T Consensus 118 --------------------------------------dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l 154 (420)
T 3vl1_A 118 --------------------------------------EGDIKVLDSNFNLQREID-QAHVSEITKLKFFPSGEA----L 154 (420)
T ss_dssp --------------------------------------TSCEEEECTTSCEEEEET-TSSSSCEEEEEECTTSSE----E
T ss_pred --------------------------------------CCCEEEEeCCCcceeeec-ccccCccEEEEECCCCCE----E
Confidence 257899999988877662 244557889999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEEecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
+..+ .+..|.++|+ .++ ....+..+...+....|+|||+.|+..+.+
T Consensus 155 ~s~s---------------~d~~i~iwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 202 (420)
T 3vl1_A 155 ISSS---------------QDMQLKIWSV-----------------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202 (420)
T ss_dssp EEEE---------------TTSEEEEEET-----------------TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred EEEe---------------CCCeEEEEeC-----------------CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC
Confidence 7665 3347888998 444 456676777789999999999999877655
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccc----eeeEEecccccCC-CCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEK----IVDVIPVVQCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~-~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
. .|.+||+.+++....... ...+..+...+.. ..........+..++|+|||+.|+ +...++.
T Consensus 203 ~-----------~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~ 270 (420)
T 3vl1_A 203 G-----------TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVI-AGHVSGV 270 (420)
T ss_dssp S-----------CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEE-EEETTSC
T ss_pred C-----------cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEE-EEcCCCe
Confidence 3 488889877654221110 0000000000000 000001123456889999998664 4444554
Q ss_pred eEEEEEECCCCcEEEec-C-CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 413 QVIISVNVSSGELLRIT-P-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 413 ~~l~~~d~~tg~~~~l~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|..+|+.+++..... . ....+....|+++++.++++.+.. ..+.+.++.++
T Consensus 271 --i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~ 323 (420)
T 3vl1_A 271 --ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYEN---GMLAQWDLRSP 323 (420)
T ss_dssp --EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETT---SEEEEEETTCT
T ss_pred --EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCC---CeEEEEEcCCC
Confidence 455577777644333 2 223456678899998444444322 45777776543
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-10 Score=117.96 Aligned_cols=276 Identities=11% Similarity=0.025 Sum_probs=156.5
Q ss_pred ccceEEEe-----CC-CCCeEEEEecCCCCCCeEEEEecCCc---c-eEEEecCCcccccccCCCcccceeecCCCCeEE
Q 004141 99 TGASAVVP-----SP-SGSKLLVVRNPENESPIQFELWSQSQ---L-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIA 168 (771)
Q Consensus 99 ~~~~~~~~-----SP-dG~~la~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la 168 (771)
..+...+| +| ||+.||..+.. +.-.+|.+..... . .....+ .+..+ .+..++|+||++.|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D--~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~------~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRD--KTVMIWKLYEEEQNGYFGIPHKAL-TGHNH------FVSDLALSQENCFAI 92 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETT--SCEEEEEECSSCCSSBSEEEEEEE-CCCSS------CEEEEEECSSTTEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCC--CEEEEEECCcCCcccccccccchh-ccCCC------ceEEEEECCCCCEEE
Confidence 34677778 77 99988876553 3333333331110 1 111111 11111 226899999999998
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEE
Q 004141 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVW 247 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~w 247 (771)
..+.+...+ .|+............+........|+++....+++.....|.+||+.+.....+.. ......+..+.|
T Consensus 93 s~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 93 SSSWDKTLR--LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEETTSEEE--EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred EEcCCCcEE--EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence 877665433 34432222222223344445567788887667777778899999998655444410 123345778899
Q ss_pred ecCCCCC------ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccc
Q 004141 248 APLNEGL------HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 321 (771)
Q Consensus 248 spDg~~~------~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 321 (771)
+|+++.. .++|+..+ .+..|.++|. .......+..+...+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~h~~~v~~ 218 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVG---------------WDGRLKVWNT-----------------NFQIRYTFKAHESNVNH 218 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEE---------------TTSEEEEEET-----------------TTEEEEEEECCSSCEEE
T ss_pred ccccccccccCCCCCEEEEEc---------------CCCEEEEEcC-----------------CCceeEEEcCccccceE
Confidence 9998420 00144433 2346777775 44444555666677889
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
.+|||||++|+..+.+. .|.+||+............ ...+..++|+||++
T Consensus 219 ~~~s~~g~~l~sgs~dg-----------~v~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp~~~ 268 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDK-----------KLLIWDILNLTYPQREFDA-------------------GSTINQIAFNPKLQ 268 (343)
T ss_dssp EEECTTSSEEEEEETTC-----------EEEEEESSCCSSCSEEEEC-------------------SSCEEEEEECSSSC
T ss_pred EEECCCCCEEEEEcCCC-----------eEEEEECCCCcccceeecC-------------------CCcEEEEEECCCCC
Confidence 99999999998777553 5888888433221100000 01245678999998
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEE---EecC-----------CCCCceeeEEeecCCEEEEEE
Q 004141 402 TMLLSSIWGSSQVIISVNVSSGELL---RITP-----------AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~---~l~~-----------~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.|. .. .++...| +++.+++.. .+.. ....+....|+|+|+.|+...
T Consensus 269 ~la-~~-~d~~v~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 269 WVA-VG-TDQGVKI--FNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEE-EE-ESSCEEE--EESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred EEE-EE-CCCCEEE--EEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 554 33 3444444 466665432 2221 112234567889998776554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-09 Score=113.73 Aligned_cols=244 Identities=12% Similarity=0.105 Sum_probs=146.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~ 176 (771)
..+...+|||||++||..... +.-.+|.+. .+....+..+. ...+. +.+++|+|+ ++.|+..+.+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d--g~i~iw~~~-~~~~~~~~~~~-~h~~~------v~~~~~~~~~~~~~l~s~~~d--- 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSD--KTIKIFEVE-GETHKLIDTLT-GHEGP------VWRVDWAHPKFGTILASCSYD--- 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETT--SCEEEEEEE-TTEEEEEEEEC-CCSSC------EEEEEECCGGGCSEEEEEETT---
T ss_pred ccEEEEEEcCCCCEEEEEECC--CcEEEEecC-CCcceeeeEec-CCCCc------EEEEEeCCCCCCCEEEEeccC---
Confidence 458889999999999877543 222333332 12222222221 11112 268999988 8888776432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC--C
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL--N 251 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD--g 251 (771)
..|.+||+.+++. ..+ ......+..+.|+|+ +
T Consensus 79 -----------------------------------------g~v~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 79 -----------------------------------------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp -----------------------------------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGGGC
T ss_pred -----------------------------------------CEEEEEEcCCCceeEeeee--cCCCcceEEEEeCCCCCC
Confidence 5789999998863 333 334557889999999 7
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC--
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP-- 326 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp-- 326 (771)
+. |+..+ .+..|.++|+ ..+ ....+..+...+..+.|+|
T Consensus 116 ~~----l~~~~---------------~d~~i~v~d~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 116 PL----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp SE----EEEEE---------------TTSEEEEEEC-----------------CTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred CE----EEEec---------------CCCcEEEEec-----------------CCCCceeeEEecCCCCceEEEEEcCcc
Confidence 76 66655 3347888887 333 2334455666788999999
Q ss_pred -----------CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCc
Q 004141 327 -----------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 395 (771)
Q Consensus 327 -----------DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~ 395 (771)
||+.|+..+.+. .|.+||+.++.... .....+.. +...+..++
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~------~~~~~~~~---------h~~~v~~~~ 213 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVA 213 (379)
T ss_dssp ----------CTTCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEE
T ss_pred ccccccccCCCCCCEEEEEeCCC-----------eEEEEEecCCCcce------eeEEEEec---------ccCcEeEEE
Confidence 789888777553 48888887654311 01111100 111345778
Q ss_pred cccCC--CEEEEEeeeCCeeEEEEEECCCCc---EEEecC---CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 396 WLSDG--CTMLLSSIWGSSQVIISVNVSSGE---LLRITP---AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 396 ~s~Dg--~~l~~~~~~~~~~~l~~~d~~tg~---~~~l~~---~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
|+||+ ..++++...++...+|.+ .+++ ...+.. ....+....|+++++.|+....+ ..+++.++.
T Consensus 214 ~sp~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d----g~i~iw~~~ 286 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD----NKVTLWKEN 286 (379)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEE--SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS----SSEEEEEEE
T ss_pred ECCCCCCCCeEEEEeCCCEEEEEeC--CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC----CcEEEEeCC
Confidence 99993 345566666776666654 4542 233322 22345567899999977766542 235555544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.6e-10 Score=129.43 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=156.3
Q ss_pred cccceeEEEEEEeecCCCCc----cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEe
Q 004141 67 ANKRKKFMLSTVISKENENS----VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFH 140 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~ 140 (771)
+....+.+.+|++....... ..++. ....+...+|||||++|+..+... .+.+|+ .+...+...
T Consensus 400 s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-----h~~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~ 469 (694)
T 3dm0_A 400 SASRDKSIILWKLTKDDKAYGVAQRRLTG-----HSHFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFV 469 (694)
T ss_dssp EEETTSEEEEEECCCSTTCSCEEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE
T ss_pred EEeCCCcEEEEEccCCCcccccccceecC-----CCCcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcceeEEe
Confidence 33445677777775433211 12222 225678899999999998776543 566773 333322222
Q ss_pred -cCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC---CCCCccCCCCCCcccccCCcC--cccCC
Q 004141 141 -VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG---GSSDKDCNSWKGQGDWEEDWG--ETYAG 214 (771)
Q Consensus 141 -~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~g--~~~~~ 214 (771)
....+ .+++|||||+.|+..+.+...+ .|+...... ......+..+.....|+++.. ..+++
T Consensus 470 ~h~~~v----------~~~~~s~~~~~l~s~s~D~~i~--iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 537 (694)
T 3dm0_A 470 GHTKDV----------LSVAFSLDNRQIVSASRDRTIK--LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537 (694)
T ss_dssp CCSSCE----------EEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE
T ss_pred CCCCCE----------EEEEEeCCCCEEEEEeCCCEEE--EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE
Confidence 12222 6899999999999888766543 333211000 011112333444556777642 24455
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.....|.+||+.+++..... ......+..++|||||+. |+..+ .+..|.++|+
T Consensus 538 s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~----l~sg~---------------~Dg~i~iwd~------- 590 (694)
T 3dm0_A 538 SWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSL----CASGG---------------KDGVVLLWDL------- 590 (694)
T ss_dssp ETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSBCEEEET-------
T ss_pred eCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC-------
Confidence 66789999999988765541 334556889999999997 77655 3347888887
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc-eeeEEe
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDVIP 373 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~ 373 (771)
.+++..........+....|||||..|+... + ..|.+||+.++........ ......
T Consensus 591 ----------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~-----------~~i~iwd~~~~~~~~~~~~~~~~~~~ 648 (694)
T 3dm0_A 591 ----------AEGKKLYSLEANSVIHALCFSPNRYWLCAAT-E-----------HGIKIWDLESKSIVEDLKVDLKAEAE 648 (694)
T ss_dssp ----------TTTEEEECCBCSSCEEEEEECSSSSEEEEEE-T-----------TEEEEEETTTTEEEEEECCCCC----
T ss_pred ----------CCCceEEEecCCCcEEEEEEcCCCcEEEEEc-C-----------CCEEEEECCCCCChhhhccccccccc
Confidence 5554433333445678899999998776543 2 2388999887653211000 000000
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
............ .......++|||||+.| ++.+.++...||.+
T Consensus 649 ~~~~~~~~~~~~-~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 649 KADNSGPAATKR-KVIYCTSLNWSADGSTL-FSGYTDGVIRVWGI 691 (694)
T ss_dssp -------------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC
T ss_pred cccccccccCCc-eeEEeeeEEEcCCCCEE-EEEcCCCeEEEEec
Confidence 000000000000 00012356899999966 56666777777754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.1e-11 Score=125.42 Aligned_cols=210 Identities=13% Similarity=0.084 Sum_probs=114.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++||+.|+... ..+.+.++++.... .....+ ......+...+|||||++|+..+... .+.
T Consensus 20 s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~~~~l~s~s~d~-----~v~ 80 (377)
T 3dwl_C 20 NSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTF-----SDHDKIVTCVDWAPKSNRIVTCSQDR-----NAY 80 (377)
T ss_dssp CSSSSEEECCC---------SSSCBCEEEEETTEEEECCCB-----CCCSSCEEEEEECTTTCCEEEEETTS-----SEE
T ss_pred CCCCCEEEEec---------CCCEEEEEEccCCceEEEEEE-----ecCCceEEEEEEeCCCCEEEEEeCCC-----eEE
Confidence 56888776542 23455666664321 111222 22235688999999999998876543 344
Q ss_pred Eec--CCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 129 LWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 129 ~~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
+|+ .+. ........ ...+ .+..+.|+|||+.|+..+.+
T Consensus 81 vwd~~~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~l~~~~~d-------------------------------- 121 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLL-RLNR------AATFVRWSPNEDKFAVGSGA-------------------------------- 121 (377)
T ss_dssp EC------CCCCEEECC-CCSS------CEEEEECCTTSSCCEEEESS--------------------------------
T ss_pred EEEcCCCCceeeeeEec-ccCC------ceEEEEECCCCCEEEEEecC--------------------------------
Confidence 552 222 11222211 1111 23689999999999886533
Q ss_pred CCcCcccCCccCceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 206 EDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
..|.+||+.+++ .+.+. .+....+..++|+|||+. |+..+. +..
T Consensus 122 ------------~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~~~~~---------------d~~ 169 (377)
T 3dwl_C 122 ------------RVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVL----LAAGCA---------------DRK 169 (377)
T ss_dssp ------------SCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSE----EEEEES---------------SSC
T ss_pred ------------CeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCE----EEEEeC---------------CCE
Confidence 468888888776 44552 124567889999999997 777652 235
Q ss_pred eEEEecccccc-hhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 282 LYAVRVSLYKS-EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 282 l~~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|.++|+..... .......+......++ ...+ .+...+....|||||+.|+..+.+. .|.+||+.++
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~iwd~~~~ 237 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-----------SVTIAYPSAP 237 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-----------EEC-CEECST
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-----------cEEEEECCCC
Confidence 66666510000 0000000000000122 2223 5556688999999999998877553 4888888876
Q ss_pred CC
Q 004141 360 GN 361 (771)
Q Consensus 360 ~~ 361 (771)
+.
T Consensus 238 ~~ 239 (377)
T 3dwl_C 238 EQ 239 (377)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-09 Score=109.17 Aligned_cols=289 Identities=11% Similarity=0.026 Sum_probs=155.7
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCC----CCeEEEEecCCCCCCeE
Q 004141 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPS----GSKLLVVRNPENESPIQ 126 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPd----G~~la~~~~~~~~~~~~ 126 (771)
+|+....++.... ..+.+|++.... ....+.....+.....+...+|||+ |+.|+.....+ .
T Consensus 31 ~~~~~~~~~~~~~--------~~v~vw~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg-----~ 96 (366)
T 3k26_A 31 KEGDPLVFATVGS--------NRVTLYECHSQG-EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG-----I 96 (366)
T ss_dssp CTTSCEEEEEEET--------TEEEEEEECGGG-CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC-----E
T ss_pred CCCCceEEEECCC--------CEEEEEEcCCCc-EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC-----E
Confidence 3466555554432 256666664332 2222221111112245788999999 66777665443 5
Q ss_pred EEEe--cCCcceEEEec-CCcccccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 127 FELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~--~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
+.+| ..++....+.. ... +..+.|+| |++.|+..+.
T Consensus 97 i~v~d~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~l~s~~~------------------------------ 136 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGHGNA----------INELKFHPRDPNLLLSVSK------------------------------ 136 (366)
T ss_dssp EEEECTTTCCEEEEEESCCSC----------EEEEEECSSCTTEEEEEET------------------------------
T ss_pred EEEEEchhceEeeeecCCCCc----------EEEEEECCCCCCEEEEEeC------------------------------
Confidence 5566 33443333331 222 26899999 8888877543
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccC--CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCc
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 280 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~--~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~ 280 (771)
...|.+||+.+++...... ......+..+.|+|||+. |+..+ .+.
T Consensus 137 --------------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~---------------~dg 183 (366)
T 3k26_A 137 --------------DHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK----IMSCG---------------MDH 183 (366)
T ss_dssp --------------TSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE----EEEEE---------------TTS
T ss_pred --------------CCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE----EEEec---------------CCC
Confidence 2579999999887655510 134457889999999997 77665 233
Q ss_pred eeEEEecccccchhhhhhhhcC-CCCC------------CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 281 ALYAVRVSLYKSEASELELKES-SSED------------LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 281 ~l~~~d~~~~~~~~~~~~~~~~-~~~~------------~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
.|.++|+...... ..+..... ..+. .....+..+...+....|+ |+.|+..+.+
T Consensus 184 ~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d---------- 250 (366)
T 3k26_A 184 SLKLWRINSKRMM-NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCE---------- 250 (366)
T ss_dssp CEEEEESCSHHHH-HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSS----------
T ss_pred CEEEEECCCCccc-cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecC----------
Confidence 6788887321100 00000000 0000 0011111245567788888 6777665544
Q ss_pred cccceeeecCCCCCCC--Ccccee--eEEecccccCCCCCcccccCCCCCCccccC--CCEEEEEeeeCCeeEEEEEECC
Q 004141 348 TDSLHRIDWPTNGNFS--SLEKIV--DVIPVVQCAEGDCFPGLYSSSILSNPWLSD--GCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~--~~~~~~--~~~~~~~~~~~~~f~g~~~~~~~~~~~s~D--g~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..|.+||+.++.... +..... ........ +...+..++|+|| ++.|+ +...++. |..+|+.
T Consensus 251 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~~~l~-~~~~dg~--i~vwd~~ 317 (366)
T 3k26_A 251 -NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---------SQCDIWYMRFSMDFWQKMLA-LGNQVGK--LYVWDLE 317 (366)
T ss_dssp -SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---------SSCCSSCCCCEECTTSSEEE-EECTTSC--EEEEECC
T ss_pred -CEEEEEeCCCccccccccccCCcchheeccccc---------cCCcEEEEEEcCCCCCcEEE-EEecCCc--EEEEECC
Confidence 358888887654311 100000 11111110 1124567899999 88654 4444554 4455676
Q ss_pred CCc-----EEEecCC--CCCceeeEEeecCCEEEEEEe
Q 004141 422 SGE-----LLRITPA--ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 422 tg~-----~~~l~~~--~~~~~~~~~s~dg~~l~~~~~ 452 (771)
+++ ...+... ...+....|+++++.|+....
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 664 2244443 345666789999988776553
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=111.93 Aligned_cols=234 Identities=12% Similarity=0.167 Sum_probs=137.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-C--cceEEEecCCcccccccCCCcccceeecCC--CCeEEEEec
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-S--QLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~ 172 (771)
..+...+|||||++||..+... ...+| .. + +....+. +..+. +..++|+|+ |+.|+..+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~---gH~~~------V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLT---GHEGP------VWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEEC---CCSSC------EEEEEECCGGGCSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEc---cccCC------eEEEEecCCCcCCEEEEEcC
Confidence 4578899999999998776543 34455 22 1 2222222 11112 268999874 888877643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecC-
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspD- 250 (771)
+ ..|.+||+.+++...+. -......+..+.|+|+
T Consensus 76 D--------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 76 D--------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp T--------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred C--------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence 3 57899999887532221 0233456889999998
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC
Q 004141 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP 326 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp 326 (771)
|+. |+..+ .+..|.++|+ ..+ ....+..+...+.+..|+|
T Consensus 112 ~g~~----l~s~s---------------~d~~v~~wd~-----------------~~~~~~~~~~~~~h~~~v~~~~~~p 155 (297)
T 2pm7_B 112 YGPM----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAP 155 (297)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEB-----------------CSSSCBCCEEEECCSSCEEEEEECC
T ss_pred CCcE----EEEEE---------------CCCcEEEEEe-----------------cCCCceeeeeeecccCccceEeecC
Confidence 665 66554 2336777887 322 1234445566788899999
Q ss_pred C-------------CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 327 D-------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 327 D-------------G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
+ ++.|+..+.+. .|.+||+.++.... .....+. + +...+..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~sgs~D~-----------~v~lwd~~~~~~~~------~~~~~l~--------~-H~~~V~~ 209 (297)
T 2pm7_B 156 ATIEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLE--------G-HSDWVRD 209 (297)
T ss_dssp CC------------CCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEEC--------C-CSSCEEE
T ss_pred CcccccccCCCCCCcceEEEEcCCC-----------cEEEEEEcCCCceE------EEEEEec--------C-CCCceEE
Confidence 7 46676666543 47788876644210 0000010 0 1123557
Q ss_pred CccccCC--CEEEEEeeeCCeeEEEEEECCCCc-EEEec---CCCCCceeeEEeecCCEEEEEEe
Q 004141 394 NPWLSDG--CTMLLSSIWGSSQVIISVNVSSGE-LLRIT---PAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 394 ~~~s~Dg--~~l~~~~~~~~~~~l~~~d~~tg~-~~~l~---~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
++|+||+ ..++++.+.++...||.++...+. ...+. .....+....|+++++.|+....
T Consensus 210 v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 210 VAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp EEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred EEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 8899996 456677777888888866532222 22222 11223455688999987765553
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-10 Score=122.38 Aligned_cols=293 Identities=10% Similarity=0.013 Sum_probs=159.1
Q ss_pred cccceeEEEEEEeecCCC-----CccceeecCCccccccceEEEeCCC----C---CeEEEEecCCCCCCeEEEEecCCc
Q 004141 67 ANKRKKFMLSTVISKENE-----NSVTFQWAPFPVEMTGASAVVPSPS----G---SKLLVVRNPENESPIQFELWSQSQ 134 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~-----~~~~lt~~~~~~~~~~~~~~~~SPd----G---~~la~~~~~~~~~~~~~~~~~~~~ 134 (771)
.....+.+.+|++..... ....+.. ....+...+|+|+ | +.|+..... +.-.+|.+..+..
T Consensus 31 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d--g~i~iw~~~~~~~ 103 (397)
T 1sq9_A 31 SCSGDGYLKVWDNKLLDNENPKDKSYSHFV-----HKSGLHHVDVLQAIERDAFELCLVATTSFS--GDLLFYRITREDE 103 (397)
T ss_dssp EEETTSEEEEEESBCCTTCCGGGGEEEEEC-----CTTCEEEEEEEEEEETTTEEEEEEEEEETT--SCEEEEEEEECTT
T ss_pred EEcCCCEEEEEECCCcccccCCCcceEEec-----CCCcEEEEEEecccccCCccccEEEEEcCC--CCEEEEEccCCcc
Confidence 334456788877754431 1122221 2245788999999 9 888876543 3333444333222
Q ss_pred c----eEEEecCCcccccccCCCcccceeec----CCCCe-EEEEecCCCCCCCCccCCC------CCCCC-----CC--
Q 004141 135 L----EKEFHVPQTVHGSVYADGWFEGISWN----SDETL-IAYVAEEPSPSKPTFSLGS------TKGGS-----SD-- 192 (771)
Q Consensus 135 ~----~~~~~~~~~~~g~~~~~~~~~~~~wS----pDg~~-la~~~~~~~~~~~~~~~~~------~~~~~-----~~-- 192 (771)
. .+....... + ..++.+..+.|+ |||+. |+..+.+.... .|+... ..... ..
T Consensus 104 ~~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T 1sq9_A 104 TKKVIFEKLDLLDS-D---MKKHSFWALKWGASNDRLLSHRLVATDVKGTTY--IWKFHPFADESNSLTLNWSPTLELQG 177 (397)
T ss_dssp TCCEEEEEECCSCT-T---GGGSCEEEEEEECCC----CEEEEEEETTSCEE--EEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred cccccceeeccccc-c---cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE--EEeCCccccccccceeeccCcceeee
Confidence 1 222221100 0 001123689999 99999 87776654322 233221 11111 11
Q ss_pred -----ccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-------CCccceEEEecCCCCCccEEEE
Q 004141 193 -----KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-------SLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 193 -----~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-------~~~~~~~~wspDg~~~~~~l~~ 260 (771)
..+........|.++. ..+++.....|.+||+.+++.... ... ...+..+.|+|||+. |+.
T Consensus 178 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~h~~~~~~i~~i~~~~~~~~----l~~ 250 (397)
T 1sq9_A 178 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN--FESQHSMINNSNSIRSVKFSPQGSL----LAI 250 (397)
T ss_dssp EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE--EECCC---CCCCCEEEEEECSSTTE----EEE
T ss_pred eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE--EeccccccccCCccceEEECCCCCE----EEE
Confidence 1234444567788886 666777788999999998876554 222 557889999999997 776
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCC-------------CCccccceeecC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE-------------SISSAFFPRFSP 326 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~-------------~~~~~~~p~~Sp 326 (771)
.+... ....|.++|+ .+++ ...+.. +...+....|+|
T Consensus 251 ~~~d~------------~~g~i~i~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 251 AHDSN------------SFGCITLYET-----------------EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp EEEET------------TEEEEEEEET-----------------TTCCEEEEECBC--------CCBSBSSCEEEEEECS
T ss_pred EecCC------------CCceEEEEEC-----------------CCCcccceeccCcccccccccccccCCcEEEEEECC
Confidence 55210 0136888887 4443 344444 556788999999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce-eeEEecccccCC-CCCcccccCCCCCCccccCCC---
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPVVQCAEG-DCFPGLYSSSILSNPWLSDGC--- 401 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~-~~f~g~~~~~~~~~~~s~Dg~--- 401 (771)
||+.|+..+.+ ..|.+||+.+++........ ............ ......+...+..++|+|||+
T Consensus 302 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~ 370 (397)
T 1sq9_A 302 SGETLCSAGWD-----------GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG 370 (397)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence 99998876654 35889998776532111000 000000000000 000000123456789999984
Q ss_pred ------EEEEEeeeCCeeEEEEEE
Q 004141 402 ------TMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 402 ------~l~~~~~~~~~~~l~~~d 419 (771)
.++++...++...+|.++
T Consensus 371 ~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 371 MGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp TTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ccccccceEEEecCCCcEEEEEcC
Confidence 356666677777777554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-09 Score=122.00 Aligned_cols=277 Identities=12% Similarity=0.123 Sum_probs=161.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCC---CCccceeecCCcccccc-ceEEEeCC--CCCeEEEEecCCCCC
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN---ENSVTFQWAPFPVEMTG-ASAVVPSP--SGSKLLVVRNPENES 123 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~lt~~~~~~~~~~-~~~~~~SP--dG~~la~~~~~~~~~ 123 (771)
++||+.|++..+ +.+.++++.... .....+.. .... +...+||| ||++||.....+
T Consensus 27 spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~~~~~~~-----h~~~~v~~~~~sp~~~~~~l~s~~~dg--- 88 (615)
T 1pgu_A 27 DPTTNAIAYPCG----------KSAFVRCLDDGDSKVPPVVQFTG-----HGSSVVTTVKFSPIKGSQYLCSGDESG--- 88 (615)
T ss_dssp ETTTTEEEEEET----------TEEEEEECCSSCCSSCSEEEECT-----TTTSCEEEEEECSSTTCCEEEEEETTS---
T ss_pred CCCCCEEEEecC----------CeEEEEECCCCCCccccceEEec-----CCCceEEEEEECcCCCCCEEEEecCCC---
Confidence 579999998751 256666665331 12222322 2255 78999999 999998876532
Q ss_pred CeEEEEec--CC------cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 124 PIQFELWS--QS------QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 124 ~~~~~~~~--~~------~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
.+.+|+ .+ ....+.... ... +.+..+.|||||+.|+.......
T Consensus 89 --~v~vw~~~~~~~~~~~~~~~~~~~~-~~~------~~v~~~~~s~~~~~l~~~~~~~~-------------------- 139 (615)
T 1pgu_A 89 --KVIVWGWTFDKESNSVEVNVKSEFQ-VLA------GPISDISWDFEGRRLCVVGEGRD-------------------- 139 (615)
T ss_dssp --EEEEEEEEEEGGGTEEEEEEEEEEE-CCS------SCEEEEEECTTSSEEEEEECCSS--------------------
T ss_pred --EEEEEeCCCCcccccccccccchhh-ccc------ccEEEEEEeCCCCEEEEeccCCC--------------------
Confidence 344441 22 112222211 111 12369999999999998764421
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
....|++|| .+.....+ ......+..+.|+||++. +++++.
T Consensus 140 --------------------~~~~v~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~------------ 180 (615)
T 1pgu_A 140 --------------------NFGVFISWD-SGNSLGEV--SGHSQRINACHLKQSRPM----RSMTVG------------ 180 (615)
T ss_dssp --------------------CSEEEEETT-TCCEEEEC--CSCSSCEEEEEECSSSSC----EEEEEE------------
T ss_pred --------------------CccEEEEEE-CCCcceee--ecCCccEEEEEECCCCCc----EEEEEe------------
Confidence 225778887 33344445 344557888999999996 555552
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCc---cccceeecCC-CCEEEEEecCCCCCCCCcccccc
Q 004141 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~---~~~~p~~SpD-G~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
.+..|.++|+ .+++ ...+..+.. .+....|+|| |+.|+..+.+. .
T Consensus 181 --~d~~v~vwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~ 230 (615)
T 1pgu_A 181 --DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----------K 230 (615)
T ss_dssp --TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----------C
T ss_pred --CCCcEEEEeC-----------------CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-----------e
Confidence 3347888887 4443 445555666 7889999999 99888776553 5
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
|.+||+.+++...... ... . .....+..+.|+ |++.|+ +...++. |..+|+.+++......
T Consensus 231 i~vwd~~~~~~~~~~~---------~~~-~-----~~~~~v~~~~~~-~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIE---------DDQ-E-----PVQGGIFALSWL-DSQKFA-TVGADAT--IRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEETTTCCEEEECC---------BTT-B-----CCCSCEEEEEES-SSSEEE-EEETTSE--EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCEeEEec---------ccc-c-----ccCCceEEEEEc-CCCEEE-EEcCCCc--EEEEECCCCcEEEEEc
Confidence 8999987765422110 000 0 011134567899 888664 4444444 5555887777554432
Q ss_pred CC-----CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 431 AE-----SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 431 ~~-----~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.. .......+ ++++.++....+ ..+++.++.
T Consensus 292 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~----g~i~~~d~~ 327 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVA-TGNGRIISLSLD----GTLNFYELG 327 (615)
T ss_dssp CCTTCGGGCEEEEEE-EETTEEEEEETT----SCEEEEETT
T ss_pred CCCCcccCceeEEEe-CCCCeEEEEECC----CCEEEEECC
Confidence 22 11222333 377777665532 345555544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-09 Score=108.40 Aligned_cols=164 Identities=9% Similarity=-0.008 Sum_probs=107.3
Q ss_pred ccceeecC--CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee
Q 004141 155 FEGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA 232 (771)
Q Consensus 155 ~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~ 232 (771)
+..++|+| +|+.|+..+.+ ..|.+||+.+++...
T Consensus 128 v~~~~~~~~~~~~~l~s~s~d--------------------------------------------g~i~~wd~~~~~~~~ 163 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNR--------------------------------------------GTIGFQSYEDDSQYI 163 (343)
T ss_dssp EEEEECCC---CCEEEEEETT--------------------------------------------CCEEEEESSSSCEEE
T ss_pred EEEEEcCCCCCCCEEEEEeCC--------------------------------------------CcEEEEECCCCcEEE
Confidence 36899999 99988876432 578999999988765
Q ss_pred ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc--e
Q 004141 233 VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--V 310 (771)
Q Consensus 233 l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~ 310 (771)
+........+..++|+|||+. |+..+ .+..|.++|+ .+++. .
T Consensus 164 ~~~~~~~~~i~~~~~~pdg~~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~ 207 (343)
T 3lrv_A 164 VHSAKSDVEYSSGVLHKDSLL----LALYS---------------PDGILDVYNL-----------------SSPDQASS 207 (343)
T ss_dssp EECCCSSCCCCEEEECTTSCE----EEEEC---------------TTSCEEEEES-----------------SCTTSCCE
T ss_pred EEecCCCCceEEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCCCCcc
Confidence 521223335788999999986 66544 3347888898 55543 3
Q ss_pred ecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004141 311 NLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 311 ~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
.+.. +...+....|||||+.|+..+ ++ .|.+||+.+++......... ...+
T Consensus 208 ~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-----------~v~iwd~~~~~~~~~~~~~~----------~~~~------ 259 (343)
T 3lrv_A 208 RFPVDEEAKIKEVKFADNGYWMVVEC-DQ-----------TVVCFDLRKDVGTLAYPTYT----------IPEF------ 259 (343)
T ss_dssp ECCCCTTSCEEEEEECTTSSEEEEEE-SS-----------BEEEEETTSSTTCBSSCCCB----------C---------
T ss_pred EEeccCCCCEEEEEEeCCCCEEEEEe-CC-----------eEEEEEcCCCCcceeecccc----------cccc------
Confidence 5655 667899999999999988777 21 48999998765422111100 0000
Q ss_pred CCC--CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 390 SIL--SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 390 ~~~--~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
... .++|+|+|++|+..+..++...+|.++.......
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp --CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 112 3789999997765444367778887764444333
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-09 Score=115.63 Aligned_cols=206 Identities=10% Similarity=0.076 Sum_probs=128.5
Q ss_pred ccceEEEeCCC-CCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004141 99 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
..+...+|+|+ ++.||..+..+ .+.+|+ .++...+... .+..+.| .+++|+| |++.|+..+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-~gH~~~V------~~l~f~p~~~~~l~s~s~-- 185 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-IGAGGSI------TGLKFNPLNTNQFYASSM-- 185 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC-CSSSCCC------CEEEECSSCTTEEEEECS--
T ss_pred CCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-cCCCCCE------EEEEEeCCCCCEEEEEeC--
Confidence 34788999995 55676654433 455662 3333333332 1222223 7999998 6777776532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC-CCCCCccceEEEecCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~-~~~~~~~~~~~wspDg~~ 253 (771)
+..|.+||+.++..+.+.. ......+..+.|+|||+.
T Consensus 186 ------------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 186 ------------------------------------------EGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp ------------------------------------------SSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTE
T ss_pred ------------------------------------------CCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCE
Confidence 2578899998887666521 112334668899999996
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+..+ ....|+++|+ .+.....+..+...+.+..|+|+++.++.
T Consensus 224 ----l~~g~---------------~dg~i~~wd~-----------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 224 ----VVTGD---------------NVGNVILLNM-----------------DGKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp ----EEEEC---------------SSSBEEEEES-----------------SSCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred ----EEEEe---------------CCCcEeeecc-----------------CcceeEEEecccceEEeeeecCCCceEEE
Confidence 66554 3347888998 66666777777778999999999987665
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
....+ ..|.+||+.+........... -+...+..++|+|||++|+ +...++..
T Consensus 268 s~s~d----------~~v~iwd~~~~~~~~~~~~~~----------------~h~~~v~~~~~spdg~~l~-s~~~D~~i 320 (435)
T 4e54_B 268 TASVD----------QTVKIWDLRQVRGKASFLYSL----------------PHRHPVNAACFSPDGARLL-TTDQKSEI 320 (435)
T ss_dssp EEETT----------SBCCEEETTTCCSSSCCSBCC----------------BCSSCEEECCBCTTSSEEE-EEESSSCE
T ss_pred EecCc----------ceeeEEecccccccceEEEee----------------eccccccceeECCCCCeeE-EEcCCCEE
Confidence 55433 347888887655322110000 0111345778999999664 55556655
Q ss_pred EEEEEECCCCcE
Q 004141 414 VIISVNVSSGEL 425 (771)
Q Consensus 414 ~l~~~d~~tg~~ 425 (771)
.|| |+.+++.
T Consensus 321 ~iw--d~~~~~~ 330 (435)
T 4e54_B 321 RVY--SASQWDC 330 (435)
T ss_dssp EEE--ESSSSSS
T ss_pred EEE--ECCCCcc
Confidence 555 6666653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-09 Score=114.40 Aligned_cols=287 Identities=11% Similarity=0.024 Sum_probs=155.1
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEecCCc-ceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||++ +.||-.+.+ +.-.+|.+..... .......-.+..+ .+..+.|+|||+.|+..+.+...
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D--~~i~vWd~~~~~~~~~~~~~~l~~h~~------~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRD--KTIIMWKLTRDETNYGIPQRALRGHSH------FVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETT--SCEEEEEECCSSSCSEEEEEEECCCSS------CEEEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCC--CeEEEEECCCCCcccceeeEEEeCCCC------CEEEEEECCCCCEEEEEcccccc
Confidence 568899999984 666655443 3333444332211 1111111011111 23689999999999887765532
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
. .|......................+.++....+++..+..+.+||+.+..............+....|++++..
T Consensus 111 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 185 (340)
T 4aow_A 111 R--LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN--- 185 (340)
T ss_dssp E--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS---
T ss_pred e--EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC---
Confidence 1 11111000000000011111122334443344445566789999987766554421233446678899999876
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
.++++- ..+..|.++|+ .+++ ...+..+...+.+..|||||+.|+..+
T Consensus 186 -~~~~s~-------------~~d~~i~i~d~-----------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 186 -PIIVSC-------------GWDKLVKVWNL-----------------ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp -CEEEEE-------------ETTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -cEEEEE-------------cCCCEEEEEEC-----------------CCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 444331 12336888887 4444 455666677788999999999888766
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.+ ..|.+||+.+.......... ..+....|+|++..+ ..+ .++. |
T Consensus 235 ~D-----------g~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~-~~~-~d~~--i 279 (340)
T 4aow_A 235 KD-----------GQAMLWDLNEGKHLYTLDGG--------------------DIINALCFSPNRYWL-CAA-TGPS--I 279 (340)
T ss_dssp TT-----------CEEEEEETTTTEEEEEEECS--------------------SCEEEEEECSSSSEE-EEE-ETTE--E
T ss_pred CC-----------CeEEEEEeccCceeeeecCC--------------------ceEEeeecCCCCcee-ecc-CCCE--E
Confidence 54 25888898765432110000 123456789988643 333 3444 5
Q ss_pred EEEECCCCcEEEecC----------CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 416 ISVNVSSGELLRITP----------AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 416 ~~~d~~tg~~~~l~~----------~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
..+|+.++....-.. ....+....|++|++.|+....+ ..|++-++.++
T Consensus 280 ~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D----g~v~iW~~~tG 338 (340)
T 4aow_A 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD----NLVRVWQVTIG 338 (340)
T ss_dssp EEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT----SCEEEEEEEC-
T ss_pred EEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC----CEEEEEeCCCc
Confidence 555777665432221 11234456789999877654432 23666666554
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=125.87 Aligned_cols=183 Identities=15% Similarity=0.238 Sum_probs=121.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||++||..+..+ ...+|+... .+.... |........+.+++|||||+.||..+.++..+
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~--~l~~l~---~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk- 154 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK--MLTNLD---SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ- 154 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-----CEEEEETTE--EEEECC---CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE-
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCc--eeeecc---CCCccccccEEEEEEcCCCCEEEEEcCCCEEE-
Confidence 4688999999999999887654 456664322 222222 11100111236899999999999998877544
Q ss_pred CCccCCCCCCC-------CC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee----eccCCCCCCccc
Q 004141 179 PTFSLGSTKGG-------SS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVG 243 (771)
Q Consensus 179 ~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~----~l~~~~~~~~~~ 243 (771)
.|+....... .. ...+..|.....|+||. .+++..+..+++||+.+++.. .+. ......+.
T Consensus 155 -IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~ 230 (588)
T 2j04_A 155 -FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT 230 (588)
T ss_dssp -EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred -EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence 4443332210 11 13355688889999995 777888899999999988743 231 12345788
Q ss_pred eEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-cCCCCccccce
Q 004141 244 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESISSAFFP 322 (771)
Q Consensus 244 ~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~~~~~~~p 322 (771)
+++|| |+. |+..+ ...|.++|+ .+++... ...+...+.+.
T Consensus 231 svaFs--g~~----LASa~----------------~~tIkLWd~-----------------~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 231 DLKIV--DYK----VVLTC----------------PGYVHKIDL-----------------KNYSISSLKTGSLENFHII 271 (588)
T ss_dssp CEEEE--TTE----EEEEC----------------SSEEEEEET-----------------TTTEEEEEECSCCSCCCEE
T ss_pred EEEEE--CCE----EEEEe----------------CCeEEEEEC-----------------CCCeEEEEEcCCCceEEEE
Confidence 99999 554 66543 137899998 6666633 33666678889
Q ss_pred ee--cCCCCEEEEEe
Q 004141 323 RF--SPDGKFLVFLS 335 (771)
Q Consensus 323 ~~--SpDG~~l~f~~ 335 (771)
.| ||||+.|+-..
T Consensus 272 a~~~s~d~~~La~a~ 286 (588)
T 2j04_A 272 PLNHEKESTILLMSN 286 (588)
T ss_dssp EETTCSSCEEEEECS
T ss_pred EeeeCCCCCEEEEEc
Confidence 99 99998776554
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.5e-09 Score=113.81 Aligned_cols=239 Identities=12% Similarity=0.106 Sum_probs=151.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....||+ ..++.....+ .+.+| ..+....+..... .+ .+.+++|+|||+.|+..+.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~~--~~------~v~~v~~s~~~~~l~~~~~------ 154 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALER-----NVYVWNADSGSVSALAETDE--ST------YVASVKWSHDGSFLSVGLG------ 154 (401)
T ss_dssp CBCEEECT--TSEEEEEETT-----EEEEEETTTCCEEEEEECCT--TC------CEEEEEECTTSSEEEEEET------
T ss_pred EEEEeecC--CCEEEEECCC-----eEEEeeCCCCcEeEeeecCC--CC------CEEEEEECCCCCEEEEECC------
Confidence 34466775 4455544332 34455 4455555544321 11 2368999999999988643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...|.+||+.+++..... ......+..+.| +++. |
T Consensus 155 --------------------------------------dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l 189 (401)
T 4aez_A 155 --------------------------------------NGLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHV----L 189 (401)
T ss_dssp --------------------------------------TSCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTE----E
T ss_pred --------------------------------------CCeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCE----E
Confidence 257899999887754441 344456777888 4554 5
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ....|.++|+.. .......+..+...+....|+|||+.|+..+.+.
T Consensus 190 ~~~~---------------~dg~i~i~d~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~ 239 (401)
T 4aez_A 190 SSGS---------------RSGAIHHHDVRI---------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN 239 (401)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEc---------------CCCCEEEEeccc---------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC
Confidence 5544 334788888720 1223455666777889999999999988877653
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.++........ ....+..++|+|++..++++........|..+
T Consensus 240 -----------~v~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 240 -----------VVQIWDARSSIPKFTKTN-------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp -----------CEEEEETTCSSEEEEECC-------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred -----------eEEEccCCCCCccEEecC-------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 488999877543211000 11235678899999888777642234457777
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
|+.+++..........+....|+++++.++.+....+ ..+.+.++.+
T Consensus 290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~ 336 (401)
T 4aez_A 290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSS 336 (401)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEET
T ss_pred ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCC
Confidence 8888887665555555677889999998887653332 4567766654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.7e-09 Score=113.34 Aligned_cols=246 Identities=13% Similarity=0.067 Sum_probs=139.0
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
.++||+.|+... ..+.+.+|++... +.. .+.. ....+...+|+|||++|+..+... ..
T Consensus 131 ~s~dg~~l~s~~---------~d~~i~iwd~~~~--~~~~~~~~-----h~~~v~~~~~~p~~~~l~s~s~d~-----~v 189 (393)
T 1erj_A 131 FSPDGKFLATGA---------EDRLIRIWDIENR--KIVMILQG-----HEQDIYSLDYFPSGDKLVSGSGDR-----TV 189 (393)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEETTTT--EEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred ECCCCCEEEEEc---------CCCeEEEEECCCC--cEEEEEcc-----CCCCEEEEEEcCCCCEEEEecCCC-----cE
Confidence 357888777543 2356777776322 222 2211 224578899999999998766543 55
Q ss_pred EEec--CCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 128 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 128 ~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
.+|+ .++..........+ ..+.|+| ||+.|+..+.+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~s~d------------------------------- 228 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIEDGV----------TTVAVSPGDGKYIAAGSLD------------------------------- 228 (393)
T ss_dssp EEEETTTTEEEEEEECSSCE----------EEEEECSTTCCEEEEEETT-------------------------------
T ss_pred EEEECCCCeeEEEEEcCCCc----------EEEEEECCCCCEEEEEcCC-------------------------------
Confidence 6663 33333333322222 5889999 89888876432
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeec-c-----CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccC
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQAV-K-----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 278 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~-----~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~ 278 (771)
..|.+||+.+++.... . .......+..++|+|||+. |+..+ .
T Consensus 229 -------------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~----l~s~s---------------~ 276 (393)
T 1erj_A 229 -------------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS----VVSGS---------------L 276 (393)
T ss_dssp -------------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE----EEEEE---------------T
T ss_pred -------------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE----EEEEe---------------C
Confidence 5688899888765432 1 0123346778999999997 76554 2
Q ss_pred CceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 279 PCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 279 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
+..|.++|+.... ... .......+. ...+..+...+.+..|+|||++|+..+.+ ..|++||+.
T Consensus 277 d~~v~~wd~~~~~----~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----------~~v~iwd~~ 340 (393)
T 1erj_A 277 DRSVKLWNLQNAN----NKS-DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----------RGVLFWDKK 340 (393)
T ss_dssp TSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----------SEEEEEETT
T ss_pred CCEEEEEECCCCC----Ccc-cccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----------CeEEEEECC
Confidence 2367777762100 000 000001111 22344555668889999999998876655 258899988
Q ss_pred CCCCCCCccceee-EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 358 TNGNFSSLEKIVD-VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 358 ~~~~~~~~~~~~~-~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
+++......+... +..+. ......|+||+. ++++...++...||.+.
T Consensus 341 ~~~~~~~l~~h~~~v~~v~--------------~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYN-VFATGSGDCKARIWKYK 388 (393)
T ss_dssp TCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEE--------------ecCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence 7654221111100 00000 001234566776 55677778888888764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.9e-09 Score=112.62 Aligned_cols=204 Identities=9% Similarity=0.043 Sum_probs=129.1
Q ss_pred ccceEEEeCCCC-CeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecC-CCCeEEEEecCC
Q 004141 99 TGASAVVPSPSG-SKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp-Dg~~la~~~~~~ 174 (771)
..+...+|||+| +.||..+..+ .+.+| ..+........ .+..+ .+.++.|+| |++.|+..+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~h~~------~v~~~~~~~~~~~~l~s~~~-- 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQG-MGPGD------AITGMKFNQFNTNQLFVSSI-- 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECC-CSTTC------BEEEEEEETTEEEEEEEEET--
T ss_pred CCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeec-CCcCC------ceeEEEeCCCCCCEEEEEeC--
Confidence 457889999999 7777665533 34555 33344443332 11111 236899999 6676666532
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCCCC
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 253 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~ 253 (771)
...|.+||+.++....+.... ....+..++|+||++.
T Consensus 140 ------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 177 (383)
T 3ei3_B 140 ------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177 (383)
T ss_dssp ------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCE
Confidence 257899999987776663211 1245788999999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC-EEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-FLV 332 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~-~l~ 332 (771)
|+..+ .+..|+++|+ .+.....+..+...+....|+|+|+ .|+
T Consensus 178 ----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 178 ----LATGD---------------STGRLLLLGL-----------------DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp ----EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred ----EEEEC---------------CCCCEEEEEC-----------------CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 77655 3347999997 5566677777778899999999999 555
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCCEEEEEeeeCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGS 411 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-Dg~~l~~~~~~~~ 411 (771)
..+.+ ..|.+||+.+.+.... ...... ....+..++|+| ||+.|+ +...++
T Consensus 222 s~~~d-----------~~i~iwd~~~~~~~~~------~~~~~~----------~~~~v~~~~~s~~~~~~l~-~~~~d~ 273 (383)
T 3ei3_B 222 TSSVD-----------ATVKLWDLRNIKDKNS------YIAEMP----------HEKPVNAAYFNPTDSTKLL-TTDQRN 273 (383)
T ss_dssp EEETT-----------SEEEEEEGGGCCSTTC------EEEEEE----------CSSCEEEEEECTTTSCEEE-EEESSS
T ss_pred EEeCC-----------CEEEEEeCCCCCcccc------eEEEec----------CCCceEEEEEcCCCCCEEE-EEcCCC
Confidence 44433 3588899876442111 011000 011345788999 998665 444444
Q ss_pred eeEEEEEECCCCc
Q 004141 412 SQVIISVNVSSGE 424 (771)
Q Consensus 412 ~~~l~~~d~~tg~ 424 (771)
. |..+|+.+++
T Consensus 274 ~--i~iwd~~~~~ 284 (383)
T 3ei3_B 274 E--IRVYSSYDWS 284 (383)
T ss_dssp E--EEEEETTBTT
T ss_pred c--EEEEECCCCc
Confidence 4 5555776655
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=117.23 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=115.9
Q ss_pred ceEEEEEccCCc--------eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 218 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~--------~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++. ...+ ......+..+.|+|||+. +++++. .+..|.++|+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~----~l~s~~--------------~dg~i~iwd~-- 161 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQN----VLLSAG--------------CDNVILVWDV-- 161 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTT----EEEEEE--------------TTSCEEEEET--
T ss_pred CeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCC----EEEEEc--------------CCCEEEEEEC--
Confidence 578999988763 2333 234456889999999976 666652 2337888898
Q ss_pred ccchhhhhhhhcCCCCCCc-ceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004141 290 YKSEASELELKESSSEDLP-VVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
.+++ ...+ ..+...+....|+|||+.|+..+.+ ..|.+||+.+++....
T Consensus 162 ---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~-- 213 (402)
T 2aq5_A 162 ---------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----------KRVRVIEPRKGTVVAE-- 213 (402)
T ss_dssp ---------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----------SEEEEEETTTTEEEEE--
T ss_pred ---------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----------CcEEEEeCCCCceeee--
Confidence 4444 3455 4566778999999999999887755 3589999877553111
Q ss_pred ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE--EEec-CCCCCceeeEEeec
Q 004141 367 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL--LRIT-PAESNFSWSLLTLD 443 (771)
Q Consensus 367 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~--~~l~-~~~~~~~~~~~s~d 443 (771)
+... ... ..+..+.|+|||+.|+..........|..+|+.+++. .... .....+....|+++
T Consensus 214 -------~~~~-~~~-------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 214 -------KDRP-HEG-------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp -------EECS-SCS-------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred -------eccC-CCC-------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 0000 000 1135678999998555443223445677778877653 2222 22334566789999
Q ss_pred CCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 444 GDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 444 g~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++.++++.... ..|.+.++.++
T Consensus 279 ~~~l~~~g~~d---g~i~i~d~~~~ 300 (402)
T 2aq5_A 279 TNIVYLCGKGD---SSIRYFEITSE 300 (402)
T ss_dssp TTEEEEEETTC---SCEEEEEECSS
T ss_pred CCEEEEEEcCC---CeEEEEEecCC
Confidence 99887766422 35777776544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-10 Score=129.13 Aligned_cols=244 Identities=11% Similarity=0.044 Sum_probs=148.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCc----ceE-EEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQ----LEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~----~~~-~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+...+|+|++..+++....+ + .+.+|+ ... ..+ +...... +.+++|||||+.|+..
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D-~---~i~~W~~~~~~~~~~~~~~~~~~h~~~----------v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRD-K---SIILWKLTKDDKAYGVAQRRLTGHSHF----------VEDVVLSSDGQFALSG 448 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETT-S---EEEEEECCCSTTCSCEEEEEEECCSSC----------EEEEEECTTSSEEEEE
T ss_pred ceeEEEEecCCCCCEEEEEeCC-C---cEEEEEccCCCcccccccceecCCCCc----------EEEEEECCCCCEEEEE
Confidence 4578899999875544433322 2 455552 111 111 1111222 2689999999999988
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC--CCCCCccceEEEe
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWA 248 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~--~~~~~~~~~~~ws 248 (771)
+.+...+ .|+............+........|+++....+++..+..|.+||+.+.....+.. ......+..+.|+
T Consensus 449 s~Dg~v~--vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 449 SWDGELR--LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp ETTSEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred eCCCcEE--EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 7765433 34432222222223344444566788887777777788999999987765555420 1223357789999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCC
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpD 327 (771)
|++... +++++. .+..|.++|+ .+++ ...+..+...+.+..||||
T Consensus 527 ~~~~~~---~l~s~s--------------~d~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 527 PNTLQP---TIVSAS--------------WDKTVKVWNL-----------------SNCKLRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp SCSSSC---EEEEEE--------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCcc---eEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEeCC
Confidence 998420 344331 2346888888 4444 4556677778999999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
|+.|+..+.+. .|.+||+.+++....... ...+..++|+||+..|+..
T Consensus 573 g~~l~sg~~Dg-----------~i~iwd~~~~~~~~~~~~--------------------~~~v~~~~~sp~~~~l~~~- 620 (694)
T 3dm0_A 573 GSLCASGGKDG-----------VVLLWDLAEGKKLYSLEA--------------------NSVIHALCFSPNRYWLCAA- 620 (694)
T ss_dssp SSEEEEEETTS-----------BCEEEETTTTEEEECCBC--------------------SSCEEEEEECSSSSEEEEE-
T ss_pred CCEEEEEeCCC-----------eEEEEECCCCceEEEecC--------------------CCcEEEEEEcCCCcEEEEE-
Confidence 99988777553 588999877653211000 0123467899999855433
Q ss_pred eeCCeeEEEEEECCCCcEEE
Q 004141 408 IWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~ 427 (771)
. ++. |..+|+.+++...
T Consensus 621 ~-~~~--i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 621 T-EHG--IKIWDLESKSIVE 637 (694)
T ss_dssp E-TTE--EEEEETTTTEEEE
T ss_pred c-CCC--EEEEECCCCCChh
Confidence 2 333 6666888877543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=112.21 Aligned_cols=241 Identities=11% Similarity=0.044 Sum_probs=145.5
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc----ceEEEecCCcccccccCCCcccceeecCCCC-eEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~ 173 (771)
..+...+|||||++|+.....+ .-.+|.+. .+. ...+...... +..++|+|||+ .|+..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~--~v~iw~~~-~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~l~~~~~- 77 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDG--SLTVYKFD-IQAKNVDLLQSLRYKHP----------LLCCNFIDNTDLQIYVGTV- 77 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS--EEEEEEEE-TTTTEEEEEEEEECSSC----------EEEEEEEESSSEEEEEEET-
T ss_pred CcEEEEEEcCCCCEEEEEcCCC--eEEEEEeC-CCCccccceeeeecCCc----------eEEEEECCCCCcEEEEEcC-
Confidence 4588899999999998775432 22233332 333 2222222222 26899999999 8887643
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc-cCCceeeccCCCCCCccceEEEecCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
...|++||+ .+++...+.+......+..+.|+| ++
T Consensus 78 -------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~ 113 (342)
T 1yfq_A 78 -------------------------------------------QGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DD 113 (342)
T ss_dssp -------------------------------------------TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TT
T ss_pred -------------------------------------------CCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CC
Confidence 257999999 999887773211556788999999 77
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC---------CcceecCCCCcccccee
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED---------LPVVNLTESISSAFFPR 323 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---------~~~~~lt~~~~~~~~p~ 323 (771)
. |+..+ .+..|.++|+ .+ ++..........+....
T Consensus 114 ~----l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 114 K----LIAAS---------------WDGLIEVIDP-----------------RNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp E----EEEEE---------------TTSEEEEECH-----------------HHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred E----EEEEc---------------CCCeEEEEcc-----------------cccccccccccCCeeeEEeeCCceEEEE
Confidence 5 66554 3347888887 32 33222223556688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCC-CCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc-CCC
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGC 401 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~-Dg~ 401 (771)
|+|++ |+..+.+ ..|.+||+.+ +......... . ....+..++|+| |++
T Consensus 158 ~~~~~--l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~-------------~----~~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 158 TNSSR--LIVGMNN-----------SQVQWFRLPLCEDDNGTIEES-------------G----LKYQIRDVALLPKEQE 207 (342)
T ss_dssp ECSSE--EEEEEST-----------TEEEEEESSCCTTCCCEEEEC-------------S----CSSCEEEEEECSGGGC
T ss_pred ecCCc--EEEEeCC-----------CeEEEEECCccccccceeeec-------------C----CCCceeEEEECCCCCC
Confidence 99998 5554433 3588999876 4321100000 0 001245678999 998
Q ss_pred EEEEEeeeCCeeEEEEEECC-----CCcEEEecCCCC---------CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 402 TMLLSSIWGSSQVIISVNVS-----SGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~-----tg~~~~l~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.|+ +...++...||.++.. ......+..... .+....|+++++.|+....+ ..+++.++.+
T Consensus 208 ~l~-~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vwd~~~ 282 (342)
T 1yfq_A 208 GYA-CSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD----GIISCWNLQT 282 (342)
T ss_dssp EEE-EEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT----SCEEEEETTT
T ss_pred EEE-EEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC----ceEEEEcCcc
Confidence 654 4555677777766654 133344433321 45556788998877655432 3467766654
Q ss_pred c
Q 004141 468 K 468 (771)
Q Consensus 468 ~ 468 (771)
+
T Consensus 283 ~ 283 (342)
T 1yfq_A 283 R 283 (342)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=106.39 Aligned_cols=262 Identities=12% Similarity=0.131 Sum_probs=138.6
Q ss_pred cccceeEEEEEEeecCCCCccc-eeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC-C-c----ceEEE
Q 004141 67 ANKRKKFMLSTVISKENENSVT-FQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-S-Q----LEKEF 139 (771)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~-lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~-~-~----~~~~~ 139 (771)
.....+.+.++++..+...... +... .....+...+|||+|+.||..+... ...+|+- . . .....
T Consensus 29 s~~~D~~i~lw~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~ 100 (330)
T 2hes_X 29 TGSTDRKIKLVSVKYDDFTLIDVLDET---AHKKAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLL 100 (330)
T ss_dssp EEESSSCEEEEECSSSCCEEEEEECTT---CCCSCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEE
T ss_pred EEcCCCEEEEEEecCCCeEEEEEEecC---CccCCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeE
Confidence 3344566777776433211111 1111 0224588899999999998776543 3445521 1 0 11111
Q ss_pred ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCce
Q 004141 140 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 219 (771)
Q Consensus 140 ~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 219 (771)
..-.+..+ .+.+++|||||++|+..+.+ ..
T Consensus 101 ~~~~~h~~------~V~~v~~sp~g~~las~s~D--------------------------------------------~~ 130 (330)
T 2hes_X 101 AIIEGHEN------EVKGVAWSNDGYYLATCSRD--------------------------------------------KS 130 (330)
T ss_dssp EEEC----------CEEEEEECTTSCEEEEEETT--------------------------------------------SC
T ss_pred EEEcCCCC------cEEEEEECCCCCEEEEEeCC--------------------------------------------CE
Confidence 11111111 22689999999999886543 56
Q ss_pred EEEEEcc-CCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 220 LFVININ-SGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 220 l~v~d~~-~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
|.+||+. ++. ...+ ......+..+.|+||++. |+..+. +..|.++|+
T Consensus 131 v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s~---------------D~~i~iW~~------- 182 (330)
T 2hes_X 131 VWIWETDESGEEYECISVL--QEHSQDVKHVIWHPSEAL----LASSSY---------------DDTVRIWKD------- 182 (330)
T ss_dssp EEEEECCTTCCCCEEEEEE--CCCSSCEEEEEECSSSSE----EEEEET---------------TSCEEEEEE-------
T ss_pred EEEEeccCCCCCeEEEEEe--ccCCCceEEEEECCCCCE----EEEEcC---------------CCeEEEEEC-------
Confidence 8888884 322 2233 334456889999999987 776652 225666665
Q ss_pred hhhhhhcCCCCCC---cceecCCCCccccceeecCC--CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee
Q 004141 295 SELELKESSSEDL---PVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 369 (771)
Q Consensus 295 ~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpD--G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 369 (771)
..+ ....+..+...+....|+|+ +..|+..+.+. .|.+||+.++..... ...
T Consensus 183 ----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----------~v~iw~~~~~~~~~~--~~~ 239 (330)
T 2hes_X 183 ----------YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----------TVRVWKYMGDDEDDQ--QEW 239 (330)
T ss_dssp ----------ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----------CEEEEEEEEECTTSC--EEE
T ss_pred ----------CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----------eEEEEEecCCCcccc--cee
Confidence 222 23456667778889999999 66676665543 467777654322110 000
Q ss_pred eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE---e-cCCCC-CceeeEEee--
Q 004141 370 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR---I-TPAES-NFSWSLLTL-- 442 (771)
Q Consensus 370 ~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~---l-~~~~~-~~~~~~~s~-- 442 (771)
.....+ ++.+...+..++|++++ ++++...++...||.+. +++.+. . ..... .+....|++
T Consensus 240 ~~~~~~--------~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~~--~~~~~~~~~~~~~h~~~~v~~v~~~~~~ 307 (330)
T 2hes_X 240 VCEAIL--------PDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVVKWLELN 307 (330)
T ss_dssp EEEEEC--------CSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEEE--TTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred EEeeec--------ccccccceEEEEEcCCC--EEEEEeCCCEEEEEEcC--CCceEEEeccccccccceEEEEEEecCC
Confidence 011111 11111235567899765 44566667777777554 554322 2 12222 344456777
Q ss_pred cCCEEEE
Q 004141 443 DGDNIIA 449 (771)
Q Consensus 443 dg~~l~~ 449 (771)
+++.|+.
T Consensus 308 ~~~~las 314 (330)
T 2hes_X 308 GKTILAT 314 (330)
T ss_dssp --CCEEE
T ss_pred CceEEEE
Confidence 4554443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-09 Score=109.80 Aligned_cols=276 Identities=14% Similarity=0.104 Sum_probs=145.5
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 147 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 147 (771)
.++.|.+|++.......... ...+......+....|||||++|+...... ...+|. ..............
T Consensus 59 ~D~~i~vWd~~~~~~~~~~~-~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~-- 130 (340)
T 4aow_A 59 RDKTIIMWKLTRDETNYGIP-QRALRGHSHFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKD-- 130 (340)
T ss_dssp TTSCEEEEEECCSSSCSEEE-EEEECCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC--
T ss_pred CCCeEEEEECCCCCccccee-eEEEeCCCCCEEEEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCCc--
Confidence 44567777775443221100 011111225688899999999998766543 444552 22222222211111
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC-CCCCccCCCCCCcccccCCcCcc--cCCccCceEEEEE
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDKDCNSWKGQGDWEEDWGET--YAGKRQPSLFVIN 224 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~g~~--~~~~~~~~l~v~d 224 (771)
.....++|+++.|+..+.+.... .|+...... ......+........|.++.... +.+.....|.+||
T Consensus 131 -------~~~~~~~~~~~~l~s~s~d~~~~--~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d 201 (340)
T 4aow_A 131 -------VLSVAFSSDNRQIVSGSRDKTIK--LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201 (340)
T ss_dssp -------EEEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEE
T ss_pred -------eeEEEEeecCccceeecCCCeEE--EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEE
Confidence 14778999999998877654322 122110000 00011111122223344432222 2334567899999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 202 ~~~~~~~~~~-~~h~~~v~~~~~s~~~~~----l~s~s---------------~Dg~i~iwd~----------------- 244 (340)
T 4aow_A 202 LANCKLKTNH-IGHTGYLNTVTVSPDGSL----CASGG---------------KDGQAMLWDL----------------- 244 (340)
T ss_dssp TTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTCEEEEEET-----------------
T ss_pred CCCCceeeEe-cCCCCcEEEEEECCCCCE----EEEEe---------------CCCeEEEEEe-----------------
Confidence 9988765542 334456788999999996 76654 3347888887
Q ss_pred CCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCc
Q 004141 305 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 384 (771)
Q Consensus 305 ~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 384 (771)
.+.+..........+....|+|++..++ .+.+ ..|.+||+.++......... .. ...+.
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~d-----------~~i~iwd~~~~~~~~~~~~~--~~-------~~~~~ 303 (340)
T 4aow_A 245 NEGKHLYTLDGGDIINALCFSPNRYWLC-AATG-----------PSIKIWDLEGKIIVDELKQE--VI-------STSSK 303 (340)
T ss_dssp TTTEEEEEEECSSCEEEEEECSSSSEEE-EEET-----------TEEEEEETTTTEEEEEECCC----------------
T ss_pred ccCceeeeecCCceEEeeecCCCCceee-ccCC-----------CEEEEEECCCCeEEEecccc--ce-------eeecc
Confidence 4444433333445678889999987554 3322 34888888765431110000 00 00000
Q ss_pred ccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 385 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 385 g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.....+..++|+|||+.| ++...++...||. +.+|+
T Consensus 304 -~h~~~v~~l~~s~dg~~l-~sgs~Dg~v~iW~--~~tGt 339 (340)
T 4aow_A 304 -AEPPQCTSLAWSADGQTL-FAGYTDNLVRVWQ--VTIGT 339 (340)
T ss_dssp -CCCCCEEEEEECTTSSEE-EEEETTSCEEEEE--EEC--
T ss_pred -CCCCCEEEEEECCCCCEE-EEEeCCCEEEEEe--CCCcC
Confidence 011234567899999865 5566667666765 44664
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=106.65 Aligned_cols=275 Identities=7% Similarity=-0.092 Sum_probs=151.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCC--ccceeecCCccccccceEEEeCCCCC-eEEEEecCCCCCCeE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN--SVTFQWAPFPVEMTGASAVVPSPSGS-KLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~~~~~~~~~SPdG~-~la~~~~~~~~~~~~ 126 (771)
++||..|+... ..+.+++|++...... ...+... ...+...+|+|+|+ +|+.....+ .
T Consensus 20 s~~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg-----~ 80 (342)
T 1yfq_A 20 IPSKSLLLITS---------WDGSLTVYKFDIQAKNVDLLQSLRY-----KHPLLCCNFIDNTDLQIYVGTVQG-----E 80 (342)
T ss_dssp EGGGTEEEEEE---------TTSEEEEEEEETTTTEEEEEEEEEC-----SSCEEEEEEEESSSEEEEEEETTS-----C
T ss_pred cCCCCEEEEEc---------CCCeEEEEEeCCCCccccceeeeec-----CCceEEEEECCCCCcEEEEEcCCC-----e
Confidence 45777766542 3356777777544311 2222212 25688899999999 887765432 3
Q ss_pred EEEe-c-CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 127 FELW-S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~-~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+.+| . .......+.. .... +.+..+.|+| ++.|+..+.
T Consensus 81 i~~wd~~~~~~~~~~~~-~~~~------~~v~~l~~~~-~~~l~s~~~-------------------------------- 120 (342)
T 1yfq_A 81 ILKVDLIGSPSFQALTN-NEAN------LGICRICKYG-DDKLIAASW-------------------------------- 120 (342)
T ss_dssp EEEECSSSSSSEEECBS-CCCC------SCEEEEEEET-TTEEEEEET--------------------------------
T ss_pred EEEEEeccCCceEeccc-cCCC------CceEEEEeCC-CCEEEEEcC--------------------------------
Confidence 4455 3 3322222211 0011 1236899999 888887543
Q ss_pred cCCcCcccCCccCceEEEEEccC---------CceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004141 205 EEDWGETYAGKRQPSLFVININS---------GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~---------~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
...|.+||+.+ ++.... ......+..+.|+|++ |+..+
T Consensus 121 ------------d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~------l~~~~------------- 167 (342)
T 1yfq_A 121 ------------DGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR------LIVGM------------- 167 (342)
T ss_dssp ------------TSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE------EEEEE-------------
T ss_pred ------------CCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc------EEEEe-------------
Confidence 25788999876 554433 3345567788999875 44443
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCC-Cc---ceecCCCCccccceeecC-CCCEEEEEecCCCCCCCCcccccc
Q 004141 276 YNRPCALYAVRVSLYKSEASELELKESSSED-LP---VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~---~~~lt~~~~~~~~p~~Sp-DG~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
....|+++|+ .. +. ..........+....|+| ||+.|+..+.+. .
T Consensus 168 --~d~~i~i~d~-----------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg-----------~ 217 (342)
T 1yfq_A 168 --NNSQVQWFRL-----------------PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG-----------R 217 (342)
T ss_dssp --STTEEEEEES-----------------SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS-----------E
T ss_pred --CCCeEEEEEC-----------------CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC-----------c
Confidence 2347888887 33 22 123334455688999999 999888777542 4
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcc-cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
|.+|++..+.......... .. ...... ..+ -....+..++|+||++.|+ +...++. |+.+|+.+++.....
T Consensus 218 i~i~~~~~~~~~~~~~~~~-~~---~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~--i~vwd~~~~~~~~~~ 289 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRF-AF---RCHRLN-LKDTNLAYPVNSIEFSPRHKFLY-TAGSDGI--ISCWNLQTRKKIKNF 289 (342)
T ss_dssp EEEEECCTTCCSTTCTTCE-EE---ECCCCC-TTCCSSCCCEEEEEECTTTCCEE-EEETTSC--EEEEETTTTEEEEEC
T ss_pred EEEEEEcCCCcccccccce-ee---eccccc-ccccccceeEEEEEEcCCCCEEE-EecCCce--EEEEcCccHhHhhhh
Confidence 6677766541000000000 00 000000 000 0011345678999998665 4444444 555688888765544
Q ss_pred CCC-CCceeeEEeecCCEEEEEEeCCC
Q 004141 430 PAE-SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 430 ~~~-~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
... .. ....+.++++.|+....+..
T Consensus 290 ~~~h~~-~v~~~~~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 AKFNED-SVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp CCCSSS-EEEEEEECSSEEEEEEECTH
T ss_pred hcccCC-CceEecCCCCeEEEEecCCc
Confidence 432 21 12223388888877765543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-09 Score=115.63 Aligned_cols=274 Identities=12% Similarity=0.045 Sum_probs=155.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc------ceEEEec-CCcccccccCCCcccceeecCC----C-
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ------LEKEFHV-PQTVHGSVYADGWFEGISWNSD----E- 164 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~------~~~~~~~-~~~~~g~~~~~~~~~~~~wSpD----g- 164 (771)
..+...+|+| +.|+..+..+ .+.+| ..+. ....+.. ... +.++.|+|| |
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFVHKSG----------LHHVDVLQAIERDAF 79 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEECCTTC----------EEEEEEEEEEETTTE
T ss_pred cCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEecCCCc----------EEEEEEecccccCCc
Confidence 4578899999 6776655432 44455 3333 2222221 222 268999999 9
Q ss_pred --CeEEEEecCCCCCCCCccCCCCCC-----CCCCccC-----CCCCCccccc----CCcCc-ccCCccCceEEEEEccC
Q 004141 165 --TLIAYVAEEPSPSKPTFSLGSTKG-----GSSDKDC-----NSWKGQGDWE----EDWGE-TYAGKRQPSLFVININS 227 (771)
Q Consensus 165 --~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~----~d~g~-~~~~~~~~~l~v~d~~~ 227 (771)
+.|+..+.+.... .|+...... ......+ ........|. ++... .+++.....|++||+.+
T Consensus 80 ~~~~l~s~~~dg~i~--iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 80 ELCLVATTSFSGDLL--FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEEEETTSCEE--EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cccEEEEEcCCCCEE--EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9888877655332 233211111 1111112 1333456688 77666 66777788999999987
Q ss_pred ------Ccee------eccC-----CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccc
Q 004141 228 ------GEVQ------AVKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 290 (771)
Q Consensus 228 ------~~~~------~l~~-----~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 290 (771)
++.. .+.+ ......+..+.|+||| . |+..+ .+..|+++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----l~~~~---------------~dg~i~i~d~--- 214 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L----IATGF---------------NNGTVQISEL--- 214 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E----EEEEC---------------TTSEEEEEET---
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e----EEEEe---------------CCCcEEEEEC---
Confidence 4432 2211 1234467889999999 8 88776 3347888998
Q ss_pred cchhhhhhhhcCCCCCCcc-eecCC---C---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 291 KSEASELELKESSSEDLPV-VNLTE---S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~-~~lt~---~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
.+++. ..+.. + ...+....|+|||+.|+..+.+. ....|.+||+.+++...
T Consensus 215 --------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------~~g~i~i~d~~~~~~~~ 272 (397)
T 1sq9_A 215 --------------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIG 272 (397)
T ss_dssp --------------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEE
T ss_pred --------------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------CCceEEEEECCCCcccc
Confidence 44443 34444 4 66788999999999988776541 11468999988765321
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC-------C-----
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-------A----- 431 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~-------~----- 431 (771)
............ -..+ .....+..++|+||++.|+ +...++ .|..+|+.+++...... .
T Consensus 273 ~~~~~~~~~~~~----~~~~--~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 273 SLSVPTHSSQAS----LGEF--AHSSWVMSLSFNDSGETLC-SAGWDG--KLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp EECBC------------CCB--SBSSCEEEEEECSSSSEEE-EEETTS--EEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred eeccCccccccc----cccc--ccCCcEEEEEECCCCCEEE-EEeCCC--eEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 111100000000 0000 0112345788999999664 444444 45556887777554433 2
Q ss_pred ----------CCCceeeEEeecCC
Q 004141 432 ----------ESNFSWSLLTLDGD 445 (771)
Q Consensus 432 ----------~~~~~~~~~s~dg~ 445 (771)
...+....|+++++
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTT
T ss_pred ccccccccccCCceeEEEeccccc
Confidence 34456678888883
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.8e-09 Score=105.56 Aligned_cols=252 Identities=14% Similarity=0.030 Sum_probs=146.5
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
....|+|+|+|+.|+++.... ..++.++..+. .+........ ..++.|+|||+.++.. .
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~---~~i~~~~~~~~-~~~~~~~~~~---------~~~l~~~~dg~l~v~~--~------ 87 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ---NRTWAWSDDGQ-LSPEMHPSHH---------QNGHCLNKQGHLIACS--H------ 87 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG---TEEEEEETTSC-EEEEESSCSS---------EEEEEECTTCCEEEEE--T------
T ss_pred cccCCeEeCCCCEEEEEeCCC---CEEEEEECCCC-eEEEECCCCC---------cceeeECCCCcEEEEe--c------
Confidence 356899999999887776533 35777773333 3333322211 1588999999844331 1
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCcc
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~ 256 (771)
....|+++|..+++.+.+..... ...+..++++|||+
T Consensus 88 ------------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 127 (296)
T 3e5z_A 88 ------------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS---- 127 (296)
T ss_dssp ------------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC----
T ss_pred ------------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC----
Confidence 22578999998887766621111 12356789999997
Q ss_pred EEEEEeecCcce--eeeeee-eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEE
Q 004141 257 YLVFVGWSSETR--KLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 257 ~l~~~~~~~~~~--~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f 333 (771)
|+++....+.. ..+... .......||.++. + ++.+.+.........++|||||+.| +
T Consensus 128 -l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~gi~~s~dg~~l-v 187 (296)
T 3e5z_A 128 -LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------------D-GTLSAPIRDRVKPNGLAFLPSGNLL-V 187 (296)
T ss_dssp -EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------------T-SCEEEEECCCSSEEEEEECTTSCEE-E
T ss_pred -EEEECCccccccccccccccccCCCcEEEEECC-----------------C-CCEEEeecCCCCCccEEECCCCCEE-E
Confidence 66652100000 000000 0011347999986 4 5566665555556789999999988 5
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
..... ..|+++++...+. +... ..++ .. .. ..+..+++++||+ |+++. ..
T Consensus 188 ~~~~~----------~~i~~~~~~~~g~--~~~~----~~~~-~~-~~-------~~p~~i~~d~~G~-l~v~~----~~ 237 (296)
T 3e5z_A 188 SDTGD----------NATHRYCLNARGE--TEYQ----GVHF-TV-EP-------GKTDGLRVDAGGL-IWASA----GD 237 (296)
T ss_dssp EETTT----------TEEEEEEECSSSC--EEEE----EEEE-CC-SS-------SCCCSEEEBTTSC-EEEEE----TT
T ss_pred EeCCC----------CeEEEEEECCCCc--CcCC----CeEe-eC-CC-------CCCCeEEECCCCC-EEEEc----CC
Confidence 55432 4689998863221 1000 0111 00 01 1235678999997 55554 24
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEE-eecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 414 VIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~-s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.|++++.++..+..+..... .....| +++++.|+++..+ .|++++..+.
T Consensus 238 ~v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 238 GVHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp EEEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred eEEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 68888987555566655444 555677 4788888876642 6888776543
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-10 Score=112.30 Aligned_cols=105 Identities=15% Similarity=0.079 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCCCC-CcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 539 LIVVLHGGPHSVSL-SSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HGg~~~~~~-~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
.||++||.+.+... ..|...+..|++. ||.|+++|+ | +|.+..... .+.....+++...++.+...... .
T Consensus 7 pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G---~g~s~~~~~--~~~~~~~~~~~~~~~~l~~~~~l-~ 79 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-G---KTLREDVEN--SFFLNVNSQVTTVCQILAKDPKL-Q 79 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-S---SSHHHHHHH--HHHSCHHHHHHHHHHHHHSCGGG-T
T ss_pred cEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-C---CCCcccccc--ccccCHHHHHHHHHHHHHhhhhc-c
Confidence 48999997655322 4688888888765 889999997 7 554321000 00011123333334444322111 2
Q ss_pred CeEEEEEcChhHHHHHHHHhhCCCc-eeEEEecCCc
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNPL 650 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~p~~-~~~~v~~~p~ 650 (771)
+++.|+||||||.++..++.++|+. ++.+|+.++.
T Consensus 80 ~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~p 115 (279)
T 1ei9_A 80 QGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGGQ 115 (279)
T ss_dssp TCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESCC
T ss_pred CCEEEEEECHHHHHHHHHHHHcCCcccceEEEecCc
Confidence 6899999999999999999999984 9999877653
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.1e-11 Score=132.74 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=89.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch--HHHH-HHH-HCCcEEEEECCCCCC-CCC--hhhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FLS-SVGYSLLIVNYRGSL-GFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~--~~~~-~la-~~G~~Vv~~d~rG~~-~~g--~~~~~ 586 (771)
+.|.+.+ .+|.|......++.|+||++|||++...... +. ..+. .++ ..|++|+.+|||... ++. .....
T Consensus 102 sedcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 179 (544)
T 1thg_A 102 NEDCLYL--NVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEE--EEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEE--EEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccc
Confidence 4455555 5788875444567899999999987654432 21 1222 222 358999999999643 111 00001
Q ss_pred cCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 004141 587 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~ 651 (771)
.. .+...+.|+.++++|+.++ ...|++||.|+|+|+||.+++.++... ..+|+++|+.+|..
T Consensus 180 ~~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~ 252 (544)
T 1thg_A 180 EG---NTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp HT---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred cC---CCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccc
Confidence 11 2334488999999999886 247999999999999999998877642 45799999999854
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.5e-10 Score=118.64 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=144.9
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcc---eEEEec
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL---EKEFHV 141 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 141 (771)
+......+.+.+|++.... ....+... ...+...+|||||++||..... +...+|.+...... ..+...
T Consensus 81 l~s~s~D~~v~iWd~~~~~-~~~~~~~h-----~~~v~~~~~s~~g~~las~~~d--~~v~iw~~~~~~~~~~~~~~~~~ 152 (380)
T 3iz6_a 81 IVSASQDGRLIVWNALTSQ-KTHAIKLH-----CPWVMECAFAPNGQSVACGGLD--SACSIFNLSSQADRDGNMPVSRV 152 (380)
T ss_dssp EEEEETTSEEEEEETTTTE-EEEEEECC-----CTTCCCCEECTTSSEEEECCSS--SCCEEEECCCCSSCCCSSTTCCB
T ss_pred EEEEeCCCeEEEEECCCCc-cceEEecC-----CCCEEEEEECCCCCEEEEeeCC--CcEEEEECCCCccccCCccceee
Confidence 3333455677777763321 12222211 2446778999999998765432 34445544321100 000011
Q ss_pred CCcccccccCCCcccceeecCCCC-eEEEEecCCCCCCCCccCCCCCCCCC-----CccCCCCCCcccccC-CcCcccCC
Q 004141 142 PQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLGSTKGGSS-----DKDCNSWKGQGDWEE-DWGETYAG 214 (771)
Q Consensus 142 ~~~~~g~~~~~~~~~~~~wSpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-d~g~~~~~ 214 (771)
-.+..+ ......|+|++. .|+..+.+...+ .|+......... ...+........+.+ +....+++
T Consensus 153 ~~gh~~------~v~~~~~~~~~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 153 LTGHKG------YASSCQYVPDQETRLITGSGDQTCV--LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp CCCCSS------CCCCCBCCSSSSSCEEEECTTSCEE--EECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred ccCCCc------ceEEEEEecCCCCEEEEECCCCcEE--EEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 111111 225788999754 566665554432 333222111000 011112222233433 33334455
Q ss_pred ccCceEEEEEccC-Cc-eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 215 KRQPSLFVININS-GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 215 ~~~~~l~v~d~~~-~~-~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..+..|.+||+.. ++ ...+ ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 225 s~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s---------------~D~~i~lwd~----- 278 (380)
T 3iz6_a 225 SCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQR----FGTGS---------------DDGTCRLFDM----- 278 (380)
T ss_dssp ETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSE----EEEEC---------------SSSCEEEEET-----
T ss_pred ECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCe----EEEEc---------------CCCeEEEEEC-----
Confidence 5678999999863 33 3444 344557889999999997 77665 3346788887
Q ss_pred hhhhhhhhcCCCCCCcce-ecCCC-------CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC
Q 004141 293 EASELELKESSSEDLPVV-NLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~-~lt~~-------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
.++... .+... ...+.+.+|||||+.|+..+.+ ..|++||+.+++....
T Consensus 279 ------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------g~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 279 ------------RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN-----------GDCYVWDTLLAEMVLN 335 (380)
T ss_dssp ------------TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT-----------SCEEEEETTTCCEEEE
T ss_pred ------------CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC-----------CCEEEEECCCCceEEE
Confidence 444332 22211 1236789999999988765544 3589999876553110
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
. ... ...+...+..++|+|||+.| ++.+.++...||.+
T Consensus 336 ~-------~~~--------~~~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 336 L-------GTL--------QNSHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAF 373 (380)
T ss_dssp E-------CCS--------CSSCCCCCCEEEECSSSSEE-EEECTTSCEEEEEC
T ss_pred E-------ecc--------cCCCCCceEEEEECCCCCEE-EEeeCCCCEEEEec
Confidence 0 000 00011245678899999955 56667777777743
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-11 Score=131.96 Aligned_cols=133 Identities=23% Similarity=0.249 Sum_probs=93.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCC-CCCCCChhhhhcCCCCcc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~r-G~~~~g~~~~~~~~~~~~ 593 (771)
+.|++.+ .+|.|......++.|+||++|||++...............+.|++|+.+||| |..++......... +
T Consensus 95 ~edcl~l--nv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~---~ 169 (542)
T 2h7c_A 95 SEDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSR---G 169 (542)
T ss_dssp ESCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC---C
T ss_pred CCCCcEE--EEEECCCCCCCCCCCEEEEECCCcccCCCccccCHHHHHhcCCEEEEecCCCCccccCCCCCcccCc---c
Confidence 3455555 5788976544578999999999987654432211122334579999999999 43233222111122 2
Q ss_pred ccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCccc
Q 004141 594 SQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 652 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~~ 652 (771)
...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++.. .+.+|+++|+.+|...
T Consensus 170 n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~ 233 (542)
T 2h7c_A 170 NWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 233 (542)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCcc
Confidence 33478999999999875 34799999999999999999988875 3678999999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-09 Score=116.01 Aligned_cols=236 Identities=8% Similarity=-0.029 Sum_probs=139.7
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.+||+|+.+ +.+.. ...+.+++ ..++....+...... ..+.|||||++|+..+.+
T Consensus 144 ~~~p~~~~~--vs~~~--d~~V~v~D~~t~~~~~~i~~g~~~----------~~v~~spdg~~l~v~~~d---------- 199 (543)
T 1nir_A 144 DLDLPNLFS--VTLRD--AGQIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIGRD---------- 199 (543)
T ss_dssp CCCGGGEEE--EEEGG--GTEEEEEETTTCCEEEEEECSTTE----------EEEEECTTSCEEEEEETT----------
T ss_pred ccCCCCEEE--EEEcC--CCeEEEEECCCceEEEEEecCccc----------ceEEECCCCCEEEEECCC----------
Confidence 478988533 33332 22455455 445555555433334 388899999988775321
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc--cCCceeeccCCCCCCccceEEEec----CCCCCccE
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAP----LNEGLHQY 257 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~~~~~~l~~~~~~~~~~~~~wsp----Dg~~~~~~ 257 (771)
..|.+||+ .++++... ++....+..++||| ||+.
T Consensus 200 ----------------------------------~~V~v~D~~~~t~~~~~~--i~~g~~p~~va~sp~~~~dg~~---- 239 (543)
T 1nir_A 200 ----------------------------------ARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYEDRY---- 239 (543)
T ss_dssp ----------------------------------SEEEEEETTSSSCEEEEE--EECCSEEEEEEECCSTTCTTTE----
T ss_pred ----------------------------------CeEEEEECcCCCCcEEEE--EecCCCcceEEeCCCcCCCCCE----
Confidence 57999999 67765443 33444678899999 9996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce-ecCCC-----------Cccccceeec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-----------ISSAFFPRFS 325 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~-----------~~~~~~p~~S 325 (771)
|+.... ....|.++|. .+++.. .+... ...+....+|
T Consensus 240 l~v~~~--------------~~~~v~v~D~-----------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 240 TIAGAY--------------WPPQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp EEEEEE--------------ESSEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred EEEEEc--------------cCCeEEEEec-----------------cccccceeecccCcccCccccccCCceEEEEEC
Confidence 655442 1236778887 555432 22211 1145678999
Q ss_pred CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 326 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 326 pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
|||+.+++.... ..+|+++|..+.+...++ .++ .+. .+....|+|||++++.
T Consensus 289 ~~~~~~~vs~~~----------~g~i~vvd~~~~~~l~~~-----~i~------~~~-------~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 289 HEHPEFIVNVKE----------TGKVLLVNYKDIDNLTVT-----SIG------AAP-------FLHDGGWDSSHRYFMT 340 (543)
T ss_dssp SSSSEEEEEETT----------TTEEEEEECTTSSSCEEE-----EEE------CCS-------SCCCEEECTTSCEEEE
T ss_pred CCCCEEEEEECC----------CCeEEEEEecCCCcceeE-----Eec------cCc-------CccCceECCCCCEEEE
Confidence 999987665533 257999998775432110 000 011 2456789999998876
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCC-C---CceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITPAE-S---NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~-~---~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+....+ .|..+|..++++....... . ......++++++.++++.+.. -..|.+.+..+
T Consensus 341 a~~~~~--~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG--DGSISLIGTDP 402 (543)
T ss_dssp EEGGGT--EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EecCCC--eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC--CceEEEEEeCC
Confidence 655444 4555899999877654321 1 111223467777776655422 23466666554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-09 Score=121.25 Aligned_cols=241 Identities=10% Similarity=0.049 Sum_probs=146.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC----cceEEEecCCcccccccCCCcccceeecC--CCCeEEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS----QLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~ 170 (771)
+.+...+|||||++||+..+ + ...+| ..+ ...+.+... .+. .+.+++||| ||++|+..
T Consensus 19 ~~v~~~~~spdg~~l~~~~~---~---~v~v~~~~~~~~~~~~~~~~~~h---~~~-----~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCG---K---SAFVRCLDDGDSKVPPVVQFTGH---GSS-----VVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp TCCCCCEEETTTTEEEEEET---T---EEEEEECCSSCCSSCSEEEECTT---TTS-----CEEEEEECSSTTCCEEEEE
T ss_pred CceeEEEECCCCCEEEEecC---C---eEEEEECCCCCCccccceEEecC---CCc-----eEEEEEECcCCCCCEEEEe
Confidence 45788999999999999862 2 34444 333 333333221 111 026899999 99999886
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC--------ce-eeccCCCCCCc
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--------EV-QAVKGIPKSLS 241 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~--------~~-~~l~~~~~~~~ 241 (771)
+. ...|.+||+.++ +. ..+ ......
T Consensus 85 ~~--------------------------------------------dg~v~vw~~~~~~~~~~~~~~~~~~~--~~~~~~ 118 (615)
T 1pgu_A 85 DE--------------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEF--QVLAGP 118 (615)
T ss_dssp ET--------------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEE--ECCSSC
T ss_pred cC--------------------------------------------CCEEEEEeCCCCcccccccccccchh--hccccc
Confidence 43 257899998654 22 223 234456
Q ss_pred cceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccc
Q 004141 242 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 321 (771)
Q Consensus 242 ~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~ 321 (771)
+..+.|+|||+. |+..+...+ ....|+.+|. +.....+..+...+..
T Consensus 119 v~~~~~s~~~~~----l~~~~~~~~-----------~~~~v~~~d~------------------~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 119 ISDISWDFEGRR----LCVVGEGRD-----------NFGVFISWDS------------------GNSLGEVSGHSQRINA 165 (615)
T ss_dssp EEEEEECTTSSE----EEEEECCSS-----------CSEEEEETTT------------------CCEEEECCSCSSCEEE
T ss_pred EEEEEEeCCCCE----EEEeccCCC-----------CccEEEEEEC------------------CCcceeeecCCccEEE
Confidence 889999999998 887763211 1236777763 3445666677778899
Q ss_pred eeecCCCCE-EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC-
Q 004141 322 PRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD- 399 (771)
Q Consensus 322 p~~SpDG~~-l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~D- 399 (771)
..|+|||+. |+..+.+ ..|.+||+.+++.... +....... ..+..++|+||
T Consensus 166 ~~~~~~~~~~l~~~~~d-----------~~v~vwd~~~~~~~~~----------~~~~~~~~------~~v~~~~~~~~~ 218 (615)
T 1pgu_A 166 CHLKQSRPMRSMTVGDD-----------GSVVFYQGPPFKFSAS----------DRTHHKQG------SFVRDVEFSPDS 218 (615)
T ss_dssp EEECSSSSCEEEEEETT-----------TEEEEEETTTBEEEEE----------ECSSSCTT------CCEEEEEECSTT
T ss_pred EEECCCCCcEEEEEeCC-----------CcEEEEeCCCcceeee----------ecccCCCC------ceEEEEEECCCC
Confidence 999999984 5444433 3588888766443111 10000000 02456789999
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEec-----CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 400 GCTMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~-----~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
++.|+ +...++. |..+|+.+++..... .....+....|+ +++.++....+ ..+.+.++.+
T Consensus 219 ~~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~ 283 (615)
T 1pgu_A 219 GEFVI-TVGSDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTT 283 (615)
T ss_dssp CCEEE-EEETTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTT
T ss_pred CCEEE-EEeCCCe--EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCC
Confidence 88664 4444444 555688888766554 333445566778 88877665532 3466666543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-08 Score=104.27 Aligned_cols=251 Identities=10% Similarity=0.023 Sum_probs=144.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...|+|+|||+.|+|+.... ..++.+..++....+....... .++.|+|||+.++.. .
T Consensus 47 ~egp~~~~~g~~l~~~d~~~---~~i~~~~~~g~~~~~~~~~~~~----------~gl~~d~dG~l~v~~--~------- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG---RRVLGWREDGTVDVLLDATAFT----------NGNAVDAQQRLVHCE--H------- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT---TEEEEEETTSCEEEEEESCSCE----------EEEEECTTSCEEEEE--T-------
T ss_pred ccCCeEeCCCCEEEEEECCC---CEEEEEeCCCCEEEEeCCCCcc----------ceeeECCCCCEEEEE--C-------
Confidence 45799999999998875433 3466666544443333322222 588999999844332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCccE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~~ 257 (771)
....|++++.+ ++.+.+..... ...+..++++|||+
T Consensus 105 -----------------------------------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~----- 143 (305)
T 3dr2_A 105 -----------------------------------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA----- 143 (305)
T ss_dssp -----------------------------------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-----
T ss_pred -----------------------------------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-----
Confidence 12467778776 55555421111 12356789999997
Q ss_pred EEEEeecCcc--eeeeeee-eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004141 258 LVFVGWSSET--RKLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~--~~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+....+. ...+... .......||++|. ++++.+.+. .......++|||||+.|++.
T Consensus 144 l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~-----------------~~g~~~~~~-~~~~p~gl~~spdg~~lyv~ 205 (305)
T 3dr2_A 144 IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP-----------------DGSPLQRMA-DLDHPNGLAFSPDEQTLYVS 205 (305)
T ss_dssp EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS-----------------SSCCCEEEE-EESSEEEEEECTTSSEEEEE
T ss_pred EEEeCcCCCccccccccccccccCCCeEEEEcC-----------------CCCcEEEEe-cCCCCcceEEcCCCCEEEEE
Confidence 7775210000 0000000 0012347999997 677777665 44445678999999998877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
..... ......|+++++.+++ +.. ....... .. .....+++.+||+ |+++. . ..
T Consensus 206 ~~~~~-----~~~~~~i~~~~~~~~~---l~~-~~~~~~~-----~~-------~~pdgi~~d~~G~-lwv~~-~---~g 259 (305)
T 3dr2_A 206 QTPEQ-----GHGSVEITAFAWRDGA---LHD-RRHFASV-----PD-------GLPDGFCVDRGGW-LWSSS-G---TG 259 (305)
T ss_dssp ECCC--------CCCEEEEEEEETTE---EEE-EEEEECC-----SS-------SCCCSEEECTTSC-EEECC-S---SE
T ss_pred ecCCc-----CCCCCEEEEEEecCCC---ccC-CeEEEEC-----CC-------CCCCeEEECCCCC-EEEec-C---Cc
Confidence 65420 0112569999987644 111 1111110 00 1234667889998 65544 2 24
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
|++++.++..+..+..... .....|+++++.|+++.+. .||+++
T Consensus 260 v~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~ 303 (305)
T 3dr2_A 260 VCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLP 303 (305)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEE
T ss_pred EEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEE
Confidence 8889986666666654443 4567888888888877653 566654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-07 Score=101.73 Aligned_cols=259 Identities=13% Similarity=0.079 Sum_probs=142.7
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCC---CeEEEEec
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg---~~la~~~~ 172 (771)
..+...+|+| +++.++.....+ .+.+| ..++........... ..+.|+|++ ..|+...
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~- 163 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFNFEETV----------YSHHMSPVSTKHCLVAVGT- 163 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEECSSCE----------EEEEECSSCSSCCEEEEEE-
T ss_pred CcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceeccCCCce----------eeeEeecCCCCCcEEEEEc-
Confidence 5688999999 666776654433 45566 344444444433333 477788854 4666643
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
....|.+||+.+++..... ......+..+.|+|+++
T Consensus 164 -------------------------------------------~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 164 -------------------------------------------RGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD 199 (408)
T ss_dssp -------------------------------------------SSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred -------------------------------------------CCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence 2357899999887654431 33455688999999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. +++++. .+..|.++|+......-..+..............+..+...+....|+|||+.|+
T Consensus 200 ~----ll~~~~--------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 200 Y----ILATAS--------------ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp T----EEEEEE--------------TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred c----EEEEEc--------------CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 8 777663 2236777776210000000000000000000111134555688899999999998
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 411 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~Dg~~l~~~~~~~~ 411 (771)
..+.+. .|.+||+.+++.......... .... ......+. ..+..+++.. .++
T Consensus 262 ~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~~~~~-~~~ 314 (408)
T 4a11_B 262 TVGTDN-----------RMRLWNSSNGENTLVNYGKVC---------NNSK------KGLKFTVSCGCSSEFVFVP-YGS 314 (408)
T ss_dssp EEETTS-----------CEEEEETTTCCBCCCCCCCCC---------CCCS------SCCCCEECCSSSSCEEEEE-ETT
T ss_pred EecCCC-----------eEEEEECCCCccceecccccc---------cccc------ccceeEEecCCCceEEEEe-cCC
Confidence 777553 489999988765332211100 0000 00111222 2233344443 344
Q ss_pred eeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 412 SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.|..+|+.+++...... ....+....|+++++.|+....+ ..+.+.++...
T Consensus 315 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 366 (408)
T 4a11_B 315 --TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD----CNILAWVPSLY 366 (408)
T ss_dssp --EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETT----SCEEEEEECC-
T ss_pred --EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCC----CeEEEEeCCCC
Confidence 56666888887665443 44456667899999887755432 34666666543
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-11 Score=127.49 Aligned_cols=112 Identities=12% Similarity=0.044 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||.+.+. ...|.. .+..|++ .||.|+++|+||.+ .+...... .......+|+.+.++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g---~s~~~~~~-~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGS---KAQYSQAS-QNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHH---TSCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECcccc---CccchhhH-hhHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999976653 235655 6667766 79999999999843 32110000 0001124678888888876544
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|+.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 567899999999999999999999999999999888764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-09 Score=111.03 Aligned_cols=239 Identities=11% Similarity=0.101 Sum_probs=140.7
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCC--CCeEEEEecCCCCCC
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESP 124 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~ 124 (771)
..++||+.|+... ..+.+.+|++........ .+.. ....+...+|+|+ |++|+.....+
T Consensus 18 ~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg---- 79 (379)
T 3jrp_A 18 VLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTG-----HEGPVWRVDWAHPKFGTILASCSYDG---- 79 (379)
T ss_dssp EECSSSSEEEEEE---------TTSCEEEEEEETTEEEEEEEECC-----CSSCEEEEEECCGGGCSEEEEEETTS----
T ss_pred EEcCCCCEEEEEE---------CCCcEEEEecCCCcceeeeEecC-----CCCcEEEEEeCCCCCCCEEEEeccCC----
Confidence 3467888877653 224566666643222221 2211 2256888999988 88888765532
Q ss_pred eEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCC
Q 004141 125 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 200 (771)
Q Consensus 125 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (771)
.+.+| ..+....+..... ..+ .+..+.|+|+ |+.|+..+.
T Consensus 80 -~v~iwd~~~~~~~~~~~~~~-~~~------~v~~~~~~~~~~~~~l~~~~~---------------------------- 123 (379)
T 3jrp_A 80 -KVLIWKEENGRWSQIAVHAV-HSA------SVNSVQWAPHEYGPLLLVASS---------------------------- 123 (379)
T ss_dssp -CEEEEEEETTEEEEEEEECC-CSS------CEEEEEECCGGGCSEEEEEET----------------------------
T ss_pred -EEEEEEcCCCceeEeeeecC-CCc------ceEEEEeCCCCCCCEEEEecC----------------------------
Confidence 33444 2333222222211 111 2268999999 888888643
Q ss_pred cccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEec-------------CCCCCccEEEEEeec
Q 004141 201 QGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFVGWS 264 (771)
Q Consensus 201 ~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wsp-------------Dg~~~~~~l~~~~~~ 264 (771)
...|.+||+.++.. ..+ ......+..+.|+| |++. |+..+
T Consensus 124 ----------------d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-- 179 (379)
T 3jrp_A 124 ----------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG-- 179 (379)
T ss_dssp ----------------TSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC----------CTTCE----EEEEE--
T ss_pred ----------------CCcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCccccccccccCCCCCCE----EEEEe--
Confidence 25788999887632 223 23445678899999 5776 66554
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCccccceeecCC---CCEEEEEec
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPD---GKFLVFLSA 336 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpD---G~~l~f~~~ 336 (771)
.+..|+++|+ .++. ...+..+...+..++|+|| |+.|+..+.
T Consensus 180 -------------~dg~i~i~d~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 180 -------------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp -------------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred -------------CCCeEEEEEe-----------------cCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 2236777776 2222 2345556677899999999 788777665
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+. .|.+||+.++..... ..+... .. ....+..++|+|||+.|+.. ..++...+|
T Consensus 230 dg-----------~i~iwd~~~~~~~~~-------~~~~~~---~~----~~~~v~~~~~s~~g~~l~~~-~~dg~i~iw 283 (379)
T 3jrp_A 230 DR-----------TCIIWTQDNEQGPWK-------KTLLKE---EK----FPDVLWRASWSLSGNVLALS-GGDNKVTLW 283 (379)
T ss_dssp TS-----------CEEEEEESSTTSCCE-------EEESSS---SC----CSSCEEEEEECSSSCCEEEE-ESSSSEEEE
T ss_pred CC-----------EEEEEeCCCCCccce-------eeeecc---cc----CCCcEEEEEEcCCCCEEEEe-cCCCcEEEE
Confidence 53 488888877542110 000000 00 01134567899999976544 457777888
Q ss_pred EEEC
Q 004141 417 SVNV 420 (771)
Q Consensus 417 ~~d~ 420 (771)
.++.
T Consensus 284 ~~~~ 287 (379)
T 3jrp_A 284 KENL 287 (379)
T ss_dssp EEEE
T ss_pred eCCC
Confidence 7774
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.3e-11 Score=132.19 Aligned_cols=131 Identities=19% Similarity=0.205 Sum_probs=89.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-ch--HHHH-HH-HHCCcEEEEECCCCCC-CCC--hhhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSLA-FL-SSVGYSLLIVNYRGSL-GFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~--~~~~-~l-a~~G~~Vv~~d~rG~~-~~g--~~~~~ 586 (771)
+.|.+. ..+|.|......++.|+||++|||++...... +. ..+. .+ ...|++|+.+|||... ++. .+...
T Consensus 94 sedcl~--l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 171 (534)
T 1llf_A 94 SEDCLT--INVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCE--EEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeE--EEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc
Confidence 344544 45888975444567899999999987655432 21 1222 22 2468999999999632 111 11111
Q ss_pred cCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCc
Q 004141 587 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 650 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~ 650 (771)
.. .+...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++... +.+|+++|+.+|.
T Consensus 172 ~~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 172 EG---SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HT---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cC---CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 11 2334588999999999875 336999999999999999888776653 4679999999985
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-09 Score=115.95 Aligned_cols=266 Identities=15% Similarity=0.078 Sum_probs=150.7
Q ss_pred eeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCccccccc
Q 004141 71 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVY 150 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 150 (771)
.+.+++|++.++ +..++... ......+...+|||||++||..+... .+.+|+-...+.+..... ..+
T Consensus 124 d~tV~lWd~~tg--~~~~~~~~--~~~~~~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~~-h~~--- 190 (420)
T 4gga_A 124 DNSVYLWSASSG--DILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTS-HSA--- 190 (420)
T ss_dssp TTEEEEEETTTC--CEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECC-CSS---
T ss_pred CCEEEEEECCCC--CEEEEEEe--cCCCCcEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEeC-CCC---
Confidence 356777776432 33332211 11124588999999999998776543 456663222222222211 111
Q ss_pred CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004141 151 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 151 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
...++++|++.|+..+.+.... .|..... ........+........+.++......+.....+.+|+..+++
T Consensus 191 -----~v~~~s~~~~~l~sgs~d~~i~--~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 191 -----RVGSLSWNSYILSSGSRSGHIH--HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp -----CEEEEEEETTEEEEEETTSEEE--EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred -----ceEEEeeCCCEEEEEeCCCcee--EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccc
Confidence 1334566777777766544221 1111000 0000111122222334456665555556667889999998765
Q ss_pred eeec---cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC
Q 004141 230 VQAV---KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 306 (771)
Q Consensus 230 ~~~l---~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 306 (771)
.... ........+...+|+|++.. +++++-. ..+..|.++|+ .+
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~----~la~~~g------------s~D~~I~iwd~-----------------~t 310 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSN----VLATGGG------------TSDRHIRIWNV-----------------CS 310 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTT----EEEEEEC------------TTTCEEEEEET-----------------TT
T ss_pred ccceeeeeecccCCceeeeeeCCCccc----EEEEEee------------cCCCEEEEEeC-----------------Cc
Confidence 3211 00234456778999999998 8776421 12347888898 66
Q ss_pred CcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccc
Q 004141 307 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 386 (771)
Q Consensus 307 ~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~ 386 (771)
+...........+.+..|+|+++.|+..+... ...|++||+.+++......+
T Consensus 311 ~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~---------d~~I~iwd~~~~~~v~~l~g------------------- 362 (420)
T 4gga_A 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFA---------QNQLVIWKYPTMAKVAELKG------------------- 362 (420)
T ss_dssp TEEEEEEECSSCEEEEEEETTTTEEEEEECTT---------TCCEEEEETTTCCEEEEECC-------------------
T ss_pred cccceeeccccceeeeeecCCCCeEEEEEecC---------CCEEEEEECCCCcEEEEEcC-------------------
Confidence 66544444555678899999999998876432 24699999887654211111
Q ss_pred ccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 387 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 387 ~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
+...+..++|||||+.| ++...++...||.+
T Consensus 363 H~~~V~~l~~spdg~~l-~S~s~D~tvriWdv 393 (420)
T 4gga_A 363 HTSRVLSLTMSPDGATV-ASAAADETLRLWRC 393 (420)
T ss_dssp CSSCEEEEEECTTSSCE-EEEETTTEEEEECC
T ss_pred CCCCEEEEEEcCCCCEE-EEEecCCeEEEEEC
Confidence 11235577899999865 56667777777754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=8.9e-08 Score=101.03 Aligned_cols=121 Identities=7% Similarity=-0.027 Sum_probs=72.0
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc-cCC-CCCcccccCCCCCCccccC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC-AEG-DCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-~~f~g~~~~~~~~~~~s~D 399 (771)
..++|||+.++|.+.. ..++++|+.++....+. ...+... ... ...| .....++++||
T Consensus 205 ~~~~~~g~~~~~~~~~-----------~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p----~g~~~~a~~~d 264 (361)
T 2oiz_A 205 IAPALDKDKAHFVSYY-----------GNVYSADFSGDEVKVDG-----PWSLLNDEDKAKNWVP----GGYNLVGLHRA 264 (361)
T ss_dssp SCCEECSSEEEEEBTT-----------SEEEEEECSSSSCEEEE-----EEESCCHHHHHTTCEE----CCSSCEEEETT
T ss_pred EEecccCCEEEEEeCC-----------CeEEEEEecCCCceecc-----cccccCcccccccccc----CCeeEEEEecC
Confidence 4558999998887743 25899998765432110 0000000 000 0001 12234678999
Q ss_pred CCEEEEEeeeC--------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 400 GCTMLLSSIWG--------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 400 g~~l~~~~~~~--------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++++|+..... ....++.||++++++..-..... .....|++||+.|+.+. . ..|.+++..++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G----GNVNVYDISQP 335 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-S----SCEEEEECSSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-C----CeEEEEECCCC
Confidence 99888765411 23579999999988665433333 56679999999776433 2 66888876544
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.05 E-value=7.9e-09 Score=107.09 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=131.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~ 174 (771)
..+...+|||||++||..+... ...+|+ .+....+..+. +..+. +..++|+| +|+.|+..+.+
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~-gH~~~------V~~v~~~~~~~~~~l~s~s~D- 80 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLR-GHEGP------VWQVAWAHPMYGNILASCSYD- 80 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEE-CCSSC------EEEEEECCGGGSSCEEEEETT-
T ss_pred CeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEc-CCCcc------EEEEEeCCCCCCCEEEEEECC-
Confidence 4578899999999998776543 455552 22222222221 11122 26899987 48888876433
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC-
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD- 250 (771)
..|.+||+.+++. ..+ ......+..++|+||
T Consensus 81 -------------------------------------------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 81 -------------------------------------------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPHD 115 (316)
T ss_dssp -------------------------------------------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCTT
T ss_pred -------------------------------------------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCCC
Confidence 5688899887642 223 234456889999998
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-c---ceecCCCCccccceeec
Q 004141 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P---VVNLTESISSAFFPRFS 325 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~---~~~lt~~~~~~~~p~~S 325 (771)
|+. |+..+ .+..|.++|+ .++ . ...+..+...+....|+
T Consensus 116 ~g~~----lasgs---------------~D~~i~lwd~-----------------~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 116 YGLI----LACGS---------------SDGAISLLTY-----------------TGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp TCSC----EEEEC---------------SSSCEEEEEE-----------------CSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCcE----EEEEc---------------CCCCEEEEec-----------------CCCCCcceeeeeccccCCcceEEEc
Confidence 665 66554 2235677776 332 1 12333445567888999
Q ss_pred CCC-----------------CEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004141 326 PDG-----------------KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 326 pDG-----------------~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
|++ +.|+..+.+ ..|.+||+.+++... .... +.+ +.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----------~~v~lWd~~~~~~~~-------~~~~--------l~~-h~ 212 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCD-----------NLIKLWKEEEDGQWK-------EEQK--------LEA-HS 212 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTT-----------SBCCEEEECTTSCEE-------EEEC--------CBC-CS
T ss_pred cccCCccccccccccCccccceEEEecCC-----------CeEEEEEeCCCCccc-------eeee--------ccc-CC
Confidence 983 444433322 347777775432100 0000 010 11
Q ss_pred CCCCCCccccCC---CEEEEEeeeCCeeEEEEEECCC-Cc--EEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 389 SSILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSS-GE--LLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 389 ~~~~~~~~s~Dg---~~l~~~~~~~~~~~l~~~d~~t-g~--~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
..+..++|+|++ ..++++...++...||.++... ++ .+.+......+....|+|+++.|+....
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 134567899987 2356677777777777443210 11 1223222334556788999987765543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.9e-09 Score=105.60 Aligned_cols=242 Identities=11% Similarity=0.109 Sum_probs=137.9
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCCC--CCeEEEEecCCCCCCeE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~~ 126 (771)
++||++|+-.. ..+.+.++++.....+. ..+.. ..+.+...+|+|+ |+.||..+... .
T Consensus 18 s~~g~~las~s---------~D~~v~iw~~~~~~~~~~~~l~g-----H~~~V~~v~~s~~~~g~~l~s~s~D~-----~ 78 (297)
T 2pm7_B 18 DYYGKRMATCS---------SDKTIKIFEVEGETHKLIDTLTG-----HEGPVWRVDWAHPKFGTILASCSYDG-----K 78 (297)
T ss_dssp CTTSSEEEEEE---------TTSCEEEEEBCSSCBCCCEEECC-----CSSCEEEEEECCGGGCSEEEEEETTT-----E
T ss_pred CCCCCEEEEEe---------CCCEEEEEecCCCCcEEEEEEcc-----ccCCeEEEEecCCCcCCEEEEEcCCC-----E
Confidence 56888777543 33566776664332121 22221 2256888999874 88888766543 5
Q ss_pred EEEec--CCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 127 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+|+ .+....+.... ...+ .+.+++|+|+ |+.|+..+.
T Consensus 79 v~iWd~~~~~~~~~~~~~-~h~~------~v~~v~~~p~~~g~~l~s~s~------------------------------ 121 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHA-VHSA------SVNSVQWAPHEYGPMLLVASS------------------------------ 121 (297)
T ss_dssp EEEEEBSSSCBCCCEEEC-CCSS------CEEEEEECCGGGCSEEEEEET------------------------------
T ss_pred EEEEEcCCCceEEEEEee-cCCC------ceeEEEeCcCCCCcEEEEEEC------------------------------
Confidence 56662 22211221111 1111 2268999998 888877543
Q ss_pred cccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEEecCC-------------CCCccEEEEEeecCc
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLN-------------EGLHQYLVFVGWSSE 266 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wspDg-------------~~~~~~l~~~~~~~~ 266 (771)
...|.+||+.++. ...+ ......+..+.|+|++ +. |+..+
T Consensus 122 --------------d~~v~~wd~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~----l~sgs---- 177 (297)
T 2pm7_B 122 --------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG---- 177 (297)
T ss_dssp --------------TSEEEEEEBCSSSCBCCEEE--ECCSSCEEEEEECCCC------------CCE----EEEEE----
T ss_pred --------------CCcEEEEEecCCCceeeeee--ecccCccceEeecCCcccccccCCCCCCcce----EEEEc----
Confidence 2578888887653 2233 2334467788999984 33 44443
Q ss_pred ceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----ceecCCCCccccceeecCCC---CEEEEEecCC
Q 004141 267 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESISSAFFPRFSPDG---KFLVFLSAKS 338 (771)
Q Consensus 267 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~lt~~~~~~~~p~~SpDG---~~l~f~~~~~ 338 (771)
.+..|.++|+ .++. ...|..+...+...+||||+ ++|+..+.+.
T Consensus 178 -----------~D~~v~lwd~-----------------~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 178 -----------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp -----------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred -----------CCCcEEEEEE-----------------cCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 2235666666 2222 23566677789999999996 6777666553
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.++..... ..+.. ...++ ..+..++|+|||+.| ++...++...||..
T Consensus 230 -----------~v~iWd~~~~~~~~~-------~~~~~---~~~~~----~~v~~~~~s~~g~~l-as~~~D~~v~lw~~ 283 (297)
T 2pm7_B 230 -----------TCIIWTQDNEQGPWK-------KTLLK---EEKFP----DVLWRASWSLSGNVL-ALSGGDNKVTLWKE 283 (297)
T ss_dssp -----------CEEEEEESSTTSCCE-------EEESS---SSCCS----SCEEEEEECSSSCCE-EEEETTSCEEEEEE
T ss_pred -----------cEEEEEeCCCCCccc-------eeeee---cccCC----CcEEEEEECCCCCEE-EEEcCCCcEEEEEE
Confidence 477788765431100 00000 00111 134567899999866 45556778888877
Q ss_pred ECCCCcEE
Q 004141 419 NVSSGELL 426 (771)
Q Consensus 419 d~~tg~~~ 426 (771)
+.. |...
T Consensus 284 ~~~-g~w~ 290 (297)
T 2pm7_B 284 NLE-GKWE 290 (297)
T ss_dssp CTT-SCEE
T ss_pred CCC-CcEE
Confidence 653 4443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.3e-09 Score=106.66 Aligned_cols=271 Identities=14% Similarity=0.101 Sum_probs=154.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+| |+|++|+.....+ .+.+| ..+........... .+..+.|+|||+.|+..+.+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTGQG---------FLNSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEECSS---------CEEEEEEETTTTEEEEEETTSCE
T ss_pred CCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecCCc---------cEEEEEECCCCCEEEEecCCCeE
Confidence 45778889 9999988765543 45556 23333333332111 12689999999999988766542
Q ss_pred CCCCccCCCCCC---CCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEec-CCC
Q 004141 177 SKPTFSLGSTKG---GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wsp-Dg~ 252 (771)
. .|....... ......+......+.| +....+++.....|.+|| .......+ ......+..+.|+| +++
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 84 N--GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp E--EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE--ECCSSCEEEEEEEETTTT
T ss_pred E--EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec--ccCCCceeEEEEccCCCC
Confidence 2 122111111 1111122222223344 333455566678999999 33333444 33455677889988 777
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l 331 (771)
. |+..+ .+..|.++|. . .....+.. ....+....|+|+|+ |
T Consensus 157 ~----l~~~~---------------~d~~i~i~d~-----------------~-~~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 157 K----FLTAS---------------ADKTIKLWQN-----------------D-KVIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------T-EEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred E----EEEEE---------------CCCCEEEEec-----------------C-ceEEEEeccCcccEEEEEEcCCCe-E
Confidence 5 66554 2336777774 2 23333443 566788999999999 6
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..+.+ ..|.+||+.+++...... . ....+..++|+||++ | ++...++
T Consensus 199 ~~~~~d-----------g~i~i~d~~~~~~~~~~~----------~---------~~~~i~~~~~~~~~~-l-~~~~~dg 246 (313)
T 3odt_A 199 ISCSND-----------GLIKLVDMHTGDVLRTYE----------G---------HESFVYCIKLLPNGD-I-VSCGEDR 246 (313)
T ss_dssp EEEETT-----------SEEEEEETTTCCEEEEEE----------C---------CSSCEEEEEECTTSC-E-EEEETTS
T ss_pred EEccCC-----------CeEEEEECCchhhhhhhh----------c---------CCceEEEEEEecCCC-E-EEEecCC
Confidence 555443 358999987765321110 0 011345678999994 4 3444444
Q ss_pred eeEEEEEECCCCcEEEec-CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 412 SQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~-~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
. |..+|+.+++..... .....+....|+++++ ++. .+. -..+.+.++.++
T Consensus 247 ~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~---dg~i~iw~~~~~ 297 (313)
T 3odt_A 247 T--VRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSS---DNLVRIFSQEKS 297 (313)
T ss_dssp E--EEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EET---TSCEEEEESCGG
T ss_pred E--EEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeC---CCcEEEEeCCCC
Confidence 4 556688888765443 3333556678889988 333 322 235777776544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=111.07 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=108.4
Q ss_pred ceEEEEEccCCce--------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 218 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 218 ~~l~v~d~~~~~~--------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..|.+||+.++.. ..+ ......+..++|+|++.. +++++. ....|+++|+
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~s~~--------------~dg~i~i~d~-- 261 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHES----LFGSVA--------------DDQKLMIWDT-- 261 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEET--
T ss_pred CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCC----EEEEEe--------------CCCeEEEEEC--
Confidence 5788999877321 222 344456888999997766 666552 3347888998
Q ss_pred ccchhhhhhhhcCCCCCC----cceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 290 YKSEASELELKESSSEDL----PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~----~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
..+ ....+..+...+....|+|+|+.++.+...+ ..|.+||+.+......+
T Consensus 262 ---------------~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d----------g~v~vwd~~~~~~~~~~ 316 (430)
T 2xyi_A 262 ---------------RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD----------KTVALWDLRNLKLKLHS 316 (430)
T ss_dssp ---------------TCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SEEEEEETTCTTSCSEE
T ss_pred ---------------CCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC----------CeEEEEeCCCCCCCeEE
Confidence 332 2344445666788999999999765555443 35889998764321100
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCC------------CcEEEecCC-C
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS------------GELLRITPA-E 432 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~t------------g~~~~l~~~-~ 432 (771)
+.. ....+..++|+|+++.++++...++...||.++..+ .++...... .
T Consensus 317 ---------~~~---------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 378 (430)
T 2xyi_A 317 ---------FES---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT 378 (430)
T ss_dssp ---------EEC---------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS
T ss_pred ---------eec---------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCC
Confidence 000 011345778999998888888777776777543211 133333322 2
Q ss_pred CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 433 SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 433 ~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
..+....|++++++++++.+.- ..|.+.++
T Consensus 379 ~~v~~~~~~p~~~~~l~s~s~d---g~i~iw~~ 408 (430)
T 2xyi_A 379 AKISDFSWNPNEPWIICSVSED---NIMQVWQM 408 (430)
T ss_dssp SCEEEEEECSSSTTEEEEEETT---SEEEEEEE
T ss_pred CCceEEEECCCCCCEEEEEECC---CCEEEeEc
Confidence 3456678889888555555432 34555554
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=124.06 Aligned_cols=134 Identities=19% Similarity=0.190 Sum_probs=92.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-chHHHHHHHHCC-cEEEEECCCC-CCCCChhhhhc--CC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVG-YSLLIVNYRG-SLGFGEEALQS--LP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la~~G-~~Vv~~d~rG-~~~~g~~~~~~--~~ 589 (771)
+.|++.+ .+|.|.. ..++.|+||++|||++...... .......|+++| ++|+.+|||. ..||+...... ..
T Consensus 81 ~edcl~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~ 156 (498)
T 2ogt_A 81 SEDGLYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAY 156 (498)
T ss_dssp BSCCCEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGG
T ss_pred CCCCcEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccccc
Confidence 4456555 4667862 4567899999999986543332 222345677666 9999999993 11233221100 01
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 004141 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~ 652 (771)
...+...+.|+.++++|+.++ ...|++||.|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 157 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 157 AQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 123344588999999999886 236899999999999999998887753 467999999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.3e-08 Score=102.23 Aligned_cols=258 Identities=15% Similarity=0.110 Sum_probs=147.6
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...++|+|||+ |+++... ...++.++ .+++.+.+... ...+ .++.|+|||+.++......
T Consensus 47 ~~~~~~~~~g~-l~~~~~~---~~~i~~~d~~~~~~~~~~~~~~~~~----------~~i~~~~dg~l~v~~~~~~---- 108 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVCYLGDF---- 108 (333)
T ss_dssp EEEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEEECTTS----
T ss_pred ccCcEECCCCC-EEEEECC---CCEEEEEeCCCCcEEEEeeCCCCCc----------ceEEECCCCcEEEEeCCCC----
Confidence 46799999998 5444332 23577776 45555554422 2222 5899999997444321110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
.....|+++|.+++..+.+ ........+..+.++|||+
T Consensus 109 ------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~----- 147 (333)
T 2dg1_A 109 ------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG----- 147 (333)
T ss_dssp ------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----
T ss_pred ------------------------------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-----
Confidence 0125799999998887643 1111223567889999996
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++....... ......||+++. ++++.+.+.........+.|+|||+.|++....
T Consensus 148 l~v~~~~~~~--------~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~ 202 (333)
T 2dg1_A 148 FYFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT 202 (333)
T ss_dssp EEEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred EEEEeccccc--------cCCCceEEEEeC-----------------CCCEEEEeecCCCcccceEECCCCCEEEEEeCC
Confidence 6665532100 012347999987 666666554433346678999999988776543
Q ss_pred CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
...|+++|+.+.+............. +++. ..+..+++++||+ |++..... ..|++
T Consensus 203 ----------~~~i~~~d~~~~g~~~~~~~~~~~~~---------~~~~--~~~~~i~~d~~G~-l~v~~~~~--~~v~~ 258 (333)
T 2dg1_A 203 ----------ANRLHRIALEDDGVTIQPFGATIPYY---------FTGH--EGPDSCCIDSDDN-LYVAMYGQ--GRVLV 258 (333)
T ss_dssp ----------GTEEEEEEECTTSSSEEEEEEEEEEE---------CCSS--SEEEEEEEBTTCC-EEEEEETT--TEEEE
T ss_pred ----------CCeEEEEEecCCCcCcccccceEEEe---------cCCC--CCCCceEECCCCC-EEEEEcCC--CEEEE
Confidence 24689999864321100000000000 0000 0123467889987 55554322 36777
Q ss_pred EECCCCcEEEecCCCC------CceeeEEeecCCEEEEEEeCCC--CCCeEEEEEec
Q 004141 418 VNVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPV--DVPQVKYGYFV 466 (771)
Q Consensus 418 ~d~~tg~~~~l~~~~~------~~~~~~~s~dg~~l~~~~~~~~--~p~~l~~~~~~ 466 (771)
++.++..+..+..... ......|++|++.|+++..... ....||.++..
T Consensus 259 ~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 259 FNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp ECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 8886555555543321 2455678889888888776543 23456666643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-08 Score=100.79 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=142.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...|.|+|++..|+++... ...++.++..+...........+ .++.|+|||+ |+.. .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~---~~~i~~~d~~~~~~~~~~~~~~~----------~~i~~~~dG~-l~v~-~-------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIP---AKKVCRWDSFTKQVQRVTMDAPV----------SSVALRQSGG-YVAT-I-------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEETTTCCEEEEECSSCE----------EEEEEBTTSS-EEEE-E--------
T ss_pred ccCCeEECCCCEEEEEECC---CCEEEEEECCCCcEEEEeCCCce----------EEEEECCCCC-EEEE-E--------
Confidence 3479999999888877542 34577777333333344433333 5889999999 3332 1
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCccE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~~ 257 (771)
...|+++|.++++.+.+..... ...+..++++|||+
T Consensus 72 ------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~----- 110 (297)
T 3g4e_A 72 ------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR----- 110 (297)
T ss_dssp ------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-----
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-----
Confidence 1478999999888776621111 12456789999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|++.......... ........||+++. + ++...+.........++|||||+.|++....
T Consensus 111 l~~~~~~~~~~~~---~~~~~~~~l~~~d~-----------------~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 111 YFAGTMAEETAPA---VLERHQGALYSLFP-----------------D-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp EEEEEEECCSBTT---BCCTTCEEEEEECT-----------------T-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred EEEecCCcccccc---cccCCCcEEEEEEC-----------------C-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence 6666532211000 00012347898885 3 4444444333445678999999998877654
Q ss_pred CCCCCCCccccccceeeecC--CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 338 SSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
. ..|++++++ ++.. . ....+..+ ..... .+..+++.+||+ |+++.... ..|
T Consensus 170 ~----------~~i~~~~~d~~~G~~---~-~~~~~~~~---~~~~~-------~p~g~~~d~~G~-lwva~~~~--~~v 222 (297)
T 3g4e_A 170 S----------YSVDAFDYDLQTGQI---S-NRRSVYKL---EKEEQ-------IPDGMCIDAEGK-LWVACYNG--GRV 222 (297)
T ss_dssp G----------TEEEEEEECTTTCCE---E-EEEEEEEC---CGGGC-------EEEEEEEBTTSC-EEEEEETT--TEE
T ss_pred C----------CcEEEEeccCCCCcc---c-CcEEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEcCC--CEE
Confidence 2 468888874 3331 1 00001110 00001 123567888986 65554332 358
Q ss_pred EEEECCCCcEEE-ecCCCCCceeeEEe-ecCCEEEEEEeCCC
Q 004141 416 ISVNVSSGELLR-ITPAESNFSWSLLT-LDGDNIIAVSSSPV 455 (771)
Q Consensus 416 ~~~d~~tg~~~~-l~~~~~~~~~~~~s-~dg~~l~~~~~~~~ 455 (771)
+++|.++|++.. +...........|+ +|++.|+++.....
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 889998787654 43333345567787 78888888776543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-09 Score=112.43 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=91.8
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|++||+.++. ...+ ......+..+.|+|+++. +++++. ....|.++|+.
T Consensus 254 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----~l~tg~--------------~dg~v~vwd~~----- 308 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEF----ILATGS--------------ADKTVALWDLR----- 308 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEETT-----
T ss_pred CeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCC----EEEEEe--------------CCCeEEEEeCC-----
Confidence 689999998762 2233 234456889999999998 777662 23478888872
Q ss_pred hhhhhhhcCCCC-CCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee---
Q 004141 294 ASELELKESSSE-DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV--- 369 (771)
Q Consensus 294 ~~~~~~~~~~~~-~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~--- 369 (771)
. ......+..+...+....|+|+|+.++.....+ ..|.+||+...+..+......
T Consensus 309 -----------~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 309 -----------NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp -----------CTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred -----------CCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCccccCccccccCC
Confidence 2 223455556677789999999998755555432 358888886633211100000
Q ss_pred -eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 370 -DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 370 -~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
.+...... +...+..++|+|+++.++++...++...+|.++
T Consensus 368 ~~~~~~~~~---------h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 368 PELLFIHGG---------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TTEEEECCC---------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cceEEEcCC---------CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 00100000 112356788999999777777777877888764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-07 Score=101.26 Aligned_cols=299 Identities=10% Similarity=0.042 Sum_probs=155.5
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecC------CCCC
Q 004141 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP------ENES 123 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~------~~~~ 123 (771)
+|+.+ +|+.++.. .+.. ..+..+|.. ..+.. ++.... . - .+++||||++|++.... ++..
T Consensus 82 ~~~~~-vyV~n~~~--~~~~-~~VsVID~~--t~~vv~~I~vG~-----~-P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 82 PDARR-VYIQDPAH--FAAI-TQQFVIDGS--TGRILGMTDGGF-----L-P-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCTTE-EEEEECTT--TCSS-EEEEEEETT--TTEEEEEEEECS-----S-C-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCE-EEEECCCc--CCCC-CeEEEEECC--CCEEEEEEECCC-----C-C-ceEECCCCCEEEEEeccccccccCCCC
Confidence 57866 45555421 0001 577776652 22222 222221 2 3 78999999998654321 0022
Q ss_pred CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 124 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 124 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+..++ ...+..+.+.+..... .-....-..+.+||||++|+.....
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r--~~~g~~P~~~~~spDGk~lyV~n~~----------------------------- 197 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPR--FLVGTYQWMNALTPDNKNLLFYQFS----------------------------- 197 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCC--CCBSCCGGGSEECTTSSEEEEEECS-----------------------------
T ss_pred CEEEEEECCCCcEEEEEECCCccc--cccCCCcceEEEcCCCCEEEEEecC-----------------------------
Confidence 3466666 4555555555431000 0000011488999999987665321
Q ss_pred cccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCcee
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 282 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l 282 (771)
....|.++|+.++++..- ++-..+ ....|+|+. .++... ....+
T Consensus 198 -------------~~~~VsVID~~t~kvv~~--I~v~g~---~~~~p~g~~----~~v~~~--------------~dG~~ 241 (426)
T 3c75_H 198 -------------PAPAVGVVDLEGKTFDRM--LDVPDC---YHIFPASPT----VFYMNC--------------RDGSL 241 (426)
T ss_dssp -------------SSCEEEEEETTTTEEEEE--EECCSE---EEEEEEETT----EEEEEE--------------TTSSE
T ss_pred -------------CCCeEEEEECCCCeEEEE--EEcCCc---eeeccCCCc----EEEEEc--------------CCCCE
Confidence 136799999999886543 221111 234455554 444321 11234
Q ss_pred EEEecccccchhhhhhhhcCCCCCCcce-----ecCCCCc-cccceeecCCCCEEEEEecCCCCCCCCccccccceeeec
Q 004141 283 YAVRVSLYKSEASELELKESSSEDLPVV-----NLTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 283 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~lt~~~~-~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
..+++ .+++.. .+..... ....+.+++||+.++|.... ..++++|+
T Consensus 242 ~~V~~-----------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~-----------g~V~ViD~ 293 (426)
T 3c75_H 242 ARVDF-----------------ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT-----------GKIFQADL 293 (426)
T ss_dssp EEEEC-----------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT-----------SEEEEEEE
T ss_pred EEEEC-----------------CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC-----------CcEEEEec
Confidence 44444 222211 1111111 12346789999999988743 25999998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCC-cccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEe
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCF-PGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRI 428 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f-~g~~~~~~~~~~~s~Dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l 428 (771)
.++....+.. ..+. ..... .|........+.+++|+++||+..... ....++.||..+.++..-
T Consensus 294 ~~~~~~v~~~-----~~~~---~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~ 365 (426)
T 3c75_H 294 TAEGATFRAP-----IEAL---TEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINK 365 (426)
T ss_dssp CSSCEEECCC-----EESS---CTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred cCCceEEeee-----eeec---cccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEE
Confidence 7654321100 0000 00000 000001223467899999998876432 246799999999886643
Q ss_pred cCCCCCceeeEEeecCC-EEEEEEeCCCCCCeEEEEEeccc
Q 004141 429 TPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 429 ~~~~~~~~~~~~s~dg~-~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
...........|++||+ .+|.+... -..|.++|..+.
T Consensus 366 I~vg~~P~gia~spDg~~~lyv~n~~---s~~VsVID~~t~ 403 (426)
T 3c75_H 366 IELGHEIDSINVSQDAEPLLYALSAG---TQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEECEEEECCSSSCEEEEEETT---TTEEEEEETTTC
T ss_pred EECCCCcCeEEEccCCCEEEEEEcCC---CCeEEEEECCCC
Confidence 32222234568999999 55544422 356888887654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-07 Score=102.73 Aligned_cols=247 Identities=15% Similarity=0.092 Sum_probs=152.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
-+.....||+++ .||+..+. .+.+| ..++..++..+... .+ .+.+++|||||++||..+.
T Consensus 106 ~y~~~l~wS~~n-~lAvgld~------tV~lWd~~tg~~~~~~~~~~~-~~------~V~sv~fspdg~~lasgs~---- 167 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS---- 167 (420)
T ss_dssp TTCBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET----
T ss_pred ccceeEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecCC-CC------cEEEEEECCCCCEEEEEEC----
Confidence 346678999865 67765432 35566 45566666554221 11 2369999999999988643
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
+..|.+||+.+++..... ......+.. +++|++.
T Consensus 168 ----------------------------------------Dg~v~iWd~~~~~~~~~~-~~h~~~v~~--~s~~~~~--- 201 (420)
T 4gga_A 168 ----------------------------------------SAEVQLWDVQQQKRLRNM-TSHSARVGS--LSWNSYI--- 201 (420)
T ss_dssp ----------------------------------------TSCEEEEETTTTEEEEEE-CCCSSCEEE--EEEETTE---
T ss_pred ----------------------------------------CCeEEEEEcCCCcEEEEE-eCCCCceEE--EeeCCCE---
Confidence 357899999988765541 223333444 4556664
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ ....++.+|... .......+..+...+....|+|+|+.|+....
T Consensus 202 -l~sgs---------------~d~~i~~~d~~~---------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~ 250 (420)
T 4gga_A 202 -LSSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGN 250 (420)
T ss_dssp -EEEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -EEEEe---------------CCCceeEeeecc---------------cceeeEEecccccceeeeeecCCCCeeeeeec
Confidence 55443 334677777621 12233456666777888999999999987776
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+. .+.+++..+++.......... . ....+...+|+|++..++++........|.
T Consensus 251 D~-----------~v~i~~~~~~~~~~~~~~~~~-----------~----~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 251 DN-----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp TS-----------CEEEEESSCCSSCSCCSEEEC-----------C----CSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred cc-----------cceEEeeccccccceeeeeec-----------c----cCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 53 477888776654221110000 0 011244668999888787765533334566
Q ss_pred EEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 417 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.+|+.+++..........+....++++++.+++.....+ ..|++.+..++
T Consensus 305 iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d--~~I~iwd~~~~ 354 (420)
T 4gga_A 305 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPTM 354 (420)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTTC
T ss_pred EEeCCccccceeeccccceeeeeecCCCCeEEEEEecCC--CEEEEEECCCC
Confidence 669989887766555555666788999998887654333 34666665443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=4.5e-07 Score=94.62 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=72.6
Q ss_pred ceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc--cCCCCCcccccCCCCCCccc
Q 004141 321 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 321 ~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~g~~~~~~~~~~~s 397 (771)
.+.|. +||+ ++|.+.. .+++++|+.++..+.+ ... .++.. ...+-.| .....++++
T Consensus 230 ~~~~~~~dG~-~~~vs~~-----------g~V~v~d~~~~~~~v~-~~~----~~~~~~~~~~g~~p----~g~q~~a~~ 288 (386)
T 3sjl_D 230 HPAYSQKAGR-LVWPTYT-----------GKIHQIDLSSGDAKFL-PAV----EALTEAERADGWRP----GGWQQVAYH 288 (386)
T ss_dssp CCEEETTTTE-EEEEBTT-----------SEEEEEECTTSSCEEC-CCE----ESSCHHHHHTTEEE----CSSSCEEEE
T ss_pred cceeEcCCCc-EEEEeCC-----------CEEEEEECCCCcceee-cce----eccccccccccccC----CCcceeeEC
Confidence 35674 7885 6777753 2599999877653211 110 00000 0000011 123456778
Q ss_pred cCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 398 SDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 398 ~Dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+|+++||+....+ ...+++.+|+.++++.+-..-........+++|++.++++.+. ....+.++|..++
T Consensus 289 ~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~--~~~~VsViD~~t~ 364 (386)
T 3sjl_D 289 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST--GDKTLYIHDAESG 364 (386)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET--TTTEEEEEETTTC
T ss_pred CCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC--CCCeEEEEECCCC
Confidence 9999998876532 2468999999999876443322223457899999855555442 2356888887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=110.31 Aligned_cols=158 Identities=7% Similarity=0.060 Sum_probs=97.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC---cceEEEecCC---cccccccCCCcccceeecCCC-CeEEEEe
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS---QLEKEFHVPQ---TVHGSVYADGWFEGISWNSDE-TLIAYVA 171 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~g~~~~~~~~~~~~wSpDg-~~la~~~ 171 (771)
..+...+|||||+.|+.. .. + .+.+|+-. ...+++.... ..| .+.+..++|+||| +.|+..+
T Consensus 178 ~~v~~~~~~~~~~~l~s~-~d--~---~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~p~~~~~l~s~~ 246 (447)
T 3dw8_B 178 YHINSISINSDYETYLSA-DD--L---RINLWHLEITDRSFNIVDIKPANMEEL-----TEVITAAEFHPNSCNTFVYSS 246 (447)
T ss_dssp SCCCEEEECTTSSEEEEE-CS--S---EEEEEETTEEEEEEEEEECCCSSGGGC-----CCCEEEEEECSSCTTEEEEEE
T ss_pred cceEEEEEcCCCCEEEEe-CC--C---eEEEEECCCCCceeeeeeccccccccc-----CcceEEEEECCCCCcEEEEEe
Confidence 457889999999999864 32 2 45566322 2222222111 111 1234789999999 7777754
Q ss_pred cCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-----eeccCCCCCC------
Q 004141 172 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-----QAVKGIPKSL------ 240 (771)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-----~~l~~~~~~~------ 240 (771)
. ...|.+||+.+++. ..+. ....
T Consensus 247 ~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~ 280 (447)
T 3dw8_B 247 S--------------------------------------------KGTIRLCDMRASALCDRHSKLFE--EPEDPSNRSF 280 (447)
T ss_dssp T--------------------------------------------TSCEEEEETTTCSSSCTTCEEEC--CC-----CCH
T ss_pred C--------------------------------------------CCeEEEEECcCCccccceeeEec--cCCCcccccc
Confidence 3 25788999988774 4442 2221
Q ss_pred ------ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-Cc-ceec
Q 004141 241 ------SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LP-VVNL 312 (771)
Q Consensus 241 ------~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~l 312 (771)
.+..+.|+|||+. |+..+ . ..|.++|+ .. ++ ...+
T Consensus 281 ~~~~~~~v~~~~~s~~g~~----l~~~~---------------~-~~v~iwd~-----------------~~~~~~~~~~ 323 (447)
T 3dw8_B 281 FSEIISSISDVKFSHSGRY----MMTRD---------------Y-LSVKVWDL-----------------NMENRPVETY 323 (447)
T ss_dssp HHHHTTCEEEEEECTTSSE----EEEEE---------------S-SEEEEEET-----------------TCCSSCSCCE
T ss_pred ccccCceEEEEEECCCCCE----EEEee---------------C-CeEEEEeC-----------------CCCcccccee
Confidence 6788999999997 77554 2 37888887 32 32 2333
Q ss_pred CCCCcc---------------ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 313 TESISS---------------AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 313 t~~~~~---------------~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
..+... .....|||||++|+..+.+ ..|++||+.+++.
T Consensus 324 ~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~iwd~~~~~~ 376 (447)
T 3dw8_B 324 QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRMFDRNTKRD 376 (447)
T ss_dssp ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEEEETTTCCE
T ss_pred eccccccccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEEEEcCCCcc
Confidence 322211 1238999999998765544 3588999888764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-08 Score=118.73 Aligned_cols=230 Identities=12% Similarity=0.132 Sum_probs=141.2
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 174 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~ 174 (771)
+.+...+|||||++|+.....+ .+.+| .++....+..+. +..+. +.+++|+|+ |+.|+..+.+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~-~h~~~------V~~l~~s~~~~~~~l~s~s~D- 76 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLT-GHEGP------VWRVDWAHPKFGTILASCSYD- 76 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEEC-CCSSC------EEEEEECCTTSCSEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCCCccceecc-CCcCc------eEEEEecCCCCCCEEEEEeCC-
Confidence 4588899999999998775543 44555 222222222221 11222 268999998 9888886432
Q ss_pred CCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce---eeccCCCCCCccceEEEecC-
Q 004141 175 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL- 250 (771)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~---~~l~~~~~~~~~~~~~wspD- 250 (771)
..|.+||+.+++. ..+ ......+..+.|+|+
T Consensus 77 -------------------------------------------g~I~vwd~~~~~~~~~~~~--~~h~~~V~~v~~sp~~ 111 (753)
T 3jro_A 77 -------------------------------------------GKVLIWKEENGRWSQIAVH--AVHSASVNSVQWAPHE 111 (753)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECCGG
T ss_pred -------------------------------------------CeEEEEECCCCcccccccc--cCCCCCeEEEEECCCC
Confidence 5789999998853 333 334557889999999
Q ss_pred -CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecC
Q 004141 251 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSP 326 (771)
Q Consensus 251 -g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~Sp 326 (771)
|+. ++..+ .+..|.++|+ .++ ....+..+...+....|+|
T Consensus 112 ~~~~----l~sgs---------------~dg~I~vwdl-----------------~~~~~~~~~~~~~~~~~v~~l~~~p 155 (753)
T 3jro_A 112 YGPL----LLVAS---------------SDGKVSVVEF-----------------KENGTTSPIIIDAHAIGVNSASWAP 155 (753)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEC-----------------CSSSCCCCEEEECCSSCEEEEEECC
T ss_pred CCCE----EEEEe---------------CCCcEEEEEe-----------------ecCCCcceeEeecCCCceEEEEecC
Confidence 776 66655 3347888887 333 2344555667788999999
Q ss_pred -------------CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 327 -------------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 327 -------------DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
||+.|+..+.+. .|.+||+.++.... .....+.. +...+..
T Consensus 156 ~~~~~~~~~~~~~d~~~l~sgs~dg-----------~I~iwd~~~~~~~~------~~~~~~~~---------h~~~V~~ 209 (753)
T 3jro_A 156 ATIEEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRD 209 (753)
T ss_dssp CC---------CGGGCCEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEE
T ss_pred cccccccccccCCCCCEEEEEECCC-----------eEEEEeccCCcccc------eeeeeecC---------CCCcEEE
Confidence 688888777653 48888887654210 01111100 1113457
Q ss_pred CccccC---CCEEEEEeeeCCeeEEEEEECCCCcE---EEec---CCCCCceeeEEeecCCEEEEEE
Q 004141 394 NPWLSD---GCTMLLSSIWGSSQVIISVNVSSGEL---LRIT---PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 394 ~~~s~D---g~~l~~~~~~~~~~~l~~~d~~tg~~---~~l~---~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
++|+|+ ++ ++++...++...+|.+ .+++. ..+. .....+....|+++++.++...
T Consensus 210 l~~sp~~~~~~-~l~s~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s 273 (753)
T 3jro_A 210 VAWSPTVLLRS-YLASVSQDRTCIIWTQ--DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 273 (753)
T ss_dssp EEECCCCSSSE-EEEEEESSSCEEEEEE--SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred EEeccCCCCCC-EEEEEecCCEEEEecC--CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence 789999 65 5566666776666644 44421 1111 1222345568899998776544
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=2.8e-10 Score=126.22 Aligned_cols=132 Identities=20% Similarity=0.167 Sum_probs=90.5
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHH-CCcEEEEECCCC-CCCCChhhhhcCCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRG-SLGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~Vv~~d~rG-~~~~g~~~~~~~~~~ 591 (771)
+.|++.+ .+|.|... ..++.|+||++|||++....... ......|++ .|++|+.+|||. ..||+... ..+..
T Consensus 93 ~edcl~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~~~~ 167 (543)
T 2ha2_A 93 SEDCLYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREA 167 (543)
T ss_dssp ESCCCEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSC
T ss_pred CCcCCeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCC--CCCCC
Confidence 3455555 46678642 34568999999999876544321 222345554 799999999993 22232211 00112
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++ ...|++||.|+|+|+||.++..++... +.+|+++|+.+|..
T Consensus 168 ~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 2334589999999999876 237999999999999999998887643 46899999999853
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-08 Score=104.42 Aligned_cols=109 Identities=14% Similarity=0.203 Sum_probs=74.6
Q ss_pred ccceEEEeCCC---CCeEEEEecCCCCCCeEEEEe---cCCcce-EEEec-CCcccccccCCCcccceeecCCCCeEEEE
Q 004141 99 TGASAVVPSPS---GSKLLVVRNPENESPIQFELW---SQSQLE-KEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SPd---G~~la~~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
..+...+|||+ |++|+.....+ .+.+| ..+... ..... ... +..++|+|||+.|+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQMHTGP----------VLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEECSSC----------EEEEEECTTSSEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEeccccCC----------EEEEEECcCCCEEEEE
Confidence 56889999999 68887765433 34455 213222 22221 222 2689999999999876
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEE--e
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW--A 248 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~w--s 248 (771)
+. ...|.+||+.+++...+ ......+..+.| +
T Consensus 105 ~~--------------------------------------------dg~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~ 138 (368)
T 3mmy_A 105 SC--------------------------------------------DKTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKA 138 (368)
T ss_dssp ET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEEEEC
T ss_pred cC--------------------------------------------CCcEEEEEcCCCCceee--ccccCceEEEEEEeC
Confidence 43 25899999999988777 455567888999 8
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
||++. |+..+ .+..|+++|+
T Consensus 139 ~~~~~----l~~~~---------------~dg~i~vwd~ 158 (368)
T 3mmy_A 139 PNYSC----VMTGS---------------WDKTLKFWDT 158 (368)
T ss_dssp SSCEE----EEEEE---------------TTSEEEEECS
T ss_pred CCCCE----EEEcc---------------CCCcEEEEEC
Confidence 88886 66554 2346888887
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=104.52 Aligned_cols=262 Identities=15% Similarity=0.083 Sum_probs=147.3
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSV 149 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~ 149 (771)
+.+++|++.++ +..++... ......+...+|||+|++||..+..+ .+.+|+ .++..+.......
T Consensus 45 ~tV~iWd~~tg--~~~~~~~~--~~~~~~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~~----- 110 (318)
T 4ggc_A 45 NSVYLWSASSG--DILQLLQM--EQPGEYISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSA----- 110 (318)
T ss_dssp TEEEEEETTTC--CEEEEEEC--CSTTCCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS-----
T ss_pred CEEEEEECCCC--CEEEEEEe--cCCCCeEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCccc-----
Confidence 45777776432 33222111 11124578899999999998766543 566773 3333222221111
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC
Q 004141 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 228 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~ 228 (771)
....++++++.|+..+...... .+..... ........+........+.++....+++.....|.+||+.++
T Consensus 111 ------~~~~~~~~~~~l~s~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 111 ------RVGSLSWNSYILSSGSRSGHIH--HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ------CEEEEEEETTEEEEEETTSEEE--EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ------eEEEeecCCCEEEEEecCCceE--eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 2456778888777665443221 0110000 000011112222223345555444555566788999999876
Q ss_pred ceeecc---CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC
Q 004141 229 EVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 305 (771)
Q Consensus 229 ~~~~l~---~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 305 (771)
+..... .......+....|+|++.. +++.... .....|.++|. .
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~------------~~~~~i~lwd~-----------------~ 229 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSN----VLATGGG------------TSDRHIRIWNV-----------------C 229 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTT----EEEEEEC------------TTTCEEEEEET-----------------T
T ss_pred cccccceeeecccCCceEEEEecCCCCc----EEEEEec------------CCCCEEEEEec-----------------c
Confidence 532210 0223345678899999998 7765421 12336777786 4
Q ss_pred CCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc
Q 004141 306 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 306 ~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
.............+....|+|+++.++..+... ...|++||+.+++......+
T Consensus 230 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~---------d~~i~iwd~~~~~~~~~l~g------------------ 282 (318)
T 4ggc_A 230 SGACLSAVDAHSQVCSILWSPHYKELISGHGFA---------QNQLVIWKYPTMAKVAELKG------------------ 282 (318)
T ss_dssp TCCEEEEEECSSCEEEEEEETTTTEEEEEECTT---------TCCEEEEETTTCCEEEEECC------------------
T ss_pred cccccccccceeeeeeeeecccccceEEEEEcC---------CCEEEEEECCCCcEEEEEcC------------------
Confidence 455444444555677889999999998876432 24699999887654221111
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEE
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 417 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~ 417 (771)
+...+..++|+|||+.| ++.+.++...||.
T Consensus 283 -H~~~V~~l~~spdg~~l-~S~s~D~~v~iWd 312 (318)
T 4ggc_A 283 -HTSRVLSLTMSPDGATV-ASAAADETLRLWR 312 (318)
T ss_dssp -CSSCEEEEEECTTSSCE-EEEETTTEEEEEC
T ss_pred -CCCCEEEEEEcCCCCEE-EEEecCCeEEEEE
Confidence 11235577899999855 5666777777774
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-09 Score=116.77 Aligned_cols=303 Identities=10% Similarity=-0.024 Sum_probs=149.1
Q ss_pred hcccceeEEEEEEeecCCCCcc---ceeecCCccccccceEEEeCCC------CCeEEEEecCCCCCCeEEEEecCCcc-
Q 004141 66 LANKRKKFMLSTVISKENENSV---TFQWAPFPVEMTGASAVVPSPS------GSKLLVVRNPENESPIQFELWSQSQL- 135 (771)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~---~lt~~~~~~~~~~~~~~~~SPd------G~~la~~~~~~~~~~~~~~~~~~~~~- 135 (771)
++....+.+.+|++........ .+... .+.+...+|||+ |+.||..+.. +.-.+|.+..+...
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~-----~~~V~~v~wsp~~~~~~~~~~LAs~s~D--gtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHS-----FGEVWDLKWHEGCHAPHLVGCLSFVSQE--GTINFLEIIDNATDV 249 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEEC-----CCSEEEEEECSSCCCSSSSCEEEEEETT--SCEEEEECCCCSSSS
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEec-----CCcEEEEEECCCCCCCCCCceEEEEecC--CeEEEEEcCCCcccc
Confidence 4445566777777754321111 11111 145788999997 5677766553 33333333221111
Q ss_pred eEEEecCCcccccc-cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC-CCCccCCCCCCcc--cccCCc-Cc
Q 004141 136 EKEFHVPQTVHGSV-YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-SSDKDCNSWKGQG--DWEEDW-GE 210 (771)
Q Consensus 136 ~~~~~~~~~~~g~~-~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~d~-g~ 210 (771)
........... .+ .....+.+++|+|++ .|+..+.++..+ .|+....... .....+......+ .|.++. ..
T Consensus 250 ~~~~~~~~p~~-~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~--lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 250 HVFKMCEKPSL-TLSLADSLITTFDFLSPT-TVVCGFKNGFVA--EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp SEEECCCSCSE-EECCTTTCEEEEEESSSS-EEEEEETTSEEE--EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE
T ss_pred ccceeecCceE-EEEcCCCCEEEEEecCCC-eEEEEeCCCEEE--EEECCCCCCceEEeecccccEEEEEEEcCCCCCeE
Confidence 00000000000 00 001234789999975 677777665433 3433221111 1122334444444 456663 23
Q ss_pred ccCCccCceEEEEEccCCceee-ccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccc
Q 004141 211 TYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 289 (771)
Q Consensus 211 ~~~~~~~~~l~v~d~~~~~~~~-l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 289 (771)
..++..+..|.+||+.+++... +.+......+..++||||++. ++..+ ....|.++|+
T Consensus 326 laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~----l~s~~---------------~d~tv~lwd~-- 384 (524)
T 2j04_B 326 VSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS----YIYSD---------------GASSLRAVPS-- 384 (524)
T ss_dssp EEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE----EEEEC---------------SSSEEEEEET--
T ss_pred EEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe----EEEeC---------------CCCcEEEEEC--
Confidence 4566677899999998765422 211111123567899999987 76654 2225778887
Q ss_pred ccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 290 YKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..+. ...+..+...+.+.+|||||+.|+..+.+. .|.+||+..+-........
T Consensus 385 ---------------~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg-----------tv~lwd~~~~~~~~~~~~~ 438 (524)
T 2j04_B 385 ---------------RAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG-----------SLIITNAARRLLHGIKNSS 438 (524)
T ss_dssp ---------------TCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT-----------EEECCBSCSSTTTCC----
T ss_pred ---------------cccccceeeecCCCceEEEEeCCCCCeEEEEECCC-----------EEEEEechHhhccccccCc
Confidence 4444 356777778899999999999988766553 4777776543111000000
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCC
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 445 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~ 445 (771)
... .. ..+..++|+|||+.+-+ .+ ...++.++..+..+..+......+....|+|++.
T Consensus 439 -~~~--------~~------~~v~~v~~sp~g~~~~~---~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 439 -ATQ--------KS------LRLWKWDYSIKDDKYRI---DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp ---C--------CC------CEEEECBCCSSSCEEEE---CC-CCCCCC-------------CCCSCCCEEECCSTT
T ss_pred -cce--------ee------eEEEEeccCCCCCeEEc---cC-CceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 000 00 01235688999984422 11 1223333322333445555555566779999864
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-08 Score=99.96 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=136.5
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...|+|+|+++.++++... ..+++.++ .++.. +.+..+..+ .++.|+|||+.++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~---~~~i~~~d~~~~~~-~~~~~~~~v----------~~i~~~~dg~l~v~~--------- 107 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL---ERELHELHLASGRK-TVHALPFMG----------SALAKISDSKQLIAS--------- 107 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG---GTEEEEEETTTTEE-EEEECSSCE----------EEEEEEETTEEEEEE---------
T ss_pred CcCCeEeCCCCEEEEEECC---CCEEEEEECCCCcE-EEEECCCcc----------eEEEEeCCCeEEEEE---------
Confidence 3579999999988887543 24678777 44433 333333333 588999999865542
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC---CCccceEEEecCCCCCcc
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wspDg~~~~~ 256 (771)
...|+++|.++++.+.+..... ...+..+.++|||+
T Consensus 108 -------------------------------------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 146 (326)
T 2ghs_A 108 -------------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---- 146 (326)
T ss_dssp -------------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----
T ss_pred -------------------------------------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----
Confidence 1248999999888776631111 12456789999997
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
+++....... ......||+++ + ++.+.+.........++|||||+.|++...
T Consensus 147 -l~v~~~~~~~--------~~~~~~l~~~~-~------------------g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 147 -LWIGTMGRKA--------ETGAGSIYHVA-K------------------GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -EEEEEEETTC--------CTTCEEEEEEE-T------------------TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -EEEEeCCCcC--------CCCceEEEEEe-C------------------CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 6665422110 01234688886 2 233333332233567899999999988764
Q ss_pred CCCCCCCCccccccceeeecC--CC-CCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 337 KSSVDSGAHSATDSLHRIDWP--TN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~--~~-~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
.. ..|+++|+. ++ .... ...+..+ ..... .+..+++.+||. |+++... ..
T Consensus 199 ~~----------~~I~~~d~~~~~Gl~~~~----~~~~~~~---~~~~~-------~p~gi~~d~~G~-lwva~~~--~~ 251 (326)
T 2ghs_A 199 KV----------NRLMRVPLDARTGLPTGK----AEVFIDS---TGIKG-------GMDGSVCDAEGH-IWNARWG--EG 251 (326)
T ss_dssp TT----------CEEEEEEBCTTTCCBSSC----CEEEEEC---TTSSS-------EEEEEEECTTSC-EEEEEET--TT
T ss_pred CC----------CEEEEEEcccccCCcccC----ceEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEeC--CC
Confidence 32 469999975 44 2211 0001110 00001 123456788886 5554432 23
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEeCCC
Q 004141 414 VIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPV 455 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s-~dg~~l~~~~~~~~ 455 (771)
.|++++.++..+..+...........|+ ++++.|+++.....
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 6888898544445555443334556777 77788777665443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-08 Score=100.72 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=117.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~~~ 176 (771)
..+...+|||||++||.....+ .-.+|.+..+....++...-....+. +.+++|+| |++.|+..+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQ--HIKVFKLDKDTSNWELSDSWRAHDSS------IVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTS--EEEEEEECSSSCCEEEEEEEECCSSC------EEEEEECCGGGCSEEEEEETT---
T ss_pred cceeEEEEcCCCCEEEEeeCCC--eEEEEECCCCCCcceecceeccCCCc------EEEEEEcCCCCCCEEEEEcCC---
Confidence 4588899999999998775433 22233332222221222111111112 26899999 69988876432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc----------eeeccCCCCCCccceEE
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----------VQAVKGIPKSLSVGQVV 246 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~----------~~~l~~~~~~~~~~~~~ 246 (771)
..|.+||+.+++ ...+ ......+..+.
T Consensus 81 -----------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~ 117 (351)
T 3f3f_A 81 -----------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLYSVK 117 (351)
T ss_dssp -----------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEEEEE
T ss_pred -----------------------------------------CeEEEEecCCCcccccccCcceeeee--cccCCceeEEE
Confidence 578889988763 3333 34455688999
Q ss_pred EecC--CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eec-----------
Q 004141 247 WAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL----------- 312 (771)
Q Consensus 247 wspD--g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~l----------- 312 (771)
|+|+ ++. |+..+ .+..|.++|+ ..++. ..+
T Consensus 118 ~~~~~~~~~----l~~~~---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 118 FAPAHLGLK----LACLG---------------NDGILRLYDA-----------------LEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp ECCGGGCSE----EEEEE---------------TTCEEEEEEC-----------------SSTTCTTCCEEEEEEESCSC
T ss_pred EcCCCCCcE----EEEec---------------CCCcEEEecC-----------------CChHHhcccccccccccccc
Confidence 9999 886 66655 3346888887 22221 111
Q ss_pred --CCCCccccceeecCC---CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc
Q 004141 313 --TESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 387 (771)
Q Consensus 313 --t~~~~~~~~p~~SpD---G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~ 387 (771)
......+....|+|+ ++.|+..+.+. .+..++...+....+ ..+.. .
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~--------~~~~~---------h 213 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-----------AIIYQRGKDGKLHVA--------AKLPG---------H 213 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTE-----------EEEEEECTTSCEEEE--------EECCC---------C
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCC-----------cEEEEccCCCceeee--------eecCC---------C
Confidence 123445778999998 88877766542 233333333321110 00000 0
Q ss_pred cCCCCCCccccCCC---EEEEEeeeCCeeEEEEEEC
Q 004141 388 SSSILSNPWLSDGC---TMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 388 ~~~~~~~~~s~Dg~---~l~~~~~~~~~~~l~~~d~ 420 (771)
...+..++|+|++. .++++...++...+|.+..
T Consensus 214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 11345678999983 4667777778778886653
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.5e-10 Score=125.67 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=86.8
Q ss_pred cCCCceEEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCCCc-------chHHHHHHH-HCCcEEEEECCCCC-CCCChhh
Q 004141 515 KGAQKPFEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLS-SVGYSLLIVNYRGS-LGFGEEA 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~-~~~~~p~vv~~HGg~~~~~~~~-------~~~~~~~la-~~G~~Vv~~d~rG~-~~~g~~~ 584 (771)
+.|.+.+ .+|.|.... ..++.|+||++|||++...... +......|+ ..|++|+.+|||.. .++....
T Consensus 77 sedcl~l--nv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~ 154 (579)
T 2bce_A 77 NEDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCCCCEE--EEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCC
Confidence 4455555 577786432 3467899999999986543321 111123444 45799999999942 1221111
Q ss_pred hhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCc
Q 004141 585 LQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 650 (771)
Q Consensus 585 ~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~ 650 (771)
....+++ ..+.|+.++++|+.++ ...|++||.|+|+|.||.++..++.. ...+|+++|+.++.
T Consensus 155 ~~~~pgn---~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 155 DSNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp STTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCCCc---cchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 1112222 2478999999999875 24799999999999999999988764 34689999988874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-08 Score=103.92 Aligned_cols=230 Identities=9% Similarity=0.045 Sum_probs=120.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
..+...+|||||+.||...+.. +.+|+......+... ..+. ....|+++++.++.++.... .
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~------~~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~-~ 82 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS------FEIYNVHPVAHIMSQEMRHL----------SKVRMLHRTNYVAFVTGVKE-V 82 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE------EEEEEETTEEEEEEEECSCC----------CEEEECTTSSEEEEECSSTT-E
T ss_pred CceEEEEECCCCCEEEEEcCCE------EEEEecCCcceeeeeecCCe----------EEEEEcCCCCEEEEEECCcc-E
Confidence 4588899999999998654321 346632222222211 1122 57889999998877654321 1
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-ceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
...|+........... .......+.+.++. +.......|++||+.++ +.... ... ..+..+++| +.
T Consensus 83 v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~~~~~i~i~d~~~~~~~~~~--~~~--~~~~~~~s~--~~--- 149 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIK-VDAPVKDLFLSREF---IVVSYGDVISVFKFGNPWKRITD--DIR--FGGVCEFSN--GL--- 149 (355)
T ss_dssp EEEEETTTTEEEEEEE-CSSCEEEEEECSSE---EEEEETTEEEEEESSTTCCBSSC--CEE--EEEEEEEET--TE---
T ss_pred EEEEECCCCcEEEEEE-CCCceEEEEEcCCE---EEEEEcCEEEEEECCCCceeeEE--ecc--CCceEEEEc--cE---
Confidence 1223221111100000 11111122233321 11123456777777765 22111 111 233445666 43
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-----------------ceecCCCCccc
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----------------VVNLTESISSA 319 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----------------~~~lt~~~~~~ 319 (771)
+++.+ ......|.++|+ .++. ...+..+...+
T Consensus 150 -la~~s-------------g~~~g~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 150 -LVYSN-------------EFNLGQIHITKL-----------------QSSGSATTQDQGVQQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp -EEEEE-------------SSCTTCEEEEEC-----------------CC------------------CCEEECCCSSCE
T ss_pred -EEEeC-------------CCcCcEEEEEEC-----------------CCCCccccccccccccccCcccEEEEccCCce
Confidence 66652 113346888887 3332 45667777889
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCcccccc-ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
...+|||||+.|+..+.+ .. |.+||+.+++.... +.. |.+...+..++|+|
T Consensus 199 ~~~~~s~~g~~l~s~s~d-----------~~~v~iwd~~~~~~~~~----------~~~-------g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQD-----------GTIIRVFKTEDGVLVRE----------FRR-------GLDRADVVDMKWST 250 (355)
T ss_dssp EEEEECTTSSEEEEEETT-----------CSEEEEEETTTCCEEEE----------EEC-------TTCCSCEEEEEECT
T ss_pred EEEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEE----------EEc-------CCCCCcEEEEEECC
Confidence 999999999998877755 34 88899887654211 100 00112355788999
Q ss_pred CCCEEEEEeeeCCeeEEEEE
Q 004141 399 DGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~ 418 (771)
||+.| ++...++...||.+
T Consensus 251 ~~~~l-~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 251 DGSKL-AVVSDKWTLHVFEI 269 (355)
T ss_dssp TSCEE-EEEETTCEEEEEES
T ss_pred CCCEE-EEEECCCEEEEEEc
Confidence 99865 45555666666643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-08 Score=102.77 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=136.1
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCC--CCCeEEEEecCCCCCCeE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~~~~ 126 (771)
++||++|+-.. ..+.+.+|++....... ..+.. ....+...+|+| +|+.||..+... .
T Consensus 22 s~~g~~lasgs---------~D~~v~lwd~~~~~~~~~~~l~g-----H~~~V~~v~~~~~~~~~~l~s~s~D~-----~ 82 (316)
T 3bg1_A 22 DYYGTRLATCS---------SDRSVKIFDVRNGGQILIADLRG-----HEGPVWQVAWAHPMYGNILASCSYDR-----K 82 (316)
T ss_dssp CGGGCEEEEEE---------TTTEEEEEEEETTEEEEEEEEEC-----CSSCEEEEEECCGGGSSCEEEEETTS-----C
T ss_pred cCCCCEEEEEe---------CCCeEEEEEecCCCcEEEEEEcC-----CCccEEEEEeCCCCCCCEEEEEECCC-----E
Confidence 45777666432 33566777764331111 11221 225688899987 488888766543 4
Q ss_pred EEEec--CCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcc
Q 004141 127 FELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 202 (771)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (771)
..+|+ .+....+..+. ...+ .+.+++|+|| |+.|+..+.
T Consensus 83 v~iWd~~~~~~~~~~~~~-~h~~------~V~~v~~~p~~~g~~lasgs~------------------------------ 125 (316)
T 3bg1_A 83 VIIWREENGTWEKSHEHA-GHDS------SVNSVCWAPHDYGLILACGSS------------------------------ 125 (316)
T ss_dssp EEEECCSSSCCCEEEEEC-CCSS------CCCEEEECCTTTCSCEEEECS------------------------------
T ss_pred EEEEECCCCcceEEEEcc-CCCC------ceEEEEECCCCCCcEEEEEcC------------------------------
Confidence 55662 23222222221 1111 1268999998 777777533
Q ss_pred cccCCcCcccCCccCceEEEEEccCCce-eecc-CCCCCCccceEEEecCC-----------------CCCccEEEEEee
Q 004141 203 DWEEDWGETYAGKRQPSLFVININSGEV-QAVK-GIPKSLSVGQVVWAPLN-----------------EGLHQYLVFVGW 263 (771)
Q Consensus 203 ~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~-~~~~~~~~~~~~wspDg-----------------~~~~~~l~~~~~ 263 (771)
+..|.+||+.++.. .... .......+..+.|+|++ +. |+..+
T Consensus 126 --------------D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~sgs- 186 (316)
T 3bg1_A 126 --------------DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR----FASGG- 186 (316)
T ss_dssp --------------SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB----EECCB-
T ss_pred --------------CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce----EEEec-
Confidence 25688888876632 1110 02233456788999984 33 33322
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---cceecCCCCccccceeecCCC----CEEEEEec
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDG----KFLVFLSA 336 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~lt~~~~~~~~p~~SpDG----~~l~f~~~ 336 (771)
.+..|.++|+. ..+ ....+..+...+...+|||++ +.|+..+.
T Consensus 187 --------------~D~~v~lWd~~----------------~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 187 --------------CDNLIKLWKEE----------------EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp --------------TTSBCCEEEEC----------------TTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET
T ss_pred --------------CCCeEEEEEeC----------------CCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC
Confidence 23356666651 122 234556666778999999997 67776665
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+. .|.+|++.+......... +.. . +...+..++|+|||+.| ++...++...||
T Consensus 237 D~-----------~v~iw~~~~~~~~~~~~~---~~~--------~----~~~~v~~v~~sp~g~~l-as~~~D~~v~lw 289 (316)
T 3bg1_A 237 DG-----------RVFIWTCDDASSNTWSPK---LLH--------K----FNDVVWHVSWSITANIL-AVSGGDNKVTLW 289 (316)
T ss_dssp TC-----------EEEEEECSSTTCCCCBCC---EEE--------E----CSSCEEEEEECTTTCCE-EEEESSSCEEEE
T ss_pred CC-----------eEEEEEccCccccchhhh---hhh--------c----CCCcEEEEEEcCCCCEE-EEEcCCCeEEEE
Confidence 53 477888765321000000 000 0 11134577899999865 555667788888
Q ss_pred EEECCCCcEEEe
Q 004141 417 SVNVSSGELLRI 428 (771)
Q Consensus 417 ~~d~~tg~~~~l 428 (771)
..+.. |+...+
T Consensus 290 ~~~~~-g~~~~~ 300 (316)
T 3bg1_A 290 KESVD-GQWVCI 300 (316)
T ss_dssp EECTT-SCEEEE
T ss_pred EECCC-CcEEEe
Confidence 77653 554444
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-10 Score=127.48 Aligned_cols=131 Identities=22% Similarity=0.207 Sum_probs=88.7
Q ss_pred cCCCceEEEEEEec-----CCCCCCCC----CcEEEEEcCCCCCCCCCcc-hHHHHHHHHCCcEEEEECCCCCC-CCChh
Q 004141 515 KGAQKPFEAIFVSS-----SHKKDCSC----DPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSL-GFGEE 583 (771)
Q Consensus 515 ~~~g~~l~~~~~~P-----~~~~~~~~----~p~vv~~HGg~~~~~~~~~-~~~~~~la~~G~~Vv~~d~rG~~-~~g~~ 583 (771)
+.|.+. ..+|.| ... ..++ .|+||++|||++....... ......|+++|++|+.+|||... |+...
T Consensus 87 ~edcL~--lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~ 163 (551)
T 2fj0_A 87 SEACIH--ANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSL 163 (551)
T ss_dssp CSCCCE--EEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCC
T ss_pred CCCCeE--EEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccC
Confidence 344544 457778 322 2333 8999999998865543321 12345677899999999999521 12111
Q ss_pred hhhcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 004141 584 ALQSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 584 ~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~ 651 (771)
.. ....+...+.|+.++++|+.++ ...|++||.|+|+|+||.+++.++.. .+.+|+++|+.+|..
T Consensus 164 ~~---~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 164 NS---TSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp SS---SSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cc---cCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 10 1112334589999999999886 23689999999999999999988765 356899999998863
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=107.85 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=83.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D 599 (771)
+...++.|.. .+.+..+.||++||...+. ...|. .....|.++||.|+.+|++| +|... .....++
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~-~~~w~~~l~~~L~~~Gy~V~a~DlpG---~G~~~--------~~~~~~~ 116 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTTG-PQSFDSNWIPLSAQLGYTPCWISPPP---FMLND--------TQVNTEY 116 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCCH-HHHHTTTHHHHHHHTTCEEEEECCTT---TTCSC--------HHHHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCCc-HHHHHHHHHHHHHHCCCeEEEecCCC---CCCCc--------HHHHHHH
Confidence 4444666633 2334556799999975542 12455 67888999999999999998 43221 1123567
Q ss_pred HHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccc
Q 004141 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 652 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~ 652 (771)
+.+.++.+.+.. ..+++.|+||||||.++.+++..+ +++++.+|+++|...
T Consensus 117 la~~I~~l~~~~--g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 117 MVNAITTLYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHh--CCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 777888877763 347899999999999998777764 589999999988754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-08 Score=117.53 Aligned_cols=216 Identities=9% Similarity=0.084 Sum_probs=125.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||+.||.....+ .+.+|+......+..... .+ .+..++||| |++|+..+.
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~~--~~------~V~~l~fsp-g~~L~S~s~------ 77 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIKLED--RS------AIKEMRFVK-GIYLVVINA------ 77 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEECSS--CC------CEEEEEEET-TTEEEEEET------
T ss_pred CCcEEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEcCC--CC------CEEEEEEcC-CCEEEEEEC------
Confidence 4578899999999999876543 566673322222222221 11 236999999 887776543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
+..|.+||+.+++.... ......+..++|+|||+. |
T Consensus 78 --------------------------------------D~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~----l 113 (902)
T 2oaj_A 78 --------------------------------------KDTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDW----M 113 (902)
T ss_dssp --------------------------------------TCEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSE----E
T ss_pred --------------------------------------cCeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCE----E
Confidence 26899999998875443 223346788999999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc------------eecCCCCccccceeecC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------------VNLTESISSAFFPRFSP 326 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~~lt~~~~~~~~p~~Sp 326 (771)
+..+ .+..|.++|+ .++.. ..+..+...+.+.+|+|
T Consensus 114 ~sgs---------------~dg~V~lwd~-----------------~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 114 LIGL---------------QNGSMIVYDI-----------------DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEE---------------TTSCEEEEET-----------------TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 6654 2346888887 44432 12334556788999999
Q ss_pred CCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCC--CCcccccCCCCCCccccCCCEEE
Q 004141 327 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTML 404 (771)
Q Consensus 327 DG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~g~~~~~~~~~~~s~Dg~~l~ 404 (771)
++..++.....+ ..+ +||+.+++.......... + -...... .........+..++|+|||+.|
T Consensus 162 ~~~~~l~~g~~d----------g~v-lWd~~~~~~~~~~~~~~~--~-g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l- 226 (902)
T 2oaj_A 162 RDIGTVLISYEY----------VTL-TYSLVENEIKQSFIYELP--P-FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI- 226 (902)
T ss_dssp TEEEEEEEECSS----------CEE-EEETTTTEEEEEECCCBC--T-TCCCSTTCCCTTSCBCCCEEEEEECTTSSEE-
T ss_pred CCCCEEEEEeCC----------CcE-EEECCCCceEEEEecccC--C-cCCCcccccccccccCCCeEEEEEcCCCCEE-
Confidence 754333444332 347 889877653211000000 0 0000000 0000011235578899999855
Q ss_pred EEeeeCCeeEEEEEECCCCcEEE
Q 004141 405 LSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 405 ~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
++...++...|| |+.+++...
T Consensus 227 asgs~Dg~i~lW--d~~~g~~~~ 247 (902)
T 2oaj_A 227 ITIHEDNSLVFW--DANSGHMIM 247 (902)
T ss_dssp EEEETTCCEEEE--ETTTCCEEE
T ss_pred EEEECCCeEEEE--ECCCCcEEE
Confidence 455556555555 887887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-07 Score=101.04 Aligned_cols=317 Identities=8% Similarity=-0.012 Sum_probs=169.4
Q ss_pred chhhHHHHHHHHHHHHHhhcCc-cccc-----e--EEE--------ecCCCCcceEEEEEeechhhcccceeEEEEEEee
Q 004141 17 DATAEEEYASLSKLLQDFTNIS-SIDK-----A--WTF--------NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVIS 80 (771)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~--~~~--------~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (771)
..-+.++++.+.+.++.+..-+ .+.. . .+. +..+.|....+|..... ...++++|..
T Consensus 113 ~~Lsd~ei~~l~~yi~~~~~~~~~~~~~~i~~s~kv~~~~~~~P~~~~~~~d~~~~~~V~~~~-------~~~V~viD~~ 185 (567)
T 1qks_A 113 GELSAEQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRD-------AGQIALIDGS 185 (567)
T ss_dssp CCCCHHHHHHHHHHHHSCCCCCCCCCHHHHHHHCEESSCGGGSCSSCCSCCCGGGEEEEEETT-------TTEEEEEETT
T ss_pred CCCCHHHHHHHHHHHhhcccCCCccchhhhhccceeeccccccccccccccCCCceEEEEeCC-------CCeEEEEECC
Confidence 3446677777777666554311 1110 0 111 12345656667765542 3577886653
Q ss_pred cCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCcceEEEecCCcccccccCCCccc
Q 004141 81 KENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFE 156 (771)
Q Consensus 81 ~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~ 156 (771)
..+.. ++... .....+++||||++++.. ..+ ..+..++. ..+....+...... .
T Consensus 186 --t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~-~~d---g~V~viD~~~~t~~~v~~i~~G~~P----------~ 243 (567)
T 1qks_A 186 --TYEIKTVLDTG------YAVHISRLSASGRYLFVI-GRD---GKVNMIDLWMKEPTTVAEIKIGSEA----------R 243 (567)
T ss_dssp --TCCEEEEEECS------SCEEEEEECTTSCEEEEE-ETT---SEEEEEETTSSSCCEEEEEECCSEE----------E
T ss_pred --CCeEEEEEeCC------CCccceEECCCCCEEEEE-cCC---CeEEEEECCCCCCcEeEEEecCCCC----------c
Confidence 22222 22222 234578999999998654 332 24666663 33333333333333 4
Q ss_pred ceeec----CCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee
Q 004141 157 GISWN----SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA 232 (771)
Q Consensus 157 ~~~wS----pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~ 232 (771)
.+.|| |||++|+...+. .+.+.++|..+.++..
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~-------------------------------------------~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYW-------------------------------------------PPQYVIMDGETLEPKK 280 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEE-------------------------------------------TTEEEEEETTTCCEEE
T ss_pred eeEEccccCCCCCEEEEEEcc-------------------------------------------CCeEEEEECCCCcEEE
Confidence 88999 799988776443 2678889988877655
Q ss_pred ccCCCC----------CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcC
Q 004141 233 VKGIPK----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES 302 (771)
Q Consensus 233 l~~~~~----------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 302 (771)
...+.. ...+..+..|+++.. +++... ...+|+.+|.
T Consensus 281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~----~vv~~~--------------~~g~v~~vd~--------------- 327 (567)
T 1qks_A 281 IQSTRGMTYDEQEYHPEPRVAAILASHYRPE----FIVNVK--------------ETGKILLVDY--------------- 327 (567)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSE----EEEEET--------------TTTEEEEEET---------------
T ss_pred EEeccccccccccccCCCceEEEEEcCCCCE----EEEEec--------------CCCeEEEEec---------------
Confidence 411111 113456677888765 444331 2348999997
Q ss_pred CCCCCc---ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccC
Q 004141 303 SSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 303 ~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
.... ...+. .........|+|||++++...+. ...|.++|+.+++... .+++- ..
T Consensus 328 --~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~----------sn~V~ViD~~t~kl~~-------~i~vg--g~ 385 (567)
T 1qks_A 328 --TDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANA----------RNKLVVIDTKEGKLVA-------IEDTG--GQ 385 (567)
T ss_dssp --TCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGG----------GTEEEEEETTTTEEEE-------EEECS--SS
T ss_pred --CCCccceeeeee-ccccccCceECCCCCEEEEEeCC----------CCeEEEEECCCCcEEE-------EEecc--Cc
Confidence 3221 11121 12234456899999987665543 3569999998765311 11110 00
Q ss_pred CCCCcccccCCCCCCc-cccCCCEEEEEeeeCCeeEEEEEECCCC-------c-EEEecCCCCCceeeEEeecCCEEEEE
Q 004141 380 GDCFPGLYSSSILSNP-WLSDGCTMLLSSIWGSSQVIISVNVSSG-------E-LLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 380 ~~~f~g~~~~~~~~~~-~s~Dg~~l~~~~~~~~~~~l~~~d~~tg-------~-~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
...|| .... +.|++..++++.. -+...+..|+.+++ + ++.+............+|+++++++.
T Consensus 386 -~Phpg------~g~~~~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~ 457 (567)
T 1qks_A 386 -TPHPG------RGANFVHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVD 457 (567)
T ss_dssp -SBCCT------TCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEE
T ss_pred -CCCCc------cceeeECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEe
Confidence 01111 1222 4788777765543 33345777787762 3 34443322211234568899988865
Q ss_pred Ee-CCC--CCCeEEEEEeccc
Q 004141 451 SS-SPV--DVPQVKYGYFVDK 468 (771)
Q Consensus 451 ~~-~~~--~p~~l~~~~~~~~ 468 (771)
.. +++ ....+.++++.+.
T Consensus 458 ~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 458 ATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CTTCSSHHHHTCEEEEEGGGC
T ss_pred cCCCCCcccCceEEEEECCcc
Confidence 42 221 1236888887644
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=104.21 Aligned_cols=197 Identities=13% Similarity=0.037 Sum_probs=105.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.+.|+++||.+.. ...|...+..|.. |.|+.+|++| ++. ..+++.+.++.+. ..+
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIE---EED-------------RLDRYADLIQKLQ-----PEG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCC---STT-------------HHHHHHHHHHHHC-----CSS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCC---HHH-------------HHHHHHHHHHHhC-----CCC
Confidence 4789999997654 3467777777754 9999999997 321 1345555555431 135
Q ss_pred eEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccchh--hhhcCCCCCcch-hhhhccCCCCccCCCCCC-hhhHH
Q 004141 617 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLA--LMVGTTDIPDWC-YVESYGSKGKDSFTESPS-VEDLT 689 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 689 (771)
++.++|||+||.++..++.+. ++.++++++.++..... .+.......... +... .......+ .+. .....
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 148 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNV-NRDNEALN--SEAVKHGLK 148 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHH-TTTCSGGG--SHHHHHHHH
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCCCCcccccccccHHHHHHHHHhc-Chhhhhhh--hHHHHHHHH
Confidence 799999999999999998765 35688888877653211 000000000000 0000 00000000 000 00000
Q ss_pred ----HHhhcCc-ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc--cCCCCCChHHHHHHH
Q 004141 690 ----RFHSKSP-ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH--GIERPQSDFESFLNI 762 (771)
Q Consensus 690 ----~~~~~sp-~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H--~~~~~~~~~~~~~~i 762 (771)
.+..... .....++++|+++++|++|..++. ....+.+ ....+++++.+++ +| .+. .+....+...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~-~~~~w~~---~~~~~~~~~~i~g-~H~~~~~-~~~~~~~~~~i 222 (230)
T 1jmk_C 149 QKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPE-WLASWEE---ATTGAYRMKRGFG-THAEMLQ-GETLDRNAGIL 222 (230)
T ss_dssp HHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCT-TEECSGG---GBSSCEEEEECSS-CGGGTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccccccccEEEEEeCCCCCCcc-ccchHHH---hcCCCeEEEEecC-ChHHHcC-cHhHHHHHHHH
Confidence 0000000 023467889999999999998862 2212211 1123588999997 88 443 22233444555
Q ss_pred HHHHH
Q 004141 763 GLWFK 767 (771)
Q Consensus 763 ~~fl~ 767 (771)
.+||.
T Consensus 223 ~~~l~ 227 (230)
T 1jmk_C 223 LEFLN 227 (230)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55553
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.1e-07 Score=98.79 Aligned_cols=296 Identities=10% Similarity=0.064 Sum_probs=162.5
Q ss_pred eechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEE
Q 004141 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKE 138 (771)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (771)
+..-+..+...+.+.+|++... .....+. ...+.+...+|+|++ .++..+..+ .+.+| ..++....
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~-~~~~~~~-----~h~~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~ 198 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINK-KFLLQLS-----GHDGGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKGCCTHV 198 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTT-EEEEEEC-----CCSSCEEEEEECSTT-EEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCC-cEEEEEe-----CCCcCEEEEEEcCCC-EEEEEeCCC-----CEEEEECCCCcEEEE
Confidence 3334444555677888776332 1112222 123568899999999 565544432 35555 23333333
Q ss_pred EecCCcccccccCCCcccceeec--CCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc---------------------C
Q 004141 139 FHVPQTVHGSVYADGWFEGISWN--SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD---------------------C 195 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wS--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~ 195 (771)
... ..+ .+..+.|+ |+++.|+..+.+.... .|+............ .
T Consensus 199 ~~~---h~~------~v~~l~~~~~~~~~~l~s~s~d~~i~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 199 FEG---HNS------TVRCLDIVEYKNIKYIVTGSRDNTLH--VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp ECC---CSS------CEEEEEEEESSSCEEEEEEETTSCEE--EEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred ECC---CCC------ccEEEEEecCCCCCEEEEEcCCCcEE--EeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 221 111 12577777 6888888877655432 222211111000000 0
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeee
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 275 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~ 275 (771)
........+.++....+++..+..|.+||+.+++..... ......+..+.|+|||+. |+..+
T Consensus 268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~sg~------------- 329 (464)
T 3v7d_B 268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS------------- 329 (464)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE-------------
T ss_pred CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCE----EEEEe-------------
Confidence 000001112333334555666789999999988765541 334456888999999997 77655
Q ss_pred ccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 276 YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 276 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
.+..|.++|+ .+++ ...+..+...+....|+ ++.|+..+.+ ..|.+|
T Consensus 330 --~dg~i~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d-----------g~v~vw 377 (464)
T 3v7d_B 330 --MDTTIRIWDL-----------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGW 377 (464)
T ss_dssp --TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEEC--SSEEEEEETT-----------SEEEEE
T ss_pred --CCCcEEEEEC-----------------CCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCC-----------CcEEEE
Confidence 3347888898 4444 45566666677788887 5777766654 248899
Q ss_pred ecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCC
Q 004141 355 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN 434 (771)
Q Consensus 355 d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~ 434 (771)
|+.++....... ........+|++|++.|+.. . ++ .+..+|+.+|+..........
T Consensus 378 d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~-~-dg--~i~iwd~~~g~~~~~~~~~~~ 433 (464)
T 3v7d_B 378 DANDYSRKFSYH--------------------HTNLSAITTFYVSDNILVSG-S-EN--QFNIYNLRSGKLVHANILKDA 433 (464)
T ss_dssp ETTTCCEEEEEE--------------------CTTCCCEEEEEECSSEEEEE-E-TT--EEEEEETTTCCEEESCTTTTC
T ss_pred ECCCCceeeeec--------------------CCCCccEEEEEeCCCEEEEe-c-CC--eEEEEECCCCcEEehhhccCC
Confidence 987654211000 00123456799999866543 3 44 466668889987763211111
Q ss_pred ceeeEEeecCCEEEEEEeC
Q 004141 435 FSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 435 ~~~~~~s~dg~~l~~~~~~ 453 (771)
.....++.+++.++++.+.
T Consensus 434 ~~v~~v~~~~~~l~~~~~~ 452 (464)
T 3v7d_B 434 DQIWSVNFKGKTLVAAVEK 452 (464)
T ss_dssp SEEEEEEEETTEEEEEEEE
T ss_pred CcEEEEEecCCEEEEEEEe
Confidence 2333444467777766654
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-08 Score=105.40 Aligned_cols=266 Identities=8% Similarity=-0.014 Sum_probs=143.4
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCc
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQT 144 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (771)
+......+.+.+|++... .....+... ...+...+|+|+|+.|+..... +.-.+|.++.......+.... .
T Consensus 32 l~s~~~dg~v~vw~~~~~-~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d--g~i~~~~~~~~~~~~~~~~~~-~ 102 (313)
T 3odt_A 32 VASVSRDGTVRLWSKDDQ-WLGTVVYTG-----QGFLNSVCYDSEKELLLFGGKD--TMINGVPLFATSGEDPLYTLI-G 102 (313)
T ss_dssp EEEEETTSEEEEEEESSS-EEEEEEEEC-----SSCEEEEEEETTTTEEEEEETT--SCEEEEETTCCTTSCC-CEEC-C
T ss_pred EEEEEcCCcEEEEECCCC-EEEEEeecC-----CccEEEEEECCCCCEEEEecCC--CeEEEEEeeecCCCCcccchh-h
Confidence 334445567888777332 112222222 2568889999999999877653 333344444222111111111 1
Q ss_pred ccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEE
Q 004141 145 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVI 223 (771)
Q Consensus 145 ~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~ 223 (771)
..+ .+..+.| +++.|+..+.+.... .|+ ..........+........+.+ +....+++.....|.+|
T Consensus 103 ~~~------~i~~~~~--~~~~l~~~~~d~~i~--~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 103 HQG------NVCSLSF--QDGVVISGSWDKTAK--VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170 (313)
T ss_dssp CSS------CEEEEEE--ETTEEEEEETTSEEE--EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ccc------CEEEEEe--cCCEEEEEeCCCCEE--EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEE
Confidence 111 1246667 677777766554321 222 0000001111222222334444 44455556667889999
Q ss_pred EccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCC
Q 004141 224 NINSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 303 (771)
Q Consensus 224 d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 303 (771)
|.. .....+. ......+..+.|+|+++ ++..+ ....|+++|+
T Consensus 171 d~~-~~~~~~~-~~~~~~i~~~~~~~~~~-----~~~~~---------------~dg~i~i~d~---------------- 212 (313)
T 3odt_A 171 QND-KVIKTFS-GIHNDVVRHLAVVDDGH-----FISCS---------------NDGLIKLVDM---------------- 212 (313)
T ss_dssp ETT-EEEEEEC-SSCSSCEEEEEEEETTE-----EEEEE---------------TTSEEEEEET----------------
T ss_pred ecC-ceEEEEe-ccCcccEEEEEEcCCCe-----EEEcc---------------CCCeEEEEEC----------------
Confidence 932 2233331 22555788999999986 55444 3347888998
Q ss_pred CCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCC
Q 004141 304 SEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC 382 (771)
Q Consensus 304 ~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (771)
.+++ ...+..+...+....|+|||+ |+..+.+ ..|++||+.+++..... ...
T Consensus 213 -~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~d-----------g~v~iwd~~~~~~~~~~----------~~~---- 265 (313)
T 3odt_A 213 -HTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGED-----------RTVRIWSKENGSLKQVI----------TLP---- 265 (313)
T ss_dssp -TTCCEEEEEECCSSCEEEEEECTTSC-EEEEETT-----------SEEEEECTTTCCEEEEE----------ECS----
T ss_pred -CchhhhhhhhcCCceEEEEEEecCCC-EEEEecC-----------CEEEEEECCCCceeEEE----------ecc----
Confidence 4444 455556677789999999994 6655543 35899998876542111 000
Q ss_pred CcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE
Q 004141 383 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 425 (771)
Q Consensus 383 f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~ 425 (771)
...+..++|+|||+ ++ +...++...+| ++.+++.
T Consensus 266 -----~~~i~~~~~~~~~~-~~-~~~~dg~i~iw--~~~~~~~ 299 (313)
T 3odt_A 266 -----AISIWSVDCMSNGD-II-VGSSDNLVRIF--SQEKSRW 299 (313)
T ss_dssp -----SSCEEEEEECTTSC-EE-EEETTSCEEEE--ESCGGGC
T ss_pred -----CceEEEEEEccCCC-EE-EEeCCCcEEEE--eCCCCce
Confidence 01245678999998 43 34445554555 6666543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.3e-08 Score=102.21 Aligned_cols=199 Identities=11% Similarity=0.035 Sum_probs=110.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC--CCCeEEEEecCCCCCCeEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~~~~~~ 127 (771)
++||+.|+... ..+.+.+|++.........+. .+......+...+|+| ||+.|+.....+ .-.+|
T Consensus 20 ~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--~v~vw 86 (351)
T 3f3f_A 20 DFYGRHVATCS---------SDQHIKVFKLDKDTSNWELSD--SWRAHDSSIVAIDWASPEYGRIIASASYDK--TVKLW 86 (351)
T ss_dssp CSSSSEEEEEE---------TTSEEEEEEECSSSCCEEEEE--EEECCSSCEEEEEECCGGGCSEEEEEETTS--CEEEE
T ss_pred cCCCCEEEEee---------CCCeEEEEECCCCCCcceecc--eeccCCCcEEEEEEcCCCCCCEEEEEcCCC--eEEEE
Confidence 56777766542 335677777754432211111 1111225688999999 699988776532 23333
Q ss_pred EEecCCc-----c-eEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 128 ELWSQSQ-----L-EKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 128 ~~~~~~~-----~-~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.+..+.. . ..+.... ...+ .+..+.|+|+ ++.|+..+.+
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~-~~~~------~v~~~~~~~~~~~~~l~~~~~d-------------------------- 133 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLN-DSKG------SLYSVKFAPAHLGLKLACLGND-------------------------- 133 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEEC-CCSS------CEEEEEECCGGGCSEEEEEETT--------------------------
T ss_pred ecCCCcccccccCcceeeeec-ccCC------ceeEEEEcCCCCCcEEEEecCC--------------------------
Confidence 3332211 0 2222221 1111 2368999999 9988886432
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeec----------c--CCCCCCccceEEEecC---CCCCccEEEEEeec
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAV----------K--GIPKSLSVGQVVWAPL---NEGLHQYLVFVGWS 264 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l----------~--~~~~~~~~~~~~wspD---g~~~~~~l~~~~~~ 264 (771)
..|.+||+.+++.... . .......+..+.|+|+ ++. |+..+.
T Consensus 134 ------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----l~~~~~- 190 (351)
T 3f3f_A 134 ------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK----LAVSAL- 190 (351)
T ss_dssp ------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE----EEEEET-
T ss_pred ------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE----EEEecC-
Confidence 5778888776653211 0 0123346778899998 664 555541
Q ss_pred CcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCC----CEEEEEecC
Q 004141 265 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG----KFLVFLSAK 337 (771)
Q Consensus 265 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG----~~l~f~~~~ 337 (771)
...+...+. ..+. ...+..+...+....|+|+| +.|+..+.+
T Consensus 191 --------------~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 191 --------------EQAIIYQRG-----------------KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp --------------TEEEEEEEC-----------------TTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred --------------CCcEEEEcc-----------------CCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 113333333 3333 34455566678899999999 666655544
Q ss_pred CCCCCCCccccccceeeecCCC
Q 004141 338 SSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
. .|.+||+.++
T Consensus 240 g-----------~i~iwd~~~~ 250 (351)
T 3f3f_A 240 G-----------RIRIFKITEK 250 (351)
T ss_dssp S-----------CEEEEEEEEC
T ss_pred C-----------eEEEEeCCCC
Confidence 2 4777777654
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=106.04 Aligned_cols=192 Identities=7% Similarity=-0.014 Sum_probs=109.2
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 615 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 615 (771)
..+.||++||.+.. ...|...+..|. .+|.|+.+|++| ++. ..+++.+.++.+ . ..
T Consensus 21 ~~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g---~~~-------------~~~~~~~~i~~~---~--~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIE---EDS-------------RIEQYVSRITEI---Q--PE 76 (244)
T ss_dssp CSSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCC---STT-------------HHHHHHHHHHHH---C--SS
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCC---HHH-------------HHHHHHHHHHHh---C--CC
Confidence 35779999997655 346777777775 689999999998 211 144555544433 1 13
Q ss_pred CeEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCC-hhhH---
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-VEDL--- 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 688 (771)
+++.++||||||.++..++.+. ++.+.++++.++....... ..... ... ...+. .+. ....
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~~~~~~---~~~~~---~~~-----~~~~~-~~~~~~~~~~~ 144 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYKKDQSI---TADTE---NDD-----SAAYL-PEAVRETVMQK 144 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCCCSCC---CCC---------------CCS-CHHHHHHHTHH
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCCCcccc---ccccc---HHH-----HHHHh-HHHHHHHHHHH
Confidence 5799999999999999998764 5678888887765321000 00000 000 00000 000 0000
Q ss_pred -HHHhhcCc-ccccCCCCCcEEEEeeC--CCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCcc-CCCCCChHHHHHHH
Q 004141 689 -TRFHSKSP-ISHISKVKTPTIFLLGA--QDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHG-IERPQSDFESFLNI 762 (771)
Q Consensus 689 -~~~~~~sp-~~~~~~i~~P~lii~G~--~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~-~~~~~~~~~~~~~i 762 (771)
..+..... ......+++|+++++|+ +|.. +++.... +... ..++++..+++ +|. +...+....+...+
T Consensus 145 ~~~~~~~~~~~~~~~~i~~Pvl~i~g~~~~D~~-~~~~~~~----w~~~~~~~~~~~~i~g-gH~~~~~~~~~~~~~~~i 218 (244)
T 2cb9_A 145 KRCYQEYWAQLINEGRIKSNIHFIEAGIQTETS-GAMVLQK----WQDAAEEGYAEYTGYG-AHKDMLEGEFAEKNANII 218 (244)
T ss_dssp HHHHHHHHHHCCCCSCBSSEEEEEECSBCSCCC-HHHHTTS----SGGGBSSCEEEEECSS-BGGGTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcCCCEEEEEccCccccc-cccchhH----HHHhcCCCCEEEEecC-ChHHHcChHHHHHHHHHH
Confidence 00111000 12346788999999999 8873 3332222 2221 23588999986 883 33233444666778
Q ss_pred HHHHHHh
Q 004141 763 GLWFKKY 769 (771)
Q Consensus 763 ~~fl~~~ 769 (771)
.+||.+.
T Consensus 219 ~~~L~~~ 225 (244)
T 2cb9_A 219 LNILDKI 225 (244)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 8888643
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=118.12 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=90.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHHH-CCcEEEEECCCCC-CCCChhhhhcCCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSS-VGYSLLIVNYRGS-LGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la~-~G~~Vv~~d~rG~-~~~g~~~~~~~~~~ 591 (771)
+.|.+.+ .+|.|... .++.|+||++|||++....... ......|++ .|++|+.+|||.. -||.... ..+..
T Consensus 89 ~edcl~l--nv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 162 (529)
T 1p0i_A 89 SEDCLYL--NVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEA 162 (529)
T ss_dssp CSCCCEE--EEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTS
T ss_pred CCcCCeE--EEeeCCCC--CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCC--CCCCC
Confidence 3455555 47788642 2678999999998876544322 122355555 7999999999942 1121110 00112
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++ ...|++||.|+|+|.||.++..++... ..+|+++|+.+|..
T Consensus 163 ~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 227 (529)
T 1p0i_A 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 227 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcc
Confidence 2334488999999999875 247999999999999999999888753 45899999999864
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-09 Score=108.65 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=77.5
Q ss_pred CCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcC
Q 004141 535 SCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 611 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 611 (771)
+..|+||++||.+.... ...|......|.++||.|+++|++| +|.+. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g---~g~s~----------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCC---CCCch----------hhHHHHHHHHHHHHHH-
Confidence 34578999999765431 2357778889999999999999998 44332 1245555555555554
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+.++|.|+||||||.++..++.++|+.++++|++++..
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 245689999999999999999999999999999988753
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.91 E-value=3.3e-08 Score=104.20 Aligned_cols=237 Identities=13% Similarity=0.076 Sum_probs=125.3
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCccc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH 146 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 146 (771)
..+.+.++++... .....+... ...+...+|+| +|+.|+.....+ .+.+| ..++............
T Consensus 93 ~dg~i~v~d~~~~-~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 93 SRGIIRIINPITM-QCIKHYVGH-----GNAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp TTCEEEEECTTTC-CEEEEEESC-----CSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECSTTSCS
T ss_pred CCCEEEEEEchhc-eEeeeecCC-----CCcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEeccccccc
Confidence 4457777776432 122222212 25688999999 899888766543 34555 2333333331101111
Q ss_pred ccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc
Q 004141 147 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 226 (771)
Q Consensus 147 g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 226 (771)
+ .+..+.|+|||+.|+..+.+ ..|.+||+.
T Consensus 162 ~------~v~~~~~~~~~~~l~~~~~d--------------------------------------------g~i~i~d~~ 191 (366)
T 3k26_A 162 D------EVLSADYDLLGEKIMSCGMD--------------------------------------------HSLKLWRIN 191 (366)
T ss_dssp S------CEEEEEECTTSSEEEEEETT--------------------------------------------SCEEEEESC
T ss_pred C------ceeEEEECCCCCEEEEecCC--------------------------------------------CCEEEEECC
Confidence 1 23689999999998886543 356666666
Q ss_pred CCceeecc---------------------------CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 227 SGEVQAVK---------------------------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 227 ~~~~~~l~---------------------------~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
+++..... .......+..+.|+ ++. |+..+ .+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~----l~~~~---------------~d 250 (366)
T 3k26_A 192 SKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL----ILSKS---------------CE 250 (366)
T ss_dssp SHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE----EEEEC---------------SS
T ss_pred CCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE----EEEEe---------------cC
Confidence 54322110 01134456778888 554 55554 23
Q ss_pred ceeEEEecccccchhhhhhhhcCCCC-CCcceecCCCCccccceeecCC--CCEEEEEecCCCCCCCCccccccceeeec
Q 004141 280 CALYAVRVSLYKSEASELELKESSSE-DLPVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDW 356 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~lt~~~~~~~~p~~SpD--G~~l~f~~~~~~~~~g~~~~~~~l~~~d~ 356 (771)
..|.++|+.... ..+........ ......+..+...+....|||| |+.|+..+.+ ..|++||+
T Consensus 251 ~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----------g~i~vwd~ 316 (366)
T 3k26_A 251 NAIVCWKPGKME---DDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-----------GKLYVWDL 316 (366)
T ss_dssp SEEEEEEESSTT---CCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----------SCEEEEEC
T ss_pred CEEEEEeCCCcc---ccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----------CcEEEEEC
Confidence 367777762110 00000000000 0012333344556788999999 9988876654 25899998
Q ss_pred CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 357 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.+++..... ...+.... ....+..++|+|||+.|+ +...++...+|
T Consensus 317 ~~~~~~~~~------~~~~~~~~-------~~~~v~~~~~s~~~~~l~-s~~~dg~i~iw 362 (366)
T 3k26_A 317 EVEDPHKAK------CTTLTHHK-------CGAAIRQTSFSRDSSILI-AVCDDASIWRW 362 (366)
T ss_dssp CSSSGGGCE------EEEECCTT-------CCSCEEEEEECTTSSEEE-EEETTSEEEEE
T ss_pred CCCCCcccc------ceEEcccc-------cCCceEEEEeCCCCCeEE-EEeCCCEEEEE
Confidence 876542210 00000000 012355788999998664 55556655555
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=118.47 Aligned_cols=112 Identities=9% Similarity=0.011 Sum_probs=80.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||++... ...|.. .+..|.+ .||.|+++|+||. |.+........ .....+|+.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~---G~S~~~~~~~~-~~~~~~dl~~li~~L~~~~g 142 (452)
T 1bu8_A 68 LDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRG---SRTEYTQASYN-TRVVGAEIAFLVQVLSTEMG 142 (452)
T ss_dssp TTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHH---HSSCHHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhc---ccCchhHhHhh-HHHHHHHHHHHHHHHHHhcC
Confidence 4568999999977653 245665 4566665 4999999999984 33211000000 01224677777888865434
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|+.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 567899999999999999999999999999999988764
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-09 Score=117.77 Aligned_cols=131 Identities=21% Similarity=0.164 Sum_probs=90.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-hHHHHHHH-HCCcEEEEECCCCC-CCCChhhhhcCCCC
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYRGS-LGFGEEALQSLPGK 591 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~ 591 (771)
+.|.+.+ .+|.|... .++.|+||++|||++....... ......|+ +.|++|+.+|||.. -||.... .....
T Consensus 91 sedcl~l--nv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~~~~ 164 (537)
T 1ea5_A 91 SEDCLYL--NIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEA 164 (537)
T ss_dssp CSCCCEE--EEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSS
T ss_pred CCcCCeE--EEeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCC--CCCCC
Confidence 4455555 46778642 3678999999999876544322 12234555 78999999999942 1121110 00112
Q ss_pred ccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 004141 592 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~ 651 (771)
.+...+.|+.++++|+.++ ...|++||.|+|+|.||.++..++.. ...+|+++|+.+|..
T Consensus 165 ~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~ 229 (537)
T 1ea5_A 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 229 (537)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCc
Confidence 2334589999999999886 24699999999999999999988764 245899999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.88 E-value=8e-08 Score=112.15 Aligned_cols=241 Identities=11% Similarity=0.078 Sum_probs=141.9
Q ss_pred EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCC--CCeEEEEecCCC
Q 004141 45 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPEN 121 (771)
Q Consensus 45 ~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~ 121 (771)
..-..++||+.|+... ..+.+.+|++........ .+. ...+.+...+|||+ |+.|+..+..+
T Consensus 13 ~~l~~s~dg~~latg~---------~dg~I~vwd~~~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~~~l~s~s~Dg- 77 (753)
T 3jro_A 13 HDAVLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLT-----GHEGPVWRVDWAHPKFGTILASCSYDG- 77 (753)
T ss_dssp EEECCCSSSCCEEEEE---------TTTEEEEEEEETTEEEEEEEEC-----CCSSCEEEEEECCTTSCSEEEEEETTS-
T ss_pred EEEEECCCCCeEEEEE---------CCCcEEEEecCCCCCccceecc-----CCcCceEEEEecCCCCCCEEEEEeCCC-
Confidence 3344577888777653 234666666643221111 121 12256889999998 99998776543
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCC--CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCC
Q 004141 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 197 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (771)
.+.+| ..+....+.... ...+ .+.++.|+|+ |+.|+..+.
T Consensus 78 ----~I~vwd~~~~~~~~~~~~~-~h~~------~V~~v~~sp~~~~~~l~sgs~------------------------- 121 (753)
T 3jro_A 78 ----KVLIWKEENGRWSQIAVHA-VHSA------SVNSVQWAPHEYGPLLLVASS------------------------- 121 (753)
T ss_dssp ----CEEEEEEETTEEEEEEEEC-CCSS------CEEEEEECCGGGCSEEEEEET-------------------------
T ss_pred ----eEEEEECCCCccccccccc-CCCC------CeEEEEECCCCCCCEEEEEeC-------------------------
Confidence 33444 233322222221 1111 2268999999 888888643
Q ss_pred CCCcccccCCcCcccCCccCceEEEEEccCCc---eeeccCCCCCCccceEEEec-------------CCCCCccEEEEE
Q 004141 198 WKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFV 261 (771)
Q Consensus 198 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~---~~~l~~~~~~~~~~~~~wsp-------------Dg~~~~~~l~~~ 261 (771)
...|.+||+.++. ...+ ......+..+.|+| ||+. |+..
T Consensus 122 -------------------dg~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~----l~sg 176 (753)
T 3jro_A 122 -------------------DGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTG 176 (753)
T ss_dssp -------------------TSEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC---------CGGGCC----EEEE
T ss_pred -------------------CCcEEEEEeecCCCcceeEe--ecCCCceEEEEecCcccccccccccCCCCCE----EEEE
Confidence 3578999988773 2223 23445678899999 5776 7766
Q ss_pred eecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-----cceecCCCCccccceeecCC---CCEEEE
Q 004141 262 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-----PVVNLTESISSAFFPRFSPD---GKFLVF 333 (771)
Q Consensus 262 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~lt~~~~~~~~p~~SpD---G~~l~f 333 (771)
+ .+..|.++|+ .++ ....+..+...+...+|+|| |+.|+.
T Consensus 177 s---------------~dg~I~iwd~-----------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 177 G---------------ADNLVKIWKY-----------------NSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp E---------------TTSCEEEEEE-----------------ETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred E---------------CCCeEEEEec-----------------cCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 5 2335777776 222 12345566777999999999 888877
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
.+.+. .|.+||+.++.......-. . ... +...+..++|+|||+.|+ +...++..
T Consensus 225 ~s~Dg-----------~I~iwd~~~~~~~~~~~~~-------~---~~~----~~~~v~~l~~spdg~~l~-s~s~Dg~I 278 (753)
T 3jro_A 225 VSQDR-----------TCIIWTQDNEQGPWKKTLL-------K---EEK----FPDVLWRASWSLSGNVLA-LSGGDNKV 278 (753)
T ss_dssp EESSS-----------CEEEEEESSSSSCCBCCBS-------S---SSC----CSSCCCCEEECTTTCCEE-EECSSSCE
T ss_pred EecCC-----------EEEEecCCCCCCcceeEEe-------c---cCC----CCCceEEEEEcCCCCEEE-EEcCCCEE
Confidence 66553 4888888776432110000 0 000 112456789999998664 44456665
Q ss_pred EEEEEE
Q 004141 414 VIISVN 419 (771)
Q Consensus 414 ~l~~~d 419 (771)
.+|.++
T Consensus 279 ~vwd~~ 284 (753)
T 3jro_A 279 TLWKEN 284 (753)
T ss_dssp ECCBCC
T ss_pred EEEecC
Confidence 566443
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.8e-07 Score=100.11 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=126.6
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCC----cccccccCCCcccceeecC-CCCeEEEE
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ----TVHGSVYADGWFEGISWNS-DETLIAYV 170 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~wSp-Dg~~la~~ 170 (771)
+.+...+||| +|++||.....+ .+.+| ..+.......... .....-...+.+..+.|+| +++.|+..
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 5588899999 999998776532 34444 2222211111000 0000000112336899999 66666664
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecC
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 250 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspD 250 (771)
+. ...|.+||+.+++.... ......+....|+|+
T Consensus 119 ~~--------------------------------------------d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~ 152 (408)
T 4a11_B 119 SF--------------------------------------------DKTLKVWDTNTLQTADV--FNFEETVYSHHMSPV 152 (408)
T ss_dssp ET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEEEEECSS
T ss_pred eC--------------------------------------------CCeEEEeeCCCCcccee--ccCCCceeeeEeecC
Confidence 32 36899999999887666 344455678889986
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCC
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~ 329 (771)
+.. ...|+..+ ....|+++|+ .++ ....+..+...+....|+|+|+
T Consensus 153 ~~~-~~~~~~~~---------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 153 STK-HCLVAVGT---------------RGPKVQLCDL-----------------KSGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp CSS-CCEEEEEE---------------SSSSEEEEES-----------------SSSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CCC-CcEEEEEc---------------CCCeEEEEeC-----------------CCcceeeeecCCCCcEEEEEECCCCC
Confidence 541 01155443 3347888898 444 3556666777889999999999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce--eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
++++....+ ..|.+||+.++......... ....... ...+. .....+..++|+|||+.|+..
T Consensus 200 ~ll~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~- 263 (408)
T 4a11_B 200 YILATASAD----------SRVKLWDVRRASGCLITLDQHNGKKSQAV----ESANT-AHNGKVNGLCFTSDGLHLLTV- 263 (408)
T ss_dssp TEEEEEETT----------SCEEEEETTCSSCCSEECCTTTTCSCCCT----TTSSC-SCSSCEEEEEECTTSSEEEEE-
T ss_pred cEEEEEcCC----------CcEEEEECCCCCcccccccccccccceee----ccccc-cccCceeEEEEcCCCCEEEEe-
Confidence 754444332 34888888765421110000 0000000 00000 011234567899999976544
Q ss_pred eeCCeeEEEEEECCCCcEEE
Q 004141 408 IWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~ 427 (771)
..++. |..+|+.+++...
T Consensus 264 ~~dg~--i~vwd~~~~~~~~ 281 (408)
T 4a11_B 264 GTDNR--MRLWNSSNGENTL 281 (408)
T ss_dssp ETTSC--EEEEETTTCCBCC
T ss_pred cCCCe--EEEEECCCCccce
Confidence 44444 5555777776543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.88 E-value=4.9e-09 Score=107.85 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=78.5
Q ss_pred CCCcEEEEEcCCCCCCCC----CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004141 535 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~----~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
+..|+||++||....... ..|....+.|+++||.|+++|++|. |.+.. + ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g~---g~s~~---~----~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSGF---QSDDG---P----NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCSS---CCSSS---T----TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCCC---CCCCC---C----CCCHHHHHHHHHHHHHH
Confidence 345789999997654311 4577788999999999999999984 33211 0 12355666666655554
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.+.+++.|+||||||.++..++.++|++++++|++++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 245789999999999999999999999999999988754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.8e-08 Score=104.72 Aligned_cols=251 Identities=10% Similarity=0.005 Sum_probs=131.3
Q ss_pred eeEEEEEEeecCCCCc-cceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccc
Q 004141 71 KKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 147 (771)
.+.+.+|++...+... ..+... ...+...+|+|||++|+.....+ .+.+| ..+...++......+
T Consensus 63 dg~i~iw~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~dg-----~v~iwd~~~~~~~~~~~~~~~v-- 130 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQTIPKAQQMH-----TGPVLDVCWSDDGSKVFTASCDK-----TAKMWDLSSNQAIQIAQHDAPV-- 130 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECSSCE--
T ss_pred CCcEEEEEcCCCCceeEEEeccc-----cCCEEEEEECcCCCEEEEEcCCC-----cEEEEEcCCCCceeeccccCce--
Confidence 4567777775433222 222222 25688999999999998776543 55566 333433333322223
Q ss_pred cccCCCcccceee--cCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 148 SVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 148 ~~~~~~~~~~~~w--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
..+.| +|||+.|+..+.+.... .|+............. . ............+.......+.+|++
T Consensus 131 --------~~~~~~~~~~~~~l~~~~~dg~i~--vwd~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 197 (368)
T 3mmy_A 131 --------KTIHWIKAPNYSCVMTGSWDKTLK--FWDTRSSNPMMVLQLP-E--RCYCADVIYPMAVVATAERGLIVYQL 197 (368)
T ss_dssp --------EEEEEEECSSCEEEEEEETTSEEE--EECSSCSSCSEEEECS-S--CEEEEEEETTEEEEEEGGGCEEEEEC
T ss_pred --------EEEEEEeCCCCCEEEEccCCCcEE--EEECCCCcEEEEEecC-C--CceEEEecCCeeEEEeCCCcEEEEEe
Confidence 68899 99999888877655322 2322111111100000 0 00111111123334445677888888
Q ss_pred cCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004141 226 NSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 226 ~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
......... ............+.+++......++..+ .+..|.++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~dg~i~i~~~----------------- 245 (368)
T 3mmy_A 198 ENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS---------------IEGRVAIHYI----------------- 245 (368)
T ss_dssp SSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE---------------TTSEEEEEES-----------------
T ss_pred ccccchhhhccccccCCCceEEEcccCCCCCCeEEEec---------------CCCcEEEEec-----------------
Confidence 765432221 1122223444555555542111122222 3346777776
Q ss_pred CCCc----ceecCCCCc------------cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 305 EDLP----VVNLTESIS------------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 305 ~~~~----~~~lt~~~~------------~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
.... ...+..+.. .+....|||||+.|+..+.+. .|.+||+.+++.......
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~- 313 (368)
T 3mmy_A 246 NPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-----------RFSFWDKDARTKLKTSEQ- 313 (368)
T ss_dssp SCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-----------CEEEEETTTTEEEEECCC-
T ss_pred CCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-----------eEEEEECCCCcEEEEecC-
Confidence 2221 122222221 578899999999988777553 489999887553211110
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEee
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 408 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~ 408 (771)
+...+..++|+|||+.|+..+.
T Consensus 314 ------------------~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 314 ------------------LDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ------------------CSSCEEEEEECTTSSCEEEEEC
T ss_pred ------------------CCCCceEEEECCCCCeEEEEec
Confidence 1113457889999998776654
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=116.78 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=79.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHHC-CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~-G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||.+... ...|.. .+..|+++ ||.|+++|+||. |.+...... .......+|+.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~---G~S~~~~~~-~~~~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSG---AKAEYTQAV-QNIRIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHH---HTSCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccc---cccccHHHH-HhHHHHHHHHHHHHHHHHHhcC
Confidence 4468999999976653 235655 56677654 999999999984 332110000 0001124567777787765433
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+|||+||.+|..++.++|++++++++.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 557899999999999999999999999999999988764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=97.45 Aligned_cols=199 Identities=12% Similarity=0.059 Sum_probs=114.1
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCc-ccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
..+....|||+ .||..+... ...+|+ .+....+..+... ..+. +..++|||||+.|+..+.+
T Consensus 15 ~~v~~~~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~------v~~v~~sp~~~~las~s~D-- 79 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKA------IRSVAWRPHTSLLAAGSFD-- 79 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSC------EEEEEECTTSSEEEEEETT--
T ss_pred CceeeeccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCC------EEEEEECCCCCEEEEEeCC--
Confidence 44778889998 666554432 344552 2222222222112 2122 3689999999988886543
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCC-------c-eeeccCCCCCCccceEEE
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-------E-VQAVKGIPKSLSVGQVVW 247 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~-------~-~~~l~~~~~~~~~~~~~w 247 (771)
..|.+||+..+ + ...+ ......+..++|
T Consensus 80 ------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~ 115 (330)
T 2hes_X 80 ------------------------------------------STVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAW 115 (330)
T ss_dssp ------------------------------------------SCEEEEEC-------CCCEEEEEE--C----CEEEEEE
T ss_pred ------------------------------------------CcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEE
Confidence 45677776432 1 1223 233446788999
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC---c-ceecCCCCcccccee
Q 004141 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---P-VVNLTESISSAFFPR 323 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~-~~~lt~~~~~~~~p~ 323 (771)
+|||+. |+..+ .+..|.++|+. .++ + ...+..+...+....
T Consensus 116 sp~g~~----las~s---------------~D~~v~iwd~~----------------~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 116 SNDGYY----LATCS---------------RDKSVWIWETD----------------ESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CTTSCE----EEEEE---------------TTSCEEEEECC----------------TTCCCCEEEEEECCCSSCEEEEE
T ss_pred CCCCCE----EEEEe---------------CCCEEEEEecc----------------CCCCCeEEEEEeccCCCceEEEE
Confidence 999997 77665 23367777762 111 1 244566677789999
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC-E
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC-T 402 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~-~ 402 (771)
|+|||+.|+..+.+. .|.+||..++.... ...+.. +...+..+.|+|++. .
T Consensus 161 ~~p~~~~l~s~s~D~-----------~i~iW~~~~~~~~~--------~~~~~~---------h~~~v~~~~~~~~~~~~ 212 (330)
T 2hes_X 161 WHPSEALLASSSYDD-----------TVRIWKDYDDDWEC--------VAVLNG---------HEGTVWSSDFDKTEGVF 212 (330)
T ss_dssp ECSSSSEEEEEETTS-----------CEEEEEEETTEEEE--------EEEECC---------CSSCEEEEEECCSSSSC
T ss_pred ECCCCCEEEEEcCCC-----------eEEEEECCCCCeeE--------EEEccC---------CCCcEEEEEecCCCCee
Confidence 999999988777653 37777765432111 111100 011244567999832 3
Q ss_pred EEEEeeeCCeeEEEEEE
Q 004141 403 MLLSSIWGSSQVIISVN 419 (771)
Q Consensus 403 l~~~~~~~~~~~l~~~d 419 (771)
++++...++...||.+.
T Consensus 213 ~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 213 RLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEEeCCCeEEEEEec
Confidence 45666777888888765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-07 Score=101.33 Aligned_cols=261 Identities=10% Similarity=0.039 Sum_probs=135.7
Q ss_pred hhcccceeEEEEEEeec---CCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEE
Q 004141 65 LLANKRKKFMLSTVISK---ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEF 139 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~---~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~ 139 (771)
+..+...+.+.+|++.. .......++.. ....+...+|+|+|+.|+..+.. +.-.+|.+. ..+...+..
T Consensus 79 l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~l~s~s~d--g~i~vwd~~~~~~~~~~~~~ 152 (437)
T 3gre_A 79 LITGSDQGVIKIWNLKEIIVGEVYSSSLTYD----CSSTVTQITMIPNFDAFAVSSKD--GQIIVLKVNHYQQESEVKFL 152 (437)
T ss_dssp EEEEETTSEEEEEEHHHHHTTCCCSCSEEEE----CSSCEEEEEECTTSSEEEEEETT--SEEEEEEEEEEEETTEEEEE
T ss_pred EEEecCCceEEEeECcccccCcccceeeecc----CCCCEEEEEEeCCCCEEEEEeCC--CEEEEEEeccccCCceeecc
Confidence 33444556788887754 21011122211 12568899999999999876654 333344443 133322222
Q ss_pred ecCCccccccc----CCCccccee--ecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccC
Q 004141 140 HVPQTVHGSVY----ADGWFEGIS--WNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYA 213 (771)
Q Consensus 140 ~~~~~~~g~~~----~~~~~~~~~--wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~ 213 (771)
... .+....+ .++....+. |+||++.|+..+.
T Consensus 153 ~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------------------------- 190 (437)
T 3gre_A 153 NCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN----------------------------------------- 190 (437)
T ss_dssp EEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----------------------------------------
T ss_pred ccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----------------------------------------
Confidence 111 1100000 011112333 6677877766532
Q ss_pred CccCceEEEEEccCCceeec-cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 214 GKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 214 ~~~~~~l~v~d~~~~~~~~l-~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
...|.+||+.+++.... .+.+....+..++|+|||+. |+..+ .+..|.++|+
T Consensus 191 ---d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~---------------~dg~i~iwd~----- 243 (437)
T 3gre_A 191 ---LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV----LILGT---------------TRGIIDIWDI----- 243 (437)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE----EEEEE---------------TTSCEEEEET-----
T ss_pred ---CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEEEc-----
Confidence 36899999988876444 21113457889999999986 66655 3346888887
Q ss_pred hhhhhhhhcCCCCCCcc-eecC-CCCccccce----eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004141 293 EASELELKESSSEDLPV-VNLT-ESISSAFFP----RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~-~~lt-~~~~~~~~p----~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
..++. ..+. .+...+... .|+|||+.|+..+.+ ..|.+||+.+++......
T Consensus 244 ------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 244 ------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----------TFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp ------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----------EEEEEEETTTTEEEEEEE
T ss_pred ------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC-----------CcEEEEEcCCCcEEEEEE
Confidence 44443 3332 334445555 777888877765544 358899988765322111
Q ss_pred ceeeEEecccc-cC-----CCCCcc-cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 367 KIVDVIPVVQC-AE-----GDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 367 ~~~~~~~~~~~-~~-----~~~f~g-~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
+.......... +. +..+.| .+...+..++|+ +++ ++++...++. |..+|+.+++...
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~~--i~~wd~~~~~~~~ 364 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATSS--IVMFSLNELSSSK 364 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGTE--EEEEETTCGGGCE
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCCe--EEEEECCCcccce
Confidence 11000000000 00 001111 122235677888 665 5556555554 5555887776443
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-09 Score=107.78 Aligned_cols=122 Identities=18% Similarity=0.160 Sum_probs=86.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--------CCCcc----hHHHHHHHHCCcE---EEEECCCCCCCCChhhh
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--------SLSSY----SKSLAFLSSVGYS---LLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~--------~~~~~----~~~~~~la~~G~~---Vv~~d~rG~~~~g~~~~ 585 (771)
+.+....|. .. ..+.||++||.+... ....| ...+..|.++||. |+++|++| +|.+..
T Consensus 28 ~gG~~~~p~---~~-~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~ 100 (342)
T 2x5x_A 28 YGGFGGGSC---TA-TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLS---SSEQGS 100 (342)
T ss_dssp SCEEECCSS---CC-CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSC---HHHHTC
T ss_pred cCcccCCCC---CC-CCCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCC---CCccCC
Confidence 345555554 22 334599999976632 13356 6788899999998 99999998 444321
Q ss_pred hcCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 004141 586 QSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~ 652 (771)
... ........+++.+.++.+.+.. +.+++.|+||||||.++..++.++ |++++++|+.+|...
T Consensus 101 ~~~-~~~~~~~~~~l~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 101 AQY-NYHSSTKYAIIKTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp GGG-CCBCHHHHHHHHHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred ccc-cCCHHHHHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 110 0112234677888888877652 347899999999999999999988 889999999988654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-06 Score=90.13 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=146.7
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....|||++ .||...+. ...+| ..++..++...... .+ .+.++.|+|||++|+..+.
T Consensus 28 ~~~l~WS~~~-~lAvg~D~------tV~iWd~~tg~~~~~~~~~~~-~~------~V~~v~~~~~~~~l~sgs~------ 87 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQP-GE------YISSVAWIKEGNYLAVGTS------ 87 (318)
T ss_dssp CBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCST-TC------CEEEEEECTTSSEEEEEET------
T ss_pred ceEEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecCC-CC------eEEEEEECCCCCEEEEEEC------
Confidence 3568999987 67764321 35567 35555555543211 11 2268999999999987643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
+..|.+||+.+++.... .... ......++++++. +
T Consensus 88 --------------------------------------Dg~v~iw~~~~~~~~~~--~~~h-~~~~~~~~~~~~~----l 122 (318)
T 4ggc_A 88 --------------------------------------SAEVQLWDVQQQKRLRN--MTSH-SARVGSLSWNSYI----L 122 (318)
T ss_dssp --------------------------------------TSEEEEEETTTTEEEEE--EECC-SSCEEEEEEETTE----E
T ss_pred --------------------------------------CCcEEEeecCCceeEEE--ecCc-cceEEEeecCCCE----E
Confidence 25789999999876554 2221 2233467777775 5
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+..+ ....+..++... .......+..+...+....|+++|+.|+..+.+.
T Consensus 123 ~s~~---------------~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 172 (318)
T 4ggc_A 123 SSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 172 (318)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEe---------------cCCceEeeecCC---------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCc
Confidence 5443 222455555410 1122344555666788899999999888766553
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.|.+||+.+++.......... . ....+....|++++..++..........+..+
T Consensus 173 -----------~i~iwd~~~~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw 226 (318)
T 4ggc_A 173 -----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226 (318)
T ss_dssp -----------CEEEEESSCBTTBSCCSEEEC-----------C----CCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred -----------ceeEEECCCCcccccceeeec-----------c----cCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence 488889887654322111100 0 00123456688888777766554444456666
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+..++................++++++.+++.....+ ..|++.++.+
T Consensus 227 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d--~~i~iwd~~~ 273 (318)
T 4ggc_A 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPT 273 (318)
T ss_dssp ETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTT
T ss_pred ecccccccccccceeeeeeeeecccccceEEEEEcCC--CEEEEEECCC
Confidence 8877777666555555666788999998877654333 3466666543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-07 Score=95.75 Aligned_cols=84 Identities=10% Similarity=0.063 Sum_probs=52.5
Q ss_pred eeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
..++|||++|+....... .+.|. ....|+++|+.+++.. ..+... .....+.|+|||
T Consensus 272 ~~~s~d~~~lyV~~~~~~--~~~~~~~~~~V~VID~~t~~vv----------~~i~~g----------~~p~~i~~s~Dg 329 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQS--AWKLHAAAKEVTSVTGLVGQTS----------SQISLG----------HDVDAISVAQDG 329 (373)
T ss_pred EEECCCCCEEEEEeccCC--cccccCCCCeEEEEECCCCEEE----------EEEECC----------CCcCeEEECCCC
Confidence 578999998766544310 01111 2357999998876641 111110 024577899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+++++..+. +...|..+|++++++...
T Consensus 330 ~~~l~v~~~-~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSA-GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcC-CCCeEEEEECCCCCEEee
Confidence 966666543 335799999999987765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-07 Score=97.68 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=57.9
Q ss_pred eeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
.+++|||++++.....+.. .|.+. ....|+++|+.+++.. ..+... . ...++|+|||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v----------~~i~~~----------~-p~~ia~spdg 316 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRV----------ARIPGR----------D-ALSMTIDQQR 316 (361)
T ss_dssp EEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEE----------EEEECT----------T-CCEEEEETTT
T ss_pred EEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEE----------EEEecC----------C-eeEEEECCCC
Confidence 6899999987655431100 01111 1357999998876531 111110 1 3467899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCC--cEEEe-cCCCCCceeeEEeecCC
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSG--ELLRI-TPAESNFSWSLLTLDGD 445 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg--~~~~l-~~~~~~~~~~~~s~dg~ 445 (771)
++||.+ +. ..|..+|++++ ++... ...........++|+|+
T Consensus 317 ~~l~v~-n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 NLMLTL-DG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TEEEEE-CS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CEEEEe-CC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 977644 33 55777799999 55433 33333345667888886
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.6e-09 Score=115.58 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCcc-hHHHHHHH-HCCcEEEEECCC-CCCCCChhhh---h-cCCCCccccchhhHHHHHHH
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSY-SKSLAFLS-SVGYSLLIVNYR-GSLGFGEEAL---Q-SLPGKVGSQDVNDVLTAIDH 606 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~-~~~~~~la-~~G~~Vv~~d~r-G~~~~g~~~~---~-~~~~~~~~~~~~D~~~~i~~ 606 (771)
.++.|+||++|||++....... ......|+ ..|++|+.+||| |.-||..... . ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 4678999999999876544321 12234554 479999999999 3222221100 0 01111233348899999999
Q ss_pred HHHcC---CCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 607 VIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 607 l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
+.++. ..|+++|.|+|+|.||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 98862 36899999999999999998877652 36899999988854
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-09 Score=119.70 Aligned_cols=130 Identities=20% Similarity=0.228 Sum_probs=86.2
Q ss_pred cCCCceEEEEEEecCCCC---CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC-CcEEEEECCCCCC-CCChhhhhcCC
Q 004141 515 KGAQKPFEAIFVSSSHKK---DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSL-GFGEEALQSLP 589 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~---~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~-G~~Vv~~d~rG~~-~~g~~~~~~~~ 589 (771)
+.|.+.+ .+|.|.... ..++.|+||++|||++......... ...|+++ |++|+.+|||... ||..... .
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~-~~~la~~~~~vvv~~~YRl~~~Gfl~~~~---~ 181 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYD-GSVLASYGNVIVITVNYRLGVLGFLSTGD---Q 181 (574)
T ss_dssp CSCCCEE--EEEEEC--------CCEEEEEECCCSSSSSCCGGGSC-CHHHHHHHTCEEEEECCCCHHHHHCCCSS---S
T ss_pred CCcCCEE--EEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccC-chhhhccCCEEEEEeCCcCcccccCcCCC---C
Confidence 3455444 578887431 2356899999999987665432111 2345554 6999999999421 1111100 0
Q ss_pred CCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCc
Q 004141 590 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPL 650 (771)
Q Consensus 590 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~ 650 (771)
...+...+.|+.++++|+.++ ...|+++|.|+|+|.||.++..++.... .+|+++|+.++.
T Consensus 182 ~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 182 AAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 112234589999999999885 2469999999999999999998887543 568999988763
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.9e-08 Score=102.48 Aligned_cols=258 Identities=14% Similarity=0.057 Sum_probs=122.1
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcce--EEEecCCcccccccCCCcccceeecC--------CCCeEEEE
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLE--KEFHVPQTVHGSVYADGWFEGISWNS--------DETLIAYV 170 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~wSp--------Dg~~la~~ 170 (771)
...++|+++.||..+... ...+| ..+... .......+..+.| ..++|+| ||+.||..
T Consensus 94 ~~~~~~~~~~las~~~d~-----~v~lw~~~~~~~~~~~~~~~~~gH~~~v------~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDN-----TVRLIITKNETIITQHVLGGKSGHHNFV------NDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---CCEEEEEEEEEETTS-----CEEEEEEETTEEEEEEEECTTTSCSSCE------EEEEEEEEECTTCSEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCC-----cEEEEECCCCccceeeeecccCCCCCce------EEEEEccccccccCCCCCEEEEE
Confidence 345567777777665433 34444 222222 2222222333333 7899998 89988887
Q ss_pred ecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce-eeccCCCCCCccceEEEec
Q 004141 171 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAP 249 (771)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wsp 249 (771)
+.+ ..|.+||+.++.. ..+ ......+..++|+|
T Consensus 163 s~D--------------------------------------------~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 163 GDD--------------------------------------------CTLIIWRLTDEGPILAG--YPLSSPGISVQFRP 196 (393)
T ss_dssp ETT--------------------------------------------SEEEEEEEETTEEEEEE--EECSSCEEEEEEET
T ss_pred ECC--------------------------------------------CeEEEEECCCCceeeee--cCCCCCcEEEEECC
Confidence 543 5789999977654 333 34445677899999
Q ss_pred CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCC-------C---CcceecCCCCccc
Q 004141 250 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-------D---LPVVNLTESISSA 319 (771)
Q Consensus 250 Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-------~---~~~~~lt~~~~~~ 319 (771)
++.. ++.++. .+..|.++|+........... ...... . ........+...+
T Consensus 197 ~~~~----~l~~~~--------------~d~~v~~wd~~t~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 197 SNPN----QLIVGE--------------RNGNIRIFDWTLNLSAEENSQ-TELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp TEEE----EEEEEE--------------TTSEEEEEETTCCC-----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred CCCc----eEEecC--------------CCCEEEEEECCCCcccccccc-cCCcccceEEecccccceeeeecccccccc
Confidence 9875 555542 223566777621100000000 000000 0 0000111233345
Q ss_pred cceeec-CCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc-cCCCCCCccc
Q 004141 320 FFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY-SSSILSNPWL 397 (771)
Q Consensus 320 ~~p~~S-pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~-~~~~~~~~~s 397 (771)
....|+ |||+.|+-.+.+. .+.+||+.++............+..+.. .....+.- ........|+
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~-----------~i~vwd~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSG-----------AWLRWNLFANNDYNEISDSTMKLGPKNL--LPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp SEEEEETTTTCEEEEECTTS-----------EEEEEEC-------------------CC--SCSEEEECSSCCSSCCEEC
T ss_pred eeeeeecCCCCEEEEEeCCC-----------CEEEEECccCCCCceEeeecCccccEEE--ccccccccccCcceeEEEc
Confidence 667776 8999988766543 4778887765542211111000000000 00000000 0011233344
Q ss_pred c-CCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cCCCCCceeeEEeecCCEEEEEE
Q 004141 398 S-DGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 398 ~-Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
+ .++.++.+...++.. ..+|..+++.... ......+....|+|||+.|+...
T Consensus 325 ~~~~~~~~~sgs~Dg~V--~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLI--QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp SSCTTEEEEEETTTTEE--EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred cCCCCEEEEEECCCCEE--EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 3 444455555555554 4457777764433 33334566679999999887654
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-08 Score=106.14 Aligned_cols=210 Identities=11% Similarity=0.061 Sum_probs=113.0
Q ss_pred CCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHH-HHHHHHcCCCC
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLAN 614 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d 614 (771)
..|.|+++||.+.. ...|...+..| ..+|.|+.+|++| +|.+... . ..++++.+. ++.+.+.. .
T Consensus 100 ~~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g---~~~~~~~--~-----~~~~~~a~~~~~~i~~~~--~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPR---PNGPMQT--A-----ANLDEVCEAHLATLLEQQ--P 164 (329)
T ss_dssp SSCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCT---TTSHHHH--C-----SSHHHHHHHHHHHHHHHC--S
T ss_pred CCCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCC---CCCCCCC--C-----CCHHHHHHHHHHHHHHhC--C
Confidence 45789999997665 34566666666 5689999999998 4433211 1 124444433 33333331 2
Q ss_pred CCeEEEEEcChhHHHHHHHHhh---CCCceeEEEecCCccchhhhhcCC-----CCCcchhhhh-ccCCCCccCCCCCCh
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLCNLALMVGTT-----DIPDWCYVES-YGSKGKDSFTESPSV 685 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~p~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~ 685 (771)
..++.|+||||||.++..++.+ +|+.++.+++..+........... +......... ..............
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 243 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTST- 243 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTHHHHTC-----CCCCTHHHHHHHHHHHHHHTTCCCSCC-
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCCccccccccccccChhhHHHHHHHHHHHHHhccccccH-
Confidence 3589999999999999999998 899999999888765432111000 0000000000 00000000000011
Q ss_pred hhHHHH----hhc-C--cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc-CCCCCChHH
Q 004141 686 EDLTRF----HSK-S--PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG-IERPQSDFE 757 (771)
Q Consensus 686 ~~~~~~----~~~-s--p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~-~~~~~~~~~ 757 (771)
.....+ ... . .......+.+|++++.|+.|..++......+.+.. .+++++.++ ++|. +..+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~l~~~~~d~~~~~~~~~~w~~~~----~~~~~~~v~-g~H~~~~~~~~~~~ 318 (329)
T 3tej_A 244 ELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWI----AELDIYRQD-CAHVDIISPGTFEK 318 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEGGGCCTTCCHHHHHTTTE----EEEEEEEES-SCGGGGGSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcCCCeEEEEeccCCCCCCCchhhHHHhc----CCcEEEEec-CChHHhCCChHHHH
Confidence 111110 000 0 00113456789999999999887765443332222 358888897 5776 333333334
Q ss_pred HHHHHHHHH
Q 004141 758 SFLNIGLWF 766 (771)
Q Consensus 758 ~~~~i~~fl 766 (771)
+...+.+||
T Consensus 319 ia~~l~~~L 327 (329)
T 3tej_A 319 IGPIIRATL 327 (329)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444454454
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-09 Score=109.48 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=112.0
Q ss_pred EEEEEcC--CCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCCCC
Q 004141 539 LIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLANP 615 (771)
Q Consensus 539 ~vv~~HG--g~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~d~ 615 (771)
.|+++|| ++.. ...|...+..|. .+|.|+.+|++|. |.+... ........++++.+.+ +.+... ...
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~l~~~L~-~~~~v~~~d~~G~---g~~~~~--~~~~~~~~~~~~a~~~~~~i~~~--~~~ 160 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLRLSTSFQ-EERDFLAVPLPGY---GTGTGT--GTALLPADLDTALDAQARAILRA--AGD 160 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHHHHHTTT-TTCCEEEECCTTC---CBC-----CBCCEESSHHHHHHHHHHHHHHH--HTT
T ss_pred cEEEeCCCCCCCc--HHHHHHHHHhcC-CCCceEEecCCCC---CCCccc--ccCCCCCCHHHHHHHHHHHHHHh--cCC
Confidence 7999997 3332 346777777775 7899999999994 432000 0001112233333322 222222 123
Q ss_pred CeEEEEEcChhHHHHHHHHhhC----CCceeEEEecCCccchhhhhcCCCCCcch--hhhhccCCCCccCCCCCChhhH-
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSVEDL- 688 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 688 (771)
.++.|+|||+||.+|..+|.+. ++.++++++.++........ ...+. +....... .+.. ......
T Consensus 161 ~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~----~~~~~~~l~~~~~~~---~~~~-~~~~~~~ 232 (319)
T 2hfk_A 161 APVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWSRQLGEGLFAG---ELEP-MSDARLL 232 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHH----HHHTHHHHHHHHHHT---CSSC-CCHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhH----HHHHHHHhhHHHHHh---hccc-cchHHHH
Confidence 6799999999999999999876 45688888877643210000 00000 00000000 0000 011111
Q ss_pred --HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004141 689 --TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 689 --~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 765 (771)
..+...........+++|+++++| .|..+++.. ...+.+. ...+++++.++ ++|.....+....+...+.+|
T Consensus 233 ~~~~~~~~~~~~~~~~i~~Pvl~i~g-~D~~~~~~~~~~~~~~~---~~~~~~~~~v~-g~H~~~~~e~~~~~~~~i~~~ 307 (319)
T 2hfk_A 233 AMGRYARFLAGPRPGRSSAPVLLVRA-SEPLGDWQEERGDWRAH---WDLPHTVADVP-GDHFTMMRDHAPAVAEAVLSW 307 (319)
T ss_dssp HHHHHHHHHHSCCCCCCCSCEEEEEE-SSCSSCCCGGGCCCSCC---CSSCSEEEEES-SCTTHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCCCEEEEEc-CCCCCCccccccchhhc---CCCCCEEEEeC-CCcHHHHHHhHHHHHHHHHHH
Confidence 111110001124678899999999 999888764 2222111 12246888898 589743322556788888899
Q ss_pred HHHh
Q 004141 766 FKKY 769 (771)
Q Consensus 766 l~~~ 769 (771)
|++.
T Consensus 308 L~~~ 311 (319)
T 2hfk_A 308 LDAI 311 (319)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-08 Score=107.02 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCCCCCCcc--hHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcC-----CCCcc----ccchhhHHHH
Q 004141 536 CDPLIVVLHGGPHSVSLSSY--SKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSL-----PGKVG----SQDVNDVLTA 603 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~--~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~-----~~~~~----~~~~~D~~~~ 603 (771)
..| ||++|||.+.... .+ ......+ .+.|+.|+++|+|| ||.+..... ..+.+ .+.++|+...
T Consensus 38 g~P-i~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg---~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~~ 112 (446)
T 3n2z_B 38 GGS-ILFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRY---YGESLPFGDNSFKDSRHLNFLTSEQALADFAEL 112 (446)
T ss_dssp TCE-EEEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTT---STTCCTTGGGGGSCTTTSTTCSHHHHHHHHHHH
T ss_pred CCC-EEEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCC---CCCCCCCCccccccchhhccCCHHHHHHHHHHH
Confidence 346 6777888764321 11 1123333 34589999999999 555532110 11111 2346788888
Q ss_pred HHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCC
Q 004141 604 IDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649 (771)
Q Consensus 604 i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p 649 (771)
++++.... .....++.++||||||.+|++++.++|+++.++|+.++
T Consensus 113 ~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 113 IKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 88887652 22345899999999999999999999999999988664
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=101.44 Aligned_cols=90 Identities=6% Similarity=0.024 Sum_probs=49.9
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCC--------CCCeEEEEecCCCCCCeEEEEec---CC
Q 004141 65 LLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP--------SGSKLLVVRNPENESPIQFELWS---QS 133 (771)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP--------dG~~la~~~~~~~~~~~~~~~~~---~~ 133 (771)
++.....+.+.+|++..... ..+.....+....+.+...+||| ||+.||-.+.+. ...+|+ ++
T Consensus 104 las~~~d~~v~lw~~~~~~~-~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~-----tv~~Wd~~~~~ 177 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETI-ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC-----TLIIWRLTDEG 177 (393)
T ss_dssp EEEEETTSCEEEEEEETTEE-EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS-----EEEEEEEETTE
T ss_pred EEEEeCCCcEEEEECCCCcc-ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC-----eEEEEECCCCc
Confidence 33334445666666643321 11111123333446788999998 999999877654 566663 22
Q ss_pred cceEEEecCCcccccccCCCcccceeecCCCCeEEEE
Q 004141 134 QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 170 (771)
Q Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~ 170 (771)
....+......+ .+++|+|++..++.+
T Consensus 178 ~~~~~~~~~~~v----------~~v~~~p~~~~~l~~ 204 (393)
T 4gq1_A 178 PILAGYPLSSPG----------ISVQFRPSNPNQLIV 204 (393)
T ss_dssp EEEEEEECSSCE----------EEEEEETTEEEEEEE
T ss_pred eeeeecCCCCCc----------EEEEECCCCCceEEe
Confidence 222333333332 589999998754443
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-06 Score=90.32 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=61.8
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccc-cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....++||+++|+...+... .|.|.. ..+|+++|+.+++...- +... ....++.+|+
T Consensus 283 q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~----------i~vg----------~~~~~lavs~ 340 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAK----------FEMG----------HEIDSINVSQ 340 (386)
T ss_dssp SCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEE----------EEEE----------EEECEEEECS
T ss_pred ceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEE----------EECC----------CCcceEEECC
Confidence 34677999999877654321 133332 46899999998775221 1000 0134678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeec
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 443 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~d 443 (771)
|++.++|.++ .....+..+|..++++..-....+......+++|
T Consensus 341 D~~~~ly~tn-~~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 341 DEKPLLYALS-TGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSSCEEEEEE-TTTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCeEEEEEc-CCCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 9985555554 3345688899999987765544443344555554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.8e-08 Score=105.65 Aligned_cols=164 Identities=9% Similarity=-0.042 Sum_probs=98.3
Q ss_pred ceEEEEEccCCcee------------eccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 218 PSLFVININSGEVQ------------AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 218 ~~l~v~d~~~~~~~------------~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
..|.+||+.+++.. .+ ......+..++|+|++ . |+..+ .+..|.++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~----lasgs---------------~DgtV~lW 292 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-T----VVCGF---------------KNGFVAEF 292 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-E----EEEEE---------------TTSEEEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-e----EEEEe---------------CCCEEEEE
Confidence 46777887665321 22 2234467789999864 4 66554 33478888
Q ss_pred ecccccchhhhhhhhcCCCCCCc--ceecCCCCccccce--eecCCC-CEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFP--RFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~--~~~lt~~~~~~~~p--~~SpDG-~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+ .++. ...+..+...+.+. .|+||| +.|+..+.+. .|.+||+.+++
T Consensus 293 D~-----------------~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-----------tvklWD~~~~~ 344 (524)
T 2j04_B 293 DL-----------------TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-----------YFYIFNPKDIA 344 (524)
T ss_dssp ET-----------------TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-----------EEEEECGGGHH
T ss_pred EC-----------------CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-----------eEEEEECCCCC
Confidence 88 4332 23455666678887 689998 7777666553 58888887644
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeeE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSL 439 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~ 439 (771)
......+. .. ...+..++|+||++.++ ++..++. +..+|+.++.. ..+......+....
T Consensus 345 ~~~~~~~~--------------~~---~~~v~~v~fsp~~~~l~-s~~~d~t--v~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 345 TTKTTVSR--------------FR---GSNLVPVVYCPQIYSYI-YSDGASS--LRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp HHCEEEEE--------------CS---CCSCCCEEEETTTTEEE-EECSSSE--EEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred cccccccc--------------cc---cCcccceEeCCCcCeEE-EeCCCCc--EEEEECcccccceeeecCCCceEEEE
Confidence 31110000 00 01245688999998654 4444444 44457777664 44555555566678
Q ss_pred EeecCCEEEEEE
Q 004141 440 LTLDGDNIIAVS 451 (771)
Q Consensus 440 ~s~dg~~l~~~~ 451 (771)
|+|+|+.|+..+
T Consensus 405 ~Sp~g~~l~Sgs 416 (524)
T 2j04_B 405 VSRLHPMVLAGS 416 (524)
T ss_dssp CCSSCCBCEEEE
T ss_pred eCCCCCeEEEEE
Confidence 899888665433
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.75 E-value=3.9e-07 Score=95.95 Aligned_cols=188 Identities=14% Similarity=0.136 Sum_probs=107.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.+....++++++.++++...+ ..+.+|+ .++..........+ ..+.|++++. +...+. .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v----------~~v~~~~~~~--~~~~~~-~-- 120 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPV----------KDLFLSREFI--VVSYGD-V-- 120 (355)
T ss_dssp CCCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCE----------EEEEECSSEE--EEEETT-E--
T ss_pred CeEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCce----------EEEEEcCCEE--EEEEcC-E--
Confidence 366788999999998775433 2566773 33333333332222 5788888753 322221 1
Q ss_pred CCCccCCCC-CCCCCCccCCCCCCcccccCCcCcccC--CccCceEEEEEccCCc-----------------eeeccCCC
Q 004141 178 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYA--GKRQPSLFVININSGE-----------------VQAVKGIP 237 (771)
Q Consensus 178 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~--~~~~~~l~v~d~~~~~-----------------~~~l~~~~ 237 (771)
...|+.... ........ ..+...+.+ ..... +.....|.+||+.+++ ...+ ..
T Consensus 121 i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ 193 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KA 193 (355)
T ss_dssp EEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CC
T ss_pred EEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--Ec
Confidence 112221111 00000000 001111221 11111 3456789999998875 4555 34
Q ss_pred CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce-eEEEecccccchhhhhhhhcCCCCCCc-ceecC-C
Q 004141 238 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLP-VVNLT-E 314 (771)
Q Consensus 238 ~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt-~ 314 (771)
....+..++|||||+. |+..+ .+.. |.++|+ .+++ ...+. .
T Consensus 194 h~~~v~~~~~s~~g~~----l~s~s---------------~d~~~v~iwd~-----------------~~~~~~~~~~~g 237 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDM----VATCS---------------QDGTIIRVFKT-----------------EDGVLVREFRRG 237 (355)
T ss_dssp CSSCEEEEEECTTSSE----EEEEE---------------TTCSEEEEEET-----------------TTCCEEEEEECT
T ss_pred cCCceEEEEECCCCCE----EEEEe---------------CCCCEEEEEEC-----------------CCCcEEEEEEcC
Confidence 5557889999999997 77665 2335 888887 5554 34454 2
Q ss_pred -CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 315 -SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 315 -~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+...+.+.+|||||+.|+..+.+. .|.+||+..+.
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~-----------~v~iw~~~~~~ 273 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKW-----------TLHVFEIFNDQ 273 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTC-----------EEEEEESSCCS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCC-----------EEEEEEccCCC
Confidence 566789999999999998877653 48888886654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.6e-07 Score=99.12 Aligned_cols=205 Identities=10% Similarity=0.070 Sum_probs=118.4
Q ss_pred ccceEEEeCC-CCCeEEEEecCCCCCCeEEEEec--C---Cc-c--eEEEecCCcccccccCCCcccceeecCCCCeEEE
Q 004141 99 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--Q---SQ-L--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~~--~---~~-~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~ 169 (771)
+.+...+||| ||++||..+..+ .+.+|+ . +. . ......... +.+++|+||++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCSST----------VTQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECSSC----------EEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCCCC----------EEEEEEeCCCCEEEE
Confidence 4588999999 999998876543 555662 2 21 1 111121222 269999999999888
Q ss_pred EecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc---CCceeecc---------CCC
Q 004141 170 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ---SGEVQAVK---------GIP 237 (771)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~---~~~~~~l~---------~~~ 237 (771)
.+.+ ..|.+||+. .++..... ..+
T Consensus 129 ~s~d--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 129 SSKD--------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EeCC--------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 6543 467778773 44332220 001
Q ss_pred --CCCccceEE--EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceec
Q 004141 238 --KSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 312 (771)
Q Consensus 238 --~~~~~~~~~--wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~l 312 (771)
....+..+. |+||++. |+..+ .+..|.++|+ .+++ ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~ 208 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSL----LVALT---------------NLSRVIIFDI-----------------RTLERLQII 208 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEE----EEEEE---------------TTSEEEEEET-----------------TTCCEEEEE
T ss_pred cccccCceEEEEEEcCCCCE----EEEEe---------------CCCeEEEEeC-----------------CCCeeeEEE
Confidence 111222222 5677775 55554 3347899998 5554 3444
Q ss_pred CC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC-c-cceeeEEecccccCCCCCccccc
Q 004141 313 TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L-EKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 313 t~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
.. +...+....|+|||+.|+..+.+. .|.+||+.++..... . .....+..+
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~v~~~-------------- 263 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRG-----------IIDIWDIRFNVLIRSWSFGDHAPITHV-------------- 263 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEEEBCTTCEEEEEE--------------
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCC-----------eEEEEEcCCccEEEEEecCCCCceEEE--------------
Confidence 44 456788999999999988777653 488999887553211 0 111011100
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 389 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
...+.|++|++.| ++...++ .|..+|+.+++....
T Consensus 264 --~~~~~~s~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 264 --EVCQFYGKNSVIV-VGGSSKT--FLTIWNFVKGHCQYA 298 (437)
T ss_dssp --EECTTTCTTEEEE-EEESTTE--EEEEEETTTTEEEEE
T ss_pred --EeccccCCCccEE-EEEcCCC--cEEEEEcCCCcEEEE
Confidence 0133677888644 4444343 566668887775443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.5e-07 Score=90.22 Aligned_cols=252 Identities=9% Similarity=-0.044 Sum_probs=135.0
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|.+++||+.|.++... .+.|+.++. .++ ...+.... ......+++|||+.++.. . +...+
T Consensus 33 ~~~d~~g~~l~~~~~~--------~~~i~~~~~--~~~-~~~~~~~~-----~~~~~l~~~~dg~l~v~~-~---~~~~i 92 (296)
T 3e5z_A 33 PVYVPARSAVIFSDVR--------QNRTWAWSD--DGQ-LSPEMHPS-----HHQNGHCLNKQGHLIACS-H---GLRRL 92 (296)
T ss_dssp EEEEGGGTEEEEEEGG--------GTEEEEEET--TSC-EEEEESSC-----SSEEEEEECTTCCEEEEE-T---TTTEE
T ss_pred CeEeCCCCEEEEEeCC--------CCEEEEEEC--CCC-eEEEECCC-----CCcceeeECCCCcEEEEe-c---CCCeE
Confidence 3345677766665422 246777664 222 33332221 346778999999854332 2 22356
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC-CCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+.++ ..++.+.+........ ......+.++|||+ |++.... .... .+.
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~vtd~~~g~~~--~~~---------------------- 142 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKK-----LNSPNDVCLAPDGS-LWFSDPTYGIDK--PEE---------------------- 142 (296)
T ss_dssp EEECSTTCCEEEEECEETTEE-----CCCCCCEEECTTSC-EEEEECSHHHHC--GGG----------------------
T ss_pred EEEcCCCCcEEEEeeccCCCC-----CCCCCCEEECCCCC-EEEECCcccccc--ccc----------------------
Confidence 6666 3666554443211110 00124789999997 4442100 0000 000
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
+...........||.++.+ ++.+.+ .........++|+|||+. | ++.. ....|++
T Consensus 143 ---~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~----l-v~~~--------------~~~~i~~ 197 (296)
T 3e5z_A 143 ---GYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNL----L-VSDT--------------GDNATHR 197 (296)
T ss_dssp ---SSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCE----E-EEET--------------TTTEEEE
T ss_pred ---cccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCE----E-EEeC--------------CCCeEEE
Confidence 0000001123589999987 666666 333345678999999996 6 4431 2337888
Q ss_pred EecccccchhhhhhhhcCCCCCCcc----eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~----~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
+++. ..+.. +.+..........++++||+ |+... . ..|+++|.++..
T Consensus 198 ~~~~----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~-----------~~v~~~~~~g~~ 248 (296)
T 3e5z_A 198 YCLN----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-G-----------DGVHVLTPDGDE 248 (296)
T ss_dssp EEEC----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-T-----------TEEEEECTTSCE
T ss_pred EEEC----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-C-----------CeEEEECCCCCE
Confidence 8872 13333 22222233456789999998 44333 2 248888875321
Q ss_pred CCCCccceeeEEecccccCCCCCcccccCCCCCCcc-ccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 361 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW-LSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~-s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
...+ ..+. .+..++| ++|++.|++++. ..||++++++++++.
T Consensus 249 ~~~~-----------~~~~----------~~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 249 LGRV-----------LTPQ----------TTSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp EEEE-----------ECSS----------CCCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred EEEE-----------ECCC----------CceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 1111 0000 1345678 689998887764 379999998887653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-06 Score=90.31 Aligned_cols=200 Identities=11% Similarity=-0.013 Sum_probs=99.5
Q ss_pred cCceEEEEEccCCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcc--eeeeeeeec---cCCceeEEEe
Q 004141 216 RQPSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSET--RKLGIKYCY---NRPCALYAVR 286 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~--~~~g~~~~~---~~~~~l~~~d 286 (771)
....|.++|.++.+++.- .+.. ...-++.|+||++ +++++++..+ ++.|+.... ....+|..+|
T Consensus 162 ~~g~v~vlD~~T~~v~~~--~~~~~~~~~~~Yd~~~~p~~~-----~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGK--WEIDRGDQYLAYDFWWNLPNE-----VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp SCCEEEEECTTTCCEEEE--CCSBCTTCCCCCCEEEETTTT-----EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred CCCeEEEEECCCCeEEEE--EccCCCCccccceEEECCCCC-----EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 457899999999887655 2211 1233588999999 4555543321 111211100 2345899999
Q ss_pred cccccchhhhhhhhcCCCCCCcc-eecCCC-C-ccccce--eecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 287 VSLYKSEASELELKESSSEDLPV-VNLTES-I-SSAFFP--RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~-~-~~~~~p--~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+ .+++. ..+.-+ . ...... .|+|||++++....-.. ..-.++|+++..+.+..
T Consensus 235 ~-----------------~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~-----~~Lss~V~v~~~d~g~~ 292 (462)
T 2ece_A 235 L-----------------RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL-----KDLSSSIWLWFYEDGKW 292 (462)
T ss_dssp T-----------------TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET-----TTCCEEEEEEEEETTEE
T ss_pred C-----------------CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec-----cCCCceEEEEEecCCce
Confidence 8 44432 233322 1 123333 45999997554443000 00124566655544321
Q ss_pred CCCccceeeEEecccccCCCCCcccc------cCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC-CCcEE---EecCC
Q 004141 362 FSSLEKIVDVIPVVQCAEGDCFPGLY------SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SGELL---RITPA 431 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~------~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~-tg~~~---~l~~~ 431 (771)
.. ..++++-...-.+..|.+. ......+.+|+||++||++....+. |..+++. .++.+ .+...
T Consensus 293 ~~-----~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~--VavfdV~d~~~~~lv~~I~tG 365 (462)
T 2ece_A 293 NA-----EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE--VRQYDISNPFKPVLTGKVKLG 365 (462)
T ss_dssp EE-----EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE--EEEEECSSTTSCEEEEEEECB
T ss_pred eE-----EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE--EEEEEecCCCCcEEEEEEEeC
Confidence 10 1111111100001111000 1134577899999998877654444 4444542 33333 22222
Q ss_pred C--------------CCceeeEEeecCCEEEEEE
Q 004141 432 E--------------SNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 432 ~--------------~~~~~~~~s~dg~~l~~~~ 451 (771)
. +......+|+||++|+++.
T Consensus 366 G~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 366 GIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 0134568899999988776
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-06 Score=93.28 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=51.6
Q ss_pred eeecCCCCEEEEEecCCCCCCCCcc-ccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
..++|||++|+...... ..|.|. ....|.++|+.+.+... .+.... ....+.|+|||
T Consensus 324 va~s~dg~rlyVa~~~~--~~gthk~~s~~VsVID~~T~kvv~----------~I~vg~----------~P~gia~spDg 381 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQR--DEWKHKAASRFVVVLNAETGERIN----------KIELGH----------EIDSINVSQDA 381 (426)
T ss_dssp EEEEGGGTEEEEEEEEC--CTTCTTSCEEEEEEEETTTCCEEE----------EEEEEE----------EECEEEECCSS
T ss_pred eEEcCCCCEEEEEeccc--ccccccCCCCEEEEEECCCCeEEE----------EEECCC----------CcCeEEEccCC
Confidence 58999999876654321 012221 23579999998876421 111100 13467899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+.++|..++ ....|..||+.++++..-
T Consensus 382 ~~~lyv~n~-~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 382 EPLLYALSA-GTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SCEEEEEET-TTTEEEEEETTTCCEEEE
T ss_pred CEEEEEEcC-CCCeEEEEECCCCCEEEE
Confidence 944455543 245688899999987744
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-07 Score=100.30 Aligned_cols=240 Identities=9% Similarity=-0.012 Sum_probs=141.6
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 103 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.+.|+.|...++|+.+.. ...+.+++ ..++....+......| ++.+||||++|+... .
T Consensus 158 ~~~~~~d~~~~~~V~~~~--~~~V~viD~~t~~v~~~i~~g~~p~----------~v~~SpDGr~lyv~~-~-------- 216 (567)
T 1qks_A 158 QQMNDWDLENLFSVTLRD--AGQIALIDGSTYEIKTVLDTGYAVH----------ISRLSASGRYLFVIG-R-------- 216 (567)
T ss_dssp SCCSCCCGGGEEEEEETT--TTEEEEEETTTCCEEEEEECSSCEE----------EEEECTTSCEEEEEE-T--------
T ss_pred ccccccCCCceEEEEeCC--CCeEEEEECCCCeEEEEEeCCCCcc----------ceEECCCCCEEEEEc-C--------
Confidence 466788877777887753 44677777 5555555555544443 889999999876542 1
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--CCceeeccCCCCCCccceEEEe----cCCCCCc
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWA----PLNEGLH 255 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l~~~~~~~~~~~~~ws----pDg~~~~ 255 (771)
...|.++|+. ++++..- ++.......+++| |||++
T Consensus 217 -----------------------------------dg~V~viD~~~~t~~~v~~--i~~G~~P~~ia~s~~~~pDGk~-- 257 (567)
T 1qks_A 217 -----------------------------------DGKVNMIDLWMKEPTTVAE--IKIGSEARSIETSKMEGWEDKY-- 257 (567)
T ss_dssp -----------------------------------TSEEEEEETTSSSCCEEEE--EECCSEEEEEEECCSTTCTTTE--
T ss_pred -----------------------------------CCeEEEEECCCCCCcEeEE--EecCCCCceeEEccccCCCCCE--
Confidence 2479999995 5554332 2333456788999 79996
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-cCCC-----------Ccccccee
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTES-----------ISSAFFPR 323 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-lt~~-----------~~~~~~p~ 323 (771)
++... .. ...+.++|. .+.+... +... ...+....
T Consensus 258 --l~v~n-~~-------------~~~v~ViD~-----------------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 258 --AIAGA-YW-------------PPQYVIMDG-----------------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp --EEEEE-EE-------------TTEEEEEET-----------------TTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred --EEEEE-cc-------------CCeEEEEEC-----------------CCCcEEEEEeccccccccccccCCCceEEEE
Confidence 55544 21 236778886 4444322 2111 11244567
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEE
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 403 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l 403 (771)
.|+++..+++...+ ..+|+++|..+.+...+ .. +. .+.| +....|+|||+++
T Consensus 305 ~s~~~~~~vv~~~~----------~g~v~~vd~~~~~~~~v-------~~-i~---~~~~-------~~d~~~~pdgr~~ 356 (567)
T 1qks_A 305 ASHYRPEFIVNVKE----------TGKILLVDYTDLNNLKT-------TE-IS---AERF-------LHDGGLDGSHRYF 356 (567)
T ss_dssp ECSSSSEEEEEETT----------TTEEEEEETTCSSEEEE-------EE-EE---CCSS-------EEEEEECTTSCEE
T ss_pred EcCCCCEEEEEecC----------CCeEEEEecCCCcccee-------ee-ee---cccc-------ccCceECCCCCEE
Confidence 78998876655533 25799999765432111 11 00 1122 1245799999988
Q ss_pred EEEeeeCCeeEEEEEECCCCcEEEecCC-CC-Cc--eee-EEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 404 LLSSIWGSSQVIISVNVSSGELLRITPA-ES-NF--SWS-LLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 404 ~~~~~~~~~~~l~~~d~~tg~~~~l~~~-~~-~~--~~~-~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
+.+... ...|..+|.+++++...... .. .. ... .+.++++.++++..-. ...+.+++..+
T Consensus 357 ~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~ 421 (567)
T 1qks_A 357 ITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDP 421 (567)
T ss_dssp EEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCC
Confidence 776543 34577799999987755433 11 11 122 2467777776655422 23477776544
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.73 E-value=7.5e-09 Score=110.93 Aligned_cols=112 Identities=12% Similarity=0.058 Sum_probs=76.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||...+. ...|.. .+..| +..+|.|+++|++|. |.+...... .......+++.+.++++.++..
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~---g~s~y~~~~-~~~~~v~~~la~ll~~L~~~~g 141 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSG---SRTAYSQAS-QNVRIVGAEVAYLVGVLQSSFD 141 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHH---HSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcc---cCCccHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 4568999999966542 234654 44554 567999999999983 322110000 0000113456667777764433
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++.++|++++++++..|..
T Consensus 142 ~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 142 YSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 567899999999999999999999999999999887754
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-09 Score=110.44 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc---EEEEECCCCCCCCChhh-------------hh------------
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEA-------------LQ------------ 586 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~---~Vv~~d~rG~~~~g~~~-------------~~------------ 586 (771)
...|.||++||.+.+ ...|...+..|+++|| .|+++|++| +|.+. ..
T Consensus 20 ~~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG---~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~ 94 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDT---ISWALVVETDMLFSGLGSEFGLNISQIIDPET 94 (484)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCH---HHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCC---CCcccccccccccccccccccccccccccccc
Confidence 345779999997665 4578888999999999 799999998 44320 00
Q ss_pred ---cCCC---CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccc
Q 004141 587 ---SLPG---KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 652 (771)
Q Consensus 587 ---~~~~---~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~ 652 (771)
.... .......+++.+.++.++++. +.+++.|+||||||.+++.++.++| +.++++|+.+|..+
T Consensus 95 l~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 95 LDKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0000 001123567777777777653 3478999999999999999999987 48999999988653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=109.56 Aligned_cols=202 Identities=12% Similarity=0.053 Sum_probs=126.5
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+++|||||+.||..+. +..|++|+..+++....
T Consensus 21 ~~lafspdg~~lAsgs~--------------------------------------------Dg~I~lw~~~~~~~~~~-- 54 (902)
T 2oaj_A 21 IAAAFDFTQNLLAIATV--------------------------------------------TGEVHIYGQQQVEVVIK-- 54 (902)
T ss_dssp EEEEEETTTTEEEEEET--------------------------------------------TSEEEEECSTTCEEEEE--
T ss_pred EEEEECCCCCEEEEEeC--------------------------------------------CCEEEEEeCCCcEEEEE--
Confidence 69999999999988643 25788999887776555
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE 314 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~ 314 (771)
......+..++|+| |+. |+..+ .+..|.++|+ .+++. ..+.
T Consensus 55 ~~~~~~V~~l~fsp-g~~----L~S~s---------------~D~~v~lWd~-----------------~~~~~~~~~~- 96 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIY----LVVIN---------------AKDTVYVLSL-----------------YSQKVLTTVF- 96 (902)
T ss_dssp CSSCCCEEEEEEET-TTE----EEEEE---------------TTCEEEEEET-----------------TTCSEEEEEE-
T ss_pred cCCCCCEEEEEEcC-CCE----EEEEE---------------CcCeEEEEEC-----------------CCCcEEEEEc-
Confidence 44555788999999 776 77665 2347888898 55543 3333
Q ss_pred CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCC
Q 004141 315 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 394 (771)
Q Consensus 315 ~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~ 394 (771)
....+....|+|||++|+..+.+. .|.+||+.++..... .++.+.... ..+. .+...+..+
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg-----------~V~lwd~~~~~~~~~------~i~~~~~~~-~~~~-~h~~~V~sl 157 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNG-----------SMIVYDIDRDQLSSF------KLDNLQKSS-FFPA-ARLSPIVSI 157 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTS-----------CEEEEETTTTEEEEE------EECCHHHHH-TCSS-SCCCCCCEE
T ss_pred CCCCEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCccccc------eeccccccc-cccc-cCCCCeEEE
Confidence 445688999999999988776543 488999887553100 000000000 0000 011246688
Q ss_pred ccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------------CCceeeEEeecCCEEEEEEeCCC
Q 004141 395 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------------SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 395 ~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------------~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
+|+|++..++++...++. + .+|+.+++..+..... ..+....|+|+|+.|+....+.
T Consensus 158 ~~sp~~~~~l~~g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg- 233 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN- 233 (902)
T ss_dssp EEETTEEEEEEEECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC-
T ss_pred EEccCCCCEEEEEeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC-
Confidence 999976555566555554 4 5588888755433221 2355678999998776655432
Q ss_pred CCCeEEEEEecc
Q 004141 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
.+.+.++.+
T Consensus 234 ---~i~lWd~~~ 242 (902)
T 2oaj_A 234 ---SLVFWDANS 242 (902)
T ss_dssp ---CEEEEETTT
T ss_pred ---eEEEEECCC
Confidence 355555443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.2e-06 Score=89.10 Aligned_cols=236 Identities=7% Similarity=-0.025 Sum_probs=126.3
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCccccccc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVY 150 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 150 (771)
..|+.++. .+++.+++.... .......+++|||+.++...........++.++ .++....+.... ..
T Consensus 66 ~~i~~~d~--~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~----- 133 (333)
T 2dg1_A 66 GNIFKINP--ETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL-ST----- 133 (333)
T ss_dssp CEEEEECT--TTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS-SS-----
T ss_pred CEEEEEeC--CCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC-cc-----
Confidence 46777654 333444433211 134678899999975544322211224677777 444444333211 10
Q ss_pred CCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce
Q 004141 151 ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV 230 (771)
Q Consensus 151 ~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~ 230 (771)
......+.++|||+ |++....... ......||++|.++++.
T Consensus 134 -~~~~~~i~~d~~g~-l~v~~~~~~~-------------------------------------~~~~~~l~~~~~~~~~~ 174 (333)
T 2dg1_A 134 -AYCIDDMVFDSKGG-FYFTDFRGYS-------------------------------------TNPLGGVYYVSPDFRTV 174 (333)
T ss_dssp -CCCEEEEEECTTSC-EEEEECCCBT-------------------------------------TBCCEEEEEECTTSCCE
T ss_pred -CCcccceEECCCCC-EEEEeccccc-------------------------------------cCCCceEEEEeCCCCEE
Confidence 11235789999996 4443221100 01236799999888877
Q ss_pred eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-c
Q 004141 231 QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-V 309 (771)
Q Consensus 231 ~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~ 309 (771)
+.+ .........++|+|||+. |++... ....|+++++. ..+. .
T Consensus 175 ~~~--~~~~~~~~~i~~~~dg~~----l~v~~~--------------~~~~i~~~d~~----------------~~g~~~ 218 (333)
T 2dg1_A 175 TPI--IQNISVANGIALSTDEKV----LWVTET--------------TANRLHRIALE----------------DDGVTI 218 (333)
T ss_dssp EEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEEEEEC----------------TTSSSE
T ss_pred EEe--ecCCCcccceEECCCCCE----EEEEeC--------------CCCeEEEEEec----------------CCCcCc
Confidence 766 222234567899999997 766541 12368888872 1122 1
Q ss_pred eec-----C--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC--
Q 004141 310 VNL-----T--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG-- 380 (771)
Q Consensus 310 ~~l-----t--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-- 380 (771)
..+ . ..........+++||+ |+..... ...|+++|.++..... +..+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~----------~~~v~~~d~~g~~~~~-----------~~~~~~~~ 276 (333)
T 2dg1_A 219 QPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYG----------QGRVLVFNKRGYPIGQ-----------ILIPGRDE 276 (333)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEET----------TTEEEEECTTSCEEEE-----------EECTTGGG
T ss_pred ccccceEEEecCCCCCCCceEECCCCC-EEEEEcC----------CCEEEEECCCCCEEEE-----------EEcCCCcc
Confidence 111 0 1113456688999998 3333222 1358888864321111 100000
Q ss_pred CCCcccccCCCCCCccccCCCEEEEEeeeC---CeeEEEEEECC
Q 004141 381 DCFPGLYSSSILSNPWLSDGCTMLLSSIWG---SSQVIISVNVS 421 (771)
Q Consensus 381 ~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~---~~~~l~~~d~~ 421 (771)
+.+ ..+..++|++|++.|++++..+ ....||++++.
T Consensus 277 g~~-----~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 277 GHM-----LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TCS-----CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ccc-----cCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 000 0245678999998888877643 34578888864
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-06 Score=82.61 Aligned_cols=204 Identities=10% Similarity=0.122 Sum_probs=123.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
....++|+|++++|+++.. ....++.+. +++....+.... ... .+++++|++..|++...
T Consensus 37 ~~~gi~~d~~~~~ly~~d~---~~~~I~~~~~~g~~~~~~~~~~~~~p----------~~ia~d~~~~~lyv~d~----- 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS----- 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET-----
T ss_pred cEEEEEEecCCCEEEEEEC---CCCEEEEEecCCCCcEEEEECCCCCc----------cEEEEEecCCeEEEEEC-----
Confidence 3567899999998866543 234677777 444333333221 122 48899999887776522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
....|+++++++...+.+ .... .....++++|++..
T Consensus 99 --------------------------------------~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~--- 135 (267)
T 1npe_A 99 --------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN--- 135 (267)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE---
T ss_pred --------------------------------------CCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCE---
Confidence 235788999887665555 2222 35678899998876
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+++.+.. ....|+++++ ++...+.+. .........+++|||++|++..
T Consensus 136 -lyv~~~~~------------~~~~I~~~~~-----------------dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 136 -LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp -EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCC------------CCcEEEEEec-----------------CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 76654210 1247888887 444333332 2333467789999999998877
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
... ..|+++|.++..... +.. ....| . ....|+..||++.. +...|
T Consensus 186 ~~~----------~~I~~~~~~g~~~~~-------~~~------~~~~P-------~--gi~~d~~~lyva~~--~~~~v 231 (267)
T 1npe_A 186 AGT----------HRAECLNPAQPGRRK-------VLE------GLQYP-------F--AVTSYGKNLYYTDW--KTNSV 231 (267)
T ss_dssp TTT----------TEEEEEETTEEEEEE-------EEE------CCCSE-------E--EEEEETTEEEEEET--TTTEE
T ss_pred CCC----------CEEEEEecCCCceEE-------Eec------CCCCc-------e--EEEEeCCEEEEEEC--CCCeE
Confidence 542 469999986532211 110 01111 1 22456777877543 33468
Q ss_pred EEEECCCCcEEEe
Q 004141 416 ISVNVSSGELLRI 428 (771)
Q Consensus 416 ~~~d~~tg~~~~l 428 (771)
+++|.++|+....
T Consensus 232 ~~~d~~~g~~~~~ 244 (267)
T 1npe_A 232 IAMDLAISKEMDT 244 (267)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCCceEE
Confidence 9999988875543
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.4e-09 Score=110.22 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=74.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchH-HHHHHHH-CCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~-~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
...|+||++||...+. ...|.. ....|.+ .+|.|+++|++|. |.+...... .......+++.+.+++|.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~---g~s~y~~~~-~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKG---SQTSYTQAA-NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHH---HSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccc---cCCcchHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 4569999999976543 224554 3445544 5899999999983 221100000 0001123566666777754333
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+||||||.+|..++.++|+ ++.+++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 567899999999999999999999999 99999887754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-06 Score=90.03 Aligned_cols=257 Identities=13% Similarity=0.033 Sum_probs=135.6
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 103 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 103 ~~~~SPdG~~la~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+.+||||+++++.... +.....+..++ ..++..+.+.++.... .-....-.++.+||||++|+......
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--~~~g~~P~~ia~SpDGk~lyVan~~~- 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--FSVGPRVHIIGNCASSACLLFFLFGS- 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--CCBSCCTTSEEECTTSSCEEEEECSS-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--cccCCCcceEEEcCCCCEEEEEccCC-
Confidence 79999999998654311 11223466666 5555555555541100 00000114899999999876653221
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEE--EEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
...+.+ +|+.+ +..+. .+.. +...|+|+.
T Consensus 146 -----------------------------------------~~~v~V~~iD~~t--v~~i~-v~~~-----~~~~p~g~~ 176 (368)
T 1mda_H 146 -----------------------------------------SAAAGLSVPGASD--DQLTK-SASC-----FHIHPGAAA 176 (368)
T ss_dssp -----------------------------------------SCEEEEEETTTEE--EEEEE-CSSC-----CCCEEEETT
T ss_pred -----------------------------------------CCeEEEEEEchhh--ceEEE-CCCc-----eEEccCCCe
Confidence 245666 78776 44442 2221 234678887
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCC-----Cccee-cCCCCccccceeecCC
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-----LPVVN-LTESISSAFFPRFSPD 327 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~-lt~~~~~~~~p~~SpD 327 (771)
.++... ....+..+++ ++ ++... .+........|..+++
T Consensus 177 ----~~~~~~--------------~dg~~~~vd~-----------------~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 177 ----THYLGS--------------CPASLAASDL-----------------AAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp ----EEECCC--------------CTTSCEEEEC-----------------CSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred ----EEEEEc--------------CCCCEEEEEC-----------------ccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 655431 2235566776 32 22211 0000000122323889
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCC-CCcccccCCCCCCccccCCCEEEEE
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD-CFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
++.++|.+. . .++++|+.++.... ...+...... .-.+..........+++||+++|++
T Consensus 222 ~~~~~~vs~-~-----------~V~viD~~~~~~~v--------~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 222 PGMLVWAVA-S-----------SILQGDIPAAGATM--------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp TTEEEECBS-S-----------CCEEEECCSSCCEE--------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred CCEEEEEcC-C-----------EEEEEECCCCcceE--------EEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 999999886 3 38889986543211 1111000000 0000000112235799999999877
Q ss_pred eeeC-C-----eeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 407 SIWG-S-----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 407 ~~~~-~-----~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.... + ...+..||++++++..-...........+++||+.++++.... .-.+.++|+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~--~~~VsVID~~t~ 347 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG--TEVLDIYDAASD 347 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEESSSC
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC--CCeEEEEECCCC
Confidence 5522 2 2345589999987654332222244568899999888777621 355888887544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=90.93 Aligned_cols=189 Identities=13% Similarity=-0.024 Sum_probs=106.1
Q ss_pred ceEEEEEccCCceeeccCCCCC----CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~----~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+++|+.++++......... ..+..+++ ++++ |+...+. ....|+++|+
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~----lyv~~~~-------------~~~~v~viD~------ 159 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY----VYVNCWS-------------YQNRILKIDT------ 159 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE----EEEEECT-------------TCCEEEEEET------
T ss_pred CeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE----EEEEcCC-------------CCCEEEEEEC------
Confidence 6899999999887543101110 14456666 5554 5554321 1237999998
Q ss_pred hhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEe
Q 004141 294 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 373 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 373 (771)
++++...............++|||+ |++.................|+++|..+++.. .
T Consensus 160 -----------~t~~~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----------~ 217 (328)
T 3dsm_A 160 -----------ETDKVVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----------K 217 (328)
T ss_dssp -----------TTTEEEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----------E
T ss_pred -----------CCCeEEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEE----------E
Confidence 6555433222233456788999998 55555432100000001257999998776531 1
Q ss_pred cccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec--CC-CCCceeeEEeecCCEEEEE
Q 004141 374 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PA-ESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 374 ~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~--~~-~~~~~~~~~s~dg~~l~~~ 450 (771)
.+..+. + .....++++||+++||++.. .++.+|.+++++.... .. ........++|+++.|+++
T Consensus 218 ~~~~~~-g-------~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 218 QFKFKL-G-------DWPSEVQLNGTRDTLYWINN-----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp EEECCT-T-------CCCEEEEECTTSCEEEEESS-----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred EEecCC-C-------CCceeEEEecCCCEEEEEcc-----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEE
Confidence 111100 0 12356789999998877642 7899999988864211 11 1223445678777777766
Q ss_pred E-eCCCCCCeEEEEEec
Q 004141 451 S-SSPVDVPQVKYGYFV 466 (771)
Q Consensus 451 ~-~~~~~p~~l~~~~~~ 466 (771)
. .+......|++++..
T Consensus 285 ~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp ECTTSSSEEEEEEECTT
T ss_pred cccccccCCEEEEECCC
Confidence 4 222345667777754
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=96.00 Aligned_cols=273 Identities=8% Similarity=-0.004 Sum_probs=149.1
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
.+++++++|+..+..+ .+.+|+....+.+..+. +..+. +..+.|+|++ .|+..+.+...+ .|+..
T Consensus 127 ~~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~-~h~~~------V~~l~~~~~~-~l~s~s~dg~i~--vwd~~ 191 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS-GHDGG------VWALKYAHGG-ILVSGSTDRTVR--VWDIK 191 (464)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSSC------EEEEEECSTT-EEEEEETTSCEE--EEETT
T ss_pred EEEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEe-CCCcC------EEEEEEcCCC-EEEEEeCCCCEE--EEECC
Confidence 4556788887765543 45566322222222221 11122 2689999999 677666655432 33322
Q ss_pred CCCCCCCCccCCCCCCccccc--CCcCcccCCccCceEEEEEccCCceeeccCCC--------------------CCCcc
Q 004141 185 STKGGSSDKDCNSWKGQGDWE--EDWGETYAGKRQPSLFVININSGEVQAVKGIP--------------------KSLSV 242 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~--~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~--------------------~~~~~ 242 (771)
..........+........+. ++....+++.....|.+||+.++......... .....
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSS
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccc
Confidence 221111111222222333344 34344556667789999999877533210000 00011
Q ss_pred ceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccc
Q 004141 243 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFF 321 (771)
Q Consensus 243 ~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~ 321 (771)
.-..++++++. |+..+ .+..|.++|+ .+++ ...+..+...+..
T Consensus 272 ~v~~~~~~~~~----l~~~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~~~~v~~ 315 (464)
T 3v7d_B 272 SVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRIYS 315 (464)
T ss_dssp CEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEE
T ss_pred eEEEEcCCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCEEE
Confidence 12345788876 66554 3347888898 4444 4556666777899
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
..|+|||+.|+..+.+. .|.+||+.+++........ ...+..+.|+ ++
T Consensus 316 ~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~h-------------------~~~v~~~~~~--~~ 363 (464)
T 3v7d_B 316 TIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQGH-------------------TALVGLLRLS--DK 363 (464)
T ss_dssp EEEETTTTEEEEEETTS-----------CEEEEETTTTEEEEEECCC-------------------SSCEEEEEEC--SS
T ss_pred EEEcCCCCEEEEEeCCC-----------cEEEEECCCCcEEEEEeCC-------------------CCcEEEEEEc--CC
Confidence 99999999988766553 4889998876532111100 0123344565 45
Q ss_pred EEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 402 TMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.| ++...++. |..+|+.+++...............++++++.++... + ..+.+.++.++
T Consensus 364 ~l-~s~s~dg~--v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g 422 (464)
T 3v7d_B 364 FL-VSAAADGS--IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E----NQFNIYNLRSG 422 (464)
T ss_dssp EE-EEEETTSE--EEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T----TEEEEEETTTC
T ss_pred EE-EEEeCCCc--EEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C----CeEEEEECCCC
Confidence 44 55555555 4445777776554443333445568899998666543 2 36777777654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-06 Score=88.63 Aligned_cols=155 Identities=11% Similarity=0.031 Sum_probs=96.4
Q ss_pred cceEEEeCC--CCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 100 GASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
.+...+|+| +|++++..+..+ .+.+| ..++..++...... ..+.+++|+|||+.|+..+.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~~~~--------~~i~~~~~~pdg~~lasg~~--- 190 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSAKSD--------VEYSSGVLHKDSLLLALYSP--- 190 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECCCSS--------CCCCEEEECTTSCEEEEECT---
T ss_pred CEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEecCCC--------CceEEEEECCCCCEEEEEcC---
Confidence 477899999 999998776543 34555 23333333222111 11368999999998887532
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCCCCCccceEEEecCCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~~~~~~~~~~wspDg~~ 253 (771)
...|.+||+.+++.. .+. ......+..+.|+|||+.
T Consensus 191 -----------------------------------------dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 191 -----------------------------------------DGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -----------------------------------------TSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECTTSSE
T ss_pred -----------------------------------------CCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeCCCCE
Confidence 367999999988764 442 114567889999999997
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC---CCcccc--ceeecCC
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---SISSAF--FPRFSPD 327 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~---~~~~~~--~p~~SpD 327 (771)
|+..+ .. .|.++|+ ..++. ..+.. +..... ...|+||
T Consensus 229 ----l~s~~---------------~~-~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 229 ----MVVEC---------------DQ-TVVCFDL-----------------RKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp ----EEEEE---------------SS-BEEEEET-----------------TSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred ----EEEEe---------------CC-eEEEEEc-----------------CCCCcceeecccccccccccceEEEECCC
Confidence 77665 11 6888887 33332 22221 222222 4999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
|++|+..+..+ ..+.+|++..+
T Consensus 272 g~~l~~~s~~d----------~~i~v~~~~~~ 293 (343)
T 3lrv_A 272 GKNMIAYSNES----------NSLTIYKFDKK 293 (343)
T ss_dssp SSEEEEEETTT----------TEEEEEEECTT
T ss_pred CCEEEEecCCC----------CcEEEEEEccc
Confidence 99998766522 24667776543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-06 Score=84.18 Aligned_cols=179 Identities=8% Similarity=-0.047 Sum_probs=109.1
Q ss_pred ceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|++++++++..+.+ .... ..+..++++|+++. |+++.. ....|+++++
T Consensus 58 ~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~----lyv~d~--------------~~~~I~~~~~--------- 108 (267)
T 1npe_A 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM--------- 108 (267)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCe----EEEEEC--------------CCCEEEEEEc---------
Confidence 6899999988776555 2322 35678899998876 666541 2237899997
Q ss_pred hhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 297 LELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.+.. ........+++|++..|++..... ....|+++++++...+.+ ..
T Consensus 109 --------~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~--------~~~~I~~~~~dg~~~~~~-------~~-- 163 (267)
T 1npe_A 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRIL-------AQ-- 163 (267)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEE-------EC--
T ss_pred --------CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC--------CCcEEEEEecCCCCcEEE-------EE--
Confidence 4444333332 223456789999988888876431 124688888765332111 00
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
. ... ....+++++|++.||++.. +...|++++++++..+.+..... .-..++.+++.|+++...
T Consensus 164 -~--~~~-------~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d~~~lyva~~~-- 227 (267)
T 1npe_A 164 -D--NLG-------LPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWK-- 227 (267)
T ss_dssp -T--TCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETT--
T ss_pred -C--CCC-------CCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCC--CceEEEEeCCEEEEEECC--
Confidence 0 001 2346789999988887754 33578889997766555543222 112456678888776543
Q ss_pred CCCeEEEEEecc
Q 004141 456 DVPQVKYGYFVD 467 (771)
Q Consensus 456 ~p~~l~~~~~~~ 467 (771)
..+|++++..+
T Consensus 228 -~~~v~~~d~~~ 238 (267)
T 1npe_A 228 -TNSVIAMDLAI 238 (267)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCeEEEEeCCC
Confidence 24577776543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-06 Score=89.57 Aligned_cols=252 Identities=7% Similarity=-0.091 Sum_probs=132.3
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
-|.+++||+.|.++... ...|+.++. . ++...+.... ......+++|||+.++. .. +...
T Consensus 49 gp~~~~~g~~l~~~d~~--------~~~i~~~~~--~-g~~~~~~~~~-----~~~~gl~~d~dG~l~v~-~~---~~~~ 108 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLV--------GRRVLGWRE--D-GTVDVLLDAT-----AFTNGNAVDAQQRLVHC-EH---GRRA 108 (305)
T ss_dssp EEEEEGGGTEEEEEETT--------TTEEEEEET--T-SCEEEEEESC-----SCEEEEEECTTSCEEEE-ET---TTTE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEeC--C-CCEEEEeCCC-----CccceeeECCCCCEEEE-EC---CCCE
Confidence 34556788888876432 235666543 2 2333333222 34677899999984433 22 2235
Q ss_pred EEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 126 QFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
++.+...+..+.+........ ......+.++|||+ |++. +........ +.
T Consensus 109 v~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~dG~-l~~t-d~~~g~~~~-----------------------~~ 158 (305)
T 3dr2_A 109 ITRSDADGQAHLLVGRYAGKR-----LNSPNDLIVARDGA-IWFT-DPPFGLRKP-----------------------SQ 158 (305)
T ss_dssp EEEECTTSCEEEEECEETTEE-----CSCCCCEEECTTSC-EEEE-CCSGGGSCG-----------------------GG
T ss_pred EEEECCCCCEEEEEeccCCCc-----cCCCCCEEECCCCC-EEEe-CcCCCcccc-----------------------cc
Confidence 666664455444433211110 01124789999997 5443 110000000 00
Q ss_pred CCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
.... ........||++|.++++.+.+ . .......++|+|||+. |++...... .+....|+++
T Consensus 159 ~~~~--~~~~~~~~v~~~d~~~g~~~~~--~-~~~~p~gl~~spdg~~----lyv~~~~~~---------~~~~~~i~~~ 220 (305)
T 3dr2_A 159 GCPA--DPELAHHSVYRLPPDGSPLQRM--A-DLDHPNGLAFSPDEQT----LYVSQTPEQ---------GHGSVEITAF 220 (305)
T ss_dssp SCCC--CCSSSCEEEEEECSSSCCCEEE--E-EESSEEEEEECTTSSE----EEEEECCC------------CCCEEEEE
T ss_pred cccc--ccccCCCeEEEEcCCCCcEEEE--e-cCCCCcceEEcCCCCE----EEEEecCCc---------CCCCCEEEEE
Confidence 0000 0011236899999988888877 4 3334567899999997 766542110 0012478888
Q ss_pred ecccccchhhhhhhhcCCCCCCcc---eec-CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 286 RVSLYKSEASELELKESSSEDLPV---VNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~---~~l-t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
++ .++.. +.+ ....+......+++||+ | |++... .|++++.++...
T Consensus 221 ~~-----------------~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-l-wv~~~~-----------gv~~~~~~g~~~ 270 (305)
T 3dr2_A 221 AW-----------------RDGALHDRRHFASVPDGLPDGFCVDRGGW-L-WSSSGT-----------GVCVFDSDGQLL 270 (305)
T ss_dssp EE-----------------ETTEEEEEEEEECCSSSCCCSEEECTTSC-E-EECCSS-----------EEEEECTTSCEE
T ss_pred Ee-----------------cCCCccCCeEEEECCCCCCCeEEECCCCC-E-EEecCC-----------cEEEECCCCCEE
Confidence 87 22211 111 11233455678899998 4 444321 388888643211
Q ss_pred CCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 362 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
..+ ..+ ..+..++|++|++.|++++. ..||++++
T Consensus 271 ~~~-----------~~~----------~~~~~~~f~~d~~~L~it~~----~~l~~~~~ 304 (305)
T 3dr2_A 271 GHI-----------PTP----------GTASNCTFDQAQQRLFITGG----PCLWMLPL 304 (305)
T ss_dssp EEE-----------ECS----------SCCCEEEECTTSCEEEEEET----TEEEEEEC
T ss_pred EEE-----------ECC----------CceeEEEEeCCCCEEEEEcC----CeEEEEEC
Confidence 111 010 02456788999998887764 26887764
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.4e-08 Score=99.56 Aligned_cols=96 Identities=11% Similarity=0.022 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..|.||++||.+++ ...|...+..|. +.|+++|+++... ...++++.+.+..++... ..
T Consensus 22 ~~~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~~--------------~~~~~~~a~~~~~~i~~~-~~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAAP--------------LDSIHSLAAYYIDCIRQV-QP 81 (283)
T ss_dssp SSSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTSC--------------CSCHHHHHHHHHHHHTTT-CC
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCCC--------------CCCHHHHHHHHHHHHHHh-CC
Confidence 345678999997765 446777777774 9999999965211 123445444443333331 12
Q ss_pred CCeEEEEEcChhHHHHHHHHhhC---CCcee---EEEecCCc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQA---PDKFV---AAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~---p~~~~---~~v~~~p~ 650 (771)
.+++.|+||||||.+++.++.+. |+.+. .+++.++.
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~ 123 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 123 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCC
Confidence 36899999999999999998865 77787 88877764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2e-06 Score=89.19 Aligned_cols=233 Identities=10% Similarity=0.050 Sum_probs=126.7
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
.|.+++|+..+.++... ...|+.++.. +++...+.. + .....++|+|||+.++.. . ..
T Consensus 53 gp~~~~~~~~l~~~d~~--------~~~i~~~d~~--~~~~~~~~~-~-----~~v~~i~~~~dg~l~v~~-~-----~g 110 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL--------ERELHELHLA--SGRKTVHAL-P-----FMGSALAKISDSKQLIAS-D-----DG 110 (326)
T ss_dssp EEEEETTTTEEEEEEGG--------GTEEEEEETT--TTEEEEEEC-S-----SCEEEEEEEETTEEEEEE-T-----TE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEECC--CCcEEEEEC-C-----CcceEEEEeCCCeEEEEE-C-----CC
Confidence 34456677777765322 2467776643 223333321 1 346778899999876543 2 23
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
++.++ .+++.+.+........ ...+..+.++|||+ |++.......
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~v~~~~~~~---------------------------- 156 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLP-----GNRSNDGRMHPSGA-LWIGTMGRKA---------------------------- 156 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCT-----TEEEEEEEECTTSC-EEEEEEETTC----------------------------
T ss_pred EEEEECCCCcEEEEeeCCCCCC-----CCCCCCEEECCCCC-EEEEeCCCcC----------------------------
Confidence 77777 5566555544321110 11235789999998 4443321100
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
......||+++ +++.+.+ .........++|+|||+. |++... ....|++
T Consensus 157 ---------~~~~~~l~~~~--~g~~~~~--~~~~~~~~~i~~s~dg~~----lyv~~~--------------~~~~I~~ 205 (326)
T 2ghs_A 157 ---------ETGAGSIYHVA--KGKVTKL--FADISIPNSICFSPDGTT----GYFVDT--------------KVNRLMR 205 (326)
T ss_dssp ---------CTTCEEEEEEE--TTEEEEE--EEEESSEEEEEECTTSCE----EEEEET--------------TTCEEEE
T ss_pred ---------CCCceEEEEEe--CCcEEEe--eCCCcccCCeEEcCCCCE----EEEEEC--------------CCCEEEE
Confidence 01236789998 5666665 222224567899999997 777641 2237899
Q ss_pred EecccccchhhhhhhhcCCCCCC-cc---e---ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 285 VRVSLYKSEASELELKESSSEDL-PV---V---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~-~~---~---~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++++. .++ .. + .+...........+++||+ |+..... ...|+++|.+
T Consensus 206 ~d~~~---------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~----------~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDA---------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWG----------EGAVDRYDTD 259 (326)
T ss_dssp EEBCT---------------TTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEET----------TTEEEEECTT
T ss_pred EEccc---------------ccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeC----------CCEEEEECCC
Confidence 98720 133 21 1 1222234456678899997 3333322 1358888873
Q ss_pred CCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc-cCCCEEEEEeeeCC
Q 004141 358 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 411 (771)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s-~Dg~~l~~~~~~~~ 411 (771)
++... .+..+. ..+..++|+ +|++.|++++...+
T Consensus 260 -g~~~~----------~i~~~~---------~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 260 -GNHIA----------RYEVPG---------KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp -CCEEE----------EEECSC---------SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred -CCEEE----------EEECCC---------CCcEEEEEecCCCCEEEEEecCCC
Confidence 32210 000000 113456787 89888888776543
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.1e-06 Score=85.08 Aligned_cols=150 Identities=9% Similarity=0.094 Sum_probs=89.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.++|++++++... ++....+..+.++|||+ ++++++...... .+ ......|+++|.
T Consensus 152 ~~v~viD~~t~~~~~~--i~~g~~p~~i~~~~dG~-----l~v~~~~~~~~~---~~-~~~~~~v~~id~---------- 210 (328)
T 3dsm_A 152 NRILKIDTETDKVVDE--LTIGIQPTSLVMDKYNK-----MWTITDGGYEGS---PY-GYEAPSLYRIDA---------- 210 (328)
T ss_dssp CEEEEEETTTTEEEEE--EECSSCBCCCEECTTSE-----EEEEBCCBCTTC---SS-CBCCCEEEEEET----------
T ss_pred CEEEEEECCCCeEEEE--EEcCCCccceEEcCCCC-----EEEEECCCccCC---cc-ccCCceEEEEEC----------
Confidence 6899999999886554 23334566788999997 766663221000 00 001247999997
Q ss_pred hhhcCCCCCCcce-ecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVV-NLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~-~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++++.. .+.-. .......+|||||++|++... .|+++|..+++...... .
T Consensus 211 -------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-------------~v~~~d~~t~~~~~~~~--------~ 262 (328)
T 3dsm_A 211 -------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-------------DIWRMPVEADRVPVRPF--------L 262 (328)
T ss_dssp -------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-------------SEEEEETTCSSCCSSCS--------B
T ss_pred -------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-------------EEEEEECCCCceeeeee--------e
Confidence 666543 33221 235678999999998876432 48999988766421100 0
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeee--CCeeEEEEEECCCCcEE
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELL 426 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~d~~tg~~~ 426 (771)
.. .. ..+..++++|++..|+++... .....|+++|.+ |++.
T Consensus 263 ~~--~~-------~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~ 305 (328)
T 3dsm_A 263 EF--RD-------TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI 305 (328)
T ss_dssp CC--CS-------SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred cC--CC-------CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence 00 00 123456789877778776421 245678888987 5543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.4e-06 Score=86.03 Aligned_cols=87 Identities=18% Similarity=0.087 Sum_probs=50.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCC---------CCCccccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG---------DCFPGLYS 388 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~f~g~~~ 388 (771)
......+|||||+| |++++. ...|.++|+.......+ +..+..... ....
T Consensus 322 ~pa~I~lS~DGrfL-YVSnrg---------~d~VavfdV~d~~~~~l-------v~~I~tGG~~~~~~~~~G~~~~---- 380 (462)
T 2ece_A 322 LVTDIDISLDDKFL-YLSLWG---------IGEVRQYDISNPFKPVL-------TGKVKLGGIFHRADHPAGHKLT---- 380 (462)
T ss_dssp CCCCEEECTTSCEE-EEEETT---------TTEEEEEECSSTTSCEE-------EEEEECBTTTTCBCCTTSCCCC----
T ss_pred ceeEEEECCCCCEE-EEEeCC---------CCEEEEEEecCCCCcEE-------EEEEEeCCeeccccccccccCC----
Confidence 46778999999976 566653 35688888753322111 111111100 1111
Q ss_pred CCCCCCccccCCCEEEEEee-----------eCCeeEEEEE--ECCCCcEE
Q 004141 389 SSILSNPWLSDGCTMLLSSI-----------WGSSQVIISV--NVSSGELL 426 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~~~-----------~~~~~~l~~~--d~~tg~~~ 426 (771)
.....+.+||||++||++.+ ......++.+ |.++| ++
T Consensus 381 ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~ 430 (462)
T 2ece_A 381 GAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LE 430 (462)
T ss_dssp SCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EE
T ss_pred CCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ce
Confidence 13467889999999988872 2334567755 66667 55
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.3e-06 Score=87.29 Aligned_cols=220 Identities=10% Similarity=-0.005 Sum_probs=122.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|+|+|+ | |+.+. ....++.++ .++....+.... .. ..++|+|||+.|+.....
T Consensus 131 ~~P~~la~d~~g~-l-yv~d~--~~~~I~~id~~~g~~~~~~~~~-~~----------~~ia~~~~g~~l~~~d~~---- 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-V-LAYQR--DDPRVRLISVDDNKVTTVHPGF-KG----------GKPAVTKDKQRVYSIGWE---- 191 (409)
T ss_dssp CCEEEEEECSTTE-E-EEEET--TTTEEEEEETTTTEEEEEEETC-CB----------CBCEECTTSSEEEEEBSS----
T ss_pred CCceEEEEeCCCC-E-EEEec--CCCcEEEEECCCCEEEEeeccC-CC----------CceeEecCCCcEEEEecC----
Confidence 3466788999998 4 44443 234577776 445544443331 11 238999999977665321
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee-eccC-CC-CCCccceEEEecCCCCC
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKG-IP-KSLSVGQVVWAPLNEGL 254 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~-~l~~-~~-~~~~~~~~~wspDg~~~ 254 (771)
....|++++..++... .+.. .. ....+..++++|++..
T Consensus 192 --------------------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~- 232 (409)
T 3hrp_A 192 --------------------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW- 232 (409)
T ss_dssp --------------------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-
T ss_pred --------------------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-
Confidence 1137899998876542 2200 12 2335667899996665
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec----CCCC-ccc-c-ceeecCC
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TESI-SSA-F-FPRFSPD 327 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l----t~~~-~~~-~-~p~~SpD 327 (771)
|++.. ....|+++|+ +++....+ .... ... . ..+|+|+
T Consensus 233 ---lyv~d---------------~~~~I~~~d~-----------------~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 233 ---LYFVD---------------SNKNFGRFNV-----------------KTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp ---EEEEC---------------TTCEEEEEET-----------------TTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred ---EEEEE---------------CCCcEEEEEC-----------------CCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 77632 2237999997 55544433 2211 122 3 7899998
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc-cCCCCCcccccCCCCCCccccCCCEEEEE
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC-AEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
+..|++.... ...|++++.++. ...+. +.......... .....| ..+..+++++||+ ||++
T Consensus 278 ~g~lyv~d~~----------~~~I~~~~~~g~-~~~~~-g~~~~~g~~dg~~~~~~~-----~~P~gia~d~dG~-lyva 339 (409)
T 3hrp_A 278 DSNFYMSDQN----------LSSVYKITPDGE-CEWFC-GSATQKTVQDGLREEALF-----AQPNGMTVDEDGN-FYIV 339 (409)
T ss_dssp TTEEEEEETT----------TTEEEEECTTCC-EEEEE-ECTTCCSCBCEEGGGCBC-----SSEEEEEECTTCC-EEEE
T ss_pred CCEEEEEeCC----------CCEEEEEecCCC-EEEEE-eCCCCCCcCCCcccccEe-----CCCeEEEEeCCCC-EEEE
Confidence 7878776543 246888887643 11100 00000000000 000001 1234678999998 6655
Q ss_pred eeeCCeeEEEEEECCCCcEEEecC
Q 004141 407 SIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
.. .+...|+++++.+|++..+..
T Consensus 340 d~-~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 340 DG-FKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp ET-TTTCEEEEEETTTTEEEEEEE
T ss_pred eC-CCCCEEEEEECCCCEEEEEeC
Confidence 32 145678889977888877654
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-07 Score=82.14 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++| +... .|... |+ .+|.|+++|+|| +|.+... . . . .+++.+.+..+++. ++.+
T Consensus 22 ~~~vv~~H-~~~~----~~~~~---l~-~~~~v~~~d~~G---~G~s~~~--~-~--~--~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EEAS----RWPEA---LP-EGYAFYLLDLPG---YGRTEGP--R-M--A--PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SSGG----GCCSC---CC-TTSEEEEECCTT---STTCCCC--C-C--C--HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CCHH----HHHHH---Hh-CCcEEEEECCCC---CCCCCCC--C-C--C--HHHHHHHHHHHHHH--cCCC
Confidence 47899999 2221 22222 43 459999999999 4443211 1 1 1 55555555555554 2456
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
++.++|||+||.+++.++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999885
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.50 E-value=2.2e-06 Score=87.64 Aligned_cols=201 Identities=12% Similarity=0.048 Sum_probs=114.8
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.++.|+|++..|+++.. ....|+++|.++++.+.+.
T Consensus 16 Egp~w~~~~~~l~~~d~-------------------------------------------~~~~i~~~d~~~~~~~~~~- 51 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI-------------------------------------------PAKKVCRWDSFTKQVQRVT- 51 (297)
T ss_dssp EEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTTCCEEEEE-
T ss_pred cCCeEECCCCEEEEEEC-------------------------------------------CCCEEEEEECCCCcEEEEe-
Confidence 58999999888888632 2368999999988776552
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 315 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~ 315 (771)
....+..++++|||+ |++.. ...|+++|+ ++++.+.+...
T Consensus 52 --~~~~~~~i~~~~dG~-----l~v~~----------------~~~l~~~d~-----------------~~g~~~~~~~~ 91 (297)
T 3g4e_A 52 --MDAPVSSVALRQSGG-----YVATI----------------GTKFCALNW-----------------KEQSAVVLATV 91 (297)
T ss_dssp --CSSCEEEEEEBTTSS-----EEEEE----------------TTEEEEEET-----------------TTTEEEEEEEC
T ss_pred --CCCceEEEEECCCCC-----EEEEE----------------CCeEEEEEC-----------------CCCcEEEEEec
Confidence 223577889999998 44432 126888987 66665554322
Q ss_pred -----CccccceeecCCCCEEEEEecCCCCCCC-CccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004141 316 -----ISSAFFPRFSPDGKFLVFLSAKSSVDSG-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 316 -----~~~~~~p~~SpDG~~l~f~~~~~~~~~g-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
.......+++|||+ |++.......... .......||+++..+ ....+.... .
T Consensus 92 ~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-------------~------- 149 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-------------D------- 149 (297)
T ss_dssp CTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE-------------S-------
T ss_pred CCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CEEEEeecc-------------c-------
Confidence 12356788999999 5565533210000 001234688887542 221111000 0
Q ss_pred CCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE--E-ecC-C--CCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004141 390 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL--R-ITP-A--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 390 ~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~--~-l~~-~--~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~ 463 (771)
....++|+|||+.||++....+....|.++..+|++. + +.. . ........++++|+ |+++.... .+|+++
T Consensus 150 ~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~---~~v~~~ 225 (297)
T 3g4e_A 150 ISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNG---GRVIRL 225 (297)
T ss_dssp BEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETT---TEEEEE
T ss_pred cccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCC---CEEEEE
Confidence 1236789999998888766544433443344677653 1 211 1 12223345666764 54444322 347766
Q ss_pred Eec
Q 004141 464 YFV 466 (771)
Q Consensus 464 ~~~ 466 (771)
+..
T Consensus 226 d~~ 228 (297)
T 3g4e_A 226 DPV 228 (297)
T ss_dssp CTT
T ss_pred cCC
Confidence 644
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-05 Score=82.12 Aligned_cols=42 Identities=10% Similarity=-0.003 Sum_probs=29.0
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCcccc-ceeecCCCCEEEEEecCC
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAF-FPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~-~p~~SpDG~~l~f~~~~~ 338 (771)
..|.++|+ .+++ ...|..+...+. ..+|||||++|+..+.+.
T Consensus 305 gTIkIWDl-----------------~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~ 348 (356)
T 2w18_A 305 GTIAIWDL-----------------LLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDG 348 (356)
T ss_dssp SCEEEEET-----------------TTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTS
T ss_pred CcEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCC
Confidence 47889998 6665 455665555444 589999999998777553
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=9.5e-06 Score=87.66 Aligned_cols=168 Identities=11% Similarity=0.110 Sum_probs=97.3
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC--------cceEEEecCCcccccccCCCcccceeecCC-CCeEE
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS--------QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIA 168 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~wSpD-g~~la 168 (771)
.+...+|||||++||...... .......+|+ .+ +.........+..+ .+..++|+|+ ++.|+
T Consensus 94 ~v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~------~V~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGG------MVIDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGG------SEEEEEECSSCTTEEE
T ss_pred cccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCcCCcceeeeeeccCCCCC------ceEEEEECCCCCCEEE
Confidence 478899999999998632111 1122444552 11 11111222111111 2368999998 66666
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004141 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
..+. +..|.+||+.++...... ......+..++||
T Consensus 167 s~s~--------------------------------------------Dg~v~iwD~~~~~~~~~~-~~~~~~v~~v~ws 201 (434)
T 2oit_A 167 VCLA--------------------------------------------DGSIAVLQVTETVKVCAT-LPSTVAVTSVCWS 201 (434)
T ss_dssp EEET--------------------------------------------TSCEEEEEESSSEEEEEE-ECGGGCEEEEEEC
T ss_pred EEEC--------------------------------------------CCeEEEEEcCCCcceeec-cCCCCceeEEEEc
Confidence 6533 257899999887543221 2234467889999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-------CCccccc
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFF 321 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~ 321 (771)
|||+. |+..+ .+..|.++|+ .+.....+.. +...+.+
T Consensus 202 pdg~~----lasgs---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 202 PKGKQ----LAVGK---------------QNGTVVQYLP-----------------TLQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp TTSSC----EEEEE---------------TTSCEEEECT-----------------TCCEEEEECCCTTCCTTSCEEEEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEcc-----------------CCcccccccCCcccCCCCceeEEE
Confidence 99998 88765 2336888886 3222222221 1236788
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
..|++++..++..+..+ |.......+.++++...
T Consensus 246 v~w~~~~~~l~~~~~~d----g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAAD----GTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETT----CCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCC----CccCCCCceEEEEeccC
Confidence 99999998876555443 21112245777887654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-05 Score=82.32 Aligned_cols=231 Identities=10% Similarity=0.039 Sum_probs=111.4
Q ss_pred ccccceEEEeCCC----CCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEec
Q 004141 97 EMTGASAVVPSPS----GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 97 ~~~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
+...+...++||| |++++-.... ..++.+ .++ +.+.....+. |+.+....+||||+.++-..-
T Consensus 110 ~~~~v~sla~spd~~~~~~~l~s~g~~----~~v~~l-~~g--~lv~ss~~g~------d~~V~~~~~s~dG~~~~s~~~ 176 (356)
T 2w18_A 110 EIREIRALFCSSDDESEKQVLLKSGNI----KAVLGL-TKR--RLVSSSGTLS------DQQVEVMTFAEDGGGKENQFL 176 (356)
T ss_dssp SEEEEEEECC------CCEEEEEEEEE----EEEEEE-TTT--EEEEEESSST------TCEEEEEEECTTSCEEEEEEE
T ss_pred cccceEEEEECCCccccccEEEeCCCe----EEEEec-CCC--cEEEecccCC------CCcEEEEEECCCCceeeeecc
Confidence 3346778889999 8888763321 112222 222 2222211111 223367889999987664322
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccC--CcCccc-CCccCceEEEEEccCCceee-ccCCC-CCCccceEEE
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETY-AGKRQPSLFVININSGEVQA-VKGIP-KSLSVGQVVW 247 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~-~~~~~~~l~v~d~~~~~~~~-l~~~~-~~~~~~~~~w 247 (771)
... ......|++ +-++.+ .+..+..|.+||+.+|+... +.+.. ....+...+|
T Consensus 177 ~~~----------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 177 MPP----------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp CCC----------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCC----------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 111 011122333 112333 33567899999999998544 42111 1124556689
Q ss_pred ecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC------CCCccccc
Q 004141 248 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT------ESISSAFF 321 (771)
Q Consensus 248 spDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt------~~~~~~~~ 321 (771)
||||+. ++..+....... ...-.....|..+|. .++...... .+.....+
T Consensus 235 SpdG~~----lvs~s~~~~~w~---laSGs~D~tIklWd~-----------------~tgk~l~v~~~~~p~Gh~~~~ls 290 (356)
T 2w18_A 235 SEMGLL----FIVLSHPCAKES---ESLRSPVFQLIVINP-----------------KTTLSVGVMLYCLPPGQAGRFLE 290 (356)
T ss_dssp EETTEE----EEEEC---------------CCEEEEEEET-----------------TTTEEEEEEEECCCTTCCCCEEE
T ss_pred CCCCCE----EEEeccCCCcce---eeccCCCcEEEEEEC-----------------CCCEEEEEEEeeccCCCcceeEc
Confidence 999997 766543111000 001123346666776 555432211 11111112
Q ss_pred eeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCC
Q 004141 322 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 322 p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
.. .+|..++-.+.+ ..|.+||+.+++......+..+ .....++|||||+
T Consensus 291 g~--~sg~~lASgS~D-----------gTIkIWDl~tGk~l~tL~gH~~------------------~vvs~vafSPDG~ 339 (356)
T 2w18_A 291 GD--VKDHCAAAILTS-----------GTIAIWDLLLGQCTALLPPVSD------------------QHWSFVKWSGTDS 339 (356)
T ss_dssp EE--EETTEEEEEETT-----------SCEEEEETTTCSEEEEECCC--------------------CCCCEEEECSSSS
T ss_pred cc--cCCCEEEEEcCC-----------CcEEEEECCCCcEEEEecCCCC------------------CeEEEEEECCCCC
Confidence 22 225555544443 3589999998775322111100 0122368999999
Q ss_pred EEEEEeeeCCeeEEEEE
Q 004141 402 TMLLSSIWGSSQVIISV 418 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~ 418 (771)
+| ++.+.++..+||.+
T Consensus 340 ~L-aSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HL-LAGQKDGNIFVYHY 355 (356)
T ss_dssp EE-EEECTTSCEEEEEE
T ss_pred EE-EEEECCCcEEEecC
Confidence 65 56667777788753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-05 Score=86.91 Aligned_cols=306 Identities=9% Similarity=-0.021 Sum_probs=156.8
Q ss_pred eechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEE
Q 004141 61 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKE 138 (771)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (771)
+..-+..+...+.+.+|++... .....+. .....+....|+ ++.++..+..+ .+.+| ..++....
T Consensus 128 ~g~~l~sg~~dg~i~vwd~~~~-~~~~~~~-----~h~~~v~~~~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~ 194 (445)
T 2ovr_B 128 CGNRIVSGSDDNTLKVWSAVTG-KCLRTLV-----GHTGGVWSSQMR--DNIIISGSTDR-----TLKVWNAETGECIHT 194 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTC-CEEEECC-----CCSSCEEEEEEE--TTEEEEEETTS-----CEEEEETTTTEEEEE
T ss_pred cCCEEEEEECCCcEEEEECCCC-cEEEEEc-----CCCCCEEEEEec--CCEEEEEeCCC-----eEEEEECCcCcEEEE
Confidence 3333344445567777776432 1112221 122456777776 55676654432 34555 33333332
Q ss_pred EecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCc
Q 004141 139 FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 218 (771)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~ 218 (771)
..... + .+.++.|+ ++.|+..+.+.... .|+............+........+ +....+++....
T Consensus 195 ~~~h~---~------~v~~~~~~--~~~l~s~s~dg~i~--~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg 259 (445)
T 2ovr_B 195 LYGHT---S------TVRCMHLH--EKRVVSGSRDATLR--VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF 259 (445)
T ss_dssp ECCCS---S------CEEEEEEE--TTEEEEEETTSEEE--EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred ECCCC---C------cEEEEEec--CCEEEEEeCCCEEE--EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence 22111 1 12466664 56677766554322 2222111111111111222222233 334455566678
Q ss_pred eEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhh
Q 004141 219 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 298 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 298 (771)
.|.+||+.+++..... ......+..+.| |++. |+..+ .+..|.++|+
T Consensus 260 ~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~---------------~d~~i~i~d~----------- 306 (445)
T 2ovr_B 260 MVKVWDPETETCLHTL-QGHTNRVYSLQF--DGIH----VVSGS---------------LDTSIRVWDV----------- 306 (445)
T ss_dssp CEEEEEGGGTEEEEEE-CCCSSCEEEEEE--CSSE----EEEEE---------------TTSCEEEEET-----------
T ss_pred EEEEEECCCCcEeEEe-cCCCCceEEEEE--CCCE----EEEEe---------------CCCeEEEEEC-----------
Confidence 9999999988765441 223345666666 7776 66554 3347888887
Q ss_pred hhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004141 299 LKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 299 ~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
.+++ ...+..+...+.. ++++++.|+..+.+ ..|.+||+.+++.... +..
T Consensus 307 ------~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~----------~~~ 357 (445)
T 2ovr_B 307 ------ETGNCIHTLTGHQSLTSG--MELKDNILVSGNAD-----------STVKIWDIKTGQCLQT----------LQG 357 (445)
T ss_dssp ------TTCCEEEEECCCCSCEEE--EEEETTEEEEEETT-----------SCEEEEETTTCCEEEE----------ECS
T ss_pred ------CCCCEEEEEcCCcccEEE--EEEeCCEEEEEeCC-----------CeEEEEECCCCcEEEE----------Ecc
Confidence 4444 3445444444443 44567777766544 3588999877553211 100
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec------CCCCCceeeEEeecCCEEEEEE
Q 004141 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT------PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~------~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
... ....+..++| +++.| ++...++. |..+|+.+++..... ...+.+....|++++..++...
T Consensus 358 ~~~------~~~~v~~~~~--~~~~l-~s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~ 426 (445)
T 2ovr_B 358 PNK------HQSAVTCLQF--NKNFV-ITSSDDGT--VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGS 426 (445)
T ss_dssp TTS------CSSCEEEEEE--CSSEE-EEEETTSE--EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CCC------CCCCEEEEEE--CCCEE-EEEeCCCe--EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcc
Confidence 000 0012233455 45544 55555555 444578788755432 1222344567888877666666
Q ss_pred eCCCCCCeEEEEEecc
Q 004141 452 SSPVDVPQVKYGYFVD 467 (771)
Q Consensus 452 ~~~~~p~~l~~~~~~~ 467 (771)
.+.+.+..+++.++..
T Consensus 427 ~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 427 RNGTEETKLLVLDFDV 442 (445)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred cCCCCccEEEEEECCC
Confidence 6666678888888753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-06 Score=90.34 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=59.6
Q ss_pred CceEEEEEccCC-----ce------eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 217 QPSLFVININSG-----EV------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 217 ~~~l~v~d~~~~-----~~------~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
...|.+||+.++ +. ..+. ......+..++|+|++.. ++.++. .+..|.++
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~----~las~s--------------~Dg~v~iw 177 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPS----MVAVCL--------------ADGSIAVL 177 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTT----EEEEEE--------------TTSCEEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCC----EEEEEE--------------CCCeEEEE
Confidence 368899998764 11 1110 122446889999999544 544442 23368888
Q ss_pred ecccccchhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 286 RVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 286 d~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
|+ .++... ....+...+...+|||||++|+..+.+. .|.+||..
T Consensus 178 D~-----------------~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-----------~v~iwd~~ 222 (434)
T 2oit_A 178 QV-----------------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-----------TVVQYLPT 222 (434)
T ss_dssp EE-----------------SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-----------CEEEECTT
T ss_pred Ec-----------------CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-----------cEEEEccC
Confidence 87 444322 2223345688899999999998777553 48888876
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-06 Score=93.21 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=67.0
Q ss_pred CCcEEEEEcCCCCCC------CCCcch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcC---------CCCcc---
Q 004141 536 CDPLIVVLHGGPHSV------SLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL---------PGKVG--- 593 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~------~~~~~~----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~---------~~~~~--- 593 (771)
..|.||++||.+... ....|. ..+..|+++||.|+++|++| +|.+..... .+..+
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G---~G~S~~~~~~l~~~i~~g~g~sg~~~ 127 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSA---LASNHERAVELYYYLKGGRVDYGAAH 127 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SSCHHHHHHHHHHHHHCEEEECCHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCC---CCCCccchHHhhhhhhhccccccccc
Confidence 456799999965431 123343 47888899999999999999 444321100 00000
Q ss_pred ------ccchhhHHHHHHHHHHcCCCC-CCeEEEEEcChhHHHHHHHHhh--------------------------CCCc
Q 004141 594 ------SQDVNDVLTAIDHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQ--------------------------APDK 640 (771)
Q Consensus 594 ------~~~~~D~~~~i~~l~~~~~~d-~~ri~l~G~S~GG~~a~~~a~~--------------------------~p~~ 640 (771)
....+|+.+.++ . .. .+++.|+||||||.++..++.. +|++
T Consensus 128 ~~~~~~~~~a~dl~~ll~----~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~ 201 (431)
T 2hih_A 128 SEKYGHERYGKTYEGVLK----D--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNM 201 (431)
T ss_dssp HHHHTCCSEEEEECCSCT----T--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSC
T ss_pred cccCCHHHHHHHHHHHHH----H--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccc
Confidence 000111111111 1 12 3789999999999999998765 6889
Q ss_pred eeEEEecCCcc
Q 004141 641 FVAAAARNPLC 651 (771)
Q Consensus 641 ~~~~v~~~p~~ 651 (771)
++.+|++++..
T Consensus 202 V~slv~i~tP~ 212 (431)
T 2hih_A 202 VTSITTIATPH 212 (431)
T ss_dssp EEEEEEESCCT
T ss_pred eeEEEEECCCC
Confidence 99999888754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.37 E-value=6.3e-05 Score=77.00 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=104.6
Q ss_pred ceEEEEEccCCceeec-cCCCC---CCccceEEEecCCCCCccEEEEEeecCcceeeeee-eeccCCceeEEEecccccc
Q 004141 218 PSLFVININSGEVQAV-KGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK-YCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l-~~~~~---~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~ 292 (771)
..|+++|.+ ++.+.+ ..... ...+..++++|||+ |++...........+. ........||+++.
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-----l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 160 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT----- 160 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-----EEEEecCcccccccccccccCCCCeEEEECC-----
Confidence 368899988 776654 21111 12467889999986 7666532100000000 00011247888886
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeec----CCCCEEEEEecCCCCCCCCccccccceeeecC-CCCCCCCccc
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFS----PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEK 367 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~S----pDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~-~~~~~~~~~~ 367 (771)
+ ++.+.+..........+|+ |||+.|++..... ..|+++|++ ++....
T Consensus 161 ------------~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~----------~~i~~~~~~~~g~~~~---- 213 (314)
T 1pjx_A 161 ------------D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT----------KKLWSYDIKGPAKIEN---- 213 (314)
T ss_dssp ------------T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT----------TEEEEEEEEETTEEEE----
T ss_pred ------------C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC----------CeEEEEECCCCCcccc----
Confidence 4 5444443333345677899 9998877665432 468888875 222100
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcE-EEecCCCCCceeeEEeecCCE
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~-~~l~~~~~~~~~~~~s~dg~~ 446 (771)
..+...+ .. ..+ ..+..+++++||+ |+++... ...|+++|.++++. ..+...........++++++.
T Consensus 214 -~~~~~~~--~~-~~~-----~~p~~i~~d~~G~-l~v~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~ 281 (314)
T 1pjx_A 214 -KKVWGHI--PG-THE-----GGADGMDFDEDNN-LLVANWG--SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKT 281 (314)
T ss_dssp -EEEEEEC--CC-CSS-----CEEEEEEEBTTCC-EEEEEET--TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSE
T ss_pred -ceEEEEC--CC-CCC-----CCCCceEECCCCC-EEEEEcC--CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCE
Confidence 0000000 00 000 0123567888986 5555432 23688889886654 334333233455667889887
Q ss_pred EEEEEeCCCCCCeEEEEEec
Q 004141 447 IIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 447 l~~~~~~~~~p~~l~~~~~~ 466 (771)
|++..... ..|+++++.
T Consensus 282 l~v~~~~~---~~l~~~~~~ 298 (314)
T 1pjx_A 282 IFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEEEETTT---TEEEEEECS
T ss_pred EEEEeCCC---CeEEEEeCC
Confidence 77765432 467777754
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-05 Score=76.89 Aligned_cols=181 Identities=17% Similarity=0.123 Sum_probs=107.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.++|++++++..-...+. ......++++|+. |+...|. ...++++|.
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~----lyv~t~~--------------~~~v~viD~--------- 93 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEK----LYQVVWL--------------KNIGFIYDR--------- 93 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEETT--------------CSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCE----EEEEEec--------------CCEEEEEEC---------
Confidence 4789999999998766521222 2233345566776 7777643 237999997
Q ss_pred hhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 297 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.+ ..++... ......+++||++|+ .++. ...|+++|..+.+... .+
T Consensus 94 --------~t~~v~~~i~~g--~~~g~glt~Dg~~l~-vs~g----------s~~l~viD~~t~~v~~----------~I 142 (266)
T 2iwa_A 94 --------RTLSNIKNFTHQ--MKDGWGLATDGKILY-GSDG----------TSILYEIDPHTFKLIK----------KH 142 (266)
T ss_dssp --------TTTEEEEEEECC--SSSCCEEEECSSSEE-EECS----------SSEEEEECTTTCCEEE----------EE
T ss_pred --------CCCcEEEEEECC--CCCeEEEEECCCEEE-EECC----------CCeEEEEECCCCcEEE----------EE
Confidence 5544 3344322 122345889999876 4542 2579999987755311 11
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeeEEe
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 441 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s 441 (771)
..... ..| ...+..+.|. || +||... + ....|.+||++++++.....-. .......++
T Consensus 143 ~Vg~~-~~p---~~~~nele~~-dg-~lyvn~-~-~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 143 NVKYN-GHR---VIRLNELEYI-NG-EVWANI-W-QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ECEET-TEE---CCCEEEEEEE-TT-EEEEEE-T-TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred EECCC-Ccc---cccceeEEEE-CC-EEEEec-C-CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 11100 000 0012344566 66 565443 2 3458999999999876443221 123567899
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++++.++++.... +.++.+++...
T Consensus 215 ~~~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCCCEEEEECCCC---CeEEEEEEecc
Confidence 9999998877544 66888887643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-06 Score=89.33 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=69.0
Q ss_pred ccceEEEeCC-----CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceee-c-CCCCeEE
Q 004141 99 TGASAVVPSP-----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISW-N-SDETLIA 168 (771)
Q Consensus 99 ~~~~~~~~SP-----dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~w-S-pDg~~la 168 (771)
+..-+|..|. ||+++ |+.+. .+..+-+|+ +..+..+++.++. +.| ++.+ + ||+++|+
T Consensus 85 gd~hh~~~s~t~g~~DG~~l-fVnd~--~~~rVavIdl~t~~~~~ii~ip~g~~ph----------g~~~~~~p~~~~v~ 151 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFL-FMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIH----------GLRPQKWPRSNYVF 151 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEE-EEEET--TTTEEEEEETTTTEEEEEEECSSCCSEE----------EEEECCSSBCSEEE
T ss_pred CCCCccccCCCCCCcCCCEE-EEEcC--CCCEEEEEECCCceEeeEEeCCCCCCCc----------ceeeeecCCCcEEE
Confidence 4455688888 99988 55332 456788888 6667777777653 333 6676 6 9999986
Q ss_pred EEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEe
Q 004141 169 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 248 (771)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~ws 248 (771)
...+...+-.+ . +..++.++ .....+-++|.++.++..- .+-.........|
T Consensus 152 ~~~~~~~p~~~--------d-----------g~~l~~~~-------~~~~~vtvID~~t~~v~~q--I~Vgg~pd~~~~s 203 (595)
T 1fwx_A 152 CNGEDETPLVN--------D-----------GTNMEDVA-------NYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDAD 203 (595)
T ss_dssp EEECSCEESSC--------S-----------SSSTTCGG-------GEEEEEEEEETTTTEEEEE--EEESSCCCCEEEC
T ss_pred EecccccccCC--------C-----------Cccccccc-------ccCceEEEEECCCCeEEEE--EEeCCCccceEEC
Confidence 55443221100 0 01111111 1346889999998876443 2222245678899
Q ss_pred cCCCC
Q 004141 249 PLNEG 253 (771)
Q Consensus 249 pDg~~ 253 (771)
|||++
T Consensus 204 pdGk~ 208 (595)
T 1fwx_A 204 YEGKW 208 (595)
T ss_dssp SSSSE
T ss_pred CCCCE
Confidence 99995
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.8e-05 Score=75.87 Aligned_cols=229 Identities=9% Similarity=-0.028 Sum_probs=134.1
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCC
Q 004141 112 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 190 (771)
Q Consensus 112 ~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 190 (771)
+|+|.... .|..++ ++.+...++...... .++.|++++..|+++..
T Consensus 3 ~ll~~~~~-----~I~~i~~~~~~~~~~~~~~~~p----------~g~~~d~~~~~ly~~D~------------------ 49 (316)
T 1ijq_A 3 YLFFTNRH-----EVRKMTLDRSEYTSLIPNLRNV----------VALDTEVASNRIYWSDL------------------ 49 (316)
T ss_dssp EEEEECBS-----SEEEEETTSCCCEEEECSCSSE----------EEEEEETTTTEEEEEET------------------
T ss_pred EEEEECCC-----eEEEEECCCcceEehhcCCCce----------EEEEEEeCCCEEEEEEC------------------
Confidence 45555333 377777 444444444322222 48899999888877632
Q ss_pred CCccCCCCCCcccccCCcCcccCCccCceEEEEEccC----CceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecC
Q 004141 191 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS----GEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 191 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~----~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
....|+++++++ .....+ ... -..+..+++.+.++. |+++..
T Consensus 50 -------------------------~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~----ly~~d~-- 96 (316)
T 1ijq_A 50 -------------------------SQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS-- 96 (316)
T ss_dssp -------------------------TTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTE----EEEEET--
T ss_pred -------------------------CCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCe----EEEEEC--
Confidence 236889999886 333333 222 234567888887776 776541
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCC
Q 004141 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGA 344 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~ 344 (771)
....|.++++ ++...+.+.. ........++.|++..|+|.....
T Consensus 97 ------------~~~~I~~~~~-----------------~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------ 141 (316)
T 1ijq_A 97 ------------VLGTVSVADT-----------------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------ 141 (316)
T ss_dssp ------------TTTEEEEEET-----------------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS------
T ss_pred ------------CCCEEEEEeC-----------------CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC------
Confidence 2237889997 5554444433 334567788999989888876431
Q ss_pred ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 345 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 345 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
..+|+++++++...+.+... .-. ....++|++++++||++.. ....|+++++++..
T Consensus 142 ---~~~I~~~~~dG~~~~~~~~~------------~~~-------~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 142 ---PAKIKKGGLNGVDIYSLVTE------------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGN 197 (316)
T ss_dssp ---SCEEEEEETTSCCEEEEECS------------SCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCS
T ss_pred ---CCeEEEEcCCCCCeEEEEEC------------CCC-------CceEEEEeccCCEEEEEEC--CCCeEEEEecCCCc
Confidence 24699998765332111000 001 1346789999888988754 34578999998766
Q ss_pred EEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 425 LLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 425 ~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.+.+.... ....-..++.+++.+|++.. ...+|++++..++
T Consensus 198 ~~~~~~~~~~~~~P~giav~~~~ly~~d~---~~~~V~~~~~~~g 239 (316)
T 1ijq_A 198 RKTILEDEKRLAHPFSLAVFEDKVFWTDI---INEAIFSANRLTG 239 (316)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEET---TTTEEEEEETTTC
T ss_pred eEEEeecCCccCCcEEEEEECCEEEEEEC---CCCeEEEEeCCCC
Confidence 66554321 11112244556788877663 3356777775433
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.4e-06 Score=89.30 Aligned_cols=103 Identities=15% Similarity=0.174 Sum_probs=65.0
Q ss_pred CCcEEEEEcCCCCCCCC-----Ccch----HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHH
Q 004141 536 CDPLIVVLHGGPHSVSL-----SSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 606 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~-----~~~~----~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~ 606 (771)
..+.||++||..+.... ..|. ..++.|+++||.|+++|++| +|.+... ..++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g---~G~s~~~----------a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWDR----------ACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SBCHHHH----------HHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCC---CCCcccc----------HHHHHHHHHh
Confidence 34569999996554211 1233 34588889999999999998 5443210 1122222221
Q ss_pred --------HHHc---------------CCCCCCeEEEEEcChhHHHHHHHHhh-------------------CC------
Q 004141 607 --------VIDM---------------GLANPSKVTVVGGSHGGFLTTHLIGQ-------------------AP------ 638 (771)
Q Consensus 607 --------l~~~---------------~~~d~~ri~l~G~S~GG~~a~~~a~~-------------------~p------ 638 (771)
+.+. .....+++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1000 00235789999999999999999872 35
Q ss_pred CceeEEEecCCcc
Q 004141 639 DKFVAAAARNPLC 651 (771)
Q Consensus 639 ~~~~~~v~~~p~~ 651 (771)
++++.+|++++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 6889998887643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00012 Score=77.65 Aligned_cols=180 Identities=11% Similarity=0.002 Sum_probs=111.0
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++++++..+.+. ...-.....+++.+.+.. |+++-. ....|+++++
T Consensus 138 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----lY~~d~--------------~~~~I~~~~~---------- 188 (386)
T 3v65_B 138 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 188 (386)
T ss_dssp TEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTE----EEEEET--------------TTTEEEECBT----------
T ss_pred CcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCe----EEEEcC--------------CCCeEEEEeC----------
Confidence 68999999988766652 222235567888888776 777642 2237888887
Q ss_pred hhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 298 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++...+.+. .........++.|++..|+|..... ..+|+++++++...+.+...
T Consensus 189 -------dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~--------- 243 (386)
T 3v65_B 189 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADT--------- 243 (386)
T ss_dssp -------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS---------
T ss_pred -------CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---------CCEEEEEeCCCCCcEEEEEC---------
Confidence 554444443 3334567789999999998876432 25799999876443222110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
.-. ....++|++++++||++-. ....|++++++++..+.+..... ..-..++.+++.||++.. .
T Consensus 244 ---~~~-------~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~-~~P~giav~~~~ly~td~---~ 307 (386)
T 3v65_B 244 ---HLF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTDW---H 307 (386)
T ss_dssp ---SCS-------CEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSC-SSEEEEEEETTEEEEEET---T
T ss_pred ---CCC-------CeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCC-CCceEEEEECCEEEEeeC---C
Confidence 000 1346789988888988754 34579999987766555543322 112234446777777653 3
Q ss_pred CCeEEEEEecc
Q 004141 457 VPQVKYGYFVD 467 (771)
Q Consensus 457 p~~l~~~~~~~ 467 (771)
...|.+++..+
T Consensus 308 ~~~V~~~~~~~ 318 (386)
T 3v65_B 308 TKSINSANKFT 318 (386)
T ss_dssp TTEEEEEETTT
T ss_pred CCeEEEEECCC
Confidence 35677766333
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=71.96 Aligned_cols=115 Identities=11% Similarity=0.037 Sum_probs=63.1
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....+++||+..|+..... ..+|.+++..+++... .+...... ..+..++++|
T Consensus 198 p~gia~d~~~g~l~v~d~~----------~~~I~~~~~~~G~~~~----------~~~~~~~~-------~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE----------NGRIQCFKTDTKEFVR----------EIKHASFG-------RNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTTTEEEEEETT----------TTEEEEEETTTCCEEE----------EECCTTTT-------TCEEEEEEET
T ss_pred CcEEEEECCCCEEEEEECC----------CCEEEEEECCCCcEEE----------EEeccccC-------CCcceeeecC
Confidence 5678999997767665543 2568999987554311 11000000 1123455677
Q ss_pred CCCEEEEEee-----eCCeeEEEEEECCCCcEEEecC----CCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 399 DGCTMLLSSI-----WGSSQVIISVNVSSGELLRITP----AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 399 Dg~~l~~~~~-----~~~~~~l~~~d~~tg~~~~l~~----~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
| .++.... ......++.++..+|++..... .........++++| .|+++.... .+|.++++.
T Consensus 251 -g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~---~~I~~~~~~ 321 (329)
T 3fvz_A 251 -G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHT---NTVWKFTLT 321 (329)
T ss_dssp -T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSS---CCEEEEEEE
T ss_pred -C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCC---CEEEEEeCC
Confidence 3 2322221 1223468888988888776642 11234456778888 666655433 357776654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.5e-05 Score=80.42 Aligned_cols=83 Identities=8% Similarity=-0.045 Sum_probs=50.8
Q ss_pred eeecCCCCEEEEEec-C-CCCCCCCccccccceeeecCCCCCCC-CccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 322 PRFSPDGKFLVFLSA-K-SSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 322 p~~SpDG~~l~f~~~-~-~~~~~g~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
..++|||++|++... . ... .+ ....+.++|+.+.+... +..+. ....+.|++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~-~~---~~~~~~ViD~~t~~vv~~i~vg~---------------------~p~gi~~s~ 323 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSC-LA---AAENTSSVTASVGQTSGPISNGH---------------------DSDAIIAAQ 323 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCT-TS---CEEEEEEEESSSCCEEECCEEEE---------------------EECEEEECC
T ss_pred eEEcCCCCEEEEEeccccCcc-cc---cCCCEEEEECCCCeEEEEEECCC---------------------CcceEEECC
Confidence 579999999876543 1 100 00 01234599998866421 11111 134678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
||++++++... +...+..||+.++++..-..
T Consensus 324 Dg~~l~va~~~-~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 324 DGASDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSSCEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred CCCEEEEEccC-CCCeEEEEECCCCcEEEEEE
Confidence 99988777652 23568888999998775543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00019 Score=74.86 Aligned_cols=177 Identities=11% Similarity=0.005 Sum_probs=109.1
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++++++..+.+. ...-.....+++.+.+.. |+++.. ....|+++++
T Consensus 95 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~---------- 145 (349)
T 3v64_C 95 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 145 (349)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CceEEEecCCCCceEEE-eCCCCCccEEEEecCCCe----EEEEcC--------------CCCeEEEEcC----------
Confidence 68999999988766652 122234567888887776 777642 2237999997
Q ss_pred hhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 298 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++...+.+. .........++.|++..|+|..... ..+|+++++++...+.+....
T Consensus 146 -------dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~~-------- 201 (349)
T 3v64_C 146 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADTH-------- 201 (349)
T ss_dssp -------TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEESCCSS--------
T ss_pred -------CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---------CCEEEEEeCCCCCcEEEEECC--------
Confidence 555444443 3334567789999999898886432 257999998765432221110
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
.. ....+++++++++||++-. ....|+++++++...+.+..... ..-..++.+++.||++-..
T Consensus 202 ----~~-------~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~-~~P~giav~~~~ly~td~~--- 264 (349)
T 3v64_C 202 ----LF-------WPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTDWH--- 264 (349)
T ss_dssp ----CS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSC-SSEEEEEEETTEEEEEETT---
T ss_pred ----CC-------CcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCC-CCceEEEEECCEEEEecCC---
Confidence 01 1346789998888988754 34579999998766555543221 1112333466777766432
Q ss_pred CCeEEEEE
Q 004141 457 VPQVKYGY 464 (771)
Q Consensus 457 p~~l~~~~ 464 (771)
...|.+++
T Consensus 265 ~~~V~~~~ 272 (349)
T 3v64_C 265 TKSINSAN 272 (349)
T ss_dssp TTEEEEEE
T ss_pred CCeEEEEE
Confidence 34566665
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00012 Score=73.15 Aligned_cols=175 Identities=5% Similarity=-0.048 Sum_probs=96.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.+++....+. ......+..++++|||+ |++... ....|++++.
T Consensus 87 ~~i~~~d~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 136 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA---------- 136 (270)
T ss_dssp TEEEEECTTCSCCEECC-CCSCSSEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEeCCCceEeeee-cCCcCCCcceEECCCCC-----EEEEEC--------------CCCEEEEEEC----------
Confidence 57888998877665552 12223567889999886 665531 1236888875
Q ss_pred hhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 298 ELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.+........ ........+++|||+ |++.... ...|+++|..++.......
T Consensus 137 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~---------- 188 (270)
T 1rwi_B 137 -------GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPF---------- 188 (270)
T ss_dssp -------TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCC----------
T ss_pred -------CCceeEeeccccCCCceeEEEeCCCC-EEEEECC----------CCEEEEEecCCCceEeecc----------
Confidence 3333222222 223467789999998 5544432 2468999876644211100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
..+ ..+..+++.+|| .|+++... ...|++++.++.....+.... .......++++|+ |+++...
T Consensus 189 ----~~~-----~~p~~i~~d~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~-- 253 (270)
T 1rwi_B 189 ----TDI-----TAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRG-- 253 (270)
T ss_dssp ----SSC-----CSEEEEEECTTC-CEEEEETT--TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGG--
T ss_pred ----cCC-----CCceEEEECCCC-CEEEEECC--CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECC--
Confidence 000 123456788888 46665432 335788888766555443222 2234455666765 5544432
Q ss_pred CCCeEEEEEec
Q 004141 456 DVPQVKYGYFV 466 (771)
Q Consensus 456 ~p~~l~~~~~~ 466 (771)
-.+|.++++.
T Consensus 254 -~~~v~~~~~~ 263 (270)
T 1rwi_B 254 -NDRVVKLTSL 263 (270)
T ss_dssp -GTEEEEECCC
T ss_pred -CCEEEEEcCC
Confidence 2345655543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5e-05 Score=74.86 Aligned_cols=204 Identities=9% Similarity=0.016 Sum_probs=117.7
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
....|+||| + +|++....+...+..++ ..++..+.+.++...+ ...++++|++|+....
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f----------geGi~~~g~~lyv~t~-------- 83 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF----------GEGLTLLNEKLYQVVW-------- 83 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEET--------
T ss_pred ccEEEeCCC-e-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----------eEEEEEeCCEEEEEEe--------
Confidence 567899996 4 46665433567788888 6777777666644332 3345556777766533
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....++++|.++.++..- ++.. .......++||++ |+.
T Consensus 84 -----------------------------------~~~~v~viD~~t~~v~~~--i~~g-~~~g~glt~Dg~~----l~v 121 (266)
T 2iwa_A 84 -----------------------------------LKNIGFIYDRRTLSNIKN--FTHQ-MKDGWGLATDGKI----LYG 121 (266)
T ss_dssp -----------------------------------TCSEEEEEETTTTEEEEE--EECC-SSSCCEEEECSSS----EEE
T ss_pred -----------------------------------cCCEEEEEECCCCcEEEE--EECC-CCCeEEEEECCCE----EEE
Confidence 236899999998876543 2221 1234567889997 764
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC--c---cccceeecCCCCEEEEE
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI--S---SAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~--~---~~~~p~~SpDG~~l~f~ 334 (771)
++ ....|+.+|. ++.+ ...+.-.. . ......|. || +| |.
T Consensus 122 -s~--------------gs~~l~viD~-----------------~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l-yv 166 (266)
T 2iwa_A 122 -SD--------------GTSILYEIDP-----------------HTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV-WA 166 (266)
T ss_dssp -EC--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TT-EE-EE
T ss_pred -EC--------------CCCeEEEEEC-----------------CCCcEEEEEEECCCCcccccceeEEEE-CC-EE-EE
Confidence 43 2237999997 5544 33333211 1 13345677 77 44 44
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccccc-C--CCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-E--GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
.... ...|.++|.++++... .+++-... . ....+ ....+..++|+||++++|++. ..
T Consensus 167 n~~~---------~~~V~vID~~tg~V~~-------~I~~~g~~~~~~~~~~~--~~~v~nGIa~~~~~~~lfVTg--k~ 226 (266)
T 2iwa_A 167 NIWQ---------TDCIARISAKDGTLLG-------WILLPNLRKKLIDEGFR--DIDVLNGIAWDQENKRIFVTG--KL 226 (266)
T ss_dssp EETT---------SSEEEEEETTTCCEEE-------EEECHHHHHHHHHTTCT--TCCCEEEEEEETTTTEEEEEE--TT
T ss_pred ecCC---------CCeEEEEECCCCcEEE-------EEECCCccccccccccc--ccCceEEEEEcCCCCEEEEEC--CC
Confidence 4432 3579999998877521 11110000 0 00000 001235678999999887764 45
Q ss_pred eeEEEEEECCC
Q 004141 412 SQVIISVNVSS 422 (771)
Q Consensus 412 ~~~l~~~d~~t 422 (771)
+..||.|++..
T Consensus 227 ~~~v~~i~l~~ 237 (266)
T 2iwa_A 227 WPKLFEIKLHL 237 (266)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEec
Confidence 56788888654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00021 Score=74.36 Aligned_cols=111 Identities=11% Similarity=-0.008 Sum_probs=58.2
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
....+|||||+.|++..... .+||.++........+.... +...+...... .....+++++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~----------~~l~~~~~~~~~~~~~~~~~--~~~~~~~~g~~-------g~pdgia~d~ 257 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS----------TSMYRIKSADLSNLQLTDAE--LGSKIERYSEK-------PICDGISIDK 257 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC----------SEEEEEEHHHHTCTTCCHHH--HHTTCEEEEEC-------CSCSCEEECT
T ss_pred cceeEeccCCCEEEEEeCCC----------CeEEEEEHHHhcCCCCChhh--hhcceEecccC-------CCCceEEECC
Confidence 45689999999998877542 46888874311100011000 00000000000 0234678999
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEe
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--~~~~~~~~s~dg~~l~~~~~ 452 (771)
||. |+++... ...|+++|.++|++..+.... .......+++++. |+++.+
T Consensus 258 ~G~-l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~ 309 (343)
T 2qe8_A 258 DHN-IYVGDLA--HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCN 309 (343)
T ss_dssp TCC-EEEEEGG--GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEEC
T ss_pred CCC-EEEEccC--CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeC
Confidence 986 6555432 346888898667776665332 1233456666654 555544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.5e-05 Score=86.78 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=58.2
Q ss_pred ceEEEEEccC--Cce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 218 PSLFVININS--GEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 218 ~~l~v~d~~~--~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
..+-|+|..+ +++ ... ++.......+.+||||++ ++... . ...++.++|+....
T Consensus 254 ~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~----v~V~~-~-------------~s~~VsVid~~~~~--- 310 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKH----LCVAG-K-------------LSPTVTVLDVTRFD--- 310 (595)
T ss_dssp TTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSE----EEEEC-T-------------TSSBEEEEEGGGHH---
T ss_pred CcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCE----EEEeC-C-------------CCCeEEEEECcccc---
Confidence 4589999987 443 323 333446678899999996 55443 2 22378899972100
Q ss_pred hhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 295 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 295 ~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.+ +......... ...+ .-.......+|+||| . +|++..- .+++.+||+++
T Consensus 311 -~~-~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~-aY~t~~l---------dsqV~kwdi~~ 361 (595)
T 1fwx_A 311 -AV-FYENADPRSAVVAEP-ELGLGPLHTAFDGRG-N-AYTSLFL---------DSQVVKWNIED 361 (595)
T ss_dssp -HH-HHSCCCGGGGEEECC-BCCSCEEEEEECTTS-E-EEEEETT---------TTEEEEEEHHH
T ss_pred -cc-cccccCcccceEEEc-CCCCCcceEEECCCC-e-EEEEEec---------CCcEEEEEhhH
Confidence 00 0000000001 1122 122346778999999 4 6777654 36788888765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00029 Score=71.99 Aligned_cols=228 Identities=13% Similarity=0.109 Sum_probs=120.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...++|+|+|+ | |+.+. ....++.++..+............ .+++++|||+ | |+++...
T Consensus 34 pegia~~~~g~-l-yv~d~--~~~~I~~~d~~g~~~~~~~~~~~p----------~gia~~~dG~-l-~vad~~~----- 92 (306)
T 2p4o_A 34 LENLASAPDGT-I-FVTNH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-L-VATGWNA----- 92 (306)
T ss_dssp EEEEEECTTSC-E-EEEET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-E-EEEEECT-----
T ss_pred cceEEECCCCC-E-EEEeC--CCCeEEEECCCCceEEEEeCCCCc----------eeEEEcCCCc-E-EEEeccC-----
Confidence 45789999997 5 44443 234578777445444444443333 4889999998 4 4433210
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....|+.+|..+++++.+...+.......++..+++ . ++
T Consensus 93 -----------------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~-~----~~- 131 (306)
T 2p4o_A 93 -----------------------------------DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-Q----YL- 131 (306)
T ss_dssp -----------------------------------TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-E----EE-
T ss_pred -----------------------------------CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC-c----EE-
Confidence 123688888888887665212222222334433433 2 33
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC--cce---------ecCCCCccccceeecCCCC
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVV---------NLTESISSAFFPRFSPDGK 329 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~---------~lt~~~~~~~~p~~SpDG~ 329 (771)
++.. ....||.+|. .++ +.. ............ ||||+
T Consensus 132 v~d~-------------~~g~i~~~d~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~ 179 (306)
T 2p4o_A 132 TADS-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGN 179 (306)
T ss_dssp EEET-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETT
T ss_pred EEEC-------------CCCeEEEEeC-----------------CCCcEeEEEECCccccccccCCCCcCCCc--CcCCC
Confidence 3321 2347888886 322 111 000111112222 89999
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~ 409 (771)
+|++.... ..+|+++++++.+. +.. ...... + .....+++.+||+ |+++..
T Consensus 180 ~lyv~d~~----------~~~I~~~~~~~~g~--~~~-~~~~~~---------~-----~~P~gi~vd~dG~-l~va~~- 230 (306)
T 2p4o_A 180 FLYVSNTE----------KMLLLRIPVDSTDK--PGE-PEIFVE---------Q-----TNIDDFAFDVEGN-LYGATH- 230 (306)
T ss_dssp EEEEEETT----------TTEEEEEEBCTTSC--BCC-CEEEEE---------S-----CCCSSEEEBTTCC-EEEECB-
T ss_pred EEEEEeCC----------CCEEEEEEeCCCCC--CCc-cEEEec---------c-----CCCCCeEECCCCC-EEEEeC-
Confidence 88776644 25799999875221 110 000110 0 1245678899996 555433
Q ss_pred CCeeEEEEEECCCCcEEEe---cCCCCCceeeEEe---ecCCEEEEEEeC
Q 004141 410 GSSQVIISVNVSSGELLRI---TPAESNFSWSLLT---LDGDNIIAVSSS 453 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l---~~~~~~~~~~~~s---~dg~~l~~~~~~ 453 (771)
....|.+++.+ |++..+ ...........|. +|++.||++...
T Consensus 231 -~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 -IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -CCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 23457788875 666543 2221223445666 677888777654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00053 Score=71.40 Aligned_cols=162 Identities=9% Similarity=0.057 Sum_probs=105.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|.|.+..|.++-. ....|+.+. +++....+....... ..++++.+.+..|++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~---~~~~I~r~~~~g~~~~~~~~~~~~~---------p~glavd~~~g~ly~~d~----- 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDV---TLDRILRANLNGSNVEEVVSTGLES---------PGGLAVDWVHDKLYWTDS----- 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEEET-----
T ss_pred CceEEEEEeccccEEEEEec---cCCceEEEecCCCCceEEEeCCCCC---------ccEEEEecCCCeEEEEcC-----
Confidence 34677899998888866532 234677777 444444444322111 147888888888877522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|+++++++...+.+. ...-..+..+++.|++..
T Consensus 136 --------------------------------------~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~---- 172 (349)
T 3v64_C 136 --------------------------------------GTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGT---- 172 (349)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTE----
T ss_pred --------------------------------------CCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCe----
Confidence 2358999999887666552 122235678899998876
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+++.+.. ...|+++++ ++...+.+.. ........+|+|++++|+|...
T Consensus 173 ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 173 IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEEECSS-------------SCEEEEEET-----------------TSCSCEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 77765321 247999998 5555555533 3334678899999999998875
Q ss_pred CCCCCCCCccccccceeeecCCCC
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.. ..|+++|+++..
T Consensus 223 ~~----------~~I~~~~~dG~~ 236 (349)
T 3v64_C 223 KH----------HVIERANLDGSH 236 (349)
T ss_dssp TT----------TEEEEEETTSCS
T ss_pred CC----------CEEEEEeCCCCc
Confidence 42 579999987643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00027 Score=75.21 Aligned_cols=182 Identities=8% Similarity=-0.064 Sum_probs=109.8
Q ss_pred ceEEEEEccCC----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+.+++++. ....+. ...-..+..+++.+.++. |+++-. ....|+++++
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~----lY~~d~--------------~~~~I~~~~~------ 188 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 188 (400)
T ss_dssp TEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTE----EEEEET--------------TTTEEEEECT------
T ss_pred CeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCc----eEEEEC--------------CCCeEEEEeC------
Confidence 57888888762 333331 122234567788876776 776642 2237899998
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+.+.. ........++.|.+..|+|..... ...|+++++++...+.+....
T Consensus 189 -----------~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~~~~~~---- 244 (400)
T 3p5b_L 189 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 244 (400)
T ss_dssp -----------TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---------SCCEEEEETTSCSCEEEECSS----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---------CCEEEEEeCCCCccEEEEECC----
Confidence 5555544443 333467789999988898876432 246999998765432221100
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~~ 451 (771)
-. .+..+++++++++||++-. ....|++++++++..+.+..... ...-..++.+++.||++.
T Consensus 245 --------l~-------~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 245 --------IQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred --------CC-------ceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 01 1346788888888988743 34579999998777666654322 112235666888888776
Q ss_pred eCCCCCCeEEEEEeccc
Q 004141 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 ~~~~~p~~l~~~~~~~~ 468 (771)
. ....|++++..++
T Consensus 308 ~---~~~~V~~~~~~~G 321 (400)
T 3p5b_L 308 I---INEAIFSANRLTG 321 (400)
T ss_dssp S---SSCSEEEEESSSC
T ss_pred C---CCCeEEEEEcCCC
Confidence 3 3345777764444
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00024 Score=75.16 Aligned_cols=161 Identities=9% Similarity=0.073 Sum_probs=104.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....++|.+.+.+|.++- . ....|+.+. +++....++....... .++++.+.+..|++...
T Consensus 116 ~~~~gl~~d~~~~~ly~~D-~--~~~~I~r~~~~g~~~~~~~~~~~~~p---------~glavd~~~g~lY~~d~----- 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSD-V--TLDRILRANLNGSNVEEVVSTGLESP---------GGLAVDWVHDKLYWTDS----- 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEEE-T--TTTEEEEEETTSCCEEEEECSSCSCC---------CCEEEETTTTEEEEEET-----
T ss_pred CccEEEEEecCCCeEEEEe-C--CCCcEEEEecCCCCcEEEEeCCCCCc---------cEEEEEeCCCeEEEEcC-----
Confidence 3467789999888886653 2 234678777 4444344433221111 47888888887877522
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCcc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~ 256 (771)
....|+++++++...+.+ .... ..+..++..|++..
T Consensus 179 --------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~P~giavdp~~g~--- 215 (386)
T 3v65_B 179 --------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT--- 215 (386)
T ss_dssp --------------------------------------TTTEEEECBTTSCSCEEE--ECSSCSCEEEEEEETTTTE---
T ss_pred --------------------------------------CCCeEEEEeCCCCceEEe--ecCCCCCCcEEEEEcCCCe---
Confidence 235788888887765555 2322 35678899998886
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+++-+.. ...|+++++ ++...+.+. .........+|+|++++|+|..
T Consensus 216 -ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD 264 (386)
T 3v65_B 216 -IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD 264 (386)
T ss_dssp -EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE
T ss_pred -EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE
Confidence 77765321 237999998 555444443 3333467899999999999887
Q ss_pred cCCCCCCCCccccccceeeecCCCC
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
... ..|+++|+++..
T Consensus 265 ~~~----------~~I~~~d~dG~~ 279 (386)
T 3v65_B 265 AKH----------HVIERANLDGSH 279 (386)
T ss_dssp TTT----------TEEEEECTTSCS
T ss_pred CCC----------CEEEEEeCCCCe
Confidence 542 579999987643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00035 Score=74.53 Aligned_cols=158 Identities=12% Similarity=0.191 Sum_probs=89.8
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
++|+|+|+.|++. +.. +...++.+. .++...+.. ...... .....+++++|++..|++. .
T Consensus 176 ia~~~~g~~l~~~-d~~-~~~~I~~~d~~~~~~~~~~g~~~~~~------~~~p~~iav~p~~g~lyv~-d--------- 237 (409)
T 3hrp_A 176 PAVTKDKQRVYSI-GWE-GTHTVYVYMKASGWAPTRIGQLGSTF------SGKIGAVALDETEEWLYFV-D--------- 237 (409)
T ss_dssp CEECTTSSEEEEE-BSS-TTCEEEEEEGGGTTCEEEEEECCTTS------CSCCCBCEECTTSSEEEEE-C---------
T ss_pred eeEecCCCcEEEE-ecC-CCceEEEEEcCCCceeEEeeeccchh------cCCcEEEEEeCCCCeEEEE-E---------
Confidence 8999999987554 332 223688877 433322222 111100 0122588999976667663 2
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC--CCCCC--ccc-eEEEecCCCCCcc
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSL--SVG-QVVWAPLNEGLHQ 256 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~--~~~~~--~~~-~~~wspDg~~~~~ 256 (771)
....|+++|++++....+.+ ..... .+. .++|+|++..
T Consensus 238 ----------------------------------~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~--- 280 (409)
T 3hrp_A 238 ----------------------------------SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN--- 280 (409)
T ss_dssp ----------------------------------TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE---
T ss_pred ----------------------------------CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE---
Confidence 12579999998887655410 11111 223 8999997765
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC---------------Cccccc
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---------------ISSAFF 321 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~---------------~~~~~~ 321 (771)
|+++. . ....|++++. ++. ...+... ......
T Consensus 281 -lyv~d-~-------------~~~~I~~~~~-----------------~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 281 -FYMSD-Q-------------NLSSVYKITP-----------------DGE-CEWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp -EEEEE-T-------------TTTEEEEECT-----------------TCC-EEEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred -EEEEe-C-------------CCCEEEEEec-----------------CCC-EEEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 66553 1 2336888876 222 2222111 123567
Q ss_pred eeecCCCCEEEEEec-CCCCCCCCccccccceeeecCCCC
Q 004141 322 PRFSPDGKFLVFLSA-KSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 322 p~~SpDG~~l~f~~~-~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+++|||+ |++... . ..+|+++++.++.
T Consensus 328 ia~d~dG~-lyvad~~~----------~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 328 MTVDEDGN-FYIVDGFK----------GYCLRKLDILDGY 356 (409)
T ss_dssp EEECTTCC-EEEEETTT----------TCEEEEEETTTTE
T ss_pred EEEeCCCC-EEEEeCCC----------CCEEEEEECCCCE
Confidence 88999998 665543 2 3568899876554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00051 Score=70.37 Aligned_cols=161 Identities=9% Similarity=0.014 Sum_probs=102.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcc-eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
......|.+.+..|.++ +. ....|+.+. +++.. ..+....... ..++++.+.+..|++.-.
T Consensus 36 ~~~~ld~d~~~~~lyw~-D~--~~~~I~r~~~~g~~~~~~~~~~~l~~---------p~glavd~~~g~ly~~d~----- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWS-DV--SEEAIKRTEFNKTESVQNVVVSGLLS---------PDGLACDWLGEKLYWTDS----- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEE-ET--TTTEEEEEETTSSSCCCEEEEECCSC---------CCEEEEETTTTEEEEEET-----
T ss_pred ccEEEEEEeCCCEEEEE-EC--CCCcEEEEEccCCCceEEEEcCCCCC---------ccEEEEEcCCCeEEEEEC-----
Confidence 35678899988888665 33 234677777 44322 2222221111 147888887877766521
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.++++++...+.+. ...-..+..++..|++..
T Consensus 99 --------------------------------------~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~---- 135 (318)
T 3sov_A 99 --------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF---- 135 (318)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTE----
T ss_pred --------------------------------------CCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCE----
Confidence 2368899999887666652 122235678889998776
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-CCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-t~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+++.+. ....|+++++ ++...+.+ ..........+|+|++++|+|...
T Consensus 136 ly~td~~-------------~~~~I~r~~~-----------------dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 136 MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEEecC-------------CCCEEEEEEc-----------------CCCCeEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence 7766432 1247999998 55444444 333345678899999999999875
Q ss_pred CCCCCCCCccccccceeeecCCCC
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.. ..|+++|+++..
T Consensus 186 ~~----------~~I~~~d~dG~~ 199 (318)
T 3sov_A 186 KL----------NFIHKSNLDGTN 199 (318)
T ss_dssp TT----------TEEEEEETTSCS
T ss_pred CC----------CEEEEEcCCCCc
Confidence 42 579999987644
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00027 Score=76.46 Aligned_cols=264 Identities=14% Similarity=0.120 Sum_probs=138.0
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
.++++|++|+..+..+ .+.+|+ .++..+.+. ...+. +..+.|+ ++.|+..+.+...+ .|+
T Consensus 124 ~~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~---~h~~~------v~~~~~~--~~~l~s~~~dg~i~--vwd 185 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLV---GHTGG------VWSSQMR--DNIIISGSTDRTLK--VWN 185 (445)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTCCEEEECC---CCSSC------EEEEEEE--TTEEEEEETTSCEE--EEE
T ss_pred EEEEcCCEEEEEECCC-----cEEEEECCCCcEEEEEc---CCCCC------EEEEEec--CCEEEEEeCCCeEE--EEE
Confidence 5778899998766543 455563 333222222 11111 2567776 55677766554332 232
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEe
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 262 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~ 262 (771)
............+........+.+ ...+++.....|.+||+.+++..... ......+..+.| ||+. |+..+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRR----VVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSC----EEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCE----EEEEc
Confidence 211111111111222222233332 23555666789999999988765441 223334556666 7887 77665
Q ss_pred ecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCC
Q 004141 263 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVD 341 (771)
Q Consensus 263 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~ 341 (771)
.+..|.++|+ .+++ ...+..+...+....| ||+.|+..+.+.
T Consensus 257 ---------------~dg~i~iwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~--- 299 (445)
T 2ovr_B 257 ---------------YDFMVKVWDP-----------------ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT--- 299 (445)
T ss_dssp ---------------TTSCEEEEEG-----------------GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS---
T ss_pred ---------------CCCEEEEEEC-----------------CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC---
Confidence 2347888887 4443 3455555666777777 889887776553
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
.|.+||+.+++........ .....+++++++.| ++...++.. ..+|+.
T Consensus 300 --------~i~i~d~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~l-~~~~~dg~i--~vwd~~ 347 (445)
T 2ovr_B 300 --------SIRVWDVETGNCIHTLTGH---------------------QSLTSGMELKDNIL-VSGNADSTV--KIWDIK 347 (445)
T ss_dssp --------CEEEEETTTCCEEEEECCC---------------------CSCEEEEEEETTEE-EEEETTSCE--EEEETT
T ss_pred --------eEEEEECCCCCEEEEEcCC---------------------cccEEEEEEeCCEE-EEEeCCCeE--EEEECC
Confidence 4889998876532110000 01112345567644 455555554 445777
Q ss_pred CCcEEEecCC-C-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 422 SGELLRITPA-E-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 422 tg~~~~l~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+++....... . .......++.+++.++....+ ..+.+.++.++
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d----g~v~iwd~~~~ 392 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD----GTVKLWDLKTG 392 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT----SEEEEEETTTC
T ss_pred CCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC----CeEEEEECCCC
Confidence 7775544332 1 111223444466655544322 35666665443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00077 Score=69.09 Aligned_cols=160 Identities=11% Similarity=0.123 Sum_probs=101.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC----CcceEEEecC-CcccccccCCCcccceeecCCCCeEEEEec
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ----SQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAE 172 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~-~~~~g~~~~~~~~~~~~wSpDg~~la~~~~ 172 (771)
.....+.|++++.+|+++.. ....|+.+. ++ .....++... ... .++++.+.+..|++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p----------~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEEC---CCCcEEEEECCCCCCCcccEEEEeCCCCCc----------CEEEEeecCCeEEEEEC
Confidence 34678999999988866543 234677777 33 2223333211 111 47888887877766521
Q ss_pred CCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCC-CCCccceEEEecCC
Q 004141 173 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLN 251 (771)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg 251 (771)
....|.++++++...+.+ .. .-..+..++..|++
T Consensus 97 -------------------------------------------~~~~I~~~~~~g~~~~~~--~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 97 -------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVH 131 (316)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTT
T ss_pred -------------------------------------------CCCEEEEEeCCCCceEEE--EECCCCCcceEEeCCCC
Confidence 236788999988766655 22 22356788899988
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKF 330 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~ 330 (771)
.. |+++.+. ....|+++++ ++...+.+. .........+|+|++++
T Consensus 132 g~----ly~~d~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~~~~P~gla~d~~~~~ 177 (316)
T 1ijq_A 132 GF----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGR 177 (316)
T ss_dssp TE----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CE----EEEEccC-------------CCCeEEEEcC-----------------CCCCeEEEEECCCCCceEEEEeccCCE
Confidence 76 7766421 1237999997 544444442 23344667899999999
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
|+|..... ..|+++|+++..
T Consensus 178 lY~~D~~~----------~~I~~~d~dg~~ 197 (316)
T 1ijq_A 178 LYWVDSKL----------HSISSIDVNGGN 197 (316)
T ss_dssp EEEEETTT----------TEEEEEETTSCS
T ss_pred EEEEECCC----------CeEEEEecCCCc
Confidence 99887542 579999987543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=8.9e-05 Score=80.09 Aligned_cols=185 Identities=10% Similarity=0.088 Sum_probs=103.4
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.++++||++|+.....+ .+.+| ..++......... +. +.+++| |++.|+..+.++... .|
T Consensus 137 ~~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h~---~~------v~~l~~--~~~~l~sg~~dg~i~--vw 198 (435)
T 1p22_A 137 YCLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILTGHT---GS------VLCLQY--DERVIITGSSDSTVR--VW 198 (435)
T ss_dssp EEEECCSSEEEEEESSS-----CEEEEESSSCCEEEEECCCS---SC------EEEEEC--CSSEEEEEETTSCEE--EE
T ss_pred EEEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCCC---Cc------EEEEEE--CCCEEEEEcCCCeEE--EE
Confidence 45667999998776543 34555 3333333332111 11 246666 888888877665432 23
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee----eccCCCCCCccceEEEecCCCCCccE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~----~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
+............+........|.+ +..+++.....|.+||+.+++.. .+ ......+..+.| |++.
T Consensus 199 d~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~--~~~~---- 268 (435)
T 1p22_A 199 DVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDF--DDKY---- 268 (435)
T ss_dssp ESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEE--ETTE----
T ss_pred ECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEe--cCCCCcEEEEEe--CCCE----
Confidence 3222211111111222222333432 34556666789999999887643 23 233445666666 7776
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+..+ .+..|.++|+ .+++ ...+..+...+....| +|+.|+..+.
T Consensus 269 l~s~~---------------~dg~i~vwd~-----------------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~ 314 (435)
T 1p22_A 269 IVSAS---------------GDRTIKVWNT-----------------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSS 314 (435)
T ss_dssp EEEEE---------------TTSEEEEEET-----------------TTCCEEEEEECCSSCEEEEEE--ETTEEEEEET
T ss_pred EEEEe---------------CCCeEEEEEC-----------------CcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC
Confidence 66654 3347888898 4444 3455555556666666 5777776665
Q ss_pred CCCCCCCCccccccceeeecCCCCC
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+ ..|.+||+.+++.
T Consensus 315 d-----------g~i~iwd~~~~~~ 328 (435)
T 1p22_A 315 D-----------NTIRLWDIECGAC 328 (435)
T ss_dssp T-----------SCEEEEETTTCCE
T ss_pred C-----------CeEEEEECCCCCE
Confidence 4 3589999887653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00065 Score=69.60 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=110.4
Q ss_pred ceEEEEEccCCce-eeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 218 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~-~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|++++++++.. ..+. ...-..+..+++.+.+.. |+++-. ....|+++++
T Consensus 57 ~~I~r~~~~g~~~~~~~~-~~~l~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~--------- 108 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEK----LYWTDS--------------ETNRIEVSNL--------- 108 (318)
T ss_dssp TEEEEEETTSSSCCCEEE-EECCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CcEEEEEccCCCceEEEE-cCCCCCccEEEEEcCCCe----EEEEEC--------------CCCEEEEEEC---------
Confidence 6788999887742 1220 112224567888887776 776541 2237899997
Q ss_pred hhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 297 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.+. .........++.|++..|+|..... ...|+++++++...+.+...
T Consensus 109 --------dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~-------- 163 (318)
T 3sov_A 109 --------DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------VPKIERAGMDGSSRFIIINS-------- 163 (318)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CCEEEEEEcCCCCeEEEEEC--------
Confidence 555444443 3344567788999888888876432 25699999876443221100
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
.+ .....++|++++++||++-. ....|++++++++..+.+..... ..-..++.+++.+|.+-.
T Consensus 164 ------~l-----~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~~~lywtd~--- 226 (318)
T 3sov_A 164 ------EI-----YWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSL-PHPFALTLFEDILYWTDW--- 226 (318)
T ss_dssp ------SC-----SCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCC-SCEEEEEEETTEEEEEET---
T ss_pred ------CC-----CCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCC-CCceEEEEeCCEEEEEec---
Confidence 00 01346789998888988754 44579999998766666654222 122345557788877742
Q ss_pred CCCeEEEEEeccc
Q 004141 456 DVPQVKYGYFVDK 468 (771)
Q Consensus 456 ~p~~l~~~~~~~~ 468 (771)
....|++++..++
T Consensus 227 ~~~~V~~~~~~~G 239 (318)
T 3sov_A 227 STHSILACNKYTG 239 (318)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 3456887776444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00079 Score=67.47 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCcccc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 398 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~ 398 (771)
.....+++||+.|+..... ..|+.+|.+ |+..-. +.. .. ........+
T Consensus 127 ~~~v~~~~~G~~lv~~~~~-----------~~v~~~d~~-G~~~w~----------~~~--~~--------~~~~~~~~~ 174 (276)
T 3no2_A 127 FRQINKNKKGNYLVPLFAT-----------SEVREIAPN-GQLLNS----------VKL--SG--------TPFSSAFLD 174 (276)
T ss_dssp CSCCEECTTSCEEEEETTT-----------TEEEEECTT-SCEEEE----------EEC--SS--------CCCEEEECT
T ss_pred ccCceECCCCCEEEEecCC-----------CEEEEECCC-CCEEEE----------EEC--CC--------CccceeEcC
Confidence 3445789999977644322 358888876 443110 000 00 122345678
Q ss_pred CCCEEEEEeeeCCeeEEEEEECCCCcEEE-ecCCC--C----CceeeEEeecCCEEEEEEeCCC------CCCeEEEEE
Q 004141 399 DGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAE--S----NFSWSLLTLDGDNIIAVSSSPV------DVPQVKYGY 464 (771)
Q Consensus 399 Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~-l~~~~--~----~~~~~~~s~dg~~l~~~~~~~~------~p~~l~~~~ 464 (771)
+|+.|+. ... ...|+.+|.++|++.. +.... + ........++|+.++..+.+.. ...+++-++
T Consensus 175 ~g~~~v~-~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~ 250 (276)
T 3no2_A 175 NGDCLVA-CGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEID 250 (276)
T ss_dssp TSCEEEE-CBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEEC
T ss_pred CCCEEEE-eCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEEC
Confidence 8885543 332 2369999999887653 32211 1 1222344556665554443432 244566544
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0029 Score=63.49 Aligned_cols=175 Identities=6% Similarity=-0.044 Sum_probs=95.5
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.++.....+. ......+..++++|||+ |+++.. ....|++++.
T Consensus 100 ~~i~~~d~~g~~~~~~~-~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 149 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 149 (286)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CEEEEECCCCcEEEEec-CccCCCceEEEEeCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 57888886555444442 22223567889999986 665541 2236888885
Q ss_pred hhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.....+. .........+++|||+ |++.... ...|+++|..+.....+.
T Consensus 150 -------~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~g~~~~~~~---------- 201 (286)
T 1q7f_A 150 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQIG---------- 201 (286)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEES----------
T ss_pred -------CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC----------CCEEEEEcCCCCEEEEEc----------
Confidence 433333332 2223467889999998 4444322 246889986442111110
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--CceeeEEeecCCEEEEEEeC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--~~~~~~~s~dg~~l~~~~~~ 453 (771)
. .+.+ ..+..+++++||+ |+++.... ...|.+++.++..+..+..... ......++++|+ ++++ +.
T Consensus 202 -~--~g~~-----~~p~~i~~d~~G~-l~v~~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~ 269 (286)
T 1q7f_A 202 -G--EGIT-----NYPIGVGINSNGE-ILIADNHN-NFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLA-SK 269 (286)
T ss_dssp -C--TTTS-----CSEEEEEECTTCC-EEEEECSS-SCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ET
T ss_pred -c--CCcc-----CCCcEEEECCCCC-EEEEeCCC-CEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CC
Confidence 0 0101 1234577889996 55554322 2267777876555555543322 123456778775 5555 32
Q ss_pred CCCCCeEEEEEe
Q 004141 454 PVDVPQVKYGYF 465 (771)
Q Consensus 454 ~~~p~~l~~~~~ 465 (771)
+ .++.+.+.
T Consensus 270 -~--~~v~v~~~ 278 (286)
T 1q7f_A 270 -D--YRLYIYRY 278 (286)
T ss_dssp -T--TEEEEEEC
T ss_pred -C--CeEEEEEc
Confidence 2 45666554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00019 Score=69.89 Aligned_cols=178 Identities=14% Similarity=0.190 Sum_probs=106.7
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.++|+++|++..- .+-.........+++|++ |+...|. ...++++|.
T Consensus 64 ~S~v~~vD~~Tgkv~~~--~~l~~~~FgeGit~~g~~----ly~ltw~--------------~~~v~v~D~--------- 114 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQ--IELGKRYFGEGISDWKDK----IVGLTWK--------------NGLGFVWNI--------- 114 (262)
T ss_dssp EEEEEEECTTTCCEEEE--EECCTTCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCcEEEE--EecCCccceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 36899999999987655 222223333446677887 8777653 337999998
Q ss_pred hhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 297 LELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.+. .++.-.. ....+++||+.|+ .++. ..+|+++|..+.+... .+.+.
T Consensus 115 --------~t~~~~~ti~~~~---eG~glt~dg~~L~-~SdG----------s~~i~~iDp~T~~v~~-------~I~V~ 165 (262)
T 3nol_A 115 --------RNLRQVRSFNYDG---EGWGLTHNDQYLI-MSDG----------TPVLRFLDPESLTPVR-------TITVT 165 (262)
T ss_dssp --------TTCCEEEEEECSS---CCCCEEECSSCEE-ECCS----------SSEEEEECTTTCSEEE-------EEECE
T ss_pred --------ccCcEEEEEECCC---CceEEecCCCEEE-EECC----------CCeEEEEcCCCCeEEE-------EEEec
Confidence 55543 3343221 3346678998765 4432 2569999988755311 11111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-------------CCceeeEEee
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-------------SNFSWSLLTL 442 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-------------~~~~~~~~s~ 442 (771)
.. ...+ ..+..+.|. || +|++. .+. ...|.+||+++|++....... ......++++
T Consensus 166 ~~--g~~~-----~~lNELe~~-~G-~lyan-~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 166 AH--GEEL-----PELNELEWV-DG-EIFAN-VWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp ET--TEEC-----CCEEEEEEE-TT-EEEEE-ETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred cC--Cccc-----cccceeEEE-CC-EEEEE-Ecc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 00 0001 012235676 66 46543 333 347999999999987543221 1235578899
Q ss_pred cCCEEEEEEeCCCCCCeEEEEEec
Q 004141 443 DGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 443 dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+++.|+.+.-.. +.+|.+.+.
T Consensus 235 ~~~~lfVTGK~W---p~~~ev~~~ 255 (262)
T 3nol_A 235 EHHRLFVTGKLW---PKVFEITLT 255 (262)
T ss_dssp TTTEEEEEETTC---SEEEEEEEE
T ss_pred CCCEEEEECCCC---CceEEEEEe
Confidence 999999888666 667776654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00046 Score=68.71 Aligned_cols=134 Identities=8% Similarity=-0.013 Sum_probs=73.4
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++++..+....... ......+..++++|||+ |+++.. ....|++++.
T Consensus 129 ~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 178 (270)
T 1rwi_B 129 NRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGN-----VYVTDT--------------DNNRVVKLEA---------- 178 (270)
T ss_dssp TEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEECCCceeEeec-cccCCCceeEEEeCCCC-----EEEEEC--------------CCCEEEEEec----------
Confidence 56778876554443331 11222567889999986 665541 1237889987
Q ss_pred hhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 298 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
.+......... ........+++|| .|++.... ...|++++..+........
T Consensus 179 -------~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~----------~~~v~~~~~~~~~~~~~~~---------- 230 (270)
T 1rwi_B 179 -------ESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHN----------TNQVVKLLAGSTTSTVLPF---------- 230 (270)
T ss_dssp -------TTCCEEECCCSSCCSEEEEEECTTC-CEEEEETT----------TSCEEEECTTCSCCEECCC----------
T ss_pred -------CCCceEeecccCCCCceEEEECCCC-CEEEEECC----------CCcEEEEcCCCCcceeecc----------
Confidence 44443333222 2446678999999 45554432 2458888876533211100
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
..+ ..+..+++++||+ |+++....+ .|..+++.
T Consensus 231 ----~~~-----~~p~~i~~~~~g~-l~v~~~~~~--~v~~~~~~ 263 (270)
T 1rwi_B 231 ----TGL-----NTPLAVAVDSDRT-VYVADRGND--RVVKLTSL 263 (270)
T ss_dssp ----CSC-----SCEEEEEECTTCC-EEEEEGGGT--EEEEECCC
T ss_pred ----CCC-----CCceeEEECCCCC-EEEEECCCC--EEEEEcCC
Confidence 000 0234567888986 766654444 34444443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.91 E-value=0.001 Score=70.64 Aligned_cols=162 Identities=10% Similarity=0.099 Sum_probs=102.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.....++|++.+.+|.++.. ....|+.+...+ ....++...... ..++++.+.++.|++...
T Consensus 112 ~~~~~l~~d~~~~~lywsD~---~~~~I~~~~~~g~~~~~~~~~~~~~~~~~---------p~glavD~~~~~lY~~d~- 178 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQA---------PDGLAVDWIHSNIYWTDS- 178 (400)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEEC------CCCEEEECSSCSC---------EEEEEEETTTTEEEEEET-
T ss_pred CcceEEeeeeccCceEEEec---CCCeEEEEEcccCCCCCcceEEEeCCCCC---------cccEEEEecCCceEEEEC-
Confidence 45678899998888866533 234577666322 223333211111 147778887777766521
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNE 252 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~ 252 (771)
....|.++++++...+.+ ... -..+..++..|.+.
T Consensus 179 ------------------------------------------~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 179 ------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp ------------------------------------------TTTEEEEECTTTCSEEEE--EECSSCCEEEEEEETTTT
T ss_pred ------------------------------------------CCCeEEEEeCCCCceEEE--EeCCCCCcceEEEecccC
Confidence 235789999988876666 332 23467788999877
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l 331 (771)
. |+++-+. ....|+++++ ++...+.+. .........+++|++++|
T Consensus 215 ~----ly~td~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 215 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp E----EEEEECS-------------SSCCEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred e----EEEEeCC-------------CCCEEEEEeC-----------------CCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 6 7766432 1237999998 555544443 333456788999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+|.... ...|+++|+++...
T Consensus 261 Y~aD~~----------~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 261 YWVDSK----------LHSISSIDVNGGNR 280 (400)
T ss_dssp EEEETT----------TTEEEEEETTSCCC
T ss_pred EEEECC----------CCEEEEEeCCCCcc
Confidence 998754 25799999876443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.88 E-value=7.5e-05 Score=85.52 Aligned_cols=180 Identities=8% Similarity=-0.037 Sum_probs=105.4
Q ss_pred ceEEEEEccC----CceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 218 PSLFVININS----GEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 218 ~~l~v~d~~~----~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
..|+++++++ .....+ ... -..+..+++.+.+.. |+++-. ....|+++++
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~glavD~~~g~----LY~tD~--------------~~~~I~v~d~----- 482 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT----- 482 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCB--CCSCC--CCCEECCCSSSB----CEECCT--------------TTSCEEEEBS-----
T ss_pred CeEEEEecCCCCCCcceEEE--EeCCCCCcceEEEEeeCCc----EEEEec--------------cCCeEEEEec-----
Confidence 5678888875 333333 222 123556777766666 666431 2237899987
Q ss_pred hhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 293 EASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++...+.+... .......+++|++.+|+|..... ...|+++++++...+.+...
T Consensus 483 ------------dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~l~~~---- 537 (699)
T 1n7d_A 483 ------------KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE---- 537 (699)
T ss_dssp ------------SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS---------SCCEEBCCSSSCCCCEESCS----
T ss_pred ------------CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC---------CCeEEEEeCCCCCeeEEEeC----
Confidence 55555554432 34467789999988888766321 24688888765433221110
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~ 450 (771)
... ....++|++++++||++.. ....|+++++++...+.+..... ...-..++.+++.||++
T Consensus 538 --------~l~-------~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 538 --------NIQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp --------SCS-------SCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred --------CCC-------CccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 001 2457889999888988753 34578899997766666654221 11122455677777766
Q ss_pred EeCCCCCCeEEEEEecc
Q 004141 451 SSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 451 ~~~~~~p~~l~~~~~~~ 467 (771)
.. ...+|++++..+
T Consensus 601 d~---~~~~V~~~d~~~ 614 (699)
T 1n7d_A 601 DI---INEAIFSANRLT 614 (699)
T ss_dssp CS---TTTCEEEEETTT
T ss_pred eC---CCCeEEEEEccC
Confidence 52 335677776533
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0024 Score=73.49 Aligned_cols=182 Identities=8% Similarity=-0.045 Sum_probs=110.0
Q ss_pred ceEEEEEccCC----ceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~----~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+++++++. ..+.+. ...-..+..+++.+.++. |+++-. ....|+++++
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~----LY~tD~--------------~~~~I~v~~l------ 500 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 500 (791)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred eeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCc----EEEEec--------------CCCeEEEEeC------
Confidence 57888888763 333331 112335667888888886 777642 2337999998
Q ss_pred hhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+.|.. ........++.|.+.+|+|+.... ..+|+++++++...+.+...
T Consensus 501 -----------dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---------~~~I~~~~~dG~~~~~lv~~----- 555 (791)
T 3m0c_C 501 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 555 (791)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECS-----
T ss_pred -----------CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---------CCeEEEEecCCCceEEEEeC-----
Confidence 6555555543 334577889999988898887432 24699999876443221110
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~~ 451 (771)
.+ ..+..+++.+++++||++- .....|+++++++...+.+..... ...-..++.+++.||++-
T Consensus 556 ---------~l-----~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 556 ---------NI-----QWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp ---------SC-----SCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred ---------CC-----CCceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 00 0123566777788888874 344579999998877776654322 122345667788887765
Q ss_pred eCCCCCCeEEEEEeccc
Q 004141 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 ~~~~~p~~l~~~~~~~~ 468 (771)
. ....|++++..++
T Consensus 620 ~---~~~~I~~~dk~tG 633 (791)
T 3m0c_C 620 I---INEAIFSANRLTG 633 (791)
T ss_dssp T---TTTEEEEEETTTC
T ss_pred C---CCCEEEEEeCCCC
Confidence 3 3356777764444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0002 Score=81.94 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=87.8
Q ss_pred CceEEEEEccCCceeeccCCCC-CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+++++++...+.+ ... -.....+++.|++.. |+++.+. ....|+++++
T Consensus 474 ~~~I~v~d~dg~~~~~l--~~~~~~~P~giavDp~~g~----ly~td~~-------------~~~~I~~~~~-------- 526 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTL--FREQGSKPRAIVVDPVHGF----MYWTDWG-------------TPAKIKKGGL-------- 526 (699)
T ss_dssp TSCEEEEBSSSCCEEEE--CCCSSCCCCCEECCSSSSC----CEECCCS-------------SSCCEEBCCS--------
T ss_pred CCeEEEEecCCCceEEE--EeCCCCCcceEEEccCCCc----EEEcccC-------------CCCeEEEEeC--------
Confidence 36789999988877666 333 235677899998887 7766421 1237888887
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++...+.+. ........++|+|++++|+|+... ...|+++++.+...+.+...
T Consensus 527 ---------dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~----------~~~I~~~d~dG~~~~~~~~~------- 580 (699)
T 1n7d_A 527 ---------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------LHSISSIDVNGGNRKTILED------- 580 (699)
T ss_dssp ---------SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT----------TTEEEEECSSSSCCEEECCC-------
T ss_pred ---------CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC----------CCeEEEEccCCCceEEEEec-------
Confidence 444443332 333346678999999999888754 25699999875433211110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
...++ ....+++ |+..||++. .....|++++..+|+.....
T Consensus 581 -----~~~~~-----~P~glav--d~~~lywtd--~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 581 -----EKRLA-----HPFSLAV--FEDKVFWTD--IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp -----SSSCS-----SCCCCEE--ETTEEEEEC--STTTCEEEEETTTEEEEECC
T ss_pred -----CCcCC-----CceEeEE--ECCEEEEEe--CCCCeEEEEEccCCCceEEe
Confidence 00010 1123333 555677665 23346788887777655443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0037 Score=70.30 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=108.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.......|.+++.+|.++ +. ....|+.+. +++....++...... ..++++.+.++.|++.-.
T Consensus 37 ~~~~~l~~d~~~~~lywt-D~--~~~~I~r~~~~g~~~~~v~~~g~~~---------P~GlAvD~~~~~LY~tD~----- 99 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWT-DI--SLKTISRAFMNGSALEHVVEFGLDY---------PEGMAVDWLGKNLYWADT----- 99 (628)
T ss_dssp SCEEEEEEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEEET-----
T ss_pred CceEEEEEECCCCEEEEE-EC--CCCeEEEEECCCCCcEEEEeCCCCC---------cceEEEEeCCCEEEEEEC-----
Confidence 346678999998888655 33 234677777 444444444432111 147888888888876521
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.++++++...+.+. ...-..+..++..|....
T Consensus 100 --------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~iavdp~~G~---- 136 (628)
T 4a0p_A 100 --------------------------------------GTNRIEVSKLDGQHRQVLV-WKDLDSPRALALDPAEGF---- 136 (628)
T ss_dssp --------------------------------------TTTEEEEEETTSTTCEEEE-CSSCCCEEEEEEETTTTE----
T ss_pred --------------------------------------CCCEEEEEecCCCcEEEEE-eCCCCCcccEEEccCCCe----
Confidence 2368999999888766662 122235678889987665
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
|+++-|. ....|+++++ ++...+.+..........++++++++|+|....
T Consensus 137 lY~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 137 MYWTEWG-------------GKPKIDRAAM-----------------DGSERTTLVPNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSCSSEEEEEEETTTTEEEEEETT
T ss_pred EEEeCCC-------------CCCEEEEEeC-----------------CCCceEEEECCCCCcceEEEccccCEEEEEECC
Confidence 7766532 1348999998 666666655555557788999999999988754
Q ss_pred CCCCCCCccccccceeeecCCCCC
Q 004141 338 SSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 338 ~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
. ..|+++|+++...
T Consensus 187 ~----------~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 187 T----------NLIESSNMLGLNR 200 (628)
T ss_dssp T----------TEEEEEETTSCSC
T ss_pred C----------CEEEEEcCCCCce
Confidence 3 5699999876443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00087 Score=72.22 Aligned_cols=211 Identities=9% Similarity=0.001 Sum_probs=110.2
Q ss_pred ceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccc
Q 004141 70 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 147 (771)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g 147 (771)
..+.+.++++... .....+... ...+...+| ||+.|+..+..+ .+.+| ..++........ .+
T Consensus 151 ~dg~i~iwd~~~~-~~~~~~~~h-----~~~v~~l~~--~~~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~h---~~ 214 (435)
T 1p22_A 151 RDNTIKIWDKNTL-ECKRILTGH-----TGSVLCLQY--DERVIITGSSDS-----TVRVWDVNTGEMLNTLIHH---CE 214 (435)
T ss_dssp SSSCEEEEESSSC-CEEEEECCC-----SSCEEEEEC--CSSEEEEEETTS-----CEEEEESSSCCEEEEECCC---CS
T ss_pred CCCeEEEEeCCCC-eEEEEEcCC-----CCcEEEEEE--CCCEEEEEcCCC-----eEEEEECCCCcEEEEEcCC---CC
Confidence 4456777776332 111222211 234555666 888887765443 34455 333333322211 11
Q ss_pred cccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC---CCCccCCCCCCcccccCCcCcccCCccCceEEEEE
Q 004141 148 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 224 (771)
Q Consensus 148 ~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 224 (771)
.+..+.|++ ..|+..+.+.... .|+....... .....+......+.+ +....+++..+..|.+||
T Consensus 215 ------~v~~l~~~~--~~l~s~s~dg~i~--vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd 282 (435)
T 1p22_A 215 ------AVLHLRFNN--GMMVTCSKDRSIA--VWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282 (435)
T ss_dssp ------CEEEEECCT--TEEEEEETTSCEE--EEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred ------cEEEEEEcC--CEEEEeeCCCcEE--EEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEE
Confidence 125777764 4666666554322 2322111111 011112222222333 333445566678999999
Q ss_pred ccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCC
Q 004141 225 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS 304 (771)
Q Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 304 (771)
+.+++..... ......+..+.| +++. |+..+ .+..|.++|+
T Consensus 283 ~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~g~---------------~dg~i~iwd~----------------- 323 (435)
T 1p22_A 283 TSTCEFVRTL-NGHKRGIACLQY--RDRL----VVSGS---------------SDNTIRLWDI----------------- 323 (435)
T ss_dssp TTTCCEEEEE-ECCSSCEEEEEE--ETTE----EEEEE---------------TTSCEEEEET-----------------
T ss_pred CCcCcEEEEE-cCCCCcEEEEEe--CCCE----EEEEe---------------CCCeEEEEEC-----------------
Confidence 9988765441 223334555566 5554 55544 3347888998
Q ss_pred CCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 305 EDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 305 ~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+++ ...+..+...+....| ||+.|+..+.+. .|.+||+.++.
T Consensus 324 ~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg-----------~i~vwd~~~~~ 367 (435)
T 1p22_A 324 ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG-----------KIKVWDLVAAL 367 (435)
T ss_dssp TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS-----------CEEEEEHHHHT
T ss_pred CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCC-----------cEEEEECCCCC
Confidence 5444 4556656666777777 888887776553 48888886554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0017 Score=63.21 Aligned_cols=200 Identities=11% Similarity=0.012 Sum_probs=112.8
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
+...|+ || + +|.+....+...+..++ ..++..+.+.++.... +...+++|++|+.+..
T Consensus 46 qGL~~~-~~-~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~F----------geGit~~g~~ly~ltw-------- 104 (262)
T 3nol_A 46 EGFFYR-NG-Y-FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYF----------GEGISDWKDKIVGLTW-------- 104 (262)
T ss_dssp EEEEEE-TT-E-EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEES--------
T ss_pred ceEEEE-CC-E-EEEECCCCCCceEEEEECCCCcEEEEEecCCccc----------eeEEEEeCCEEEEEEe--------
Confidence 456777 55 4 46666544566788888 6777766666644331 3335567887766522
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 260 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~ 260 (771)
....++++|.++.++..- .+... .....++||+. |+.
T Consensus 105 -----------------------------------~~~~v~v~D~~t~~~~~t--i~~~~--eG~glt~dg~~----L~~ 141 (262)
T 3nol_A 105 -----------------------------------KNGLGFVWNIRNLRQVRS--FNYDG--EGWGLTHNDQY----LIM 141 (262)
T ss_dssp -----------------------------------SSSEEEEEETTTCCEEEE--EECSS--CCCCEEECSSC----EEE
T ss_pred -----------------------------------eCCEEEEEECccCcEEEE--EECCC--CceEEecCCCE----EEE
Confidence 237899999998876543 22221 23456789986 554
Q ss_pred EeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCC--CCccc---cceeecCCCCEEEEE
Q 004141 261 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE--SISSA---FFPRFSPDGKFLVFL 334 (771)
Q Consensus 261 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~--~~~~~---~~p~~SpDG~~l~f~ 334 (771)
++ ....|+.+|. ++.+. .++.- ..... ....|. ||+ |+ .
T Consensus 142 -Sd--------------Gs~~i~~iDp-----------------~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly-a 186 (262)
T 3nol_A 142 -SD--------------GTPVLRFLDP-----------------ESLTPVRTITVTAHGEELPELNELEWV-DGE-IF-A 186 (262)
T ss_dssp -CC--------------SSSEEEEECT-----------------TTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE-E
T ss_pred -EC--------------CCCeEEEEcC-----------------CCCeEEEEEEeccCCccccccceeEEE-CCE-EE-E
Confidence 42 2347999997 55432 23222 11121 234565 774 44 4
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCC--CCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
..-. ...|.++|.++++... .+++-...... ..+ ....+..++|+|++++||++. ..+
T Consensus 187 n~w~---------~~~I~vIDp~tG~V~~-------~Id~~~L~~~~~~~~~--~~~vlNGIA~dp~~~~lfVTG--K~W 246 (262)
T 3nol_A 187 NVWQ---------TNKIVRIDPETGKVTG-------IIDLNGILAEAGPLPS--PIDVLNGIAWDKEHHRLFVTG--KLW 246 (262)
T ss_dssp EETT---------SSEEEEECTTTCBEEE-------EEECTTGGGGSCSCCS--SCCCEEEEEEETTTTEEEEEE--TTC
T ss_pred EEcc---------CCeEEEEECCCCcEEE-------EEECCcCccccccccC--cCCceEEEEEcCCCCEEEEEC--CCC
Confidence 3322 3579999998887521 11110000000 000 001245789999999887764 466
Q ss_pred eEEEEEEC
Q 004141 413 QVIISVNV 420 (771)
Q Consensus 413 ~~l~~~d~ 420 (771)
..||.|.+
T Consensus 247 p~~~ev~~ 254 (262)
T 3nol_A 247 PKVFEITL 254 (262)
T ss_dssp SEEEEEEE
T ss_pred CceEEEEE
Confidence 78887764
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0036 Score=72.06 Aligned_cols=162 Identities=9% Similarity=0.097 Sum_probs=102.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----cceEEEecCCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.....++|.+.+.+|+++ +.. ...|+.+...+ ....++...... ..++++.+.++.|+++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~s-D~~--~~~I~~~~l~g~~~~~~~~~vi~~~l~~---------P~GLAvD~~~~~LY~tD~- 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWS-DLS--QRMICSTQLDRAHGVSSYDTVISRDIQA---------PDGLAVDWIHSNIYWTDS- 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEE-ETT--TTEEEEEEC--------CEEEECSSCSC---------CCEEEEETTTTEEEEEET-
T ss_pred CceEEEeecccCCeeEEe-ecc--ceeEEEEeccCCCCCcceeEEEecCCCC---------cceeeeeecCCcEEEEec-
Confidence 345678899888877555 332 34577666332 223333311111 147888888888776521
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-CCccceEEEecCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNE 252 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-~~~~~~~~wspDg~ 252 (771)
....|+++++++...+.+ ... -..+..++..|.+.
T Consensus 491 ------------------------------------------~~~~I~v~~ldG~~~~~l--~~~~l~~P~gIaVDp~~g 526 (791)
T 3m0c_C 491 ------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHG 526 (791)
T ss_dssp ------------------------------------------TTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTTT
T ss_pred ------------------------------------------CCCeEEEEeCCCCeEEEE--EeCCCCCcceEEEecCCC
Confidence 236899999998877666 322 23467889999877
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l 331 (771)
. |+++-|. ....|+++++ ++...+.|.. ........++++++++|
T Consensus 527 ~----LYwtD~g-------------~~~~I~~~~~-----------------dG~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 527 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp E----EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred C----EEEecCC-------------CCCeEEEEec-----------------CCCceEEEEeCCCCCceEEEEecCCCeE
Confidence 6 7776532 1237999998 5555544433 33456778999999999
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
||+... ...|+++++++...
T Consensus 573 YwaD~~----------~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 573 YWVDSK----------LHSISSIDVNGGNR 592 (791)
T ss_dssp EEEETT----------TTEEEEEETTSCSC
T ss_pred EEEeCC----------CCcEEEEecCCCce
Confidence 988644 25799999876544
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00028 Score=68.41 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=81.5
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHH-----------HH------HHCCcEEEEECCCCCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-----------FL------SSVGYSLLIVNYRGSLG 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~-----------~l------a~~G~~Vv~~d~rG~~~ 579 (771)
.+..+..|++.... .....|+|++++|||+.+... +..... .+ -.+-..++.+|.+-..|
T Consensus 30 ~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~-~g~~~E~GP~~v~~~~~~l~~N~~sW~~~anvlfiDqPvGtG 106 (255)
T 1whs_A 30 AGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVA-YGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVG 106 (255)
T ss_dssp TTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTT-THHHHTSSSEEECGGGCCEEECTTCGGGTSEEEEECCSTTST
T ss_pred CCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHH-HHHHhccCCeEecCCCCeeeeCcccccccCCEEEEecCCCCc
Confidence 46678888886542 345689999999999875432 011000 00 01237899999653334
Q ss_pred CChhhhhcCC-CCccccchhhHHHHHHHHHH-cCCCCCCeEEEEEcChhHHHHHHHHhhC------CCceeEEEecCCcc
Q 004141 580 FGEEALQSLP-GKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLC 651 (771)
Q Consensus 580 ~g~~~~~~~~-~~~~~~~~~D~~~~i~~l~~-~~~~d~~ri~l~G~S~GG~~a~~~a~~~------p~~~~~~v~~~p~~ 651 (771)
+......... ..-.....+|+..+++...+ .+.....++.|+|.|+||..+..+|..- .-.++++++.+|++
T Consensus 107 fSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkGi~ign~~~ 186 (255)
T 1whs_A 107 FSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVGNGLI 186 (255)
T ss_dssp TCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEEEEEEEECC
T ss_pred cCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccceEEecCCcc
Confidence 4332111000 01112235666666654444 3345567899999999999988777521 23579999999998
Q ss_pred chh
Q 004141 652 NLA 654 (771)
Q Consensus 652 ~~~ 654 (771)
+..
T Consensus 187 d~~ 189 (255)
T 1whs_A 187 DDY 189 (255)
T ss_dssp BHH
T ss_pred CHH
Confidence 764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0041 Score=69.90 Aligned_cols=205 Identities=10% Similarity=0.038 Sum_probs=122.7
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcc--eEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
.....+.|++.+.+|.++ +.. ...|+.+...+.. ..++...... ..++++.+.++.|++...
T Consensus 40 ~~~~~ld~~~~~~~ly~s-D~~--~~~I~r~~~~g~~~~~~v~~~~~~~---------P~GlAvD~~~~~ly~~d~---- 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWS-DVS--EEAIKRTEFNKTESVQNVVVSGLLS---------PDGLACDWLGEKLYWTDS---- 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEE-ETT--TTEEEEEEC-----CEEEECSSCSC---------EEEEEEETTTTEEEEEET----
T ss_pred CceEEEEEEeCCCEEEEE-ECC--CCeEEEEEccCCCceEEEEeCCCCC---------cCeEEEEecCCEEEEEeC----
Confidence 446678999998888554 432 3457776633322 2222221111 158889998887876521
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
....|.++++++...+.+. ...-..+..++..|.+..
T Consensus 104 ---------------------------------------~~~~I~v~~~dG~~~~~l~-~~~l~~P~~Iavdp~~g~--- 140 (619)
T 3s94_A 104 ---------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF--- 140 (619)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSCCCCEEEETTTTE---
T ss_pred ---------------------------------------CCCEEEEEECCCCCEEEEE-eCCCCCCceEEEecCCCe---
Confidence 2368999999988766662 122235778899998776
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+|+-|. ....|++.++ ++...+.+. .........++++++++|+|..
T Consensus 141 -ly~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 141 -MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp -EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred -EEEeccC-------------CCCEEEEEEC-----------------CCCceEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 7776532 1237999998 555544443 3334467789999999999886
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 415 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l 415 (771)
.. ...|+++|+++...+.+..+. +. .+..+++. +..||++. .....|
T Consensus 190 ~~----------~~~I~~~~~dG~~~~~~~~~~--------------~~-----~P~gi~~~--~~~ly~td--~~~~~V 236 (619)
T 3s94_A 190 AK----------LNFIHKSNLDGTNRQAVVKGS--------------LP-----HPFALTLF--EDILYWTD--WSTHSI 236 (619)
T ss_dssp TT----------TCCEEEESSSCCEEC----------------------------CCCEEES--SSEEEEEC--TTTCSE
T ss_pred CC----------CCeEEEecCCCCccEEEEeCC--------------CC-----CceEEEEe--CCEEEEec--CCCCEE
Confidence 54 256999998775543332110 00 12334443 34676653 234568
Q ss_pred EEEECCCCcEE
Q 004141 416 ISVNVSSGELL 426 (771)
Q Consensus 416 ~~~d~~tg~~~ 426 (771)
+++|..+|+..
T Consensus 237 ~~~d~~tg~~~ 247 (619)
T 3s94_A 237 LACNKYTGEGL 247 (619)
T ss_dssp EEEESSSCCCC
T ss_pred EEEECCCCccc
Confidence 89998877643
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0041 Score=63.75 Aligned_cols=194 Identities=11% Similarity=-0.047 Sum_probs=99.4
Q ss_pred eEEEEEccCCceeeccCCCC---CCccceEEEec-CCCCCccEEEEEeecCc-ceeee--eeeeccCCceeEEEeccccc
Q 004141 219 SLFVININSGEVQAVKGIPK---SLSVGQVVWAP-LNEGLHQYLVFVGWSSE-TRKLG--IKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 219 ~l~v~d~~~~~~~~l~~~~~---~~~~~~~~wsp-Dg~~~~~~l~~~~~~~~-~~~~g--~~~~~~~~~~l~~~d~~~~~ 291 (771)
.|+++|.++++.+.+..... -.....+++.| ||+ |+++..... ..+.. ..........|+++|.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---- 172 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---- 172 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET----
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-----EEEECCcccccccccceehcccCCCceEEEEeC----
Confidence 47778877666555421111 11355688999 885 777642210 00000 0000012347999997
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
.+++.+.+..........+|+|||+.|++.... ..+|+++++.+.... ....+
T Consensus 173 -------------~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----------~~~I~~~~~~~~~~~----~~~~~ 225 (322)
T 2fp8_A 173 -------------STKETTLLLKELHVPGGAEVSADSSFVLVAEFL----------SHQIVKYWLEGPKKG----TAEVL 225 (322)
T ss_dssp -------------TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----------GTEEEEEESSSTTTT----CEEEE
T ss_pred -------------CCCEEEEeccCCccCcceEECCCCCEEEEEeCC----------CCeEEEEECCCCcCC----ccceE
Confidence 556554443322334568999999988776543 256999998753211 11011
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeee--------CCeeEEEEEECCCCcEEEecCCCCC-ce-eeEEe
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------GSSQVIISVNVSSGELLRITPAESN-FS-WSLLT 441 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~--------~~~~~l~~~d~~tg~~~~l~~~~~~-~~-~~~~s 441 (771)
.. .+| ...++..+||+ |+++... .....|++++.++..+..+....+. .. ...+.
T Consensus 226 ~~---------~~g-----P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 226 VK---------IPN-----PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EE---------CSS-----EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEE
T ss_pred Ee---------CCC-----CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEE
Confidence 10 111 23456788887 6555443 1245799999864444455433221 11 11222
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 442 LDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 442 ~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
.+++.|++... ....|.++++.
T Consensus 291 ~~~g~L~v~~~---~~~~i~~~~~~ 312 (322)
T 2fp8_A 291 EHDGLLYIGTL---FHGSVGILVYD 312 (322)
T ss_dssp EETTEEEEECS---SCSEEEEEEC-
T ss_pred EeCCEEEEeec---CCCceEEEecc
Confidence 34667776542 23556666654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.012 Score=66.11 Aligned_cols=178 Identities=10% Similarity=-0.022 Sum_probs=113.1
Q ss_pred ceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|++++++++..+.+ .... ..+..++..+.++. |+++-. ....|.++++
T Consensus 59 ~~I~r~~~~g~~~~~v--~~~g~~~P~GlAvD~~~~~----LY~tD~--------------~~~~I~v~~~--------- 109 (628)
T 4a0p_A 59 KTISRAFMNGSALEHV--VEFGLDYPEGMAVDWLGKN----LYWADT--------------GTNRIEVSKL--------- 109 (628)
T ss_dssp TEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CeEEEEECCCCCcEEE--EeCCCCCcceEEEEeCCCE----EEEEEC--------------CCCEEEEEec---------
Confidence 6889999988776665 2322 35677888888887 777642 2247999998
Q ss_pred hhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 297 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++...+.|. .........++.|....|+|..... ..+|+++++++...+.+...
T Consensus 110 --------dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~l~~~-------- 164 (628)
T 4a0p_A 110 --------DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTTLVPN-------- 164 (628)
T ss_dssp --------TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEEEECC--------
Confidence 555544443 3344567889999888888876432 35799999877554322110
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 455 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~ 455 (771)
.. .+..+++.+++++||++.. ....|++++++++..+.+..... .-..++.+++.||++-.
T Consensus 165 -----~~-------~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~--~P~glav~~~~ly~tD~--- 225 (628)
T 4a0p_A 165 -----VG-------RANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLP--HPFGLTQYQDYIYWTDW--- 225 (628)
T ss_dssp -----CS-------SEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCS--CEEEEEEETTEEEEEET---
T ss_pred -----CC-------CcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCC--CceEEEEECCEEEEecC---
Confidence 01 2345678888888988754 34578999998766654432221 22345666788877652
Q ss_pred CCCeEEEEEeccc
Q 004141 456 DVPQVKYGYFVDK 468 (771)
Q Consensus 456 ~p~~l~~~~~~~~ 468 (771)
....|++++..++
T Consensus 226 ~~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 SRRSIERANKTSG 238 (628)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCEEEEEECCCC
Confidence 3456777775444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0033 Score=60.52 Aligned_cols=179 Identities=13% Similarity=0.195 Sum_probs=104.4
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
+...|.++|+++|++..-...+. .......++++++ |+...|. ...++++|.
T Consensus 41 g~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~----ly~ltw~--------------~~~v~v~D~-------- 92 (243)
T 3mbr_X 41 GRSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDR----LIQLTWR--------------NHEGFVYDL-------- 92 (243)
T ss_dssp TSCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEESS--------------SSEEEEEET--------
T ss_pred CCceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCE----EEEEEee--------------CCEEEEEEC--------
Confidence 34789999999998766521232 2333445667777 7777653 337999997
Q ss_pred hhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++.+. .++.... ....+++||+.|+ .++. ..+|+++|..+.+... .+.+
T Consensus 93 ---------~tl~~~~ti~~~~---~Gwglt~dg~~L~-vSdg----------s~~l~~iDp~t~~~~~-------~I~V 142 (243)
T 3mbr_X 93 ---------ATLTPRARFRYPG---EGWALTSDDSHLY-MSDG----------TAVIRKLDPDTLQQVG-------SIKV 142 (243)
T ss_dssp ---------TTTEEEEEEECSS---CCCEEEECSSCEE-EECS----------SSEEEEECTTTCCEEE-------EEEC
T ss_pred ---------CcCcEEEEEeCCC---CceEEeeCCCEEE-EECC----------CCeEEEEeCCCCeEEE-------EEEE
Confidence 55443 3333221 2345678998765 4433 2569999987755311 1111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC-------------C-CCceeeEE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------E-SNFSWSLL 440 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~-------------~-~~~~~~~~ 440 (771)
-. ..++ ...+..+.|. ||+ |+ ...+. ...|.+||+++|++.....- . ......++
T Consensus 143 ~~----~g~~---~~~lNeLe~~-~G~-ly-anvw~-s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 143 TA----GGRP---LDNLNELEWV-NGE-LL-ANVWL-TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp EE----TTEE---CCCEEEEEEE-TTE-EE-EEETT-TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred cc----CCcc---cccceeeEEe-CCE-EE-EEECC-CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEE
Confidence 10 1111 0012234454 664 65 33333 34899999999998754321 1 12355788
Q ss_pred eecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 441 TLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 441 s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+++++.|+.+.-.. +.+|.+.+.
T Consensus 212 d~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 212 DAEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp ETTTTEEEEEETTC---SEEEEEEEC
T ss_pred cCCCCEEEEECCCC---CcEEEEEEe
Confidence 88899888877555 667776664
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0019 Score=64.82 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=54.9
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|+++|.++.....+........+..++++|||+ |+++.. ....|++++.
T Consensus 142 ~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 192 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY---------- 192 (286)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET----------
T ss_pred CEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 57888887665554442111223467889999986 555431 1236888886
Q ss_pred hhhcCCCCCCcceecCCC--CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecC
Q 004141 298 ELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 357 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~--~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~ 357 (771)
++.....+... .......+++|||+ |+...... ...|.++|.+
T Consensus 193 -------~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~---------~~~i~~~~~~ 237 (286)
T 1q7f_A 193 -------EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHN---------NFNLTIFTQD 237 (286)
T ss_dssp -------TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSS---------SCEEEEECTT
T ss_pred -------CCCEEEEEccCCccCCCcEEEECCCCC-EEEEeCCC---------CEEEEEECCC
Confidence 44444444332 23466789999996 44433221 1268888854
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00031 Score=75.92 Aligned_cols=112 Identities=18% Similarity=0.122 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCCCCCCC--CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh---c-----CCCCccccchhhHHHHHH
Q 004141 536 CDPLIVVLHGGPHSVSL--SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ---S-----LPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~--~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~---~-----~~~~~~~~~~~D~~~~i~ 605 (771)
..|++|++-| -+.... ..-........+.|-.+|..++|- ||.+..- . +..-...+.++|+...++
T Consensus 42 ~gPIfl~~gG-Eg~~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~ 117 (472)
T 4ebb_A 42 EGPIFFYTGN-EGDVWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAELLR 117 (472)
T ss_dssp TCCEEEEECC-SSCHHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHH
T ss_pred CCcEEEEECC-CccccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHHHHH
Confidence 3687777744 222100 000112334456799999999997 6665431 0 111122345788888888
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.........+++++|.|+||.+|+++-.++|+.+.++++.++++
T Consensus 118 ~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 118 ALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 8887655556789999999999999999999999999888777643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0073 Score=59.00 Aligned_cols=210 Identities=12% Similarity=0.142 Sum_probs=117.6
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
...+..+|.|++++|+.+.+. ...++.++..++..+.+.+... ..+.++++.++|+ ++.+.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~v~~~i~l~g~--------~D~EGIa~~~~g~-~~vs~E~----- 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGDLIRTIPLDFV--------KDLETIEYIGDNQ-FVISDER----- 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---TEEEEEEETTCCEEEEEECSSC--------SSEEEEEECSTTE-EEEEETT-----
T ss_pred cCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCCEEEEEecCCC--------CChHHeEEeCCCE-EEEEECC-----
Confidence 457889999999988777664 4679999955666665554321 1126888998885 4333332
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce----eecc----CCCCCCccceEEEecC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVK----GIPKSLSVGQVVWAPL 250 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~----~~l~----~~~~~~~~~~~~wspD 250 (771)
...|+++++..... .... ..+.+.....++|+|+
T Consensus 90 --------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~ 131 (255)
T 3qqz_A 90 --------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ 131 (255)
T ss_dssp --------------------------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT
T ss_pred --------------------------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC
Confidence 24566666543321 1111 1234556789999999
Q ss_pred CCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCcccccee
Q 004141 251 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPR 323 (771)
Q Consensus 251 g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~ 323 (771)
+++ |+.+. +..+ ..||.++- .. .+...+.+ ........+.+
T Consensus 132 ~~~----L~va~-E~~p------------~~i~~~~g--~~-------------~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 132 DHT----FWFFK-EKNP------------IEVYKVNG--LL-------------SSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTE----EEEEE-ESSS------------EEEEEEES--TT-------------CSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCE----EEEEE-CcCC------------ceEEEEcc--cc-------------cCCceeeecchhhccccccCCceeEE
Confidence 987 77654 3222 25677661 00 11111111 01122356788
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc--cCCCCCcccccCCCCCCccccCCC
Q 004141 324 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC--AEGDCFPGLYSSSILSNPWLSDGC 401 (771)
Q Consensus 324 ~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~g~~~~~~~~~~~s~Dg~ 401 (771)
+.|.-..|+.++... ..|..+|.++. .+ ....+... .....++ ....+++.++|+
T Consensus 180 ~dp~tg~lliLS~~s----------~~L~~~d~~g~-~~-------~~~~L~~g~~~l~~~~~-----qpEGia~d~~G~ 236 (255)
T 3qqz_A 180 FNQQKNTLLVLSHES----------RALQEVTLVGE-VI-------GEMSLTKGSRGLSHNIK-----QAEGVAMDASGN 236 (255)
T ss_dssp EETTTTEEEEEETTT----------TEEEEECTTCC-EE-------EEEECSTTGGGCSSCCC-----SEEEEEECTTCC
T ss_pred EcCCCCeEEEEECCC----------CeEEEEcCCCC-EE-------EEEEcCCccCCcccccC-----CCCeeEECCCCC
Confidence 889888888888764 46888887653 21 01111100 0011122 234678999996
Q ss_pred EEEEEeeeCCeeEEEEEECCC
Q 004141 402 TMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 402 ~l~~~~~~~~~~~l~~~d~~t 422 (771)
||+++. . ..+|++...+
T Consensus 237 -lyIvsE-~--n~~y~f~~~~ 253 (255)
T 3qqz_A 237 -IYIVSE-P--NRFYRFTPQS 253 (255)
T ss_dssp -EEEEET-T--TEEEEEEC--
T ss_pred -EEEEcC-C--ceEEEEEecC
Confidence 766643 2 2678776543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.017 Score=56.36 Aligned_cols=202 Identities=10% Similarity=0.151 Sum_probs=112.0
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
++++|.||++.|+.+.+. .+.|+.+|+++...+.+.
T Consensus 30 SGla~~~~~~~L~aV~d~-------------------------------------------~~~I~~ld~~g~v~~~i~- 65 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINK-------------------------------------------PAAIVEMTTNGDLIRTIP- 65 (255)
T ss_dssp EEEEEETTTTEEEEEEET-------------------------------------------TEEEEEEETTCCEEEEEE-
T ss_pred ceeEEeCCCCEEEEEECC-------------------------------------------CCeEEEEeCCCCEEEEEe-
Confidence 799999999888877553 278999999844344442
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---cee-
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVN- 311 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~- 311 (771)
..+......+++.++|. ++.+. + +...|++++++. .+. ...
T Consensus 66 l~g~~D~EGIa~~~~g~-----~~vs~-E-------------~~~~l~~~~v~~----------------~~~i~~~~~~ 110 (255)
T 3qqz_A 66 LDFVKDLETIEYIGDNQ-----FVISD-E-------------RDYAIYVISLTP----------------NSEVKILKKI 110 (255)
T ss_dssp CSSCSSEEEEEECSTTE-----EEEEE-T-------------TTTEEEEEEECT----------------TCCEEEEEEE
T ss_pred cCCCCChHHeEEeCCCE-----EEEEE-C-------------CCCcEEEEEcCC----------------CCeeeeeeee
Confidence 23334566788887764 43332 2 223577666531 111 011
Q ss_pred ---c--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeec-CCCCCCCCccceeeEEecccccCCCCCcc
Q 004141 312 ---L--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW-PTNGNFSSLEKIVDVIPVVQCAEGDCFPG 385 (771)
Q Consensus 312 ---l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~g 385 (771)
+ ...+......+|+|++++|+....+. ...||.++- ..+. .+ .+........ ..
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---------p~~i~~~~g~~~~~--~l-----~i~~~~~~~~-~~--- 170 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---------PIEVYKVNGLLSSN--EL-----HISKDKALQR-QF--- 170 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---------SEEEEEEESTTCSS--CC-----EEEECHHHHH-TC---
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcC---------CceEEEEcccccCC--ce-----eeecchhhcc-cc---
Confidence 1 12233468899999999887766543 246888871 0111 01 1110000000 00
Q ss_pred cccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC---------CceeeEEeecCCEEEEEEeCCCC
Q 004141 386 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVD 456 (771)
Q Consensus 386 ~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~---------~~~~~~~s~dg~~l~~~~~~~~~ 456 (771)
....+..+++.|...+|++.+. ....|..+|.++.-+..+.-..+ ......++++|+ ||.+ +-+
T Consensus 171 -~~~d~S~l~~dp~tg~lliLS~--~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~-- 243 (255)
T 3qqz_A 171 -TLDDVSGAEFNQQKNTLLVLSH--ESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP-- 243 (255)
T ss_dssp -CSSCCCEEEEETTTTEEEEEET--TTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT--
T ss_pred -ccCCceeEEEcCCCCeEEEEEC--CCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC--
Confidence 0113456778787777877764 33568888986543333332221 335568888886 6555 333
Q ss_pred CCeEEEEE
Q 004141 457 VPQVKYGY 464 (771)
Q Consensus 457 p~~l~~~~ 464 (771)
-.+|++.
T Consensus 244 -n~~y~f~ 250 (255)
T 3qqz_A 244 -NRFYRFT 250 (255)
T ss_dssp -TEEEEEE
T ss_pred -ceEEEEE
Confidence 3677764
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00038 Score=74.35 Aligned_cols=126 Identities=21% Similarity=0.200 Sum_probs=76.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHH------------H------HHCCcEEEEECC-CCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF------------L------SSVGYSLLIVNY-RGSL 578 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~------------l------a~~G~~Vv~~d~-rG~~ 578 (771)
+..+..|++...+ .....|+|+++||||+.+.. + ..+.. + -.+-+.++.+|. +|.|
T Consensus 31 ~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~--~-g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP~GtG 105 (452)
T 1ivy_A 31 SKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVG 105 (452)
T ss_dssp TEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H-HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCSTTST
T ss_pred CCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H-HHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecCCCCC
Confidence 5678888776542 33467999999999987431 1 11100 0 023478999996 5643
Q ss_pred CCChhhhhcCCCCccc---cchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHhh----CCCceeEEEecCCc
Q 004141 579 GFGEEALQSLPGKVGS---QDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPL 650 (771)
Q Consensus 579 ~~g~~~~~~~~~~~~~---~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~p~ 650 (771)
+... . ...... ...+|+..++. ++...+.....++.|+|+|+||..+..+|.. .+-.++++++.+|+
T Consensus 106 -fS~~--~--~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~~ 180 (452)
T 1ivy_A 106 -FSYS--D--DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGL 180 (452)
T ss_dssp -TCEE--S--SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCC
T ss_pred -cCCc--C--CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCCc
Confidence 3321 1 111111 12444444444 4444334556889999999999966655542 34578999999998
Q ss_pred cch
Q 004141 651 CNL 653 (771)
Q Consensus 651 ~~~ 653 (771)
++.
T Consensus 181 ~d~ 183 (452)
T 1ivy_A 181 SSY 183 (452)
T ss_dssp SBH
T ss_pred cCh
Confidence 864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0076 Score=61.96 Aligned_cols=155 Identities=9% Similarity=0.024 Sum_probs=84.3
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+++|.+++++....+...-..+..++++|||+ |+++.. ....|++++.
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-----l~v~d~--------------~~~~v~~~~~--------- 119 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-----YWVTDV--------------ALHQVFKLDP--------- 119 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-----EEEEEC--------------CCCEEEEEeC---------
Confidence 468999999988876552212223567889999997 655541 2337888886
Q ss_pred hhhhcCCCCCC--cceecC---------CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCc
Q 004141 297 LELKESSSEDL--PVVNLT---------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 365 (771)
Q Consensus 297 ~~~~~~~~~~~--~~~~lt---------~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~ 365 (771)
++. ....+. .........+++|++..|++..... ...|++++.+ +......
T Consensus 120 --------~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~---------~~~I~~~~~~-g~~~~~~ 181 (329)
T 3fvz_A 120 --------HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC---------NSRIVQFSPS-GKFVTQW 181 (329)
T ss_dssp --------TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS---------CCEEEEECTT-SCEEEEE
T ss_pred --------CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC---------CCeEEEEcCC-CCEEEEe
Confidence 333 233331 1122466789999444465555311 2468888843 3221100
Q ss_pred cceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 366 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 366 ~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
..... -.......| ..+..++++||+..||++... ...|.+++.++|+....
T Consensus 182 ~~~g~----~~~~~~~~~-----~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~ 233 (329)
T 3fvz_A 182 GEESS----GSSPRPGQF-----SVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVRE 233 (329)
T ss_dssp CEECC----SSSCCTTEE-----SCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEE
T ss_pred ccCCC----CCCCCCccc-----CCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEE
Confidence 00000 000000011 123467889996667766543 34677788887776544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.014 Score=58.58 Aligned_cols=274 Identities=9% Similarity=-0.015 Sum_probs=131.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
......+++|+|+ +.+... ....++.++..+..... ...... ....++.++|||+ |++...... .-
T Consensus 15 ~~~~~i~~d~~g~-l~v~~~---~~~~v~~~d~~~~~~~~-~~~~~~-------~~~~~i~~~~~g~-l~v~~~~~~-~i 80 (299)
T 2z2n_A 15 TGPYGITVSDKGK-VWITQH---KANMISCINLDGKITEY-PLPTPD-------AKVMCLTISSDGE-VWFTENAAN-KI 80 (299)
T ss_dssp CCEEEEEECTTSC-EEEEET---TTTEEEEECTTCCEEEE-ECSSTT-------CCEEEEEECTTSC-EEEEETTTT-EE
T ss_pred CCccceEECCCCC-EEEEec---CCCcEEEEcCCCCeEEe-cCCccc-------CceeeEEECCCCC-EEEeCCCCC-eE
Confidence 3467788999997 333322 12346666633443322 221110 1124788889886 444332111 00
Q ss_pred CCccCCCCCCCC-CCccCCCCCCcccccCCcCcccCCc-cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 179 PTFSLGSTKGGS-SDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 179 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
..+... ..... .............+.++ |..++.. ....|+++|. +++...+........+..++++|||+
T Consensus 81 ~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~---- 153 (299)
T 2z2n_A 81 GRITKK-GIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA---- 153 (299)
T ss_dssp EEECTT-SCEEEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC----
T ss_pred EEECCC-CcEEEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC----
Confidence 001100 00000 00000111122334444 3444432 3467888888 55555442111223566788999985
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee--cCCCCccccceeecCCCCEEEEE
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|++... ....|+++|. +++... +...........+++||+ |++.
T Consensus 154 -l~v~~~--------------~~~~i~~~~~------------------~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 199 (299)
T 2z2n_A 154 -LWFTEN--------------QNNAIGRITE------------------SGDITEFKIPTPASGPVGITKGNDDA-LWFV 199 (299)
T ss_dssp -EEEEET--------------TTTEEEEECT------------------TCCEEEEECSSTTCCEEEEEECTTSS-EEEE
T ss_pred -EEEEeC--------------CCCEEEEEcC------------------CCcEEEeeCCCCCCcceeEEECCCCC-EEEE
Confidence 666542 2236888885 233332 222233456788999988 5444
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
... ...|+++|. ++....+ .... .. ..+..++++++|+ |++... ....
T Consensus 200 ~~~----------~~~i~~~~~-~g~~~~~-----------~~~~--~~-----~~~~~i~~~~~g~-l~v~~~--~~~~ 247 (299)
T 2z2n_A 200 EII----------GNKIGRITT-SGEITEF-----------KIPT--PN-----ARPHAITAGAGID-LWFTEW--GANK 247 (299)
T ss_dssp ETT----------TTEEEEECT-TCCEEEE-----------ECSS--TT-----CCEEEEEECSTTC-EEEEET--TTTE
T ss_pred ccC----------CceEEEECC-CCcEEEE-----------ECCC--CC-----CCceeEEECCCCC-EEEecc--CCce
Confidence 322 245888887 4432111 0000 00 1233566788887 655542 2346
Q ss_pred EEEEECCCCcEEEecCCC--CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 415 IISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~--~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
|++++. +++++.+.... .......+ ++| .+++..+ ...+++++..
T Consensus 248 i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g-~l~v~~~----~~~l~~~~~~ 294 (299)
T 2z2n_A 248 IGRLTS-NNIIEEYPIQIKSAEPHGICF-DGE-TIWFAME----CDKIGKLTLI 294 (299)
T ss_dssp EEEEET-TTEEEEEECSSSSCCEEEEEE-CSS-CEEEEET----TTEEEEEEEC
T ss_pred EEEECC-CCceEEEeCCCCCCccceEEe-cCC-CEEEEec----CCcEEEEEcC
Confidence 888898 57766664322 22233344 444 4555442 2457766654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0017 Score=63.23 Aligned_cols=175 Identities=13% Similarity=0.027 Sum_probs=101.5
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.++|++++++..-. .+. .......+++|++ |+...|.. ..++++|.
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~----Ly~ltw~~--------------~~v~V~D~---------- 123 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLG--NIFAEGLASDGER----LYQLTWTE--------------GLLFTWSG---------- 123 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSC----EEEEESSS--------------CEEEEEET----------
T ss_pred CEEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCE----EEEEEccC--------------CEEEEEEC----------
Confidence 34999999999875542 222 2223345778888 88877533 37999998
Q ss_pred hhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEeccc
Q 004141 298 ELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 376 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 376 (771)
++.+. .++.-. . ....+++||++|+. ++. ..+|+++|.++.+... .+.+..
T Consensus 124 -------~Tl~~~~ti~~~-~--eGwGLt~Dg~~L~v-SdG----------s~~l~~iDp~T~~v~~-------~I~V~~ 175 (268)
T 3nok_A 124 -------MPPQRERTTRYS-G--EGWGLCYWNGKLVR-SDG----------GTMLTFHEPDGFALVG-------AVQVKL 175 (268)
T ss_dssp -------TTTEEEEEEECS-S--CCCCEEEETTEEEE-ECS----------SSEEEEECTTTCCEEE-------EEECEE
T ss_pred -------CcCcEEEEEeCC-C--ceeEEecCCCEEEE-ECC----------CCEEEEEcCCCCeEEE-------EEEeCC
Confidence 55543 333322 1 23456689997754 432 2579999987755311 111111
Q ss_pred ccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC--------------CCceeeEEee
Q 004141 377 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLTL 442 (771)
Q Consensus 377 ~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~--------------~~~~~~~~s~ 442 (771)
. .++ -..+..+.|. || +|++. .+. ...|.+||+++|++.....-. ......++++
T Consensus 176 ~----g~~---v~~lNeLe~~-dG-~lyan-vw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 176 R----GQP---VELINELECA-NG-VIYAN-IWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp T----TEE---CCCEEEEEEE-TT-EEEEE-ETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred C----Ccc---cccccccEEe-CC-EEEEE-ECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 1 110 0012344566 77 46643 333 348999999999977543211 1235567888
Q ss_pred cCCEEEEEEeCCCCCCeEEEEEe
Q 004141 443 DGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 443 dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
+++.|+.+.-.. +.+|.+.+
T Consensus 245 ~~~rlfVTGK~W---p~~~ev~~ 264 (268)
T 3nok_A 245 GSGRIFMTGKLW---PRLFEVRL 264 (268)
T ss_dssp TTCCEEEEETTC---SEEEEEEE
T ss_pred CCCEEEEeCCCC---CceEEEEE
Confidence 888888776544 55665544
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.035 Score=55.54 Aligned_cols=171 Identities=12% Similarity=0.050 Sum_probs=94.0
Q ss_pred ceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 218 PSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|+++|.+ ++.+.+. .+ ....+..+++.++|+ |++... ....|+.++.
T Consensus 83 ~~v~~~d~~-g~~~~~~-~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~--------- 132 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYP-LPQPDSGPYGITEGLNGD-----IWFTQL--------------NGDRIGKLTA--------- 132 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECSTTC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CeEEEECCC-CCeEEec-CCCCCCCCccceECCCCC-----EEEEcc--------------CCCeEEEECC---------
Confidence 568888887 5555442 22 223566788888886 665541 2237888886
Q ss_pred hhhhcCCCCCCcceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+ ++...+ ...........+++||+ |++.... ...|+++|. +++...+
T Consensus 133 --------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~---------- 181 (300)
T 2qc5_A 133 --------D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ----------NNSIGRITN-TGKLEEY---------- 181 (300)
T ss_dssp --------T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEE----------
T ss_pred --------C-CCEEEccCCCCCCCceeEEECCCCC-EEEEecC----------CCeEEEECC-CCcEEEe----------
Confidence 4 443332 22334567788999998 5554432 235888887 3332111
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEEe
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~~l~~~~~ 452 (771)
..+.... .+..+++.++|+ |++... ....|++++. +++...+... ........++++|+ |+++..
T Consensus 182 -~~~~~~~-------~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 248 (300)
T 2qc5_A 182 -PLPTNAA-------APVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEW 248 (300)
T ss_dssp -ECSSTTC-------CEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEET
T ss_pred -eCCCCCC-------CcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEecc
Confidence 0000001 123556778886 655543 2346888888 6776665322 12233445666765 554442
Q ss_pred CCCCCCeEEEEEe
Q 004141 453 SPVDVPQVKYGYF 465 (771)
Q Consensus 453 ~~~~p~~l~~~~~ 465 (771)
....|++++.
T Consensus 249 ---~~~~i~~~~~ 258 (300)
T 2qc5_A 249 ---GANQIGRITN 258 (300)
T ss_dssp ---TTTEEEEECT
T ss_pred ---CCCeEEEECC
Confidence 2345776664
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.39 E-value=0.015 Score=58.96 Aligned_cols=161 Identities=12% Similarity=0.202 Sum_probs=93.5
Q ss_pred cceEEEeCCCCCeEEEEecCCC------------CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeec----CC
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN------------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN----SD 163 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wS----pD 163 (771)
.....+++|+|+ +++.....+ ....++.++..++...+....... .++.|+ ||
T Consensus 118 ~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~----------~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP----------NGIAVRHMNDGR 186 (314)
T ss_dssp CCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE----------EEEEEEECTTSC
T ss_pred CCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc----------ceEEEecccCCC
Confidence 356789999996 434332110 124577776335544433221122 478899 99
Q ss_pred CCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc-CCcee---eccCCCCC
Q 004141 164 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQ---AVKGIPKS 239 (771)
Q Consensus 164 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~~~~~---~l~~~~~~ 239 (771)
|+.|++... ....|+++|++ +++.. .+...+..
T Consensus 187 g~~l~v~~~-------------------------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 187 PYQLIVAET-------------------------------------------PTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEEEEET-------------------------------------------TTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEEC-------------------------------------------CCCeEEEEECCCCCccccceEEEECCCC
Confidence 987766422 12578888876 44421 11102222
Q ss_pred --CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCC
Q 004141 240 --LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 316 (771)
Q Consensus 240 --~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~ 316 (771)
..+..+++++||+ |++... ....|+++|. ++++ ...+....
T Consensus 224 ~~~~p~~i~~d~~G~-----l~v~~~--------------~~~~i~~~d~-----------------~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPF 267 (314)
T ss_dssp SSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSS
T ss_pred CCCCCCceEECCCCC-----EEEEEc--------------CCCEEEEEcC-----------------CCCcEeEEEeCCC
Confidence 3456789999986 665542 2237888887 5333 33333333
Q ss_pred ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 317 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 317 ~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
....+..|+|||+.|++..... ..|+++++...+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~----------~~l~~~~~~~~g 301 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRNG 301 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSCB
T ss_pred CCceeEEECCCCCEEEEEeCCC----------CeEEEEeCCCCC
Confidence 4577889999999876665442 358898876543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0039 Score=62.34 Aligned_cols=186 Identities=13% Similarity=0.091 Sum_probs=98.8
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
++.....|+++|.++|+...-...........+.++|||+ |++.. . ..|+.+|.
T Consensus 10 ~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-----ilvs~-~---------------~~V~~~d~----- 63 (276)
T 3no2_A 10 GGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-----ILFSY-S---------------KGAKMITR----- 63 (276)
T ss_dssp ECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-----EEEEC-B---------------SEEEEECT-----
T ss_pred eeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-----EEEeC-C---------------CCEEEECC-----
Confidence 3446689999999888865542122213567889999998 44432 1 14666664
Q ss_pred hhhhhhhhcCCCCCCcceecCCC-CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 293 EASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~-~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++....++... .....++.++|||+.|+-.... ..+|+.+|.++.....+
T Consensus 64 ------------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~Gk~l~~~------- 114 (276)
T 3no2_A 64 ------------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMKGEVLSKT------- 114 (276)
T ss_dssp ------------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTTSCEEEEE-------
T ss_pred ------------CCCEEEEEcCCCCccccccEECCCCCEEEEecCC----------CCEEEEEeCCCCEEEEE-------
Confidence 33333333322 1245678899999987654431 13567776532111110
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEE
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
.+. ......+ ......+.++||+.|+ +.. ....++.+|.+ |++..-.............++|+.+++..
T Consensus 115 -~~~-~~~~~~~-----~~~~~v~~~~~G~~lv-~~~--~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~ 183 (276)
T 3no2_A 115 -EFE-TGIERPH-----AQFRQINKNKKGNYLV-PLF--ATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACG 183 (276)
T ss_dssp -EEC-CSCSSGG-----GSCSCCEECTTSCEEE-EET--TTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECB
T ss_pred -ecc-CCCCccc-----ccccCceECCCCCEEE-Eec--CCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeC
Confidence 000 0000000 0123456788998664 332 33468888987 66543332222222345566777665433
Q ss_pred eCCCCCCeEEEEEeccc
Q 004141 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 ~~~~~p~~l~~~~~~~~ 468 (771)
. ..+++.++..++
T Consensus 184 ~----~~~v~~~d~~tG 196 (276)
T 3no2_A 184 D----AHCFVQLNLESN 196 (276)
T ss_dssp T----TSEEEEECTTTC
T ss_pred C----CCeEEEEeCcCC
Confidence 2 246777776544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.052 Score=54.96 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=24.0
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV 141 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 141 (771)
.....+++|||+ | |+.+.......++.++ .+++...+...
T Consensus 73 ~p~gia~~~dG~-l-~vad~~~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 73 KVSGLAFTSNGD-L-VATGWNADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEEEECTTSC-E-EEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CceeEEEcCCCc-E-EEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence 456688999998 4 4444322234577776 56665555544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0042 Score=64.36 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=36.3
Q ss_pred ccceEEEeCCCCCeEEEEecCC--CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPE--NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 169 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~ 169 (771)
.....++++|+|+ |.++.... .....++.++ .+++..+.+.++.... ........+.++|++..+++
T Consensus 67 ~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yv 136 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYI 136 (343)
T ss_dssp SCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEE
T ss_pred eEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEE
Confidence 4567889999986 54432210 0134677777 5566555555432110 01112357889988765544
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00074 Score=69.27 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=60.3
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 614 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 614 (771)
+..+.++++||.++. ...|......| ++.|+.+++++.. . ...++++.+.+...+... ..
T Consensus 44 ~~~~~l~~~hg~~g~--~~~~~~~~~~l---~~~v~~~~~~~~~----------~----~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRAA----------P----LDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCC--SGGGHHHHHHC---SSCEEEECCCTTS----------C----TTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhc---CCCEEEEECCCCC----------C----cCCHHHHHHHHHHHHHHh-CC
Confidence 345679999997654 34566666665 3999999998310 1 113444444433333321 12
Q ss_pred CCeEEEEEcChhHHHHHHHHhhCC---Cc---eeEEEecCCc
Q 004141 615 PSKVTVVGGSHGGFLTTHLIGQAP---DK---FVAAAARNPL 650 (771)
Q Consensus 615 ~~ri~l~G~S~GG~~a~~~a~~~p---~~---~~~~v~~~p~ 650 (771)
..++.++||||||.++..++.+.+ +. ++.+++.++.
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 357999999999999999887643 34 6777765553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.078 Score=59.41 Aligned_cols=163 Identities=12% Similarity=0.073 Sum_probs=102.8
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.......|.+.+.+|.+. +. ....|+.+. +++....++...... ..++++.+.++.|++. +.
T Consensus 349 ~~~~~ld~d~~~~~ly~s-D~--~~~~I~r~~~~g~~~~~v~~~~~~~---------p~GlAvD~~~~~lY~t-D~---- 411 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWT-DD--EVRAIRRSFIDGSGSQFVVTAQIAH---------PDGIAVDWVARNLYWT-DT---- 411 (619)
T ss_dssp SSEEEEEEETTTTEEEEE-ET--TTTEEEEEETTSCSCEEEECSSCSC---------CCEEEEETTTTEEEEE-ET----
T ss_pred CccEEEEEEcCCCeEEEE-eC--CCCeEEEEEcCCCccEEEEECCCCC---------cCceEEecccCcEEEE-eC----
Confidence 345677888888888665 32 234577777 444444444322111 1477888777777664 21
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
....|.+.++++...+.+. ...-..+..++..|....
T Consensus 412 --------------------------------------~~~~I~v~~~~G~~~~~l~-~~~l~~P~~iavdp~~G~---- 448 (619)
T 3s94_A 412 --------------------------------------GTDRIEVTRLNGTMRKILI-SEDLEEPRAIVLDPMVGY---- 448 (619)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEEE-CTTCCSEEEEEEETTTTE----
T ss_pred --------------------------------------CCCcEEEEeCCCCeEEEEE-ECCCCCeeeEEEEcCCCc----
Confidence 2368899999887766662 122235678889887554
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC-CCccccceeecCCCCEEEEEec
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
|+|+-|. ....|++.++ ++...+.|.. ........++++++++|++...
T Consensus 449 ly~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 449 MYWTDWG-------------EIPKIERAAL-----------------DGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEEecCC-------------CCCEEEEEcc-----------------CCCccEEEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 7766532 1237999998 5554444433 3445667899999999998875
Q ss_pred CCCCCCCCccccccceeeecCCCCC
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
.. ..|..+++++...
T Consensus 499 ~~----------~~I~~~~~dG~~~ 513 (619)
T 3s94_A 499 KT----------DKIEVMNTDGTGR 513 (619)
T ss_dssp TT----------TEEEEEESSSCCC
T ss_pred CC----------CEEEEEecCCCce
Confidence 43 4799999876543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.24 Score=49.18 Aligned_cols=169 Identities=9% Similarity=0.005 Sum_probs=91.3
Q ss_pred ceEEEEEccCCceeeccCCC-CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 218 PSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~-~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
..|+++|.+ ++...+. .+ ....+..+++.+||+ |++... ....|++++.
T Consensus 125 ~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~-----l~v~~~--------------~~~~i~~~~~--------- 174 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNA-----LWFTEN--------------QNNSIGRITN--------- 174 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSS-----EEEEET--------------TTTEEEEECT---------
T ss_pred CeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCC-----EEEEec--------------CCCeEEEECC---------
Confidence 578888887 5555442 22 233566788889886 665541 2236888885
Q ss_pred hhhhcCCCCCCcceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 297 LELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
. ++...+ ...........+++||+ |++.... ...|+++|. ++......
T Consensus 175 --------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~~--------- 224 (300)
T 2qc5_A 175 --------T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM----------GNKIGRITT-TGEISEYD--------- 224 (300)
T ss_dssp --------T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEEE---------
T ss_pred --------C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccC----------CCEEEEEcC-CCcEEEEE---------
Confidence 2 222222 22233466788899986 5554432 235888886 33321110
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCC--CCCceeeEEeecCCEEEEEEe
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~--~~~~~~~~~s~dg~~l~~~~~ 452 (771)
.+. .+ ..+..+++.++|+ |+++.. +...|++++. +++.+.+... ........++++|+ |++..
T Consensus 225 --~~~--~~-----~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~- 289 (300)
T 2qc5_A 225 --IPT--PN-----ARPHAITAGKNSE-IWFTEW--GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFAL- 289 (300)
T ss_dssp --CSS--TT-----CCEEEEEECSTTC-EEEEET--TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEEC-
T ss_pred --CCC--CC-----CCceEEEECCCCC-EEEecc--CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC-EEEEc-
Confidence 000 00 1223566788887 666542 2346888888 5676655332 22234455666765 44432
Q ss_pred CCCCCCeEEEEEe
Q 004141 453 SPVDVPQVKYGYF 465 (771)
Q Consensus 453 ~~~~p~~l~~~~~ 465 (771)
. . .|++++.
T Consensus 290 ~--~--~i~~~~p 298 (300)
T 2qc5_A 290 K--C--KIGKLNL 298 (300)
T ss_dssp S--S--EEEEEEE
T ss_pred c--C--ceEEeCC
Confidence 2 2 6776654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.043 Score=52.78 Aligned_cols=205 Identities=10% Similarity=0.077 Sum_probs=114.2
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
.+...|++ .+| |.+....+.+.+..++ ..++..+.+.++.... +...+++|++|+-+.
T Consensus 23 tqGL~~~~--~~L-yestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f----------geGi~~~~~~ly~lt-------- 81 (243)
T 3mbr_X 23 TEGLFYLR--GHL-YESTGETGRSSVRKVDLETGRILQRAEVPPPYF----------GAGIVAWRDRLIQLT-------- 81 (243)
T ss_dssp EEEEEEET--TEE-EEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----------EEEEEEETTEEEEEE--------
T ss_pred cccEEEEC--CEE-EEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----------eeEEEEeCCEEEEEE--------
Confidence 34567775 344 6666555677888888 7777777777655442 333555677766542
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
| ....++++|.++.++..- .+... .....++||+. |+
T Consensus 82 ----------------------------w-------~~~~v~v~D~~tl~~~~t--i~~~~--~Gwglt~dg~~----L~ 118 (243)
T 3mbr_X 82 ----------------------------W-------RNHEGFVYDLATLTPRAR--FRYPG--EGWALTSDDSH----LY 118 (243)
T ss_dssp ----------------------------S-------SSSEEEEEETTTTEEEEE--EECSS--CCCEEEECSSC----EE
T ss_pred ----------------------------e-------eCCEEEEEECCcCcEEEE--EeCCC--CceEEeeCCCE----EE
Confidence 1 237899999998876544 22221 23456789886 65
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecC--CCCcc---ccceeecCCCCEEEE
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT--ESISS---AFFPRFSPDGKFLVF 333 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt--~~~~~---~~~p~~SpDG~~l~f 333 (771)
. ++ ....|+.+|. ++.+. .++. ..... .....|. +|+ | |
T Consensus 119 v-Sd--------------gs~~l~~iDp-----------------~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l-y 163 (243)
T 3mbr_X 119 M-SD--------------GTAVIRKLDP-----------------DTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L-L 163 (243)
T ss_dssp E-EC--------------SSSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TTE-E-E
T ss_pred E-EC--------------CCCeEEEEeC-----------------CCCeEEEEEEEccCCcccccceeeEEe-CCE-E-E
Confidence 4 42 3347999997 55432 2332 21111 1223343 665 4 4
Q ss_pred EecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
...-. ...|.++|.++++.... -++..+.........+ -...+..++|.|++++||++. ..+.
T Consensus 164 anvw~---------s~~I~vIDp~tG~V~~~----idl~~l~~~~~~~~~~--~~~vlNGIA~d~~~~~lfVTG--K~wp 226 (243)
T 3mbr_X 164 ANVWL---------TSRIARIDPASGKVVAW----IDLQALVPDADALTDS--TNDVLNGIAFDAEHDRLFVTG--KRWP 226 (243)
T ss_dssp EEETT---------TTEEEEECTTTCBEEEE----EECGGGSTTTTSCCCT--TSSCEEEEEEETTTTEEEEEE--TTCS
T ss_pred EEECC---------CCeEEEEECCCCCEEEE----EECCcCccccccccCC--cCCceEEEEEcCCCCEEEEEC--CCCC
Confidence 33221 35799999988875211 0000010000000000 001245789999999887764 4567
Q ss_pred EEEEEECC
Q 004141 414 VIISVNVS 421 (771)
Q Consensus 414 ~l~~~d~~ 421 (771)
.||.|.+.
T Consensus 227 ~~~~v~~~ 234 (243)
T 3mbr_X 227 MLYEIRLT 234 (243)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEe
Confidence 88887753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.022 Score=55.31 Aligned_cols=144 Identities=10% Similarity=-0.018 Sum_probs=76.6
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...++++|.++.++..- ++.. ......++||+. |+ +++ ....|+.+|.
T Consensus 115 ~~~v~V~D~~Tl~~~~t--i~~~--~eGwGLt~Dg~~----L~-vSd--------------Gs~~l~~iDp--------- 162 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERT--TRYS--GEGWGLCYWNGK----LV-RSD--------------GGTMLTFHEP--------- 162 (268)
T ss_dssp SCEEEEEETTTTEEEEE--EECS--SCCCCEEEETTE----EE-EEC--------------SSSEEEEECT---------
T ss_pred CCEEEEEECCcCcEEEE--EeCC--CceeEEecCCCE----EE-EEC--------------CCCEEEEEcC---------
Confidence 37899999998876544 2222 122455678875 54 442 3348999997
Q ss_pred hhhhcCCCCCCcc-eecC--CCCcc---ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 297 LELKESSSEDLPV-VNLT--ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 297 ~~~~~~~~~~~~~-~~lt--~~~~~---~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
++.+. .++. ..... .....|. ||+ |+ ...-. ...|.++|.++++..... +
T Consensus 163 --------~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-ly-anvw~---------s~~I~vIDp~TG~V~~~I----d 218 (268)
T 3nok_A 163 --------DGFALVGAVQVKLRGQPVELINELECA-NGV-IY-ANIWH---------SSDVLEIDPATGTVVGVI----D 218 (268)
T ss_dssp --------TTCCEEEEEECEETTEECCCEEEEEEE-TTE-EE-EEETT---------CSEEEEECTTTCBEEEEE----E
T ss_pred --------CCCeEEEEEEeCCCCcccccccccEEe-CCE-EE-EEECC---------CCeEEEEeCCCCcEEEEE----E
Confidence 55443 2222 22111 2234555 774 54 43321 357999999888752110 0
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEEC
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 420 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~ 420 (771)
+..+.........+ ....+..++|.|++++||++. ..+..||.|.+
T Consensus 219 l~~L~~~~~~~~~~--~~~vlNGIA~dp~~~rlfVTG--K~Wp~~~ev~~ 264 (268)
T 3nok_A 219 ASALTRAVAGQVTN--PEAVLNGIAVEPGSGRIFMTG--KLWPRLFEVRL 264 (268)
T ss_dssp CHHHHHHHTTTCCC--TTCCEEEEEECTTTCCEEEEE--TTCSEEEEEEE
T ss_pred CCCCcccccccccC--cCCceEEEEEcCCCCEEEEeC--CCCCceEEEEE
Confidence 00000000000000 001245789999999887754 45678887764
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.016 Score=62.05 Aligned_cols=158 Identities=15% Similarity=0.257 Sum_probs=91.3
Q ss_pred cceEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
....++++| ++..|.+ .+.. ..++.++ .++....+....... ..++|++||++|+...... .
T Consensus 138 ~P~~lavdp~~~g~Lyv-~d~~---~~I~~id~~~~~v~~~~~~~~~P----------~~ia~d~~G~~lyvad~~~-~- 201 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYL-VGEQ---HPTRLIDFEKEYVSTVYSGLSKV----------RTICWTHEADSMIITNDQN-N- 201 (430)
T ss_dssp CCCEEEEETTEEEEEEE-EEBT---EEEEEEETTTTEEEEEECCCSCE----------EEEEECTTSSEEEEEECCS-C-
T ss_pred CCCEEEECCCCCCeEEE-EeCC---CcEEEEECCCCEEEEEecCCCCc----------ceEEEeCCCCEEEEEeCCC-C-
Confidence 456788999 5666644 4432 4577777 444444443321122 4899999999665543211 0
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCce--eeccCCCCCCccceEEEecCCCCCc
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~--~~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
.....+++++.+++-. +.+ ..-.....++++|++..
T Consensus 202 -------------------------------------~~~~~v~~~~~~g~~~~~~~l---~~~~~p~giavdp~~g~-- 239 (430)
T 3tc9_A 202 -------------------------------------NDRPNNYILTRESGFKVITEL---TKGQNCNGAETHPINGE-- 239 (430)
T ss_dssp -------------------------------------TTSEEEEEEEGGGTSCSEEEE---EECSSCCCEEECTTTCC--
T ss_pred -------------------------------------cccceEEEEeCCCceeeeeee---ccCCCceEEEEeCCCCE--
Confidence 0123456666554322 222 11224567889996555
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC--CCccccceeecCCCCEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVF 333 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~~~~~~~p~~SpDG~~l~f 333 (771)
|+++.+ ....|++++. +++....+.. ........+|+|||++|++
T Consensus 240 --lyv~d~--------------~~~~V~~~~~-----------------~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 240 --LYFNSW--------------NAGQVFRYDF-----------------TTQETTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp --EEEEET--------------TTTEEEEEET-----------------TTTEEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred --EEEEEC--------------CCCEEEEEEC-----------------CCCcEEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 777652 2347999997 5554423321 1223567899999998877
Q ss_pred EecCCCCCCCCccccccceeeecCC
Q 004141 334 LSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 334 ~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
..... .+|++++.+.
T Consensus 287 ~d~~~----------~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQ----------HYILRSDYDW 301 (430)
T ss_dssp EETTT----------TEEEEEEEET
T ss_pred EECCC----------CEEEEEeCCc
Confidence 76442 5688877654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.16 Score=52.15 Aligned_cols=109 Identities=15% Similarity=0.014 Sum_probs=63.5
Q ss_pred CceEEEEEccCCceeeccCCCC--CCccceEEEecCCCCCccEEEEEee--cCcceeeee-eeeccCCceeEEEeccccc
Q 004141 217 QPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVGW--SSETRKLGI-KYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~--~~~~~~~~wspDg~~~~~~l~~~~~--~~~~~~~g~-~~~~~~~~~l~~~d~~~~~ 291 (771)
...||.++.+++..+.+....+ -....+....+||+ +++... ..++..... .+.....+.||+++.
T Consensus 140 ~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-----fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~---- 210 (355)
T 3sre_A 140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP---- 210 (355)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----
T ss_pred eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-----EEecCCcEeCCcccccchhhccCCccEEEEEEC----
Confidence 3567778877665554421111 22566888999987 555432 111100000 000012357899874
Q ss_pred chhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 292 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
++.+.+.........++|||||++|++.... ..+|++++++..
T Consensus 211 ---------------~~~~~~~~~l~~pNGia~spDg~~lYvadt~----------~~~I~~~~~~~~ 253 (355)
T 3sre_A 211 ---------------NDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHAN 253 (355)
T ss_dssp ---------------TCCEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTT
T ss_pred ---------------CeEEEeecCCcccCcceECCCCCEEEEEeCC----------CCeEEEEEECCC
Confidence 3455555444556789999999999887754 357999998643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 771 | ||||
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 9e-21 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 2e-18 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 5e-16 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 2e-15 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 8e-14 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 1e-12 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 1e-12 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-12 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 3e-11 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 7e-11 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-10 | |
| d1jjia_ | 311 | c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeogl | 2e-10 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-10 | |
| d1lzla_ | 317 | c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [Ta | 2e-08 | |
| d1vkha_ | 263 | c.69.1.32 (A:) Putative serine hydrolase Ydr428c { | 7e-08 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-07 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 1e-06 | |
| d1jkma_ | 358 | c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, | 2e-06 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 5e-06 | |
| d1u4na_ | 308 | c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus a | 6e-06 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-05 | |
| d1tqha_ | 242 | c.69.1.29 (A:) Carboxylesterase Est {Bacillus stea | 3e-05 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 3e-05 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 6e-05 | |
| d1wb4a1 | 273 | c.69.1.2 (A:803-1075) Feruloyl esterase domain of | 8e-05 | |
| d2h1ia1 | 202 | c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cer | 2e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 2e-04 | |
| d2r8ba1 | 203 | c.69.1.14 (A:44-246) Uncharacterized protein Atu24 | 3e-04 | |
| d1jfra_ | 260 | c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [Ta | 4e-04 |
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.6 bits (223), Expect = 9e-21
Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 14/237 (5%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 32 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 91
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ D + A+ ++ + ++V V G +GG+L+T+++ + +
Sbjct: 92 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPI 151
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
++ + ++ + +
Sbjct: 152 TDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPT-----------A 200
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
D ++ + + L + ++P++ H + +I +F + +
Sbjct: 201 DEKIHFQHTAELITQLIRGKANYSLQIYPDESHYFTSSSLKQHLYRSIINFFVECFR 257
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 84.8 bits (208), Expect = 2e-18
Identities = 34/253 (13%), Positives = 69/253 (27%), Gaps = 36/253 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR---------------------G 576
P +V G + F S+GY +++ R
Sbjct: 83 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 139
Query: 577 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 140 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 199
Query: 637 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696
+ LC+ V D + + ++ +D +
Sbjct: 200 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVN--- 256
Query: 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDF 756
++ K P +F +G D P S ++ ++P + H
Sbjct: 257 --FAARAKIPALFSVGLMDNICPPSTVFAAYNYY---AGPKEIRIYPYNNHEGGGSFQAV 311
Query: 757 ESFLNIGLWFKKY 769
E + KK
Sbjct: 312 EQV----KFLKKL 320
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 76.4 bits (186), Expect = 5e-16
Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 16/234 (6%)
Query: 538 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594
PL++ ++ GP S + + S+ + + RGS G++ + ++ ++G+
Sbjct: 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 92
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+V D + A MG + ++ + G S+GG++T+ ++G F A P+
Sbjct: 93 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWE 152
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
+ +S + + + + G
Sbjct: 153 YYDSVYTERYMGLPTPEDNLDH-------------YRNSTVMSRAENFKQVEYLLIHGTA 199
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
D V Q ++AL + GV+ + + + ++ HGI + + ++ + K+
Sbjct: 200 DDNVHFQQSAQISKALVDVGVDFQAMWYTDEDHGIASSTAHQHIYTHMSHFIKQ 253
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 75.6 bits (184), Expect = 2e-15
Identities = 43/248 (17%), Positives = 80/248 (32%), Gaps = 27/248 (10%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 593
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 594 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 644 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 703
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFD---IMNLADRV 257
Query: 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIG 763
K P + +G D P S L + ++ V+ H
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHL---ETKKELKVYRYFGHEYIPAFQT-----EKL 309
Query: 764 LWFKKYCK 771
+FK+ K
Sbjct: 310 AFFKQILK 317
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 70.2 bits (170), Expect = 8e-14
Identities = 33/242 (13%), Positives = 57/242 (23%), Gaps = 11/242 (4%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P + +GG + +YS S +L V G E Q+
Sbjct: 37 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 96
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
D + K + G G L L
Sbjct: 97 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 156
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
I + S K F H+ + L D R
Sbjct: 157 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSP---LHNVKLPEADDIQYPSMLLLTADHDDR 213
Query: 718 VPVSNGLQYARALREKGVETK-------VIVFPNDVHGIERPQSD-FESFLNIGLWFKKY 769
V + L++ L+ ++ + V HG +P + E ++ + +
Sbjct: 214 VVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARC 273
Query: 770 CK 771
Sbjct: 274 LN 275
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 50/234 (21%), Positives = 92/234 (39%), Gaps = 14/234 (5%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 40 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 99
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 657
DV A + GLA+ + + P F A A + + M
Sbjct: 100 EDVSAAARWARESGLASELYIMGYSYGGYMT--LCALTMKPGLFKAGVAGASVVDWEEMY 157
Query: 658 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 717
+D ++E ++ S+SPI+H+ ++K P + D R
Sbjct: 158 ELSDAAFRNFIEQLTGGSRE------------IMRSRSPINHVDRIKEPLALIHPQNDSR 205
Query: 718 VPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
P+ L+ L +G + + P+ H I + + L + +
Sbjct: 206 TPLKPLLRLMGELLARGKTFEAHIIPDAGHAINTMEDAVKILLPAVFFLATQRE 259
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 66.2 bits (160), Expect = 1e-12
Identities = 26/231 (11%), Positives = 50/231 (21%), Gaps = 46/231 (19%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
P++ +L G L ++ V Y+ +L F +
Sbjct: 44 PILYMLDGNAVMDRLDDELLKQ-LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRK 102
Query: 598 ND--------------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 637
D V + + + G S+GG +
Sbjct: 103 TDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSS 162
Query: 638 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697
+ + +P + + ++
Sbjct: 163 SYFR-SYYSASPSLGRGYDALLSRVTAVEPLQ------------------------FCTK 197
Query: 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+ T +S L++KGV FPN HG
Sbjct: 198 HLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKDKGVNAVFWDFPNLGHG 248
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 66.6 bits (162), Expect = 2e-12
Identities = 20/150 (13%), Positives = 36/150 (24%), Gaps = 15/150 (10%)
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE--S 670
NP+ V+V G + GG++ L D F P C
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAG-----------GPYDCARNQYY 56
Query: 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARAL 730
+ + ++ + S + + G+ D V + Q L
Sbjct: 57 TSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQL 116
Query: 731 REK--GVETKVIVFPNDVHGIERPQSDFES 758
+ VH +
Sbjct: 117 GNFDNSANVSYVTTTGAVHTFPTDFNGAGD 146
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 62.1 bits (149), Expect = 3e-11
Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 34/238 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
L++ LHG S L + G+ LL + S + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 598 NDVLT----AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
L A + + + GGS G F+ L+ + A +
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM 142
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
L G + + + P + L G+
Sbjct: 143 KLPQGQVVEDPGVL---------------------ALYQAPPATRGEAYGGVPLLHLHGS 181
Query: 714 QDLRVPVSNGLQYARALREKGVETKV--IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
+D VP++ + ALR E ++ V H + + + +
Sbjct: 182 RDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLTP-----LMARVGLAFLEHW 234
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 61.9 bits (149), Expect = 7e-11
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
I++ G + ++ +LS+ G+ + + +G ++ G +
Sbjct: 33 NTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 598 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---------RN 648
V + + ++ S + +I F+ A
Sbjct: 91 CTVYHWLQTK------GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEK 144
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
L L + ++P+ E + + + S + ++ P I
Sbjct: 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH---WDTLDSTLDKVANTSVPLI 201
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLN 761
D V + + K+ H + +F
Sbjct: 202 AFTANNDDWVKQEEVYDMLAHI--RTGHCKLYSLLGSSHDLGENLVVLRNFYQ 252
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 61.9 bits (149), Expect = 1e-10
Identities = 33/277 (11%), Positives = 71/277 (25%), Gaps = 50/277 (18%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
+ ++ P+ + + + G++ + V G+ Q +
Sbjct: 108 KELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQI 162
Query: 598 NDVLTAIDHVIDMGLANPS--------------KVTVVGGSHGGFLTTHLIGQAPDKFVA 643
+ ID + A S KV + G S+ G + +
Sbjct: 163 YSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLEL 222
Query: 644 AAARNPLCNLALMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR---------- 690
A + + G P E +++ + D +
Sbjct: 223 ILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282
Query: 691 ----------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734
+H ++ + + KVK + + G QD V + +AL +G
Sbjct: 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALP-EG 341
Query: 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771
+ H + I +F
Sbjct: 342 HAKHAFLHRGA-HIYMNSWQSIDFSETINAYFVAKLL 377
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.5 bits (145), Expect = 2e-10
Identities = 40/217 (18%), Positives = 69/217 (31%), Gaps = 16/217 (7%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595
P++V HGG + +L + +++ V+YR + P V
Sbjct: 80 PVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH------KFPAAV--Y 131
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
D D + + +PSK+ V G S GG L + A D L +
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVV 191
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTES----PSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ E + + S E+ S I + P + +
Sbjct: 192 NFVAPTPSLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIIT 251
Query: 712 GAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
D G + + LR GVE ++ + +HG
Sbjct: 252 AEYD--PLRDEGEVFGQMLRRAGVEASIVRYRGVLHG 286
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.2 bits (142), Expect = 5e-10
Identities = 33/228 (14%), Positives = 58/228 (25%), Gaps = 22/228 (9%)
Query: 538 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPGK 591
P + +L G S + + + G S+++ S + + A +
Sbjct: 35 PALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94
Query: 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651
+ + P+ VVG S L P +FV A A + L
Sbjct: 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLL 154
Query: 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 711
+ + +G T + G R + + T
Sbjct: 155 DPSQAMGPTL--IGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYC 212
Query: 712 GAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 745
G N L ++ A G V FP+
Sbjct: 213 GNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAGGGHNGVFDFPDS 260
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Score = 54.5 bits (129), Expect = 2e-08
Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 9/144 (6%)
Query: 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--------DIPD 664
+PS++ V G S GG L + +A D+ V A L L D P
Sbjct: 148 IDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNFVDTPL 207
Query: 665 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724
W + S ED +P P +L +L G+
Sbjct: 208 WHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTM-ELDPLRDEGI 266
Query: 725 QYARALREKGVETKVIVFPNDVHG 748
+YA L + GV ++ FP HG
Sbjct: 267 EYALRLLQAGVSVELHSFPGTFHG 290
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.2 bits (123), Expect = 7e-08
Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 30/229 (13%)
Query: 537 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 589
++ +HGG + + ++ + + Y + P
Sbjct: 31 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEY-----------RLSP 79
Query: 590 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649
+++ D ++ I ++ + + +VG S G ++ D +
Sbjct: 80 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 137
Query: 650 LCNLALMVGTTDIPDWC----------YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH 699
L + Y E E+
Sbjct: 138 QMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEEEPSRVMPYVKKA 197
Query: 700 ISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748
+S+ + D + + L++ + K+ + +H
Sbjct: 198 LSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 27/207 (13%), Positives = 47/207 (22%), Gaps = 30/207 (14%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 596
PL V+L G + S+ L L+ V LP
Sbjct: 45 PLAVLLDGEFWAQSMPV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLA 103
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 656
V L + VI + V G S GG + P++F +++
Sbjct: 104 VQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 163
Query: 657 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 716
G + + +S + G ++
Sbjct: 164 GGQQEGVLLEKL---------------------------KAGEVSAEGLRIVLEAGIREP 196
Query: 717 RVPVSNGLQYARALREKGVETKVIVFP 743
+ +N L
Sbjct: 197 MIMRAN-QALYAQLHPIKESIFWRQVD 222
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL 578
+ + + + + GY + + RG
Sbjct: 52 RNAPILLTRTPYNAKGR------ANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKY 105
Query: 579 GFGEE-----ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 633
G + + + D +D ++ + +V + G S+ GF
Sbjct: 106 GSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMA 165
Query: 634 IGQAPDKFVAAAARNPLCNL 653
+ AA +P+ +
Sbjct: 166 LLDPHPALKVAAPESPMVDG 185
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} Length = 358 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 17/142 (11%)
Query: 622 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 681
G S GG L A + A ++ + G + S ++
Sbjct: 188 GESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAWDHERRLTELPSLVENDGYF 247
Query: 682 SPSV---------------EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQY 726
+ + + P + + D G+ +
Sbjct: 248 IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELD--PLRDEGIAF 305
Query: 727 ARALREKGVETKVIVFPNDVHG 748
AR L GV+ V VHG
Sbjct: 306 ARRLARAGVDVAARVNIGLVHG 327
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 538 PLIVVLH----GGPHSVSLSSYSKSL-----AFLSSVGYSLLIVNYRGSLGFGEE----- 583
P+++ G S + K L GY + + RG G +
Sbjct: 51 PIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTR 110
Query: 584 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 643
L+ D ID ++ + KV ++G S+ GF +
Sbjct: 111 PLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170
Query: 644 AAARNPLCNL 653
A +P+ +
Sbjct: 171 AVPESPMIDG 180
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Score = 46.4 bits (108), Expect = 6e-06
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+D D L I +P+++ V G S GG L A ++ A A L +
Sbjct: 124 EDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPS 183
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTES------PSVEDLTRFHSKSPISHISKVKTPTI 708
P + G + S+E+LT + P
Sbjct: 184 TGYDPAHPPASIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDLSGLPPAY 243
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-----PQSDFESFLNIG 763
D G YA AL + GV+ ++ F + +HG + P + ++ + I
Sbjct: 244 IATAQYD--PLRDVGKLYAEALNKAGVKVEIENFEDLIHGFAQFYSLSPGAT-KALVRIA 300
Query: 764 LWFKKY 769
+
Sbjct: 301 EKLRDA 306
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)
Query: 537 DPLIVVLHG---GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593
+ +L GP + + ++ L+ G S++ G+ Q +
Sbjct: 27 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQWD 85
Query: 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+ ++ D + P VG + GG+ L PD+F A + +
Sbjct: 86 TFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+ ++ +G + +P + S +++ T
Sbjct: 143 SNTTTNG--AIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPT 200
Query: 714 QDLRVPVSNGL-----------QYARALREKGVETKVIVFPND 745
+ + + R G FP
Sbjct: 201 NPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHNGHFDFPAS 243
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 19/221 (8%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
+ +++LHG + + FL S GY+ Y+G EE V +
Sbjct: 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKGHGVPPEE-------LVHTGP 61
Query: 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------FVAAAARN 648
+ ++ + K+ V G S GG + L P + +
Sbjct: 62 DDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEET 121
Query: 649 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 708
+ + E + + + H+ + PT
Sbjct: 122 MYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYAPTF 181
Query: 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749
+ D + + + + + + H I
Sbjct: 182 VVQARHDEMINPDSANIIYNEIESPVKQ--IKWYEQSGHVI 220
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 44.3 bits (104), Expect = 3e-05
Identities = 27/203 (13%), Positives = 54/203 (26%), Gaps = 34/203 (16%)
Query: 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 599
I+++ G + S S + + +GY+ ++ + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF-MLND----------TQVNTEY 82
Query: 600 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD------KFVAAAARNPLCNL 653
++ AI + N K+ V+ S GG + + P + +A A
Sbjct: 83 MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY----- 135
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
GT + T S L + V T ++ A
Sbjct: 136 ---KGTVLAGPLDALAVSAPSVWQQTTGSALTTALRNAGGLTQ-----IVPTTNLY--SA 185
Query: 714 QDLRVPVSNGLQYARALREKGVE 736
D V + +
Sbjct: 186 TDEIVQPQVSNSPLDSSYLFNGK 208
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 6e-05
Identities = 28/229 (12%), Positives = 55/229 (24%), Gaps = 22/229 (9%)
Query: 537 DPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPG 590
+ +L G + + + G S+++ S + + + +
Sbjct: 29 PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88
Query: 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650
+ + +P+ VG S G L P +F AA+ +
Sbjct: 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGF 148
Query: 651 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 710
N + T + G +S S R I + T
Sbjct: 149 LNPSESWWPT--LIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVY 206
Query: 711 LGAQDLRVPVSNGL--------------QYARALREKGVETKVIVFPND 745
G + + + G V FP +
Sbjct: 207 CGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPN 255
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 20/220 (9%), Positives = 48/220 (21%), Gaps = 29/220 (13%)
Query: 538 PLIVVLHGGPHSVS---------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588
+ ++HGG + + + ++ ++ + G + Q
Sbjct: 56 NIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEF 115
Query: 589 PGKVGS-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 647
V + A A+ G + GG T +++ D
Sbjct: 116 RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 175
Query: 648 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT 707
+ G + + ++ SK + +
Sbjct: 176 SG----DYWYGNSPQDKANSIAEAINRSGL---------------SKREYFVFAATGSED 216
Query: 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747
I + + +V P H
Sbjct: 217 IAYANMNPQIEAMKALPHFDYTSDFSKGNFYFLVAPGATH 256
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 49/233 (21%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ- 595
P++++LHG G + + L ++ + +SV V G F + + +
Sbjct: 15 PVLLLLHGTGGNELDLLPLAEIVDSEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIF 74
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
++ +D + + + +G S+G + L+ + A +P+
Sbjct: 75 RTKELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG 134
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715
M ++ + D
Sbjct: 135 MQLANLAGKSVFIAAG-----------------------------------------TND 153
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768
+ + L + H + + E W+ K
Sbjct: 154 PICSSAESEELKVLLENANANVTMHWENRG-HQL--TMGEVEKAKE---WYDK 200
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 33/226 (14%), Positives = 58/226 (25%), Gaps = 46/226 (20%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNY-RGSLGFGEEALQSLPGKVGSQ 595
+ +LHG G +L ++ +A +++ + + G F K
Sbjct: 24 ECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILA 83
Query: 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655
+ + N T +G S+G L + L+ P AA P+ L
Sbjct: 84 ETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH 143
Query: 656 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQD 715
+ T + + GA D
Sbjct: 144 VPATDLAGIRTLI-----------------------------------------IAGAAD 162
Query: 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESFL 760
L G E + P+ H I P + +L
Sbjct: 163 ETYG-PFVPALVTLLSRHGAEVDARIIPSG-HDIGDPDAAIVRQWL 206
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 33/235 (14%), Positives = 64/235 (27%), Gaps = 53/235 (22%)
Query: 538 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596
PL V+LHG G + L +++ L V G ++ G D
Sbjct: 18 PLFVLLHGTGGDENQFFDFGARLLPQATI---LSPVGDVSEHGAARFFRRTGEGVYDMVD 74
Query: 597 VNDVLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 654
+ + I V +G S+G + +++ + P+ F AA +PL
Sbjct: 75 LERATGKMADFIKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFE 134
Query: 655 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 714
+ + + +
Sbjct: 135 PKISPAKPTRRVLITAG-----------------------------------------ER 153
Query: 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKY 769
D PV +L+ +G + + P H I + ++ + Y
Sbjct: 154 DPICPVQLTKALEESLKAQGGTVETVWHPGG-HEI--RSGEIDAVRG---FLAAY 202
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 66/237 (27%)
Query: 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 597
+V+ G S S + L+S G+ + ++ +L +
Sbjct: 53 GAVVISPGFTAYQS--SIAWLGPRLASQGFVVFTIDTNTTLDQPD------------SRG 98
Query: 598 NDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 653
+L+A+D++ + +++ V+G S GG
Sbjct: 99 RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGG------------------------GG 134
Query: 654 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 713
+L + + + +++TPT+ +
Sbjct: 135 SLEAAKSRTSLKAAI---------------------PLTGWNTDKTWPELRTPTLVVGAD 173
Query: 714 QDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGL-WFKKY 769
D PV+ + ++ + H + + W K++
Sbjct: 174 GDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRF 228
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 771 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.93 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.92 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.92 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.91 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.9 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.9 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.87 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.86 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.86 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.84 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.84 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.83 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.83 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.82 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.82 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.82 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.82 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.82 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.81 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.81 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.8 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.8 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.79 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.79 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.79 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.78 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.78 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.77 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.77 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.77 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.77 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.77 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.76 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.75 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.74 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.74 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.74 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.74 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.73 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.73 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.73 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.73 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.73 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.73 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.72 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.72 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.72 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.7 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.7 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.7 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.69 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.69 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.68 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.67 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.67 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.66 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.66 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.66 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.65 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.64 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.58 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.55 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.53 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.52 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.49 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.48 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.44 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.43 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.42 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.41 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.41 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 99.41 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.4 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.34 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.33 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 99.32 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.32 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 99.3 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.3 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.29 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.27 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.26 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.24 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.24 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.22 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.18 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 99.15 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 99.15 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.12 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 99.12 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.11 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.11 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.1 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.09 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.06 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.06 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.06 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.05 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.03 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.01 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.01 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.98 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.98 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.92 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.87 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.86 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.86 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.85 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.84 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.84 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.78 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.77 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.76 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.75 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.71 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.7 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.7 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.69 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.66 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.63 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 98.62 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.59 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.56 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.55 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.54 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.53 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.53 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.51 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.44 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.42 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.38 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.35 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.26 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.21 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.21 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.15 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.11 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.09 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.06 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.04 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 98.01 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 98.01 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.91 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.79 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 97.77 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.67 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.62 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.56 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.55 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.39 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.38 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.36 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 97.25 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.24 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.89 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 96.86 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.84 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.74 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.59 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.86 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 95.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.46 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.2 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.83 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.82 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 89.43 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 88.99 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 88.33 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 87.71 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 87.43 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 86.94 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 84.15 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 81.48 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=4.3e-32 Score=272.93 Aligned_cols=244 Identities=23% Similarity=0.360 Sum_probs=208.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
.+.+.||.+|+++++.|++ ..++.|+||++|||++......|...+..|+++||+|+++|+|+.+++|.++.......
T Consensus 16 ~~~s~dG~~i~~~l~~p~~--~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~~~~~~~~ 93 (260)
T d2hu7a2 16 WVESFDGSRVPTYVLESGR--APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGD 93 (260)
T ss_dssp EEECTTSCEEEEEEEEETT--SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHHHHTTTTC
T ss_pred EEECCCCCEEEEEEEeCCC--CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccccccccccc
Confidence 4567789999999999975 45678999999998877666778888999999999999999999999999988877777
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
++..+++|+.++++++.++. +..+++|+|+|+||.+++.++..+|+.+++++..+|+.++..+..........+....
T Consensus 94 ~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T d2hu7a2 94 PCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQL 171 (260)
T ss_dssp TTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCHHHHHHHHHH
T ss_pred cchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcccccccccccccc
Confidence 77788999999999999874 6789999999999999999999999999999999999887765543322111111111
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER 751 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~ 751 (771)
.....+.+...+|...++++++|+|++||+.|.+||++++.+++++|+++|+++++++||+++|++..
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~~~~~~~~~~~~g~~H~~~~ 239 (260)
T d2hu7a2 172 ------------TGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLARGKTFEAHIIPDAGHAINT 239 (260)
T ss_dssp ------------HCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHHTTCCEEEEEETTCCSSCCB
T ss_pred ------------cccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHHCCCCeEEEEECcCCCCCCC
Confidence 01234667788999999999999999999999999999999999999999999999999999999987
Q ss_pred CCChHHHHHHHHHHHHHhhC
Q 004141 752 PQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 752 ~~~~~~~~~~i~~fl~~~L~ 771 (771)
.++..+++..+++||.+|||
T Consensus 240 ~e~~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 240 MEDAVKILLPAVFFLATQRE 259 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhc
Confidence 77778899999999999985
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.3e-32 Score=271.97 Aligned_cols=242 Identities=17% Similarity=0.255 Sum_probs=190.0
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-CCcc--hHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~-~~~~--~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
.+.+|.+|+++++.|++++.++++|+||++|||++... ...| ......|+++||+|+++||||++++|..+......
T Consensus 8 i~~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~ 87 (258)
T d1xfda2 8 IEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRR 87 (258)
T ss_dssp EEETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTT
T ss_pred EeeCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhc
Confidence 34589999999999999888889999999999865432 2223 34566789999999999999999999988887777
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCCcch
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWC 666 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~~~~ 666 (771)
+++..+..|+.++++++.+++.+|++||+++|+|+||+++++++...++ .+++.+..+|+....... ...
T Consensus 88 ~~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 161 (258)
T d1xfda2 88 RLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA------SAF 161 (258)
T ss_dssp CTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB------HHH
T ss_pred cchhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccc------ccc
Confidence 8888889999999999999999999999999999999999988776543 567777666654321110 000
Q ss_pred hhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCC-CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC
Q 004141 667 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND 745 (771)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~ 745 (771)
....++. + ......+...++...+.++ ++|+|++||+.|.+||++++.+++++|++.|++++++++|++
T Consensus 162 ~~~~~~~---------~-~~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~~~~~~~~~~p~~ 231 (258)
T d1xfda2 162 SERYLGL---------H-GLDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIRGKANYSLQIYPDE 231 (258)
T ss_dssp HHHHHCC---------C-SSCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHHTTCCCEEEEETTC
T ss_pred ccccccc---------c-ccchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 0011111 0 0111234455666666665 689999999999999999999999999999999999999999
Q ss_pred CccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 746 VHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 746 ~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+|++........+++.+++||+++||
T Consensus 232 ~H~~~~~~~~~~~~~~~~~f~~~~~~ 257 (258)
T d1xfda2 232 SHYFTSSSLKQHLYRSIINFFVECFR 257 (258)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhhC
Confidence 99988777777788999999999986
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=2e-30 Score=260.44 Aligned_cols=246 Identities=17% Similarity=0.297 Sum_probs=200.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC---CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~---~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~ 588 (771)
.+...+|.++.+++++|+++++.+++|+||++|||++.... ..+......++++||+|+.+||||+++++..+.+..
T Consensus 7 ~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~~~~~~ 86 (258)
T d2bgra2 7 DFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI 86 (258)
T ss_dssp EEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGG
T ss_pred EEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchHHHHhh
Confidence 34456789999999999999888999999999997544322 233345567789999999999999998998888888
Q ss_pred CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 589 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
..+++..+..++.++++++.++..+++++|+++|+|+||.+++.++..+|+++++++..++......... ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 160 (258)
T d2bgra2 87 NRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS------VYTE 160 (258)
T ss_dssp TTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH------HHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccc------cccc
Confidence 8888888899999999999999889999999999999999999999999999999988887654332210 0000
Q ss_pred hhccCCCCccCCCCCChhhHHHHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
...+. .......+.+...+++..+.+++ +|+|++||++|.+||+.++++++++|+++|+++++++||+++|
T Consensus 161 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~~~~~~~~g~~H 232 (258)
T d2bgra2 161 RYMGL--------PTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVDFQAMWYTDEDH 232 (258)
T ss_dssp HHHCC--------CSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCCCEEEEETTCCT
T ss_pred hhccc--------ccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 11110 11224455667788888888775 7999999999999999999999999999999999999999999
Q ss_pred cCCCCCChHHHHHHHHHHHHHhhC
Q 004141 748 GIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
++........+++.+.+||+++|.
T Consensus 233 ~~~~~~~~~~~~~~i~~fl~~~l~ 256 (258)
T d2bgra2 233 GIASSTAHQHIYTHMSHFIKQCFS 256 (258)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHHHHHHHHHhc
Confidence 988777777889999999999974
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=2.9e-24 Score=217.80 Aligned_cols=250 Identities=20% Similarity=0.204 Sum_probs=186.7
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH-HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~-~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
.++..||.+|+++++.|++.+.++++|+||++|||++......+.. ....++..++.++..++++...++.........
T Consensus 11 ~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T d1qfma2 11 FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGIL 90 (280)
T ss_dssp EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred EEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccchhhhhcccc
Confidence 5667789999999999998888899999999999988765554433 444567788999999998877666665544444
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.......++...+..+...+...+..+++++|+|.||.++...+...++.+++++...++.++...........+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (280)
T d1qfma2 91 ANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYG 170 (280)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHC
T ss_pred cccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccccccceeccc
Confidence 44445566777777777777778889999999999999999999999999999999999887665543332222211111
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcC------cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh-------CCCCE
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE-------KGVET 737 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~s------p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~-------~g~~~ 737 (771)
. .............+ |+.......+|+||+||++|++||+.++++++++|++ .|+++
T Consensus 171 ~----------~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~~~~~~~~~ 240 (280)
T d1qfma2 171 C----------SDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPL 240 (280)
T ss_dssp C----------TTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTTSTTCCSCE
T ss_pred C----------CCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhhhhcCCCcE
Confidence 0 11123333333333 4444444456899999999999999999999999965 37789
Q ss_pred EEEEeCCCCccCCCCCC-hHHHHHHHHHHHHHhhC
Q 004141 738 KVIVFPNDVHGIERPQS-DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~L~ 771 (771)
+++++|++||++..+.. ..+.+.++++||++|||
T Consensus 241 ~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~ 275 (280)
T d1qfma2 241 LIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN 275 (280)
T ss_dssp EEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876533 34666789999999996
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.5e-23 Score=209.48 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=198.3
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 132 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~ 132 (771)
++|||+..... ++...+||++|+ ++.+.++|+..+ ..+..|+|||||++|||++... +..+++.+. .+
T Consensus 4 ~~iay~~~~~~---~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~ 72 (269)
T d2hqsa1 4 TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLAN 72 (269)
T ss_dssp CEEEEEEECSS---SSCCEEEEEEET--TSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTT
T ss_pred CeEEEEEEeCC---CCceEEEEEEcC--CCCCcEEEecCC-----CceeeeEECCCCCEEEEEEeec-cCcceeeeeccc
Confidence 68999876643 344568999775 566888888776 5578999999999999998876 667788888 55
Q ss_pred CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCccc
Q 004141 133 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 212 (771)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 212 (771)
+..++++...... ..+.|||||++|++.....
T Consensus 73 ~~~~~~~~~~~~~----------~~~~~spdg~~i~~~~~~~-------------------------------------- 104 (269)
T d2hqsa1 73 GAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT-------------------------------------- 104 (269)
T ss_dssp CCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT--------------------------------------
T ss_pred CceeEEeeeeccc----------ccceecCCCCeeeEeeecC--------------------------------------
Confidence 6666666554333 4889999999999986543
Q ss_pred CCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccc
Q 004141 213 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 292 (771)
Q Consensus 213 ~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 292 (771)
....+............. .........+.|+++++. +++++... ...+|+..++
T Consensus 105 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~------------g~~~i~~~~~----- 158 (269)
T d2hqsa1 105 ---GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI----- 158 (269)
T ss_dssp ---SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET-----
T ss_pred ---Cccceeecccccccceee--eecccccccccccccccc----ceeccccc------------CCceEeeeec-----
Confidence 224555566555555555 445555667899999998 88887432 2347999998
Q ss_pred hhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 293 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
+++...+++........|.|||||+.|+|.+.+. +...|++++..++..+.+....
T Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~---- 214 (269)
T d2hqsa1 159 ------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF---- 214 (269)
T ss_dssp ------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS----
T ss_pred ------------ccccceeeecccccccccccccccceeEEEeecC--------CceeeeEeecccccceEeecCc----
Confidence 7788888888888889999999999999999875 2467888987765543222111
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEee
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 442 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~ 442 (771)
....+.|||||+.|+|.+...+...||+++++++..++|+...+....+.|||
T Consensus 215 -----------------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 215 -----------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -----------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred -----------------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 12356899999999999998888999999999999999998877666677876
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=4.7e-24 Score=220.57 Aligned_cols=241 Identities=18% Similarity=0.178 Sum_probs=169.4
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
++...+|.+|+++++.|+ ..++.|+||++||+++. ...+...+..|+++||.|+++|+||.+.++..........
T Consensus 60 ~~~~~dg~~i~~~l~~P~---~~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~~~~~~~~~ 134 (318)
T d1l7aa_ 60 TYKSFGNARITGWYAVPD---KEGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEES---SCSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEECCCCcEEEEEEEecC---CCCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCCCCcccchhhh
Confidence 445567899999999998 46789999999997665 4467778889999999999999999766544332111111
Q ss_pred cc--------------ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc-chhhh
Q 004141 592 VG--------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM 656 (771)
Q Consensus 592 ~~--------------~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~-~~~~~ 656 (771)
.. ...+.|...+++++..++.+++.+++++|+|+||..++..+...++ ++++++..|.. +....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 213 (318)
T d1l7aa_ 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred hcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEEeccccccHHHH
Confidence 10 1124677888899999988999999999999999999999998765 55556555543 32222
Q ss_pred hcCCCCCcchhhhhccCCCCccCCCCC--ChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 657 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
........+.....+.. ..... ...........++...++++++|+|++||++|.+||++++.++++++ +
T Consensus 214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l---~ 285 (318)
T d1l7aa_ 214 IDVALEQPYLEINSFFR-----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHL---E 285 (318)
T ss_dssp HHHCCSTTTTHHHHHHH-----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHC---C
T ss_pred hhcccccccchhhhhhh-----ccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHc---C
Confidence 11111111110000000 00000 01112233445666778899999999999999999999999988776 4
Q ss_pred CCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 735 VETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
.++++++|++++|.+. .+..+++++||+++||
T Consensus 286 ~~~~l~~~~~~gH~~~-----~~~~~~~~~fl~~~Lk 317 (318)
T d1l7aa_ 286 TKKELKVYRYFGHEYI-----PAFQTEKLAFFKQILK 317 (318)
T ss_dssp SSEEEEEETTCCSSCC-----HHHHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCCc-----HHHHHHHHHHHHHhCC
Confidence 5789999999999764 4778899999999997
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=1.9e-23 Score=216.57 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=168.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~- 590 (771)
++.+.+|.+|+++++.|++ ..++.|+||++||++.... +......++++||.|+++|+||.+.++.........
T Consensus 59 ~~~s~dG~~l~~~l~~P~~--~~~~~P~Vv~~hG~~~~~~---~~~~~~~~a~~G~~v~~~D~rG~G~s~~~~~~~~~~~ 133 (322)
T d1vlqa_ 59 TFSGYRGQRIKGWLLVPKL--EEEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 133 (322)
T ss_dssp EEECGGGCEEEEEEEEECC--SCSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEECCCCcEEEEEEEeccC--CCCCccEEEEecCCCCCcC---cHHHHHHHHhCCCEEEEeeccccCCCCCCcccccccc
Confidence 4556678999999999985 4567899999999776532 223445788999999999999976654332111000
Q ss_pred --------------------CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 591 --------------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 591 --------------------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
......+.|+.++++++..++.+|++|++++|+|+||++++.++...+ +++++++.+|.
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~~a~v~~~~~ 212 (322)
T d1vlqa_ 134 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 212 (322)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-CccEEEEeCCc
Confidence 000112568899999999998899999999999999999999888765 58888877775
Q ss_pred cch-hhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHH
Q 004141 651 CNL-ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARA 729 (771)
Q Consensus 651 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~ 729 (771)
... ...........+.....+.. ............+...+|...+.++++|+|++||++|.++|++++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~~~~~ 287 (322)
T d1vlqa_ 213 LCHFRRAVQLVDTHPYAEITNFLK-----THRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 287 (322)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH-----HCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred cccHHHHHhhccccchhhHHhhhh-----cCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 432 22221111111111110000 000111233344556789999999999999999999999999998777765
Q ss_pred HHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 730 LREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 730 l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+ +.++++++||+++|... ........++||+++|+
T Consensus 288 ~---~~~~~l~~~p~~~H~~~----~~~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 288 Y---AGPKEIRIYPYNNHEGG----GSFQAVEQVKFLKKLFE 322 (322)
T ss_dssp C---CSSEEEEEETTCCTTTT----HHHHHHHHHHHHHHHHC
T ss_pred C---CCCeEEEEECCCCCCCc----cccCHHHHHHHHHHHhC
Confidence 5 56799999999999753 23344567899999985
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.90 E-value=2.6e-23 Score=217.56 Aligned_cols=229 Identities=15% Similarity=0.162 Sum_probs=162.0
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.+|.++++.|+ ..++.|+||++||.... ...+....+.|+++||+|+++|+|| +|.+.... ......
T Consensus 114 dg~~l~g~l~~P~---~~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D~~G---~G~s~~~~---~~~~~~ 182 (360)
T d2jbwa1 114 DGIPMPVYVRIPE---GPGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPG---QGEMFEYK---RIAGDY 182 (360)
T ss_dssp TTEEEEEEEECCS---SSCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTT---SGGGTTTC---CSCSCH
T ss_pred CCcccceEEEecC---CCCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEcccc---ccccCccc---cccccH
Confidence 5789999999997 46789999999996544 3456667888999999999999999 45443211 111112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (771)
..++..+++++.....+|++||+|+|+||||++++.++...| +++++|+.+|+.++....... ......+.
T Consensus 183 ~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~----~~~~~~~~---- 253 (360)
T d2jbwa1 183 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLET----PLTKESWK---- 253 (360)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSC----HHHHHHHH----
T ss_pred HHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhh----hhhhHHHH----
Confidence 345667788998888899999999999999999999999876 589999999887653221110 00000000
Q ss_pred ccCCCCCChhh--HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004141 677 DSFTESPSVED--LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 677 ~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
........+. .......+....+.++++|+|++||++|. +|++++..+++.+... +++++++++++|+... .
T Consensus 254 -~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~~~--~~~l~~~~~g~H~~~~--~ 327 (360)
T d2jbwa1 254 -YVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVPAE--HLNLVVEKDGDHCCHN--L 327 (360)
T ss_dssp -HHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSCGG--GEEEEEETTCCGGGGG--G
T ss_pred -HhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcCCC--CeEEEEECCCCcCCCc--C
Confidence 0011111111 12233445556788999999999999998 6999999999887543 4788899999997542 2
Q ss_pred hHHHHHHHHHHHHHhhC
Q 004141 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L~ 771 (771)
..+....+.+||.++|.
T Consensus 328 ~~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 328 GIRPRLEMADWLYDVLV 344 (360)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 33567889999999873
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8e-23 Score=221.30 Aligned_cols=341 Identities=14% Similarity=0.086 Sum_probs=208.3
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..||||+.|+|..+...+-+....+.+|++++... ...+|+.... .......+.|||||++|||+++.+ +|
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~--~~~~l~~~~~--~~~~l~~~~wSPDG~~iafv~~~n-----l~ 137 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFENN-----IY 137 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTC--CSCCCSBCCBCSSTTCEEEEETTE-----EE
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCC--ceeeccCccC--CccccceeeeccCCceEEEEecce-----EE
Confidence 45889999999876443333345678899888544 4445533221 113456799999999999998765 88
Q ss_pred EEe-cCCcceEEEecCC------cccccccCCCcc---cceeecCCCCeEEEEecCCCCCCCCccC-CCCCCCCCCccCC
Q 004141 128 ELW-SQSQLEKEFHVPQ------TVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSL-GSTKGGSSDKDCN 196 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~~~------~~~g~~~~~~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 196 (771)
.+. .++...++|.-.. +..+.+|.++.+ .++.|||||++|||...+..... .+.. ..........
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~-~~~~~~~~~~~~p~~--- 213 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP-IMELPTYTGSIYPTV--- 213 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC-EEEECCCSSSSSCCC---
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc-eeeccccccccccee---
Confidence 888 6677777775321 112233433322 36789999999999875543321 1111 0000000000
Q ss_pred CCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC-----CCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 197 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 197 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~-----~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
..+.| +..|+. .....|+++|++++..+.....+. +..+..+.|+||++. +++..++..
T Consensus 214 ---~~~~Y-p~~G~~---np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~----~~~~~nR~q----- 277 (465)
T d1xfda1 214 ---KPYHY-PKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ----- 277 (465)
T ss_dssp ---EEEEC-CBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS-----
T ss_pred ---eeeec-cccCCC---CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE----EEEEEcccc-----
Confidence 01111 111221 123579999999887654421111 223557899999985 665554433
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--C----ccccceeecCCCCEEEEEecCCCCCCCCc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--I----SSAFFPRFSPDGKFLVFLSAKSSVDSGAH 345 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--~----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~ 345 (771)
....|+.+|. .+++.+.+... . .....|.|+|||+.++|+.....
T Consensus 278 ------~~~~i~~~d~-----------------~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~------ 328 (465)
T d1xfda1 278 ------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ------ 328 (465)
T ss_dssp ------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC------
T ss_pred ------ccceEEEEcC-----------------CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee------
Confidence 2237888887 77776665422 1 12457999999999988754321
Q ss_pred cccccceeeec-------CCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--CeeEEE
Q 004141 346 SATDSLHRIDW-------PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVII 416 (771)
Q Consensus 346 ~~~~~l~~~d~-------~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~--~~~~l~ 416 (771)
.+..+++.+.+ .++..+++|.+..+|..+ +.|.++++.|||.+... ...+||
T Consensus 329 ~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-------------------~~~d~~~~~vyF~a~~~~p~~~hly 389 (465)
T d1xfda1 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-------------------LAYDEKGNKIYFLSTEDLPRRRQLY 389 (465)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-------------------EEEETTTTEEEEEESSSCTTCCEEE
T ss_pred cccCceEEEEeccccccCCCceeEEeccCCceEEEE-------------------EEEcCCCCEEEEEEeCCCCCceEEE
Confidence 12345665543 333446777776555432 25888999999988754 456899
Q ss_pred EEECCCCcEE-EecCC---CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 417 SVNVSSGELL-RITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 417 ~~d~~tg~~~-~l~~~---~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
+++++++... +|+.. .+.+....||+++++++..+++++.|++ .+.+..
T Consensus 390 ~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~-~~~~~~ 442 (465)
T d1xfda1 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMV-TVHNTT 442 (465)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCE-EEEETT
T ss_pred EEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeE-EEEECC
Confidence 9999876543 44422 2245567899999999999999998874 444433
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.87 E-value=1.4e-21 Score=194.64 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=147.2
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH
Q 004141 522 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 601 (771)
Q Consensus 522 ~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~ 601 (771)
.+.+|.|.+ ..+++.|+||++||++.. ...+...++.|+++||.|+++|+++..... .....|+.
T Consensus 38 ~~~ly~P~~-~~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~------------~~~~~d~~ 102 (260)
T d1jfra_ 38 GGTIYYPTS-TADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQP------------DSRGRQLL 102 (260)
T ss_dssp CEEEEEESC-CTTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCH------------HHHHHHHH
T ss_pred CEEEEEcCC-CCCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCc------------hhhHHHHH
Confidence 467889975 245678999999997655 345667889999999999999999843321 12357888
Q ss_pred HHHHHHHHc----CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCc
Q 004141 602 TAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 677 (771)
Q Consensus 602 ~~i~~l~~~----~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (771)
++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++|..+|...
T Consensus 103 ~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~------------------------- 156 (260)
T d1jfra_ 103 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNT------------------------- 156 (260)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeecccc-------------------------
Confidence 889998874 4589999999999999999999998865 6788887766421
Q ss_pred cCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHH
Q 004141 678 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFE 757 (771)
Q Consensus 678 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~ 757 (771)
.....++++|+|++||++|.++|+++..+.+......+.+.+++.+++++|++....+. .
T Consensus 157 -------------------~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~~~~~~~~~i~ga~H~~~~~~~~-~ 216 (260)
T d1jfra_ 157 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPGSLDKAYLELRGASHFTPNTSDT-T 216 (260)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCTTSCEEEEEETTCCTTGGGSCCH-H
T ss_pred -------------------cccccccccceeEEecCCCCCCCHHHHHHHHHHhcccCCCEEEEEECCCccCCCCCChH-H
Confidence 01124567999999999999999877555544455567789999999999987765554 6
Q ss_pred HHHHHHHHHHHhhC
Q 004141 758 SFLNIGLWFKKYCK 771 (771)
Q Consensus 758 ~~~~i~~fl~~~L~ 771 (771)
+.+.++.||+.||+
T Consensus 217 ~~~~~~~wl~~~L~ 230 (260)
T d1jfra_ 217 IAKYSISWLKRFID 230 (260)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 77889999999985
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.86 E-value=1.9e-21 Score=198.29 Aligned_cols=222 Identities=11% Similarity=0.111 Sum_probs=146.9
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...||..+++|.+.|++. ..+++++||++||.+.. ...|...+..|+++||.|+++|+||.. |.+.... .....
T Consensus 10 ~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~--~~~~~~~a~~L~~~G~~Vi~~D~rGh~--G~S~g~~-~~~~~ 83 (302)
T d1thta_ 10 RVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGSI-DEFTM 83 (302)
T ss_dssp EETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC-----------CCCH
T ss_pred EcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcch--HHHHHHHHHHHHHCCCEEEEecCCCCC--CCCCCcc-cCCCH
Confidence 456789999999999764 34578999999997655 346888999999999999999999942 2222111 11111
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC---CCCcchhhhh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVES 670 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~---~~~~~~~~~~ 670 (771)
....+|+.++++++..+ +.++++|+||||||.+++.+|.. ..++++|+.+|+.+........ ...... ...
T Consensus 84 ~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 157 (302)
T d1thta_ 84 TTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLSLP-IDE 157 (302)
T ss_dssp HHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGGSC-GGG
T ss_pred HHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccchhh-hhh
Confidence 23477899999999776 35789999999999999888764 4588999999988764321100 000000 000
Q ss_pred ccCCCCccCCCCCC-hhh-HHHH--hh----cCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 671 YGSKGKDSFTESPS-VED-LTRF--HS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 671 ~~~~~~~~~~~~~~-~~~-~~~~--~~----~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
.... . ....... ... .... .. .++...+.++++|+|++||++|.+||++.++++++.++. .+++++++
T Consensus 158 ~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s--~~~kl~~~ 233 (302)
T d1thta_ 158 LPND-L-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSL 233 (302)
T ss_dssp CCSE-E-EETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT--CCEEEEEE
T ss_pred cccc-c-cccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCC--CCceEEEe
Confidence 0000 0 0000000 000 0000 00 123456789999999999999999999999999887753 35899999
Q ss_pred CCCCccCCC
Q 004141 743 PNDVHGIER 751 (771)
Q Consensus 743 ~~~~H~~~~ 751 (771)
+|++|.+..
T Consensus 234 ~g~~H~l~e 242 (302)
T d1thta_ 234 LGSSHDLGE 242 (302)
T ss_dssp TTCCSCTTS
T ss_pred cCCCccccc
Confidence 999998763
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.86 E-value=8.6e-21 Score=180.95 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=143.1
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~---~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..++++.+..|... ...+.+++|++|+.+. ++....+...++.|+++||.|+.+||||.+.+...+ ....
T Consensus 17 ~G~l~~~~~~p~~~-~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~~------~~~~ 89 (218)
T d2fuka1 17 VGPLDVAVDLPEPD-VAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSF------DHGD 89 (218)
T ss_dssp TEEEEEEEECCCTT-SCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSCC------CTTT
T ss_pred CccEEEEEEcCCCC-CCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCcc------CcCc
Confidence 34799999988642 3345578889995332 211222445778899999999999999965543321 2233
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCC
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 674 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (771)
...+|+.++++++.++. +.++++++|+||||.+++.++.+. .++++|+.+|..+... .
T Consensus 90 ~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~-----------------~- 147 (218)
T d2fuka1 90 GEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD-----------------F- 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-----------------C-
T ss_pred chHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchh-----------------h-
Confidence 45889999999999874 567999999999999999888764 3678888888642110 0
Q ss_pred CCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCC
Q 004141 675 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~ 754 (771)
....+.+|+|+|||++|.++|+++..++++++. .+.+++++||++|.|.. .
T Consensus 148 ------------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~---~~~~l~~i~ga~H~f~~--~ 198 (218)
T d2fuka1 148 ------------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETLE---QQPTLVRMPDTSHFFHR--K 198 (218)
T ss_dssp ------------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCS---SCCEEEEETTCCTTCTT--C
T ss_pred ------------------------hccccccceeeEecCCCcCcCHHHHHHHHHHcc---CCceEEEeCCCCCCCCC--C
Confidence 001345799999999999999999888776553 35789999999998763 3
Q ss_pred hHHHHHHHHHHHHHhhC
Q 004141 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L~ 771 (771)
..+....+.+|++++|.
T Consensus 199 ~~~l~~~~~~~v~~~l~ 215 (218)
T d2fuka1 199 LIDLRGALQHGVRRWLP 215 (218)
T ss_dssp HHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34677889999999873
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.84 E-value=7e-20 Score=200.07 Aligned_cols=342 Identities=12% Similarity=0.018 Sum_probs=204.5
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCe
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 125 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 125 (771)
....||||++|+|..+...+-+....+.+|++++. +++..+++..+ ..+..++|||||++|||+++..
T Consensus 66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~--~~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~~~~----- 133 (470)
T d2bgra1 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLITEERIP-----NNTQWVTWSPVGHKLAYVWNND----- 133 (470)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCCC-----TTEEEEEECSSTTCEEEEETTE-----
T ss_pred eeEECCCCCEEEEEECCcceeeeccCceEEEEECC--CCcccccccCC-----ccccccccccCcceeeEeeccc-----
Confidence 44568899999998875554445567788998874 33555565554 6688999999999999997654
Q ss_pred EEEEe-cCCcceEEEecCCc------ccccccC---CCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccC
Q 004141 126 QFELW-SQSQLEKEFHVPQT------VHGSVYA---DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 195 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~------~~g~~~~---~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (771)
++.++ .++...+++..... ..+.+|. .+....+.|||||++|||...+......................
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCee
Confidence 77777 56666665542111 1111111 12235678999999999987654322110000000000000000
Q ss_pred CCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC----------CCCCCccceEEEecCCCCCccEEEEEeecC
Q 004141 196 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----------IPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 265 (771)
Q Consensus 196 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~----------~~~~~~~~~~~wspDg~~~~~~l~~~~~~~ 265 (771)
....+ +..|. ......++++++.++....+.. ...+..+..+.|+++++. +++...+.
T Consensus 214 ----~~~~~-~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~r~ 281 (470)
T d2bgra1 214 ----VRVPY-PKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (470)
T ss_dssp ----EEEEC-CBTTS---CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred ----eeecc-ccccc---cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce----eEEEeecc
Confidence 00000 01111 1133578999998887544410 112234457899999986 66655433
Q ss_pred cceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC------------CCccccceeecCCCCEE-E
Q 004141 266 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE------------SISSAFFPRFSPDGKFL-V 332 (771)
Q Consensus 266 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~------------~~~~~~~p~~SpDG~~l-~ 332 (771)
.... ...++.+|. .++....+.. .......|.|+++++.. +
T Consensus 282 ~~~~---------~~~~~~~d~-----------------~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 282 QNYS---------VMDICDYDE-----------------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp TTEE---------EEEEEEEET-----------------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCce---------EEEEEEecC-----------------CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEE
Confidence 3211 114555554 4444433321 11123578899988765 4
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC--
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-- 410 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~-- 410 (771)
+.+..+ | ..+||+++..++..++++.+...+.. .++.|++.|+|.+...
T Consensus 336 ~~s~~d----g----~~~ly~~~~~g~~~~~lt~g~~~v~~---------------------~~~~d~~~iyf~a~~~~~ 386 (470)
T d2bgra1 336 IISNEE----G----YRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEYKG 386 (470)
T ss_dssp EEECTT----S----CEEEEEEETTCSCCEESCCSSSCEEE---------------------EEEECSSEEEEEESCGGG
T ss_pred EEeccC----c----CceeEEEeccCCceeeeccCCeeEEE---------------------EEEECCCEEEEEEecCCC
Confidence 555443 2 56899999988888888766544322 2456778898887633
Q ss_pred --CeeEEEEEECCCC-cEEEecCC----CCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 411 --SSQVIISVNVSSG-ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 411 --~~~~l~~~d~~tg-~~~~l~~~----~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
...+||+++++++ +.++|+.. ...+....|||||++++..+++++.|+. .+....+
T Consensus 387 ~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~~~ 449 (470)
T d2bgra1 387 MPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSSVN 449 (470)
T ss_dssp CTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEETTT
T ss_pred CcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEECCC
Confidence 3458999999864 56777642 2245567899999999999999999985 4444333
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.84 E-value=1.8e-20 Score=193.05 Aligned_cols=243 Identities=19% Similarity=0.164 Sum_probs=149.5
Q ss_pred ccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHHH-HCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 514 TKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 514 ~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~la-~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
...+| ..+.+++|.|++ ..++.|+||++|||++..... .+...+..++ +.||.|+.+|||.++++
T Consensus 56 ~~~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe~---------- 123 (317)
T d1lzla_ 56 PGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPET---------- 123 (317)
T ss_dssp CCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTS----------
T ss_pred ecCCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCccccccccccccc----------
Confidence 33445 368999999985 456789999999998765433 3445566665 56999999999986653
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccch----hhhhcC
Q 004141 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNL----ALMVGT 659 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~----~~~~~~ 659 (771)
.....++|+.+++.++.++ ..+|++||+|+|+|+||++++.++.+.++ .....++..+.... ..+...
T Consensus 124 -~~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 202 (317)
T d1lzla_ 124 -TFPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDRLETVSMTNF 202 (317)
T ss_dssp -CTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTTCCSHHHHHC
T ss_pred -cccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhcccccccccccccccccccccccccccc
Confidence 2233478888888888764 34889999999999999999988865321 12233333222211 011111
Q ss_pred CCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccC-CCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEE
Q 004141 660 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS-KVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETK 738 (771)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 738 (771)
.+...+.............................+|..... ...+|+|+++|+.|..+ .+++.|+++|+++|++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~li~~g~~D~l~--~~~~~~~~~L~~~G~~v~ 280 (317)
T d1lzla_ 203 VDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDLTGLPPTYLSTMELDPLR--DEGIEYALRLLQAGVSVE 280 (317)
T ss_dssp SSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCCTTCCCEEEEEETTCTTH--HHHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHhhhccccccCCCCchhccccCchhhhhccCCCCeEEEECCCCCCH--HHHHHHHHHHHHCCCCEE
Confidence 111100000000000000000000000001111122222211 22479999999999654 789999999999999999
Q ss_pred EEEeCCCCccCCCCC---ChHHHHHHHHHHHHHhhC
Q 004141 739 VIVFPNDVHGIERPQ---SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 739 ~~~~~~~~H~~~~~~---~~~~~~~~i~~fl~~~L~ 771 (771)
+++|++++|++.... ...+...++++||+++||
T Consensus 281 ~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 281 LHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp EEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred EEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 999999999875322 234567889999999986
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=1.5e-20 Score=185.18 Aligned_cols=208 Identities=15% Similarity=0.050 Sum_probs=136.4
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHH----HHHHHHHHc
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL----TAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~----~~i~~l~~~ 610 (771)
++.|+||++||.+.+ ...+...+..|+++||.|++||+||.+....................++. ++...+...
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEA 99 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCCCCcccccccccchhhhhhhhhHHhHHHHHHHHhhhc
Confidence 356999999997665 33566677788999999999999995443221111111111111111222 222222223
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHH
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 690 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (771)
+.++..+++++|+|+||++++.++.++|+...++....+... .... . ...........
T Consensus 100 ~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~~~~~~~~~-~~~~-----------~----------~~~~~~~~~~~ 157 (238)
T d1ufoa_ 100 ERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFP-MKLP-----------Q----------GQVVEDPGVLA 157 (238)
T ss_dssp HHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSC-CCCC-----------T----------TCCCCCHHHHH
T ss_pred cccCCceEEEEEecccHHHHHHHHhcCcchhheeeeeeeccc-cccc-----------c----------ccccccccccc
Confidence 446778999999999999999999998865544443332211 1000 0 00011223334
Q ss_pred HhhcCcccccCC-CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 691 FHSKSPISHISK-VKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 691 ~~~~sp~~~~~~-i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
....++.....+ .++|+|++||++|..||++++.+++++|++.+. +++++.++|++|.+. .+.+..+.+||.
T Consensus 158 ~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~g~gH~~~-----~~~~~~~~~f~~ 232 (238)
T d1ufoa_ 158 LYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRPHYPEGRLARFVEEGAGHTLT-----PLMARVGLAFLE 232 (238)
T ss_dssp HHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGGGCTTCCEEEEEETTCCSSCC-----HHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHhcCCCceEEEEEECCCCCccC-----HHHHHHHHHHHH
Confidence 445566655443 468999999999999999999999999998876 478889999999875 356788999999
Q ss_pred HhhC
Q 004141 768 KYCK 771 (771)
Q Consensus 768 ~~L~ 771 (771)
+||.
T Consensus 233 ~~l~ 236 (238)
T d1ufoa_ 233 HWLE 236 (238)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9973
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.83 E-value=6.9e-20 Score=179.19 Aligned_cols=206 Identities=17% Similarity=0.145 Sum_probs=145.9
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhh-----
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ----- 586 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~----- 586 (771)
.+...||..+++++..|. ++++|+||++|++.+. .......++.|+++||.|++||+.+.++.+.....
T Consensus 7 ~~~~~dg~~~~a~~~~P~----~~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~~~~ 80 (233)
T d1dina_ 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (233)
T ss_dssp CEECTTSCEECEEEECCS----SSSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTSHHH
T ss_pred EEEcCCCCEEEEEEECCC----CCCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHHHHH
Confidence 456678899999999996 3579999999975443 23445668899999999999998654433221100
Q ss_pred ------cCCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCC
Q 004141 587 ------SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 660 (771)
Q Consensus 587 ------~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~ 660 (771)
............|+.++++++.+.+ .+.+||+++|+|+||.+++.++.. +. +.++++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~-~~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~~-------- 149 (233)
T d1dina_ 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVGL-------- 149 (233)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTST-TEEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSCG--------
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCC-CCCCceEEEEecccccceeecccc-cc-cceecccccccc--------
Confidence 0000011223578888899988776 456899999999999999998876 33 445444333110
Q ss_pred CCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEE
Q 004141 661 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVI 740 (771)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 740 (771)
.++...+.++++|+|++||++|+.+|.++.+.+.+.++ .+.+++++
T Consensus 150 ---------------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~~~~~~~~ 195 (233)
T d1dina_ 150 ---------------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFG-ANPLLQVH 195 (233)
T ss_dssp ---------------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHT-TCTTEEEE
T ss_pred ---------------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHh-cCCCEEEE
Confidence 01223445788999999999999999998888777664 57889999
Q ss_pred EeCCCCccCCCCCC-------hHHHHHHHHHHHHH
Q 004141 741 VFPNDVHGIERPQS-------DFESFLNIGLWFKK 768 (771)
Q Consensus 741 ~~~~~~H~~~~~~~-------~~~~~~~i~~fl~~ 768 (771)
+|||++|+|..+.. ..+.++++++||.+
T Consensus 196 ~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 196 WYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp EETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred EECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 99999999864221 23568899999964
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.5e-18 Score=173.96 Aligned_cols=242 Identities=17% Similarity=0.159 Sum_probs=181.4
Q ss_pred CeEEEEecCCCCC--CeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCC
Q 004141 111 SKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 187 (771)
Q Consensus 111 ~~la~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 187 (771)
++|||+++..++. .+||+++ ++++.++++...... ..|+|||||++|||++...
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~sP~wSPDGk~IAf~~~~~------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 60 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT-------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCce----------eeeEECCCCCEEEEEEeec-------------
Confidence 7899999876322 3688888 777888888775554 4899999999999987543
Q ss_pred CCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc
Q 004141 188 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 267 (771)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~ 267 (771)
....+++++..++..+.+ +........+.|||||+. |++.....+
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~----i~~~~~~~~- 105 (269)
T d2hqsa1 61 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKTG- 105 (269)
T ss_dssp ----------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECTTS-
T ss_pred ----------------------------cCcceeeeecccCceeEE--eeeecccccceecCCCCe----eeEeeecCC-
Confidence 346889999999999888 566666778999999999 999874332
Q ss_pred eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 268 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 268 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
...++.... .................|.++++++.+++.+... |
T Consensus 106 -----------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g---- 149 (269)
T d2hqsa1 106 -----------SLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA----G---- 149 (269)
T ss_dssp -----------SCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT----S----
T ss_pred -----------ccceeeccc-----------------ccccceeeeeccccccccccccccccceeccccc----C----
Confidence 124555554 4445556666666677899999999999998775 2
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
..+|++.++.++...+++.... ....+.|||||+.+++.....+...++.++..++..+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CceEeeeecccccceeeecccc--------------------cccccccccccceeEEEeecCCceeeeEeecccccceE
Confidence 4579999988876654433221 12356899999999999988888999999998887655
Q ss_pred ecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 428 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 428 l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
+. .......+.|||||++|+|.... +....||+.++..+
T Consensus 210 ~~-~~~~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 210 LS-STFLDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 248 (269)
T ss_dssp CC-CSSSCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred ee-cCccccceEECCCCCEEEEEEcC-CCCcEEEEEECCCC
Confidence 54 44445678999999999998754 45577898887644
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.82 E-value=5.4e-20 Score=182.12 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=144.4
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+++...+. +|.|+ +++.|+||++|||++.... ..+...+..|+++||+|+++|||.+++. ..
T Consensus 46 ~~~~~~lD--iy~P~----~~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~-----------~~ 108 (261)
T d2pbla1 46 EGDRHKFD--LFLPE----GTPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEV-----------RI 108 (261)
T ss_dssp SSTTCEEE--EECCS----SSCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTS-----------CH
T ss_pred CCcCeEEE--EeccC----CCCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeecccccccccc-----------cC
Confidence 34444554 78886 3467999999999875433 3566678889999999999999986543 22
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC------CceeEEEecCCccchhhhhcCCCCCcchh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCY 667 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p------~~~~~~v~~~p~~~~~~~~~~~~~~~~~~ 667 (771)
...++|+.++++|+.++. ++||+|+|||+||+++++++.... ..+++++..+|+.++..+.... .
T Consensus 109 p~~~~d~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 179 (261)
T d2pbla1 109 SEITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------M 179 (261)
T ss_dssp HHHHHHHHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------T
T ss_pred chhHHHHHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh------h
Confidence 345899999999999884 589999999999999988775432 3578889999987765432110 0
Q ss_pred hhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCc
Q 004141 668 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVH 747 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H 747 (771)
...+. ...+.....||+.++.+..+|+||+||++|..++.+++++|+++++ ++.+.+++.+|
T Consensus 180 ~~~~~-------------~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~-----~~~~~~~~~~H 241 (261)
T d2pbla1 180 NEKFK-------------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD-----ADHVIAFEKHH 241 (261)
T ss_dssp HHHHC-------------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT-----CEEEEETTCCT
T ss_pred ccccc-------------CCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC-----CCceEeCCCCc
Confidence 01111 1235567789999999999999999999999999999999999885 46788999999
Q ss_pred c
Q 004141 748 G 748 (771)
Q Consensus 748 ~ 748 (771)
.
T Consensus 242 F 242 (261)
T d2pbla1 242 F 242 (261)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.82 E-value=3.2e-20 Score=193.85 Aligned_cols=239 Identities=18% Similarity=0.164 Sum_probs=156.8
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC---cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 588 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~---~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~ 588 (771)
++...+|.++.+.+|.|++ ..++.|+||++|||++..... .+...++.++++||.|+++|||.+++..
T Consensus 83 ~i~~~dg~~i~~~iy~P~~--~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~------- 153 (358)
T d1jkma_ 83 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAE------- 153 (358)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETT-------
T ss_pred EEeCCCCCEEEEEEEecCC--CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeeccccccc-------
Confidence 4445678999999999985 456789999999998865433 2345678889999999999999863321
Q ss_pred CCCccccchhhHHHHHHHHHHcC-CCCCCeEEEEEcChhHHHHHHHHhh-----CCCceeEEEecCCccchhhhhcCCCC
Q 004141 589 PGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNLALMVGTTDI 662 (771)
Q Consensus 589 ~~~~~~~~~~D~~~~i~~l~~~~-~~d~~ri~l~G~S~GG~~a~~~a~~-----~p~~~~~~v~~~p~~~~~~~~~~~~~ 662 (771)
+.......++|+.++++|+.++. .++++||+|+|+|.||++++.++.. ....+.+.++..|+.+.....
T Consensus 154 pe~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~~~----- 228 (358)
T d1jkma_ 154 GHHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISGGYAW----- 228 (358)
T ss_dssp EECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCCCTTS-----
T ss_pred ccCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceeccccCc-----
Confidence 11123346899999999998752 3578999999999999999877653 134578888888876532110
Q ss_pred CcchhhhhccC--CCCccCCCCCChhhHH----HH-----hhcCcccc-------cCCCCCcEEEEeeCCCCccCcHHHH
Q 004141 663 PDWCYVESYGS--KGKDSFTESPSVEDLT----RF-----HSKSPISH-------ISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 663 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~-----~~~sp~~~-------~~~i~~P~lii~G~~D~~vp~~~~~ 724 (771)
..+........ .....+ ....... .+ ...+|... ..+--+|+||++|+.|.++ .+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~--~e~~ 303 (358)
T d1jkma_ 229 DHERRLTELPSLVENDGYF---IENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR--DEGI 303 (358)
T ss_dssp CHHHHHHHCTHHHHTTTSS---SCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--HHHH
T ss_pred cchhhcccccchhcccccc---cchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--HHHH
Confidence 00000000000 000000 0000000 00 00111110 0112369999999999776 7889
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCC------CCChHHHHHHHHHHHHHh
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIER------PQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~------~~~~~~~~~~i~~fl~~~ 769 (771)
.|+++|+++|+++++++|++.+|++.. ++...+..+.|..|+..+
T Consensus 304 ~~~~~L~~aGv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 304 AFARRLARAGVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHTTCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998631 233445677888888765
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.82 E-value=2.8e-19 Score=189.63 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=147.3
Q ss_pred HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC--------------CCCCeEEEEE
Q 004141 557 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL--------------ANPSKVTVVG 622 (771)
Q Consensus 557 ~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~--------------~d~~ri~l~G 622 (771)
...++|+++||+|+.+|.||.++++..+ ..++..+.+|..++|+|+..+.. ....||+++|
T Consensus 127 ~~~~~~~~~GYavv~~D~RG~g~S~G~~-----~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G 201 (405)
T d1lnsa3 127 SLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTG 201 (405)
T ss_dssp HHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEE
T ss_pred cchHHHHhCCCEEEEECCCCCCCCCCcc-----ccCChhhhhhHHHHHHHHHhcccccccccccccccccccCCeeEEEe
Confidence 4567899999999999999987776543 23455678899999999976432 2235899999
Q ss_pred cChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC-------cchhh---hhccCCC-----------------
Q 004141 623 GSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-------DWCYV---ESYGSKG----------------- 675 (771)
Q Consensus 623 ~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~-------~~~~~---~~~~~~~----------------- 675 (771)
+|+||++++.+|...|+.++|+|..+++.++.......... .+... .......
T Consensus 202 ~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (405)
T d1lnsa3 202 KSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRL 281 (405)
T ss_dssp ETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhccccccccccchhhhchhhhhhcc
Confidence 99999999999999999999999999998875432211100 00000 0000000
Q ss_pred --CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC
Q 004141 676 --KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ 753 (771)
Q Consensus 676 --~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~ 753 (771)
.............+.+.+.++...+.+|++|+|+++|..|..+++.++.+++++++. +.+.++++.|. +|......
T Consensus 282 ~~~~~~~~~~~~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~~-~~~~~Lilgpw-~H~~~~~~ 359 (405)
T d1lnsa3 282 AEMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE-GHAKHAFLHRG-AHIYMNSW 359 (405)
T ss_dssp HHHHHHHCTTTCCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT-TCCEEEEEESC-SSCCCTTB
T ss_pred chhhhhhhhccccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHHh-CCCcEEEEeCC-CCCCCccc
Confidence 000000000111244667788889999999999999999999999999999999864 66788888875 78765443
Q ss_pred ChHHHHHHHHHHHHHhhC
Q 004141 754 SDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 754 ~~~~~~~~i~~fl~~~L~ 771 (771)
...++.+.+++||++|||
T Consensus 360 ~~~d~~~~~~~wFD~~Lk 377 (405)
T d1lnsa3 360 QSIDFSETINAYFVAKLL 377 (405)
T ss_dssp SSCCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhC
Confidence 344677889999999996
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.82 E-value=3.3e-19 Score=170.49 Aligned_cols=193 Identities=11% Similarity=0.106 Sum_probs=141.0
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc-c----ccchh
Q 004141 524 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV-G----SQDVN 598 (771)
Q Consensus 524 ~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~-~----~~~~~ 598 (771)
.++.|. .++++|+||++||.+.+ ...+...+..++ .++.|++|+.......+..+........ . ....+
T Consensus 4 ~i~~~~---~~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (202)
T d2h1ia1 4 HVFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTK 77 (202)
T ss_dssp EEEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHH
T ss_pred ccCCCC---CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHH
Confidence 366675 45678999999997654 345666677665 5899999875432211111111101000 0 11234
Q ss_pred hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCcc
Q 004141 599 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 599 D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
++...+..+.++..+|++||+++|+|+||.+++.++..+|+.++++++.+|.....
T Consensus 78 ~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------ 133 (202)
T d2h1ia1 78 ELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------ 133 (202)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS------------------------
T ss_pred HHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc------------------------
Confidence 56677777777777999999999999999999999999999999999888763210
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHH
Q 004141 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 758 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 758 (771)
+........+|++++||++|++||+++++++++.|++.|.+++++.||+ +|.+. .+.
T Consensus 134 -----------------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~g-gH~~~-----~~~ 190 (202)
T d2h1ia1 134 -----------------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLENANANVTMHWENR-GHQLT-----MGE 190 (202)
T ss_dssp -----------------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCEEEEEEESS-TTSCC-----HHH
T ss_pred -----------------cccccccccchhhcccccCCCccCHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHH
Confidence 0111223457899999999999999999999999999999999999986 89874 466
Q ss_pred HHHHHHHHHHh
Q 004141 759 FLNIGLWFKKY 769 (771)
Q Consensus 759 ~~~i~~fl~~~ 769 (771)
++.+.+||++.
T Consensus 191 ~~~~~~wl~k~ 201 (202)
T d2h1ia1 191 VEKAKEWYDKA 201 (202)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88999999874
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.6e-20 Score=176.74 Aligned_cols=192 Identities=16% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH--HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~--~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
-+|..+++....|. ....+|+||++||.+.+. ..|.. .+..|+++||.|+++|+|| +|.+..........
T Consensus 13 v~G~~i~y~~~~~~---~~~~~~~vvllHG~~~~~--~~w~~~~~~~~la~~gy~via~D~~G---~G~S~~~~~~~~~~ 84 (208)
T d1imja_ 13 VQGQALFFREALPG---SGQARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIG 84 (208)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCCH--HHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTT
T ss_pred ECCEEEEEEEecCC---CCCCCCeEEEECCCCCCh--hHHhhhHHHHHHHHcCCeEEEeeccc---ccCCCCCCcccccc
Confidence 36888888777775 445678899999977652 24443 4678999999999999999 66654322222222
Q ss_pred ccc-hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhcc
Q 004141 594 SQD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 672 (771)
Q Consensus 594 ~~~-~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 672 (771)
... .+++.+.++.+ +.+++.|+||||||.+++.++.++|++++++|+.+|...-. +
T Consensus 85 ~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~----------------~- 141 (208)
T d1imja_ 85 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------------I- 141 (208)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------------S-
T ss_pred hhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccccc----------------c-
Confidence 222 23333333332 35788999999999999999999999999999988853100 0
Q ss_pred CCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC
Q 004141 673 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP 752 (771)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~ 752 (771)
....+.++++|+|+++|++|+++|.+. +. + ..-...++.++++++|... .
T Consensus 142 -----------------------~~~~~~~i~~P~Lii~G~~D~~~~~~~--~~---~-~~~~~~~~~~i~~~gH~~~-~ 191 (208)
T d1imja_ 142 -----------------------NAANYASVKTPALIVYGDQDPMGQTSF--EH---L-KQLPNHRVLIMKGAGHPCY-L 191 (208)
T ss_dssp -----------------------CHHHHHTCCSCEEEEEETTCHHHHHHH--HH---H-TTSSSEEEEEETTCCTTHH-H
T ss_pred -----------------------ccccccccccccccccCCcCcCCcHHH--HH---H-HhCCCCeEEEECCCCCchh-h
Confidence 011235678999999999999887442 22 2 2234589999999999754 2
Q ss_pred CChHHHHHHHHHHHHH
Q 004141 753 QSDFESFLNIGLWFKK 768 (771)
Q Consensus 753 ~~~~~~~~~i~~fl~~ 768 (771)
+....+.+.+++||++
T Consensus 192 ~~p~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 192 DKPEEWHTGLLDFLQG 207 (208)
T ss_dssp HCHHHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHhc
Confidence 3455788899999874
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.81 E-value=2e-20 Score=191.68 Aligned_cols=224 Identities=18% Similarity=0.183 Sum_probs=150.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHH-HHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+.++...+|.|+. +.|+||++|||++..... .+...+..+ ++.||.|+.+|||.++++ ....
T Consensus 65 ~g~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~-----------~~p~ 128 (311)
T d1jjia_ 65 NGDIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEH-----------KFPA 128 (311)
T ss_dssp TEEEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTS-----------CTTH
T ss_pred CCcEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEecccccccc-----------ccch
Confidence 3478899999862 459999999998765443 444555555 456999999999997654 2233
Q ss_pred chhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC----CCceeEEEecCCccchhhhh----cCCC-CC
Q 004141 596 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMV----GTTD-IP 663 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~p~~~~~~~~----~~~~-~~ 663 (771)
.++|+.++++|+.++ ..+|++||+|+|+|+||++++.++... .....+.++.+|.++..... .... ..
T Consensus 129 ~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~ 208 (311)
T d1jjia_ 129 AVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPTPSLLEFGEGLW 208 (311)
T ss_dssp HHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCCHHHHHTSSSCS
T ss_pred hhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccCcccccccccccc
Confidence 578999999998875 358899999999999999988776432 34578888888887643110 0000 00
Q ss_pred cc--hhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEE
Q 004141 664 DW--CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIV 741 (771)
Q Consensus 664 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 741 (771)
.+ ........ .+ .. ..........+|+....+..+|+||++|+.|.++ .++..|+++|+++|+++++++
T Consensus 209 ~~~~~~~~~~~~----~~--~~-~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l~--d~~~~~~~~L~~~Gv~v~~~~ 279 (311)
T d1jjia_ 209 ILDQKIMSWFSE----QY--FS-REEDKFNPLASVIFADLENLPPALIITAEYDPLR--DEGEVFGQMLRRAGVEASIVR 279 (311)
T ss_dssp SCCHHHHHHHHH----HH--CS-SGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHTTCCEEEEE
T ss_pred cccHHHhhhhhh----hc--cc-ccccccccccchhhcccccCCCEEEEEcCCCCCh--HHHHHHHHHHHHCCCCEEEEE
Confidence 00 00000000 00 00 0000111234666555555689999999999776 588999999999999999999
Q ss_pred eCCCCccCCC--C--CChHHHHHHHHHHH
Q 004141 742 FPNDVHGIER--P--QSDFESFLNIGLWF 766 (771)
Q Consensus 742 ~~~~~H~~~~--~--~~~~~~~~~i~~fl 766 (771)
|++++|+|.. + ....++++++.+||
T Consensus 280 ~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 280 YRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp EEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred ECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 9999998653 1 12346677788886
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.81 E-value=6.8e-19 Score=177.56 Aligned_cols=262 Identities=9% Similarity=0.018 Sum_probs=174.3
Q ss_pred CCC--cceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCC--CCe
Q 004141 50 NGN--GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--SPI 125 (771)
Q Consensus 50 s~d--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--~~~ 125 (771)
||| |++|+|+.. ++||++++ .++++++||..+ +.+..|+|||||++|||++...+. ..+
T Consensus 7 sPdi~G~~v~f~~~----------~dl~~~d~--~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~~ 69 (281)
T d1k32a2 7 NPDIHGDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNTAD 69 (281)
T ss_dssp EEEEETTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred CCCCCCCEEEEEeC----------CcEEEEEC--CCCCEEEEecCC-----CcccCEEECCCCCEEEEEEeeCCCCCceE
Confidence 467 999999853 37999776 455788998876 668899999999999999876532 246
Q ss_pred EEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccc
Q 004141 126 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 204 (771)
Q Consensus 126 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (771)
+|.+. .+++.++++.......+.. .....+.|||||+.|+|.......
T Consensus 70 i~~~~~~~g~~~~lt~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~---------------------------- 118 (281)
T d1k32a2 70 LYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGNLIISTDAMQPF---------------------------- 118 (281)
T ss_dssp EEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCCEEEEECTTSSS----------------------------
T ss_pred EEEEEecCCceEEeeecCCCccCcc---ccccccccCCCCCEEEEEEccCCC----------------------------
Confidence 88888 6777777765432211000 011477899999999997543211
Q ss_pred cCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 205 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 205 ~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.....++.++.+++..+.. ... .....|++|++. +++............ .. .......
T Consensus 119 ----------~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~-~~~~~~~ 176 (281)
T d1k32a2 119 ----------SSMTCLYRVENDGINFVPL--NLG---PATHILFADGRR----VIGRNTFELPHWKGY--RG-GTRGKIW 176 (281)
T ss_dssp ----------TTCCEEEEEEGGGTEEEEC--CSC---SCSEEEEETTEE----EEEESCSCCTTSTTC--CS-TTCCEEE
T ss_pred ----------ccceeeeeecCCCceeEEe--cCC---ccceeeecCCCe----EEEeeccccceeeee--cc-CCcceee
Confidence 1235678889888887776 222 234678889888 777664333211111 01 1112222
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 364 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 364 (771)
... .......++........|.++++ .+++..... +..+||++|+++++.+++
T Consensus 177 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~l~~~d~~g~~~~~l 229 (281)
T d1k32a2 177 IEV-----------------NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDID--------GFGQIYSTDLDGKDLRKH 229 (281)
T ss_dssp EEE-----------------ETTEEEEEECCSSCCEEEEEETT--EEEEEECTT--------SSCEEEEEETTSCSCEEC
T ss_pred eec-----------------cccceeeccCCccccceeeeecc--ccceecccc--------cccceEEEeCCCCceEEe
Confidence 232 34455566666667778888876 466766553 256899999999888777
Q ss_pred ccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC
Q 004141 365 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 433 (771)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~ 433 (771)
+.... .....|||||++|+|... ..||.+|+++|+.++|+....
T Consensus 230 t~~~~---------------------~~~~~~SpDG~~I~f~~~----~~l~~~d~~~g~~~~i~~~~~ 273 (281)
T d1k32a2 230 TSFTD---------------------YYPRHLNTDGRRILFSKG----GSIYIFNPDTEKIEKIEIGDL 273 (281)
T ss_dssp CCCCS---------------------SCEEEEEESSSCEEEEET----TEEEEECTTTCCEEECCCCCC
T ss_pred ecCCC---------------------cccccCcCCCCEEEEEeC----CEEEEEECCCCCEEEeccCCc
Confidence 54321 122369999999999753 369999999999999986543
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.80 E-value=1.6e-19 Score=185.19 Aligned_cols=236 Identities=17% Similarity=0.129 Sum_probs=153.1
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCC-cEEEEECCCCCCCCChhhhhcCCC
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G-~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
....+|.++.+.+|.|++ ..++.|+||++|||++.... ..+...+..++.+| +.|+.+|||.+++.
T Consensus 50 ~~~~~g~~i~~~~y~P~~--~~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~---------- 117 (308)
T d1u4na_ 50 DMDLPGRTLKVRMYRPEG--VEPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH---------- 117 (308)
T ss_dssp EEEETTEEEEEEEEECTT--CCSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS----------
T ss_pred EEecCCceEEEEEEeccc--cCCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc----------
Confidence 334578889999999985 34579999999999875533 34555666666555 67889999986543
Q ss_pred CccccchhhHHHHHHHHHHcC---CCCCCeEEEEEcChhHHHHHHHHhhCCC----ceeEEEecCCccchhhhhcCCCCC
Q 004141 591 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIP 663 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~---~~d~~ri~l~G~S~GG~~a~~~a~~~p~----~~~~~v~~~p~~~~~~~~~~~~~~ 663 (771)
......+|+..+++++.++. .+|++||+++|+|+||++++.++....+ .+.+..+.++..+......
T Consensus 118 -~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 191 (308)
T d1u4na_ 118 -KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPAHP----- 191 (308)
T ss_dssp -CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTTSC-----
T ss_pred -ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccccc-----
Confidence 33345789999999998753 4789999999999999999988765322 3455555555543211100
Q ss_pred cchhhhhccCCCC-cc-------CCCCCChhhHHHHhhcCcccccCCCC-CcEEEEeeCCCCccCcHHHHHHHHHHHhCC
Q 004141 664 DWCYVESYGSKGK-DS-------FTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQYARALREKG 734 (771)
Q Consensus 664 ~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~lii~G~~D~~vp~~~~~~~~~~l~~~g 734 (771)
............ .. ...... .........++........ +|+||++|+.|..+ .+++.|+++|+++|
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~d~~~~Pp~li~~g~~D~l~--~~~~~~~~~L~~~G 267 (308)
T d1u4na_ 192 -PASIEENAEGYLLTGGMSLWFLDQYLNS-LEELTHPWFSPVLYPDLSGLPPAYIATAQYDPLR--DVGKLYAEALNKAG 267 (308)
T ss_dssp -CHHHHHTSSSSSSCHHHHHHHHHHHCSS-GGGGGCTTTCGGGCSCCTTCCCEEEEEEEECTTH--HHHHHHHHHHHHTT
T ss_pred -cchhhhccccccccchhhhhhhhcccCc-cccccchhhhhhhchhhcCCCCeeEEecCcCCch--HHHHHHHHHHHHCC
Confidence 000000000000 00 000000 0001111222222222222 58999999999776 68899999999999
Q ss_pred CCEEEEEeCCCCccCCCC----CChHHHHHHHHHHHHHhh
Q 004141 735 VETKVIVFPNDVHGIERP----QSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 735 ~~~~~~~~~~~~H~~~~~----~~~~~~~~~i~~fl~~~L 770 (771)
+++++++|++++|++... ....+.++.+.+||++.|
T Consensus 268 ~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 268 VKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp CCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999986531 223478889999999877
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=2.2e-19 Score=179.54 Aligned_cols=198 Identities=11% Similarity=0.120 Sum_probs=130.6
Q ss_pred CCCCCcEEEEEcCCCCCCCC---CcchHHH----HHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSL---SSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 605 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~---~~~~~~~----~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~ 605 (771)
..+++|+||++|||++.... ..+.... ..+++.||.|+++|||.+++. .....++|+.++++
T Consensus 27 ~~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~-----------~~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 27 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 95 (263)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcch-----------hhhHHHHhhhhhhh
Confidence 45678999999998764322 2333333 444688999999999987653 12245899999999
Q ss_pred HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC-----------------ceeEEEecCCccchhhhhcCCCCCcchhh
Q 004141 606 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----------------KFVAAAARNPLCNLALMVGTTDIPDWCYV 668 (771)
Q Consensus 606 ~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-----------------~~~~~v~~~p~~~~~~~~~~~~~~~~~~~ 668 (771)
|+.++. +..+|+|+|+|+||.+++.++...++ .+.+.+...+..++..+........+...
T Consensus 96 ~l~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred cccccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 999874 67899999999999999998875432 34555555555554333211111111111
Q ss_pred hhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCcc
Q 004141 669 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHG 748 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~ 748 (771)
..+.. ........ ...........+.++.+|+|++||++|++||++++.+|+++|++.|++++++++++++|.
T Consensus 174 ~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~~g~~~~~~~~~~~~H~ 246 (263)
T d1vkha_ 174 LAFPD-GIQMYEEE------PSRVMPYVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQDYQLSFKLYLDDLGLHN 246 (263)
T ss_dssp HHCTT-CGGGCCCC------HHHHHHHHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHHTTCCEEEEEECCCSGG
T ss_pred ccccc-cccccccc------ccccCccccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHHCCCCEEEEEECCCCch
Confidence 11111 00000000 000000112234556799999999999999999999999999999999999999999997
Q ss_pred CC
Q 004141 749 IE 750 (771)
Q Consensus 749 ~~ 750 (771)
..
T Consensus 247 ~~ 248 (263)
T d1vkha_ 247 DV 248 (263)
T ss_dssp GG
T ss_pred hh
Confidence 43
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.79 E-value=3e-18 Score=174.32 Aligned_cols=232 Identities=16% Similarity=0.162 Sum_probs=141.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-HHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.|..+++..+-+ ...|+||++||.+.+ ...|. ..+..|+++||.|+++|+|| +|.+..... .....
T Consensus 8 g~~~i~y~~~G~------~~~p~vvl~HG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~~--~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFGD------PADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRDF--AAHPY 74 (297)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCCT--TTSCC
T ss_pred CCEEEEEEEecC------CCCCEEEEECCCCcC--hhHHHHHHHHHHHhCCCEEEEEeCCC---Ccccccccc--ccccc
Confidence 356777666643 245889999998765 33453 45778889999999999999 554421111 11123
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--------hhcC---CCCC-
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--------MVGT---TDIP- 663 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--------~~~~---~~~~- 663 (771)
.++|+.+.+..+++. ++.+++.++||||||.+++.+|.++|++++++|+.++...... .... ...+
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGGLDIDFDANIERVMRGEPTLDGLPG 152 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCTTCCHHHHHHHHHHTCCCSSCSCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEccccccccchhhhHHHhhhhhhhhhhhh
Confidence 466666666666655 3457899999999999999999999999999998876542210 0000 0000
Q ss_pred -cchhhhh---ccCCCC---------------ccCCCCCC-hhhHHHH-----------------------hhcCccccc
Q 004141 664 -DWCYVES---YGSKGK---------------DSFTESPS-VEDLTRF-----------------------HSKSPISHI 700 (771)
Q Consensus 664 -~~~~~~~---~~~~~~---------------~~~~~~~~-~~~~~~~-----------------------~~~sp~~~~ 700 (771)
....... ...... ......+. ......+ ...+....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (297)
T d1q0ra_ 153 PQQPFLDALALMNQPAEGRAAEVAKRVSKWRILSGTGVPFDDAEYARWEERAIDHAGGVLAEPYAHYSLTLPPPSRAAEL 232 (297)
T ss_dssp CCHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHHTTTCCSCCCGGGGCCCCCGGGGGGG
T ss_pred hhHHHHHHHHHhccccchhhHHHHHHHHHHhhhccccccchHHHHHHHHHHhhhhccccchhhhhhhhhhhccccchhhh
Confidence 0000000 000000 00000000 0000000 011122346
Q ss_pred CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 701 SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 701 ~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.++++|+|+++|++|..+|++.++.+.+.+. +.++++++++||.+..+ ...++.+.|++||+.
T Consensus 233 ~~i~~Pvlvi~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~~~gH~~~~e-~p~~~~~~i~~~l~~ 295 (297)
T d1q0ra_ 233 REVTVPTLVIQAEHDPIAPAPHGKHLAGLIP----TARLAEIPGMGHALPSS-VHGPLAEVILAHTRS 295 (297)
T ss_dssp GGCCSCEEEEEETTCSSSCTTHHHHHHHTST----TEEEEEETTCCSSCCGG-GHHHHHHHHHHHHHH
T ss_pred hccCCceEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCcchhh-CHHHHHHHHHHHHHh
Confidence 7889999999999999999998888776664 37899999999987633 344667777777764
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.79 E-value=1.4e-19 Score=183.10 Aligned_cols=236 Identities=17% Similarity=0.142 Sum_probs=141.7
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+.+-+|.+++...+..+ +..|+||++||+++. ...|...+..++++||.|+++|+|| +|.+... ..
T Consensus 6 ~~~~~g~~i~y~~~g~~-----~~~~~iv~lHG~~g~--~~~~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~----~~ 71 (290)
T d1mtza_ 6 YAKVNGIYIYYKLCKAP-----EEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFG---CGRSEEP----DQ 71 (290)
T ss_dssp EEEETTEEEEEEEECCS-----SCSEEEEEECCTTTC--CSGGGGGGGGGGGGTEEEEEECCTT---STTSCCC----CG
T ss_pred eEEECCEEEEEEEcCCC-----CCCCeEEEECCCCCc--hHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc----cc
Confidence 44557888876666432 245889999998755 3356666667778899999999999 5544311 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-------cC------
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-------GT------ 659 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~-------~~------ 659 (771)
....+++..+.+..++++- ...+++.|+||||||.+++.++.++|++++++++.++........ ..
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEMNRLIDELPAKYR 150 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBHHHHHHHHHHHHHTSCHHHH
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccCcccchhhhhhhhhhhhHHHH
Confidence 1122333333333333321 124689999999999999999999999999999988865431110 00
Q ss_pred ---------CCCCcchhhh---hccCCCCccCCCCCChhhHH---H---------------------HhhcCcccccCCC
Q 004141 660 ---------TDIPDWCYVE---SYGSKGKDSFTESPSVEDLT---R---------------------FHSKSPISHISKV 703 (771)
Q Consensus 660 ---------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~---------------------~~~~sp~~~~~~i 703 (771)
.......+.. .............+ ..... . ....+....+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (290)
T d1mtza_ 151 DAIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWP-PEVLKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAI 229 (290)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHTSCSSCCC-HHHHHHHHHHHHSSHHHHHTCSBTTBCCSTTTTCBCTTTGGGC
T ss_pred HHHHHhhhhccccchhHHHHHHHHhhhhhcccccch-HHHHHHHHHHhhhhhhhhhcchhHHhHhhhhhcccHHHHhhcc
Confidence 0000000000 00000000000000 00000 0 0011122345678
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
++|+|+++|++|..+| +.++.+.+.+. ++++++++++||.+... ...++.+.|.+||.+||
T Consensus 230 ~~P~l~i~G~~D~~~~-~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~FL~~h~ 290 (290)
T d1mtza_ 230 KIPTLITVGEYDEVTP-NVARVIHEKIA----GSELHVFRDCSHLTMWE-DREGYNKLLSDFILKHL 290 (290)
T ss_dssp CSCEEEEEETTCSSCH-HHHHHHHHHST----TCEEEEETTCCSCHHHH-SHHHHHHHHHHHHHTCC
T ss_pred cceEEEEEeCCCCCCH-HHHHHHHHHCC----CCEEEEECCCCCchHHh-CHHHHHHHHHHHHHHhC
Confidence 8999999999998765 56666666554 36899999999976543 45678889999999986
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.79 E-value=4e-19 Score=185.42 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=163.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~--~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.||.+|.+.+|+|+ ..++.|+||+.||.+.... ...+....+.|+++||+|+++|.||.++++..+ ...
T Consensus 13 rDGv~L~~~vy~P~---~~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~------~~~ 83 (347)
T d1ju3a2 13 RDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF------VPH 83 (347)
T ss_dssp TTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC------CTT
T ss_pred CCCCEEEEEEEEcC---CCCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc------ccc
Confidence 47899999999997 4678999999998332111 112233467889999999999999988776543 223
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC--CCCC------cc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TDIP------DW 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~--~~~~------~~ 665 (771)
..+..|..++++|+.+++..+ .||+++|+|+||++++++|...|..+++++..++..++...... .... .|
T Consensus 84 ~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~~~~~~~~~ 162 (347)
T d1ju3a2 84 VDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALLGW 162 (347)
T ss_dssp TTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCccchhhHHHH
Confidence 345678889999999998876 79999999999999999999989999999999888764211000 0000 00
Q ss_pred hhhh---hccC-------------------------CCCccCCCCC---------------ChhhHHHHhhcCcccccCC
Q 004141 666 CYVE---SYGS-------------------------KGKDSFTESP---------------SVEDLTRFHSKSPISHISK 702 (771)
Q Consensus 666 ~~~~---~~~~-------------------------~~~~~~~~~~---------------~~~~~~~~~~~sp~~~~~~ 702 (771)
.... .... .........+ .......+...++...+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 242 (347)
T d1ju3a2 163 SALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQSISLFERLGG 242 (347)
T ss_dssp HHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHTTCCHHHHTT
T ss_pred HHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhcCCHHHHhhc
Confidence 0000 0000 0000000000 0111234556678888999
Q ss_pred CCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCC------------CCCChHHHHHHHHHHHHHhh
Q 004141 703 VKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIE------------RPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 703 i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~------------~~~~~~~~~~~i~~fl~~~L 770 (771)
+++|+|+++|..|..++ .+.+++++++. +.+.++++.|. +|... ......+.....++||++||
T Consensus 243 i~vP~L~i~G~~D~~~~--~~~~~~~~~~~-~~~~~liigpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~l~wfD~~L 318 (347)
T d1ju3a2 243 LATPALITAGWYDGFVG--ESLRTFVAVKD-NADARLVVGPW-SHSNLTGRNADRKFGIAATYPIQEATTMHKAFFDRHL 318 (347)
T ss_dssp CCCCEEEEEEEECTTHH--HHHHHHHHHTT-TSCEEEEEEEE-ESSCCSSEETTEECCGGGSCCHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEeccccCCCcc--hhHHHHHHhhc-cCCceEEEcCc-cccCcccccCCCCCCccccccHHHHHHHHHHHHHHHh
Confidence 99999999999998764 45677777764 55778887765 55432 12234567778999999999
Q ss_pred C
Q 004141 771 K 771 (771)
Q Consensus 771 ~ 771 (771)
|
T Consensus 319 K 319 (347)
T d1ju3a2 319 R 319 (347)
T ss_dssp S
T ss_pred C
Confidence 7
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.78 E-value=3.5e-19 Score=174.25 Aligned_cols=220 Identities=14% Similarity=0.124 Sum_probs=134.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.++||++||.+.+ ...|...++.|+++||.|+++|+|| +|.+...... ........++..++..+... +.+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G---~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEELVH-TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHHTT-CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccccc-cchhHHHHHHHHHHhhhhhc---ccC
Confidence 4668899997665 4468888999999999999999999 4443322111 11112234444555554444 357
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcc--hhhhhccCC-------CCccCCCCCChhh
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW--CYVESYGSK-------GKDSFTESPSVED 687 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~ 687 (771)
+++|+|||+||.+++.++.++|.....++............. .....+ ......... .............
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMY-EGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHH-HHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 899999999999999999998876544443222211100000 000000 000000000 0000000000011
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
............+..+++|+|+++|++|..+|++.++.+++.+. +.++++++++++||.+...+...++.+.+.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~gH~~~~~~~~~~~~~~i~~Fl~ 238 (242)
T d1tqha_ 161 ALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIE--SPVKQIKWYEQSGHVITLDQEKDQLHEDIYAFLE 238 (242)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCC--CSSEEEEEETTCCSSGGGSTTHHHHHHHHHHHHH
T ss_pred cccccccccccccceeccccceeecccCCccCHHHHHHHHHHcC--CCCcEEEEECCCCCcCccccCHHHHHHHHHHHHH
Confidence 11111122334567889999999999999999999999888764 3458999999999987766666788999999998
Q ss_pred H
Q 004141 768 K 768 (771)
Q Consensus 768 ~ 768 (771)
+
T Consensus 239 ~ 239 (242)
T d1tqha_ 239 S 239 (242)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.78 E-value=1e-18 Score=176.28 Aligned_cols=232 Identities=18% Similarity=0.183 Sum_probs=137.4
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+..++++..-+ ...|+||++||.+..... ..|...+..|+ +||.|+++|+|| +|.+.............
T Consensus 13 ~~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~ 82 (281)
T d1c4xa_ 13 TLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG---FGQSEYPETYPGHIMSW 82 (281)
T ss_dssp TSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT---STTSCCCSSCCSSHHHH
T ss_pred CEEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC---Cccccccccccccchhh
Confidence 46677665433 346899999996654321 23555667775 589999999999 55543211111111112
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccch--------hhhhcCCCCCcchh-
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALMVGTTDIPDWCY- 667 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~--------~~~~~~~~~~~~~~- 667 (771)
.++....+..+++. ...+++.++||||||.+++.++.++|++++++|+.++.... ..+......+....
T Consensus 83 ~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (281)
T d1c4xa_ 83 VGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTPY 160 (281)
T ss_dssp HHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHHH
T ss_pred HHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccchh
Confidence 33333333333333 23468999999999999999999999999999998875321 00100000000000
Q ss_pred hhhccCCCCccCCCCCChh-hHH----------------HH---------hhcCcccccCCCCCcEEEEeeCCCCccCcH
Q 004141 668 VESYGSKGKDSFTESPSVE-DLT----------------RF---------HSKSPISHISKVKTPTIFLLGAQDLRVPVS 721 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~-~~~----------------~~---------~~~sp~~~~~~i~~P~lii~G~~D~~vp~~ 721 (771)
...... ........+... ... .. ....+...+.++++|+|+++|++|..+|++
T Consensus 161 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~ 239 (281)
T d1c4xa_ 161 RELIHS-FVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPLD 239 (281)
T ss_dssp HHHHHT-TSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSSSCTH
T ss_pred hhhhhh-hcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEEEEeCCCCCcCHH
Confidence 000000 000000001000 000 00 011222346788999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 722 NGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 722 ~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
.++.+.+.+. +.++.+++++||.... +...++.+.+.+||+
T Consensus 240 ~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 240 TSLYLTKHLK----HAELVVLDRCGHWAQL-ERWDAMGPMLMEHFR 280 (281)
T ss_dssp HHHHHHHHCS----SEEEEEESSCCSCHHH-HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CCEEEEECCCCCchHH-hCHHHHHHHHHHHhC
Confidence 8888877664 3789999999997653 345578888889986
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=4.5e-18 Score=177.67 Aligned_cols=197 Identities=11% Similarity=0.049 Sum_probs=139.3
Q ss_pred CccccceEEEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEE
Q 004141 37 ISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVV 116 (771)
Q Consensus 37 ~~~~~~~~~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~ 116 (771)
+|+....-+.|. ||++|||..+ +.++++++ .++..+++... ..+..++|||||++|++.
T Consensus 2 ~~~~~~~~fSP~---dG~~~a~~~~----------g~v~v~d~--~~~~~~~~~~~------~~v~~~~~spDg~~l~~~ 60 (360)
T d1k32a3 2 IPSKFAEDFSPL---DGDLIAFVSR----------GQAFIQDV--SGTYVLKVPEP------LRIRYVRRGGDTKVAFIH 60 (360)
T ss_dssp CGGGGEEEEEEC---GGGCEEEEET----------TEEEEECT--TSSBEEECSCC------SCEEEEEECSSSEEEEEE
T ss_pred CchhhcccccCC---CCCEEEEEEC----------CeEEEEEC--CCCcEEEccCC------CCEEEEEECCCCCEEEEE
Confidence 566665555543 9999999742 47788766 34455665322 568899999999999998
Q ss_pred ecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCcc
Q 004141 117 RNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 194 (771)
Q Consensus 117 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (771)
+..++ ..+.+| .++..+++......+ ..++|||||++|++...
T Consensus 61 ~~~~g---~~v~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~---------------------- 105 (360)
T d1k32a3 61 GTREG---DFLGIYDYRTGKAEKFEENLGNV----------FAMGVDRNGKFAVVAND---------------------- 105 (360)
T ss_dssp EETTE---EEEEEEETTTCCEEECCCCCCSE----------EEEEECTTSSEEEEEET----------------------
T ss_pred EcCCC---CEEEEEECCCCcEEEeeCCCceE----------Eeeeecccccccceecc----------------------
Confidence 76541 234455 444544444333333 58999999999999643
Q ss_pred CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeee
Q 004141 195 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 274 (771)
Q Consensus 195 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~ 274 (771)
...+++|++++++...+. .........++|||||+. |+|.........
T Consensus 106 ----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~----la~~~~~~~~~~----- 153 (360)
T d1k32a3 106 ----------------------RFEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRF----IAYGFPLKHGET----- 153 (360)
T ss_dssp ----------------------TSEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCE----EEEEEEECSSTT-----
T ss_pred ----------------------ccccccccccccceeeee-ecccccccchhhccceee----eeeeccccccce-----
Confidence 357899999999877663 234446778999999999 999874433111
Q ss_pred eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 275 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 275 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
.......++++++ .+++...++........+.|||||++|+|.+.+.
T Consensus 154 ~~~~~~~~~v~d~-----------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 154 DGYVMQAIHVYDM-----------------EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp CSCCEEEEEEEET-----------------TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred eeccccceeeecc-----------------ccCceeeecccccccccccccCCCCEEEEEeCCC
Confidence 1122346888898 7788888888888888999999999999998764
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.77 E-value=4.1e-18 Score=179.00 Aligned_cols=252 Identities=13% Similarity=0.130 Sum_probs=158.7
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCC----CCCCCc-----chHHHHHHHHCCcEEEEECCCCCCCCChhh
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH----SVSLSS-----YSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~----~~~~~~-----~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~ 584 (771)
+-.||.+|.+.+|+|+ ..++.|+||+.|+-+. ...... +....+.|+++||+|+.+|.||.++++..+
T Consensus 30 ~~rDG~~L~~~v~~P~---~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 106 (381)
T d1mpxa2 30 PMRDGVKLHTVIVLPK---GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDY 106 (381)
T ss_dssp ECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred ECCCCCEEEEEEEEeC---CCCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccCCCCCce
Confidence 3457899999999998 4678999999986211 111111 123457899999999999999987776654
Q ss_pred hhc-----CCCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 585 LQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 585 ~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
... ........+++|..++++|+.++..++.+||+++|+|+||++++++|...|+.++++|..+|+.+.......
T Consensus 107 ~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~~~~~~~ 186 (381)
T d1mpxa2 107 VMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDW 186 (381)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTTSSS
T ss_pred eccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeecccccccccccc
Confidence 321 112234457899999999999987788899999999999999999999999999999999998875321100
Q ss_pred CC--C---C--cchhhhhccCCCCccCCC-------------CCC--------------hh-------hHHHHhhcCccc
Q 004141 660 TD--I---P--DWCYVESYGSKGKDSFTE-------------SPS--------------VE-------DLTRFHSKSPIS 698 (771)
Q Consensus 660 ~~--~---~--~~~~~~~~~~~~~~~~~~-------------~~~--------------~~-------~~~~~~~~sp~~ 698 (771)
.. . . .|..... .......... .+. .. ....+...++..
T Consensus 187 ~~gG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~w~~~s~~~ 265 (381)
T d1mpxa2 187 FNYGAFRQVNFDYFTGQL-SKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQALDK 265 (381)
T ss_dssp EETTEEBGGGHHHHHHHH-SSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCHHH
T ss_pred ccCchhhhccHHHHHhhh-hhccccchhhhhhhhhHHHHHhcccccccchhhccccchHHHHHhhCCCccchhhhcCchh
Confidence 00 0 0 0000000 0000000000 000 00 001222333433
Q ss_pred --ccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHh---CCCCEEEEEeCCCCccCCC------------CCC-hHHHHH
Q 004141 699 --HISKVKTPTIFLLGAQDLRVPVSNGLQYARALRE---KGVETKVIVFPNDVHGIER------------PQS-DFESFL 760 (771)
Q Consensus 699 --~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~---~g~~~~~~~~~~~~H~~~~------------~~~-~~~~~~ 760 (771)
...++++|+|+++|..|...... +...++.++. .+.+.++++-|. +|.-.. .+. ......
T Consensus 266 ~~~~~~i~vP~l~i~G~~d~~~~~~-~~~~~~~~~~~~~~~~~~~LviGPw-~H~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (381)
T d1mpxa2 266 VMARTPLKVPTMWLQGLWDQEDMWG-AIHSYAAMEPRDKRNTLNYLVMGPW-RHSQVNYDGSALGALNFEGDTARQFRHD 343 (381)
T ss_dssp HHHTSCCCSCEEEEEETTCSSCSSH-HHHHHHHHGGGCTTSSSEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHH
T ss_pred hhhhccccCceEEEeccccCCcccc-HHHHHHHHHHhccccCCceEEEecC-cCCCCccCCCcCCccccccchhhhhHHH
Confidence 34568899999999999876544 4445555543 356788888876 674211 121 222345
Q ss_pred HHHHHHHHhhC
Q 004141 761 NIGLWFKKYCK 771 (771)
Q Consensus 761 ~i~~fl~~~L~ 771 (771)
.+++||++|||
T Consensus 344 ~~l~wFD~~LK 354 (381)
T d1mpxa2 344 VLRPFFDQYLV 354 (381)
T ss_dssp THHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 57899999997
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.77 E-value=2.8e-17 Score=158.20 Aligned_cols=198 Identities=17% Similarity=0.218 Sum_probs=147.5
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCC---CCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV---SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~---~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|++++..| .....|++|++||.+... ........++.|+++||.|+.+||||.+.+... ...+..
T Consensus 10 G~Le~~~~~~----~~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G~------~~~~~~ 79 (218)
T d2i3da1 10 GRLEGRYQPS----KEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGE------FDHGAG 79 (218)
T ss_dssp EEEEEEEECC----SSTTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC------CCSSHH
T ss_pred ccEEEEEeCC----CCCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCccc------cccchh
Confidence 4899987644 344569999999854322 122234567789999999999999996554322 234556
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 675 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (771)
+.+|..++++|+..+.. ...++.++|+|+||.+++.++.+.+. ..++++..|.....
T Consensus 80 e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~--------------------- 136 (218)
T d2i3da1 80 ELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTY--------------------- 136 (218)
T ss_dssp HHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTS---------------------
T ss_pred HHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhcc-ccceeecccccccc---------------------
Confidence 78999999999998764 34578999999999999999888654 55566655543210
Q ss_pred CccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC-CCCEEEEEeCCCCccCCCCCC
Q 004141 676 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK-GVETKVIVFPNDVHGIERPQS 754 (771)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~~H~~~~~~~ 754 (771)
....+....+|+|+++|+.|.+++..+..++.+.++.. +..+++++++|++|.|. ..
T Consensus 137 --------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~~~~~~~~~vi~gAdHfF~--g~ 194 (218)
T d2i3da1 137 --------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILITHRTLPGANHFFN--GK 194 (218)
T ss_dssp --------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTTSTTCCEEEEEETTCCTTCT--TC
T ss_pred --------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhhccCCCccEEEeCCCCCCCc--CC
Confidence 01122334689999999999999999999999998864 56789999999999775 34
Q ss_pred hHHHHHHHHHHHHHhhC
Q 004141 755 DFESFLNIGLWFKKYCK 771 (771)
Q Consensus 755 ~~~~~~~i~~fl~~~L~ 771 (771)
..++.+.+.+||+++|.
T Consensus 195 ~~~l~~~v~~~l~~~l~ 211 (218)
T d2i3da1 195 VDELMGECEDYLDRRLN 211 (218)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45788999999999873
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.77 E-value=4.5e-19 Score=187.13 Aligned_cols=248 Identities=15% Similarity=0.173 Sum_probs=146.1
Q ss_pred ccCCCceEEEEEEe--cCCCCCCCCCcEEEEEcCCCCCCCCCcc------hHHHHHHHHCCcEEEEECCCCCCCCChhhh
Q 004141 514 TKGAQKPFEAIFVS--SSHKKDCSCDPLIVVLHGGPHSVSLSSY------SKSLAFLSSVGYSLLIVNYRGSLGFGEEAL 585 (771)
Q Consensus 514 ~~~~g~~l~~~~~~--P~~~~~~~~~p~vv~~HGg~~~~~~~~~------~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~ 585 (771)
+..||..|..+.+. +.+....+++|+||++||.+.+.. .| ...+..|+++||.|+++|+||.+.......
T Consensus 33 ~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~--~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~G~S~~~~~ 110 (377)
T d1k8qa_ 33 VTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASAT--NWISNLPNNSLAFILADAGYDVWLGNSRGNTWARRNLY 110 (377)
T ss_dssp ECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGG--GGSSSCTTTCHHHHHHHTTCEEEECCCTTSTTSCEESS
T ss_pred EcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccchh--HHhhcCccchHHHHHHHCCCEEEEEcCCCCCCCCCCCC
Confidence 34567777665443 333345667899999999765532 23 236788999999999999999544322110
Q ss_pred hc-CCCC---c--cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEe---cCCccchhhh
Q 004141 586 QS-LPGK---V--GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---RNPLCNLALM 656 (771)
Q Consensus 586 ~~-~~~~---~--~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~---~~p~~~~~~~ 656 (771)
.. .... + ......|+.++++++.+.. ..+++.|+||||||.+++.++.++|+.++.+++ .+|.......
T Consensus 111 ~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~~--g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~ 188 (377)
T d1k8qa_ 111 YSPDSVEFWAFSFDEMAKYDLPATIDFILKKT--GQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVATVKYT 188 (377)
T ss_dssp SCTTSTTTTCCCHHHHHHTHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCSCCSSC
T ss_pred CCCcchhhccCCHHHHhhhhHHHHHHHHHHHc--CCCCEEEEEecchHHHHHHHHHhhhhhhhhceeEeeccccccccch
Confidence 00 0001 1 1123568888999988763 357899999999999999999999876554443 3332211000
Q ss_pred ----hcCCCC---------------Ccchhhh----------------------hc--cCCCC-----ccC-CCCCC---
Q 004141 657 ----VGTTDI---------------PDWCYVE----------------------SY--GSKGK-----DSF-TESPS--- 684 (771)
Q Consensus 657 ----~~~~~~---------------~~~~~~~----------------------~~--~~~~~-----~~~-~~~~~--- 684 (771)
...... +...... .. ..... ..+ ...+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (377)
T d1k8qa_ 189 ETLINKLMLVPSFLFKLIFGNKIFYPHHFFDQFLATEVCSRETVDLLCSNALFIICGFDTMNLNMSRLDVYLSHNPAGTS 268 (377)
T ss_dssp CSGGGGGGTSCHHHHHHHSCSSEESCCCHHHHHHHHHTTTBTTTHHHHHHHHHHHHCCCGGGSCGGGHHHHHTTCCCCEE
T ss_pred hhHHHHHHhcchhhhhhhhhhhhccchhHHHHhhhhhhcchhhhhHHHHhhhhhhcCCCcccccHHHhhhhhhcccccch
Confidence 000000 0000000 00 00000 000 00000
Q ss_pred ------------------------hhhHHHHh-hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 685 ------------------------VEDLTRFH-SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 685 ------------------------~~~~~~~~-~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
......+. ...+...+.++++|+|+++|++|.+++++..+.+.+.+.. .+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~vPvL~i~G~~D~~~~~~~~~~l~~~lp~---~~~~ 345 (377)
T d1k8qa_ 269 VQNVLHWSQAVKSGKFQAFDWGSPVQNMMHYHQSMPPYYNLTDMHVPIAVWNGGNDLLADPHDVDLLLSKLPN---LIYH 345 (377)
T ss_dssp HHHHHHHHHHHHHCSCBCCCCSSHHHHHHHHSSSSCCBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHTTCTT---EEEE
T ss_pred HHHHHHHHHHHhcCcchhccchhhhhhhhhhcccCchhhhHhhCCCCEEEEEeCCCCccCHHHHHHHHHHCCC---CeEE
Confidence 00000000 1122234678899999999999999999988887776654 2678
Q ss_pred EEeCCCCcc--CCCCCChHHHHHHHHHHHHH
Q 004141 740 IVFPNDVHG--IERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~--~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++||. +...+...+++..|++||++
T Consensus 346 ~~i~~~GH~d~~~~~~a~~~v~~~I~~fl~~ 376 (377)
T d1k8qa_ 346 RKIPPYNHLDFIWAMDAPQAVYNEIVSMMGT 376 (377)
T ss_dssp EEETTCCTTHHHHCTTHHHHTHHHHHHHHHT
T ss_pred EEeCCCCCcchhhccchHHHHHHHHHHHHhc
Confidence 899999996 23456667889999999974
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.7e-18 Score=166.15 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=129.1
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC------CCCChhhhhcCCCCc-cccc---hhhHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS------LGFGEEALQSLPGKV-GSQD---VNDVLT 602 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~------~~~g~~~~~~~~~~~-~~~~---~~D~~~ 602 (771)
..+..++||++||.+.+ ...|......+...++.+++++-+.. ...+..|........ ...+ +++..+
T Consensus 17 ~~~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~ 94 (229)
T d1fj2a_ 17 ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAE 94 (229)
T ss_dssp SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHH
Confidence 34556899999996554 23444455556677899999874310 001111211100000 1111 222233
Q ss_pred HHHHHHH---cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccC
Q 004141 603 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 679 (771)
Q Consensus 603 ~i~~l~~---~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (771)
.++.+++ +..++.+||+++|+|+||.+++.++.++|+.++++++.++........ ..
T Consensus 95 ~l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~--------------~~------ 154 (229)
T d1fj2a_ 95 NIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF--------------PQ------ 154 (229)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------------CS------
T ss_pred HHHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccc--------------cc------
Confidence 3333222 234899999999999999999999999999999999888753211100 00
Q ss_pred CCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhC--CCCEEEEEeCCCCccCCCCCChHH
Q 004141 680 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREK--GVETKVIVFPNDVHGIERPQSDFE 757 (771)
Q Consensus 680 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~--g~~~~~~~~~~~~H~~~~~~~~~~ 757 (771)
++ ......++|+|++||++|++||.+.+++.++.|++. +.++++..|++.+|.+. .+
T Consensus 155 ---------------~~-~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~~~~~~v~~~~~~g~gH~i~-----~~ 213 (229)
T d1fj2a_ 155 ---------------GP-IGGANRDISILQCHGDCDPLVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSC-----QQ 213 (229)
T ss_dssp ---------------SC-CCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHHHHSCGGGEEEEEETTCCSSCC-----HH
T ss_pred ---------------cc-cccccccCceeEEEcCCCCeeCHHHHHHHHHHHHhcCCCCceEEEEeCCCCCccC-----HH
Confidence 00 001123579999999999999999999999999873 56899999999999875 45
Q ss_pred HHHHHHHHHHHhh
Q 004141 758 SFLNIGLWFKKYC 770 (771)
Q Consensus 758 ~~~~i~~fl~~~L 770 (771)
.+..+.+||+++|
T Consensus 214 ~~~~~~~wL~~~L 226 (229)
T d1fj2a_ 214 EMMDVKQFIDKLL 226 (229)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhHC
Confidence 6789999999987
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.77 E-value=4.1e-18 Score=163.40 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=131.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcC-CCCcc----ccchhhHHHHHHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 607 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~-~~~~~----~~~~~D~~~~i~~l 607 (771)
+.+++|+||++||.+.+ ...|...++.|+ .++.+++++.+.....+..+.... ..... ..+.+++.+.|+.+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 19 GKESRECLFLLHGSGVD--ETTLVPLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp TSSCCCEEEEECCTTBC--TTTTHHHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 45678999999997655 345666777775 479999998653222222111110 11000 11245566667777
Q ss_pred HHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh
Q 004141 608 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 608 ~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
.++..+|.+||+|+|+|+||++++.++.++|++++++++.+|.....
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------------------- 142 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------------------- 142 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS---------------------------------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc---------------------------------
Confidence 77767899999999999999999999999999999999988853110
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
+.......++|++++||++|++++ +.+.++.+.|++.|.++++.++++ +|.+. .+....+.+||.
T Consensus 143 --------~~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~G~~v~~~~~~g-gH~i~-----~~~~~~~~~wl~ 207 (209)
T d3b5ea1 143 --------HVPATDLAGIRTLIIAGAADETYG-PFVPALVTLLSRHGAEVDARIIPS-GHDIG-----DPDAAIVRQWLA 207 (209)
T ss_dssp --------SCCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHHHTTCEEEEEEESC-CSCCC-----HHHHHHHHHHHH
T ss_pred --------cccccccccchheeeeccCCCccC-HHHHHHHHHHHHCCCCeEEEEECC-CCCCC-----HHHHHHHHHHhC
Confidence 000112345799999999999997 677889999999999999999987 79885 345677888884
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.76 E-value=6.7e-18 Score=169.27 Aligned_cols=229 Identities=15% Similarity=0.186 Sum_probs=136.3
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
..||.+++...+ + ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ...
T Consensus 5 t~dG~~l~y~~~------G--~g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~ 66 (274)
T d1a8qa_ 5 TRDGVEIFYKDW------G--QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPV-----WDG 66 (274)
T ss_dssp CTTSCEEEEEEE------C--SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSC
T ss_pred CcCCCEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc-----ccc
Confidence 346777775543 1 23568999997665 4567888888999999999999999 4444221 111
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcCCCCCcch-------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWC------- 666 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~------- 666 (771)
....+....+..+++. +..+++.++||||||.+++.++++ +|++++++++.++.................
T Consensus 67 ~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (274)
T d1a8qa_ 67 YDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVFDALK 144 (274)
T ss_dssp CSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHHHHHHH
Confidence 2344444444444444 245789999999999988886654 588999988887643221110000000000
Q ss_pred ---------h----hhhccCCCCccCCCCCChhh-------------------HHHHhhcCcccccCCCCCcEEEEeeCC
Q 004141 667 ---------Y----VESYGSKGKDSFTESPSVED-------------------LTRFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 667 ---------~----~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~sp~~~~~~i~~P~lii~G~~ 714 (771)
+ ...+.. ............ ...+...+....+.++++|+|+++|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~G~~ 222 (274)
T d1a8qa_ 145 NGVLTERSQFWKDTAEGFFS--ANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKFDIPTLVVHGDD 222 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTCCSCEEEEEETT
T ss_pred hhhhhhhHHHhhhhhhhhhh--ccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhccceeeeeccCC
Confidence 0 000000 000000000000 011112223345678999999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCC-CCChHHHHHHHHHHHHH
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIER-PQSDFESFLNIGLWFKK 768 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~-~~~~~~~~~~i~~fl~~ 768 (771)
|..+|++...+..+.+ -.++++++++++||.... .+....+.+.+.+||++
T Consensus 223 D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~k 274 (274)
T d1a8qa_ 223 DQVVPIDATGRKSAQI---IPNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLNK 274 (274)
T ss_dssp CSSSCGGGTHHHHHHH---STTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHh---CCCCEEEEECCCCCcccccccCHHHHHHHHHHHHCc
Confidence 9999987654433332 123789999999998654 34455677888899864
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.75 E-value=4e-18 Score=172.09 Aligned_cols=216 Identities=16% Similarity=0.215 Sum_probs=129.2
Q ss_pred CcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.|+||++||.+.+. ..|.. .+..+.+.||.|+++|+|| +|.+..... ......+..+.+..+++. +
T Consensus 30 G~~ivllHG~~~~~--~~~~~~~~~l~~~~~~g~~v~~~D~~G---~G~S~~~~~----~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 30 GETVIMLHGGGPGA--GGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVVM----DEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp SSEEEEECCCSTTC--CHHHHHTTTHHHHHHTTCEEEEECCTT---STTSCCCCC----SSCHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCCCCCh--hHHHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccccc----cccccchhhhhccccccc--c
Confidence 37899999976553 23332 2445678999999999999 554422111 111122223333333333 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcch-hhhhccCC-------CCc---cCCCC
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC-YVESYGSK-------GKD---SFTES 682 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~---~~~~~ 682 (771)
+.+++.++|||+||.+++.++.++|++++++|+.+|..-.............. ........ ... .....
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 44689999999999999999999999999999988753211100000000000 00000000 000 00000
Q ss_pred CChhhH--------------HH---------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 683 PSVEDL--------------TR---------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 683 ~~~~~~--------------~~---------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
...+.. .. ....+....+.++++|+|+++|++|..+|++.++.+.+.+. ++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~----~~~~ 254 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNID----DARL 254 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSS----SEEE
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCC----CCEE
Confidence 000000 00 00112334567889999999999999999999988887764 3799
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 740 IVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++||.+.. +...++.+.+.+||++
T Consensus 255 ~~i~~~gH~~~~-e~p~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 255 HVFSKCGHWAQW-EHADEFNRLVIDFLRH 282 (283)
T ss_dssp EEESSCCSCHHH-HTHHHHHHHHHHHHHH
T ss_pred EEECCCCCchHH-hCHHHHHHHHHHHHhC
Confidence 999999997653 3455788889999975
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.74 E-value=3.6e-17 Score=163.86 Aligned_cols=232 Identities=15% Similarity=0.180 Sum_probs=140.1
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+..||.+|++..+.|+ ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~-----~~ 67 (275)
T d1a88a_ 4 TTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQP-----ST 67 (275)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EecCCCEEEEEEecCC------CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccc-----cc
Confidence 4567899998888764 23678999997765 4468888899999999999999999 5544321 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcCh-hHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC--CCcch----
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH-GGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD--IPDWC---- 666 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~-GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~--~~~~~---- 666 (771)
....+++.+.+..+++. ++.+++.++|||+ ||.++..++.++|++++++|+.++............ .....
T Consensus 68 ~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (275)
T d1a88a_ 68 GHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVPPVMVKSDTNPDGLPLEVFDEF 145 (275)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCCSCCBCBTTBTTSBCHHHHHHH
T ss_pred ccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccccccccchhhhhhhhhhhhhhh
Confidence 22344444444444443 2446788899887 666677778899999999998876432111000000 00000
Q ss_pred -----------hhhhccCCCCcc--CCCCCChhhHH-------------------HHhhcCcccccCCCCCcEEEEeeCC
Q 004141 667 -----------YVESYGSKGKDS--FTESPSVEDLT-------------------RFHSKSPISHISKVKTPTIFLLGAQ 714 (771)
Q Consensus 667 -----------~~~~~~~~~~~~--~~~~~~~~~~~-------------------~~~~~sp~~~~~~i~~P~lii~G~~ 714 (771)
+........... ........... .+........+.++++|+|+++|++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~ 225 (275)
T d1a88a_ 146 RAALAANRAQFYIDVPSGPFYGFNREGATVSQGLIDHWWLQGMMGAANAHYECIAAFSETDFTDDLKRIDVPVLVAHGTD 225 (275)
T ss_dssp HHHHHHCHHHHHHHHHHTTTTTTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETT
T ss_pred hhhhhhhhHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhHHHHhhccccceeecCC
Confidence 000000000000 00000000000 0111222234567899999999999
Q ss_pred CCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 715 DLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 715 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
|..+|.+...+....+ ..++++++++++||.+... ...++.+.|.+||+
T Consensus 226 D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~Fl~ 274 (275)
T d1a88a_ 226 DQVVPYADAAPKSAEL---LANATLKSYEGLPHGMLST-HPEVLNPDLLAFVK 274 (275)
T ss_dssp CSSSCSTTTHHHHHHH---STTEEEEEETTCCTTHHHH-CHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHHh-CHHHHHHHHHHHHc
Confidence 9999987655444333 2348999999999976543 45678899999986
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.74 E-value=1.1e-17 Score=167.47 Aligned_cols=230 Identities=17% Similarity=0.154 Sum_probs=141.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
-+|..+++..+ ++ .|+||++||.+..... ..|...+..| +.||.|+++|+|| +|.+... ....
T Consensus 10 ~~G~~~~Y~~~------G~--G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G---~G~S~~~----~~~~ 73 (271)
T d1uk8a_ 10 AAGVLTNYHDV------GE--GQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRP----ENYN 73 (271)
T ss_dssp ETTEEEEEEEE------CC--SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCC----TTCC
T ss_pred ECCEEEEEEEE------ee--CCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCC---CCCcccc----cccc
Confidence 36777875543 22 3678999997654321 1233455566 4699999999999 5544211 1122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-------hhhcCCCCCcc--
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDW-- 665 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-------~~~~~~~~~~~-- 665 (771)
...++....+..+.+. .+.+++.|+||||||.+++.++.++|+.++++|+.++..... ...........
T Consensus 74 ~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (271)
T d1uk8a_ 74 YSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMR 151 (271)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHH
T ss_pred ccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHHH
Confidence 2456667777777766 345789999999999999999999999999999887654210 00000000000
Q ss_pred hhhhhccCCC--------------------CccC-CCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHH
Q 004141 666 CYVESYGSKG--------------------KDSF-TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 724 (771)
Q Consensus 666 ~~~~~~~~~~--------------------~~~~-~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~ 724 (771)
.....+.... ...+ ....................+.++++|+|+++|++|..+|++.++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~ 231 (271)
T d1uk8a_ 152 NLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSL 231 (271)
T ss_dssp HHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHH
T ss_pred HHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHHHHH
Confidence 0000000000 0000 000000000001112223456789999999999999999999888
Q ss_pred HHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 725 QYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 725 ~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.+.+.+.. +++++++++||.+.. +...++.+.|.+||++
T Consensus 232 ~~~~~~~~----~~~~~~~~~gH~~~~-e~p~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 232 RLGELIDR----AQLHVFGRCGHWTQI-EQTDRFNRLVVEFFNE 270 (271)
T ss_dssp HHHHHCTT----EEEEEESSCCSCHHH-HTHHHHHHHHHHHHHT
T ss_pred HHHHhCCC----CEEEEECCCCCchHH-HCHHHHHHHHHHHHhc
Confidence 88777643 789999999997653 3456788899999985
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-17 Score=172.45 Aligned_cols=232 Identities=17% Similarity=0.198 Sum_probs=144.5
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
.+|.++++... + ..|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.. +......
T Consensus 19 ~~g~~i~y~~~------G--~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~---~~~~~~~ 82 (322)
T d1zd3a2 19 KPRVRLHFVEL------G--SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSA---PPEIEEY 82 (322)
T ss_dssp ETTEEEEEEEE------C--CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTT---STTSCC---CSCGGGG
T ss_pred CCCCEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccc---cccccc---ccccccc
Confidence 35777776543 2 23789999997765 4467888999999999999999999 554422 1112223
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchh-------------------hh
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------------------LM 656 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~-------------------~~ 656 (771)
..+++...+..+++. ++.+++.++||||||.+++.+|.++|++++++|+.++..... .+
T Consensus 83 ~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (322)
T d1zd3a2 83 CMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSPLESIKANPVFDYQLY 160 (322)
T ss_dssp SHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCCCCSSSCHHHHHHTCGGGHHHHH
T ss_pred cccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcccccccccccchhhhhhccchhhhHHh
Confidence 456666666666665 346789999999999999999999999999999876432100 00
Q ss_pred hc----------------------CCCCC---cchhhhhccCC--C--CccCCCCCChhhHHHH----------------
Q 004141 657 VG----------------------TTDIP---DWCYVESYGSK--G--KDSFTESPSVEDLTRF---------------- 691 (771)
Q Consensus 657 ~~----------------------~~~~~---~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~---------------- 691 (771)
.. ..... ........... . ...............+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (322)
T d1zd3a2 161 FQEPGVAEAELEQNLSRTFKSLFRASDESVLSMHKVCEAGGLFVNSPEEPSLSRMVTEEEIQFYVQQFKKSGFRGPLNWY 240 (322)
T ss_dssp TTSTTHHHHHHHHTHHHHHHHHSCCTTSCCCCTTSHHHHTSSSTTSCSSCCCCTTCCHHHHHHHHHHHHHHTTHHHHHTT
T ss_pred hhccchhhhhhhhhHHHHHHHHhhccchhhhhHHHHhhhhccccccccchhhhhhccHHHHHHHHHHHhhcccccccccc
Confidence 00 00000 00000000000 0 0000000011110000
Q ss_pred ------hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004141 692 ------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 692 ------~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 765 (771)
....+.....++++|+|+++|++|..++++..+.+.+.+. +.++++++++||.... +...++.+.|.+|
T Consensus 241 ~~~~~~~~~~~~~~~~~i~~Pvl~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~i~~~gH~~~~-e~p~~v~~~i~~F 315 (322)
T d1zd3a2 241 RNMERNWKWACKSLGRKILIPALMVTAEKDFVLVPQMSQHMEDWIP----HLKRGHIEDCGHWTQM-DKPTEVNQILIKW 315 (322)
T ss_dssp SCHHHHHHHHHTTTTCCCCSCEEEEEETTCSSSCGGGGTTGGGTCT----TCEEEEETTCCSCHHH-HSHHHHHHHHHHH
T ss_pred cccccccccchhhhcccCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCchHH-hCHHHHHHHHHHH
Confidence 0111223356789999999999999999887766655443 4788999999997653 3445788899999
Q ss_pred HHHhh
Q 004141 766 FKKYC 770 (771)
Q Consensus 766 l~~~L 770 (771)
|+.+-
T Consensus 316 L~~~~ 320 (322)
T d1zd3a2 316 LDSDA 320 (322)
T ss_dssp HHHHT
T ss_pred HhhcC
Confidence 99864
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.74 E-value=6.6e-17 Score=162.71 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=160.9
Q ss_pred EeCCC--CCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 105 VPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 105 ~~SPd--G~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
.+||| |++|||+++.+ +|+++ ++++.++++...... ..++|||||++|||........
T Consensus 5 ~~sPdi~G~~v~f~~~~d-----l~~~d~~~g~~~~Lt~~~~~~----------~~p~~SPDG~~iaf~~~~~~~~---- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDD-----LWEHDLKSGSTRKIVSNLGVI----------NNARFFPDGRKIAIRVMRGSSL---- 65 (281)
T ss_dssp CEEEEEETTEEEEEETTE-----EEEEETTTCCEEEEECSSSEE----------EEEEECTTSSEEEEEEEESTTC----
T ss_pred ccCCCCCCCEEEEEeCCc-----EEEEECCCCCEEEEecCCCcc----------cCEEECCCCCEEEEEEeeCCCC----
Confidence 56899 99999997754 99999 788888888765444 5899999999999987543110
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-------CccceEEEecCCCCC
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-------LSVGQVVWAPLNEGL 254 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-------~~~~~~~wspDg~~~ 254 (771)
...+||++++.+++.++|+ ... .....+.|||||+.
T Consensus 66 ----------------------------------~~~~i~~~~~~~g~~~~lt--~~~~~~~~~~~~~~~~~~spdg~~- 108 (281)
T d1k32a2 66 ----------------------------------NTADLYFYNGENGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNL- 108 (281)
T ss_dssp ----------------------------------CEEEEEEEETTTTEEEECC--CCCEEEETTEECSEEEEECTTCCE-
T ss_pred ----------------------------------CceEEEEEEecCCceEEee--ecCCCccCccccccccccCCCCCE-
Confidence 2368999999999999994 322 23457899999998
Q ss_pred ccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEE
Q 004141 255 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 255 ~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+|+...... .....++.++. +++..+..... ...+.|++||+.+++.
T Consensus 109 ---l~~~~~~~~~---------~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 156 (281)
T d1k32a2 109 ---IISTDAMQPF---------SSMTCLYRVEN-----------------DGINFVPLNLG---PATHILFADGRRVIGR 156 (281)
T ss_dssp ---EEEECTTSSS---------TTCCEEEEEEG-----------------GGTEEEECCSC---SCSEEEEETTEEEEEE
T ss_pred ---EEEEEccCCC---------ccceeeeeecC-----------------CCceeEEecCC---ccceeeecCCCeEEEe
Confidence 9987643321 12235667776 55655554433 3457788888888887
Q ss_pred ecCCCCCC-CCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCee
Q 004141 335 SAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 413 (771)
Q Consensus 335 ~~~~~~~~-g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~ 413 (771)
........ ................... ....... .....+.|+++ .+++.....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----------~~~~~~~~~~~--~~~~~~~~~~~~ 214 (281)
T d1k32a2 157 NTFELPHWKGYRGGTRGKIWIEVNSGAF----------KKIVDMS----------THVSSPVIVGH--RIYFITDIDGFG 214 (281)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEE----------EEEECCS----------SCCEEEEEETT--EEEEEECTTSSC
T ss_pred eccccceeeeeccCCcceeeeeccccce----------eeccCCc----------cccceeeeecc--ccceeccccccc
Confidence 66542100 0000000111111111110 0000000 01123345544 577777777888
Q ss_pred EEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 414 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 414 ~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
+||.+|+++++.++|+.... .....+|+||+.|+|... .+||++++.+++
T Consensus 215 ~l~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~ 264 (281)
T d1k32a2 215 QIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK 264 (281)
T ss_dssp EEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC
T ss_pred ceEEEeCCCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC
Confidence 99999999999999987654 344679999999998663 369999887654
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.73 E-value=1.6e-17 Score=166.00 Aligned_cols=231 Identities=15% Similarity=0.165 Sum_probs=138.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC-CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~-~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
+-+|.++++... ++ .|.||++||++..... ..|...+..| +.||.|+++|+|| +|.+... ..
T Consensus 8 ~~dg~~l~y~~~------G~--g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G---~G~S~~~-----~~ 70 (268)
T d1j1ia_ 8 NAGGVETRYLEA------GK--GQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLG---FGKTAKP-----DI 70 (268)
T ss_dssp EETTEEEEEEEE------CC--SSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCC-----SS
T ss_pred EECCEEEEEEEE------cC--CCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccc---cccccCC-----cc
Confidence 446888875432 22 2568999997654211 2345556666 5699999999999 5544211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC-CCCCcc-----hh
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDW-----CY 667 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~-~~~~~~-----~~ 667 (771)
....++....+..+++.-.+ .+++.++|||+||.+++.++.++|++++++|+.+|.......... .....+ ..
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 22345555555555544222 257999999999999999999999999999998875321111000 000000 00
Q ss_pred hhhccCCCCccCCCCCCh-h----------h-------HHHHh----hcCcccccCCCCCcEEEEeeCCCCccCcHHHHH
Q 004141 668 VESYGSKGKDSFTESPSV-E----------D-------LTRFH----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 725 (771)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~-~----------~-------~~~~~----~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~ 725 (771)
...........+...... . . ...+. .......+.++++|+|+++|++|..+|++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~ 229 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 229 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHHHHH
Confidence 000000000000000000 0 0 00000 111123467889999999999999999988888
Q ss_pred HHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 726 YARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 726 ~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+.+.+.+ +++++++++||.+.. +...++.+.+.+||.+
T Consensus 230 ~~~~~~~----~~~~~~~~~gH~~~~-e~p~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 230 FLDLIDD----SWGYIIPHCGHWAMI-EHPEDFANATLSFLSL 267 (268)
T ss_dssp HHHHCTT----EEEEEESSCCSCHHH-HSHHHHHHHHHHHHHH
T ss_pred HHHhCCC----CEEEEECCCCCchHH-hCHHHHHHHHHHHHcC
Confidence 7776643 899999999997653 3456888999999976
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.73 E-value=2.2e-18 Score=174.66 Aligned_cols=228 Identities=13% Similarity=0.195 Sum_probs=142.5
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.+-+|.++++..+-|+ ..|+||++||++.+ ...|...+..| ..||.|+++|+|| +|.+... ..
T Consensus 12 i~~~g~~i~y~~~G~~------~~p~lvllHG~~~~--~~~~~~~~~~L-~~~~~vi~~d~~G---~G~S~~~-----~~ 74 (291)
T d1bn7a_ 12 VEVLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHV-APSHRCIAPDLIG---MGKSDKP-----DL 74 (291)
T ss_dssp EEETTEEEEEEEESCS------SSSCEEEECCTTCC--GGGGTTTHHHH-TTTSCEEEECCTT---STTSCCC-----SC
T ss_pred EEECCEEEEEEEeCCC------CCCeEEEECCCCCC--HHHHHHHHHHH-hcCCEEEEEeCCC---Ccccccc-----cc
Confidence 3446888987776543 34679999997765 34577777777 4599999999999 5544211 11
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhc-------------CC
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-------------TT 660 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-------------~~ 660 (771)
....+++.+.+..+++. ++.+++.|+||||||.+++.++.++|+.++++++.++......... ..
T Consensus 75 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
T d1bn7a_ 75 DYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRTA 152 (291)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECCCBCSGGGSCHHHHHHHHHHTST
T ss_pred ccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccccCCccchhhhhhhhhHHHHHhhh
Confidence 23456666666666665 3457899999999999999999999999999988664432110000 00
Q ss_pred CCC------cchhhhhccCCCCccCCCCCChhhHHHHh-----------------hc--------------CcccccCCC
Q 004141 661 DIP------DWCYVESYGSKGKDSFTESPSVEDLTRFH-----------------SK--------------SPISHISKV 703 (771)
Q Consensus 661 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------------sp~~~~~~i 703 (771)
... ...+...... ..............+. .. .....+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 229 (291)
T d1bn7a_ 153 DVGRELIIDQNAFIEGVLP---KCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMNWLHQS 229 (291)
T ss_dssp THHHHHHTTSCHHHHTHHH---HTCSSCCCHHHHHHHHGGGSSGGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHHC
T ss_pred hhHHHhhhhhhhhHHhhhh---hhccccchHHHHHHHHHHhcchhhhHHHHHHHHHhhhhhhhchhhhhhhhhhhhhhcC
Confidence 000 0000000000 0000000000000000 00 011224578
Q ss_pred CCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 704 KTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 704 ~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++|+|+++|++|..+|++.+..+.+.+.+ .++++++++||.+... ...++.+.+.+||+.
T Consensus 230 ~~P~lii~G~~D~~~~~~~~~~~~~~~~~----~~~~~i~~~gH~~~~e-~p~~v~~~i~~fL~~ 289 (291)
T d1bn7a_ 230 PVPKLLFWGTPGVLIPPAEAARLAESLPN----CKTVDIGPGLHYLQED-NPDLIGSEIARWLPG 289 (291)
T ss_dssp CSCEEEEEEEECSSSCHHHHHHHHHHSTT----EEEEEEEEESSCGGGT-CHHHHHHHHHHHSGG
T ss_pred CCCEEEEEeCCCCCcCHHHHHHHHHHCCC----CEEEEECCCCCchHHh-CHHHHHHHHHHHHHh
Confidence 89999999999999999988888777643 7899999999976533 445788888888863
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=1.3e-16 Score=159.62 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=140.3
Q ss_pred ccccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC
Q 004141 512 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 591 (771)
Q Consensus 512 ~~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~ 591 (771)
+|...||.++++... + ..|.||++||.+.+ ...|...+..|.++||.|+++|+|| +|.+...
T Consensus 2 ~f~~~dG~~i~y~~~------G--~g~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~----- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW------G--SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQP----- 63 (273)
T ss_dssp EEECTTSCEEEEEEE------S--CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----
T ss_pred EEEeeCCcEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechh---cCccccc-----
Confidence 345668888876543 2 23568899997765 4468888899999999999999999 5544221
Q ss_pred ccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHH-HHhhCCCceeEEEecCCccchhhhhcCCCCCcch----
Q 004141 592 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---- 666 (771)
Q Consensus 592 ~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~-~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~---- 666 (771)
......+++.+.+..+++. ++.++..++|||+||.+++. ++..+|++++++++.++.................
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 141 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEVFD 141 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHHH
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhhhh
Confidence 1123455555555555554 34567889999998865555 5556799999988887653221100000000000
Q ss_pred ------------hhhhc-cCCCC--ccCCCCCChhhH-------------------HHHhhcCcccccCCCCCcEEEEee
Q 004141 667 ------------YVESY-GSKGK--DSFTESPSVEDL-------------------TRFHSKSPISHISKVKTPTIFLLG 712 (771)
Q Consensus 667 ------------~~~~~-~~~~~--~~~~~~~~~~~~-------------------~~~~~~sp~~~~~~i~~P~lii~G 712 (771)
....+ ..... ............ ..+...+....+.++++|+|+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~g 221 (273)
T d1a8sa_ 142 GIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKIDVPTLVVHG 221 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTCCSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhhccceEEEec
Confidence 00000 00000 000000000000 011122333456788999999999
Q ss_pred CCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 713 AQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 713 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
++|..+|.+....+.+.+.. .++++++|++||.+.. ++..++.+.|.+||+
T Consensus 222 ~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~-e~p~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 222 DADQVVPIEASGIASAALVK---GSTLKIYSGAPHGLTD-THKDQLNADLLAFIK 272 (273)
T ss_dssp TTCSSSCSTTTHHHHHHHST---TCEEEEETTCCSCHHH-HTHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCchHH-hCHHHHHHHHHHHcC
Confidence 99999998887777665532 3788899999997653 345578888999986
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.73 E-value=1e-17 Score=167.27 Aligned_cols=232 Identities=17% Similarity=0.195 Sum_probs=141.0
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
|...||.++++..+ + ..|+||++||++.+ ...|...+..|+++||.|+++|+|| +|.+.. ..
T Consensus 3 f~~~dG~~l~y~~~------G--~g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~-----~~ 64 (271)
T d1va4a_ 3 FVAKDGTQIYFKDW------G--SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQ-----PW 64 (271)
T ss_dssp EECTTSCEEEEEEE------S--SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCC-----CS
T ss_pred EEeECCeEEEEEEE------c--CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---cccccc-----cc
Confidence 44567888875443 1 23568899997765 4468888899999999999999999 554421 11
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHH-HHHhhCCCceeEEEecCCccchhhhhcCCC--CCcch---
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT-HLIGQAPDKFVAAAARNPLCNLALMVGTTD--IPDWC--- 666 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~-~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~--~~~~~--- 666 (771)
.....+++...+..+.+. ++.+++.++|||+||.+++ .++.++|++++++++.++............ .....
T Consensus 65 ~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (271)
T d1va4a_ 65 TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFAR 142 (271)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHHHHH
T ss_pred cccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhHHHH
Confidence 223455555555555554 3457899999999887665 456678999999998876543211000000 00000
Q ss_pred -----------hhhhccCCCCcc-CCCCCChh-------------------hHHHHhhcCcccccCCCCCcEEEEeeCCC
Q 004141 667 -----------YVESYGSKGKDS-FTESPSVE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQD 715 (771)
Q Consensus 667 -----------~~~~~~~~~~~~-~~~~~~~~-------------------~~~~~~~~sp~~~~~~i~~P~lii~G~~D 715 (771)
....+....... ........ ....+...+....+.++++|+|+++|++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~g~~D 222 (271)
T d1va4a_ 143 FKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGD 222 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHCCSCEEEEEETTC
T ss_pred HHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhcccceeecccCCC
Confidence 000000000000 00000000 00111122333456778999999999999
Q ss_pred CccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 716 LRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 716 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
..+|++...++.+.+.. .+++++++++||.+... ...++.+.|.+||++
T Consensus 223 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fL~k 271 (271)
T d1va4a_ 223 QIVPFETTGKVAAELIK---GAELKVYKDAPHGFAVT-HAQQLNEDLLAFLKR 271 (271)
T ss_dssp SSSCGGGTHHHHHHHST---TCEEEEETTCCTTHHHH-THHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhCC---CCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 99999888777665532 37889999999976533 455788888888864
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.73 E-value=1.7e-17 Score=163.69 Aligned_cols=217 Identities=17% Similarity=0.155 Sum_probs=135.1
Q ss_pred cEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCe
Q 004141 538 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 617 (771)
Q Consensus 538 p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 617 (771)
+.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+.... .......+....+..+.... ....+
T Consensus 3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G---~G~S~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRKI----EELRTLYDYTLPLMELMESL-SADEK 72 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCCG----GGCCSHHHHHHHHHHHHHTS-CSSSC
T ss_pred CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCC----CCCcchHHHHHHHhhhhhcc-ccccc
Confidence 678999997665 4468889999999999999999999 55442110 11123444444444444442 23467
Q ss_pred EEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh---------hcCCCCCcchhhhh--ccCC--CC--------
Q 004141 618 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM---------VGTTDIPDWCYVES--YGSK--GK-------- 676 (771)
Q Consensus 618 i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~---------~~~~~~~~~~~~~~--~~~~--~~-------- 676 (771)
+.++|||+||.+++.++.++|++++.+|+.++....... .............. .... ..
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGPK 152 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCHH
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccHH
Confidence 999999999999999999999999999988775421100 00000000000000 0000 00
Q ss_pred ---ccCCCCCChhhH--------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEE
Q 004141 677 ---DSFTESPSVEDL--------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKV 739 (771)
Q Consensus 677 ---~~~~~~~~~~~~--------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 739 (771)
............ ..+...........+++|+++++|++|..+|++..+.+.+.+.. +++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----~~~ 228 (258)
T d1xkla_ 153 FLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGV----TEA 228 (258)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCC----SEE
T ss_pred HHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccccccceeEeeecCCCCCCHHHHHHHHHHCCC----CEE
Confidence 000000001110 01111222234556779999999999999999988888877643 688
Q ss_pred EEeCCCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 740 IVFPNDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 740 ~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++++++||.... +...++.+.|++|+++|
T Consensus 229 ~~i~~~gH~~~~-e~P~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 229 IEIKGADHMAML-CEPQKLCASLLEIAHKY 257 (258)
T ss_dssp EEETTCCSCHHH-HSHHHHHHHHHHHHHHC
T ss_pred EEECCCCCchHH-hCHHHHHHHHHHHHHhc
Confidence 999999997653 34568889999999886
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.73 E-value=3.7e-18 Score=175.01 Aligned_cols=236 Identities=12% Similarity=0.082 Sum_probs=143.6
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
...+|.+++..-.-++ ...|+||++||.+.. ...|...+..|+++||.|+++|+|| +|.+... ....
T Consensus 29 ~~~~g~~~~y~~~G~~-----~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G---~G~S~~~---~~~~ 95 (310)
T d1b6ga_ 29 PGYPGLRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKP---VDEE 95 (310)
T ss_dssp TTCTTCEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEE---SCGG
T ss_pred cCCCCEEEEEEEecCC-----CCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecC---ccccccc---cccc
Confidence 3457888886655443 245899999997765 4567778889999999999999999 5554321 1112
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh-----h---hcCCCCCcc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----M---VGTTDIPDW 665 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~-----~---~~~~~~~~~ 665 (771)
....+++.+.+..+++. .+.+++.|+||||||.+++.+|.++|++++++|+.++...... + ........+
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACLMTDPVTQPAFSAFVTQPADGFT 173 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCCCCCTTTCTHHHHTTTSSTTTHH
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCccCCCcccchhHHHHhhcchhhhh
Confidence 23466666666666665 2457899999999999999999999999999999876532110 0 000000000
Q ss_pred h--hhhhccCCC-----CccCCCCCChhhHHHHh----------------hc---C-----------cccccCCCCCcEE
Q 004141 666 C--YVESYGSKG-----KDSFTESPSVEDLTRFH----------------SK---S-----------PISHISKVKTPTI 708 (771)
Q Consensus 666 ~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~----------------~~---s-----------p~~~~~~i~~P~l 708 (771)
. ......... ...............+. .. . ......++++|+|
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l 253 (310)
T d1b6ga_ 174 AWKYDLVTPSDLRLDQFMKRWAPTLTEAEASAYAAPFPDTSYQAGVRKFPKMVAQRDQACIDISTEAISFWQNDWNGQTF 253 (310)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHSTTCCHHHHHHHHTTCSSGGGCHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTCCSEEE
T ss_pred hhhhhhccchhhhhhhhhhccCccccHHHHHHHHhhcchhhhhhcchhhhhhhhhhhhhhhhhhhhhhHHhhcccCCCeE
Confidence 0 000000000 00000000000000000 00 0 0012357889999
Q ss_pred EEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 709 FLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 709 ii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++|++|..++++....+.+.+... .++++++++||.+. .+....+.+.+..|++.
T Consensus 254 ~i~G~~D~~~~~~~~~~~~~~~~~~---~~~~~i~~~GH~~~-~e~pe~v~~~i~~Fl~~ 309 (310)
T d1b6ga_ 254 MAIGMKDKLLGPDVMYPMKALINGC---PEPLEIADAGHFVQ-EFGEQVAREALKHFAET 309 (310)
T ss_dssp EEEETTCSSSSHHHHHHHHHHSTTC---CCCEEETTCCSCGG-GGHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCC---ccEEEECCCcCchh-hhCHHHHHHHHHHHHhC
Confidence 9999999999988877776665442 36778999999654 44444566677777763
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.72 E-value=2.2e-17 Score=155.25 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=118.3
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeE
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 618 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri 618 (771)
.||++||...+....-+...++.|+++||.|+++|++|.+. + ..++....++.+... ...++
T Consensus 3 ~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~~~---~------------~~~~~~~~l~~~~~~---~~~~~ 64 (186)
T d1uxoa_ 3 QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNPLQ---P------------RLEDWLDTLSLYQHT---LHENT 64 (186)
T ss_dssp EEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCTTS---C------------CHHHHHHHHHTTGGG---CCTTE
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCCCc---c------------hHHHHHHHHHHHHhc---cCCCc
Confidence 48999997665433335667889999999999999998322 1 245555555444433 45789
Q ss_pred EEEEcChhHHHHHHHHhhCCCce--eEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCc
Q 004141 619 TVVGGSHGGFLTTHLIGQAPDKF--VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 696 (771)
Q Consensus 619 ~l~G~S~GG~~a~~~a~~~p~~~--~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 696 (771)
+|+||||||++++.++.+++... .+++..++..... ..+.....+ .... .+
T Consensus 65 ~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~~--------~~~~-----------~~ 117 (186)
T d1uxoa_ 65 YLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSL--------PTLQMLDEF--------TQGS-----------FD 117 (186)
T ss_dssp EEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCC--------TTCGGGGGG--------TCSC-----------CC
T ss_pred EEEEechhhHHHHHHHHhCCccceeeEEeecccccccc--------hhhhhhhhh--------hccc-----------cc
Confidence 99999999999999999988643 4444444432111 001000000 0000 01
Q ss_pred ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCC--CChHHHHHHHHHHHHH
Q 004141 697 ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERP--QSDFESFLNIGLWFKK 768 (771)
Q Consensus 697 ~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~--~~~~~~~~~i~~fl~~ 768 (771)
.....++.+|+|++||++|++||+++++.+++.+. +++++++++||.+... ....+..+.+.+||.+
T Consensus 118 ~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~~-----~~~~~~~~~gH~~~~~~~~~~~~~~~~l~~~~~~ 186 (186)
T d1uxoa_ 118 HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQID-----AALYEVQHGGHFLEDEGFTSLPIVYDVLTSYFSK 186 (186)
T ss_dssp HHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHTT-----CEEEEETTCTTSCGGGTCSCCHHHHHHHHHHHHC
T ss_pred ccccccCCCCEEEEecCCCCCCCHHHHHHHHHHcC-----CEEEEeCCCCCcCccccCcccHHHHHHHHHHHcC
Confidence 11122345799999999999999999999988772 5899999999966432 2334677777777753
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.72 E-value=9.3e-17 Score=160.99 Aligned_cols=216 Identities=17% Similarity=0.241 Sum_probs=127.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+... ......+++.+.+..+++. ++.+
T Consensus 23 G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~~~~~~~~~dl~~~l~~--l~~~ 90 (277)
T d1brta_ 23 GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQP-----TTGYDYDTFAADLNTVLET--LDLQ 90 (277)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCC---CCccccc-----ccccchhhhhhhhhhhhhc--cCcc
Confidence 4679999997765 4468888888999999999999999 5544211 1112344555445444444 2456
Q ss_pred eEEEEEcChhH-HHHHHHHhhCCCceeEEEecCCccchhhhhcCCCC---Ccch--------------hhhhc-cC--CC
Q 004141 617 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI---PDWC--------------YVESY-GS--KG 675 (771)
Q Consensus 617 ri~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~---~~~~--------------~~~~~-~~--~~ 675 (771)
++.|+|||||| .++..++..+|++++++|+.+++............ +... ....+ .. ..
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVAAVKADRYAFYTGFFNDFYNL 170 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHTTH
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCCcccccchhhhhhhhhhhHHHHHHHhhhccchhhhhhcccccccc
Confidence 89999999996 55556677789999999988765422110000000 0000 00000 00 00
Q ss_pred CccCCCCCChhhHH-H------------H-----hhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCE
Q 004141 676 KDSFTESPSVEDLT-R------------F-----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVET 737 (771)
Q Consensus 676 ~~~~~~~~~~~~~~-~------------~-----~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~ 737 (771)
.............. . + ...+....+.++++|+++++|++|..++++...+..... ..+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~---~~~~ 247 (277)
T d1brta_ 171 DENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRIDVPALILHGTGDRTLPIENTARVFHKA---LPSA 247 (277)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGGCCSCEEEEEETTCSSSCGGGTHHHHHHH---CTTS
T ss_pred chhhhhhhhHHHhhhhhcccchhhhhhhhhhhhhhhhhHHHHHHhcCccceeEeecCCCCcCHHHHHHHHHHh---CCCC
Confidence 00000000000000 0 0 011122345678899999999999999987654433322 2347
Q ss_pred EEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 738 KVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 738 ~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++++||.+.. +...++.+.|.+||++
T Consensus 248 ~~~~i~~~gH~~~~-e~p~~~~~~i~~fL~k 277 (277)
T d1brta_ 248 EYVEVEGAPHGLLW-THAEEVNTALLAFLAK 277 (277)
T ss_dssp EEEEETTCCTTHHH-HTHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCchHH-hCHHHHHHHHHHHHCc
Confidence 89999999997654 3456788899999874
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.72 E-value=1.1e-17 Score=159.75 Aligned_cols=185 Identities=19% Similarity=0.187 Sum_probs=128.8
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHH---H
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI---D 609 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~---~ 609 (771)
..+..|+||++||++.. ...|...++.++ .++.|+.++.+... .+.... .........+.+++...++.+. +
T Consensus 13 ~~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 13 GVAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSE-HGAARF-FRRTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CCTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEE-TTEEES-SCBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEecccccc-cccccc-ccccCccccchhHHHHHHHHHHHHHH
Confidence 45678999999997654 234555666664 57889988765321 111110 0011112223334333333322 1
Q ss_pred --cCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh
Q 004141 610 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 687 (771)
Q Consensus 610 --~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (771)
...++.++++++|+|+||.+++.++..+|+.+.++++.++......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~-------------------------------- 135 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 135 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc--------------------------------
Confidence 1226789999999999999999999999999999999888642100
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
........+|++++||++|++||+++++++++.|++.|++++++++++ +|.+. .+.++.+.+||.
T Consensus 136 ---------~~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~~~g-gH~~~-----~~~~~~~~~wl~ 200 (203)
T d2r8ba1 136 ---------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKAQGGTVETVWHPG-GHEIR-----SGEIDAVRGFLA 200 (203)
T ss_dssp ---------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSEEEEEEESS-CSSCC-----HHHHHHHHHHHG
T ss_pred ---------ccccccccchhhccccCCCCcccHHHHHHHHHHHHHCCCCEEEEEECC-CCcCC-----HHHHHHHHHHHH
Confidence 001123357999999999999999999999999999999999999986 79875 356788999998
Q ss_pred Hh
Q 004141 768 KY 769 (771)
Q Consensus 768 ~~ 769 (771)
+|
T Consensus 201 ~~ 202 (203)
T d2r8ba1 201 AY 202 (203)
T ss_dssp GG
T ss_pred hc
Confidence 75
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.70 E-value=1e-16 Score=162.13 Aligned_cols=228 Identities=16% Similarity=0.230 Sum_probs=133.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 596 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~ 596 (771)
+|.++++... + ..|+||++||.+.+ ...|...+..|++ +|.|+++|+|| +|.+.... ........
T Consensus 16 ~~~~l~y~~~------G--~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~s~~~~-~~~~~~~~ 80 (293)
T d1ehya_ 16 PDVKIHYVRE------G--AGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRG---FGDSEKPD-LNDLSKYS 80 (293)
T ss_dssp SSCEEEEEEE------E--CSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTT---STTSCCCC-TTCGGGGC
T ss_pred CCEEEEEEEE------C--CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCc---ccCCcccc-cccccccc
Confidence 4677875443 1 24789999997765 4568888888854 89999999999 54433211 11222334
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--hhcCCCC-Ccch-------
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVGTTDI-PDWC------- 666 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~~~~~~~-~~~~------- 666 (771)
.+++...+..+++. ++.+++.++||||||.+++.++.++|+++.++|+.+|...... ....... ..+.
T Consensus 81 ~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (293)
T d1ehya_ 81 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQPDFGPVYFGLGHVHESWYSQFHQLD 158 (293)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSCTTC-----------CCHHHHHTTCH
T ss_pred chhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccCccccchhhhhhhhhhhhhhhhhccc
Confidence 56666666666665 3457899999999999999999999999999999887542100 0000000 0000
Q ss_pred ---------------hhhhccCCCCccCCCCCChhhHH-----------------HHhh---cCc----ccccCCCCCcE
Q 004141 667 ---------------YVESYGSKGKDSFTESPSVEDLT-----------------RFHS---KSP----ISHISKVKTPT 707 (771)
Q Consensus 667 ---------------~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~---~sp----~~~~~~i~~P~ 707 (771)
+...+... .............. .+.. ... ......+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 237 (293)
T d1ehya_ 159 MAVEVVGSSREVCKKYFKHFFDH-WSYRDELLTEEELEVHVDNCMKPDNIHGGFNYYRANIRPDAALWTDLDHTMSDLPV 237 (293)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH-TSSSSCCSCHHHHHHHHHHHTSTTHHHHHHHHHHHHSSSSCCCCCTGGGSCBCSCE
T ss_pred hhhhhhccchhHHHHHHHHhhhh-cccccccccHHHHHhhhhccccchhhhhhhhhhhhccccchhhhhhhhhhccCCce
Confidence 00000000 00000000001000 0000 000 01124567899
Q ss_pred EEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHH
Q 004141 708 IFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWF 766 (771)
Q Consensus 708 lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl 766 (771)
|+++|++|..+|.+...++.+.+ ..++++.+++++||.+..++ ...+.+.|.+||
T Consensus 238 lii~G~~D~~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e~-Pe~~~~~I~~Ff 292 (293)
T d1ehya_ 238 TMIWGLGDTCVPYAPLIEFVPKY---YSNYTMETIEDCGHFLMVEK-PEIAIDRIKTAF 292 (293)
T ss_dssp EEEEECCSSCCTTHHHHHHHHHH---BSSEEEEEETTCCSCHHHHC-HHHHHHHHHHHC
T ss_pred EEEEeCCCCCcCHHHHHHHHHHh---CCCCEEEEECCCCCchHHHC-HHHHHHHHHHhh
Confidence 99999999999988766655444 33589999999999765333 345566666665
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.70 E-value=7.2e-17 Score=165.55 Aligned_cols=121 Identities=17% Similarity=0.274 Sum_probs=85.8
Q ss_pred ccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 514 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 514 ~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
..+||.++++..+-.+ +.|.||++||++++.. .|... ..+...||.|+++|+|| +|.+... ....
T Consensus 17 ~~~dg~~i~y~~~G~~------~g~pvvllHG~~g~~~--~~~~~-~~~l~~~~~Vi~~D~rG---~G~S~~~---~~~~ 81 (313)
T d1azwa_ 17 KVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGC--NDKMR-RFHDPAKYRIVLFDQRG---SGRSTPH---ADLV 81 (313)
T ss_dssp ECSSSCEEEEEEEECT------TSEEEEEECSTTTTCC--CGGGG-GGSCTTTEEEEEECCTT---STTSBST---TCCT
T ss_pred EeCCCcEEEEEEecCC------CCCEEEEECCCCCCcc--chHHH-hHHhhcCCEEEEEeccc---cCCCCcc---cccc
Confidence 3456788877766432 3466889999876533 33322 23346799999999999 6655321 1222
Q ss_pred ccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 594 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 594 ~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
.....++.+.+..++++ ++.+++.|+||||||.+++.++.++|++++++++.++..
T Consensus 82 ~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 82 DNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp TCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred chhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 23456666666666666 345789999999999999999999999999999888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=6.6e-16 Score=166.40 Aligned_cols=297 Identities=11% Similarity=0.032 Sum_probs=175.7
Q ss_pred eEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcc
Q 004141 72 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTV 145 (771)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (771)
+.++++++.... ....++...+. ........|||||++|+|..+... ....+++.+ ..+..+.+..... .
T Consensus 37 g~i~~~~~~~~~-~~~l~~~~~~~--~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~-~ 112 (465)
T d1xfda1 37 GTVRLWNVETNT-STVLIEGKKIE--SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV-S 112 (465)
T ss_dssp SCEEEBCGGGCC-CEEEECTTTTT--TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC-C
T ss_pred CcEEEEECCCCC-EEEEEcCcccc--ccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC-C
Confidence 357777664332 22222222222 124567889999999999876432 234566666 5556555543321 1
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
.+ .+..+.|||||++|||+. ..+||+.+.
T Consensus 113 ~~------~l~~~~wSPDG~~iafv~---------------------------------------------~~nl~~~~~ 141 (465)
T d1xfda1 113 NA------KLQYAGWGPKGQQLIFIF---------------------------------------------ENNIYYCAH 141 (465)
T ss_dssp SC------CCSBCCBCSSTTCEEEEE---------------------------------------------TTEEEEESS
T ss_pred cc------ccceeeeccCCceEEEEe---------------------------------------------cceEEEEec
Confidence 11 124689999999999983 357888888
Q ss_pred cCCceeeccCCCCCC------------------ccceEEEecCCCCCccEEEEEeecCcce-e--------------eee
Q 004141 226 NSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFVGWSSETR-K--------------LGI 272 (771)
Q Consensus 226 ~~~~~~~l~~~~~~~------------------~~~~~~wspDg~~~~~~l~~~~~~~~~~-~--------------~g~ 272 (771)
.++...+++ ..+.. ....+.|||||++ |+|.......- . ...
T Consensus 142 ~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~----iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~ 216 (465)
T d1xfda1 142 VGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (465)
T ss_dssp SSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred CCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCe----EEEEEecccccceeecccccccccceeeee
Confidence 888777773 11110 1235679999999 99986432210 0 001
Q ss_pred eee----ccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCC--C-----CccccceeecCCCCEEEEEecCCCCC
Q 004141 273 KYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--S-----ISSAFFPRFSPDGKFLVFLSAKSSVD 341 (771)
Q Consensus 273 ~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~--~-----~~~~~~p~~SpDG~~l~f~~~~~~~~ 341 (771)
.|. .+....|+++|+ +++..+.+.. . ......+.|+||++.+++..++.
T Consensus 217 ~Yp~~G~~np~~~l~v~d~-----------------~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~--- 276 (465)
T d1xfda1 217 HYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA--- 276 (465)
T ss_dssp ECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---
T ss_pred eccccCCCCCceeEEEEec-----------------CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccc---
Confidence 111 112236888887 4444332221 1 12346689999998666666654
Q ss_pred CCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe--eeCCeeEEEEEE
Q 004141 342 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS--IWGSSQVIISVN 419 (771)
Q Consensus 342 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~--~~~~~~~l~~~d 419 (771)
.....|+++|..+++.+.+..... +.. .......+.|++||+.++|.. ..++..++|.+.
T Consensus 277 ----q~~~~i~~~d~~tg~~~~~~~e~~-----------~~w---v~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 277 ----QNVSILTLCDATTGVCTKKHEDES-----------EAW---LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp ----SCEEEEEEEETTTCCEEEEEEEEC-----------SSC---CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred ----cccceEEEEcCCCCcEEEEEEEcC-----------Cce---EeccCCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence 345679999998887644322211 100 001124678999999877653 345666777775
Q ss_pred C-------CCCcEEEecCCCCCcee-eEEeecCCEEEEEEeCCCCCC--eEEEEEecc
Q 004141 420 V-------SSGELLRITPAESNFSW-SLLTLDGDNIIAVSSSPVDVP--QVKYGYFVD 467 (771)
Q Consensus 420 ~-------~tg~~~~l~~~~~~~~~-~~~s~dg~~l~~~~~~~~~p~--~l~~~~~~~ 467 (771)
+ .++..++||.+...+.. ..++.+++.|+|++.. ..|. .||.+++..
T Consensus 339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~v~l~g 395 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYSANTVG 395 (465)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEEECSST
T ss_pred eccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEEEECCC
Confidence 3 34556788877654433 3578899999998753 3444 477766654
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.70 E-value=3.8e-17 Score=161.35 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=130.1
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
.|++||.+++ ...|...+..|+++||.|+++|+|| +|.+.... ......++..+.+..++... ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G---~G~S~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQI----EEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCC---CCCCCCCC----CCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 5889997765 4468888999999999999999999 55442211 11123455555554443332 2357899
Q ss_pred EEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhh----------hcCCCCCcchhhhhc-----------cCCC-Cc
Q 004141 620 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM----------VGTTDIPDWCYVESY-----------GSKG-KD 677 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~----------~~~~~~~~~~~~~~~-----------~~~~-~~ 677 (771)
|+||||||.+++.++.++|++++++|+.++....... ............... .... ..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTLLRE 154 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHHHHH
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheeccccCCcccchhhHhhhhhhhhhhhhhhHHHhhhccccccchhhhhhhhhhh
Confidence 9999999999999999999999999988765321100 000000000000000 0000 00
Q ss_pred cCCCCCChhhHH--------------HHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 678 SFTESPSVEDLT--------------RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 678 ~~~~~~~~~~~~--------------~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
............ .............+++|+++++|++|..+|++..+.+.+.+. +.++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~p----~~~~~~i~ 230 (256)
T d3c70a1 155 NLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFFTKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYK----PDKVYKVE 230 (256)
T ss_dssp HTSTTSCHHHHHHHHHHCCCBCCCHHHHTTSCCCCTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSC----CSEEEECC
T ss_pred hhhhhcchhhHHHhhhhhhhhhHHHhhhhhcchhhhhhccccceeEEeecCCCCCCHHHHHHHHHHCC----CCEEEEEC
Confidence 000000000000 000111112334457899999999999999888777766543 46899999
Q ss_pred CCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 744 NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 744 ~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
++||..... ...++.+.+.+|+++|
T Consensus 231 ~agH~~~~e-~P~~~~~~l~~~~~~~ 255 (256)
T d3c70a1 231 GGDHKLQLT-KTKEIAEILQEVADTY 255 (256)
T ss_dssp SCCSCHHHH-SHHHHHHHHHHHHHHC
T ss_pred CCCCchHHh-CHHHHHHHHHHHHHhc
Confidence 999976533 4557788888888775
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.69 E-value=4.6e-16 Score=154.21 Aligned_cols=191 Identities=11% Similarity=-0.063 Sum_probs=126.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC----cch-HHHHHHHHCC----cEEEEECCCCCCCCChhhhh
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS----SYS-KSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ 586 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~----~~~-~~~~~la~~G----~~Vv~~d~rG~~~~g~~~~~ 586 (771)
.+|.++++++|.|+++++++++|+||++||++...... ... .....+...+ +.+............
T Consensus 31 ~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 105 (255)
T d1jjfa_ 31 ATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPGI----- 105 (255)
T ss_dssp TTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTTC-----
T ss_pred CCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeecccccccccc-----
Confidence 35788999999999998889999999999976543221 111 1223333333 344444443321110
Q ss_pred cCCCCccc-cchhhHHHHHHHHHHc--CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCC
Q 004141 587 SLPGKVGS-QDVNDVLTAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP 663 (771)
Q Consensus 587 ~~~~~~~~-~~~~D~~~~i~~l~~~--~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~ 663 (771)
..... .....+.+.+.++.++ ..+++++++++|+|+||++++.++.++|++|+++++.+|..+.....
T Consensus 106 ---~~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~~~~~~------ 176 (255)
T d1jjfa_ 106 ---ADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPNE------ 176 (255)
T ss_dssp ---SCHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCHH------
T ss_pred ---cccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcCCcccc------
Confidence 00000 1112233334455443 33788999999999999999999999999999999988865321100
Q ss_pred cchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeC
Q 004141 664 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFP 743 (771)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 743 (771)
.....+.........|++|.||++|..++ ..++++++|+++|+++++..++
T Consensus 177 ---------------------------~~~~~~~~~~~~~~~~~~i~~G~~D~~~~--~~~~~~~~L~~~g~~~~~~~~~ 227 (255)
T d1jjfa_ 177 ---------------------------RLFPDGGKAAREKLKLLFIACGTNDSLIG--FGQRVHEYCVANNINHVYWLIQ 227 (255)
T ss_dssp ---------------------------HHCTTTTHHHHHHCSEEEEEEETTCTTHH--HHHHHHHHHHHTTCCCEEEEET
T ss_pred ---------------------------cccccHHHHhhccCCcceEEeCCCCCCch--HHHHHHHHHHHCCCCEEEEEEC
Confidence 00001111222344789999999999985 5678999999999999999999
Q ss_pred CCCccC
Q 004141 744 NDVHGI 749 (771)
Q Consensus 744 ~~~H~~ 749 (771)
+++|.+
T Consensus 228 ~ggH~~ 233 (255)
T d1jjfa_ 228 GGGHDF 233 (255)
T ss_dssp TCCSSH
T ss_pred CCCcCH
Confidence 999965
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.69 E-value=3.2e-16 Score=164.93 Aligned_cols=252 Identities=12% Similarity=0.124 Sum_probs=157.0
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCC----CCCCCC------cchHHHHHHHHCCcEEEEECCCCCCCCChhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP----HSVSLS------SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~----~~~~~~------~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~ 584 (771)
-.||.+|.+.+|+|+ ..++.|+||+.|+-. ...... ......+.|+++||+|+.+|+||.++++..+
T Consensus 35 mrDG~~L~~~v~~P~---~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~~ 111 (385)
T d2b9va2 35 MRDGVKLYTVIVIPK---NARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDY 111 (385)
T ss_dssp CTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred CCCCCEEEEEEEEcC---CCCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCcccCCCCce
Confidence 457899999999998 467899999987521 000000 1123457899999999999999988877665
Q ss_pred hhcC-----CCCccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcC
Q 004141 585 LQSL-----PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 659 (771)
Q Consensus 585 ~~~~-----~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~ 659 (771)
.... ....+..+.+|..++|+|+.+++..+.+||+++|+|+||++++.+|...|+.+++++..++..+.......
T Consensus 112 ~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~d~~~~~~~ 191 (385)
T d2b9va2 112 VMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGDDW 191 (385)
T ss_dssp CTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTTBSSS
T ss_pred eeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEecccccccccccc
Confidence 4322 22344567899999999999987678899999999999999999999989999999988877664321100
Q ss_pred C--CCC-----cchhhhhccC-CCCccCCCCCC-h------------------------h-------hHHHHhhcCcccc
Q 004141 660 T--DIP-----DWCYVESYGS-KGKDSFTESPS-V------------------------E-------DLTRFHSKSPISH 699 (771)
Q Consensus 660 ~--~~~-----~~~~~~~~~~-~~~~~~~~~~~-~------------------------~-------~~~~~~~~sp~~~ 699 (771)
. ... .|........ ........... . . ....+...++...
T Consensus 192 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~w~~~s~~~~ 271 (385)
T d2b9va2 192 FHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPAYDAFWQGQALDKI 271 (385)
T ss_dssp EETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCSSSHHHHTTCHHHH
T ss_pred cCCchhccccHHHHHhhhhhcccCccccccchHHHHHHHHhccccccchhcccchhhhhhhhccCcccchhhhhcChhHH
Confidence 0 000 0000000000 00000000000 0 0 0012223344333
Q ss_pred c--CCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCC--CCEEEEEeCCCCccCCC------------CC-ChHHHHHHH
Q 004141 700 I--SKVKTPTIFLLGAQDLRVPVSNGLQYARALREKG--VETKVIVFPNDVHGIER------------PQ-SDFESFLNI 762 (771)
Q Consensus 700 ~--~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g--~~~~~~~~~~~~H~~~~------------~~-~~~~~~~~i 762 (771)
+ .++.+|+|++.|..|... ...+.+.++.++... .+.++++-|. +|+... .+ ........+
T Consensus 272 ~~~~~i~vP~l~~~g~~dd~~-~~g~~~~~~~l~~~~~~~~~~LiiGPw-~H~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 349 (385)
T d2b9va2 272 LAQRKPTVPMLWEQGLWDQED-MWGAIHAWQALKDADVKAPNTLVMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVF 349 (385)
T ss_dssp HHHHCCCSCEEEEEETTCSSC-SSHHHHHHHHHHHTTCSSCEEEEEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTH
T ss_pred HhhccccCceEEEEecccCCc-ccchHHHHHHHHhhccCCCcEEEEeCC-cCCCcccccccccccccCcccchhhHHHHH
Confidence 2 356789999999887654 345566777777653 4678887765 564221 11 122344567
Q ss_pred HHHHHHhhC
Q 004141 763 GLWFKKYCK 771 (771)
Q Consensus 763 ~~fl~~~L~ 771 (771)
++||++|||
T Consensus 350 l~WFD~~LK 358 (385)
T d2b9va2 350 RPFFDEYLK 358 (385)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHcC
Confidence 899999997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=1.2e-15 Score=165.92 Aligned_cols=304 Identities=13% Similarity=0.063 Sum_probs=176.1
Q ss_pred EEEEEEeecCCCCcccee-ecCCccccccceEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCcceEEEecCCcc
Q 004141 73 FMLSTVISKENENSVTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTV 145 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt-~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~ 145 (771)
.++++++.+. +..++. ...|......+..++|||||++|||.++... ....+++.+ .+++..+++..+...
T Consensus 37 ~~~~~~~~t~--~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~ 114 (470)
T d2bgra1 37 NILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT 114 (470)
T ss_dssp CEEEEETTTC--CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred cEEEEECCCC--CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccc
Confidence 4677666333 333332 2233333345789999999999999876321 123455555 455444433333333
Q ss_pred cccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEc
Q 004141 146 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 225 (771)
Q Consensus 146 ~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 225 (771)
..++|||||++|||+. ..+||++++
T Consensus 115 ----------~~~~~SPDG~~ia~~~---------------------------------------------~~~l~~~~~ 139 (470)
T d2bgra1 115 ----------QWVTWSPVGHKLAYVW---------------------------------------------NNDIYVKIE 139 (470)
T ss_dssp ----------EEEEECSSTTCEEEEE---------------------------------------------TTEEEEESS
T ss_pred ----------cccccccCcceeeEee---------------------------------------------cccceEEEC
Confidence 5899999999999973 357899998
Q ss_pred cCCceeeccCCCC-----------------CCccceEEEecCCCCCccEEEEEeecCccee-----------------ee
Q 004141 226 NSGEVQAVKGIPK-----------------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-----------------LG 271 (771)
Q Consensus 226 ~~~~~~~l~~~~~-----------------~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~-----------------~g 271 (771)
.+++..+++.... ......+.|||||+. |+|.......-+ ..
T Consensus 140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~----ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc----cceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 8888777631000 012345789999999 999864332100 00
Q ss_pred eee----eccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC------------CCCccccceeecCCCCEEEEEe
Q 004141 272 IKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT------------ESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 272 ~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt------------~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
..+ ..+....++++++ .++....+. ........+.|+++++.+++..
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 278 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL 278 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEG-----------------GGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred eccccccccCCcceEEEEEC-----------------CCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe
Confidence 011 1112235666776 333322111 1223356789999998777666
Q ss_pred cCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCE-EEEEeeeCCeeE
Q 004141 336 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT-MLLSSIWGSSQV 414 (771)
Q Consensus 336 ~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~-l~~~~~~~~~~~ 414 (771)
++. + ......++.+|..++....+......... .... +.......+.|+++++. +++.+..++..+
T Consensus 279 ~r~----~-~~~~~~~~~~d~~tg~~~~~~~~~~~~~~------~~~~--i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ 345 (470)
T d2bgra1 279 RRI----Q-NYSVMDICDYDESSGRWNCLVARQHIEMS------TTGW--VGRFRPSEPHFTLDGNSFYKIISNEEGYRH 345 (470)
T ss_dssp ESS----T-TEEEEEEEEEETTTTEEEECGGGCEEEEC------SSSC--SSSSSCCCCEECTTSSEEEEEEECTTSCEE
T ss_pred ecc----C-CceEEEEEEecCCCCcEEEEEEEeeeeee------ccce--eecccCCCceeeecCCCcEEEEeccCcCce
Confidence 554 1 12234566677666655443322111000 0000 00011234566666654 556667788899
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCC-CCC--eEEEEEeccc
Q 004141 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV-DVP--QVKYGYFVDK 468 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~-~p~--~l~~~~~~~~ 468 (771)
||.++.++++.+.++.+...+. ..++.+++.++|++.... .|. .||.+++..+
T Consensus 346 ly~~~~~g~~~~~lt~g~~~v~-~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~ 401 (470)
T d2bgra1 346 ICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDY 401 (470)
T ss_dssp EEEEETTCSCCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETTCT
T ss_pred eEEEeccCCceeeeccCCeeEE-EEEEECCCEEEEEEecCCCCcceEEEEEEECCCC
Confidence 9999999999999997765443 357888999998876443 343 4888776543
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.68 E-value=6.4e-17 Score=161.54 Aligned_cols=203 Identities=14% Similarity=0.099 Sum_probs=135.6
Q ss_pred cccCCC-ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCC-
Q 004141 513 LTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG- 590 (771)
Q Consensus 513 ~~~~~g-~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~- 590 (771)
+.+.+| .++.+++++|.++++.+++|+|+++||++....... ....+..+..++.|+++++++...++...+.....
T Consensus 18 ~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~~-~~~~~~~~~~~~~vV~v~~~~~~~~~~~~r~~d~~~ 96 (265)
T d2gzsa1 18 FDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDD-ELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTP 96 (265)
T ss_dssp EECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCCH-HHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTCC
T ss_pred EEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHHH-HHHHHHHhcCCCeEEEecCCCCCcCccccccccccc
Confidence 344454 479999999999988899999999999653321111 12233446789999999999877665432211000
Q ss_pred ----------------Cccc-cchh--hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 591 ----------------KVGS-QDVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 591 ----------------~~~~-~~~~--D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
..+. .... ...+.+.++.++..+|+++++|+|+|+||++++.++.+ ++.|.++++.+|..
T Consensus 97 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~~a~s~~~ 175 (265)
T d2gzsa1 97 AAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPSL 175 (265)
T ss_dssp GGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGGG
T ss_pred ccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEEEEECCcc
Confidence 0000 0111 11223455555666889999999999999999987775 56788888888764
Q ss_pred chhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCC--------CCccCcHHH
Q 004141 652 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--------DLRVPVSNG 723 (771)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~--------D~~vp~~~~ 723 (771)
.+ .....+...++.........|+++.+|+. |..+++.+.
T Consensus 176 ~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~ 223 (265)
T d2gzsa1 176 GR--------------------------------GYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKI 223 (265)
T ss_dssp ST--------------------------------THHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHHH
T ss_pred cc--------------------------------cchhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHHH
Confidence 21 11122222233344455567888888876 667888999
Q ss_pred HHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 724 LQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 724 ~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
++++++|+++|+++++.+|||++|+.
T Consensus 224 ~~l~~~L~~~g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 224 HTTLTILKDKGVNAVFWDFPNLGHGP 249 (265)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCHHH
T ss_pred HHHHHHHHHCCCCEEEEEcCCCCcch
Confidence 99999999999999999999999963
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.67 E-value=4.3e-17 Score=163.76 Aligned_cols=214 Identities=17% Similarity=0.262 Sum_probs=125.4
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|.+.||.|+++|+|| +|.+... .....++++...+..+++. ++.+
T Consensus 23 g~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~-----~~~~~~~~~~~di~~~i~~--l~~~ 90 (279)
T d1hkha_ 23 GQPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKV-----NTGYDYDTFAADLHTVLET--LDLR 90 (279)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechh---hCCcccc-----ccccchhhhhhhhhhhhhh--cCcC
Confidence 4779999997765 4467888888889999999999999 4544211 1122355555555545444 2456
Q ss_pred eEEEEEcChhH-HHHHHHHhhCCCceeEEEecCCccchhhhhcCC--CCCcch------------------hhhhccCCC
Q 004141 617 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT--DIPDWC------------------YVESYGSKG 675 (771)
Q Consensus 617 ri~l~G~S~GG-~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~--~~~~~~------------------~~~~~~~~~ 675 (771)
++.|+|||||| .++..++..+|++++++++.++........... ...... ....+.. .
T Consensus 91 ~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (279)
T d1hkha_ 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPFLVQRDDNPEGVPQEVFDGIEAAAKGDRFAWFTDFYKNFYN-L 169 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHT-H
T ss_pred ccccccccccccchhhhhccccccccceeEEeeccCCccccchhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhhhcc-c
Confidence 89999999996 556666777899999999887643211100000 000000 0000000 0
Q ss_pred CccCCCCCChhhH----HHHhhc-----------------CcccccCCCCCcEEEEeeCCCCccCcHH-HHHHHHHHHhC
Q 004141 676 KDSFTESPSVEDL----TRFHSK-----------------SPISHISKVKTPTIFLLGAQDLRVPVSN-GLQYARALREK 733 (771)
Q Consensus 676 ~~~~~~~~~~~~~----~~~~~~-----------------sp~~~~~~i~~P~lii~G~~D~~vp~~~-~~~~~~~l~~~ 733 (771)
............. ...... .....+..+++|+|+++|++|..+|.+. .+.+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~p-- 247 (279)
T d1hkha_ 170 DENLGSRISEQAVTGSWNVAIGSAPVAAYAVVPAWIEDFRSDVEAVRAAGKPTLILHGTKDNILPIDATARRFHQAVP-- 247 (279)
T ss_dssp HHHBTTTBCHHHHHHHHHHHHTSCTTHHHHTHHHHTCBCHHHHHHHHHHCCCEEEEEETTCSSSCTTTTHHHHHHHCT--
T ss_pred chhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhcccccchhhhcccCCceEEEEcCCCCccCHHHHHHHHHHhCC--
Confidence 0000000000000 000000 0112345568999999999999998754 344444333
Q ss_pred CCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 734 GVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 734 g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
++++++++++||.+... ...++.+.|.+||++
T Consensus 248 --~~~~~~i~~~gH~~~~e-~p~~v~~~i~~fl~k 279 (279)
T d1hkha_ 248 --EADYVEVEGAPHGLLWT-HADEVNAALKTFLAK 279 (279)
T ss_dssp --TSEEEEETTCCTTHHHH-THHHHHHHHHHHHHC
T ss_pred --CCEEEEECCCCCchHHh-CHHHHHHHHHHHHCc
Confidence 36889999999976543 455788899999874
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.67 E-value=1.1e-15 Score=147.40 Aligned_cols=191 Identities=17% Similarity=0.181 Sum_probs=123.5
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCC-----CCC-ChhhhhcCC-CCccccchhhHH---H
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGS-----LGF-GEEALQSLP-GKVGSQDVNDVL---T 602 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~-----~~~-g~~~~~~~~-~~~~~~~~~D~~---~ 602 (771)
...++||++||.+.+ ...+...+..|... ++.+++++-+.. +++ +..|..... ......+.+++. .
T Consensus 12 ~~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 12 PADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 356899999996654 34566677777554 456666553210 001 111211100 011111222332 2
Q ss_pred HHHHHHH---cCCCCCCeEEEEEcChhHHHHHHHHhh-CCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCcc
Q 004141 603 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 678 (771)
Q Consensus 603 ~i~~l~~---~~~~d~~ri~l~G~S~GG~~a~~~a~~-~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (771)
.+..+++ +..+|++|++++|+|+||.+++.++.. .+..++++++.++..... ..
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~-----------------~~----- 147 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF-----------------GD----- 147 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC-----------------CT-----
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccc-----------------cc-----
Confidence 3333322 345899999999999999999988654 466789999887743110 00
Q ss_pred CCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHH
Q 004141 679 FTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFES 758 (771)
Q Consensus 679 ~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~ 758 (771)
.... .....++|+|++||++|.+||++.++++++.|++.|.++++..|+ ++|.+. .+.
T Consensus 148 --~~~~--------------~~~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~-~gH~i~-----~~~ 205 (218)
T d1auoa_ 148 --ELEL--------------SASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVTVTWQEYP-MGHEVL-----PQE 205 (218)
T ss_dssp --TCCC--------------CHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEES-CSSSCC-----HHH
T ss_pred --cccc--------------chhccCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCCEEEEEEC-CCCccC-----HHH
Confidence 0000 001125799999999999999999999999999999999999997 689775 466
Q ss_pred HHHHHHHHHHhhC
Q 004141 759 FLNIGLWFKKYCK 771 (771)
Q Consensus 759 ~~~i~~fl~~~L~ 771 (771)
+..+.+||.+.|+
T Consensus 206 ~~~i~~wl~~~lg 218 (218)
T d1auoa_ 206 IHDIGAWLAARLG 218 (218)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 8899999999885
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.66 E-value=5.2e-17 Score=160.08 Aligned_cols=213 Identities=12% Similarity=0.032 Sum_probs=133.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCc----EEEEECCCCCCCCChhhhhcCCCCc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY----SLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~----~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
.|.+++.++|.|++.+ .+++|+||++||+++.... .....+..+.++|+ .++.++... +........ .
T Consensus 25 lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~-~~~~~l~~l~~~~~~~~~i~v~~~~~~----~~~~~~~~~--~ 96 (246)
T d3c8da2 25 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTHRQQLPPAVYVLIDAID----TTHRAHELP--C 96 (246)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHHTTSSCSCEEEEECCCS----HHHHHHHSS--S
T ss_pred CCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccC-cHHHHHHHHHHhCCCCceEEeeccccc----ccccccccC--c
Confidence 4778899999999874 4679999999997643322 34445666666663 444554322 111111111 1
Q ss_pred cccchhhHH-HHHHHHHHc--CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhh
Q 004141 593 GSQDVNDVL-TAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 669 (771)
Q Consensus 593 ~~~~~~D~~-~~i~~l~~~--~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~ 669 (771)
...-...+. +.+..+.+. ..+|+++++++|+||||+++++++.++|++|+++++.+|..+......
T Consensus 97 ~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~~----------- 165 (246)
T d3c8da2 97 NADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGG----------- 165 (246)
T ss_dssp CHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTTS-----------
T ss_pred cHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCCc-----------
Confidence 111111112 122222232 336889999999999999999999999999999999999764321100
Q ss_pred hccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Q 004141 670 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGI 749 (771)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~ 749 (771)
.....+...++.....+...|+++.+|+.|..+ ..++++|+++|+++|+++++.+++| ||.+
T Consensus 166 ----------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~g~~~~~~~~~G-gH~~ 227 (246)
T d3c8da2 166 ----------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHPIKESIFWRQVDG-GHDA 227 (246)
T ss_dssp ----------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGGGTTSEEEEEESC-CSCH
T ss_pred ----------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHHCCCCEEEEEeCC-CCCh
Confidence 001122233345556677889999999999877 4788999999999999999999997 7965
Q ss_pred CCCCChHHHHHHHHHHHHHh
Q 004141 750 ERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 750 ~~~~~~~~~~~~i~~fl~~~ 769 (771)
. ...+.+.+.+.||-+.
T Consensus 228 ~---~W~~~l~~~l~~l~~~ 244 (246)
T d3c8da2 228 L---CWRGGLMQGLIDLWQP 244 (246)
T ss_dssp H---HHHHHHHHHHHHHHGG
T ss_pred H---HHHHHHHHHHHHHHHh
Confidence 3 1234444555555443
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.6e-17 Score=162.27 Aligned_cols=209 Identities=18% Similarity=0.186 Sum_probs=126.9
Q ss_pred CcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 537 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 537 ~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.|+||++||.+.+ ...|...+..|+ .||.|+++|+|| +|.+.. .....+.|+. +.+... ..+
T Consensus 11 ~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~------~~~~~~~d~~---~~~~~~---~~~ 72 (256)
T d1m33a_ 11 NVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSRG------FGALSLADMA---EAVLQQ---APD 72 (256)
T ss_dssp SSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCCS------CCCCCHHHHH---HHHHTT---SCS
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCC---CCCccc------cccccccccc---cccccc---ccc
Confidence 4678899997655 346777788885 689999999999 554421 2222344443 333333 246
Q ss_pred eEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcch--------------hhhh-ccCCCCc----
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--------------YVES-YGSKGKD---- 677 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~--------------~~~~-~~~~~~~---- 677 (771)
++.++||||||.+++.++.++|+.++++++.++................. .... .......
T Consensus 73 ~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T d1m33a_ 73 KAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTETA 152 (256)
T ss_dssp SEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTH
T ss_pred ceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccch
Confidence 89999999999999999999999999988876532211000000000000 0000 0000000
Q ss_pred ---------c--CCCCCChh----hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEe
Q 004141 678 ---------S--FTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVF 742 (771)
Q Consensus 678 ---------~--~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 742 (771)
. ........ ....+...+....+.++++|+|+++|++|..+|++.++.+.+.+. +.++.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~~----~~~~~~i 228 (256)
T d1m33a_ 153 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIF 228 (256)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCT----TCEEEEE
T ss_pred hhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHCC----CCEEEEE
Confidence 0 00000000 011112233345567899999999999999999888777655443 4789999
Q ss_pred CCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 743 PNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 743 ~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
+++||.+. .+...++.+.+.+|+++
T Consensus 229 ~~~gH~~~-~e~p~~~~~~l~~fl~~ 253 (256)
T d1m33a_ 229 AKAAHAPF-ISHPAEFCHLLVALKQR 253 (256)
T ss_dssp TTCCSCHH-HHSHHHHHHHHHHHHTT
T ss_pred CCCCCchH-HHCHHHHHHHHHHHHHH
Confidence 99999754 33456788888888864
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=2.5e-16 Score=159.19 Aligned_cols=242 Identities=15% Similarity=0.122 Sum_probs=151.8
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc-
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV- 592 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~- 592 (771)
.|.++...++.| .+++|+|+++||++.......|.. ..+.+.+.|+.|++++..+...++...........
T Consensus 19 ~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T d1sfra_ 19 MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (288)
T ss_dssp TTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCccccCcccccccc
Confidence 466777666654 468999999999665433333332 45677889999999998775544332211110000
Q ss_pred cccchh--hHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhh
Q 004141 593 GSQDVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 670 (771)
Q Consensus 593 ~~~~~~--D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 670 (771)
.....+ -+.+.+.+|.++..+|++|++|+|+||||++|+.++.++|++|+++++.+|.++.......... .. ....
T Consensus 94 ~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~~-~~-~~~~ 171 (288)
T d1sfra_ 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLI-GL-AMGD 171 (288)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHHH-HH-HHHH
T ss_pred cchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccchhh-hh-hhhh
Confidence 011122 2346677888887799999999999999999999999999999999999998764321100000 00 0000
Q ss_pred ccCCCCccCCCCCChhhHHHHhhcCcccccCC---CCCcEEEEeeCCCCccCc--------------HHHHHHHHHHHhC
Q 004141 671 YGSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV--------------SNGLQYARALREK 733 (771)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~P~lii~G~~D~~vp~--------------~~~~~~~~~l~~~ 733 (771)
........+... .+...+...+|...+.+ -..++++.+|..|..++. ++++++.++|++.
T Consensus 172 ~~~~~~~~~~g~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~~~ 248 (288)
T d1sfra_ 172 AGGYKASDMWGP---KEDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYNAG 248 (288)
T ss_dssp TTSCCHHHHHCS---TTSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHhhhcCC---cchhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHHHC
Confidence 000000000000 11123445566554433 246899999999987763 5678899999999
Q ss_pred CCCEEEEEeCCC-CccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 734 GVETKVIVFPND-VHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 734 g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
|+++.+..+++. +|.+. .....+.+.+.||.+.|+
T Consensus 249 g~~~~~~~~~~~G~H~w~---~w~~~l~~~l~~l~~alg 284 (288)
T d1sfra_ 249 GGHNGVFDFPDSGTHSWE---YWGAQLNAMKPDLQRALG 284 (288)
T ss_dssp TCCSEEEECCSCCCSSHH---HHHHHHHHTHHHHHHHHT
T ss_pred CCCeEEEEECCCCccChh---HHHHHHHHHHHHHHHhcC
Confidence 999999988865 59653 123445567778877763
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.65 E-value=4.4e-16 Score=158.39 Aligned_cols=231 Identities=15% Similarity=0.196 Sum_probs=138.7
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccc
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 594 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~ 594 (771)
.+||.++++..+-++ ..|.||++||++.+. ..|......| ++||.|+++|+|| +|.+.... ....
T Consensus 18 ~~dG~~i~y~~~G~~------~g~pvvllHG~~~~~--~~w~~~~~~l-~~~~~vi~~D~rG---~G~S~~~~---~~~~ 82 (313)
T d1wm1a_ 18 TGDGHRIYWELSGNP------NGKPAVFIHGGPGGG--ISPHHRQLFD-PERYKVLLFDQRG---CGRSRPHA---SLDN 82 (313)
T ss_dssp CSSSCEEEEEEEECT------TSEEEEEECCTTTCC--CCGGGGGGSC-TTTEEEEEECCTT---STTCBSTT---CCTT
T ss_pred eCCCcEEEEEEecCC------CCCeEEEECCCCCcc--cchHHHHHHh-hcCCEEEEEeCCC---cccccccc---cccc
Confidence 457899987776543 236789999987763 3565555444 5699999999999 55443211 1122
Q ss_pred cchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhh-----------------
Q 004141 595 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----------------- 657 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~----------------- 657 (771)
....++.+.+..+.+. .+..++.++|||+||.++..++..+|++++.+++.++........
T Consensus 83 ~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (313)
T d1wm1a_ 83 NTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWE 160 (313)
T ss_dssp CSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCCHHHHHHHHTSSGGGTSHHHHH
T ss_pred cchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeecccccccccccccccccccchhhhhhhh
Confidence 2344555555555555 346789999999999999999999999999998877654321000
Q ss_pred ---cCCCCCc---ch---hhhhcc----------------CCCCccCCCCCChh-----hHH--------HHhhc----C
Q 004141 658 ---GTTDIPD---WC---YVESYG----------------SKGKDSFTESPSVE-----DLT--------RFHSK----S 695 (771)
Q Consensus 658 ---~~~~~~~---~~---~~~~~~----------------~~~~~~~~~~~~~~-----~~~--------~~~~~----s 695 (771)
....... +. ...... .............. ... ..... .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (313)
T d1wm1a_ 161 RVLSILSDDERKDVIAAYRQRLTSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDDFALAFARIENHYFTHLGFLE 240 (313)
T ss_dssp HHHTTSCTTGGGCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTTSSSSCCGGGGGGGCHHHHHHHHHHHHHHHHTGGGCS
T ss_pred hhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhcccchhhhhhhhhhHHhhhhhhhhhhhhhhcccc
Confidence 0000000 00 000000 00000000000000 000 00000 0
Q ss_pred -----cccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 696 -----PISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 696 -----p~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
.......+++|+|+++|++|.++|++.++.+.+.+.+ +++++++++||.+.. .+...++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~Pvlii~G~~D~~~p~~~~~~l~~~~p~----a~~~~i~~aGH~~~e----P~~~~~lv~a~~~f~ 312 (313)
T d1wm1a_ 241 SDDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPE----AELHIVEGAGHSYDE----PGILHQLMIATDRFA 312 (313)
T ss_dssp STTHHHHTGGGGTTSCEEEEEETTCSSSCHHHHHHHHHHCTT----SEEEEETTCCSSTTS----HHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhhhCCCCEEEEEECCCCccCHHHHHHHHHHCCC----CEEEEECCCCCCcCC----chHHHHHHHHHHHhc
Confidence 0122345789999999999999999999988887754 689999999996532 356677888887764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.64 E-value=1.6e-15 Score=158.00 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=131.2
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
.+||+||+.++.++++ .....+..++|||||+. |++++...+ ..|+++|+
T Consensus 24 g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~----l~~~~~~~g-------------~~v~v~d~---------- 73 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKV----AFIHGTREG-------------DFLGIYDY---------- 73 (360)
T ss_dssp TEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEE----EEEEEETTE-------------EEEEEEET----------
T ss_pred CeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCE----EEEEEcCCC-------------CEEEEEEC----------
Confidence 5899999999998887 34456889999999999 999884332 26889998
Q ss_pred hhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccc
Q 004141 298 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 377 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 377 (771)
.+++.+++..+...+...+|||||++|++...+. .++++++.++....+....
T Consensus 74 -------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--------- 126 (360)
T d1k32a3 74 -------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----------EIMTVDLETGKPTVIERSR--------- 126 (360)
T ss_dssp -------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEECS---------
T ss_pred -------CCCcEEEeeCCCceEEeeeecccccccceecccc-----------ccccccccccceeeeeecc---------
Confidence 8889999999888899999999999999887653 5888998776643221111
Q ss_pred cCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEE
Q 004141 378 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 378 ~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~ 450 (771)
......++|+|||++|++..... ....++.+++.+++...++..........+++||+.|++.
T Consensus 127 ----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 127 ----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp ----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred ----------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 01345789999999998876532 2446888899999998888776666667899999999887
Q ss_pred EeC
Q 004141 451 SSS 453 (771)
Q Consensus 451 ~~~ 453 (771)
...
T Consensus 197 s~~ 199 (360)
T d1k32a3 197 SYR 199 (360)
T ss_dssp ESC
T ss_pred eCC
Confidence 643
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.58 E-value=2e-15 Score=149.12 Aligned_cols=213 Identities=15% Similarity=0.152 Sum_probs=120.0
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..+.|+||++||.+.+ ...|...+..|++.||.|+++|+|| +|.+..... . .......+...+......
T Consensus 13 ~~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G---~G~s~~~~~---~---~~~~~~~~~~~~~~~~~~ 81 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPERHC---D---NFAEAVEMIEQTVQAHVT 81 (264)
T ss_dssp BTTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCC
T ss_pred CCCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccccc---c---ccchhhhhhhhccccccc
Confidence 3456899999997765 4578889999998999999999999 554322111 1 111222222222223234
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh------hh----------c-CCCCCcchhhhhccCCCC
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL------MV----------G-TTDIPDWCYVESYGSKGK 676 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~------~~----------~-~~~~~~~~~~~~~~~~~~ 676 (771)
..+++.++||||||.+++.++.++|+.+..++...+...... .. . ............... .
T Consensus 82 ~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (264)
T d1r3da_ 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGHFGLQENEEKAARWQHDQQWAQRFSQQPIEHVLSDWYQ--Q 159 (264)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCCCCCCSHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHTT--S
T ss_pred ccCceeeeeecchHHHHHHHHHhCchhccccccccccCCCccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--h
Confidence 567899999999999999999999988777665432211000 00 0 000000000000000 0
Q ss_pred ccCCCCCC--------------hhhHHHH-h------hcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC
Q 004141 677 DSFTESPS--------------VEDLTRF-H------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV 735 (771)
Q Consensus 677 ~~~~~~~~--------------~~~~~~~-~------~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~ 735 (771)
..+..... ....... . .......+..+++|+++++|++|..+ ..+.+. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~l~i~G~~D~~~-----~~~~~~-~---- 229 (264)
T d1r3da_ 160 AVFSSLNHEQRQTLIAQRSANLGSSVAHMLLATSLAKQPYLLPALQALKLPIHYVCGEQDSKF-----QQLAES-S---- 229 (264)
T ss_dssp GGGTTCCHHHHHHHHHHHTTSCHHHHHHHHHHTCGGGCCCCHHHHHTCSSCEEEEEETTCHHH-----HHHHHH-H----
T ss_pred hhhcccchHHHHHHHHHHhhhhhhhhHHhhhhccccccccchhhhhccCcceEEEEeCCcHHH-----HHHHhc-C----
Confidence 00000000 0000000 0 00112335678899999999999654 222221 1
Q ss_pred CEEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhh
Q 004141 736 ETKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYC 770 (771)
Q Consensus 736 ~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L 770 (771)
++++++++++||.+... ...++.+.|.+||+.-+
T Consensus 230 ~~~~~~i~~~gH~~~~e-~P~~~~~~i~~fl~~l~ 263 (264)
T d1r3da_ 230 GLSYSQVAQAGHNVHHE-QPQAFAKIVQAMIHSII 263 (264)
T ss_dssp CSEEEEETTCCSCHHHH-CHHHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCchHHH-CHHHHHHHHHHHHHhcc
Confidence 36889999999986643 45688889999998753
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.55 E-value=7.7e-15 Score=147.92 Aligned_cols=123 Identities=13% Similarity=0.107 Sum_probs=81.5
Q ss_pred cccCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCc
Q 004141 513 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 592 (771)
Q Consensus 513 ~~~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~ 592 (771)
+.+-+|.++++... + ..|+||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+........
T Consensus 12 fi~~~g~~i~y~~~------G--~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~~~~~~- 76 (298)
T d1mj5a_ 12 FIEIKGRRMAYIDE------G--TGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIG---MGDSDKLDPSGP- 76 (298)
T ss_dssp EEEETTEEEEEEEE------S--CSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTT---STTSCCCSSCST-
T ss_pred EEEECCEEEEEEEE------c--CCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---CCCCCCCccccc-
Confidence 33446788875543 1 24789999998765 446777777775 569999999999 444432111111
Q ss_pred cccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 593 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
......+..+.+..++... ...+++.++||||||.+++.++.++|+++.++++.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 77 ERYAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp TSSCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred cccccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 1122334444433333322 345789999999999999999999999999988776543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.53 E-value=1.7e-12 Score=132.07 Aligned_cols=285 Identities=13% Similarity=0.158 Sum_probs=163.8
Q ss_pred hcCccccceE-EEecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeE
Q 004141 35 TNISSIDKAW-TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL 113 (771)
Q Consensus 35 ~~~~~~~~~~-~~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l 113 (771)
+.+|+...+. +.-+.+|+|+.|+|... ..+.++++.... ....++.. ...+...+|||||++|
T Consensus 10 ~~~p~~~r~~~~~~a~~~~g~~l~~~~~----------~~v~i~~~~~~~-~~~~~~~H-----~~~v~~~~~sp~g~~l 73 (311)
T d1nr0a1 10 PSLPRTARGTAVVLGNTPAGDKIQYCNG----------TSVYTVPVGSLT-DTEIYTEH-----SHQTTVAKTSPSGYYC 73 (311)
T ss_dssp CCCCCCCTTCCCCCEECTTSSEEEEEET----------TEEEEEETTCSS-CCEEECCC-----SSCEEEEEECTTSSEE
T ss_pred cCCCCCCCCCeEEEEEcCCCCEEEEEeC----------CEEEEEECCCCc-eeEEEcCC-----CCCEEEEEEeCCCCeE
Confidence 3455544432 12234689999999632 245566663321 22233322 2568899999999999
Q ss_pred EEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCC
Q 004141 114 LVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSS 191 (771)
Q Consensus 114 a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~ 191 (771)
|.....+ ...+|+ .+.......+.. ..+. +.++.|+|||+.|+..+...
T Consensus 74 atg~~dg-----~i~iwd~~~~~~~~~~~~~~-~~~~------v~~v~~s~d~~~l~~~~~~~----------------- 124 (311)
T d1nr0a1 74 ASGDVHG-----NVRIWDTTQTTHILKTTIPV-FSGP------VKDISWDSESKRIAAVGEGR----------------- 124 (311)
T ss_dssp EEEETTS-----EEEEEESSSTTCCEEEEEEC-SSSC------EEEEEECTTSCEEEEEECCS-----------------
T ss_pred eccccCc-----eEeeeeeecccccccccccc-ccCc------cccccccccccccccccccc-----------------
Confidence 8765543 455662 222221121111 1111 26899999999998875432
Q ss_pred CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeee
Q 004141 192 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 271 (771)
Q Consensus 192 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g 271 (771)
...+.+|++++++..... ......+..+.|+|||+. ++.++.
T Consensus 125 -------------------------~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~----~l~sgs-------- 166 (311)
T d1nr0a1 125 -------------------------ERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPF----RIISGS-------- 166 (311)
T ss_dssp -------------------------SCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSC----EEEEEE--------
T ss_pred -------------------------cccccccccccccccccc-ccccccccccccccccee----eecccc--------
Confidence 234677888877654431 233445778899999997 665542
Q ss_pred eeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccc
Q 004141 272 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 350 (771)
Q Consensus 272 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~ 350 (771)
.+..|.++|+ .+++ ...+..+...+....|+|||+.|+..+.+. .
T Consensus 167 ------~d~~i~i~d~-----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-----------~ 212 (311)
T d1nr0a1 167 ------DDNTVAIFEG-----------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-----------T 212 (311)
T ss_dssp ------TTSCEEEEET-----------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------C
T ss_pred ------cccccccccc-----------------cccccccccccccccccccccCccccccccccccc-----------c
Confidence 2236888887 4444 344455566788999999999988776553 4
Q ss_pred ceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 351 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 351 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+.+||+.++..... +... .....| +...+..++|+|||+.|+ +...++. |..+|+.++++.+...
T Consensus 213 v~~~d~~~~~~~~~----------~~~~-~~~~~~-h~~~V~~~~~s~~~~~l~-tgs~Dg~--v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 213 IVLYNGVDGTKTGV----------FEDD-SLKNVA-HSGSVFGLTWSPDGTKIA-SASADKT--IKIWNVATLKVEKTIP 277 (311)
T ss_dssp EEEEETTTCCEEEE----------CBCT-TSSSCS-SSSCEEEEEECTTSSEEE-EEETTSE--EEEEETTTTEEEEEEE
T ss_pred cccccccccccccc----------cccc-cccccc-ccccccccccCCCCCEEE-EEeCCCe--EEEEECCCCcEEEEEE
Confidence 78888876543211 0000 000110 112345678999999665 4444554 5555888888665332
Q ss_pred -CCC-CceeeEEeecCCEEEEEE
Q 004141 431 -AES-NFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 431 -~~~-~~~~~~~s~dg~~l~~~~ 451 (771)
... ......+.++++.|+...
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~s~s 300 (311)
T d1nr0a1 278 VGTRIEDQQLGIIWTKQALVSIS 300 (311)
T ss_dssp CCSSGGGCEEEEEECSSCEEEEE
T ss_pred CCCCccceEEEEEecCCEEEEEE
Confidence 222 122234555666555443
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.52 E-value=1.6e-16 Score=162.99 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=128.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----cchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
+.+..+.|. ..++.| ||++||++.+.... .+...++.++++||.|+++|+||.+.++.....
T Consensus 46 ~~v~~~~p~---~~~~~P-vvllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~--------- 112 (318)
T d1qlwa_ 46 MYVRYQIPQ---RAKRYP-ITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISA--------- 112 (318)
T ss_dssp EEEEEEEET---TCCSSC-EEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHH---------
T ss_pred EEEEEECCC---CCCCCc-EEEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCcccc---------
Confidence 344456676 344566 67799988764321 233468899999999999999996655432211
Q ss_pred chhhHHHHHHHH---HHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCce-eEEEecCCccchhhhhcCCCCC-c--chhh
Q 004141 596 DVNDVLTAIDHV---IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCNLALMVGTTDIP-D--WCYV 668 (771)
Q Consensus 596 ~~~D~~~~i~~l---~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~-~~~v~~~p~~~~~~~~~~~~~~-~--~~~~ 668 (771)
.+.....+++ ++.......++.++|||+||.++..++....... ...++.++.............. . ....
T Consensus 113 --~~~~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (318)
T d1qlwa_ 113 --INAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLA 190 (318)
T ss_dssp --HHHHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHH
Confidence 1111111111 1111123456778899999988777665443221 1111111111100000000000 0 0000
Q ss_pred hhccCCCCccCCCCCChh--hH-------------HHHhhcCcccccCCCCCcEEEEeeCCCCccCc-----HHHHHHHH
Q 004141 669 ESYGSKGKDSFTESPSVE--DL-------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPV-----SNGLQYAR 728 (771)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~-----~~~~~~~~ 728 (771)
.................. .. +......+......+++|+|+++|++|.++|. ..+..+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~Lii~G~~D~~~p~~~~~~~~~~~~~~ 270 (318)
T d1qlwa_ 191 IKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFID 270 (318)
T ss_dssp HHHTSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHH
T ss_pred hhhccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhhccCCEEEEecCcCcccChhhhHHHHHHHHHH
Confidence 000000000000000000 00 00112244556677889999999999999985 45667888
Q ss_pred HHHhCCCCEEEEEeC-----CCCccCCCCCChHHHHHHHHHHHHHh
Q 004141 729 ALREKGVETKVIVFP-----NDVHGIERPQSDFESFLNIGLWFKKY 769 (771)
Q Consensus 729 ~l~~~g~~~~~~~~~-----~~~H~~~~~~~~~~~~~~i~~fl~~~ 769 (771)
.++++|.+++++.+| |++|.+..+.+..++.+.|.+||+++
T Consensus 271 ~l~~~g~~~~~~~lp~~gi~G~gH~~~~e~~~~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 271 ALNAAGGKGQLMSLPALGVHGNSHMMMQDRNNLQVADLILDWIGRN 316 (318)
T ss_dssp HHHHTTCCEEEEEGGGGTCCCCCTTGGGSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcEEEEecccccCCCcCccccCcCHHHHHHHHHHHHHhc
Confidence 899999999999977 56799877777779999999999986
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.49 E-value=5.7e-12 Score=126.83 Aligned_cols=243 Identities=15% Similarity=0.107 Sum_probs=154.7
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
.....+|||||++|+.....+ ..+..++ ..++..+.+...... ..+.|++||+.++.....
T Consensus 33 ~p~~va~spdG~~l~v~~~~~---~~i~v~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CceEEEEeCCCCEEEEEECCC---CEEEEEECCCCceeeeeeccccc----------cccccccccccccccccc-----
Confidence 356789999999996544322 2354444 444444444443333 488999999988775432
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...+.+++..+++.... ...........|+|||+. +
T Consensus 95 --------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~----~ 130 (301)
T d1l0qa2 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (301)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------cceeeecccccceeeee--ccccccceEEEeecCCCe----e
Confidence 25788899988876555 344445677899999997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++... ....++.++. .+.................++||++.++......
T Consensus 131 ~~~~~--------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred eeeec--------------cccceeeeec-----------------cccceeeecccCCCceEEEeeccccceeeecccc
Confidence 76652 2235777776 5555444434444567789999999887765442
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..+.+++......... ... . .......|++||+.+++.........|+.+
T Consensus 180 ----------~~~~~~~~~~~~~~~~----------~~~---~-------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 180 ----------MSISVIDTVTNSVIDT----------VKV---E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp ----------TEEEEEETTTTEEEEE----------EEC---S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------cccccccccceeeeec----------ccc---c-------CCcceeeccccccccccccccceeeeeeee
Confidence 2345555443322110 000 0 012356789999998877665556678999
Q ss_pred ECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 419 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
|+.++++..............|+|||++|+++.+.. ..|.+.++.++
T Consensus 230 D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~---~~i~v~D~~t~ 276 (301)
T d1l0qa2 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC---NTVSVIDTATN 276 (301)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred ecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC---CeEEEEECCCC
Confidence 999988765433333456678999999987765432 36788776554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.3e-12 Score=131.56 Aligned_cols=264 Identities=11% Similarity=0.051 Sum_probs=161.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
|+||++|+-. . ++.+.+|++........ +.........+.+...+|||||++|+.....+ .+.+
T Consensus 60 s~~g~~latg---------~-dg~V~iWd~~~~~~~~~-~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg-----~i~i 123 (337)
T d1gxra_ 60 SNPTRHVYTG---------G-KGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLSI 123 (337)
T ss_dssp CSSSSEEEEE---------C-BSEEEEEETTSTTCCSC-SEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEEE
T ss_pred CCCCCEEEEE---------E-CCEEEEEEccCCcccce-eEEeeecCCCCcEEEEEEcCCCCEEEEeeccc-----cccc
Confidence 5677766542 2 24577777754432211 11111111224578899999999998765543 4556
Q ss_pred ec-C-CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 130 WS-Q-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 130 ~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
|+ . ...+....+.... . ......|+||+..|+..+.
T Consensus 124 wd~~~~~~~~~~~~~~~~-~------~v~~~~~~~~~~~l~s~~~----------------------------------- 161 (337)
T d1gxra_ 124 WDLAAPTPRIKAELTSSA-P------ACYALAISPDSKVCFSCCS----------------------------------- 161 (337)
T ss_dssp EECCCC--EEEEEEECSS-S------CEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred cccccccccccccccccc-c------ccccccccccccccccccc-----------------------------------
Confidence 62 2 2222222221111 0 1247889999998876532
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...+.++++.+++..... ......+..++|+++++. ++..+ .+..|.++|+
T Consensus 162 ---------d~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~----~~~~~---------------~d~~v~i~d~ 212 (337)
T d1gxra_ 162 ---------DGNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWDL 212 (337)
T ss_dssp ---------TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET
T ss_pred ---------cccccccccccccccccc-cccccccccccccccccc----ccccc---------------cccccccccc
Confidence 257889999888766552 233446778899999997 77665 2346888887
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++..........+.+..|+|+|+.|+....+ ..+.++|+.+++......
T Consensus 213 -----------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~- 263 (337)
T d1gxra_ 213 -----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES-----------SNVEVLHVNKPDKYQLHL- 263 (337)
T ss_dssp -----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETT-----------SCEEEEETTSSCEEEECC-
T ss_pred -----------------ccceeecccccccceEEEEEcccccccceeccc-----------cccccccccccccccccc-
Confidence 555544433455667889999999998866654 348888887655321110
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEE
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNI 447 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l 447 (771)
+...+..++|+|||+.|+ +...++. |..+|..+++..........+....|+++++.|
T Consensus 264 -------------------~~~~i~~v~~s~~g~~l~-s~s~Dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l 321 (337)
T d1gxra_ 264 -------------------HESCVLSLKFAYCGKWFV-STGKDNL--LNAWRTPYGASIFQSKESSSVLSCDISVDDKYI 321 (337)
T ss_dssp -------------------CSSCEEEEEECTTSSEEE-EEETTSE--EEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred -------------------cccccceEEECCCCCEEE-EEeCCCe--EEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence 111345678999999664 4444544 555588888876655555556667889999877
Q ss_pred EEEE
Q 004141 448 IAVS 451 (771)
Q Consensus 448 ~~~~ 451 (771)
+...
T Consensus 322 ~t~s 325 (337)
T d1gxra_ 322 VTGS 325 (337)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=4.5e-13 Score=133.97 Aligned_cols=208 Identities=14% Similarity=0.097 Sum_probs=121.7
Q ss_pred CCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCC--ccccchhh--HHHHHHHHH
Q 004141 536 CDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--VGSQDVND--VLTAIDHVI 608 (771)
Q Consensus 536 ~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~--~~~~~~~D--~~~~i~~l~ 608 (771)
+.|+|+++||.+.......|.. ..+.+.+.|++||+||-.... +...+....... .+....++ +.+.+.+|.
T Consensus 28 ~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~ 106 (280)
T d1dqza_ 28 GPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSS-FYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQ 106 (280)
T ss_dssp SSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTC-TTSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHH
T ss_pred CCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCCC-cCccccCCcccccCCcchhHHHHHHHHHHHHHH
Confidence 5699999999654322334432 456788999999999953322 222221111111 11112222 235566666
Q ss_pred HcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhH
Q 004141 609 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 688 (771)
Q Consensus 609 ~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (771)
++..+|++|++|+|+||||+.|+.++.++|++|+++++.+|.++........ .... .....+........+.+ ..
T Consensus 107 ~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~---~~ 181 (280)
T d1dqza_ 107 ANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPT-LIGL-AMNDSGGYNANSMWGPS---SD 181 (280)
T ss_dssp HHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHH-HHHH-HHHHTTSCCHHHHHCST---TS
T ss_pred HhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcchh-hhhh-hHhhccCCCHhhccCCc---ch
Confidence 7766899999999999999999999999999999999999987532110000 0000 00000100000000001 11
Q ss_pred HHHhhcCcccccCCC---CCcEEEEeeCCCCccC--------------cHHHHHHHHHHHhCCCCEEEE-EeCCCCccC
Q 004141 689 TRFHSKSPISHISKV---KTPTIFLLGAQDLRVP--------------VSNGLQYARALREKGVETKVI-VFPNDVHGI 749 (771)
Q Consensus 689 ~~~~~~sp~~~~~~i---~~P~lii~G~~D~~vp--------------~~~~~~~~~~l~~~g~~~~~~-~~~~~~H~~ 749 (771)
..+...+|...++++ ..++++.+|..|...+ ....+.+.+.|++++...... ..++++|..
T Consensus 182 ~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~~g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 182 PAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYAADGGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECCSCCCSSH
T ss_pred hhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccccccccccchhhHHHHHHHHHHHHHHHHcCCCeEEEEEcCCCccCc
Confidence 234455666555443 3678999998886543 245677888898888764444 445678964
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=5.6e-13 Score=132.19 Aligned_cols=215 Identities=15% Similarity=0.153 Sum_probs=128.7
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcc
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 593 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~ 593 (771)
.|..+...++.|. .|+|+++||.........|.. ..+.++..++.||+||--.. .+...+.. .+
T Consensus 14 ~~r~~~~~v~~~~-------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~~-~~y~~~~~-----~~ 80 (267)
T d1r88a_ 14 MGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAY-SMYTNWEQ-----DG 80 (267)
T ss_dssp TTEEEEEEEECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTT-STTSBCSS-----CT
T ss_pred CCceeeEEEECCC-------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCCC-cCCccccc-----cc
Confidence 3566777776543 389999999543322223433 45677889999999984221 12222211 11
Q ss_pred ccchhhHH--HHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCCCCcchhhhhc
Q 004141 594 SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 671 (771)
Q Consensus 594 ~~~~~D~~--~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~ 671 (771)
....++.+ +.+.++.++..++++|++|.|+||||+.|+.++.++|++|+++++.+|.++.......... .......
T Consensus 81 ~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~~~--~~~~~~~ 158 (267)
T d1r88a_ 81 SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAI--AAGMQQF 158 (267)
T ss_dssp TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHH--HHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchhhh--hhHHhhh
Confidence 12233333 3556777777789999999999999999999999999999999999998754321100000 0000000
Q ss_pred cCCCCccCCCCCChhhHHHHhhcCcccccCCC---CCcEEEEeeCCCCccCc-----------HHHHHHHHHHHhCC-CC
Q 004141 672 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVPV-----------SNGLQYARALREKG-VE 736 (771)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~lii~G~~D~~vp~-----------~~~~~~~~~l~~~g-~~ 736 (771)
+........+. .....+.+.+|...++++ ..++++.+|..|..+.. .....+.++|++.+ .+
T Consensus 159 ~~~~~~~~~g~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~ 235 (267)
T d1r88a_ 159 GGVDTNGMWGA---PQLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRSVGGHN 235 (267)
T ss_dssp HCCCTHHHHCC---GGGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cCCcHhhccCC---cchHhHHhcCHHHHHHhccccCceEEEEecCCCcccccchhhhhHHHhhhhHHHHHHHHHHcCCCc
Confidence 00000000000 111233445565544332 46789999999876543 24556777887764 67
Q ss_pred EEEEEeCCCCccC
Q 004141 737 TKVIVFPNDVHGI 749 (771)
Q Consensus 737 ~~~~~~~~~~H~~ 749 (771)
+.+...++++|.+
T Consensus 236 ~~~~~~~~G~H~W 248 (267)
T d1r88a_ 236 GHFDFPASGDNGW 248 (267)
T ss_dssp EEEECCSSCCSSH
T ss_pred EEEEEcCCCeECh
Confidence 8888888889964
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.2e-11 Score=126.43 Aligned_cols=292 Identities=10% Similarity=0.028 Sum_probs=146.0
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEecC
Q 004141 54 TQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 132 (771)
Q Consensus 54 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~ 132 (771)
++++|..+..+ ..|.+++++..+. ...+....+ +.+...+|||||++|++. ...++.-.+|.+...
T Consensus 3 ~~~v~v~~~~~-------~~I~v~~~~~~~~l~~~~~~~~~-----~~v~~la~spDG~~L~v~-~~~d~~i~~~~i~~~ 69 (333)
T d1ri6a_ 3 KQTVYIASPES-------QQIHVWNLNHEGALTLTQVVDVP-----GQVQPMVVSPDKRYLYVG-VRPEFRVLAYRIAPD 69 (333)
T ss_dssp EEEEEEEEGGG-------TEEEEEEECTTSCEEEEEEEECS-----SCCCCEEECTTSSEEEEE-ETTTTEEEEEEECTT
T ss_pred ceEEEEECCCC-------CcEEEEEEcCCCCeEEEEEEcCC-----CCEeEEEEeCCCCEEEEE-ECCCCeEEEEEEeCC
Confidence 46677766433 4666677754432 222222333 557789999999999554 433344455666533
Q ss_pred C-cceEEEec--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCC--CCCCccCCCCCCcccccCC
Q 004141 133 S-QLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 133 ~-~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d 207 (771)
+ ..+..... .... ..++|||||++|+........- ..+....... .........+.....+++|
T Consensus 70 ~~~~~~~~~~~~~~~p----------~~l~~spDg~~l~v~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d 138 (333)
T d1ri6a_ 70 DGALTFAAESALPGSL----------THISTDHQGQFVFVGSYNAGNV-SVTRLEDGLPVGVVDVVEGLDGCHSANISPD 138 (333)
T ss_dssp TCCEEEEEEEECSSCC----------SEEEECTTSSEEEEEETTTTEE-EEEEEETTEEEEEEEEECCCTTBCCCEECTT
T ss_pred CCcEEEeeecccCCCc----------eEEEEcCCCCEEeecccCCCce-eeeccccccceecccccCCCccceEEEeeec
Confidence 3 32222222 2222 4789999999988765432110 0111000000 0000112222334455666
Q ss_pred cCcccCCc-cCceEEEEEccCCceeec-----cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 208 WGETYAGK-RQPSLFVININSGEVQAV-----KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 208 ~g~~~~~~-~~~~l~v~d~~~~~~~~l-----~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
....+... ....|.+++......... ........+..++|+++++. ++... .... .
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~----~~~~~-~~~~-------------~ 200 (333)
T d1ri6a_ 139 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVN-ELNS-------------S 200 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEE-TTTT-------------E
T ss_pred ceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee----EEeec-cccC-------------c
Confidence 43322222 335677777655432211 01222334567899999985 55443 2211 2
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCc------ceecC---CCCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLP------VVNLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~------~~~lt---~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
....+... .... ...+. ........+.+||||++++...... ..+.
T Consensus 201 ~~v~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~----------~~~~ 255 (333)
T d1ri6a_ 201 VDVWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLIT 255 (333)
T ss_dssp EEEEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEE
T ss_pred eEEEeecc---------------cccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC----------CeEE
Confidence 22222200 1111 11111 1122345678999999876555432 2344
Q ss_pred eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 353 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
++++........ +..... ....+..++|||||++|+++....+...+|.+|.++|+++++
T Consensus 256 ~~~~~~~~~~~~------~~~~~~----------~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 256 VFSVSEDGSVLS------KEGFQP----------TETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp EEEECTTSCCEE------EEEEEE----------CSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCEEE------EEEEeC----------CCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 444433322111 000000 001245778999999987766666778899999999988765
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.41 E-value=1.3e-13 Score=137.83 Aligned_cols=192 Identities=12% Similarity=-0.006 Sum_probs=115.2
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-----cchHHHHHHH----HCCcEEEEECCCCCCCCChhhhhcCCC
Q 004141 520 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLS----SVGYSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 520 ~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-----~~~~~~~~la----~~G~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+..+++|.|+++++.+++|+|+++||+++..... ........+. ...+.|+.+++++....+..+...
T Consensus 38 ~r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--- 114 (273)
T d1wb4a1 38 TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQE--- 114 (273)
T ss_dssp EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCSTTCCTTTHHHH---
T ss_pred eEEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCCCCccccchhc---
Confidence 5689999999998889999999999987543211 1112222222 346899999988755443332111
Q ss_pred CccccchhhHHHHHH---------HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhhhhcCCC
Q 004141 591 KVGSQDVNDVLTAID---------HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 661 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~---------~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~~~~ 661 (771)
...++...++ .+..+..+|+++++++|+|+||++++.++.++|++|+++++.+|........
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~~~~---- 185 (273)
T d1wb4a1 115 -----FRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYGNSP---- 185 (273)
T ss_dssp -----HHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBSSSH----
T ss_pred -----ccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccCCCc----
Confidence 1122221111 1112223688999999999999999999999999999999999875321100
Q ss_pred CCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHH----------
Q 004141 662 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALR---------- 731 (771)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~---------- 731 (771)
. ... ........ .........++++..|+.|..+ .....+.+.+.
T Consensus 186 ---~---~~~-------------~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 240 (273)
T d1wb4a1 186 ---Q---DKA-------------NSIAEAIN----RSGLSKREYFVFAATGSEDIAY--ANMNPQIEAMKALPHFDYTSD 240 (273)
T ss_dssp ---H---HHH-------------HHHHHHHH----HHTCCTTSCEEEEEEETTCTTH--HHHHHHHHHHHTSTTCCBBSC
T ss_pred ---c---ccc-------------ccchhhhh----hhhhcccceEEEEecCCCCccc--ccchhHHHHHHHHHHHHHHHH
Confidence 0 000 00000000 0112223355777788877654 33344444433
Q ss_pred hCCCCEEEEEeCCCCcc
Q 004141 732 EKGVETKVIVFPNDVHG 748 (771)
Q Consensus 732 ~~g~~~~~~~~~~~~H~ 748 (771)
..+..+.+..+++++|.
T Consensus 241 ~~~~~~~~~~~~~ggH~ 257 (273)
T d1wb4a1 241 FSKGNFYFLVAPGATHW 257 (273)
T ss_dssp TTTCCEEEEEETTCCSS
T ss_pred hcCCCEEEEEECCCccC
Confidence 33567889999999994
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.3e-13 Score=132.57 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCCCCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCC
Q 004141 539 LIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 616 (771)
Q Consensus 539 ~vv~~HGg~~~~~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 616 (771)
.||++||.+.+ ...|...+..|.+. ||.|+++|+|| +|.+... ....++++...+..+++.. + +
T Consensus 4 PvvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G---~g~S~~~------~~~~~~~~~~~l~~~l~~l--~-~ 69 (268)
T d1pjaa_ 4 PVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA--P-Q 69 (268)
T ss_dssp CEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC--T-T
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCC---CCCCCCc------cccCHHHHHHHHHHHHhcc--C-C
Confidence 36789997665 45788889999764 89999999999 6666421 1233556666666665553 3 7
Q ss_pred eEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCC
Q 004141 617 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 617 ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p 649 (771)
++.|+||||||.+++.+|.++|+ +++.+|+.++
T Consensus 70 ~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 70 GVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp CEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred eEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 89999999999999999999998 5999888776
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=99.41 E-value=2.5e-13 Score=143.27 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=90.9
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC------cEEEEECCCCCCCCChhhhhcCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG------YSLLIVNYRGSLGFGEEALQSLPG 590 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G------~~Vv~~d~rG~~~~g~~~~~~~~~ 590 (771)
+|.+||.+-+... .+..+.||++||.|.+ ...|...+..|++.| |.||+||+|| ||.+.. +.
T Consensus 90 ~G~~iHf~h~~~~----~~~~~pLlLlHG~P~s--~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~---P~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSG---PP 157 (394)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCC---CC
T ss_pred CCEEEEEEEEecc----CCCCCEEEEecccccc--HHHHHHHHHhhccccCCcccceeeecccccc---cCCCCC---CC
Confidence 6899987666543 3456789999998887 558999999999988 9999999999 666532 21
Q ss_pred CccccchhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 591 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
........++...+..+... +..++..++|||+||.++..++..+|+.+.++++....
T Consensus 158 ~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 158 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 22233466666666666665 34567899999999999999999999988888776543
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=6.5e-13 Score=132.49 Aligned_cols=233 Identities=10% Similarity=0.046 Sum_probs=135.8
Q ss_pred CCceEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCCCcchH---HHHHHHHCCcEEEEECCCCCCC---------
Q 004141 517 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLG--------- 579 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~-----~~~~~p~vv~~HGg~~~~~~~~~~~---~~~~la~~G~~Vv~~d~rG~~~--------- 579 (771)
-|.++...+|.|+++. .++++|+|+++||.+.+ ...|.. ..+.+.+.+++|++++......
T Consensus 24 l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~~~~~~~~~~ 101 (299)
T d1pv1a_ 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp SSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEECCSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--HHHHHHhhhHHHHHHHcCCceecCCCcccccccCCccccc
Confidence 3677888999998762 35679999999996543 223322 3445667899999987432100
Q ss_pred ----CChhhhhcCCC-Cc-cccchhhHH--HHHHHHHHcCCC-------CCCeEEEEEcChhHHHHHHHHhh--CCCcee
Q 004141 580 ----FGEEALQSLPG-KV-GSQDVNDVL--TAIDHVIDMGLA-------NPSKVTVVGGSHGGFLTTHLIGQ--APDKFV 642 (771)
Q Consensus 580 ----~g~~~~~~~~~-~~-~~~~~~D~~--~~i~~l~~~~~~-------d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~ 642 (771)
....+...... .+ +....++.+ +.+.++.+...+ +.++.+|.|+||||+.|+.++.+ +|++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al~~~~p~~f~ 181 (299)
T d1pv1a_ 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHHHTGGGTCCS
T ss_pred ccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHHHhcCCCceE
Confidence 00111000000 00 011122221 233344443222 33679999999999999999976 489999
Q ss_pred EEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCccccc---CCC-CCcEEEEeeCCCCcc
Q 004141 643 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHI---SKV-KTPTIFLLGAQDLRV 718 (771)
Q Consensus 643 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~---~~i-~~P~lii~G~~D~~v 718 (771)
++++.+|..+....... .......++. ....+...+|...+ .+. ..++++.+|++|...
T Consensus 182 ~~~s~s~~~~~~~~~~~----~~~~~~~~g~-------------~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 182 SCSAFAPIVNPSNVPWG----QKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCSTTSHHH----HHHHHHHSCC-----------------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred EEeeccCcCCcccccch----hhhhhhhccc-------------chhhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 99999998653211000 0000011111 01122233333322 222 356888899999987
Q ss_pred CcH-HHHHHHHHHHhCCCC--EEEEEeCCCCccCCCCCChHHHHHHHHHHHHHhhC
Q 004141 719 PVS-NGLQYARALREKGVE--TKVIVFPNDVHGIERPQSDFESFLNIGLWFKKYCK 771 (771)
Q Consensus 719 p~~-~~~~~~~~l~~~g~~--~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~~L~ 771 (771)
+.. ..+.|.+.++.++.+ +++...||.+|.... ....+.+.+.|+.++|+
T Consensus 245 ~~~~~~~~f~~~~~~~g~~~~~~~~~~~G~~Hsw~y---W~~~i~~~l~f~a~~lg 297 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKATSWQDYVEIKKVHGFDHSYYF---VSTFVPEHAEFHARNLG 297 (299)
T ss_dssp TTTCCTHHHHHHHTTSTTTTSEEEECCTTCCSSHHH---HHHHHHHHHHHHHHHTT
T ss_pred hhhhcHHHHHHHHHhcCCCcceEEEecCCCCcCHHH---HHHHHHHHHHHHHHhcC
Confidence 643 346788999888865 678778888897421 23556678899999885
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=3.8e-11 Score=124.06 Aligned_cols=308 Identities=9% Similarity=-0.031 Sum_probs=172.3
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC-----
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 121 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 121 (771)
...+|||++++ ..+.. .+.....+|++|.. .++....... +....++|||||++|++......
T Consensus 7 ~a~spdg~~~~-v~~~~---~~~~~~~v~v~D~~--tg~~~~~~~~------g~~~~~a~SpDg~~l~v~~~~~~~~~~g 74 (355)
T d2bbkh_ 7 EAPAPDARRVY-VNDPA---HFAAVTQQFVIDGE--AGRVIGMIDG------GFLPNPVVADDGSFIAHASTVFSRIARG 74 (355)
T ss_dssp CCCCCCTTEEE-EEECG---GGCSSEEEEEEETT--TTEEEEEEEE------CSSCEEEECTTSSCEEEEEEEEEETTEE
T ss_pred EeeCCCCCEEE-EEecc---cCCCcCeEEEEECC--CCcEEEEEEC------CCCCceEEcCCCCEEEEEeCCCcccccc
Confidence 34578999995 44332 22345688998763 3233221111 33457899999999987654211
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.....+.+| ..++..+.+.........+ ......+.|||||+++++....
T Consensus 75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~-------------------------- 126 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQFS-------------------------- 126 (355)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCB--SCCGGGEEECTTSSEEEEEECS--------------------------
T ss_pred CCCCEEEEEECCCCCEEEEEecCCcceeec--CCCCceEEEecCCCeeEEecCC--------------------------
Confidence 112234455 3455555444332211111 0112468899999998775322
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC------CccceEEEecCCCCCccEEEEEeecCcceeeeee
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 273 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~------~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~ 273 (771)
....+++++..+++.......+.. .....+.+++||+. +++....
T Consensus 127 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~----~~v~~~~--------- 177 (355)
T d2bbkh_ 127 ----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL----AKVAFGT--------- 177 (355)
T ss_dssp ----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE----EEEECCS---------
T ss_pred ----------------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE----EEEEecC---------
Confidence 225678888888876543112211 12335678889886 6554421
Q ss_pred eeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCcccccccee
Q 004141 274 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 353 (771)
Q Consensus 274 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~ 353 (771)
...+...+. ..... ........+.+++++..+++.+.. ..+++
T Consensus 178 -----~~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v 220 (355)
T d2bbkh_ 178 -----EGTPEITHT-----------------EVFHP----EDEFLINHPAYSQKAGRLVWPTYT-----------GKIHQ 220 (355)
T ss_dssp -----SSCCEEEEC-----------------CCCSC----TTSCBCSCCEEETTTTEEEEEBTT-----------SEEEE
T ss_pred -----CCeEEEEec-----------------ccccc----eecceeeeccccCCCCeEEEecCC-----------CeEEE
Confidence 123444443 21111 112234557888899999888754 25888
Q ss_pred eecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcEE
Q 004141 354 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELL 426 (771)
Q Consensus 354 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~-------~~~~l~~~d~~tg~~~ 426 (771)
+++.++....+............. . ........+.+++|++.+++..... ....|+.+|..+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~----~---~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 221 IDLSSGDAKFLPAVEALTEAERAD----G---WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp EECTTSSCEECCCEESSCHHHHHT----T---EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred EecCCCcEEEEeccCCcccceEee----e---eeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence 888876653332211110000000 0 0011234578999999888776543 2457999999988866
Q ss_pred EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 427 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 427 ~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
.............|+|||+.++++....+ ..|++.+..+++
T Consensus 294 ~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 294 AKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCC
T ss_pred EEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCC
Confidence 43332223455789999997766665433 568888876553
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.34 E-value=7.7e-11 Score=119.56 Aligned_cols=236 Identities=13% Similarity=0.071 Sum_probs=143.7
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEec-CCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++|+|+.|||.... .+++.+ ......++... ... +.+++|||||++||..+.
T Consensus 20 ~~~~a~~~~g~~l~~~~~~-----~v~i~~~~~~~~~~~~~~H~~~----------v~~~~~sp~g~~latg~~------ 78 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGT-----SVYTVPVGSLTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDV------ 78 (311)
T ss_dssp CCCCEECTTSSEEEEEETT-----EEEEEETTCSSCCEEECCCSSC----------EEEEEECTTSSEEEEEET------
T ss_pred eEEEEEcCCCCEEEEEeCC-----EEEEEECCCCceeEEEcCCCCC----------EEEEEEeCCCCeEecccc------
Confidence 4567899999999997532 254444 44444444432 222 269999999999987643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee---eccCCCCCCccceEEEecCCCCCc
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLH 255 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~---~l~~~~~~~~~~~~~wspDg~~~~ 255 (771)
+..|.+||+.+++.. .+ ......+..+.|+|||+.
T Consensus 79 --------------------------------------dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~d~~~-- 116 (311)
T d1nr0a1 79 --------------------------------------HGNVRIWDTTQTTHILKTTI--PVFSGPVKDISWDSESKR-- 116 (311)
T ss_dssp --------------------------------------TSEEEEEESSSTTCCEEEEE--ECSSSCEEEEEECTTSCE--
T ss_pred --------------------------------------CceEeeeeeecccccccccc--ccccCccccccccccccc--
Confidence 257899999887532 23 123446788999999997
Q ss_pred cEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCEEEEE
Q 004141 256 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 256 ~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+.. ....+.++++ +++ ....+..+...+....|+|||+.++..
T Consensus 117 --l~~~~~~-------------~~~~~~v~~~-----------------~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s 164 (311)
T d1nr0a1 117 --IAAVGEG-------------RERFGHVFLF-----------------DTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 164 (311)
T ss_dssp --EEEEECC-------------SSCSEEEEET-----------------TTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred --ccccccc-------------cccccccccc-----------------ccccccccccccccccccccccccceeeecc
Confidence 7776521 1123455565 333 345666666778889999999975443
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeE
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~ 414 (771)
...+ ..|.++|+.+++....... +...+..+.|+||++.|+ +...++...
T Consensus 165 gs~d----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~v~~~p~~~~l~-~~~~d~~v~ 214 (311)
T d1nr0a1 165 GSDD----------NTVAIFEGPPFKFKSTFGE-------------------HTKFVHSVRYNPDGSLFA-STGGDGTIV 214 (311)
T ss_dssp EETT----------SCEEEEETTTBEEEEEECC-------------------CSSCEEEEEECTTSSEEE-EEETTSCEE
T ss_pred cccc----------ccccccccccccccccccc-------------------ccccccccccCccccccc-ccccccccc
Confidence 3332 3588888876543211100 011244678999998664 444455444
Q ss_pred EEEEECCCCcEEEecCCC--------CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 415 IISVNVSSGELLRITPAE--------SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.+|+.+++........ ..+....|+++++.|+....+ ..|++.++.+
T Consensus 215 --~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D----g~v~iwd~~t 269 (311)
T d1nr0a1 215 --LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD----KTIKIWNVAT 269 (311)
T ss_dssp --EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred --ccccccccccccccccccccccccccccccccCCCCCEEEEEeCC----CeEEEEECCC
Confidence 4577776655433211 234456788999877754322 2466666543
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.33 E-value=5e-12 Score=116.80 Aligned_cols=168 Identities=16% Similarity=0.039 Sum_probs=113.9
Q ss_pred EEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCCCCCeEE
Q 004141 540 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 619 (771)
Q Consensus 540 vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~ 619 (771)
||++||.+.+ ...|...++.|+++||.|+.+++++...... ......+++.+.++.+.++ ...+++.
T Consensus 5 Vv~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~i~~~~~~--~~~~~v~ 71 (179)
T d1ispa_ 5 VVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWDKTG---------TNYNNGPVLSRFVQKVLDE--TGAKKVD 71 (179)
T ss_dssp EEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSCTTC---------CHHHHHHHHHHHHHHHHHH--HCCSCEE
T ss_pred EEEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCcccccc---------ccchhhhhHHHHHHHHHHh--cCCceEE
Confidence 6789997654 4578889999999999999999887332211 1112355666677776665 2457899
Q ss_pred EEEcChhHHHHHHHHhhC--CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhhHHHHhhcCcc
Q 004141 620 VVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 697 (771)
Q Consensus 620 l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 697 (771)
|+||||||.++..++.++ +++++.+|++++........ ..+.
T Consensus 72 lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~-----------------------~l~~------------- 115 (179)
T d1ispa_ 72 IVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK-----------------------ALPG------------- 115 (179)
T ss_dssp EEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB-----------------------CCCC-------------
T ss_pred EEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh-----------------------hcCC-------------
Confidence 999999999999998776 57899999887653211100 0000
Q ss_pred cccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHHH
Q 004141 698 SHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFKK 768 (771)
Q Consensus 698 ~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~~ 768 (771)
.......|++.++|..|.+|++..+. +. ..+-+.+++.+|... ..+ .++++.+.+||+.
T Consensus 116 -~~~~~~~~~~~i~~~~D~~v~~~~~~-----l~----~~~~~~~~~~~H~~l-~~~-~~v~~~i~~~L~~ 174 (179)
T d1ispa_ 116 -TDPNQKILYTSIYSSADMIVMNYLSR-----LD----GARNVQIHGVGHIGL-LYS-SQVNSLIKEGLNG 174 (179)
T ss_dssp -SCTTCCCEEEEEEETTCSSSCHHHHC-----CB----TSEEEEESSCCTGGG-GGC-HHHHHHHHHHHTT
T ss_pred -cccccCceEEEEEecCCcccCchhhc-----CC----CceEEEECCCCchhh-ccC-HHHHHHHHHHHhc
Confidence 01123578999999999999876531 21 246678889999643 222 3678888888763
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=99.32 E-value=1.3e-11 Score=124.92 Aligned_cols=230 Identities=14% Similarity=0.144 Sum_probs=135.7
Q ss_pred CCCCcEEEEEcCCCCCCCC------Ccch-HH---HHHHHHCCcEEEEECCCCCCCCChhhhhcCCC--------Ccccc
Q 004141 534 CSCDPLIVVLHGGPHSVSL------SSYS-KS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQ 595 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~------~~~~-~~---~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~--------~~~~~ 595 (771)
..+-++||++|+-.++... ..|. .+ -..+-...|.||++|+.|++ +|.+....... .+...
T Consensus 36 ~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~-~gSs~p~s~~p~tg~~~g~~FP~i 114 (357)
T d2b61a1 36 DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGC-KGTTGPSSINPQTGKPYGSQFPNI 114 (357)
T ss_dssp TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCS-SSSSCTTSBCTTTSSBCGGGCCCC
T ss_pred CCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCc-cccCCcCCCCCCCCCCCCcccccc
Confidence 3456899999984433211 1121 11 12333456999999999854 22222221111 12344
Q ss_pred chhhHHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh--h-------hcCCCCCcc
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--M-------VGTTDIPDW 665 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~--~-------~~~~~~~~~ 665 (771)
.+.|+.++-..|+++- .-+|+ .|+|.||||+.|+..+.++|+++..+|+++....... . .....-++|
T Consensus 115 ti~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~a~~s~~~~~~~~~~~~aI~~Dp~~ 192 (357)
T d2b61a1 115 VVQDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIYFSAEAIGFNHVMRQAVINDPNF 192 (357)
T ss_dssp CHHHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSSCCHHHHHHHHHHHHHHHTSTTC
T ss_pred hhHHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccccccchhHHHHHHHHHHHHHcCCCC
Confidence 6889998888888773 45677 7889999999999999999999999887776431100 0 000001111
Q ss_pred h------------------------------hhhhccCCCC---ccCCCCCChhhHHH------HhhcCc----------
Q 004141 666 C------------------------------YVESYGSKGK---DSFTESPSVEDLTR------FHSKSP---------- 696 (771)
Q Consensus 666 ~------------------------------~~~~~~~~~~---~~~~~~~~~~~~~~------~~~~sp---------- 696 (771)
. +...++.... ..+......+.+.. ....++
T Consensus 193 ~~G~Y~~~~~p~~GL~~Ar~~a~~ty~s~~~~~~~f~r~~~~~~~~~~~~~~vesyL~~~g~kf~~rfDan~yl~l~~a~ 272 (357)
T d2b61a1 193 NGGDYYEGTPPDQGLSIARMLGMLTYRTDLQLAKAFGRATKSDGSFWGDYFQVESYLSYQGKKFLERFDANSYLHLLRAL 272 (357)
T ss_dssp GGGCCTTSCCCHHHHHHHHHHHHHHHSCHHHHHHHTTTCBCTTCCTTSCCBHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcccCCCchhHHHHHHHHHHhhccCHHHHHHHhccccccccccccchhhHHHHHHHHHHHHHhhCCHHHHHHHHHHh
Confidence 0 0111111000 00000000010000 001111
Q ss_pred ------------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCC-CccCCCCCChHHHHHHHH
Q 004141 697 ------------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPND-VHGIERPQSDFESFLNIG 763 (771)
Q Consensus 697 ------------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~-~H~~~~~~~~~~~~~~i~ 763 (771)
...+.+|++|+|+|..+.|..+|+++.+++++.|...++++++++++.. ||.-...+ ..++-..|.
T Consensus 273 ~~~D~~~~~~~l~~aL~~I~a~vLvi~~~sD~lFpp~~~~~~a~~l~~~~~~v~~~~I~S~~GHdafL~e-~~~~~~~I~ 351 (357)
T d2b61a1 273 DMYDPSLGYENVKEALSRIKARYTLVSVTTDQLFKPIDLYKSKQLLEQSGVDLHFYEFPSDYGHDAFLVD-YDQFEKRIR 351 (357)
T ss_dssp HHCCTTTTSSCHHHHHTTCCSEEEEEEETTCSSSCHHHHHHHHHHHHHTTCEEEEEEECCTTGGGHHHHC-HHHHHHHHH
T ss_pred hhcccccccccHHHHHhhcCCCEEEEEeCCccccCHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCcC-HHHHHHHHH
Confidence 1236789999999999999999999999999999999999999999875 77532233 235556677
Q ss_pred HHHH
Q 004141 764 LWFK 767 (771)
Q Consensus 764 ~fl~ 767 (771)
+||+
T Consensus 352 ~fL~ 355 (357)
T d2b61a1 352 DGLA 355 (357)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7765
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.32 E-value=1.1e-10 Score=117.21 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=147.4
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEE
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 127 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 127 (771)
..||||++|+.+... ...|.++++.+. +..+..... ......+|++||+.+++..... ..+.
T Consensus 38 a~spdG~~l~v~~~~--------~~~i~v~d~~t~--~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (301)
T d1l0qa2 38 VISPDGTKVYVANAH--------SNDVSIIDTATN--NVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STLS 99 (301)
T ss_dssp EECTTSSEEEEEEGG--------GTEEEEEETTTT--EEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEEE
T ss_pred EEeCCCCEEEEEECC--------CCEEEEEECCCC--ceeeeeecc-----cccccccccccccccccccccc---ceee
Confidence 357899988654322 246777776322 222111111 2356789999999987765432 2333
Q ss_pred EEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 128 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 128 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
..+ ..++....+...... ....|+|||+.+++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~dg~~~~~~~~~--------------------------------- 136 (301)
T d1l0qa2 100 VIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG--------------------------------- 136 (301)
T ss_dssp EEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT---------------------------------
T ss_pred ecccccceeeeeccccccc----------eEEEeecCCCeeeeeecc---------------------------------
Confidence 333 344444444433333 478999999998876432
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEe
Q 004141 207 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 286 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d 286 (771)
...+.+++..+++.... ......+..+.|+||++. ++.... ....++..+
T Consensus 137 ----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~ 186 (301)
T d1l0qa2 137 ----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVID 186 (301)
T ss_dssp ----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEEE
T ss_pred ----------ccceeeeeccccceeee--cccCCCceEEEeeccccc----eeeecc--------------ccccccccc
Confidence 25688889888876665 344445678899999997 666542 112445555
Q ss_pred cccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCcc
Q 004141 287 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 366 (771)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~ 366 (771)
. ...+...............|++||+.++...... ....|+++|+.+++....
T Consensus 187 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~--------~~~~v~v~D~~t~~~~~~-- 239 (301)
T d1l0qa2 187 T-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITAR-- 239 (301)
T ss_dssp T-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEEE--
T ss_pred c-----------------cceeeeecccccCCcceeeccccccccccccccc--------eeeeeeeeecCCCeEEEE--
Confidence 4 3344333333344567789999999987665442 135699999887654210
Q ss_pred ceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEE
Q 004141 367 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 367 ~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~ 427 (771)
+.. . ..+..++|||||++|+++...++ .|..+|++++++..
T Consensus 240 --------~~~---~-------~~~~~va~spdg~~l~va~~~~~--~i~v~D~~t~~~~~ 280 (301)
T d1l0qa2 240 --------IPV---G-------PDPAGIAVTPDGKKVYVALSFCN--TVSVIDTATNTITA 280 (301)
T ss_dssp --------EEC---C-------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEE
T ss_pred --------EcC---C-------CCEEEEEEeCCCCEEEEEECCCC--eEEEEECCCCeEEE
Confidence 000 0 02346789999998877654444 56677999998653
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=99.30 E-value=7.4e-11 Score=119.65 Aligned_cols=242 Identities=13% Similarity=0.134 Sum_probs=141.0
Q ss_pred ceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCC----------CcchH----HHHHHHHCCcEEEEECCCCCCCCChhh
Q 004141 519 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----------SSYSK----SLAFLSSVGYSLLIVNYRGSLGFGEEA 584 (771)
Q Consensus 519 ~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~----------~~~~~----~~~~la~~G~~Vv~~d~rG~~~~g~~~ 584 (771)
.+|.+..|--. ...+.++||++|+..++... ..|.. .-..+--..|.||++|..|++ +|.+.
T Consensus 27 ~~l~Y~t~G~l---n~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~-~~ss~ 102 (362)
T d2pl5a1 27 VVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGC-KGSSG 102 (362)
T ss_dssp EEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCS-SSSSS
T ss_pred ceEEEEeeecc---CCCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCc-ccccC
Confidence 34544444432 23446999999984433211 11211 112333455999999999854 33332
Q ss_pred hhcCCC--------CccccchhhHHHHHHHHHHcCCCCCCeEE-EEEcChhHHHHHHHHhhCCCceeEEEecCCccchhh
Q 004141 585 LQSLPG--------KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 655 (771)
Q Consensus 585 ~~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~ri~-l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~ 655 (771)
.+.... .+....+.|+.++-+.|+++-.+ +++. |+|.||||+.|+..|.++|+.++.+|.+++......
T Consensus 103 ~~s~~p~~~~~yg~~fP~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~ 180 (362)
T d2pl5a1 103 PLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSA 180 (362)
T ss_dssp TTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCH
T ss_pred ccccccccccccCcCCccchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCH
Confidence 222111 12234578988888888877444 4555 889999999999999999999999998876432110
Q ss_pred h---------hcCCCCCcch-----------------------------hhhhccCCCC-----------cc--------
Q 004141 656 M---------VGTTDIPDWC-----------------------------YVESYGSKGK-----------DS-------- 678 (771)
Q Consensus 656 ~---------~~~~~~~~~~-----------------------------~~~~~~~~~~-----------~~-------- 678 (771)
. .....-+.|. +...++.... ..
T Consensus 181 ~~~~~~~~~~~aI~~Dp~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k 260 (362)
T d2pl5a1 181 MQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGES 260 (362)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHHhcCCccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 0 0000000110 0011111000 00
Q ss_pred CCCCCChhhHH----HHhhcCc------ccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCC-CCc
Q 004141 679 FTESPSVEDLT----RFHSKSP------ISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPN-DVH 747 (771)
Q Consensus 679 ~~~~~~~~~~~----~~~~~sp------~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~~H 747 (771)
+.......... .+...++ ...+.+|++|+|+|..+.|..+|+++.+++++.|..+++++++++++. .||
T Consensus 261 ~~~rfDan~yl~l~~a~~~~Di~~~~~l~~aL~~I~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a~~~v~~~eI~S~~GH 340 (362)
T d2pl5a1 261 FVDRFDANSYIYVTKALDHYSLGKGKELTAALSNATCRFLVVSYSSDWLYPPAQSREIVKSLEAADKRVFYVELQSGEGH 340 (362)
T ss_dssp SSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTCCSEEEEEEETTCCSSCHHHHHHHHHHHHHTTCCEEEEEECCCBSS
T ss_pred HHhcCCHHHHHHHHhhhhcccccccccHHHHHhhCCCCEEEEEeCcccCcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc
Confidence 00000111110 1111111 123789999999999999999999999999999999999999988865 477
Q ss_pred cCCCCCChHHHHHHHHHHHH
Q 004141 748 GIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 748 ~~~~~~~~~~~~~~i~~fl~ 767 (771)
.-...+. .++.+.|.+||+
T Consensus 341 daFL~e~-~~~~~~I~~FL~ 359 (362)
T d2pl5a1 341 DSFLLKN-PKQIEILKGFLE 359 (362)
T ss_dssp GGGGSCC-HHHHHHHHHHHH
T ss_pred chhccCH-HHHHHHHHHHHc
Confidence 5333343 356677778876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.30 E-value=1.3e-09 Score=113.19 Aligned_cols=304 Identities=8% Similarity=-0.026 Sum_probs=162.2
Q ss_pred cCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCC-----
Q 004141 48 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 121 (771)
Q Consensus 48 ~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 121 (771)
..||||++++++.... ......+|++|..+ ++.. ++. . +....++|||||++|++......
T Consensus 27 a~spdg~~~~~~~~~~----~~~~~~v~v~D~~t--g~~~~~~~-~------~~~~~~a~SpDG~~l~va~~~~~~~~~~ 93 (373)
T d2madh_ 27 APGADGRRSYINLPAH----HSAIIQQWVLDAGS--GSILGHVN-G------GFLPNPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred ccCCCCCEEEEEcccc----cCCCceEEEEECCC--CCEEEEEe-C------CCCccEEEcCCCCEEEEEeecCCccccc
Confidence 3578999997764322 23456788877532 2332 221 1 23446899999999988765431
Q ss_pred CCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCC
Q 004141 122 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 199 (771)
Q Consensus 122 ~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (771)
.....+.+| ..++....+..+......+ ......+.|||||+.+++.....
T Consensus 94 ~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~------------------------- 146 (373)
T d2madh_ 94 KRTDYVEVFDPVTFLPIADIELPDAPRFDV--GPYSWMNANTPNNADLLFFQFAA------------------------- 146 (373)
T ss_pred ccceEEEEEECCCCcEEEEEecCCcceeEe--ccCCCcEEEEeCCCcEEEEEEcC-------------------------
Confidence 112234444 3444444443322110000 00113678999999887764322
Q ss_pred CcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCC
Q 004141 200 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 279 (771)
Q Consensus 200 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~ 279 (771)
...+.+++..+++.... .. ....+.++|||+. ++++.. .+
T Consensus 147 -----------------~~~~~~~~~~~~~~~~~--~~---~~~~~~~s~~g~~----~~v~~~--------------~d 186 (373)
T d2madh_ 147 -----------------GPAVGLVVQGGSSDDQL--LS---SPTCYHIHPGAPS----TFYLLC--------------AQ 186 (373)
T ss_pred -----------------CCceEEeeccCCeEEEE--ec---cceeEEEecCCCc----EEEEEc--------------CC
Confidence 24566777777665444 11 2446789999997 665542 22
Q ss_pred ceeEEEecccccchhhhhhhhcCCCCCCcceecCC-------CCccccceeecCCCCEEEEEecCCCCCCCCccccccce
Q 004141 280 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 352 (771)
Q Consensus 280 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~-------~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~ 352 (771)
..+.+++. .+++...... .........+++++..+ +.+.. ..++
T Consensus 187 g~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~v~ 237 (373)
T d2madh_ 187 GGLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYS-----------GKIL 237 (373)
T ss_pred CeEEEEEc-----------------CCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCC-----------ceEE
Confidence 36777776 4443322111 11123345566666544 33322 2356
Q ss_pred eeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeC-------CeeEEEEEECCCCcE
Q 004141 353 RIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGEL 425 (771)
Q Consensus 353 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~-------~~~~l~~~d~~tg~~ 425 (771)
+++..++....+............ ....+ ......++++|++.+++..... ....++.+|..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~ 310 (373)
T d2madh_ 238 QADISAAGATNKAPIDALSGGRKA---DTWRP----GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred EEEcCCCeEEEEEeeccccCcEEe---eeecc----CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcE
Confidence 666555432211100000000000 00000 1223567899999877654322 234688889988886
Q ss_pred EEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 426 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 426 ~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
..............|++||+.++++..+.+ ..|++.|..+++
T Consensus 311 ~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~ 352 (373)
T d2madh_ 311 SSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGD 352 (373)
T ss_pred EEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCC
Confidence 655444444566789999998776654443 358888876654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.3e-10 Score=119.28 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=142.7
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
++||+.|+.. ...+.|.+|++........ .+.. ....+....|+|++..++...... .+..
T Consensus 106 s~dg~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~~~d~----~i~~ 167 (337)
T d1gxra_ 106 LPDGCTLIVG---------GEASTLSIWDLAAPTPRIKAELTS-----SAPACYALAISPDSKVCFSCCSDG----NIAV 167 (337)
T ss_dssp CTTSSEEEEE---------ESSSEEEEEECCCC--EEEEEEEC-----SSSCEEEEEECTTSSEEEEEETTS----CEEE
T ss_pred cCCCCEEEEe---------eccccccccccccccccccccccc-----cccccccccccccccccccccccc----cccc
Confidence 5566665543 2335677777643322211 1111 124467788999999988765433 2333
Q ss_pred Ee-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCC
Q 004141 129 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 207 (771)
Q Consensus 129 ~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 207 (771)
.+ ..++..+...... + ....++|+|+|+.+++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~---~------~v~~l~~s~~~~~~~~~~~----------------------------------- 203 (337)
T d1gxra_ 168 WDLHNQTLVRQFQGHT---D------GASCIDISNDGTKLWTGGL----------------------------------- 203 (337)
T ss_dssp EETTTTEEEEEECCCS---S------CEEEEEECTTSSEEEEEET-----------------------------------
T ss_pred cccccccccccccccc---c------ccccccccccccccccccc-----------------------------------
Confidence 33 3333332222111 1 1258899999999988643
Q ss_pred cCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 208 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 208 ~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
...+.+||+.+++.... ......+..++|+|+++. |+..+ ....|.++|+
T Consensus 204 ---------d~~v~i~d~~~~~~~~~--~~~~~~i~~l~~~~~~~~----l~~~~---------------~d~~i~i~d~ 253 (337)
T d1gxra_ 204 ---------DNTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEVLHV 253 (337)
T ss_dssp ---------TSEEEEEETTTTEEEEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET
T ss_pred ---------cccccccccccceeecc--cccccceEEEEEcccccc----cceec---------------cccccccccc
Confidence 25788999988876554 334456778999999987 76554 2347888888
Q ss_pred ccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccc
Q 004141 288 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 367 (771)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 367 (771)
.+++......+...+....|||||+.|+..+.+ ..|.+||+.+++.......
T Consensus 254 -----------------~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~~ 305 (337)
T d1gxra_ 254 -----------------NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQSKE 305 (337)
T ss_dssp -----------------TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC
T ss_pred -----------------cccccccccccccccceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEEccC
Confidence 666666666677778999999999988866644 3588899887654221100
Q ss_pred eeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 368 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 368 ~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
...+..++|+|||++| ++...++...||.+
T Consensus 306 --------------------~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 306 --------------------SSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp --------------------SSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred --------------------CCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence 1134567899999866 45556677777754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.27 E-value=7.2e-10 Score=115.15 Aligned_cols=280 Identities=6% Similarity=-0.042 Sum_probs=148.4
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCC-----CCC
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-----NES 123 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-----~~~ 123 (771)
.++||++....... .......+|+++. ..++..+.+... ....++|||||+.|++..... +..
T Consensus 27 ~~~~~~~~~v~~~~----~~~g~~~~~~~d~--~~~~~~~~~~~~------~~~~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 27 PGAISRRSHITLPA----YFAGTTENWVSCA--GCGVTLGHSLGA------FLSLAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCTTEEEEEECT----TTCSSEEEEEEET--TTTEEEEEEEEC------TTCEEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred cCCCCcceeEEeec----cCCCcceEEEEeC--CCCcEEEEEeCC------CCCcceECCCCCEEEEEcccCcccccccc
Confidence 35677765544321 1124467888664 444444443333 234689999999999876431 122
Q ss_pred CeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004141 124 PIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 124 ~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
...+.+| ..++....+..+.... ......-..+.|||||++|++....
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~--~~~g~~p~~~a~SpDGk~l~va~~~---------------------------- 144 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPR--FSVGPRVHIIGNCASSACLLFFLFG---------------------------- 144 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCS--CCBSCCTTSEEECTTSSCEEEEECS----------------------------
T ss_pred CCeEEEEECCCCcEeeeecCCccce--ecccCCccceEECCCCCEEEEEeCC----------------------------
Confidence 2334455 3444444444332211 0001112478999999999876432
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC------ccceEEEecCCCCCccEEEEEeecCccee------
Q 004141 202 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------SVGQVVWAPLNEGLHQYLVFVGWSSETRK------ 269 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~------~~~~~~wspDg~~~~~~l~~~~~~~~~~~------ 269 (771)
...+++||+.++++......+... ....+++++||+. +++.........
T Consensus 145 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~----~~~~~~~~~~~~~~~~~~ 205 (368)
T d1mdah_ 145 ---------------SSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL----AASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp ---------------SSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC----EEEECCSSCCCCEECCCC
T ss_pred ---------------CCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE----EEEEecCCceeeeeeecc
Confidence 246777888777765542122211 2233566778776 555433222100
Q ss_pred ----------------eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC-------------Ccccc
Q 004141 270 ----------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------------ISSAF 320 (771)
Q Consensus 270 ----------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------------~~~~~ 320 (771)
.+.. .......++.+++ ..+....+... .....
T Consensus 206 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~v~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (368)
T d1mdah_ 206 CTGAQNCSSQAAQANYPGML-VWAVASSILQGDI-----------------PAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp SCTTSCBCSCCEEETTTTEE-EECBSSCCEEEEC-----------------CSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccccccceeecccccCcEE-EEecCCCEEEEee-----------------cCCceEEEeecccccceeeeeeecCCCce
Confidence 0010 1122335666665 33332222111 11134
Q ss_pred ceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCC
Q 004141 321 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 400 (771)
Q Consensus 321 ~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg 400 (771)
..+++||++.++......... ......+|+++|..+++......... ....+.|||||
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~--~~~~~~~v~v~D~~t~~~~~~~~~~~--------------------~~~~~a~spDG 325 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRS--CLAAAENTSSVTASVGQTSGPISNGH--------------------DSDAIIAAQDG 325 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSC--TTSCEEEEEEEESSSCCEEECCEEEE--------------------EECEEEECCSS
T ss_pred eEEEcCCCCEEEEEecCCCce--eecCCceEEEEECCCCcEeEEecCCC--------------------ceeEEEECCCC
Confidence 578999999887665543211 11233579999998876422111110 13467899999
Q ss_pred CEEEEEeeeCCeeEEEEEECCCCcEEEecC
Q 004141 401 CTMLLSSIWGSSQVIISVNVSSGELLRITP 430 (771)
Q Consensus 401 ~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~ 430 (771)
+.++|.+.. +...|+.+|..+|+......
T Consensus 326 ~~~ly~s~~-~~~~v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 326 ASDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SCEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred CEEEEEEeC-CCCeEEEEECCCCCEEEEEE
Confidence 876665543 33468888999998775544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.26 E-value=2.9e-10 Score=120.91 Aligned_cols=79 Identities=8% Similarity=-0.025 Sum_probs=48.8
Q ss_pred CCCCCccccCCCEEEEEeeeC----CeeEEEEEECCCCcEE-Eec---------CCCCCceeeEEeecCCEEEEEEe-CC
Q 004141 390 SILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RIT---------PAESNFSWSLLTLDGDNIIAVSS-SP 454 (771)
Q Consensus 390 ~~~~~~~s~Dg~~l~~~~~~~----~~~~l~~~d~~tg~~~-~l~---------~~~~~~~~~~~s~dg~~l~~~~~-~~ 454 (771)
.+..++|+|||++|++..... ....|..+|+++++.. .+. .....+....|||||++++++.. +.
T Consensus 305 ~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~ 384 (426)
T d1hzua2 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384 (426)
T ss_dssp CCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCT
T ss_pred ceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCC
Confidence 356788999999987643211 1124666788887632 221 11222344679999999988763 34
Q ss_pred CCCCeEEEEEeccc
Q 004141 455 VDVPQVKYGYFVDK 468 (771)
Q Consensus 455 ~~p~~l~~~~~~~~ 468 (771)
.....|.+.|..+.
T Consensus 385 ~~~~~i~v~D~~T~ 398 (426)
T d1hzua2 385 NDSSALVVVDDKTL 398 (426)
T ss_dssp TSCCEEEEEETTTT
T ss_pred CCCCeEEEEECCCC
Confidence 55666777775443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.25 E-value=2.5e-10 Score=114.68 Aligned_cols=265 Identities=14% Similarity=0.145 Sum_probs=142.4
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
..+...+|||||++||..+... .+.+|+ .++..+. ......+ ...++.|+|||+.++. +.+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~--~~~~h~~------~v~~v~~~~~g~~~~~-~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRV--FPDVHAT------MITGIKTTSKGDLFTV-SWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEC--SSCSCSS------CEEEEEECTTSCEEEE-ETTTEE
T ss_pred CCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcCCCCC------cEEEEEeeccceeecc-cceeeE
Confidence 4588899999999998765433 456663 3332222 2111111 2368999999975544 333221
Q ss_pred CCCCccCCCCCCC--C-CCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 177 SKPTFSLGSTKGG--S-SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 177 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
+ .|........ . .............+.++ |..++......+.+|+.. +...+ ........++|+||++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 79 K--VVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHG--KLTEV---PISYNSSCVALSNDKQF 150 (299)
T ss_dssp E--EECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETT--EEEEE---ECSSCEEEEEECTTSCE
T ss_pred E--EeccCCccccccccccccccccccccccccc-cccccccccccccccccc--ccccc---ccccccccccccccccc
Confidence 1 2221111100 0 00111122223446666 444445556678888743 33333 22334567899999986
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee--cCCCCccccceeecCCCCEE
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--lt~~~~~~~~p~~SpDG~~l 331 (771)
|+..+ .+..|..+|+ .+++... ...+...+....|+|+|+.|
T Consensus 151 ----l~~g~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 151 ----VAVGG---------------QDSKVHVYKL-----------------SGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp ----EEEEE---------------TTSEEEEEEE-----------------ETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ----ccccc---------------cccccccccc-----------------ccccccccccccccccccccccccccccc
Confidence 66554 2346788887 4444332 23345567889999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..+.+. .|++||+.++........ +.+ +...+..++|+|||+.|+ +...++
T Consensus 195 ~~~~~d~-----------~i~~~~~~~~~~~~~~~~---------------~~~-h~~~v~~l~~s~~~~~l~-sgs~dg 246 (299)
T d1nr0a2 195 VATDQSR-----------KVIPYSVANNFELAHTNS---------------WTF-HTAKVACVSWSPDNVRLA-TGSLDN 246 (299)
T ss_dssp EEEETTS-----------CEEEEEGGGTTEESCCCC---------------CCC-CSSCEEEEEECTTSSEEE-EEETTS
T ss_pred ccccccc-----------cccccccccccccccccc---------------ccc-cccccccccccccccceE-EEcCCC
Confidence 8766542 488888876543211110 000 111245678999998664 444455
Q ss_pred eeEEEEEECCCCcEE--EecCC-CCCceeeEEeecCCEEEEEE
Q 004141 412 SQVIISVNVSSGELL--RITPA-ESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~--~l~~~-~~~~~~~~~s~dg~~l~~~~ 451 (771)
...|| |+.+++.. ..... ....-...++++++.|+...
T Consensus 247 ~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s 287 (299)
T d1nr0a2 247 SVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG 287 (299)
T ss_dssp CEEEE--ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE
T ss_pred EEEEE--ECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe
Confidence 54454 66665432 22222 12222345667777766544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=3e-10 Score=118.23 Aligned_cols=254 Identities=9% Similarity=0.048 Sum_probs=141.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
+...+|||||+.||+..... .+.+| .+++...+..+. +..+. +.+++|||||++|+..+.
T Consensus 10 It~~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~-gH~~~------V~~l~fsp~~~~l~s~s~------ 71 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQ------VTGVDWAPDSNRIVTCGT------ 71 (371)
T ss_dssp CCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSC------EEEEEEETTTTEEEEEET------
T ss_pred eEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEec-CCCCC------EEEEEECCCCCEEEEEEC------
Confidence 67889999999998875432 34455 334433333331 11122 279999999999887643
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
+..|++||+.+++..... -......+..+.|+||++.
T Consensus 72 --------------------------------------D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~---- 109 (371)
T d1k8kc_ 72 --------------------------------------DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK---- 109 (371)
T ss_dssp --------------------------------------TSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE----
T ss_pred --------------------------------------CCeEEEEeeccccccccccccccccccccccccccccc----
Confidence 257899999887654331 0223446788999999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc---ceecCCCCccccceeecCCCCEEEEE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFL 334 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~lt~~~~~~~~p~~SpDG~~l~f~ 334 (771)
|+..+. ++...+|.++. .... ..........+.+..|+|||+.|+..
T Consensus 110 l~~~s~-------------d~~i~i~~~~~-----------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 110 FAVGSG-------------SRVISICYFEQ-----------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEET-------------TSSEEEEEEET-----------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ceeecc-------------cCcceeeeeec-----------------ccccccccccccccccccccccccccccceecc
Confidence 776651 22224555543 1111 11222334567889999999999877
Q ss_pred ecCCCCCCCCccccccceeeecCCCCCCCCccce--eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCe
Q 004141 335 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI--VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 412 (771)
Q Consensus 335 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~ 412 (771)
+.+. .+.+|+............. ........... ... .....+..++|+|||+.|+.. ..++.
T Consensus 160 s~D~-----------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~s~~g~~l~s~-~~d~~ 224 (371)
T d1k8kc_ 160 SCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESS-SSCGWVHGVCFSANGSRVAWV-SHDST 224 (371)
T ss_dssp ETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECC-CCSSCEEEEEECSSSSEEEEE-ETTTE
T ss_pred ccCc-----------EEEEEeeccCccccccccccccccccceeeee--ecc-CccCcEEEEEeeccccccccc-ccCCc
Confidence 6553 3666776544322111000 00000000000 000 011124567899999976544 44554
Q ss_pred eEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEE
Q 004141 413 QVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 413 ~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~ 464 (771)
|..+|+.+++.. .+......+....|+++++.| ++.+ +....++..+
T Consensus 225 --i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l-a~g~--d~~~~~~~~~ 272 (371)
T d1k8kc_ 225 --VCLADADKKMAVATLASETLPLLAVTFITESSLV-AAGH--DCFPVLFTYD 272 (371)
T ss_dssp --EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE-EEET--TSSCEEEEEE
T ss_pred --ceEEeeecccceeeeecccccceeeeecCCCCEE-EEEc--CCceEEEEee
Confidence 555577666644 344434445567889988644 3333 3344455544
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=2.3e-10 Score=119.16 Aligned_cols=260 Identities=12% Similarity=0.077 Sum_probs=138.6
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEE
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 128 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 128 (771)
.++||+.|++.. ..+.|.+|++... +..++. .+....+.+...+|||||++|+..+.. +.-.+|.
T Consensus 15 ~s~dg~~la~~~---------~~~~i~iw~~~~~--~~~~~~--~l~gH~~~V~~l~fsp~~~~l~s~s~D--~~i~vWd 79 (371)
T d1k8kc_ 15 WNKDRTQIAICP---------NNHEVHIYEKSGN--KWVQVH--ELKEHNGQVTGVDWAPDSNRIVTCGTD--RNAYVWT 79 (371)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETT--EEEEEE--EEECCSSCEEEEEEETTTTEEEEEETT--SCEEEEE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEECCCC--CEEEEE--EecCCCCCEEEEEECCCCCEEEEEECC--CeEEEEe
Confidence 367999888753 2245666666432 222211 111122568899999999999876543 2223333
Q ss_pred EecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCc
Q 004141 129 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 208 (771)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 208 (771)
+. .+......... ...+. +.++.|+|||+.|+..+.+
T Consensus 80 ~~-~~~~~~~~~~~-~~~~~------v~~i~~~p~~~~l~~~s~d----------------------------------- 116 (371)
T d1k8kc_ 80 LK-GRTWKPTLVIL-RINRA------ARCVRWAPNEKKFAVGSGS----------------------------------- 116 (371)
T ss_dssp EE-TTEEEEEEECC-CCSSC------EEEEEECTTSSEEEEEETT-----------------------------------
T ss_pred ec-ccccccccccc-ccccc------ccccccccccccceeeccc-----------------------------------
Confidence 32 33333333321 11111 2688999999999886533
Q ss_pred CcccCCccCceEEEEEccCCceeec---cCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEE
Q 004141 209 GETYAGKRQPSLFVININSGEVQAV---KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 285 (771)
Q Consensus 209 g~~~~~~~~~~l~v~d~~~~~~~~l---~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~ 285 (771)
..|.+|+++....... ........+..+.|+|||+. |+..+. +..|.++
T Consensus 117 ---------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~----l~s~s~---------------D~~v~v~ 168 (371)
T d1k8kc_ 117 ---------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL----LAAGSC---------------DFKCRIF 168 (371)
T ss_dssp ---------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE----EEEEET---------------TSCEEEE
T ss_pred ---------Ccceeeeeecccccccccccccccccccccccccccccc----eecccc---------------CcEEEEE
Confidence 3455555544332111 00223345678899999997 776552 2245555
Q ss_pred ecccccch-hhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 286 RVSLYKSE-ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 286 d~~~~~~~-~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
++...... .............+. ......+...+...+|||||+.|+..+.+. .|.+||+.++....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-----------~i~iwd~~~~~~~~ 237 (371)
T d1k8kc_ 169 SAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKKMAVA 237 (371)
T ss_dssp ECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGTTEEE
T ss_pred eeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC-----------cceEEeeeccccee
Confidence 54211000 000000000001111 122334455678899999999998877652 48889987654311
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
... . ....+..++|+|||+.| .+ ..++...+|.++..++...
T Consensus 238 ~~~----------~---------~~~~v~s~~fs~d~~~l-a~-g~d~~~~~~~~~~~~~~~~ 279 (371)
T d1k8kc_ 238 TLA----------S---------ETLPLLAVTFITESSLV-AA-GHDCFPVLFTYDSAAGKLS 279 (371)
T ss_dssp EEE----------C---------SSCCEEEEEEEETTEEE-EE-ETTSSCEEEEEETTTTEEE
T ss_pred eee----------c---------ccccceeeeecCCCCEE-EE-EcCCceEEEEeeCCCceEE
Confidence 100 0 00123467899999744 33 3356677888887665554
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.22 E-value=3.9e-10 Score=117.20 Aligned_cols=279 Identities=13% Similarity=-0.007 Sum_probs=157.5
Q ss_pred ceEEEeCCCCCeEEEEe-cCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVR-NPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+.+|||+...+.. ....+..++|.++ ..++....+..... ..+.|||||+.|++......
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-----------~~~a~spDg~~i~~~~~~~~--- 87 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFA--- 87 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEET---
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-----------CcceECCCCCEEEEEcccCc---
Confidence 34456789999865443 2233566788888 66666666554332 37899999999999754321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCC------CCccceEEEecCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK------SLSVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~------~~~~~~~~wspDg~ 252 (771)
....+.....|.+||..++++......+. ......++|||||+
T Consensus 88 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 88 -------------------------------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp -------------------------------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred -------------------------------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 11112345779999999988654311111 12345789999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCC--------Cccccceee
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--------ISSAFFPRF 324 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~--------~~~~~~p~~ 324 (771)
+ |++... ....|+++|+ .+++....... .+......+
T Consensus 137 ~----l~va~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 137 C----LLFFLF--------------GSSAAAGLSV-----------------PGASDDQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp C----EEEEEC--------------SSSCEEEEEE-----------------TTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred E----EEEEeC--------------CCCeEEEEEC-----------------CCCcEeEEeeccCcceEccCCCceEEEE
Confidence 9 887642 2237888887 55543322111 112344677
Q ss_pred cCCCCEEEEEecCCCCCCC--------Cc-----------------cccccceeeecCCCCCCCCccceeeEEecccccC
Q 004141 325 SPDGKFLVFLSAKSSVDSG--------AH-----------------SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 379 (771)
Q Consensus 325 SpDG~~l~f~~~~~~~~~g--------~~-----------------~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 379 (771)
|+||+.+++.......... .+ ....+++++++..+....+ .......
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~ 253 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK--------AAIDGNE 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEE--------CCCCSSC
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEE--------eeccccc
Confidence 8999877765543311000 00 0011234444433332111 0000000
Q ss_pred CCCC-cccccCCCCCCccccCCCEEEEEeeeC------CeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEe
Q 004141 380 GDCF-PGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 452 (771)
Q Consensus 380 ~~~f-~g~~~~~~~~~~~s~Dg~~l~~~~~~~------~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~ 452 (771)
.... .+........++++++++.+++..... ....|+.+|..+++...............||+||+.++++..
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~ 333 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEe
Confidence 0000 000112334678899999887766543 235799999999986644333333445789999987666665
Q ss_pred CCCCCCeEEEEEecccC
Q 004141 453 SPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 453 ~~~~p~~l~~~~~~~~~ 469 (771)
..+ ..|++++..+++
T Consensus 334 ~~~--~~v~v~D~~tgk 348 (368)
T d1mdah_ 334 AGT--EVLDIYDAASDQ 348 (368)
T ss_dssp TTT--TEEEEEESSSCE
T ss_pred CCC--CeEEEEECCCCC
Confidence 433 468888876553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.18 E-value=6.5e-10 Score=118.09 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=68.1
Q ss_pred eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004141 310 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 310 ~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
..|..+...+.+.+|||||++|+...... ........|.+||+++++.... +.++-.... .. ....
T Consensus 297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~----~s~~~~~tv~vwd~~t~~~~~~------~~~~~~~~~---~~-~~~~ 362 (426)
T d1hzua2 297 AELQGQGGGSLFIKTHPKSSHLYVDTTFN----PDARISQSVAVFDLKNLDAKYQ------VLPIAEWAD---LG-EGAK 362 (426)
T ss_dssp EEEECSSSCCCCEECCTTCSEEEECCTTC----SSHHHHTCEEEEETTCTTSCCE------EECHHHHHC---CC-SSCC
T ss_pred EEEecCCCceeEEEcCCCCceEEEeecCC----CCcccCCEEEEEECCCCCcCeE------Eeccchhcc---cC-CCCc
Confidence 34444555678899999999998643221 1112235689999988765221 111000000 00 0011
Q ss_pred CCCCCccccCCCEEEEEeee--CCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCE
Q 004141 390 SILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 446 (771)
Q Consensus 390 ~~~~~~~s~Dg~~l~~~~~~--~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~ 446 (771)
.+..++|||||++|+++... .....|..+|.+|+++........ .++|+|++
T Consensus 363 rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~ 416 (426)
T d1hzua2 363 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF 416 (426)
T ss_dssp CEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence 23356799999999887532 234457778999999876655432 34566654
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=99.15 E-value=1.2e-11 Score=119.42 Aligned_cols=200 Identities=11% Similarity=0.003 Sum_probs=108.6
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
.++.++||++||.+++ ...|..+++.|. +|.|+++|++| ++. .++++.+.+..+ .
T Consensus 14 ~~~~~~l~~lhg~~g~--~~~~~~la~~L~--~~~v~~~~~~g---~~~-------------~a~~~~~~i~~~-----~ 68 (230)
T d1jmkc_ 14 QDQEQIIFAFPPVLGY--GLMYQNLSSRLP--SYKLCAFDFIE---EED-------------RLDRYADLIQKL-----Q 68 (230)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHCT--TEEEEEECCCC---STT-------------HHHHHHHHHHHH-----C
T ss_pred CCCCCeEEEEcCCCCC--HHHHHHHHHHCC--CCEEeccCcCC---HHH-------------HHHHHHHHHHHh-----C
Confidence 3456899999997766 457888888883 79999999997 321 245555555443 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCc---eeEEEecCCccchhh--hhcCCCCCcchhhhhccCCCCccCCCCCChhhH
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDK---FVAAAARNPLCNLAL--MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDL 688 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~---~~~~v~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (771)
...++.|+||||||.+++.+|.++|++ +..++...+...... .................. ...........
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 144 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYKKQGVSDLDGRTVESDVEALMNVNR----DNEALNSEAVK 144 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCEECCCC--------CCHHHHHHHTT----TCSGGGSHHHH
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccccCccchhhhhhhhhhhhhhhhhhccc----cccccccHHHH
Confidence 346799999999999999999876543 444444333221100 000000000000000000 00000011110
Q ss_pred HH--------HhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCC-ChHHHH
Q 004141 689 TR--------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQ-SDFESF 759 (771)
Q Consensus 689 ~~--------~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~-~~~~~~ 759 (771)
.. +...........+++|+++++|++|..++... ..+.+ ....+++++.+++ +|.....+ ...++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~i~~p~l~i~g~~D~~~~~~~-~~w~~---~~~~~~~~~~i~g-~H~~ml~~~~~~~va 219 (230)
T d1jmkc_ 145 HGLKQKTHAFYSYYVNLISTGQVKADIDLLTSGADFDIPEWL-ASWEE---ATTGAYRMKRGFG-THAEMLQGETLDRNA 219 (230)
T ss_dssp HHHHHHHHHHHHHHHHCCCCSCBSSEEEEEECSSCCCCCTTE-ECSGG---GBSSCEEEEECSS-CGGGTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccccCcceeeeecCCcccchhH-HHHHH---hccCCcEEEEEcC-CChhhcCCccHHHHH
Confidence 00 01111123456788999999999999987542 22211 1223578888985 89754332 223445
Q ss_pred HHHHHHHH
Q 004141 760 LNIGLWFK 767 (771)
Q Consensus 760 ~~i~~fl~ 767 (771)
+.|.+||+
T Consensus 220 ~~I~~~L~ 227 (230)
T d1jmkc_ 220 GILLEFLN 227 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555654
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.15 E-value=1.4e-11 Score=122.95 Aligned_cols=219 Identities=11% Similarity=0.068 Sum_probs=121.3
Q ss_pred CCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcC
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMG 611 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~ 611 (771)
.....|.+|++||.........|..++..|. .++.|+++|++| +|.+... ........++++.+.+ +.+...
T Consensus 56 ~~~~~~~l~c~~~~~~~g~~~~y~~la~~L~-~~~~V~al~~pG---~~~~~~~--~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 56 RAEGRAVLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPG---YGTGTGT--GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp --CCCCEEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHHHhcC-CCceEEEEeCCC---CCCCCCC--ccccccCCHHHHHHHHHHHHHHh-
Confidence 4456788999998432223456777888875 469999999999 5433211 1112223455555433 334443
Q ss_pred CCCCCeEEEEEcChhHHHHHHHHhhC----CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChh-
Q 004141 612 LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE- 686 (771)
Q Consensus 612 ~~d~~ri~l~G~S~GG~~a~~~a~~~----p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 686 (771)
....++.|+||||||.+++.+|.+. +..+.++++..+......... ... .......... ..........
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~-~~~-~~~~~~~~~~---~~~~~~~~~~l 202 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPI-EVW-SRQLGEGLFA---GELEPMSDARL 202 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHH-HHT-HHHHHHHHHH---TCSSCCCHHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccch-hhh-hhhhHHHhhc---ccccccccHHH
Confidence 2346799999999999999988764 456888888765432110000 000 0000000000 0000000000
Q ss_pred -hHHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHH
Q 004141 687 -DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLW 765 (771)
Q Consensus 687 -~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~f 765 (771)
....+.+.........+++|+++++|++|..++.+....+.+.+ ...++++.+++ +|.....++...+.+.|.+|
T Consensus 203 ~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w~~~~---~~~~~~~~v~G-~H~~ml~e~~~~vA~~i~~~ 278 (283)
T d2h7xa1 203 LAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDWRAHW---DLPHTVADVPG-DHFTMMRDHAPAVAEAVLSW 278 (283)
T ss_dssp HHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCCSCCC---SSCSEEEEESS-CTTHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHHHHhC---CCCcEEEEEcC-CCcccccCCHHHHHHHHHHH
Confidence 00111111111234578899999999999999877655443222 23468888987 78643334555777888999
Q ss_pred HHH
Q 004141 766 FKK 768 (771)
Q Consensus 766 l~~ 768 (771)
|+.
T Consensus 279 L~~ 281 (283)
T d2h7xa1 279 LDA 281 (283)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1e-09 Score=114.46 Aligned_cols=261 Identities=15% Similarity=0.061 Sum_probs=134.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcc---------cccccCCCcccceeecCCCCeE
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTV---------HGSVYADGWFEGISWNSDETLI 167 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~wSpDg~~l 167 (771)
+.+...+|||||++||...+ + ...+| ..++........... ......+..+.+++|||||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~d---~---~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCN---K---TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEECB---S---CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEeC---C---eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 45888999999999886432 2 24455 223322222110000 0000112234689999999999
Q ss_pred EEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEE
Q 004141 168 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 247 (771)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~w 247 (771)
+..+.+...+ .|+............+........+.++....+.+.....+.+||..+...... ...........|
T Consensus 137 ~s~~~dg~v~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~ 212 (388)
T d1erja_ 137 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 212 (388)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred eecccccccc--cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc--cccccccccccc
Confidence 9887665432 222111111111111222222344555554555556678899999988876555 233333344555
Q ss_pred ec-CCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee-------cCCCCcc
Q 004141 248 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN-------LTESISS 318 (771)
Q Consensus 248 sp-Dg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~-------lt~~~~~ 318 (771)
+| |++. |+..+ .+..|+++++ .++.. .. +..+...
T Consensus 213 ~~~~~~~----l~~~~---------------~d~~i~i~~~-----------------~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 213 SPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp CSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred cCCCCCe----EEEEc---------------CCCeEEEeec-----------------ccCccceeeccccccccCCCCC
Confidence 55 6664 55444 2235777776 33321 22 2234456
Q ss_pred ccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee--EEecccccCCCCCcccccCCCCCCcc
Q 004141 319 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIPVVQCAEGDCFPGLYSSSILSNPW 396 (771)
Q Consensus 319 ~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~g~~~~~~~~~~~ 396 (771)
+....|+|||+.|+..+.+ ..|.+||+.++........... ...... .+...+..++|
T Consensus 257 v~~l~~s~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~ 316 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGSLD-----------RSVKLWNLQNANNKSDSKTPNSGTCEVTYI---------GHKDFVLSVAT 316 (388)
T ss_dssp EEEEEECTTSSEEEEEETT-----------SEEEEEEC---------------CEEEEEE---------CCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECC-----------CcEEEEeccCCccccccccccccceeeecc---------cccceEEEEEE
Confidence 7889999999998876654 2588888876654322111100 000000 01113456789
Q ss_pred ccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 397 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 397 s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
+|||+.|+ +...++. |+.+|+.+++....
T Consensus 317 s~~~~~l~-sg~~dg~--i~vwd~~~~~~~~~ 345 (388)
T d1erja_ 317 TQNDEYIL-SGSKDRG--VLFWDKKSGNPLLM 345 (388)
T ss_dssp CGGGCEEE-EEETTSE--EEEEETTTCCEEEE
T ss_pred CCCCCEEE-EEeCCCE--EEEEECCCCcEEEE
Confidence 99998664 4444544 55568888876543
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=99.12 E-value=9.4e-11 Score=119.50 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=77.3
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchH-H---HHHHHHCCcEEEEECCCCCCCCChhhhhcCC----------CCccccchhh
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSK-S---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP----------GKVGSQDVND 599 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~-~---~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~----------~~~~~~~~~D 599 (771)
..+.++||++|+-.++.....|.. . -..+--..|-||++|..|++ +|.+...... .++....+.|
T Consensus 41 ~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~-~gst~p~s~~p~~~~~~~yg~~FP~~ti~D 119 (376)
T d2vata1 41 VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSP-FGSAGPCSPDPDAEGQRPYGAKFPRTTIRD 119 (376)
T ss_dssp TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCS-SSSSSTTSBCTTTC--CBCGGGCCCCCHHH
T ss_pred CCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCC-cCCCCCCCCCcccccCCcccccCCcchhHH
Confidence 456799999999554433333321 1 12333466999999999864 3332222111 1123346789
Q ss_pred HHHHHHHHHHcCCCCCCeE-EEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 600 VLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 600 ~~~~i~~l~~~~~~d~~ri-~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
+.++-..|++.- .-+++ +|+|.||||+.|+.++.++|+++..+|.++...
T Consensus 120 ~v~aq~~ll~~L--GI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~~ 170 (376)
T d2vata1 120 DVRIHRQVLDRL--GVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSC 170 (376)
T ss_dssp HHHHHHHHHHHH--TCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCS
T ss_pred HHHHHHHHHHHh--CcceEEEeecccHHHHHHHHHHHhchHHHhhhccccccc
Confidence 988877777763 34566 699999999999999999999999888777644
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.11 E-value=2.8e-11 Score=120.57 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=83.0
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEE-ecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChh-hH
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE-DL 688 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 688 (771)
..+|++||+|+|+|+||++|+.++..+|+.|++++ ..++... . ...+ ......... ......... ..
T Consensus 6 y~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~-~---ca~~---~~~~~~~~~----~~~~~~~~~~~~ 74 (318)
T d2d81a1 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPY-D---CARN---QYYTSCMYN----GYPSITTPTANM 74 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCT-T---TTSS---SCGGGGSTT----CCCCCHHHHHHH
T ss_pred cCCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCch-h---hhcc---cchHHHhhc----CCCCCcChhHHH
Confidence 35899999999999999999999999999996433 2333210 0 0000 000000000 000000111 12
Q ss_pred HHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCC--CEEEEEeCCCCccCC
Q 004141 689 TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGV--ETKVIVFPNDVHGIE 750 (771)
Q Consensus 689 ~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~~H~~~ 750 (771)
..+...++.........|+||+||++|.+||+.++++++++|++.+. +++++.+++++|.+.
T Consensus 75 ~~~~~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 75 KSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp HHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTTTSCGGGEEEEEETTCCSSEE
T ss_pred HHHhhcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHcCcCCCceEEEEeCCCCCCCC
Confidence 22223333333444568999999999999999999999999988644 689999999999874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=4.8e-09 Score=107.77 Aligned_cols=270 Identities=11% Similarity=0.020 Sum_probs=143.6
Q ss_pred ecCCCCcceEEEEEeech-hhcccceeEEEEEEeecCCCCccceeecCC-c--cccccceEEEeCCCCCeEEEEecCCCC
Q 004141 47 NSGNGNGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSVTFQWAPF-P--VEMTGASAVVPSPSGSKLLVVRNPENE 122 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~-~--~~~~~~~~~~~SPdG~~la~~~~~~~~ 122 (771)
...||||++|++...... ...+.....++++|+.+. +.++....+. . .........+|||||+++++.....
T Consensus 52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-- 127 (355)
T d2bbkh_ 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-- 127 (355)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--
T ss_pred eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC--CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--
Confidence 356899999987654322 223334567777775332 3221111110 0 0011234578999999997765432
Q ss_pred CCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCc
Q 004141 123 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 201 (771)
Q Consensus 123 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (771)
...+...+ ..+...+.+...... .++..+....+.+++||+.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~~~~v~~~~~--------------------------- 178 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLAKVAFGTE--------------------------- 178 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEEEETTSCEEEEECCSS---------------------------
T ss_pred CceeeeeecCCCcEeeEEecCCcc--eEeecCCcceEEEcCCCCEEEEEecCC---------------------------
Confidence 22333333 344444444332211 112222234678999999877653221
Q ss_pred ccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCce
Q 004141 202 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 281 (771)
Q Consensus 202 ~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 281 (771)
..+.+.+..+... ..........+++++.. +++.+ ....
T Consensus 179 ----------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~---------------~~~~ 217 (355)
T d2bbkh_ 179 ----------------GTPEITHTEVFHP------EDEFLINHPAYSQKAGR----LVWPT---------------YTGK 217 (355)
T ss_dssp ----------------SCCEEEECCCCSC------TTSCBCSCCEEETTTTE----EEEEB---------------TTSE
T ss_pred ----------------CeEEEEecccccc------eecceeeeccccCCCCe----EEEec---------------CCCe
Confidence 2233344333221 11122344577888887 88775 2236
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCcceecCCC-------------CccccceeecCCCCEEEEEecCCCCCCCCcccc
Q 004141 282 LYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 348 (771)
Q Consensus 282 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~-------------~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~ 348 (771)
++++++ .++....+... ........++|||+.+++......... .....
T Consensus 218 ~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~ 279 (355)
T d2bbkh_ 218 IHQIDL-----------------SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR-HKTAS 279 (355)
T ss_dssp EEEEEC-----------------TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC-TTSCE
T ss_pred EEEEec-----------------CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee-ecCCC
Confidence 777776 44433222110 112345789999999887766542110 01223
Q ss_pred ccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe
Q 004141 349 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 428 (771)
Q Consensus 349 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l 428 (771)
..|+++|..+++........ ..+..++|||||+.+++.+.. ....|+.+|+.+|++.+-
T Consensus 280 ~~v~v~d~~t~~~~~~~~~~--------------------~~~~~~a~spDG~~~l~v~~~-~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKFEMG--------------------HEIDSINVSQDEKPLLYALST-GDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EEEEEEETTTCCEEEEEEEE--------------------EEECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCCcEEEEecCC--------------------CCEEEEEEcCCCCeEEEEEEC-CCCEEEEEECCCCCEEEE
Confidence 57899998876642111100 013467899999976665542 335688889999987654
Q ss_pred c
Q 004141 429 T 429 (771)
Q Consensus 429 ~ 429 (771)
.
T Consensus 339 i 339 (355)
T d2bbkh_ 339 V 339 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=8.1e-09 Score=104.74 Aligned_cols=263 Identities=10% Similarity=0.009 Sum_probs=140.4
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+++||||++++...... ..+..++ ..++............ .......++|||||++++..........
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~---~~v~v~D~~t~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~~~~~~~ 107 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEE----RVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTE----EEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccEEEECCCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCcc----cccceeeEEEcCCCcEEEEeecCCccee
Confidence 356789999999886553322 3455555 4555555444422110 0011247899999999988754332110
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
.........+.++|..+++.... .+....+..++|+|||+. +
T Consensus 108 --------------------------------~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T d1pbyb_ 108 --------------------------------THFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------------SCEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------------eeccccccceeeccccCCeEEEe--ccccCCceEEEEcCCCCE----E
Confidence 00111346889999999887666 444455778899999998 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecC-
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK- 337 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~- 337 (771)
+..+. .++.+|. .+++...............++|++..+......
T Consensus 150 ~~~~~-----------------~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 150 YGLGR-----------------DLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEESS-----------------SEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEEcC-----------------Ccceeee-----------------ecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 76541 3455565 333322211112222333445555433211110
Q ss_pred ------------CCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEE
Q 004141 338 ------------SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 405 (771)
Q Consensus 338 ------------~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~ 405 (771)
.............+.++++.++......... .........++++++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI------------------MDVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE------------------CSSCEEEEEECTTSSEEEE
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC------------------CCcceEEEEecccceEEEE
Confidence 0000000111223555555544321100000 0001224467888886654
Q ss_pred EeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 406 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 406 ~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
.. ..|..+|+.+++...............|++||+.|+.... -..|.+.+..+.
T Consensus 258 ~~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~----~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 258 AY-----NVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA----LGDLAAYDAETL 311 (337)
T ss_dssp EE-----SEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB----SSEEEEEETTTC
T ss_pred cc-----ccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC----CCcEEEEECCCC
Confidence 32 3577889999886655444444556789999998876432 245888887554
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.10 E-value=1.9e-09 Score=108.10 Aligned_cols=278 Identities=10% Similarity=0.060 Sum_probs=150.3
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||+.||..+.+. .+.+| ..++..+.+.... + .+..+.|+|++..++........
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~h~---~------~V~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT---D------SVQDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS---S------CEEEEEECTTSSEEEEEETTSCC
T ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeCCC---C------cEEEEeeeccccccccccccccc
Confidence 5688999999999998766543 45566 3444444433211 1 12689999999999887655432
Q ss_pred CCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCcc
Q 004141 177 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~ 256 (771)
.. +......................+.++....++......+.+||+.+++..... ......+..+.|+||++.
T Consensus 84 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 157 (317)
T d1vyhc1 84 KL--WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 157 (317)
T ss_dssp CE--EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred cc--ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCE---
Confidence 21 111111111111112222223445666555556666788999999888754441 233445678899999986
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEe
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 335 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~ 335 (771)
|+..+ .+..|..+++ ..++ ...+......+....|+|++..+....
T Consensus 158 -l~~~~---------------~d~~v~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 204 (317)
T d1vyhc1 158 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 204 (317)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEe---------------CCCeEEEEee-----------------ccceeeEEEecCCCCceEEEEeeccccceeec
Confidence 66554 2235667776 3332 334444444455566666554321111
Q ss_pred cCCCCCC-----CC----ccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEE
Q 004141 336 AKSSVDS-----GA----HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 406 (771)
Q Consensus 336 ~~~~~~~-----g~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~ 406 (771)
....... +. ......|.++|+.++..... +.. +...+..++|+||++.|+ +
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l~-s 264 (317)
T d1vyhc1 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT----------LVG---------HDNWVRGVLFHSGGKFIL-S 264 (317)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSCEE-E
T ss_pred cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEE----------EeC---------CCCCEEEEEECCCCCEEE-E
Confidence 1000000 00 00113467777766543111 000 011244678999998664 4
Q ss_pred eeeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEE
Q 004141 407 SIWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
...++. |..+|+.+++.. .+......+....|+++++.|+...
T Consensus 265 ~~~dg~--i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 265 CADDKT--LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp EETTTE--EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred EECCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 444554 555577777644 4444444556667889988776544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=8.8e-10 Score=112.19 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=40.7
Q ss_pred CCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec--CCCCCceeeEEeecCCEEEEEE
Q 004141 393 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 393 ~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~--~~~~~~~~~~~s~dg~~l~~~~ 451 (771)
...+++|++++++.....+...+|.++.+++..+... ..........|+|||++|+++.
T Consensus 234 ~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~ 294 (333)
T d1ri6a_ 234 DIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG 294 (333)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC
T ss_pred eEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEE
Confidence 3568999998887777777788988887665544332 2222234568999999987554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.06 E-value=1e-08 Score=106.11 Aligned_cols=169 Identities=14% Similarity=0.047 Sum_probs=102.3
Q ss_pred ceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....++||||+++++..... ....++|.++ ..++....+..... ..+.|||||++|++.......
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~-----------~~~a~SpDG~~l~va~~~~~~-- 89 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-----------PNPVAAHSGSEFALASTSFSR-- 89 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC-----------ccEEEcCCCCEEEEEeecCCc--
Confidence 56678999999996653322 1345688887 55555444432221 378999999999987544311
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC------CccceEEEecCCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNE 252 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~------~~~~~~~wspDg~ 252 (771)
.........|.+||+.++++......+.. .......|+|||+
T Consensus 90 --------------------------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 90 --------------------------------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred --------------------------------ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 11122446899999999987654211211 1235678999999
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 332 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~ 332 (771)
. +++..+.. ...+..++. .+.+... .........++|||+.++
T Consensus 138 ~----~~v~~~~~-------------~~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~s~~g~~~~ 180 (373)
T d2madh_ 138 D----LLFFQFAA-------------GPAVGLVVQ-----------------GGSSDDQ---LLSSPTCYHIHPGAPSTF 180 (373)
T ss_pred c----EEEEEEcC-------------CCceEEeec-----------------cCCeEEE---EeccceeEEEecCCCcEE
Confidence 8 87765322 224555554 3333221 122345678999999875
Q ss_pred EEecCCCCCCCCccccccceeeecCCCCC
Q 004141 333 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 333 f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+....+ ..+.+++..++..
T Consensus 181 v~~~~d----------g~~~~~~~~~~~~ 199 (373)
T d2madh_ 181 YLLCAQ----------GGLAKTDHAGGAA 199 (373)
T ss_pred EEEcCC----------CeEEEEEcCCcee
Confidence 554433 3577888776554
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.06 E-value=4.5e-10 Score=111.56 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..++| ||++||.+.+.....|......|+++||.|+.+|++|. |... .....+++.++|+++.+..
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g~---g~~d--------~~~sae~la~~i~~v~~~~-- 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF---MLND--------TQVNTEYMVNAITALYAGS-- 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTTT---TCSC--------HHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCCC---CCCc--------hHhHHHHHHHHHHHHHHhc--
Confidence 34445 78899965443222345678899999999999999983 3221 1223677888888888763
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCC---CceeEEEecCCccc
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 652 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p---~~~~~~v~~~p~~~ 652 (771)
..++|.|+||||||.++.+++..+| ++++.+|.+++...
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~~ 136 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCCC
Confidence 3578999999999999999999887 46888888887653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.06 E-value=5.7e-09 Score=106.39 Aligned_cols=305 Identities=8% Similarity=-0.012 Sum_probs=156.2
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
|+.++||++++.... .+.|.++|+.+. +...-. .++. .......+|||||+++++....+ ..+
T Consensus 2 ~a~~~~~~~l~~~~~---------~~~v~v~D~~t~--~~~~t~--~~~~-~~~p~~l~~spDG~~l~v~~~~~---~~v 64 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY---------PNNLHVVDVASD--TVYKSC--VMPD-KFGPGTAMMAPDNRTAYVLNNHY---GDI 64 (346)
T ss_dssp CCCCTTCEEEEEEET---------TTEEEEEETTTT--EEEEEE--ECSS-CCSSCEEEECTTSSEEEEEETTT---TEE
T ss_pred ccCCCCCcEEEEEcC---------CCEEEEEECCCC--CEEEEE--EcCC-CCCcceEEECCCCCEEEEEECCC---CcE
Confidence 456789998887542 247888777433 222111 1111 12356899999999886543322 345
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccccc
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 205 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (771)
..++ ..++............+.. .....+.|||||++|+..........
T Consensus 65 ~~~d~~t~~~~~~~~~~~~~~~~~---~~~~~v~~s~DG~~l~v~~~~~~~~~--------------------------- 114 (346)
T d1jmxb_ 65 YGIDLDTCKNTFHANLSSVPGEVG---RSMYSFAISPDGKEVYATVNPTQRLN--------------------------- 114 (346)
T ss_dssp EEEETTTTEEEEEEESCCSTTEEE---ECSSCEEECTTSSEEEEEEEEEEECS---------------------------
T ss_pred EEEeCccCeeeeeecccccccccC---CceEEEEEecCCCEEEEEecCCccee---------------------------
Confidence 5554 4444444443322111000 01147899999998876654321100
Q ss_pred CCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEE
Q 004141 206 EDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 284 (771)
Q Consensus 206 ~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~ 284 (771)
.........+.++|..+++..... ............+++|++ ++..+ ..+..
T Consensus 115 -----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------------~~~~~ 167 (346)
T d1jmxb_ 115 -----DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-----LYVAG-----------------PDIYK 167 (346)
T ss_dssp -----SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-----EEEES-----------------SSEEE
T ss_pred -----eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE-----EEEeC-----------------CcceE
Confidence 000113467888998877643321 011122344556677765 43332 14666
Q ss_pred EecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCC---------------CCccccc
Q 004141 285 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS---------------GAHSATD 349 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~---------------g~~~~~~ 349 (771)
+++ .+++...............++|+|+.++.......... -......
T Consensus 168 ~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 168 MDV-----------------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp ECT-----------------TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred EEc-----------------cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 666 44443332222334566778888886643332210000 0000112
Q ss_pred cceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEec
Q 004141 350 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 429 (771)
Q Consensus 350 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~ 429 (771)
.+.++|+.++........ + .........+++++..+++... ..+..+|..+++..+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~----------~--------~~~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~~ 288 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFA----------D--------LTELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKAA 288 (346)
T ss_dssp EEEEEETTTCCEEEEEEE----------E--------CSSCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCceEEEEee----------c--------ccceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEEE
Confidence 244444443332110000 0 0011234567788877765443 25777899998876554
Q ss_pred CCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 430 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 430 ~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
..........|++||++|+....+ ..|.+.+..+.
T Consensus 289 ~~~~~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~ 323 (346)
T d1jmxb_ 289 NLDHTYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTL 323 (346)
T ss_dssp ECSSCCCEEEECSSSSCEEEESBS----SEEEEEETTTT
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECccC
Confidence 433345668999999988865432 46888887544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=2.1e-09 Score=112.01 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=131.9
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
..+...+|||||++|+.....+ .+.+|+......+.... ...+ ....+.|++++..++..+......
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~-~h~~------~v~~~~~~~~~~~~~~~~~~~~i~- 188 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ-GHEQ------DIYSLDYFPSGDKLVSGSGDRTVR- 188 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSS------CEEEEEECTTSSEEEEEETTSEEE-
T ss_pred CCEEEEEECCCCCcceeccccc-----ccccccccccccccccc-cccc------cccccccccccccccccccceeee-
Confidence 3477899999999998765543 45566322222222221 1111 125889999999888876554321
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccC-CcCcccCCccCceEEEEEccCCceeec-c-----CCCCCCccceEEEecCC
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAV-K-----GIPKSLSVGQVVWAPLN 251 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~~~~~~l-~-----~~~~~~~~~~~~wspDg 251 (771)
.|+......... ...........+.+ +....+++.....|+++|..++..... . .......+..+.|+|||
T Consensus 189 -~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 189 -IWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp -EEETTTTEEEEE-EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred -eeeccccccccc-cccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence 121110000000 00001111112222 222233344567899999988765332 1 01123357789999999
Q ss_pred CCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCCCCE
Q 004141 252 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKF 330 (771)
Q Consensus 252 ~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpDG~~ 330 (771)
+. |+..+ .+..|.++|+....... .......+ .......+...+...+|||||+.
T Consensus 267 ~~----l~s~~---------------~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 322 (388)
T d1erja_ 267 QS----VVSGS---------------LDRSVKLWNLQNANNKS-----DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY 322 (388)
T ss_dssp SE----EEEEE---------------TTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCE
T ss_pred CE----EEEEE---------------CCCcEEEEeccCCcccc-----ccccccccceeeecccccceEEEEEECCCCCE
Confidence 97 77655 22356677662110000 00000011 11222334556788999999998
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCcccee-eEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~ 409 (771)
|+..+.+ ..|++||+.+++......+.. .+..+. ......|+||++.| ++...
T Consensus 323 l~sg~~d-----------g~i~vwd~~~~~~~~~l~~H~~~V~~~~--------------~~~~~~~spd~~~l-~s~s~ 376 (388)
T d1erja_ 323 ILSGSKD-----------RGVLFWDKKSGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYNVF-ATGSG 376 (388)
T ss_dssp EEEEETT-----------SEEEEEETTTCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCEEE-EEEET
T ss_pred EEEEeCC-----------CEEEEEECCCCcEEEEEeCCCCCEEEEE--------------EecCcccCCCCCEE-EEEeC
Confidence 8876654 258999998776432111110 011000 12345799999854 56667
Q ss_pred CCeeEEEEEE
Q 004141 410 GSSQVIISVN 419 (771)
Q Consensus 410 ~~~~~l~~~d 419 (771)
++...||.+.
T Consensus 377 Dg~I~iW~~~ 386 (388)
T d1erja_ 377 DCKARIWKYK 386 (388)
T ss_dssp TSEEEEEEEE
T ss_pred CCEEEEEeee
Confidence 7787888653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.03 E-value=4.7e-10 Score=112.59 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=128.3
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||+.|+-.. ..+.+.+|++... +..+... ......+...+|+|||+.++.. ..+ ...+
T Consensus 21 s~dg~~l~s~s---------~Dg~v~vWd~~~~--~~~~~~~---~~h~~~v~~v~~~~~g~~~~~~-~d~-----~v~~ 80 (299)
T d1nr0a2 21 SADGKTLFSAD---------AEGHINSWDISTG--ISNRVFP---DVHATMITGIKTTSKGDLFTVS-WDD-----HLKV 80 (299)
T ss_dssp CTTSSEEEEEE---------TTSCEEEEETTTC--CEEECSS---CSCSSCEEEEEECTTSCEEEEE-TTT-----EEEE
T ss_pred CCCCCEEEEEc---------CCCeEEEEECCCC--cEEEEEc---CCCCCcEEEEEeeccceeeccc-cee-----eEEE
Confidence 67888776432 2356777776432 2221110 1122457889999999865433 221 2334
Q ss_pred e-cCCc-c---eEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCccc
Q 004141 130 W-SQSQ-L---EKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 203 (771)
Q Consensus 130 ~-~~~~-~---~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (771)
| ..+. . .... ..... ...+.|||||+.++....... ..|...... ......-.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~s~~g~~~~~~~~~~i---~~~~~~~~~----~~~~~~~~~~~~ 143 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQ----------PLGLAVSADGDIAVAACYKHI---AIYSHGKLT----EVPISYNSSCVA 143 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSC----------EEEEEECTTSSCEEEEESSEE---EEEETTEEE----EEECSSCEEEEE
T ss_pred eccCCcccccccccccccccc----------ccccccccccccccccccccc---ccccccccc----cccccccccccc
Confidence 4 2221 1 1111 11111 247889999997766543221 011100000 000000011344
Q ss_pred ccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeE
Q 004141 204 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 283 (771)
Q Consensus 204 ~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~ 283 (771)
+.++....+++.....|.+||+.+++...+........+..++|+||++. |+..+ ....|+
T Consensus 144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~~~~---------------~d~~i~ 204 (299)
T d1nr0a2 144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----LVATD---------------QSRKVI 204 (299)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc---------------cccccc
Confidence 66665455566677899999999887655421334456788999999997 76654 233688
Q ss_pred EEecccccchhhhhhhhcCCCCCCc----ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCC
Q 004141 284 AVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 359 (771)
Q Consensus 284 ~~d~~~~~~~~~~~~~~~~~~~~~~----~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~ 359 (771)
++|+ .++. ...+..+...+....|+|||++|+..+.+. .|++||+.++
T Consensus 205 ~~~~-----------------~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----------~i~iwd~~~~ 256 (299)
T d1nr0a2 205 PYSV-----------------ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN-----------SVIVWNMNKP 256 (299)
T ss_dssp EEEG-----------------GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTCT
T ss_pred cccc-----------------cccccccccccccccccccccccccccccceEEEcCCC-----------EEEEEECCCC
Confidence 8887 3322 223344455688899999999998777553 4889998876
Q ss_pred CC
Q 004141 360 GN 361 (771)
Q Consensus 360 ~~ 361 (771)
..
T Consensus 257 ~~ 258 (299)
T d1nr0a2 257 SD 258 (299)
T ss_dssp TS
T ss_pred Cc
Confidence 54
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.01 E-value=1.1e-08 Score=103.69 Aligned_cols=268 Identities=12% Similarity=0.093 Sum_probs=140.0
Q ss_pred ccceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCC
Q 004141 99 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 176 (771)
Q Consensus 99 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~ 176 (771)
+.+...+|||||++||..+..+ .+.+|+ .++....+..... .+..++|+|||+.|+..+.+...
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~~~---------~v~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLRSS---------WVMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECSCS---------CEEEEEECTTSSEEEEEETTCCE
T ss_pred CCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEecccc---------cEEeeEeeccceeeeeeccccee
Confidence 4588899999999998776543 567773 3333333332111 22689999999999988765532
Q ss_pred CCCCccCCCCCCCCC----CccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCC
Q 004141 177 SKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 252 (771)
Q Consensus 177 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~ 252 (771)
.. +.......... ...+...........+ ..............+........... ......+....+.+++.
T Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (340)
T d1tbga_ 122 SI--YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EE--EESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSS
T ss_pred ec--ccccccccccccceecccccccccccccccc-cccccccccccccccccccccccccc-cccceeEeeeccccccc
Confidence 21 11000000000 0000000000000000 00001111122333333332222211 12222344556666665
Q ss_pred CCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEE
Q 004141 253 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFL 331 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l 331 (771)
. ++... ....|.++|+ ..++ ...+..+...+.+.+|+|||+.|
T Consensus 198 ~----~~~~~---------------~d~~v~i~d~-----------------~~~~~~~~~~~h~~~i~~v~~~p~~~~l 241 (340)
T d1tbga_ 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTTEEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred e----eEEee---------------cCceEEEEEC-----------------CCCcEEEEEeCCCCCeEEEEECCCCCEE
Confidence 3 33322 3347888887 4444 45566667778899999999998
Q ss_pred EEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCC
Q 004141 332 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 411 (771)
Q Consensus 332 ~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~ 411 (771)
+..+.+. .|.++|+.......... . .. ....+..++|+|||+.|+ +...++
T Consensus 242 ~s~s~d~-----------~i~~~~~~~~~~~~~~~----------~--~~-----~~~~i~~~~~s~~~~~l~-~g~~dg 292 (340)
T d1tbga_ 242 ATGSDDA-----------TCRLFDLRADQELMTYS----------H--DN-----IICGITSVSFSKSGRLLL-AGYDDF 292 (340)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEEEC----------C--TT-----CCSCEEEEEECSSSCEEE-EEETTS
T ss_pred EEEeCCC-----------eEEEEeecccccccccc----------c--cc-----ccCceEEEEECCCCCEEE-EEECCC
Confidence 8776553 47888876644311100 0 00 001244678999998664 444455
Q ss_pred eeEEEEEECCCCcEEEecC-CCCCceeeEEeecCCEEEEEE
Q 004141 412 SQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVS 451 (771)
Q Consensus 412 ~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s~dg~~l~~~~ 451 (771)
. |..+|+.+++...... ....+....|+++++.|+...
T Consensus 293 ~--i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 293 N--CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp C--EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred E--EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence 4 4555888887665443 344556677889988776543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.01 E-value=3.7e-08 Score=104.21 Aligned_cols=198 Identities=9% Similarity=-0.046 Sum_probs=113.1
Q ss_pred CCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 51 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 51 ~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
.|...+.+..... .+.+.++|..+. +.. .+... ......+|||||++++..+.. + .+.++
T Consensus 28 ~~~~~~~~v~~~d-------~g~v~v~D~~t~--~v~~~~~~g------~~~~~v~fSpDG~~l~~~s~d--g--~v~~~ 88 (432)
T d1qksa2 28 WDLENLFSVTLRD-------AGQIALIDGSTY--EIKTVLDTG------YAVHISRLSASGRYLFVIGRD--G--KVNMI 88 (432)
T ss_dssp CCGGGEEEEEETT-------TTEEEEEETTTC--CEEEEEECS------SCEEEEEECTTSCEEEEEETT--S--EEEEE
T ss_pred CCCCcEEEEEEcC-------CCEEEEEECCCC--cEEEEEeCC------CCeeEEEECCCCCEEEEEcCC--C--CEEEE
Confidence 4556665554332 356777775322 222 22222 246788999999999765432 2 23333
Q ss_pred e-cCCcceEEEec--CCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccC
Q 004141 130 W-SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 206 (771)
Q Consensus 130 ~-~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (771)
+ ..++...+..+ .....+.+ ..+.|||||++|+..+..
T Consensus 89 d~~t~~~~~~~~i~~~~~~~~~~------~s~~~SpDG~~l~vs~~~--------------------------------- 129 (432)
T d1qksa2 89 DLWMKEPTTVAEIKIGSEARSIE------TSKMEGWEDKYAIAGAYW--------------------------------- 129 (432)
T ss_dssp ETTSSSCCEEEEEECCSEEEEEE------ECCSTTCTTTEEEEEEEE---------------------------------
T ss_pred EeeCCCceEEEEEecCCCCCCeE------EecccCCCCCEEEEEcCC---------------------------------
Confidence 3 33443333322 22222222 366799999988765432
Q ss_pred CcCcccCCccCceEEEEEccCCceeeccCCC----------CCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeec
Q 004141 207 DWGETYAGKRQPSLFVININSGEVQAVKGIP----------KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 276 (771)
Q Consensus 207 d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~----------~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~ 276 (771)
...+.+||.+++++....... .......+.+||||+. +++...
T Consensus 130 ----------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~----~~vs~~------------- 182 (432)
T d1qksa2 130 ----------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE----FIVNVK------------- 182 (432)
T ss_dssp ----------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE----EEEEET-------------
T ss_pred ----------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCE----EEEEEc-------------
Confidence 367899999998876652000 0112234577888886 665542
Q ss_pred cCCceeEEEecccccchhhhhhhhcCCCCCCcceecC--CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceee
Q 004141 277 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 354 (771)
Q Consensus 277 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt--~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~ 354 (771)
....|+.++. .+.+...+. ..........|||||++++..+... ..+.++
T Consensus 183 -~~~~i~~~d~-----------------~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~----------~~v~v~ 234 (432)
T d1qksa2 183 -ETGKILLVDY-----------------TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANAR----------NKLVVI 234 (432)
T ss_dssp -TTTEEEEEET-----------------TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGG----------TEEEEE
T ss_pred -cCCeEEEEEc-----------------cCCCcceEEEEcccCccccceECCCCCEEEEecccc----------ceEEEe
Confidence 2347888887 443322221 1223456789999999988777553 467888
Q ss_pred ecCCCCC
Q 004141 355 DWPTNGN 361 (771)
Q Consensus 355 d~~~~~~ 361 (771)
|..++..
T Consensus 235 d~~~~~~ 241 (432)
T d1qksa2 235 DTKEGKL 241 (432)
T ss_dssp ETTTTEE
T ss_pred ecccceE
Confidence 8776543
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=5.6e-09 Score=104.49 Aligned_cols=285 Identities=11% Similarity=0.024 Sum_probs=153.5
Q ss_pred CCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 004141 50 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 129 (771)
Q Consensus 50 s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~ 129 (771)
+|||..|+-. ...+.|.+|++.... ....+.. ....+....|+|+|..++...... ...+
T Consensus 26 sp~~~~l~s~---------s~Dg~i~iWd~~~~~-~~~~~~~-----h~~~V~~~~~~~~~~~~~~~~~~~-----~~~~ 85 (317)
T d1vyhc1 26 HPVFSVMVSA---------SEDATIKVWDYETGD-FERTLKG-----HTDSVQDISFDHSGKLLASCSADM-----TIKL 85 (317)
T ss_dssp CSSSSEEEEE---------ESSSCEEEEETTTCC-CCEEECC-----CSSCEEEEEECTTSSEEEEEETTS-----CCCE
T ss_pred cCCCCEEEEE---------eCCCeEEEEECCCCC-EEEEEeC-----CCCcEEEEeeeccccccccccccc-----cccc
Confidence 4566655532 234567777774331 2222221 225678899999999998765443 1222
Q ss_pred ecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcC
Q 004141 130 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 209 (771)
Q Consensus 130 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 209 (771)
+............ ... .......|+|+++.|+....+.... .|+............+........+.++..
T Consensus 86 ~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (317)
T d1vyhc1 86 WDFQGFECIRTMH-GHD------HNVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDGT 156 (317)
T ss_dssp EETTSSCEEECCC-CCS------SCEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred ccccccccccccc-ccc------ccceeeeccCCCceEEeeccCccee--EeecccceeeeEEccCCCcceeeecccCCC
Confidence 2111111111111 111 1125788999999998876654321 222111111111112222233445666655
Q ss_pred cccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcc----ee-eeeeeeccCCceeEE
Q 004141 210 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET----RK-LGIKYCYNRPCALYA 284 (771)
Q Consensus 210 ~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~----~~-~g~~~~~~~~~~l~~ 284 (771)
..+++.....+.++++.+++..... ......+..+.|+|++.. +......... .. .........+..|..
T Consensus 157 ~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 231 (317)
T d1vyhc1 157 LIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSY----SSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231 (317)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGG----GGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred EEEEEeCCCeEEEEeeccceeeEEE-ecCCCCceEEEEeecccc----ceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence 5555566788999999887765431 233445667788887653 2211100000 00 000111123457888
Q ss_pred EecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCC
Q 004141 285 VRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 363 (771)
Q Consensus 285 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~ 363 (771)
+++ .+++ ...+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...
T Consensus 232 ~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 232 WDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD-----------KTLRVWDYKNKRCMK 283 (317)
T ss_dssp EET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETT-----------TEEEEECCTTSCCCE
T ss_pred EEC-----------------CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECC-----------CeEEEEECCCCcEEE
Confidence 887 4444 35555666778899999999998876654 258899988765432
Q ss_pred CccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 364 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.... +...+..++|+||++.| ++...++...||
T Consensus 284 ~~~~-------------------h~~~V~~~~~s~~~~~l-~s~s~Dg~i~iW 316 (317)
T d1vyhc1 284 TLNA-------------------HEHFVTSLDFHKTAPYV-VTGSVDQTVKVW 316 (317)
T ss_dssp EEEC-------------------CSSCEEEEEECSSSSCE-EEEETTSEEEEE
T ss_pred EEcC-------------------CCCCEEEEEEcCCCCEE-EEEeCCCeEEEe
Confidence 1111 01134567899999866 455566666665
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.98 E-value=8.4e-07 Score=93.31 Aligned_cols=282 Identities=12% Similarity=0.097 Sum_probs=156.5
Q ss_pred eEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
...++||||+++||..+.+| +...+.+++ .+++..... +.... ++.+.|++|++.|+|..........
T Consensus 128 ~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~---------~~~~~W~~D~~~~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK---------FSCMAWTHDGKGMFYNAYPQQDGKS 197 (430)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC---------SCCEEECTTSSEEEEEECCCCSSCC
T ss_pred cceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc---------ccceEEcCCCCEEEEEEeccccCcc
Confidence 34578999999999877654 445566666 555433211 11111 1478999999999998755422110
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCcee--eccCCC-CCCccceEEEecCCCCCcc
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIP-KSLSVGQVVWAPLNEGLHQ 256 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~--~l~~~~-~~~~~~~~~wspDg~~~~~ 256 (771)
. +..-.......++...+.+.... .+-... .......+..|+||+.
T Consensus 198 ~----------------------------~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~--- 246 (430)
T d1qfma1 198 D----------------------------GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--- 246 (430)
T ss_dssp S----------------------------SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE---
T ss_pred c----------------------------ccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce---
Confidence 0 00000112357888887765432 221111 1222345567899987
Q ss_pred EEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEec
Q 004141 257 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 336 (771)
Q Consensus 257 ~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~ 336 (771)
++....... .....+|.+|+...+ .. .........+.......... ...+|..+++.++
T Consensus 247 -l~i~~~~~~----------~~~~~~~~~d~~~~~---~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn 305 (430)
T d1qfma1 247 -VLLSIREGC----------DPVNRLWYCDLQQES---NG------ITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTN 305 (430)
T ss_dssp -EEEEEECSS----------SSCCEEEEEEGGGSS---SS------SCSSCCCEEEECSSSSCEEE-EEEETTEEEEEEC
T ss_pred -eeEEeeccC----------CccEEEEEeeCCCcc---cc------cccccceeEeecccccceEE-EecCCceeecccC
Confidence 766543221 123478899873100 00 00000112222221112222 3346777877787
Q ss_pred CCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 337 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 337 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
.. ....+|..+++....... ...+++ . .+.. ......+-.+..|++....++..+|.
T Consensus 306 ~~-------a~~~~L~~~~~~~~~~~~----w~~vi~---~-~~~~--------~~~~~~~~~~~~lvl~~~~~~~~~l~ 362 (430)
T d1qfma1 306 RH-------SPNYRLINIDFTDPEESK----WKVLVP---E-HEKD--------VLEWVACVRSNFLVLCYLHDVKNTLQ 362 (430)
T ss_dssp TT-------CTTCEEEEEETTBCCGGG----CEEEEC---C-CSSC--------EEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred cc-------cccceeEEecCCCCcccc----ceEEec---c-cCcc--------eeeeEEEEECCEEEEEEEcCCEeEEE
Confidence 65 234679999886543211 111111 0 0000 00112233455788887788899999
Q ss_pred EEECCCCcEEEecCCCCCceeeEE--eecCCEEEEEEeCCCCCCeEEEEEecccC
Q 004141 417 SVNVSSGELLRITPAESNFSWSLL--TLDGDNIIAVSSSPVDVPQVKYGYFVDKA 469 (771)
Q Consensus 417 ~~d~~tg~~~~l~~~~~~~~~~~~--s~dg~~l~~~~~~~~~p~~l~~~~~~~~~ 469 (771)
.+++++++...+..... .+...+ ..+.+.+++..+++.+|+.+|.+++.+++
T Consensus 363 v~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 363 LHDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EEETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 99999999888865543 222333 35677899999999999999999987664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.92 E-value=2.5e-09 Score=113.49 Aligned_cols=189 Identities=11% Similarity=-0.043 Sum_probs=116.2
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|.+||.+++++... ++....+..++|||||++ |+..+ +...|.++|+
T Consensus 41 ~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~----l~~~s---------------~dg~v~~~d~--------- 90 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRY----LFVIG---------------RDGKVNMIDL--------- 90 (432)
T ss_dssp TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EEEEc---------------CCCCEEEEEe---------
Confidence 36899999999988766 444456889999999997 76544 3347888887
Q ss_pred hhhhcCCCCCCcce---ec---CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 297 LELKESSSEDLPVV---NL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 297 ~~~~~~~~~~~~~~---~l---t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+++.. .+ ..+.+.+.+|.|||||++|+.....+ ..+.+||..+++..........
T Consensus 91 --------~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 91 --------WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp --------TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEE
T ss_pred --------eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCc
Confidence 554422 22 22334577899999999986555432 4588999888775433221111
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecC--CCCCceeeEEeecCCEEE
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNII 448 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~--~~~~~~~~~~s~dg~~l~ 448 (771)
... ...+. .......+.+|+||+.++++... ...++.++..+++..++.. .........|+|||++++
T Consensus 153 ~~~------~~~~~--~~~~~~~v~~s~dg~~~~vs~~~--~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~ 222 (432)
T d1qksa2 153 TYD------EQEYH--PEPRVAAILASHYRPEFIVNVKE--TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 222 (432)
T ss_dssp CTT------TCCEE--SCCCEEEEEECSSSSEEEEEETT--TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred ccc------ceecc--CCCceeEEEECCCCCEEEEEEcc--CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEE
Confidence 000 00000 00011234678999987776543 3467778887776444322 222345578999999888
Q ss_pred EEEeCCCCCCeEEEEEec
Q 004141 449 AVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 449 ~~~~~~~~p~~l~~~~~~ 466 (771)
+..... ..+.+.+..
T Consensus 223 va~~~~---~~v~v~d~~ 237 (432)
T d1qksa2 223 TAANAR---NKLVVIDTK 237 (432)
T ss_dssp EEEGGG---TEEEEEETT
T ss_pred Eecccc---ceEEEeecc
Confidence 876543 345555544
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.5e-07 Score=95.20 Aligned_cols=210 Identities=13% Similarity=0.046 Sum_probs=116.3
Q ss_pred cceEEEeCC--CCCeEEEEecCCCCCCeEEEEecCCcceEEEe-c---CCcccccccCCCcccceeecCCCCeEEEEecC
Q 004141 100 GASAVVPSP--SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-V---PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 173 (771)
Q Consensus 100 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~ 173 (771)
.+...+||| ||++||-.+.. +.-.+|.+..+.....+.. . .....+ .+..+.|||||++|+.++..
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~D--g~i~iWd~~~~~~~~~~~~~~~~~~~~~~~------~v~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDES--GKVIVWGWTFDKESNSVEVNVKSEFQVLAG------PISDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETT--SEEEEEEEEEEGGGTEEEEEEEEEEECCSS------CEEEEEECTTSSEEEEEECC
T ss_pred CEEEEEEeeCCCCCEEEEEeCC--CCEEEeeecCCcceeeeecccccccccccC------cEEEEEECCCCCccceeecc
Confidence 478899998 56677654432 3333444432222211111 0 001111 23689999999999887643
Q ss_pred CCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCC
Q 004141 174 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 253 (771)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~ 253 (771)
. ...+.+++.++++..... ......+..+.|+|+++.
T Consensus 137 ~------------------------------------------~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 137 R------------------------------------------DNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPM 173 (325)
T ss_dssp S------------------------------------------SCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSC
T ss_pred c------------------------------------------cceEEEEeecccccceee-eecccccccccccccccc
Confidence 2 235677777777654331 234456788999999987
Q ss_pred CccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-ee---cCCCCccccceeecCCCC
Q 004141 254 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VN---LTESISSAFFPRFSPDGK 329 (771)
Q Consensus 254 ~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~---lt~~~~~~~~p~~SpDG~ 329 (771)
++.++. .+..|.++++ ...+. .. .......+....|+||+.
T Consensus 174 ----~~~~~~--------------~d~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 174 ----RSMTVG--------------DDGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp ----EEEEEE--------------TTTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred ----eEEEee--------------cccccccccc-----------------cccccceecccccCCCCccEEeeeccccc
Confidence 776552 2235677776 33221 11 223344578899999864
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc---cCCCEEEEE
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL---SDGCTMLLS 406 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s---~Dg~~l~~~ 406 (771)
.++.....+ ..|.+||+.+++........ . ..+....|+ +||++|+ +
T Consensus 219 ~~l~s~~~d----------~~i~iwd~~~~~~~~~l~~~----------~---------~~v~~~~~s~~~~dg~~l~-s 268 (325)
T d1pgua1 219 EFVITVGSD----------RKISCFDGKSGEFLKYIEDD----------Q---------EPVQGGIFALSWLDSQKFA-T 268 (325)
T ss_dssp CEEEEEETT----------CCEEEEETTTCCEEEECCBT----------T---------BCCCSCEEEEEESSSSEEE-E
T ss_pred eeccccccc----------cceeeeeecccccccccccc----------c---------cccccceeeeeccCCCEEE-E
Confidence 444433322 34888998776542111100 0 012333454 6888664 4
Q ss_pred eeeCCeeEEEEEECCCCcEEE
Q 004141 407 SIWGSSQVIISVNVSSGELLR 427 (771)
Q Consensus 407 ~~~~~~~~l~~~d~~tg~~~~ 427 (771)
...++...|| |+.+++..+
T Consensus 269 ~s~D~~i~iw--d~~~~~~~~ 287 (325)
T d1pgua1 269 VGADATIRVW--DVTTSKCVQ 287 (325)
T ss_dssp EETTSEEEEE--ETTTTEEEE
T ss_pred EeCCCeEEEE--ECCCCCEEE
Confidence 4555555554 888887554
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=6.4e-10 Score=121.77 Aligned_cols=131 Identities=23% Similarity=0.238 Sum_probs=93.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCC-CCCChhhhhcCCCCccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGS 594 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~-~~~g~~~~~~~~~~~~~ 594 (771)
.|.+.| -+|.|.+....++.|+||++|||++..+..........++..+.+||.++||-. -||-.......++ .
T Consensus 94 EDCL~L--nI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~g---N 168 (532)
T d2h7ca1 94 EDCLYL--NIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRG---N 168 (532)
T ss_dssp SCCCEE--EEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCC---C
T ss_pred CcCCEE--EEEECCCCCCCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccccc---c
Confidence 345444 578897666677899999999988765544333334456788999999999941 1121111111223 3
Q ss_pred cchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 004141 595 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 595 ~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~ 651 (771)
.-+.|.+.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|..+|+.++..
T Consensus 169 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~ 230 (532)
T d2h7ca1 169 WGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVA 230 (532)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCT
T ss_pred cccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccc
Confidence 3489999999999885 33699999999999999999887763 245899999988754
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.87 E-value=5.5e-08 Score=98.38 Aligned_cols=253 Identities=13% Similarity=0.089 Sum_probs=129.9
Q ss_pred CCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCccccccceEEEeCCCCCeEEEEecCCC------
Q 004141 49 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN------ 121 (771)
Q Consensus 49 ~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~------ 121 (771)
.||||++++.+.. ....|..+++.+. +.+ .+...............+|||||++++.......
T Consensus 41 ~spDg~~l~v~~~--------~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T d1pbyb_ 41 VAPGGRIAYATVN--------KSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred ECCCCCEEEEEEC--------CCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeec
Confidence 4679987765432 2246777776432 222 2211111111123456899999999977654310
Q ss_pred --CCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCC
Q 004141 122 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 198 (771)
Q Consensus 122 --~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (771)
....+...+ ..+...+.+...... .++.|||||++++...
T Consensus 111 ~~~~~~~~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~--------------------------- 153 (337)
T d1pbyb_ 111 EVQPTRVALYDAETLSRRKAFEAPRQI----------TMLAWARDGSKLYGLG--------------------------- 153 (337)
T ss_dssp EECCCEEEEEETTTTEEEEEEECCSSC----------CCEEECTTSSCEEEES---------------------------
T ss_pred cccccceeeccccCCeEEEeccccCCc----------eEEEEcCCCCEEEEEc---------------------------
Confidence 122233333 333333333433333 4889999999887642
Q ss_pred CCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee---------
Q 004141 199 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK--------- 269 (771)
Q Consensus 199 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~--------- 269 (771)
..+.++|..+++.... .+.........++|++.. +...........
T Consensus 154 -------------------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 208 (337)
T d1pbyb_ 154 -------------------RDLHVMDPEAGTLVED--KPIQSWEAETYAQPDVLA----VWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp -------------------SSEEEEETTTTEEEEE--ECSTTTTTTTBCCCBCCC----CCCCCTTTTEEEEEEEEEBTT
T ss_pred -------------------CCcceeeeecCcEEEE--eecCCccccceecCCcce----eeccccccceeeeeeeeeeec
Confidence 2345677777765444 222222222334455443 221110000000
Q ss_pred eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcce--ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccc
Q 004141 270 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 347 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~ 347 (771)
............++.+++ ..+... .............++|+++.++-..
T Consensus 209 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 259 (337)
T d1pbyb_ 209 IDPADPTAYRTGLLTMDL-----------------ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY------------ 259 (337)
T ss_dssp SCTTSGGGEEEEEEEEET-----------------TTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE------------
T ss_pred cceeeecccCccEEEEEc-----------------CCCcEEEEEecCCCcceEEEEecccceEEEEcc------------
Confidence 000001112235677776 444432 2333344456678899998775332
Q ss_pred cccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE
Q 004141 348 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 426 (771)
Q Consensus 348 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~ 426 (771)
..|.+||+.+++.... +.. ...+..++|||||++|+... .++ .|..+|.++++..
T Consensus 260 -~~i~v~d~~~~~~~~~----------~~~----------~~~~~~~~~s~dG~~l~v~~-~~~--~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 260 -NVLESFDLEKNASIKR----------VPL----------PHSYYSVNVSTDGSTVWLGG-ALG--DLAAYDAETLEKK 314 (337)
T ss_dssp -SEEEEEETTTTEEEEE----------EEC----------SSCCCEEEECTTSCEEEEES-BSS--EEEEEETTTCCEE
T ss_pred -ccEEEEECCCCcEEEE----------EcC----------CCCEEEEEECCCCCEEEEEe-CCC--cEEEEECCCCcEE
Confidence 2488999887654211 000 01345688999999887543 333 4777899887755
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.86 E-value=3.5e-09 Score=104.58 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=75.1
Q ss_pred CCCCcEEEEEcCCCCCCC---CCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004141 534 CSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~---~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..++| ||++||...... ...|......|.+.||.|+++|+++ ++.... ..+++.+.|+.+.+.
T Consensus 5 ~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~---~~~~~~----------~a~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 5 QTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSEV----------RGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHHH----------HHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC---CCCcHH----------HHHHHHHHHHHHHHH
Confidence 45678 799999544321 1236678889999999999999998 443321 244555666655554
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
.+.+++.|+||||||.++..++.++|++++.+|.++..
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 24578999999999999999999999999999887654
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.86 E-value=2.4e-09 Score=108.21 Aligned_cols=103 Identities=18% Similarity=0.316 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCCCCCCCC----CcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004141 535 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~----~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
.++| ||++||.++.... ..|......|+++||.|+++|++| +|.+.. .....+++.+.++.+++.
T Consensus 7 ~k~P-vvlvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g---~g~s~~-------~~~~~~~l~~~i~~~~~~ 75 (319)
T d1cvla_ 7 TRYP-VILVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSG---FQSDDG-------PNGRGEQLLAYVKQVLAA 75 (319)
T ss_dssp CSSC-EEEECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBC---SSCTTS-------TTSHHHHHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCC---CCCCCC-------CcccHHHHHHHHHHHHHH
Confidence 4567 5678996543211 136678889999999999999998 443311 111356666777666665
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCc
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 650 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~ 650 (771)
.+.++|.++||||||.++..++.++|++++.+|.+++.
T Consensus 76 --~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 76 --TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 24688999999999999999999999999999988764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.85 E-value=4.2e-08 Score=99.44 Aligned_cols=248 Identities=8% Similarity=0.021 Sum_probs=136.8
Q ss_pred cceEEEeCCCCCeEEEEecCCCCCCeEEEEecCC--cceEEEecCCcccccccCCCcccceeecC--CCCeEEEEecCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~wSp--Dg~~la~~~~~~~ 175 (771)
.....+|+|+|+.|||..... .++..++.. ....+......... ....++||| ||+.|+..+.
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~----~~i~~~~~~~~~~~~~~~~~gh~~~------~v~~v~fsP~~~g~~lasgs~--- 85 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKS----AFVRCLDDGDSKVPPVVQFTGHGSS------VVTTVKFSPIKGSQYLCSGDE--- 85 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTE----EEEEECCSSCCSSCSEEEECTTTTS------CEEEEEECSSTTCCEEEEEET---
T ss_pred CeEEEEECCCCCEEEEEeCCC----EEEEEEeCCCCCccceEEEeCCCCC------CEEEEEEeeCCCCCEEEEEeC---
Confidence 345678999999999975322 223333322 11112222111111 126899998 5667766432
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceee-ccC------CCCCCccceEEEe
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKG------IPKSLSVGQVVWA 248 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~-l~~------~~~~~~~~~~~ws 248 (771)
+..|.+||+..++... +.. ......+..+.|+
T Consensus 86 -----------------------------------------Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 124 (325)
T d1pgua1 86 -----------------------------------------SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124 (325)
T ss_dssp -----------------------------------------TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC
T ss_pred -----------------------------------------CCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC
Confidence 2567788876543211 100 1123356788999
Q ss_pred cCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCC-cceecCCCCccccceeecCC
Q 004141 249 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPD 327 (771)
Q Consensus 249 pDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~lt~~~~~~~~p~~SpD 327 (771)
|||+. |+.++... ...+..++. +++ ....+..+...+.+..|+|+
T Consensus 125 ~~~~~----l~~~~~~~-------------~~~~~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~ 170 (325)
T d1pgua1 125 FEGRR----LCVVGEGR-------------DNFGVFISW-----------------DSGNSLGEVSGHSQRINACHLKQS 170 (325)
T ss_dssp TTSSE----EEEEECCS-------------SCSEEEEET-----------------TTCCEEEECCSCSSCEEEEEECSS
T ss_pred CCCCc----cceeeccc-------------cceEEEEee-----------------cccccceeeeeccccccccccccc
Confidence 99998 88776322 224555565 334 34566666777889999999
Q ss_pred CCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 328 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 328 G~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
++.++.....+ ..+.++|..+.+.... . . . +.+ ....+..++|+||+..++++.
T Consensus 171 ~~~~~~~~~~d----------~~v~~~d~~~~~~~~~-------~--~-~-----~~~-~~~~v~~v~~~pd~~~~l~s~ 224 (325)
T d1pgua1 171 RPMRSMTVGDD----------GSVVFYQGPPFKFSAS-------D--R-T-----HHK-QGSFVRDVEFSPDSGEFVITV 224 (325)
T ss_dssp SSCEEEEEETT----------TEEEEEETTTBEEEEE-------E--C-S-----SSC-TTCCEEEEEECSTTCCEEEEE
T ss_pred ccceEEEeecc----------ccccccccccccccee-------c--c-c-----ccC-CCCccEEeeeccccceecccc
Confidence 99866555433 2477777655332110 0 0 0 000 001234678999876677777
Q ss_pred eeCCeeEEEEEECCCCcEEEecC-CCCCceeeEEe---ecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 408 IWGSSQVIISVNVSSGELLRITP-AESNFSWSLLT---LDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~~l~~-~~~~~~~~~~s---~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
..++...+| |+.+++...... ....+....|+ +|++.|+....+ ..+.+.++.+
T Consensus 225 ~~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D----~~i~iwd~~~ 282 (325)
T d1pgua1 225 GSDRKISCF--DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD----ATIRVWDVTT 282 (325)
T ss_dssp ETTCCEEEE--ETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT----SEEEEEETTT
T ss_pred ccccceeee--eeccccccccccccccccccceeeeeccCCCEEEEEeCC----CeEEEEECCC
Confidence 666665555 888887655443 22222223444 577776654422 3456656543
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=6.5e-10 Score=110.10 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=59.5
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHH-HHHHHHHcCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGL 612 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~ 612 (771)
+.+.| ||++||++++ ...|...+..| ++.|+++|++|. |.+. .++++.+ .++.+.+.
T Consensus 23 ~~~~P-l~l~Hg~~gs--~~~~~~l~~~L---~~~v~~~d~~g~---~~~~-----------~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 23 SSERP-LFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRA---APLD-----------SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CCSCC-EEEECCTTCC--CGGGHHHHHTC---SSCEEEECCCTT---SCCS-----------CHHHHHHHHHHHHHHH--
T ss_pred CCCCe-EEEECCCCcc--HHHHHHHHHHc---CCeEEEEeCCCC---CCCC-----------CHHHHHHHHHHHHHHh--
Confidence 34455 7899998876 44676666555 789999999983 3221 1223222 22233333
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCC
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 649 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p 649 (771)
...+++.|+||||||.+|+.+|.++|++...++....
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 2357899999999999999999999988777665543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.84 E-value=1.4e-08 Score=102.97 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=88.6
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|..+++
T Consensus 200 ~~~~~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~----l~s~s---------------~d~~i~~~~~---- 255 (340)
T d1tbga_ 200 VSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDL---- 255 (340)
T ss_dssp EEEETTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET----
T ss_pred EEeecCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCE----EEEEe---------------CCCeEEEEee----
Confidence 34455678999999988765541 334456788999999987 76655 2336778887
Q ss_pred chhhhhhhhcCCCCCCcc-eec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccce
Q 004141 292 SEASELELKESSSEDLPV-VNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 368 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~ 368 (771)
..... ..+ ......+....|+|||+.|+..+.+ ..|++||+.+++......+
T Consensus 256 -------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~- 310 (340)
T d1tbga_ 256 -------------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADRAGVLAG- 310 (340)
T ss_dssp -------------TTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETT-----------SCEEEEETTTCCEEEEECC-
T ss_pred -------------cccccccccccccccCceEEEEECCCCCEEEEEECC-----------CEEEEEECCCCcEEEEEcC-
Confidence 33332 222 2334457889999999988766654 2488999877654221111
Q ss_pred eeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEE
Q 004141 369 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 416 (771)
Q Consensus 369 ~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~ 416 (771)
+...+..++|+|||+.| ++.+.++...||
T Consensus 311 ------------------H~~~V~~l~~s~d~~~l-~s~s~Dg~v~iW 339 (340)
T d1tbga_ 311 ------------------HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp ------------------CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred ------------------CCCCEEEEEEeCCCCEE-EEEccCCEEEEe
Confidence 11134567899999865 555666666666
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.78 E-value=2.5e-09 Score=115.27 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=87.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcch-H-HHHHHHHCCcEEEEECCCCC-CCCC--hhhhhcCCCCcccc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-K-SLAFLSSVGYSLLIVNYRGS-LGFG--EEALQSLPGKVGSQ 595 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~-~-~~~~la~~G~~Vv~~d~rG~-~~~g--~~~~~~~~~~~~~~ 595 (771)
|..-+|.|+. ..++.|+||++|||++..+..... . ....+++.+++||.++||-. -|+- .+.....++ ..
T Consensus 82 L~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~g---N~ 156 (483)
T d1qe3a_ 82 LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSD---NL 156 (483)
T ss_dssp CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSCS---CH
T ss_pred CEEEEEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhcccccccccccc---cc
Confidence 4455788974 567899999999988665443221 1 23345566899999999931 1121 111111233 33
Q ss_pred chhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 596 DVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
-+.|++.|++|+.++ ...|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 157 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 157 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 489999999999886 336999999999999999998887632 25899999998864
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.77 E-value=3.7e-09 Score=115.39 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=87.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc-c--hHHH--HHHHHCCcEEEEECCCCC-CCCC--hhhhhcCCCCc
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKSL--AFLSSVGYSLLIVNYRGS-LGFG--EEALQSLPGKV 592 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~-~--~~~~--~~la~~G~~Vv~~d~rG~-~~~g--~~~~~~~~~~~ 592 (771)
|..-++.|+.....++.|+||++|||++...... + .... ..++.++++||.++||-. -|+- .......+++
T Consensus 98 L~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~~~gN- 176 (534)
T d1llfa_ 98 LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKAEGSGN- 176 (534)
T ss_dssp CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHHHTCTT-
T ss_pred CEEEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCcccccccccc-
Confidence 4445888976666788999999999887554332 2 1222 244578999999999942 1111 1111122333
Q ss_pred cccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh-----CC---CceeEEEecCCc
Q 004141 593 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ-----AP---DKFVAAAARNPL 650 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~-----~p---~~~~~~v~~~p~ 650 (771)
.-+.|++.|++|+.++ ...|+++|.|+|+|.||..+..++.. .| .+|..+|+.++.
T Consensus 177 --~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 177 --AGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred --cchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 3488999999999886 23699999999999999988655531 11 369999998874
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.76 E-value=3.7e-09 Score=115.54 Aligned_cols=132 Identities=17% Similarity=0.162 Sum_probs=90.8
Q ss_pred cCCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc---hHHH--HHHHHCCcEEEEECCCC-CCCCC--hhhhh
Q 004141 515 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSL--AFLSSVGYSLLIVNYRG-SLGFG--EEALQ 586 (771)
Q Consensus 515 ~~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~---~~~~--~~la~~G~~Vv~~d~rG-~~~~g--~~~~~ 586 (771)
+.|.+ ..-+|.|++....++.|+||++|||++..+.... .... ...+..+.+||.++||- .-||- .+...
T Consensus 102 sEDCL--~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 102 NEDCL--YLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCC--EEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCC--EEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 34554 4457789876667889999999999876543321 2222 23356889999999993 11121 11112
Q ss_pred cCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--------CCceeEEEecCCcc
Q 004141 587 SLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 651 (771)
Q Consensus 587 ~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--------p~~~~~~v~~~p~~ 651 (771)
..++++ -+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|+.+|+.++..
T Consensus 180 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~~ 252 (544)
T d1thga_ 180 EGNTNA---GLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred cccccH---HHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhcccccccccc
Confidence 223444 388999999999885 336999999999999999888776531 24899999988753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.75 E-value=2.7e-07 Score=93.53 Aligned_cols=100 Identities=8% Similarity=0.030 Sum_probs=64.6
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
|++|++|+++++..... .+.+++ ..++..+.+.++... ...++.|||||++|+....
T Consensus 2 ~a~~~~~~~l~~~~~~~----~v~v~D~~t~~~~~t~~~~~~~--------~p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKF--------GPGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCC--------SSCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcCCC----EEEEEECCCCCEEEEEEcCCCC--------CcceEEECCCCCEEEEEEC----------
Confidence 68999999998865443 455555 445544444443221 0148999999998865432
Q ss_pred CCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC-----CccceEEEecCCCCCccE
Q 004141 183 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~-----~~~~~~~wspDg~~~~~~ 257 (771)
....|++||+.+++.......... ..+..++|||||+.
T Consensus 60 ---------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---- 102 (346)
T d1jmxb_ 60 ---------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE---- 102 (346)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE----
T ss_pred ---------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE----
Confidence 236899999999876543101111 13567899999997
Q ss_pred EEEEe
Q 004141 258 LVFVG 262 (771)
Q Consensus 258 l~~~~ 262 (771)
++...
T Consensus 103 l~v~~ 107 (346)
T d1jmxb_ 103 VYATV 107 (346)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=7.1e-07 Score=89.57 Aligned_cols=59 Identities=7% Similarity=-0.088 Sum_probs=38.4
Q ss_pred CCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeC
Q 004141 392 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 453 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~ 453 (771)
..++|+|+++.| ++...++...+| |+.+++...-...........++++++.+++..++
T Consensus 255 ~~l~~sp~~~~l-asg~~Dg~v~vW--D~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 255 NSIEFSPRHKFL-YTAGSDGIISCW--NLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp EEEEECTTTCCE-EEEETTSCEEEE--ETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred eeEEecCCccEE-EEECCCCEEEEE--ECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 357899999855 555556655554 88887654433322234567889999987766553
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.70 E-value=1.8e-05 Score=69.65 Aligned_cols=291 Identities=10% Similarity=0.133 Sum_probs=171.0
Q ss_pred HHHHHHHHHhhcCccccceEEEecCCCCcceEEEEE-eechhhcccceeEEEEEEeecCCCCccceeecCCccccccceE
Q 004141 25 ASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI-SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA 103 (771)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~ 103 (771)
.++++.++++..+|-..---.. ++..+.|.. ++ ..-+++. + .+++.++||..|.. ....
T Consensus 2 seivk~lE~lv~ip~Y~v~Gkl-----~~d~ll~~~~se-------G~vni~~--l--~g~~~vkLtkePI~----~~~~ 61 (313)
T d2hu7a1 2 SRIVRDVERLIAVEKYSLQGVV-----DGDKLLVVGFSE-------GSVNAYL--Y--DGGETVKLNREPIN----SVLD 61 (313)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEE-----TTTEEEEEEEET-------TEEEEEE--E--SSSSCEECCSSCCS----EECE
T ss_pred hhHHHHHHHHhcccceeEEEEe-----cCCcEEEEEecc-------ceEEEEE--E--eCCEEEEEeccccc----CcCC
Confidence 4677888899888876533222 455455543 32 2234444 3 45577888888722 2223
Q ss_pred EEeCCCCCeEEEEecCCCCC--CeEEEEecC--CcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 104 VVPSPSGSKLLVVRNPENES--PIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
| -+.=.++.|+++...+. ..++..... |+..++ ..+..+ .-.+-.-|++.++|+....
T Consensus 62 P--k~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i-~spk~v----------RI~S~~yddk~vvF~Gase----- 123 (313)
T d2hu7a1 62 P--HYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL-EAVKPM----------RILSGVDTGEAVVFTGATE----- 123 (313)
T ss_dssp E--CTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC-TTSCSB----------EEEEEEECSSCEEEEEECS-----
T ss_pred C--ccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe-cCCceE----------EEEEeeecCceEEEecccC-----
Confidence 3 34445899999886433 346666632 433222 222222 3556667899999975322
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....||+ +++|+.+.|...| ..++.---.|+. |+
T Consensus 124 ------------------------------------d~~~LYv--iegGklrkL~~vP----pFsFVtDI~~d~----I~ 157 (313)
T d2hu7a1 124 ------------------------------------DRVALYA--LDGGGLRELARLP----GFGFVSDIRGDL----IA 157 (313)
T ss_dssp ------------------------------------SCEEEEE--EETTEEEEEEEES----SCEEEEEEETTE----EE
T ss_pred ------------------------------------CceEEEE--EeCCceeeeccCC----CcceEEeccCCe----EE
Confidence 1245555 5588888883112 222332234565 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 339 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~ 339 (771)
-.+.-.+ ++..+|+.|+ .+|..+.++...++..++..+|+.|-+ ...+..
T Consensus 158 G~g~~~g-----------~~~sfF~adl-----------------~SG~lri~tpkeGS~~~ay~~~gnKV~--sdyEt~ 207 (313)
T d2hu7a1 158 GLGFFGG-----------GRVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVT--AGLETA 207 (313)
T ss_dssp EEEEEET-----------TEEEEEEEET-----------------TTEEEEEECCSSEEEEEEEECTTSCEE--EEEEES
T ss_pred EEeeecC-----------CcceEEEEec-----------------ccCCEEEecCCCCcccceeEccCceee--eccCCC
Confidence 5553222 2236999998 789999999999999999999987752 222221
Q ss_pred CCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcc--cccCCCCCCc---cccCCCEEEEEeeeCCeeE
Q 004141 340 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG--LYSSSILSNP---WLSDGCTMLLSSIWGSSQV 414 (771)
Q Consensus 340 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g--~~~~~~~~~~---~s~Dg~~l~~~~~~~~~~~ 414 (771)
| ...+..+|+..+....+ .||+ +|.-...... +.||++ |++.+..++...
T Consensus 208 ---g----Esywit~D~~s~~yerv-----------------e~P~kd~~sy~p~~I~~~~Y~Pdd~-L~iiakrdG~s~ 262 (313)
T d2hu7a1 208 ---R----EARLVTVDPRDGSVEDL-----------------ELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRSA 262 (313)
T ss_dssp ---S----CEEEEEECTTTCCEEEC-----------------CCSSCHHHHHCCSEEEEEEECTTSC-EEEEEEETTEEE
T ss_pred ---C----ceEEEEEecccCceeee-----------------ecCcccceeecceEEEeeeeCCCCc-EEEEEecCCchh
Confidence 1 23344668776654322 2232 1111122233 579998 545556788888
Q ss_pred EEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEE
Q 004141 415 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKY 462 (771)
Q Consensus 415 l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~ 462 (771)
||. .|+. +....+ .......-++.++++.++..+|+.+.-
T Consensus 263 lF~----nGk~--in~p~G--~~~gat~i~~~iyfshsSL~tP~kI~~ 302 (313)
T d2hu7a1 263 VFI----DGER--VEAPQG--NHGRVVLWRGKLVTSHTSLSTPPRIVS 302 (313)
T ss_dssp EEE----TTEE--ECCCSS--EEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred eee----cceE--ecCCCC--cccceEEECCEEEEeecccCCCceeEE
Confidence 885 4543 444444 223455668899999999999998764
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.70 E-value=7.4e-09 Score=112.43 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=88.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCC-cchHHHHHH-HHCCcEEEEECCCC-CCCCC--hhhhhcCCC
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYRG-SLGFG--EEALQSLPG 590 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~-~~~~~~~~l-a~~G~~Vv~~d~rG-~~~~g--~~~~~~~~~ 590 (771)
.|.+.| -+|.|+.....++.|+||++|||.+..+.. .+......+ ...+.+||.++||- .-||= .+......+
T Consensus 78 EDCL~L--nI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~ 155 (517)
T d1ukca_ 78 EDCLFI--NVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL 155 (517)
T ss_dssp SCCCEE--EEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred CcCCEE--EEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence 345444 578887655567889999999988765443 232222223 35678999999994 11111 111111122
Q ss_pred CccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh----CCCceeEEEecCCcc
Q 004141 591 KVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 651 (771)
Q Consensus 591 ~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~p~~ 651 (771)
+ .-+.|+..|++|+.++ ...|+++|.|+|+|.||..+..++.. ...+|..+|+.++..
T Consensus 156 N---~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 156 N---AGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp T---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred c---hhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 3 3488999999999886 33699999999999999988766543 224899999998854
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.69 E-value=2.2e-06 Score=87.77 Aligned_cols=31 Identities=6% Similarity=-0.273 Sum_probs=23.7
Q ss_pred CCCcccc-CCCEEEEEeeeCCeeEEEEEECCC
Q 004141 392 LSNPWLS-DGCTMLLSSIWGSSQVIISVNVSS 422 (771)
Q Consensus 392 ~~~~~s~-Dg~~l~~~~~~~~~~~l~~~d~~t 422 (771)
..++++| ||++|++.....+...+|.++-++
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 4567887 899888877677778888887554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.66 E-value=4.1e-06 Score=85.79 Aligned_cols=175 Identities=10% Similarity=0.036 Sum_probs=87.0
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCccee-----cCCC
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTES 315 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----lt~~ 315 (771)
.+.++.|+|||++ |+... . ....|++++.+ ..+.... ....
T Consensus 146 h~h~v~~sPdG~~----l~v~d-~-------------g~d~v~~~~~~----------------~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 146 GIHGMVFDPTETY----LYSAD-L-------------TANKLWTHRKL----------------ASGEVELVGSVDAPDP 191 (365)
T ss_dssp CEEEEEECTTSSE----EEEEE-T-------------TTTEEEEEEEC----------------TTSCEEEEEEEECSST
T ss_pred cceEEEECCCCCE----EEEee-C-------------CCCEEEEEEcc----------------CCCceeeccceeecCC
Confidence 4568899999996 65543 2 12257777652 2232221 1222
Q ss_pred CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccc--cCCCCC
Q 004141 316 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY--SSSILS 393 (771)
Q Consensus 316 ~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~--~~~~~~ 393 (771)
....+..+|+|||+.+ |+.++. ..+|.++++++++...+... ...+++........+..+ ......
T Consensus 192 g~gPr~i~f~pdg~~~-yv~~e~---------~~~V~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYL-YALMEA---------GNRICEYVIDPATHMPVYTH--HSFPLIPPGIPDRDPETGKGLYRADV 259 (365)
T ss_dssp TCCEEEEEECTTSSEE-EEEETT---------TTEEEEEEECTTTCCEEEEE--EEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred CCceEEEEECCCCceE-EEeccC---------CCEEEEEEecCCCceEEEEe--eeeccccccccccccccccccCCccc
Confidence 3357788999999965 555443 35688888766544222111 111222111100000000 001124
Q ss_pred CccccCCCEEEEEeeeCCe-----eEEEEEECCCCcEEEec-----CC-CCCceeeEEee-cCCEEEEEEeCCCCCCeEE
Q 004141 394 NPWLSDGCTMLLSSIWGSS-----QVIISVNVSSGELLRIT-----PA-ESNFSWSLLTL-DGDNIIAVSSSPVDVPQVK 461 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~-----~~l~~~d~~tg~~~~l~-----~~-~~~~~~~~~s~-dg~~l~~~~~~~~~p~~l~ 461 (771)
+.++|||++||.+...... ...|.++. .+.+.+.. .. ........+++ +|++|+++... -..|.
T Consensus 260 i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~-~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~---s~~v~ 335 (365)
T d1jofa_ 260 CALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ---EGWLE 335 (365)
T ss_dssp EEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS---SCEEE
T ss_pred eEECCCCCEEEEEcccCCCccceEEEEEEecC-CCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCC---CCeEE
Confidence 6789999988776543322 34455553 34443321 11 11223356777 67877766433 23355
Q ss_pred EEEe
Q 004141 462 YGYF 465 (771)
Q Consensus 462 ~~~~ 465 (771)
++++
T Consensus 336 v~~~ 339 (365)
T d1jofa_ 336 IYRW 339 (365)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.63 E-value=3.9e-06 Score=84.16 Aligned_cols=255 Identities=14% Similarity=0.093 Sum_probs=143.3
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEE-ecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
..|+|.++|+ |.|+ +. ....|+.++ +++...... ...... .+++++|||+.++. ....
T Consensus 43 EG~~~D~~G~-Ly~~-D~--~~g~I~ri~p~g~~~~~~~~~~~~~p----------~gla~~~dG~l~va-~~~~----- 102 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLL-DV--FEGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVC-YLGD----- 102 (319)
T ss_dssp EEEEECTTSC-EEEE-ET--TTCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEE-ECTT-----
T ss_pred EeCEECCCCC-EEEE-EC--CCCEEEEEECCCCeEEEEEeCCCCCe----------eEEEECCCCCEEEE-ecCC-----
Confidence 4699999997 6555 33 234688887 444333322 222222 48899999974432 2110
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeecc-CCCCCCccceEEEecCCCCCccEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~-~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
......++.++..++....+. ...........++.|||+ |
T Consensus 103 ----------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-----l 143 (319)
T d2dg1a1 103 ----------------------------------FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-----F 143 (319)
T ss_dssp ----------------------------------SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----E
T ss_pred ----------------------------------CccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-----e
Confidence 002356777787777765542 112233456789999996 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++....... .+....+|+++. +++..+.+.........++|||||++|++....
T Consensus 144 ~vtd~~~~~--------~~~~g~v~~~~~-----------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 144 YFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp EEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-
T ss_pred eeccccccc--------ccCcceeEEEec-----------------ccceeEEEeeccceeeeeeeccccceEEEeccc-
Confidence 776532211 123346899986 566666665544455678999999998877654
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..+|++++++........... .... . ...+. ....+++.+||+ |+++.. +...|.++
T Consensus 198 ---------~~~I~~~d~~~~g~~~~~~~~-~~~~---~--~~~~~-----~PdGl~vD~~G~-l~Va~~--~~g~V~~~ 254 (319)
T d2dg1a1 198 ---------ANRLHRIALEDDGVTIQPFGA-TIPY---Y--FTGHE-----GPDSCCIDSDDN-LYVAMY--GQGRVLVF 254 (319)
T ss_dssp ---------GTEEEEEEECTTSSSEEEEEE-EEEE---E--CCSSS-----EEEEEEEBTTCC-EEEEEE--TTTEEEEE
T ss_pred ---------CCceEEEEEcCCCceeccccc-eeee---c--cCCcc-----ceeeeeEcCCCC-EEEEEc--CCCEEEEE
Confidence 357999998764431111000 0000 0 00000 122456777887 655443 23468888
Q ss_pred ECCCCcEEEecCCCC------CceeeEEeecCCEEEEEEeCCCCCCe--EEEEE
Q 004141 419 NVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPVDVPQ--VKYGY 464 (771)
Q Consensus 419 d~~tg~~~~l~~~~~------~~~~~~~s~dg~~l~~~~~~~~~p~~--l~~~~ 464 (771)
+.++..+.++..+.. ......|.++++.++.+..+...+.. ||+++
T Consensus 255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~ 308 (319)
T d2dg1a1 255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVN 308 (319)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEE
T ss_pred CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEe
Confidence 975444555543221 22345677777778777765544443 45544
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=98.62 E-value=1.7e-07 Score=91.04 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHH-HHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~~ 613 (771)
...|.+|++||.........|..+++.|.. .+.|+.++++| ++.. .....+++++.+.+ +.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~~-~~~V~al~~pG---~~~~-------e~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALRG-IAPVRAVPQPG---YEEG-------EPLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHTT-TCCEEEECCTT---SSTT-------CCEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---cCCC-------CCCCCCHHHHHHHHHHHHHHh--C
Confidence 356889999973222223467778888754 48999999998 4332 11122355555543 344443 2
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCccchhhhhcCCCCCcchhhhhccCCCCccCCCCCChhh---
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED--- 687 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 687 (771)
...++.|+||||||.+|..+|.+. ...+..+++..+........ ...+ ....................
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~~~p~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~l~a 180 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDA----MNAW--LEELTATLFDRETVRMDDTRLTA 180 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEECSCSSHHHH----HHHH--HHHHHTTCC----CCCCHHHHHH
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECCCCCCCccc----hhhH--HHHHHHHhhccccccCCHHHHHH
Confidence 346799999999999999988754 34577777665432110000 0000 00000000000000001111
Q ss_pred HHHHhhcCcccccCCCCCcEEEEeeCCCCccCcHHHHHHHHHHHhCCCCEEEEEeCCCCccCCCCCChHHHHHHHHHHHH
Q 004141 688 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQYARALREKGVETKVIVFPNDVHGIERPQSDFESFLNIGLWFK 767 (771)
Q Consensus 688 ~~~~~~~sp~~~~~~i~~P~lii~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~~H~~~~~~~~~~~~~~i~~fl~ 767 (771)
...+.+.-.......+.+|++++.+++|....... .+. ......++++.+++ +|.....+........|.+||.
T Consensus 181 ~~~~~~~~~~~~~~~~~~p~l~v~a~~~~~~~~~~--~w~---~~~~~~~~~~~v~G-~H~~ml~~~~~~~A~~i~~~L~ 254 (255)
T d1mo2a_ 181 LGAYDRLTGQWRPRETGLPTLLVSAGEPMGPWPDD--SWK---PTWPFEHDTVAVPG-DHFTMVQEHADAIARHIDAWLG 254 (255)
T ss_dssp HHHHHHHHHHCCCCCCCCCEEEEECCSSSSCCTTC--CCC---CCCCSSCEEEECCS-CCSSCSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCccccceEEEeecCCCCCcchhh--HHH---HhCCCCcEEEEECC-CCcccccccHHHHHHHHHHHhC
Confidence 11111111112235678999999998876543321 111 11234578889986 7763333455566677777874
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.59 E-value=1e-08 Score=112.98 Aligned_cols=131 Identities=19% Similarity=0.176 Sum_probs=85.7
Q ss_pred CCCceEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCCCc-------chHHHHHHH-HCCcEEEEECCCC-CCCCChhhh
Q 004141 516 GAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLS-SVGYSLLIVNYRG-SLGFGEEAL 585 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~-~~~~~~p~vv~~HGg~~~~~~~~-------~~~~~~~la-~~G~~Vv~~d~rG-~~~~g~~~~ 585 (771)
.|.+-| -+|.|... ...++.|+|||+|||++..+... +......|+ ..+.+||.++||- .-||-....
T Consensus 78 EDCL~L--NI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~~ 155 (579)
T d2bcea_ 78 EDCLYL--NIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTGD 155 (579)
T ss_dssp SCCCEE--EEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCSS
T ss_pred CcCCEE--EEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccccccccccc
Confidence 355444 57788643 23467999999999876433221 111123343 4569999999993 111111111
Q ss_pred hcCCCCccccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 004141 586 QSLPGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 586 ~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~ 651 (771)
...+++ .-+.|.+.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 156 ~~~~gN---~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 156 SNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp TTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred cCCCcc---chhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 122333 3489999999999886 33699999999999999999877653 246899999998753
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.56 E-value=4.6e-08 Score=107.48 Aligned_cols=117 Identities=18% Similarity=0.174 Sum_probs=79.2
Q ss_pred CCCCCcEEEEEcCCCCCCCCCc-chHHHHHHH-HCCcEEEEECCCCC-CCCC-------hhhhhcCCCCccccchhhHHH
Q 004141 533 DCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLS-SVGYSLLIVNYRGS-LGFG-------EEALQSLPGKVGSQDVNDVLT 602 (771)
Q Consensus 533 ~~~~~p~vv~~HGg~~~~~~~~-~~~~~~~la-~~G~~Vv~~d~rG~-~~~g-------~~~~~~~~~~~~~~~~~D~~~ 602 (771)
..++.|+|||+|||++..+... .......|+ +...+||.++||-. -||- ........++ .-+.|.+.
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN---~Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGN---VGLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSC---HHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCc---ccchHHHH
Confidence 4578899999999887543332 112223443 44699999999932 1111 1111122233 34899999
Q ss_pred HHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCccc
Q 004141 603 AIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 652 (771)
Q Consensus 603 ~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~~ 652 (771)
|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 99999886 236999999999999999998776542 357899998877543
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.55 E-value=3.4e-08 Score=107.96 Aligned_cols=128 Identities=20% Similarity=0.155 Sum_probs=85.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCc--chHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCccccch
Q 004141 521 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS--YSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDV 597 (771)
Q Consensus 521 l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~--~~~~~~~la~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~~~~~~~ 597 (771)
|..-+|.|.. ...++.|+||++|||++..+... ........+..+.+||.++||- .-|+-... ......+..-+
T Consensus 97 L~LnI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~~~--~~~~~~gN~Gl 173 (542)
T d2ha2a1 97 LYLNVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALP--GSREAPGNVGL 173 (542)
T ss_dssp CEEEEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCSSCCSCHHH
T ss_pred CEEEEEecCC-CCCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccceeeeccc--ccccCCCcCCc
Confidence 4445777864 24578899999999876543321 1112233456799999999993 11111100 01112233348
Q ss_pred hhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 598 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 598 ~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 174 ~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 174 LDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp HHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred ccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 8999999999875 336999999999999999999877642 25899999888743
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.54 E-value=3.5e-08 Score=107.55 Aligned_cols=130 Identities=20% Similarity=0.133 Sum_probs=87.7
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc--hHHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY--SKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~--~~~~~~la~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~~ 592 (771)
.|.+.| -++.|.. ..++.|+|||+|||++..+.... ......+++.+.+||.++||- .-||-... ......
T Consensus 89 EDCL~L--nI~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~~--~~~~~~ 162 (532)
T d1ea5a_ 89 EDCLYL--NIWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALH--GSQEAP 162 (532)
T ss_dssp SCCCEE--EEEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCT--TCSSSC
T ss_pred ccCCEE--EEEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeeccccccccccc--cccCCC
Confidence 355445 5778874 45678999999998765433221 122334567899999999993 11111100 001122
Q ss_pred cccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhhC--CCceeEEEecCCcc
Q 004141 593 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 651 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~~--p~~~~~~v~~~p~~ 651 (771)
+..-+.|+..|++|+.++ ..-|+++|.|+|+|.||..+.+++... ..+|..+|+.++..
T Consensus 163 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 163 GNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred CcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 333489999999999886 336999999999999999988877631 25799999887654
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.53 E-value=7.8e-06 Score=82.24 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=97.9
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....+.+||+.+++..... ...........|+|+++. ++..+ .+..|.++|+
T Consensus 175 ~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~---------------~d~~i~i~d~---- 230 (355)
T d1nexb2 175 VSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------MDTTIRIWDL---- 230 (355)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEET----
T ss_pred eeecccceeeeeecccccceeee-ecccccccccccccccee----eeccc---------------ccceEEeeec----
Confidence 34445578999999888765542 233445678899999997 76655 2346888887
Q ss_pred chhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 292 SEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.++. ...+..+...+....|+ ++.|+..+.+ ..|.+||+.+.... +...
T Consensus 231 -------------~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~~--- 280 (355)
T d1nexb2 231 -------------ENGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRK-FSYH--- 280 (355)
T ss_dssp -------------TTCCEEEEECCCSSCCCEEEEC--SSEEEEECTT-----------SEEEEEETTTCCEE-EEEE---
T ss_pred -------------cccccccccccccccccccccc--cceeeeeecc-----------ccccccccccccee-cccc---
Confidence 4443 45555566667777775 4677665544 25888888764321 1000
Q ss_pred EEecccccCCCCCcccccCCCCC-CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEe-cC-CCCCceeeEEeecCCEE
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TP-AESNFSWSLLTLDGDNI 447 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~-~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l-~~-~~~~~~~~~~s~dg~~l 447 (771)
...... ..++++++ ++++.. ++ .|..+|+.+|+.... .. ....+....| +++.+
T Consensus 281 -----------------~~~~~~~~~~~~~~~-~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~~--~~~~~ 337 (355)
T d1nexb2 281 -----------------HTNLSAITTFYVSDN-ILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNF--KGKTL 337 (355)
T ss_dssp -----------------CTTCCCCCEEEECSS-EEEEEE-TT--EEEEEETTTCCBCCSCTTTTCSEEEEEEE--ETTEE
T ss_pred -----------------cCCceEEEEEcCCCC-EEEEEe-CC--EEEEEECCCCCEEEEEecCCCCCEEEEEE--cCCeE
Confidence 011222 34677776 444443 44 466668988886532 22 2222222334 44566
Q ss_pred EEEEeCCCCCCeEEEEE
Q 004141 448 IAVSSSPVDVPQVKYGY 464 (771)
Q Consensus 448 ~~~~~~~~~p~~l~~~~ 464 (771)
+++.+. +..-.|++.+
T Consensus 338 ~~~~s~-dg~~~l~~~d 353 (355)
T d1nexb2 338 VAAVEK-DGQSFLEILD 353 (355)
T ss_dssp EEEEES-SSCEEEEEEE
T ss_pred EEEEEC-CCcEEEEEEe
Confidence 554443 3333344444
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=1e-07 Score=79.63 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=64.0
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCCcEEEEECCCCCCCCChhhhhcCCCCcccc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 595 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~ 595 (771)
-+|.+++.... +..|.||++||.+.. |. ..| ..+|.|+++|+|| ||.+.. + ..
T Consensus 8 ~~G~~l~y~~~--------G~G~pvlllHG~~~~-----w~---~~L-~~~yrvi~~DlpG---~G~S~~---p----~~ 60 (122)
T d2dsta1 8 LYGLNLVFDRV--------GKGPPVLLVAEEASR-----WP---EAL-PEGYAFYLLDLPG---YGRTEG---P----RM 60 (122)
T ss_dssp ETTEEEEEEEE--------CCSSEEEEESSSGGG-----CC---SCC-CTTSEEEEECCTT---STTCCC---C----CC
T ss_pred ECCEEEEEEEE--------cCCCcEEEEeccccc-----cc---ccc-cCCeEEEEEeccc---cCCCCC---c----cc
Confidence 35667765443 234779999994322 21 123 5799999999999 555421 1 22
Q ss_pred chhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCCC
Q 004141 596 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 639 (771)
Q Consensus 596 ~~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~ 639 (771)
..+++.+.+..+++. ++.++..|+||||||.+++.+++..+.
T Consensus 61 s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 61 APEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhccc
Confidence 356666666666665 345789999999999999999987554
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=5.8e-08 Score=105.59 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=86.2
Q ss_pred CCCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcc-h-HHHHHHHHCCcEEEEECCCC-CCCCChhhhhcCCCCc
Q 004141 516 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-S-KSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKV 592 (771)
Q Consensus 516 ~~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~-~-~~~~~la~~G~~Vv~~d~rG-~~~~g~~~~~~~~~~~ 592 (771)
.|.+.| -+|.|.. ..++.|+||++|||++..+.... . ......++.+.+||.++||- .-|+-... ......
T Consensus 87 EDCL~l--nI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~--~~~~~~ 160 (526)
T d1p0ia_ 87 EDCLYL--NVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALP--GNPEAP 160 (526)
T ss_dssp SCCCEE--EEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCT--TCTTSC
T ss_pred CcCCEE--EEEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCCC--Cccccc
Confidence 345444 5778874 45678999999998876543322 1 12223356799999999993 11111000 001112
Q ss_pred cccchhhHHHHHHHHHHc---CCCCCCeEEEEEcChhHHHHHHHHhh--CCCceeEEEecCCcc
Q 004141 593 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 651 (771)
Q Consensus 593 ~~~~~~D~~~~i~~l~~~---~~~d~~ri~l~G~S~GG~~a~~~a~~--~p~~~~~~v~~~p~~ 651 (771)
+..-+.|++.|++|+.++ ..-|+++|.|+|+|.||..+..++.. ...+|..+|+.++..
T Consensus 161 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 161 GNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 333489999999999875 33699999999999999999777653 234788888877653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.44 E-value=3.5e-05 Score=76.24 Aligned_cols=227 Identities=13% Similarity=0.128 Sum_probs=122.8
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 180 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~ 180 (771)
...++++|||+ |++ .+. ...+|+.+..++....+....... .+++|+|||+ |+.....
T Consensus 30 ~e~iAv~pdG~-l~v-t~~--~~~~I~~i~p~g~~~~~~~~~~~~----------~gla~~~dG~-l~v~~~~------- 87 (302)
T d2p4oa1 30 LENLASAPDGT-IFV-TNH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-LVATGWN------- 87 (302)
T ss_dssp EEEEEECTTSC-EEE-EET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-EEEEEEC-------
T ss_pred cCCEEECCCCC-EEE-EeC--CCCEEEEEeCCCCEEEEEcCCCCc----------ceEEEcCCCC-eEEEecC-------
Confidence 45789999998 433 333 235788888666656555555444 5899999998 3333211
Q ss_pred ccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEcc--CCceeeccCCCCCCccceEEEecCCCCCccEE
Q 004141 181 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l 258 (771)
...+++++.. .+....+...+........++.+||+ +
T Consensus 88 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-----~ 126 (302)
T d2p4oa1 88 ------------------------------------ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-----Y 126 (302)
T ss_dssp ------------------------------------TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-----E
T ss_pred ------------------------------------CceEEEEEecccccceeeccccCCccccceeEEccCCC-----E
Confidence 1234444443 33444442133334456788889885 4
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec---------CCCCccccceeecCCCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL---------TESISSAFFPRFSPDGK 329 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l---------t~~~~~~~~p~~SpDG~ 329 (771)
++.. . ....+|.++. .++..... .........-.+++|+.
T Consensus 127 ~v~~-~-------------~~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~ 175 (302)
T d2p4oa1 127 LTAD-S-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN 175 (302)
T ss_dssp EEEE-T-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT
T ss_pred Eeec-c-------------ccccceeeec-----------------cCCcceeEecCCccceeeccCcccccccccccCC
Confidence 4432 1 2236777765 33221110 00111111123455678
Q ss_pred EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee
Q 004141 330 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 330 ~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~ 409 (771)
.|++..... .+|++++............ .. .. .....+++.+||+ |+++...
T Consensus 176 ~l~~~~~~~----------~~i~~~~~~~~~~~~~~~~---~~-------~~-------~~pdgia~d~dG~-l~va~~~ 227 (302)
T d2p4oa1 176 FLYVSNTEK----------MLLLRIPVDSTDKPGEPEI---FV-------EQ-------TNIDDFAFDVEGN-LYGATHI 227 (302)
T ss_dssp EEEEEETTT----------TEEEEEEBCTTSCBCCCEE---EE-------ES-------CCCSSEEEBTTCC-EEEECBT
T ss_pred ceeeecCCC----------CeEEecccccccccccccc---cc-------CC-------CCCcceEECCCCC-EEEEEcC
Confidence 887766543 5789998776543211000 00 01 1245788999997 6665543
Q ss_pred CCeeEEEEEECCCCcEEEecC-C--CCCceeeEE---eecCCEEEEEEe
Q 004141 410 GSSQVIISVNVSSGELLRITP-A--ESNFSWSLL---TLDGDNIIAVSS 452 (771)
Q Consensus 410 ~~~~~l~~~d~~tg~~~~l~~-~--~~~~~~~~~---s~dg~~l~~~~~ 452 (771)
. ..|++++.+ |+...+.. . ........| ++|++.||++.+
T Consensus 228 ~--~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~ 273 (302)
T d2p4oa1 228 Y--NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 273 (302)
T ss_dssp T--CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred C--CcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence 3 358888875 55544432 2 122344567 567888887654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.42 E-value=3e-05 Score=76.43 Aligned_cols=238 Identities=14% Similarity=0.110 Sum_probs=138.4
Q ss_pred eEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCc
Q 004141 102 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 181 (771)
Q Consensus 102 ~~~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 181 (771)
..|.|.+....|.|+-- ....|+.++..+....+..++... .++.+.+||+.++- .
T Consensus 21 Egp~wd~~~~~l~wvDi---~~~~I~r~d~~~g~~~~~~~~~~~----------~~i~~~~dg~l~va-~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI---LERELHELHLASGRKTVHALPFMG----------SALAKISDSKQLIA-S---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEG---GGTEEEEEETTTTEEEEEECSSCE----------EEEEEEETTEEEEE-E----------
T ss_pred eCCeEECCCCEEEEEEC---CCCEEEEEECCCCeEEEEECCCCc----------EEEEEecCCCEEEE-E----------
Confidence 46999998888988743 234588888434444555655444 57888899865543 1
Q ss_pred cCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCC---CccceEEEecCCCCCccEE
Q 004141 182 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS---LSVGQVVWAPLNEGLHQYL 258 (771)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~---~~~~~~~wspDg~~~~~~l 258 (771)
...|+++|.++++.+.+...... .........|+|+ |
T Consensus 77 -----------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-----i 116 (295)
T d2ghsa1 77 -----------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-----L 116 (295)
T ss_dssp -----------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-----E
T ss_pred -----------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-----E
Confidence 14689999999998877322221 2456778899997 7
Q ss_pred EEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCC
Q 004141 259 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 259 ~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
+|....... ......+|.++ .++.+.+.........+.||||++.+++.....
T Consensus 117 w~~~~~~~~--------~~~~g~l~~~~-------------------~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 117 WIGTMGRKA--------ETGAGSIYHVA-------------------KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EEEEEETTC--------CTTCEEEEEEE-------------------TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EEEeccccc--------cccceeEeeec-------------------CCcEEEEeeccCCcceeeecCCCceEEEeeccc
Confidence 776643221 11223556554 244555544444456789999999998887653
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|++++++......... ...... ...... .....+.-.+|. |++..- . ...|+++
T Consensus 170 ----------~~I~~~~~d~~~~~~~~~-~~~~~~---~~~~~g-------~pdG~~vD~~Gn-lWva~~-~-~g~V~~~ 225 (295)
T d2ghsa1 170 ----------NRLMRVPLDARTGLPTGK-AEVFID---STGIKG-------GMDGSVCDAEGH-IWNARW-G-EGAVDRY 225 (295)
T ss_dssp ----------CEEEEEEBCTTTCCBSSC-CEEEEE---CTTSSS-------EEEEEEECTTSC-EEEEEE-T-TTEEEEE
T ss_pred ----------ceeeEeeecccccccccc-eEEEec---cCcccc-------cccceEEcCCCC-EEeeee-C-CCceEEe
Confidence 468888876433221111 100111 000011 122445666776 544332 2 2368888
Q ss_pred ECCCCcEEEecCCCCCceeeEEe-ecCCEEEEEEeCC
Q 004141 419 NVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSP 454 (771)
Q Consensus 419 d~~tg~~~~l~~~~~~~~~~~~s-~dg~~l~~~~~~~ 454 (771)
|.++..+..+..+........|- +|.+.||++..+.
T Consensus 226 dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 226 DTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp CTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred cCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 98666666665544334445564 5777887776543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.38 E-value=3.1e-05 Score=80.99 Aligned_cols=230 Identities=11% Similarity=0.127 Sum_probs=130.7
Q ss_pred cceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC
Q 004141 156 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 235 (771)
Q Consensus 156 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~ 235 (771)
.+.++||||++|||..... |.....|+++|+++|+....
T Consensus 128 ~~~~~Spd~~~la~s~d~~---------------------------------------G~e~~~l~v~Dl~tg~~~~~-- 166 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSAS---------------------------------------GSDWVTIKFMKVDGAKELPD-- 166 (430)
T ss_dssp EEEEECTTSSEEEEEEEET---------------------------------------TCSCEEEEEEETTTTEEEEE--
T ss_pred cceEecCCCCEEEEEeccc---------------------------------------cCchheeEEeccCcceeccc--
Confidence 4678999999999986544 22457999999999986544
Q ss_pred CCCCCccceEEEecCCCCCccEEEEEeecCcc-eeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc--ceec
Q 004141 236 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET-RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNL 312 (771)
Q Consensus 236 ~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~l 312 (771)
.-.....+.++|++|++. |+|+...... ...+..-..+++..+|+..+ .+.. -+.+
T Consensus 167 ~i~~~~~~~~~W~~D~~~----~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~l-----------------gt~~~~d~~v 225 (430)
T d1qfma1 167 VLERVKFSCMAWTHDGKG----MFYNAYPQQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILC 225 (430)
T ss_dssp EEEEECSCCEEECTTSSE----EEEEECCCCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEE
T ss_pred ccccccccceEEcCCCCE----EEEEEeccccCcccccccccCCcceEEEEEC-----------------CCCccccccc
Confidence 111223467899999998 9998754321 11112223456678999998 3322 2223
Q ss_pred CCC---CccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccC
Q 004141 313 TES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 389 (771)
Q Consensus 313 t~~---~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~ 389 (771)
... .........|+||++|+....... .....+|..|+............ ...++.. .
T Consensus 226 ~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~-----~------ 286 (430)
T d1qfma1 226 AEFPDEPKWMGGAELSDDGRYVLLSIREGC------DPVNRLWYCDLQQESNGITGILK--WVKLIDN-----F------ 286 (430)
T ss_dssp ECCTTCTTCEEEEEECTTSCEEEEEEECSS------SSCCEEEEEEGGGSSSSSCSSCC--CEEEECS-----S------
T ss_pred cccccCCceEEeeeccCCcceeeEEeeccC------CccEEEEEeeCCCcccccccccc--eeEeecc-----c------
Confidence 222 122445678999999877665431 22456888887653321110000 0011100 0
Q ss_pred CCCCCc-cccCCCEEEEEeeeCC-eeEEEEEECCCCc---EEEecCC-CCCceeeEEeecCCEEEEEEeCCCCCCeEEEE
Q 004141 390 SILSNP-WLSDGCTMLLSSIWGS-SQVIISVNVSSGE---LLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 463 (771)
Q Consensus 390 ~~~~~~-~s~Dg~~l~~~~~~~~-~~~l~~~d~~tg~---~~~l~~~-~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~ 463 (771)
..... ...+|..+++.++.+. ...|+.++++... .+.+... ........++..++.|++.... +.-++|.+.
T Consensus 287 -~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~-~~~~~l~v~ 364 (430)
T d1qfma1 287 -EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH-DVKNTLQLH 364 (430)
T ss_dssp -SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE-TTEEEEEEE
T ss_pred -ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEc-CCEeEEEEE
Confidence 00111 1235556777666443 4679999887643 3444433 3333334566667777766543 455668887
Q ss_pred Eeccc
Q 004141 464 YFVDK 468 (771)
Q Consensus 464 ~~~~~ 468 (771)
++.++
T Consensus 365 ~~~~~ 369 (430)
T d1qfma1 365 DLATG 369 (430)
T ss_dssp ETTTC
T ss_pred ECCCC
Confidence 76544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=1.4e-05 Score=82.67 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=87.5
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-------eecC
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-------VNLT 313 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~lt 313 (771)
.+..++||||| . |+..+ .+..|.++|+ .+++. ..+.
T Consensus 186 ~~~~v~~s~dg-~----lasgs---------------~Dg~i~iwd~-----------------~~~~~~~~~~~~~~l~ 228 (393)
T d1sq9a_ 186 FATSVDISERG-L----IATGF---------------NNGTVQISEL-----------------STLRPLYNFESQHSMI 228 (393)
T ss_dssp CCCEEEECTTS-E----EEEEC---------------TTSEEEEEET-----------------TTTEEEEEEECCC---
T ss_pred cEEEEEECCCC-E----EEEEe---------------CCCcEEEEee-----------------cccccccccccccccc
Confidence 35678999997 3 65433 3346888887 44432 2234
Q ss_pred CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCC
Q 004141 314 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 393 (771)
Q Consensus 314 ~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~ 393 (771)
.+...+.+.+|||||+.|+..+.+.. ...|.+||+.++............... ...+.| +...+..
T Consensus 229 ~h~~~V~~l~~spdg~~l~sgs~D~t--------~~~i~lwd~~~g~~~~~l~~~~~~~~~-----~~~~~g-H~~~V~~ 294 (393)
T d1sq9a_ 229 NNSNSIRSVKFSPQGSLLAIAHDSNS--------FGCITLYETEFGERIGSLSVPTHSSQA-----SLGEFA-HSSWVMS 294 (393)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETT--------EEEEEEEETTTCCEEEEECBC-------------CCBS-BSSCEEE
T ss_pred cccceEEEcccccccceeeeecCCCC--------cceeeecccccceeeeeeccccccccc-----eeeeec-ccCceee
Confidence 45667899999999999988776641 245778898887643211110000000 001111 2223567
Q ss_pred CccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCc----eeeEEeecCCEE
Q 004141 394 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNF----SWSLLTLDGDNI 447 (771)
Q Consensus 394 ~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~----~~~~~s~dg~~l 447 (771)
++|+|||+.| ++...++...|| |+++|+........ ..+ ....++++++.+
T Consensus 295 l~fspd~~~l-~S~s~D~~v~vW--d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 295 LSFNDSGETL-CSAGWDGKLRFW--DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp EEECSSSSEE-EEEETTSEEEEE--ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eccCCCCCee-EEECCCCEEEEE--ECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 8999999854 666666666666 88888766543322 211 124577777654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.32 E-value=2e-05 Score=78.47 Aligned_cols=267 Identities=12% Similarity=0.049 Sum_probs=140.5
Q ss_pred cceEEEeCCCCCeEEEEecCCC----CCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPEN----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 175 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~ 175 (771)
....|+|.|||+ |+|+..... ...+++.++..+.....+..+.... ..+.-.++.|+|||..|+.. ..
T Consensus 19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~----~~g~P~Gl~~~~dg~~l~va-d~-- 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG----YGGIPAGCQCDRDANQLFVA-DM-- 90 (314)
T ss_dssp TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT----EECCEEEEEECSSSSEEEEE-ET--
T ss_pred CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc----CCCcceeEEEeCCCCEEEEE-EC--
Confidence 356799999997 545543321 1235777773333333333211100 00111478999999866553 21
Q ss_pred CCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCC---ccceEEEecCCC
Q 004141 176 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL---SVGQVVWAPLNE 252 (771)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~---~~~~~~wspDg~ 252 (771)
...|++++.+++....+....... ....+++.|||.
T Consensus 91 -----------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~ 129 (314)
T d1pjxa_ 91 -----------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN 129 (314)
T ss_dssp -----------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC
T ss_pred -----------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC
Confidence 245888898877655442111111 346789999996
Q ss_pred CCccEEEEEeecCccee-eeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecCCCCccccceeecCCCC--
Q 004141 253 GLHQYLVFVGWSSETRK-LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-- 329 (771)
Q Consensus 253 ~~~~~l~~~~~~~~~~~-~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~-- 329 (771)
|+|+........ ............||+++. + ++...+...........|+||++
T Consensus 130 -----lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----------------d-g~~~~~~~~~~~pNGi~~~~d~d~~ 186 (314)
T d1pjxa_ 130 -----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----------------D-GQMIQVDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp -----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----------------T-SCEEEEEEEESSEEEEEEEECTTSC
T ss_pred -----EEEecCccCcccccccceeccCCceEEEEee-----------------c-CceeEeeCCcceeeeeEECCCCCcc
Confidence 777642211000 000000123347888885 3 33444433333345678999875
Q ss_pred --EEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEe
Q 004141 330 --FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 407 (771)
Q Consensus 330 --~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~ 407 (771)
+|++.... ..+|+++|+...... . ...+... +++.....+..+++-++|+ |+++.
T Consensus 187 ~~~lyv~d~~----------~~~i~~~d~~~~g~~--~--~~~~~~~--------~~~~~~~~pdGiavD~~Gn-lyVa~ 243 (314)
T d1pjxa_ 187 PYQLIVAETP----------TKKLWSYDIKGPAKI--E--NKKVWGH--------IPGTHEGGADGMDFDEDNN-LLVAN 243 (314)
T ss_dssp EEEEEEEETT----------TTEEEEEEEEETTEE--E--EEEEEEE--------CCCCSSCEEEEEEEBTTCC-EEEEE
T ss_pred eeEEEEEeec----------ccceEEeeccCcccc--c--eeeEEEE--------ccccccccceeeEEecCCc-EEEEE
Confidence 45544432 357999887654321 0 0001000 0000000122456777887 55543
Q ss_pred eeCCeeEEEEEECCCCcEE-EecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEec
Q 004141 408 IWGSSQVIISVNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 408 ~~~~~~~l~~~d~~tg~~~-~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
. +...|++++.+++++. .+...........|.+|++.|+++.+. -.+|+++++.
T Consensus 244 ~--~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~~~~ 298 (314)
T d1pjxa_ 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQ 298 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECS
T ss_pred c--CCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEEECC
Confidence 2 3357889999888754 344433344567888899888876643 2468887754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.26 E-value=3.5e-06 Score=86.76 Aligned_cols=196 Identities=8% Similarity=-0.027 Sum_probs=94.8
Q ss_pred EecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCC----
Q 004141 46 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 121 (771)
Q Consensus 46 ~~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 121 (771)
+...++||++|... +. ....+.++++. ..+..++..-+. .......++||||+++.+....+.
T Consensus 76 ~t~gtpDGr~lfV~-d~-------~~~rVavIDl~--t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 76 MTDGRYDGKYLFIN-DK-------ANTRVARIRLD--IMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp EETTEEEEEEEEEE-ET-------TTTEEEEEETT--TTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred eecccCCCCEEEEE-cC-------CCCEEEEEECC--CCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccc
Confidence 33446799887554 32 23467776653 334444333221 134667899999998755433211
Q ss_pred ----------CCCeEEE-Ee-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCC
Q 004141 122 ----------ESPIQFE-LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 189 (771)
Q Consensus 122 ----------~~~~~~~-~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 189 (771)
.....+. ++ ........+.+.... ..+.|||||++++..+....... .+.......
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p----------~~v~~spdGk~a~vt~~nse~~~-~id~~t~~~- 210 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL----------DNTDADYTGKYATSTCYNSERAV-DLAGTMRND- 210 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC----------CCEEECSSSSEEEEEESCTTCCS-SHHHHTCSS-
T ss_pred cCcccccccccccceEEeecCccceeeEEEecCCCc----------cceEECCCCCEEEEEecCCCceE-EEeccCcce-
Confidence 0011222 22 112222222333333 58999999998877654432211 110000000
Q ss_pred CCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCccee
Q 004141 190 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 269 (771)
Q Consensus 190 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~ 269 (771)
........|.....+.+|.+.... .....+.+.+..+.++... ++....+..+..||||++ ++....
T Consensus 211 ~d~i~v~n~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~--IPvgksPhGv~vSPDGky----l~~~~~------ 277 (441)
T d1qnia2 211 RDWVVVFNVERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRY--IPVPKNPHGLNTSPDGKY----FIANGK------ 277 (441)
T ss_dssp BCEEEEEEHHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEE--ECCBSSCCCEEECTTSCE----EEEECT------
T ss_pred EEEEEeCCccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEE--EeCCCCccCceECCCCCE----EEEeCC------
Confidence 000001111122234455332222 2234445555555555444 455556778999999996 665542
Q ss_pred eeeeeeccCCceeEEEec
Q 004141 270 LGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 270 ~g~~~~~~~~~~l~~~d~ 287 (771)
....+-++|+
T Consensus 278 --------~~~tvsv~d~ 287 (441)
T d1qnia2 278 --------LSPTVSVIAI 287 (441)
T ss_dssp --------TSSBEEEEEG
T ss_pred --------cCCcEEEEEe
Confidence 2236888887
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=3.4e-05 Score=75.35 Aligned_cols=143 Identities=10% Similarity=0.002 Sum_probs=77.7
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+.+|++...+.......+....+..++|||||+. |+..+ .+..|.++|+
T Consensus 141 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~g~---------------~dg~i~i~d~---------- 191 (287)
T d1pgua2 141 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY----IAAGD---------------VMGKILLYDL---------- 191 (287)
T ss_dssp SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET----------
T ss_pred ceeeeeeccccceeeeeeeccCCceeEEEeccCccc----ccccc---------------ccccccceee----------
Confidence 357788876554333211334446788999999997 76654 2336888887
Q ss_pred hhhcCCCCCCcc--eecCCCCccccceeecCCCCEEEEEecCCCCC-CCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 298 ELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAKSSVD-SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 298 ~~~~~~~~~~~~--~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~-~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
..++. ..+..+...+...+|+|+++.......+.... .| .....|++||+..+... + ..
T Consensus 192 -------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg--s~D~~i~iw~~~~~~~~-~--------~~ 253 (287)
T d1pgua2 192 -------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG--SLDTNIFIYSVKRPMKI-I--------KA 253 (287)
T ss_dssp -------TTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE--ETTSCEEEEESSCTTCC-E--------EE
T ss_pred -------cccccccccccccccccceeeecccccccccccCCCCeeEee--cCCCeEEEEECCCCCeE-E--------EE
Confidence 44432 23444556677888988775433322221100 00 11245888988654321 0 00
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
.. + +...+..+.|+||++ | ++...++...||.|
T Consensus 254 ~~----~-----h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 LN----A-----HKDGVNNLLWETPST-L-VSSGADACIKRWNV 286 (287)
T ss_dssp TT----S-----STTCEEEEEEEETTE-E-EEEETTSCEEEEEE
T ss_pred eC----C-----CCCCeEEEEECCCCE-E-EEEECCCeEEEEEE
Confidence 00 0 112355778999874 4 56666778888864
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.21 E-value=1.4e-06 Score=89.71 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=99.3
Q ss_pred cCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceee---eeeeeccC-CceeEEEeccccc
Q 004141 216 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL---GIKYCYNR-PCALYAVRVSLYK 291 (771)
Q Consensus 216 ~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~---g~~~~~~~-~~~l~~~d~~~~~ 291 (771)
....|.++|+++.++..+..++....+...+++|||++ +++..+....-.+ |.....++ ...+-.+|.
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~---- 163 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA---- 163 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET----
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccCcccccccccccceEEeecC----
Confidence 34789999999998776532455567788999999998 6555432221000 00000001 112234554
Q ss_pred chhhhhhhhcCCCCCCcc-eecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 292 SEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
.+.+. .++. -.+......|||||+++++..... ..+..++..+.....
T Consensus 164 -------------~t~~v~~qI~-v~~~p~~v~~spdGk~a~vt~~ns----------e~~~~id~~t~~~~d------- 212 (441)
T d1qnia2 164 -------------ETMDVAWQVI-VDGNLDNTDADYTGKYATSTCYNS----------ERAVDLAGTMRNDRD------- 212 (441)
T ss_dssp -------------TTCSEEEEEE-ESSCCCCEEECSSSSEEEEEESCT----------TCCSSHHHHTCSSBC-------
T ss_pred -------------ccceeeEEEe-cCCCccceEECCCCCEEEEEecCC----------CceEEEeccCcceEE-------
Confidence 44332 2222 123467899999999887666543 123333433333211
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE-CCCCc-EEEecCCCCCceeeEEeecCCEEE
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN-VSSGE-LLRITPAESNFSWSLLTLDGDNII 448 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d-~~tg~-~~~l~~~~~~~~~~~~s~dg~~l~ 448 (771)
.+.+... .....+++||++++. .+.. ...++ ..+.+ +..|..+.. .....+||||++++
T Consensus 213 ~i~v~n~-------------p~~~~~~~dGk~~~v----~~~~-v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~ 273 (441)
T d1qnia2 213 WVVVFNV-------------ERIAAAVKAGNFKTI----GDSK-VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFI 273 (441)
T ss_dssp EEEEEEH-------------HHHHHHHHTTCCBCC----TTCC-CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEE
T ss_pred EEEeCCc-------------cceEEEecCCCEEEe----CCCC-cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEE
Confidence 1111110 123357889985533 1112 22333 33333 444544433 45578999999887
Q ss_pred EEEeCCCCCCeEEEEEec
Q 004141 449 AVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 449 ~~~~~~~~p~~l~~~~~~ 466 (771)
++. .....+.++++.
T Consensus 274 ~~~---~~~~tvsv~d~~ 288 (441)
T d1qnia2 274 ANG---KLSPTVSVIAID 288 (441)
T ss_dssp EEC---TTSSBEEEEEGG
T ss_pred EeC---CcCCcEEEEEee
Confidence 654 233447777764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.15 E-value=4e-05 Score=76.81 Aligned_cols=271 Identities=7% Similarity=-0.016 Sum_probs=131.1
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCcc
Q 004141 105 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 182 (771)
Q Consensus 105 ~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 182 (771)
.+++||++||..+..+ .+.+|+ .++..+.+.. ..+ .+.+++||||+ .|+..+.+...+ .|.
T Consensus 18 c~~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~~---H~~------~V~~l~~s~~~-~l~s~s~D~~i~--iw~ 80 (355)
T d1nexb2 18 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLSG---HDG------GVWALKYAHGG-ILVSGSTDRTVR--VWD 80 (355)
T ss_dssp EEEEETTEEEEEETTT-----EEEEEETTTTEEEEEEEC---CSS------CEEEEEEETTT-EEEEEETTCCEE--EEE
T ss_pred EEEECCCEEEEEeCCC-----eEEEEECCCCcEEEEEEC---CCC------CEEEEEEcCCC-EEEEEecccccc--ccc
Confidence 4677899888765433 566773 3333333221 111 22689999976 566666554322 222
Q ss_pred CCCCCCCCCCcc--CCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCC----------CCCC----------
Q 004141 183 LGSTKGGSSDKD--CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----------PKSL---------- 240 (771)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~----------~~~~---------- 240 (771)
............ .........+.++....+.+.....|.+||+.++........ ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 111100000000 000001122344433444555667899999877653322100 0000
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~ 319 (771)
...-..+.++++. ++... .+..|..+|+ .+++ ...........
T Consensus 161 ~~~v~~~~~~~~~----~~~~~---------------~d~~i~~~d~-----------------~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 161 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRI 204 (355)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCE
T ss_pred cccccccccccce----eeeec---------------ccceeeeeec-----------------ccccceeeeecccccc
Confidence 0011234445543 33322 3346788887 4443 33444455567
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~D 399 (771)
....|+|+++.++..+.+. .|.++|+.++........ +...+..+.| +
T Consensus 205 ~~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~~-------------------h~~~v~~~~~--~ 252 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQG-------------------HTALVGLLRL--S 252 (355)
T ss_dssp EEEEEETTTTEEEEEETTS-----------CEEEEETTTCCEEEEECC-------------------CSSCCCEEEE--C
T ss_pred ccccccccceeeecccccc-----------eEEeeecccccccccccc-------------------cccccccccc--c
Confidence 7889999999988777553 488888877553211110 0012333444 4
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEeccc
Q 004141 400 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~~ 468 (771)
++.| ++...++. |..+|+.++................++++++. +++.++ ..|.+.++.++
T Consensus 253 ~~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~d----~~i~vwd~~tg 313 (355)
T d1nexb2 253 DKFL-VSAAADGS--IRGWDANDYSRKFSYHHTNLSAITTFYVSDNI-LVSGSE----NQFNIYNLRSG 313 (355)
T ss_dssp SSEE-EEECTTSE--EEEEETTTCCEEEEEECTTCCCCCEEEECSSE-EEEEET----TEEEEEETTTC
T ss_pred ccee-eeeecccc--cccccccccceecccccCCceEEEEEcCCCCE-EEEEeC----CEEEEEECCCC
Confidence 5544 45555555 44558777665433322222233455666654 444442 35777776654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=9.2e-06 Score=84.03 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=87.9
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 178 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~ 178 (771)
....+||||| .||..+.+. .+.+|+ .++............+ -...+.+++|||||+.|+..+.+.
T Consensus 187 ~~~v~~s~dg-~lasgs~Dg-----~i~iwd~~~~~~~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~sgs~D~---- 253 (393)
T d1sq9a_ 187 ATSVDISERG-LIATGFNNG-----TVQISELSTLRPLYNFESQHSMIN---NSNSIRSVKFSPQGSLLAIAHDSN---- 253 (393)
T ss_dssp CCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEEEEEECCC---C---CCCCEEEEEECSSTTEEEEEEEET----
T ss_pred EEEEEECCCC-EEEEEeCCC-----cEEEEeeccccccccccccccccc---ccceEEEcccccccceeeeecCCC----
Confidence 5578999998 555433322 456663 3333333322111100 012336899999999998876543
Q ss_pred CCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccC------------CCCCCccceEE
Q 004141 179 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG------------IPKSLSVGQVV 246 (771)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~------------~~~~~~~~~~~ 246 (771)
....|.+||+++++...... ......+..++
T Consensus 254 -------------------------------------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~ 296 (393)
T d1sq9a_ 254 -------------------------------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296 (393)
T ss_dssp -------------------------------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE
T ss_pred -------------------------------------CcceeeecccccceeeeeeccccccccceeeeecccCceeeec
Confidence 12467888888876543210 01233577899
Q ss_pred EecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc-eecCCCCcc----ccc
Q 004141 247 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISS----AFF 321 (771)
Q Consensus 247 wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~lt~~~~~----~~~ 321 (771)
|||||+. |+-.+ .+..|.++|+ .+++. ..|..+... ...
T Consensus 297 fspd~~~----l~S~s---------------~D~~v~vWd~-----------------~~g~~~~~l~gH~~~v~~~~~~ 340 (393)
T d1sq9a_ 297 FNDSGET----LCSAG---------------WDGKLRFWDV-----------------KTKERITTLNMHCDDIEIEEDI 340 (393)
T ss_dssp ECSSSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECCGGGCSSGGGC
T ss_pred cCCCCCe----eEEEC---------------CCCEEEEEEC-----------------CCCCEEEEECCcCCcccCCccE
Confidence 9999997 76655 3447889998 66654 445555433 346
Q ss_pred eeecCCCCEEE
Q 004141 322 PRFSPDGKFLV 332 (771)
Q Consensus 322 p~~SpDG~~l~ 332 (771)
+.|+|+|+.++
T Consensus 341 ~~~~~~~~~~~ 351 (393)
T d1sq9a_ 341 LAVDEHGDSLA 351 (393)
T ss_dssp CCBCTTSCBCS
T ss_pred EEECCCCCEEE
Confidence 88999998764
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.09 E-value=1.2e-06 Score=86.30 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=70.9
Q ss_pred CCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCCC
Q 004141 535 SCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 613 (771)
Q Consensus 535 ~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 613 (771)
..+|++|++||...+........... +|....+.|+++|++..... .+.... .......+.+...|++|.+...+
T Consensus 68 ~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~--~n~~~Vg~~ia~~i~~l~~~~g~ 143 (337)
T d1rp1a2 68 TDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAA--NNVRVVGAQVAQMLSMLSANYSY 143 (337)
T ss_dssp TTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHH--HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHH--HHHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999765543333333333 44556699999999641110 000000 00001124555667777766568
Q ss_pred CCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 614 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 614 d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
+.++|.|+|||+||++|..+.. +...+..++...|..
T Consensus 144 ~~~~vhlIGhSLGAhvAG~aG~-~~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 144 SPSQVQLIGHSLGAHVAGEAGS-RTPGLGRITGLDPVE 180 (337)
T ss_dssp CGGGEEEEEETHHHHHHHHHHH-TSTTCCEEEEESCCC
T ss_pred ChhheEEEeecHHHhhhHHHHH-hhccccceeccCCCc
Confidence 8999999999999999986655 455678888777764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.06 E-value=0.00012 Score=72.88 Aligned_cols=216 Identities=9% Similarity=0.041 Sum_probs=112.7
Q ss_pred cceEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCC
Q 004141 100 GASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 177 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~ 177 (771)
.....+++|||+.++ +.... .....++.++ .++....+........ ....+.+.|||+ |++.......
T Consensus 83 ~p~gla~~~dG~l~v-a~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~nd~~~d~~G~-l~vtd~~~~~- 152 (319)
T d2dg1a1 83 NPAAIKIHKDGRLFV-CYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY-------CIDDMVFDSKGG-FYFTDFRGYS- 152 (319)
T ss_dssp SEEEEEECTTSCEEE-EECTTSSSCCEEEEECTTSCSCEEEECSSSSCC-------CEEEEEECTTSC-EEEEECCCBT-
T ss_pred CeeEEEECCCCCEEE-EecCCCccceeEEEEcCCCceeeeeccCCCccc-------CCcceeEEeccc-eeeccccccc-
Confidence 356788999997443 32221 1334566666 4444444433211110 124678999996 5554211100
Q ss_pred CCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccE
Q 004141 178 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 257 (771)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~ 257 (771)
......++.++.+++.++.+ ...-.....++|+|||+.
T Consensus 153 ------------------------------------~~~~g~v~~~~~dg~~~~~~--~~~~~~pnGia~s~dg~~---- 190 (319)
T d2dg1a1 153 ------------------------------------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV---- 190 (319)
T ss_dssp ------------------------------------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----
T ss_pred ------------------------------------ccCcceeEEEecccceeEEE--eeccceeeeeeeccccce----
Confidence 01235789999888877766 233234567899999997
Q ss_pred EEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceec-------CCCCccccceeecCCCCE
Q 004141 258 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKF 330 (771)
Q Consensus 258 l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l-------t~~~~~~~~p~~SpDG~~ 330 (771)
|+++.. ....|+.++++. ++...... ..........++.+||+
T Consensus 191 lyvad~--------------~~~~I~~~d~~~---------------~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~- 240 (319)
T d2dg1a1 191 LWVTET--------------TANRLHRIALED---------------DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN- 240 (319)
T ss_dssp EEEEEG--------------GGTEEEEEEECT---------------TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-
T ss_pred EEEecc--------------cCCceEEEEEcC---------------CCceeccccceeeeccCCccceeeeeEcCCCC-
Confidence 766531 223788888731 11111111 11122244567788887
Q ss_pred EEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeee-
Q 004141 331 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 409 (771)
Q Consensus 331 l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~- 409 (771)
|+..... ...|.++|-+ |+. +..+..+... ++ .+.....++|.+++..++.++..
T Consensus 241 l~Va~~~----------~g~V~~~~p~-G~~----------l~~i~~P~~~--~~-~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 241 LYVAMYG----------QGRVLVFNKR-GYP----------IGQILIPGRD--EG-HMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp EEEEEET----------TTEEEEECTT-SCE----------EEEEECTTGG--GT-CSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEEcC----------CCEEEEECCC-CcE----------EEEEeCCCcC--CC-cCceeeeEEEeCCCCEEEEEcCCC
Confidence 4333322 2468888843 332 1111111100 00 11123456788888777766542
Q ss_pred --CCeeEEEEEECC
Q 004141 410 --GSSQVIISVNVS 421 (771)
Q Consensus 410 --~~~~~l~~~d~~ 421 (771)
.+...||+++..
T Consensus 297 ~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 297 EMGGGSMLYTVNGF 310 (319)
T ss_dssp GGTCCEEEEEEECS
T ss_pred CcCCceeEEEEeCC
Confidence 345678888764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.04 E-value=0.00033 Score=68.97 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=47.9
Q ss_pred ecCCCCcceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeE
Q 004141 47 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 126 (771)
Q Consensus 47 ~~~s~dg~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 126 (771)
.++++||+ |.+ .+.. .+.||.++ .++ +...+...+ +.....+++|||+.+ ++.... +....
T Consensus 33 iAv~pdG~-l~v-t~~~-------~~~I~~i~--p~g-~~~~~~~~~-----~~~~gla~~~dG~l~-v~~~~~-~~~~~ 93 (302)
T d2p4oa1 33 LASAPDGT-IFV-TNHE-------VGEIVSIT--PDG-NQQIHATVE-----GKVSGLAFTSNGDLV-ATGWNA-DSIPV 93 (302)
T ss_dssp EEECTTSC-EEE-EETT-------TTEEEEEC--TTC-CEEEEEECS-----SEEEEEEECTTSCEE-EEEECT-TSCEE
T ss_pred EEECCCCC-EEE-EeCC-------CCEEEEEe--CCC-CEEEEEcCC-----CCcceEEEcCCCCeE-EEecCC-ceEEE
Confidence 35578997 433 3332 24677754 333 333333332 456778999999843 333222 22223
Q ss_pred EEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCe
Q 004141 127 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 166 (771)
Q Consensus 127 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~ 166 (771)
+... ..+....+....... ....+.+.+||+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~--------~~n~i~~~~~g~~ 126 (302)
T d2p4oa1 94 VSLVKSDGTVETLLTLPDAI--------FLNGITPLSDTQY 126 (302)
T ss_dssp EEEECTTSCEEEEEECTTCS--------CEEEEEESSSSEE
T ss_pred EEecccccceeeccccCCcc--------ccceeEEccCCCE
Confidence 3333 334444555443221 1257889999953
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=2.7e-06 Score=83.50 Aligned_cols=114 Identities=11% Similarity=-0.005 Sum_probs=73.1
Q ss_pred CCCCcEEEEEcCCCCCCCCCcchHHHH-HHHHCCcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHcCC
Q 004141 534 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 612 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~~~~~~~~~~~-~la~~G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 612 (771)
+..+|++|++||............... +|....+.|+++|+...... .+..... + .....+.+...|+.|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~~-n-~~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQASY-N-TRVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHHH-H-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHHH-h-HHHHHHHHHHHHHHHHHhcC
Confidence 346899999999765543333333444 45556699999998641110 0000000 0 00112334455666665555
Q ss_pred CCCCeEEEEEcChhHHHHHHHHhhCCCceeEEEecCCcc
Q 004141 613 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 651 (771)
Q Consensus 613 ~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~ 651 (771)
++.+++.|+|||+||++|..+..+.+.++..++...|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 889999999999999999999887777788888877764
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=9e-06 Score=77.93 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=64.2
Q ss_pred CCCCcEEEEEcCCCCCC-CCCcchHHHHHHHHC--CcEEEEECCCCCCCCChhhhhcCCCCccccchhhHHHHHHHHHHc
Q 004141 534 CSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 610 (771)
Q Consensus 534 ~~~~p~vv~~HGg~~~~-~~~~~~~~~~~la~~--G~~Vv~~d~rG~~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 610 (771)
..+.| ||++||-+.+. ....+......+.+. |+.|+++++.... ......... ..+++..+.+...+++
T Consensus 3 ~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~--~~~~~~~~~-----~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL--REDVENSFF-----LNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSH--HHHHHHHHH-----SCHHHHHHHHHHHHHS
T ss_pred CCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCc--ccccccchh-----hhHHHHHHHHHHHHHh
Confidence 44556 77899965443 233566666677655 9999999975411 011011110 1233444443333333
Q ss_pred CCCCCCeEEEEEcChhHHHHHHHHhhCCC-ceeEEEecCC
Q 004141 611 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 649 (771)
Q Consensus 611 ~~~d~~ri~l~G~S~GG~~a~~~a~~~p~-~~~~~v~~~p 649 (771)
.....++|-++||||||.++-.++.+.+. .+..+|..++
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 21234689999999999999999998865 4666666554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=8.9e-05 Score=72.23 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=84.2
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccC
Q 004141 104 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 183 (771)
Q Consensus 104 ~~~SPdG~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 183 (771)
.+++|+++.+++..... + ...+|+-..............+. ...++|||||++|+....
T Consensus 124 ~~~~~~~~~~~v~~~~~-~---~v~~~~~~~~~~~~~~~~~~~~~------v~~~~~s~~~~~l~~g~~----------- 182 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEG-N---TIQVFKLSDLEVSFDLKTPLRAK------PSYISISPSETYIAAGDV----------- 182 (287)
T ss_dssp EEEEECSSEEEEEETTT-S---CEEEEETTEEEEEEECSSCCSSC------EEEEEECTTSSEEEEEET-----------
T ss_pred eeeeccCcceeeecccc-c---eeeeeeccccceeeeeeeccCCc------eeEEEeccCccccccccc-----------
Confidence 45677888777654432 2 23344222222222222112112 268899999998877532
Q ss_pred CCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 184 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
...|.+||+.+++.....-......+..++|+|+++. ......
T Consensus 183 ---------------------------------dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~~~~~~ 225 (287)
T d1pgua2 183 ---------------------------------MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG----ANEEEI 225 (287)
T ss_dssp ---------------------------------TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----------CC
T ss_pred ---------------------------------cccccceeecccccccccccccccccceeeecccccc----cccccC
Confidence 3578899998887544311333456788999998764 332221
Q ss_pred cCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecC
Q 004141 264 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 337 (771)
Q Consensus 264 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~ 337 (771)
... +......+..|+++|+. ..++ ...+..+...+....|+||++ |+..+.+
T Consensus 226 ~~~-----~l~sgs~D~~i~iw~~~----------------~~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D 278 (287)
T d1pgua2 226 EED-----LVATGSLDTNIFIYSVK----------------RPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278 (287)
T ss_dssp SCC-----EEEEEETTSCEEEEESS----------------CTTCCEEETTSSTTCEEEEEEEETTE-EEEEETT
T ss_pred CCC-----eeEeecCCCeEEEEECC----------------CCCeEEEEeCCCCCCeEEEEECCCCE-EEEEECC
Confidence 110 00111234478888872 2233 345556677789999999975 6655544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00081 Score=66.26 Aligned_cols=182 Identities=11% Similarity=-0.038 Sum_probs=99.6
Q ss_pred cCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 212 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 212 ~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
+.+.....+.++|+...+.... .... ......+++|++. |+..+ .+..|.++|+
T Consensus 151 ~~~~~d~~i~~~d~~~~~~~~~--~~~~-~~~~~~~~~~~~~----l~s~~---------------~dg~i~~~d~---- 204 (342)
T d2ovrb2 151 VSGAYDFMVKVWDPETETCLHT--LQGH-TNRVYSLQFDGIH----VVSGS---------------LDTSIRVWDV---- 204 (342)
T ss_dssp EEEETTSCEEEEEGGGTEEEEE--ECCC-SSCEEEEEECSSE----EEEEE---------------TTSCEEEEET----
T ss_pred eeecCCCeEEEeecccceeeEE--EcCc-ccccccccCCCCE----EEEEe---------------CCCeEEEeec----
Confidence 3344567889999887765444 2222 2345567889886 77655 3346888887
Q ss_pred chhhhhhhhcCCCCCCc-ceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceee
Q 004141 292 SEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 370 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 370 (771)
..++ ...+..+...+.. ++++++.|+..+.+ ..|.+||+...+.......
T Consensus 205 -------------~~~~~~~~~~~~~~~v~~--~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~--- 255 (342)
T d2ovrb2 205 -------------ETGNCIHTLTGHQSLTSG--MELKDNILVSGNAD-----------STVKIWDIKTGQCLQTLQG--- 255 (342)
T ss_dssp -------------TTCCEEEEECCCCSCEEE--EEEETTEEEEEETT-----------SCEEEEETTTCCEEEEECS---
T ss_pred -------------ccceeeeEecccccceeE--EecCCCEEEEEcCC-----------CEEEEEecccccccccccc---
Confidence 4444 3444444444444 45566777766544 3588888776543211000
Q ss_pred EEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCC-----CCceeeEEeecC
Q 004141 371 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAE-----SNFSWSLLTLDG 444 (771)
Q Consensus 371 ~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~-----~~~~~~~~s~dg 444 (771)
. ........+++.+++.+ ++...++. |..+|+.+|+.. .+.... ..+....|++++
T Consensus 256 -------~--------~~~~~~~~~~~~~~~~~-~s~s~Dg~--i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~ 317 (342)
T d2ovrb2 256 -------P--------NKHQSAVTCLQFNKNFV-ITSSDDGT--VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317 (342)
T ss_dssp -------T--------TSCSSCEEEEEECSSEE-EEEETTSE--EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred -------c--------ceeeeceeecccCCCee-EEEcCCCE--EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence 0 00011223345566644 55555555 555588888764 332211 123445677776
Q ss_pred CEEEEEEeCCCCCCeEEEEEec
Q 004141 445 DNIIAVSSSPVDVPQVKYGYFV 466 (771)
Q Consensus 445 ~~l~~~~~~~~~p~~l~~~~~~ 466 (771)
..++....+.+.-..|++.|+.
T Consensus 318 ~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 318 LVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEEECSSSSSCCEEEEEECC
T ss_pred CEEEEEeCCCCCeeEEEEEeCC
Confidence 5554444444555677777764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.91 E-value=2.8e-05 Score=77.27 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=38.8
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.+...+|||+|++|+..+.+. .|.+||+.+++........ ......+|+
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg-----------~v~vWD~~~~~~l~~~~~~--------------------~~~~~~~~s 301 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDG-----------IISCWNLQTRKKIKNFAKF--------------------NEDSVVKIA 301 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTS-----------CEEEEETTTTEEEEECCCC--------------------SSSEEEEEE
T ss_pred cceeEEecCCccEEEEECCCC-----------EEEEEECCCCcEEEEecCC--------------------CCCEEEEEE
Confidence 466789999999988777553 4899998876532110000 012245789
Q ss_pred cCCCEEEEEee
Q 004141 398 SDGCTMLLSSI 408 (771)
Q Consensus 398 ~Dg~~l~~~~~ 408 (771)
++|+.|++.+.
T Consensus 302 ~~~~~l~~a~s 312 (342)
T d1yfqa_ 302 CSDNILCLATS 312 (342)
T ss_dssp ECSSEEEEEEE
T ss_pred eCCCEEEEEEc
Confidence 99997776554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.004 Score=59.43 Aligned_cols=182 Identities=8% Similarity=-0.044 Sum_probs=108.6
Q ss_pred ceEEEEEccCCc----eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccch
Q 004141 218 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 293 (771)
Q Consensus 218 ~~l~v~d~~~~~----~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 293 (771)
..|+..++++.. .+.+. ......+..++.-+-++. |+++.. ....|.++++
T Consensus 52 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~----lY~~d~--------------~~~~I~v~~~------ 106 (266)
T d1ijqa1 52 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 106 (266)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred CEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccce----EEEEec--------------CCCEEEeEec------
Confidence 567777765421 22221 222334566777777887 777531 2337899998
Q ss_pred hhhhhhhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEE
Q 004141 294 ASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 372 (771)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 372 (771)
++...+. +..........++.|...+|+|..... ...|++.++++...+.+....
T Consensus 107 -----------~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---------~~~I~r~~~dGs~~~~l~~~~---- 162 (266)
T d1ijqa1 107 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTEN---- 162 (266)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECSS----
T ss_pred -----------CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---------CcceeEeccCCCceecccccc----
Confidence 5555444 333344567788899888888876432 246999998775543221110
Q ss_pred ecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCc-eeeEEeecCCEEEEEE
Q 004141 373 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVS 451 (771)
Q Consensus 373 ~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~-~~~~~s~dg~~l~~~~ 451 (771)
-. .+..+++.+.+++||+... ....|.++++++...+.+....... .-..++.++++|+++-
T Consensus 163 --------~~-------~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 163 --------IQ-------WPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp --------CS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred --------cc-------eeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 01 1234567777888988743 3457899999877666654433322 2336778889988875
Q ss_pred eCCCCCCeEEEEEeccc
Q 004141 452 SSPVDVPQVKYGYFVDK 468 (771)
Q Consensus 452 ~~~~~p~~l~~~~~~~~ 468 (771)
. ....|++++..++
T Consensus 226 ~---~~~~I~~~~~~~g 239 (266)
T d1ijqa1 226 I---INEAIFSANRLTG 239 (266)
T ss_dssp T---TTTEEEEEETTTC
T ss_pred C---CCCeEEEEECCCC
Confidence 3 3457888775544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.67 E-value=0.0082 Score=56.96 Aligned_cols=206 Identities=10% Similarity=0.085 Sum_probs=121.0
Q ss_pred ceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCCcccccccCCCcccceeecCCCCeEEEEecCCCCCCC
Q 004141 101 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 179 (771)
Q Consensus 101 ~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~ 179 (771)
+....+-+..++|.+... ....|+.+. +++..+.+....... ..++++..-+..|++...
T Consensus 38 ~~~ld~D~~~~~iywsd~---~~~~I~~~~l~g~~~~~v~~~~~~~---------p~~iAvD~~~~~lY~~d~------- 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDI---SEPSIGRASLHGGEPTTIIRQDLGS---------PEGIALDHLGRTIFWTDS------- 98 (263)
T ss_dssp EEEEEEETTTTEEEEEET---TTTEEEEEESSSCCCEEEECTTCCC---------EEEEEEETTTTEEEEEET-------
T ss_pred EEEEEEEeCCCEEEEEEC---CCCeEEEEEcccCCcEEEEEecccc---------ccEEEEeccCCeEEEecc-------
Confidence 445667777888865432 234577777 455444444322111 136666666777776521
Q ss_pred CccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEE
Q 004141 180 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 259 (771)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~ 259 (771)
....|.++++++...+.+. ...-..+..++..|.+.. |+
T Consensus 99 ------------------------------------~~~~I~~~~~dg~~~~~l~-~~~l~~p~~l~vdp~~g~----ly 137 (263)
T d1npea_ 99 ------------------------------------QLDRIEVAKMDGTQRRVLF-DTGLVNPRGIVTDPVRGN----LY 137 (263)
T ss_dssp ------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEETTTTE----EE
T ss_pred ------------------------------------CCCEEEEEecCCceEEEEe-cccccCCcEEEEecccCc----EE
Confidence 2368899999888766652 122235677888887775 66
Q ss_pred EEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCC
Q 004141 260 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKS 338 (771)
Q Consensus 260 ~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~ 338 (771)
++.+.. ....|++.++ ++...+.+. .........++.+.+++|+|.....
T Consensus 138 ~t~~~~------------~~~~I~r~~~-----------------dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 138 WTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp EEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred EeecCC------------CCcEEEEecC-----------------CCCCceeeeeecccccceEEEeecCcEEEEEeCCC
Confidence 654211 1236999998 555544443 3334456788899999999986442
Q ss_pred CCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEE
Q 004141 339 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 418 (771)
Q Consensus 339 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~ 418 (771)
..|...++++...+.+..+ ...| .. .+-++.+||++.. +...|+++
T Consensus 189 ----------~~I~~~~~~g~~~~~v~~~-------------~~~P-------~~--lav~~~~lYwtd~--~~~~I~~~ 234 (263)
T d1npea_ 189 ----------HRAECLNPAQPGRRKVLEG-------------LQYP-------FA--VTSYGKNLYYTDW--KTNSVIAM 234 (263)
T ss_dssp ----------TEEEEEETTEEEEEEEEEC-------------CCSE-------EE--EEEETTEEEEEET--TTTEEEEE
T ss_pred ----------CEEEEEECCCCCeEEEECC-------------CCCc-------EE--EEEECCEEEEEEC--CCCEEEEE
Confidence 4688888876443211110 0011 12 2335667877643 34579999
Q ss_pred ECCCCcEEEec
Q 004141 419 NVSSGELLRIT 429 (771)
Q Consensus 419 d~~tg~~~~l~ 429 (771)
|..+|+...+.
T Consensus 235 ~~~~g~~~~~~ 245 (263)
T d1npea_ 235 DLAISKEMDTF 245 (263)
T ss_dssp ETTTTEEEEEE
T ss_pred ECCCCccceEE
Confidence 99888866554
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.62 E-value=0.004 Score=59.29 Aligned_cols=181 Identities=8% Similarity=-0.042 Sum_probs=111.9
Q ss_pred CceEEEEEccCCceeeccCCCCC-CccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 295 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~-~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 295 (771)
...|+..+++++..+.+ .... ..+..++...-++. |+++.. ....|.++++
T Consensus 57 ~~~I~~~~l~g~~~~~v--~~~~~~~p~~iAvD~~~~~----lY~~d~--------------~~~~I~~~~~-------- 108 (263)
T d1npea_ 57 EPSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM-------- 108 (263)
T ss_dssp TTEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET--------
T ss_pred CCeEEEEEcccCCcEEE--EEeccccccEEEEeccCCe----EEEecc--------------CCCEEEEEec--------
Confidence 36799999988877666 2222 34566677665666 776641 2347889998
Q ss_pred hhhhhcCCCCCCcceecC-CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 296 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 296 ~~~~~~~~~~~~~~~~lt-~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
++...+.|. .........++.|...+|+|..... ....|++.++++.....+....
T Consensus 109 ---------dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--------~~~~I~r~~~dG~~~~~i~~~~------ 165 (263)
T d1npea_ 109 ---------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQDN------ 165 (263)
T ss_dssp ---------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEECTT------
T ss_pred ---------CCceEEEEecccccCCcEEEEecccCcEEEeecCC--------CCcEEEEecCCCCCceeeeeec------
Confidence 555544443 3334577888999999888877432 1346999998775543221100
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCC
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 454 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~ 454 (771)
-. .+..+++.+.+++||+.. .+...|.+++++++..+.+..... .-..++.++++||++-..
T Consensus 166 ------~~-------~P~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~~~~lYwtd~~- 227 (263)
T d1npea_ 166 ------LG-------LPNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWK- 227 (263)
T ss_dssp ------CS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETT-
T ss_pred ------cc-------ccceEEEeecCcEEEEEe--CCCCEEEEEECCCCCeEEEECCCC--CcEEEEEECCEEEEEECC-
Confidence 00 112455666777888864 344578899998777666654332 123566678888877643
Q ss_pred CCCCeEEEEEeccc
Q 004141 455 VDVPQVKYGYFVDK 468 (771)
Q Consensus 455 ~~p~~l~~~~~~~~ 468 (771)
...|++++..++
T Consensus 228 --~~~I~~~~~~~g 239 (263)
T d1npea_ 228 --TNSVIAMDLAIS 239 (263)
T ss_dssp --TTEEEEEETTTT
T ss_pred --CCEEEEEECCCC
Confidence 346787775433
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.0019 Score=63.46 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|++||+...+..............-..++++++. ++..+ .+..|.++|+
T Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s---------------~Dg~i~iwd~---------- 287 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSS---------------DDGTVKLWDL---------- 287 (342)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEecccccccccccccceeeeceeecccCCCe----eEEEc---------------CCCEEEEEEC----------
Confidence 578999988776544411112222233455666665 66554 2347888898
Q ss_pred hhhcCCCCCCcc-eecC-----CCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCC
Q 004141 298 ELKESSSEDLPV-VNLT-----ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 358 (771)
Q Consensus 298 ~~~~~~~~~~~~-~~lt-----~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~ 358 (771)
.+++. +.+. .+...+.+.+|||||..|+..+.+. .....|+++|++.
T Consensus 288 -------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG-------t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 288 -------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG-------TEETKLLVLDFDV 340 (342)
T ss_dssp -------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS-------SSCCEEEEEECCC
T ss_pred -------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC-------CCeeEEEEEeCCC
Confidence 66654 3332 1233578899999998777666542 2235688888764
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.011 Score=56.29 Aligned_cols=226 Identities=10% Similarity=0.080 Sum_probs=126.2
Q ss_pred EEEEEEeecCCCCccceeecCCccccccceEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCc--ceEEEecCCcccccc
Q 004141 73 FMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQ--LEKEFHVPQTVHGSV 149 (771)
Q Consensus 73 ~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~ 149 (771)
.|+.++++ +.+...+... ........|.+..++|.++-. ....++... ++.. ....+-...+..
T Consensus 11 ~I~~~~l~--~~~~~~~~~~-----~~~~~~id~d~~~~~lYw~D~---~~~~I~~~~l~~~~~~~~~~~~~~~~~~--- 77 (266)
T d1ijqa1 11 EVRKMTLD--RSEYTSLIPN-----LRNVVALDTEVASNRIYWSDL---SQRMICSTQLDRAHGVSSYDTVISRDIQ--- 77 (266)
T ss_dssp SEEEEETT--SCCCEEEECS-----CSSEEEEEEETTTTEEEEEET---TTTEEEEEEC--------CEEEECSSCS---
T ss_pred eEEEEECC--CCcceeeeCC-----CCceEEEEEEeCCCEEEEEEC---CCCEEEEEEecCCCCCcceEEEEeCCCC---
Confidence 46665653 3344444222 244567788888888866532 223566555 2211 111111111111
Q ss_pred cCCCcccceeecCCCCeEEEEecCCCCCCCCccCCCCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCc
Q 004141 150 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE 229 (771)
Q Consensus 150 ~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~ 229 (771)
...++++.+-++.|++... ....|.++++++..
T Consensus 78 ----~p~glAvD~~~~~lY~~d~-------------------------------------------~~~~I~v~~~~g~~ 110 (266)
T d1ijqa1 78 ----APDGLAVDWIHSNIYWTDS-------------------------------------------VLGTVSVADTKGVK 110 (266)
T ss_dssp ----CCCEEEEETTTTEEEEEET-------------------------------------------TTTEEEEEETTSSS
T ss_pred ----CcceEEEeeccceEEEEec-------------------------------------------CCCEEEeEecCCce
Confidence 1146777777887777421 23579999999887
Q ss_pred eeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcc
Q 004141 230 VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 309 (771)
Q Consensus 230 ~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 309 (771)
.+.+. ......+..++..|.... |+++.+ .....|++.++ ++...
T Consensus 111 ~~~~~-~~~~~~P~~l~vd~~~g~----ly~~~~-------------~~~~~I~r~~~-----------------dGs~~ 155 (266)
T d1ijqa1 111 RKTLF-RENGSKPRAIVVDPVHGF----MYWTDW-------------GTPAKIKKGGL-----------------NGVDI 155 (266)
T ss_dssp EEEEE-ECTTCCEEEEEEETTTTE----EEEEEC-------------SSSCEEEEEET-----------------TSCCE
T ss_pred EEEEE-cCCCCCcceEEEEcccCe----EEEecc-------------CCCcceeEecc-----------------CCCce
Confidence 66652 222335667788886664 665542 12347999998 55655
Q ss_pred eecCC-CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCccccc
Q 004141 310 VNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 388 (771)
Q Consensus 310 ~~lt~-~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~ 388 (771)
+.+.. ........++.+.+++|+|..... ..|..+++++.....+.... ..++
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~----------~~I~~~~~dG~~~~~~~~~~------------~~~~---- 209 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWVDSKL----------HSISSIDVNGGNRKTILEDE------------KRLA---- 209 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTT----------TEEEEEETTSCSCEEEEECT------------TTTS----
T ss_pred ecccccccceeeEEEeeccccEEEEecCCc----------CEEEEEECCCCCEEEEEeCC------------Cccc----
Confidence 55543 334567789999999999986543 46999998775432211100 0000
Q ss_pred CCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCc
Q 004141 389 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 424 (771)
Q Consensus 389 ~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~ 424 (771)
.....+-++..||++.. ....|++++..+|+
T Consensus 210 ---~p~~lav~~~~ly~td~--~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 210 ---HPFSLAVFEDKVFWTDI--INEAIFSANRLTGS 240 (266)
T ss_dssp ---SEEEEEEETTEEEEEET--TTTEEEEEETTTCC
T ss_pred ---ccEEEEEECCEEEEEEC--CCCeEEEEECCCCc
Confidence 01123445667776542 33578888876664
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.39 E-value=0.0018 Score=63.07 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=81.1
Q ss_pred CceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhh
Q 004141 217 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 296 (771)
Q Consensus 217 ~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 296 (771)
...|+.+|+++++.+... . ...+..+++.+||+ |++.+. ..|+++|.
T Consensus 39 ~~~I~r~d~~~g~~~~~~-~--~~~~~~i~~~~dg~-----l~va~~----------------~gl~~~d~--------- 85 (295)
T d2ghsa1 39 ERELHELHLASGRKTVHA-L--PFMGSALAKISDSK-----QLIASD----------------DGLFLRDT--------- 85 (295)
T ss_dssp GTEEEEEETTTTEEEEEE-C--SSCEEEEEEEETTE-----EEEEET----------------TEEEEEET---------
T ss_pred CCEEEEEECCCCeEEEEE-C--CCCcEEEEEecCCC-----EEEEEe----------------CccEEeec---------
Confidence 368999999999877652 2 23466788888886 555431 16889997
Q ss_pred hhhhcCCCCCCcceecCCCC-----ccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeE
Q 004141 297 LELKESSSEDLPVVNLTESI-----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 371 (771)
Q Consensus 297 ~~~~~~~~~~~~~~~lt~~~-----~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 371 (771)
++++.+.+.... .......+.|+|+ |+|........ .....+|.++ .++...+..+.
T Consensus 86 --------~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~----~~~g~l~~~~--~g~~~~~~~~~--- 147 (295)
T d2ghsa1 86 --------ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE----TGAGSIYHVA--KGKVTKLFADI--- 147 (295)
T ss_dssp --------TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC----TTCEEEEEEE--TTEEEEEEEEE---
T ss_pred --------ccceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc----ccceeEeeec--CCcEEEEeecc---
Confidence 777776664321 1356678899998 56665443211 1123455443 34332221110
Q ss_pred EecccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECC
Q 004141 372 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 421 (771)
Q Consensus 372 ~~~~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~ 421 (771)
. ....++|++|++.++++.+.. ..||+++++
T Consensus 148 ----------~-------~~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~d 178 (295)
T d2ghsa1 148 ----------S-------IPNSICFSPDGTTGYFVDTKV--NRLMRVPLD 178 (295)
T ss_dssp ----------S-------SEEEEEECTTSCEEEEEETTT--CEEEEEEBC
T ss_pred ----------C-------CcceeeecCCCceEEEeeccc--ceeeEeeec
Confidence 0 123578999999998876544 456666653
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.38 E-value=0.0097 Score=52.14 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=101.2
Q ss_pred cCceEEEEEcc-CCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 216 RQPSLFVININ-SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 216 ~~~~l~v~d~~-~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
....||..++. -|+..++. .+....+.+. .-|++. ++|++.. .....||.++
T Consensus 80 E~Hai~~~Nlk~~GEE~~i~-spk~vRI~S~--~yddk~----vvF~Gas------------ed~~~LYvie-------- 132 (313)
T d2hu7a1 80 EQHALFKVNTSRPGEEQRLE-AVKPMRILSG--VDTGEA----VVFTGAT------------EDRVALYALD-------- 132 (313)
T ss_dssp CCEEEEEEETTSTTCEEECT-TSCSBEEEEE--EECSSC----EEEEEEC------------SSCEEEEEEE--------
T ss_pred ceeeEEEEccCCCCeeeEec-CCceEEEEEe--eecCce----EEEeccc------------CCceEEEEEe--------
Confidence 45789999987 25556662 3444455444 458999 9999832 3334677774
Q ss_pred hhhhhhcCCCCCCcceecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEec
Q 004141 295 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 374 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 374 (771)
+|..+.|+.-.. .+.+=.=.|++|+=..--. | +...+++.|+.+|+.+.++.....
T Consensus 133 -----------gGklrkL~~vPp--FsFVtDI~~d~I~G~g~~~----g---~~~sfF~adl~SG~lri~tpkeGS---- 188 (313)
T d2hu7a1 133 -----------GGGLRELARLPG--FGFVSDIRGDLIAGLGFFG----G---GRVSLFTSNLSSGGLRVFDSGEGS---- 188 (313)
T ss_dssp -----------TTEEEEEEEESS--CEEEEEEETTEEEEEEEEE----T---TEEEEEEEETTTEEEEEECCSSEE----
T ss_pred -----------CCceeeeccCCC--cceEEeccCCeEEEEeeec----C---CcceEEEEecccCCEEEecCCCCc----
Confidence 577777654322 1111112366666433322 1 134488999988887666555422
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC--------CceeeEEeecCCE
Q 004141 375 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------NFSWSLLTLDGDN 446 (771)
Q Consensus 375 ~~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~--------~~~~~~~s~dg~~ 446 (771)
......+++.| +..-....+...+..+|+.+++..++..+.. .+.|..+.||++.
T Consensus 189 ----------------~~~ay~~~gnK-V~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 189 ----------------FSSASISPGMK-VTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp ----------------EEEEEECTTSC-EEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred ----------------ccceeEccCce-eeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 23445677777 4333334456666678999999999976554 2345567888887
Q ss_pred EEEEEe
Q 004141 447 IIAVSS 452 (771)
Q Consensus 447 l~~~~~ 452 (771)
++.+..
T Consensus 252 ~iiakr 257 (313)
T d2hu7a1 252 AVVARR 257 (313)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 555544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.36 E-value=0.014 Score=56.93 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=59.2
Q ss_pred ceEEEEEccCC-cee---eccCCCC--CCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEeccccc
Q 004141 218 PSLFVININSG-EVQ---AVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 291 (771)
Q Consensus 218 ~~l~v~d~~~~-~~~---~l~~~~~--~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 291 (771)
..|+.+|+... .+. .....+. ......+++.+||+ |+.+.+ ....|+++|.
T Consensus 198 ~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-----lyVa~~--------------~~g~I~~~dp---- 254 (314)
T d1pjxa_ 198 KKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP---- 254 (314)
T ss_dssp TEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT----
T ss_pred cceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-----EEEEEc--------------CCCEEEEEeC----
Confidence 57888876543 221 1100111 22345677888886 655442 2347999997
Q ss_pred chhhhhhhhcCCCCCCcce-ecCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCC
Q 004141 292 SEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 361 (771)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~-~lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~ 361 (771)
+++... .+........+.+|.||+++|+..... ...|+++++...+.
T Consensus 255 -------------~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~----------~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 255 -------------DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE----------NNAVWKFEWQRNGK 302 (314)
T ss_dssp -------------TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT----------TTEEEEEECSSCBC
T ss_pred -------------CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECC----------CCcEEEEECCCCCh
Confidence 656543 343333456789999999988666544 25799999876554
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.25 E-value=0.0037 Score=64.25 Aligned_cols=126 Identities=19% Similarity=0.241 Sum_probs=77.5
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--------------------cEEEEECCCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRGS 577 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~Vv~~d~rG~ 577 (771)
+..+..|++.... .....|+||++-|||+.+.. ...|.+.| ..++.+|.+-.
T Consensus 27 ~~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~------~g~~~e~GP~~i~~~~~~~~N~~sW~~~anllfiD~PvG 98 (421)
T d1wpxa1 27 DKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSL------TGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVN 98 (421)
T ss_dssp CCEEEEEEECCSS--CTTTSCEEEEECCTTTBCTH------HHHHHTTSSEEECTTSCEEECTTCGGGSSEEEEECCSTT
T ss_pred CceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHH------HHHHHhcCCcEECCCCccccCCcccccccCEEEEecCCC
Confidence 4468888876543 33567999999999987531 12222222 67888886644
Q ss_pred CCCChhhhhcCCCCccccchhhHHHHHHHHHHc-CCC--CCCeEEEEEcChhHHHHHHHHhh---CC---CceeEEEecC
Q 004141 578 LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARN 648 (771)
Q Consensus 578 ~~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~ri~l~G~S~GG~~a~~~a~~---~p---~~~~~~v~~~ 648 (771)
.|+....... ..-.....+|+.++++...+. +.. ...++.|.|.|+||..+-.+|.+ +. -.++++++.+
T Consensus 99 tGfSy~~~~~--~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGn 176 (421)
T d1wpxa1 99 VGFSYSGSSG--VSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176 (421)
T ss_dssp STTCBCSSCC--CCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEES
T ss_pred CCceecCCcc--ccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecC
Confidence 4554321111 111112245666666554443 222 24579999999999988887743 12 2478999999
Q ss_pred Cccch
Q 004141 649 PLCNL 653 (771)
Q Consensus 649 p~~~~ 653 (771)
|..+.
T Consensus 177 g~~dp 181 (421)
T d1wpxa1 177 GLTDP 181 (421)
T ss_dssp CCCCH
T ss_pred Ccccc
Confidence 98875
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.016 Score=54.78 Aligned_cols=140 Identities=4% Similarity=-0.037 Sum_probs=72.1
Q ss_pred ccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhhhhhcCCCCCCcceecC-CCCccc
Q 004141 241 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSA 319 (771)
Q Consensus 241 ~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~lt-~~~~~~ 319 (771)
.+..+++.++|+ |++... ....++.++. .+....... ......
T Consensus 99 ~p~~iavd~~g~-----i~v~d~--------------~~~~~~~~~~-----------------~~~~~~~~~~~~~~~p 142 (260)
T d1rwia_ 99 YPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA-----------------GSKTQTVLPFTGLNDP 142 (260)
T ss_dssp SEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT-----------------TCSSCEECCCCSCCSC
T ss_pred ecccccccccce-----eEeecc--------------cccccccccc-----------------ccceeeeeeecccCCc
Confidence 456788999886 655431 1225777765 333322222 222335
Q ss_pred cceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccccC
Q 004141 320 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 399 (771)
Q Consensus 320 ~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s~D 399 (771)
...+++|+|+ |++.... ..+|++++.++.....+.. ..+. .+..+++.++
T Consensus 143 ~~i~~~~~g~-~~v~~~~----------~~~i~~~d~~~~~~~~~~~--------------~~~~-----~p~gi~~d~~ 192 (260)
T d1rwia_ 143 DGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPF--------------TDIT-----APWGIAVDEA 192 (260)
T ss_dssp CEEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCC--------------SSCC-----SEEEEEECTT
T ss_pred ceeeecCCCC-Eeeeccc----------cccccccccccceeeeeec--------------cccC-----CCccceeeee
Confidence 6678899998 5444432 3468888876644321110 0010 1234567778
Q ss_pred CCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCC-CceeeEEeecCCEEEEE
Q 004141 400 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAV 450 (771)
Q Consensus 400 g~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~-~~~~~~~s~dg~~l~~~ 450 (771)
|+ |+++. .....|++++.+++..+.+..... ......++++|+ |+++
T Consensus 193 g~-l~vsd--~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~-l~va 240 (260)
T d1rwia_ 193 GT-VYVTE--HNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVA 240 (260)
T ss_dssp CC-EEEEE--TTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCC-EEEE
T ss_pred ee-eeeee--cCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCC-EEEE
Confidence 86 55543 234467888776555444433221 223344555554 4433
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.11 Score=48.67 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=34.3
Q ss_pred cccCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCCCCceeeEEeecCCEEEEEEeCCCCCCeEEEEEecc
Q 004141 396 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 467 (771)
Q Consensus 396 ~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~~~ 467 (771)
.++++..| ++...++... .+|+.+++.......... ....++.+++.|+....+ ..+.+.++..
T Consensus 184 ~~~~~~~l-~~~~~dg~i~--i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~d----g~i~iwd~~~ 247 (293)
T d1p22a2 184 LQYRDRLV-VSGSSDNTIR--LWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAYD----GKIKVWDLVA 247 (293)
T ss_dssp EEEETTEE-EEEETTSCEE--EEETTTCCEEEEECCCSS-CEEEEECCSSEEEEEETT----SCEEEEEHHH
T ss_pred ccCCCCeE-EEecCCCEEE--EEecccceeeeeecccce-eeeeccccceEEEEEcCC----CEEEEEECCC
Confidence 34456655 4444455544 458877776665544332 234566777766554432 3466666543
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.84 E-value=0.0011 Score=66.33 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred CeEEEEEcChhHHHHHHHHhh
Q 004141 616 SKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 616 ~ri~l~G~S~GG~~a~~~a~~ 636 (771)
++|.|+||||||..+-+++..
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHH
Confidence 589999999999999888764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.74 E-value=0.036 Score=52.15 Aligned_cols=94 Identities=11% Similarity=-0.053 Sum_probs=53.0
Q ss_pred ccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchh
Q 004141 215 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 294 (771)
Q Consensus 215 ~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 294 (771)
.....+.+||+.+++..... ......+. ..++++.. |+... .+..|.++|+
T Consensus 155 s~d~~i~~~d~~~~~~~~~~-~~~~~~v~--~~~~~~~~----l~~~~---------------~dg~i~i~d~------- 205 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTL-NGHKRGIA--CLQYRDRL----VVSGS---------------SDNTIRLWDI------- 205 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEE-ECCSSCEE--EEEEETTE----EEEEE---------------TTSCEEEEET-------
T ss_pred cCCCceeeecCCCCcEEEEE-cccccccc--cccCCCCe----EEEec---------------CCCEEEEEec-------
Confidence 34578999999888754431 11222233 34455665 65544 2336778887
Q ss_pred hhhhhhcCCCCCCccee-cCCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCC
Q 004141 295 SELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 360 (771)
Q Consensus 295 ~~~~~~~~~~~~~~~~~-lt~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~ 360 (771)
.+..... .......+ -.++++++.|+..+.+ ..|.+||+.++.
T Consensus 206 ----------~~~~~~~~~~~~~~~v--~~~~~~~~~l~sg~~d-----------g~i~iwd~~~~~ 249 (293)
T d1p22a2 206 ----------ECGACLRVLEGHEELV--RCIRFDNKRIVSGAYD-----------GKIKVWDLVAAL 249 (293)
T ss_dssp ----------TTCCEEEEECCCSSCE--EEEECCSSEEEEEETT-----------SCEEEEEHHHHT
T ss_pred ----------ccceeeeeecccceee--eeccccceEEEEEcCC-----------CEEEEEECCCCc
Confidence 4444332 22222222 3578899988766654 248888876544
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.0069 Score=62.87 Aligned_cols=127 Identities=20% Similarity=0.227 Sum_probs=78.6
Q ss_pred CceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHC---------------------CcEEEEECCCC
Q 004141 518 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------------------GYSLLIVNYRG 576 (771)
Q Consensus 518 g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~---------------------G~~Vv~~d~rG 576 (771)
+..+..|++.... .....|+++++-|||+++.. + ..|.+. -..++.+|.+-
T Consensus 31 ~~~lffw~~~s~~--~~~~~Pl~~wlnGGPG~SS~--~----g~~~e~GP~~v~~~~~~~~~N~~SW~~~anllfIDqPv 102 (452)
T d1ivya_ 31 SKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSL--D----GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPA 102 (452)
T ss_dssp TEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTH--H----HHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCST
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHH--H----HHHHccCCcEEcCCCCeeccCCcchhcccCEEEEecCC
Confidence 5568888886553 23567999999999987531 1 111122 26788889764
Q ss_pred CCCCChhhhhcCCCCccccchhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHhh----CCCceeEEEecCCcc
Q 004141 577 SLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 651 (771)
Q Consensus 577 ~~~~g~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p~~~~~~v~~~p~~ 651 (771)
..|+......... ........|+.+++. ++...+.....++.|+|.|+||..+-.+|.. ..-.++++++.+|++
T Consensus 103 GtGfS~~~~~~~~-~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~ 181 (452)
T d1ivya_ 103 GVGFSYSDDKFYA-TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLS 181 (452)
T ss_dssp TSTTCEESSCCCC-CBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCS
T ss_pred CcccccCCCCCCC-CCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCcc
Confidence 4445433211111 111112455556554 4433444556789999999999988888753 223589999999987
Q ss_pred ch
Q 004141 652 NL 653 (771)
Q Consensus 652 ~~ 653 (771)
+.
T Consensus 182 d~ 183 (452)
T d1ivya_ 182 SY 183 (452)
T ss_dssp BH
T ss_pred Cc
Confidence 64
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.86 E-value=0.73 Score=43.09 Aligned_cols=162 Identities=7% Similarity=0.007 Sum_probs=79.8
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..|.+++..+.....+. ...-......+..++|+ +++... ....++.++.
T Consensus 93 ~~i~~~~~~g~~~~~~~-~~~~~~p~~~avd~~G~-----i~v~~~--------------~~~~~~~~~~---------- 142 (279)
T d1q7fa_ 93 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 142 (279)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred cccccccccccceeecC-CCcccccceeccccCCc-----EEEEee--------------ccceeeEecc----------
Confidence 46777776655555441 22222345667777776 444431 2235677764
Q ss_pred hhhcCCCCCCcceec--CCCCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~l--t~~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.....+ ...........+.++|+ |++.... ...|+++|.++.-...+
T Consensus 143 -------~g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~~----------~~~V~~~d~~G~~~~~~----------- 193 (279)
T d1q7fa_ 143 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQI----------- 193 (279)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEE-----------
T ss_pred -------CCceeecccccccccccceeeecccee-EEeeecc----------ccceeeeecCCceeeee-----------
Confidence 33322322 12223355667888886 5444433 34688888654221111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEECCCCcEE-EecCCC-C-CceeeEEeecCCEEEE
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RITPAE-S-NFSWSLLTLDGDNIIA 449 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~-~l~~~~-~-~~~~~~~s~dg~~l~~ 449 (771)
. ..+.+. .+..++..++|+ |+++.. .+...|.+++. +|+.. .+.... . ......+++||. |++
T Consensus 194 g--~~g~~~-----~P~giavD~~G~-i~Vad~-~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~-l~V 259 (279)
T d1q7fa_ 194 G--GEGITN-----YPIGVGINSNGE-ILIADN-HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGS-VVL 259 (279)
T ss_dssp S--CTTTSC-----SEEEEEECTTCC-EEEEEC-SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTE-EEE
T ss_pred c--cccccc-----CCcccccccCCe-EEEEEC-CCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCc-EEE
Confidence 0 011111 123567888997 555432 33345666675 56643 332221 1 233345677764 443
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=95.77 E-value=0.049 Score=56.52 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=75.1
Q ss_pred CCceEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCCCcchHHHHHHHHCC--------------------cEEEEECCCC
Q 004141 517 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG--------------------YSLLIVNYRG 576 (771)
Q Consensus 517 ~g~~l~~~~~~P~~~~~~~~~p~vv~~HGg~~~~~~~~~~~~~~~la~~G--------------------~~Vv~~d~rG 576 (771)
.+..+.-|++...........|+||++-|||+.+.. ...|.+.| ..++.+|.+-
T Consensus 47 ~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~------~g~f~E~GP~~v~~~~~l~~Np~SWn~~an~lfIDqPv 120 (483)
T d1ac5a_ 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM------DGALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPT 120 (483)
T ss_dssp CCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTH------HHHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCST
T ss_pred CcceEEEEEEEecCCCCCCCCCEEEEECCCCcHHHH------HHHHHccCCeEECCCCceeeCCCcccccCCEEEEeCCC
Confidence 345577777765432222346999999999987531 12222222 6788888774
Q ss_pred CCCCChhhhhc-C--CCCccccc----hhhHHHHHH-HHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC-----------
Q 004141 577 SLGFGEEALQS-L--PGKVGSQD----VNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----------- 637 (771)
Q Consensus 577 ~~~~g~~~~~~-~--~~~~~~~~----~~D~~~~i~-~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~----------- 637 (771)
..||..+.... . .......+ ..++..+++ ++...+.....++.|.|.|+||..+-.+|..-
T Consensus 121 GvGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~ 200 (483)
T d1ac5a_ 121 GTGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDG 200 (483)
T ss_dssp TSTTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred CcCeeecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCC
Confidence 45554321100 0 00011111 334444443 33333444567899999999999888777531
Q ss_pred -CCceeEEEecCCccch
Q 004141 638 -PDKFVAAAARNPLCNL 653 (771)
Q Consensus 638 -p~~~~~~v~~~p~~~~ 653 (771)
.-.++++++.+|.++.
T Consensus 201 ~~inLkGi~IGNg~~d~ 217 (483)
T d1ac5a_ 201 DTYDLKALLIGNGWIDP 217 (483)
T ss_dssp SCCEEEEEEEEEECCCH
T ss_pred CcccceeeeecCCccCh
Confidence 1247888888887764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.46 E-value=0.3 Score=45.41 Aligned_cols=111 Identities=5% Similarity=-0.038 Sum_probs=57.4
Q ss_pred cccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecccccCCCCCcccccCCCCCCccc
Q 004141 318 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 397 (771)
Q Consensus 318 ~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~g~~~~~~~~~~~s 397 (771)
.....++.++|+ |++.... ..++++++..+......... .+. ....+++.
T Consensus 99 ~p~~iavd~~g~-i~v~d~~----------~~~~~~~~~~~~~~~~~~~~--------------~~~-----~p~~i~~~ 148 (260)
T d1rwia_ 99 YPEGLAVDTQGA-VYVADRG----------NNRVVKLAAGSKTQTVLPFT--------------GLN-----DPDGVAVD 148 (260)
T ss_dssp SEEEEEECTTCC-EEEEEGG----------GTEEEEECTTCSSCEECCCC--------------SCC-----SCCEEEEC
T ss_pred ecccccccccce-eEeeccc----------cccccccccccceeeeeeec--------------ccC-----Ccceeeec
Confidence 456788999997 4444322 24567776544332111000 010 12355677
Q ss_pred cCCCEEEEEeeeCCeeEEEEEECCCCcEEEecCCC-CCceeeEEeecCCEEEEEEeCCCCCCeEEEEEe
Q 004141 398 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 465 (771)
Q Consensus 398 ~Dg~~l~~~~~~~~~~~l~~~d~~tg~~~~l~~~~-~~~~~~~~s~dg~~l~~~~~~~~~p~~l~~~~~ 465 (771)
++|+ ++++.. ....|++++.++.....+.... .......++++|+ |+++.. ...++++++.
T Consensus 149 ~~g~-~~v~~~--~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~---~~~~i~~~~~ 210 (260)
T d1rwia_ 149 NSGN-VYVTDT--DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH---NTNQVVKLLA 210 (260)
T ss_dssp TTCC-EEEEEG--GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET---TTTEEEEECT
T ss_pred CCCC-Eeeecc--ccccccccccccceeeeeeccccCCCccceeeeeee-eeeeec---CCCEEEEEeC
Confidence 8887 555433 3346888898766555544332 2233345666665 444442 2345666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.20 E-value=0.045 Score=54.11 Aligned_cols=113 Identities=10% Similarity=0.058 Sum_probs=62.0
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCcceEEEecCC--cccccccCCCcccceeecCCCCeEEEEecCCCCCCCCccCC
Q 004141 108 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 184 (771)
Q Consensus 108 PdG~~la~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 184 (771)
+|||+| |+.+. .+..+-+|+ +.-+..+++..+. ..| +++.+++++..+..+... ...|.
T Consensus 97 yDGryl-FVNDk--an~RVAvIdl~~fkt~kIi~iPn~~~~H----------G~r~~~~p~T~YV~~~~e-~~vP~---- 158 (459)
T d1fwxa2 97 YDGRFL-FMNDK--ANTRVARVRCDVMKCDAILEIPNAKGIH----------GLRPQKWPRSNYVFCNGE-DETPL---- 158 (459)
T ss_dssp EEEEEE-EEEET--TTTEEEEEETTTTEEEEEEECSSCCSEE----------EEEECCSSBCSEEEEEEC-SCEES----
T ss_pred cceeEE-EEEcC--CCceEEEEECcceeeeEEEecCCCCCCc----------eeecccCCCeEEEEccCc-ccccc----
Confidence 489988 55443 456788888 6667777777643 444 566666666544332221 10000
Q ss_pred CCCCCCCCccCCCCCCcccccCCcCcccCCccCceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEee
Q 004141 185 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 263 (771)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~ 263 (771)
...+.... + ..+....+.++|.++.++..- ..-........++|||++ +++++.
T Consensus 159 -pndg~~l~-------------d-----~~~y~~~~t~ID~~tm~V~~Q--V~V~g~ld~~~~s~dGK~----af~Tsy 212 (459)
T d1fwxa2 159 -VNDGTNME-------------D-----VANYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGKW----AFSTSY 212 (459)
T ss_dssp -SCSSSSTT-------------C-----GG-EEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSSE----EEEEES
T ss_pred -CCCCcccc-------------c-----hhhcceEEEEEecCCceEEEE--eeeCCChhccccCCCCCE----EEEEec
Confidence 00000000 0 011235667889988876443 222234567899999997 666653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.83 E-value=1.1 Score=44.04 Aligned_cols=20 Identities=5% Similarity=-0.082 Sum_probs=15.5
Q ss_pred cceEEEeCCCCCeEEEEecC
Q 004141 100 GASAVVPSPSGSKLLVVRNP 119 (771)
Q Consensus 100 ~~~~~~~SPdG~~la~~~~~ 119 (771)
......+||||+++++.+.+
T Consensus 194 ~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 194 NLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp CCCCEEECSSSSEEEEEESC
T ss_pred ChhccccCCCCCEEEEEecc
Confidence 34578999999999877644
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.82 E-value=2.5 Score=39.07 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=66.3
Q ss_pred ceEEEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEecccccchhhhh
Q 004141 218 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 297 (771)
Q Consensus 218 ~~l~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 297 (771)
..+++++.++..+..+...........++..++|. |+++.+ ....|+.++.
T Consensus 135 ~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~-----i~v~d~--------------~~~~V~~~d~---------- 185 (279)
T d1q7fa_ 135 MRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY---------- 185 (279)
T ss_dssp TEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET----------
T ss_pred ceeeEeccCCceeecccccccccccceeeecccee-----EEeeec--------------cccceeeeec----------
Confidence 45666766555444431111222344566777764 555442 2236888885
Q ss_pred hhhcCCCCCCcceecCC--CCccccceeecCCCCEEEEEecCCCCCCCCccccccceeeecCCCCCCCCccceeeEEecc
Q 004141 298 ELKESSSEDLPVVNLTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 375 (771)
Q Consensus 298 ~~~~~~~~~~~~~~lt~--~~~~~~~p~~SpDG~~l~f~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 375 (771)
++.....+-. ........++.|+|+ |++..... ...|.+++.+ |+. +..+
T Consensus 186 -------~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~---------~~~v~~f~~~-G~~----------~~~~ 237 (279)
T d1q7fa_ 186 -------EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHN---------NFNLTIFTQD-GQL----------ISAL 237 (279)
T ss_dssp -------TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECSS---------SCEEEEECTT-SCE----------EEEE
T ss_pred -------CCceeeeecccccccCCcccccccCCe-EEEEECCC---------CcEEEEECCC-CCE----------EEEE
Confidence 3333333321 122345668999998 54443221 2346677633 331 1111
Q ss_pred cccCCCCCcccccCCCCCCccccCCCEEEEEeeeCCeeEEEEEE
Q 004141 376 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 419 (771)
Q Consensus 376 ~~~~~~~f~g~~~~~~~~~~~s~Dg~~l~~~~~~~~~~~l~~~d 419 (771)
....... ....++..+||. |+++ +......+|++.
T Consensus 238 ~~~~~~~-------~p~~vav~~dG~-l~V~-~~n~~v~~fr~~ 272 (279)
T d1q7fa_ 238 ESKVKHA-------QCFDVALMDDGS-VVLA-SKDYRLYIYRYV 272 (279)
T ss_dssp EESSCCS-------CEEEEEEETTTE-EEEE-ETTTEEEEEECS
T ss_pred eCCCCCC-------CEeEEEEeCCCc-EEEE-eCCCeEEEEEee
Confidence 1111111 123556788985 5554 445666777653
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=89.43 E-value=0.27 Score=45.75 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh----CC----CceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----AP----DKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~----~p----~~~~~~v~~~p~~ 651 (771)
.+++...++.+++.. ...+|.+.|||+||.+|..++.. .| ..+......+|-+
T Consensus 116 ~~~i~~~v~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTAH--PTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 445666666665553 24689999999999999887753 22 2355555666644
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=88.99 E-value=0.4 Score=44.47 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh---CCCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~---~p~~~~~~v~~~p~~ 651 (771)
.+++...++.++++. ...+|.+.|||+||.+|..++.. ....++.....+|-+
T Consensus 108 ~~~i~~~i~~~~~~~--~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 108 QDQVESLVKQQASQY--PDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHHHS--TTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhhC--CCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 345666666666653 24589999999999999987653 223456566666644
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=88.33 E-value=0.46 Score=44.18 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 635 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~ 635 (771)
..++...++.+.++. ...+|.+.|||+||.+|..++.
T Consensus 115 ~~~i~~~i~~~~~~~--~~~~i~vtGHSLGGAlA~L~a~ 151 (265)
T d3tgla_ 115 QNELVATVLDQFKQY--PSYKVAVTGHSLGGATVLLCAL 151 (265)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCceEEEecccchHHHHHHHHH
Confidence 345556665555542 3468999999999999998765
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=87.71 E-value=0.24 Score=46.35 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhh
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 636 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~ 636 (771)
..++...++.+.++. ...+|.+.|||+||.+|..++..
T Consensus 120 ~~~i~~~i~~~~~~~--~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 120 RDDIIKELKEVVAQN--PNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHHhC--CCceEEEeccchHHHHHHHHHHH
Confidence 345666666665553 24589999999999999987764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=87.43 E-value=0.3 Score=45.64 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhC---CCceeEEEecCCcc
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 651 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~---p~~~~~~v~~~p~~ 651 (771)
.+++...++.++++. ..-+|.+.|||+||.+|..++... ...+......+|-+
T Consensus 121 ~~~v~~~v~~~~~~~--~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Prv 176 (269)
T d1tiba_ 121 ADTLRQKVEDAVREH--PDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRV 176 (269)
T ss_dssp HHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhC--CCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCCc
Confidence 345666666666553 235899999999999999887632 22345444455533
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=86.94 E-value=1.7 Score=37.83 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHcCCCCCCeEEEEEcChhHHHHHHHHhhCC----CceeEEEecC
Q 004141 597 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARN 648 (771)
Q Consensus 597 ~~D~~~~i~~l~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p----~~~~~~v~~~ 648 (771)
+.++...+....++ ....|++|+|+|.|+.++..++..-+ ++++++++..
T Consensus 79 ~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 45666666666655 34679999999999999988876543 4677776543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.15 E-value=13 Score=35.23 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=29.2
Q ss_pred EEEEccCCceeeccCCCCCCccceEEEecCCCCCccEEEEEeecCcceeeeeeeeccCCceeEEEec
Q 004141 221 FVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 287 (771)
Q Consensus 221 ~v~d~~~~~~~~l~~~~~~~~~~~~~wspDg~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 287 (771)
+++..++++.+.+ ...-.....+++|||++. |++... ...+|+++++
T Consensus 189 ~v~~~~~~~~~~~--~~~l~~pNGI~~s~d~~~----lyVa~t--------------~~~~i~~y~~ 235 (340)
T d1v04a_ 189 FVTYYSPNDVRVV--AEGFDFANGINISPDGKY----VYIAEL--------------LAHKIHVYEK 235 (340)
T ss_dssp EEEEECSSCEEEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEEEEE
T ss_pred eEEEEcCCceEEE--cCCCCccceeEECCCCCE----EEEEeC--------------CCCeEEEEEe
Confidence 3444445666555 333346778999999996 655542 2336888877
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=81.48 E-value=10 Score=37.69 Aligned_cols=17 Identities=6% Similarity=-0.423 Sum_probs=12.5
Q ss_pred CCCccccCCCEEEEEeee
Q 004141 392 LSNPWLSDGCTMLLSSIW 409 (771)
Q Consensus 392 ~~~~~s~Dg~~l~~~~~~ 409 (771)
..+.|.|||+ ||++...
T Consensus 147 g~l~fgpDG~-LYvs~Gd 163 (450)
T d1crua_ 147 GRLVIGPDQK-IYYTIGD 163 (450)
T ss_dssp EEEEECTTSC-EEEEECC
T ss_pred cceeEcCCCC-EEEEecC
Confidence 4678999996 7777653
|